Query 012280
Match_columns 467
No_of_seqs 406 out of 3559
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 00:58:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2017 Molybdopterin synthase 100.0 3E-110 7E-115 800.5 27.7 393 61-467 34-427 (427)
2 PRK07411 hypothetical protein; 100.0 2.1E-81 4.6E-86 643.8 36.5 378 65-467 10-390 (390)
3 PRK07878 molybdopterin biosynt 100.0 1E-78 2.2E-83 625.2 39.0 376 64-467 13-392 (392)
4 PRK05597 molybdopterin biosynt 100.0 2.4E-74 5.1E-79 585.1 34.6 352 67-458 2-354 (355)
5 PRK05600 thiamine biosynthesis 100.0 1.3E-73 2.8E-78 580.9 32.9 351 64-454 12-369 (370)
6 PRK07688 thiamine/molybdopteri 100.0 8.7E-62 1.9E-66 489.2 29.3 306 71-385 2-317 (339)
7 PRK12475 thiamine/molybdopteri 100.0 2.6E-57 5.5E-62 456.6 27.5 283 71-361 2-289 (338)
8 PRK05690 molybdopterin biosynt 100.0 2.4E-56 5.3E-61 431.4 25.8 241 65-308 4-245 (245)
9 TIGR02355 moeB molybdopterin s 100.0 8.2E-56 1.8E-60 426.0 25.1 238 71-311 2-240 (240)
10 PRK08223 hypothetical protein; 100.0 2.1E-55 4.5E-60 427.4 24.4 229 71-302 7-265 (287)
11 PRK08762 molybdopterin biosynt 100.0 6.2E-55 1.4E-59 447.5 27.5 267 63-334 105-375 (376)
12 PRK08328 hypothetical protein; 100.0 7.2E-52 1.6E-56 397.1 23.5 229 66-301 2-231 (231)
13 cd00757 ThiF_MoeB_HesA_family 100.0 4.5E-50 9.7E-55 384.7 23.9 228 73-301 1-228 (228)
14 COG0476 ThiF Dinucleotide-util 100.0 6.4E-50 1.4E-54 389.9 23.5 248 65-312 2-253 (254)
15 TIGR03603 cyclo_dehy_ocin bact 100.0 1.3E-48 2.8E-53 389.7 22.3 238 64-318 45-301 (318)
16 TIGR02356 adenyl_thiF thiazole 100.0 2.3E-48 4.9E-53 365.8 19.7 201 73-275 1-202 (202)
17 cd01492 Aos1_SUMO Ubiquitin ac 100.0 1.1E-43 2.5E-48 332.2 19.9 193 71-295 1-193 (197)
18 cd01485 E1-1_like Ubiquitin ac 100.0 1.2E-42 2.6E-47 325.7 21.0 189 73-294 1-193 (198)
19 cd01488 Uba3_RUB Ubiquitin act 100.0 7E-41 1.5E-45 327.9 23.8 215 95-312 1-291 (291)
20 cd01491 Ube1_repeat1 Ubiquitin 100.0 4.1E-40 8.8E-45 322.2 19.5 210 73-292 1-279 (286)
21 TIGR01381 E1_like_apg7 E1-like 100.0 4.5E-39 9.7E-44 338.2 21.0 235 73-314 321-612 (664)
22 PRK08644 thiamine biosynthesis 100.0 6.9E-39 1.5E-43 303.1 19.1 193 81-280 16-211 (212)
23 PRK14852 hypothetical protein; 100.0 1.5E-38 3.2E-43 348.0 20.8 228 72-302 313-569 (989)
24 PRK14851 hypothetical protein; 100.0 3.3E-38 7.1E-43 341.2 21.1 234 66-302 18-280 (679)
25 PRK07877 hypothetical protein; 100.0 2.4E-36 5.3E-41 327.3 21.2 215 65-286 79-331 (722)
26 PRK15116 sulfur acceptor prote 100.0 1.9E-35 4E-40 286.8 20.9 212 65-278 4-263 (268)
27 cd01489 Uba2_SUMO Ubiquitin ac 100.0 8.8E-36 1.9E-40 295.0 18.5 146 95-240 1-147 (312)
28 cd01484 E1-2_like Ubiquitin ac 100.0 3.3E-35 7.1E-40 280.7 18.0 155 95-251 1-157 (234)
29 KOG2015 NEDD8-activating compl 100.0 8.7E-35 1.9E-39 277.6 18.9 229 84-315 31-338 (422)
30 cd01487 E1_ThiF_like E1_ThiF_l 100.0 7.7E-35 1.7E-39 267.4 17.8 171 95-272 1-174 (174)
31 KOG2336 Molybdopterin biosynth 100.0 3.1E-35 6.6E-40 275.7 15.3 243 61-309 47-313 (422)
32 TIGR02354 thiF_fam2 thiamine b 100.0 1.2E-34 2.6E-39 271.7 18.0 186 81-275 9-200 (200)
33 cd00755 YgdL_like Family of ac 100.0 1.4E-33 3.1E-38 269.2 19.4 190 83-272 1-231 (231)
34 COG1179 Dinucleotide-utilizing 100.0 1E-33 2.2E-38 263.0 16.9 211 67-279 6-259 (263)
35 TIGR01408 Ube1 ubiquitin-activ 100.0 5.3E-34 1.1E-38 319.4 16.9 177 71-251 399-584 (1008)
36 TIGR01408 Ube1 ubiquitin-activ 100.0 2.5E-33 5.4E-38 314.0 19.8 150 70-225 3-154 (1008)
37 cd01486 Apg7 Apg7 is an E1-lik 100.0 1.2E-32 2.6E-37 267.9 21.4 216 95-314 1-278 (307)
38 KOG2013 SMT3/SUMO-activating c 100.0 4.4E-33 9.6E-38 277.8 13.7 152 86-237 5-157 (603)
39 cd01493 APPBP1_RUB Ubiquitin a 100.0 7.6E-32 1.6E-36 277.8 19.2 204 72-278 1-221 (425)
40 cd01490 Ube1_repeat2 Ubiquitin 100.0 8.6E-32 1.9E-36 276.1 16.6 156 95-252 1-165 (435)
41 PF00899 ThiF: ThiF family; I 100.0 4.7E-31 1E-35 232.7 14.6 134 92-225 1-134 (135)
42 KOG2014 SMT3/SUMO-activating c 100.0 8.3E-31 1.8E-35 249.2 15.7 159 64-225 4-162 (331)
43 cd01483 E1_enzyme_family Super 100.0 2.2E-29 4.8E-34 224.2 15.0 133 95-227 1-133 (143)
44 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 8.1E-29 1.7E-33 237.1 14.9 206 91-301 9-243 (244)
45 PTZ00245 ubiquitin activating 100.0 4.6E-29 9.9E-34 234.2 11.3 118 66-192 1-118 (287)
46 PRK06153 hypothetical protein; 99.9 2.1E-26 4.5E-31 230.9 18.8 149 86-242 169-320 (393)
47 KOG2018 Predicted dinucleotide 99.9 5.4E-26 1.2E-30 216.7 13.4 222 72-295 55-326 (430)
48 KOG2012 Ubiquitin activating e 99.9 6.4E-26 1.4E-30 238.7 9.1 183 65-251 400-595 (1013)
49 KOG2012 Ubiquitin activating e 99.9 4.7E-25 1E-29 232.2 14.1 148 71-224 17-164 (1013)
50 TIGR03693 ocin_ThiF_like putat 99.9 2.7E-24 5.9E-29 224.6 17.9 230 64-313 96-336 (637)
51 KOG2016 NEDD8-activating compl 99.9 5.1E-23 1.1E-27 204.4 10.8 206 69-276 5-226 (523)
52 cd01526 RHOD_ThiF Member of th 99.9 6.2E-22 1.4E-26 171.5 10.3 120 343-467 2-122 (122)
53 cd01533 4RHOD_Repeat_2 Member 99.8 3.1E-20 6.8E-25 157.4 9.4 101 347-460 8-109 (109)
54 KOG2337 Ubiquitin activating E 99.8 6.4E-20 1.4E-24 185.2 11.9 223 88-314 335-620 (669)
55 cd01518 RHOD_YceA Member of th 99.8 9E-20 1.9E-24 152.4 8.6 99 350-458 3-101 (101)
56 cd01523 RHOD_Lact_B Member of 99.8 2.8E-19 6E-24 149.1 7.7 98 351-457 1-99 (100)
57 cd01534 4RHOD_Repeat_3 Member 99.8 4.4E-19 9.5E-24 146.6 8.4 93 351-457 1-94 (95)
58 PF05237 MoeZ_MoeB: MoeZ/MoeB 99.8 2.1E-19 4.6E-24 145.0 5.5 83 229-314 1-83 (84)
59 cd01528 RHOD_2 Member of the R 99.8 1.8E-18 3.8E-23 144.6 8.3 99 351-461 2-101 (101)
60 cd01444 GlpE_ST GlpE sulfurtra 99.8 2.5E-18 5.4E-23 141.9 8.1 93 350-457 1-95 (96)
61 KOG1530 Rhodanese-related sulf 99.7 3.9E-18 8.5E-23 144.0 8.6 110 346-462 20-133 (136)
62 PRK00162 glpE thiosulfate sulf 99.7 4.9E-18 1.1E-22 143.7 8.8 99 348-462 4-102 (108)
63 cd01527 RHOD_YgaP Member of th 99.7 5.4E-18 1.2E-22 141.0 8.4 96 349-461 2-97 (99)
64 cd01519 RHOD_HSP67B2 Member of 99.7 9.4E-18 2E-22 141.1 8.9 100 352-457 2-105 (106)
65 cd01525 RHOD_Kc Member of the 99.7 1.6E-17 3.5E-22 139.5 8.9 98 351-457 1-104 (105)
66 cd01447 Polysulfide_ST Polysul 99.7 1.7E-17 3.7E-22 138.6 7.6 101 351-459 1-102 (103)
67 cd01524 RHOD_Pyr_redox Member 99.7 2E-17 4.3E-22 135.3 7.7 89 351-457 1-89 (90)
68 PLN02160 thiosulfate sulfurtra 99.7 3.7E-17 8.1E-22 144.2 9.7 106 348-462 14-125 (136)
69 cd01522 RHOD_1 Member of the R 99.7 3.5E-17 7.7E-22 140.6 7.9 102 351-459 1-105 (117)
70 PRK05320 rhodanese superfamily 99.7 6.2E-17 1.3E-21 157.3 10.4 107 347-462 108-219 (257)
71 cd01521 RHOD_PspE2 Member of t 99.7 6.5E-17 1.4E-21 137.4 8.9 99 349-462 8-109 (110)
72 cd01520 RHOD_YbbB Member of th 99.7 9.8E-17 2.1E-21 140.1 9.8 102 351-458 1-126 (128)
73 cd01529 4RHOD_Repeats Member o 99.7 7.1E-17 1.5E-21 133.6 8.5 87 363-458 10-96 (96)
74 cd01530 Cdc25 Cdc25 phosphatas 99.7 6.7E-17 1.4E-21 139.7 8.1 100 349-457 2-120 (121)
75 cd01448 TST_Repeat_1 Thiosulfa 99.7 2E-16 4.4E-21 136.6 10.3 102 351-459 2-121 (122)
76 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 4.6E-16 9.9E-21 141.3 11.7 111 346-462 33-161 (162)
77 cd01449 TST_Repeat_2 Thiosulfa 99.7 2E-16 4.4E-21 135.6 8.8 100 351-457 1-117 (118)
78 PF00581 Rhodanese: Rhodanese- 99.7 2E-16 4.3E-21 133.8 8.0 102 352-458 1-112 (113)
79 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 3.1E-16 6.7E-21 133.9 9.0 100 349-458 2-113 (113)
80 smart00450 RHOD Rhodanese Homo 99.6 5.3E-16 1.1E-20 127.5 9.1 92 364-461 3-99 (100)
81 cd01531 Acr2p Eukaryotic arsen 99.6 6E-16 1.3E-20 132.0 9.5 101 349-459 2-112 (113)
82 PRK01415 hypothetical protein; 99.6 4.8E-16 1E-20 149.1 9.4 104 348-461 111-214 (247)
83 TIGR02981 phageshock_pspE phag 99.6 4.3E-16 9.3E-21 130.1 7.7 80 365-458 18-97 (101)
84 cd01532 4RHOD_Repeat_1 Member 99.6 6.5E-16 1.4E-20 126.9 7.6 82 364-458 9-92 (92)
85 COG0607 PspE Rhodanese-related 99.6 7.9E-16 1.7E-20 129.9 8.1 98 356-466 11-109 (110)
86 cd01535 4RHOD_Repeat_4 Member 99.6 1.2E-15 2.6E-20 136.0 7.8 92 356-462 2-93 (145)
87 PRK00142 putative rhodanese-re 99.6 2E-15 4.3E-20 150.9 9.6 106 347-462 110-215 (314)
88 PRK10287 thiosulfate:cyanide s 99.6 1.3E-15 2.8E-20 127.9 6.8 79 366-458 21-99 (104)
89 cd00158 RHOD Rhodanese Homolog 99.6 4.1E-15 8.8E-20 120.1 7.0 87 357-457 3-89 (89)
90 PRK08762 molybdopterin biosynt 99.6 7.4E-15 1.6E-19 151.1 9.2 99 349-462 3-101 (376)
91 cd01445 TST_Repeats Thiosulfat 99.5 2.8E-14 6E-19 126.2 10.5 102 351-458 1-138 (138)
92 PLN02723 3-mercaptopyruvate su 99.5 1.9E-13 4.1E-18 137.6 10.5 109 348-465 189-314 (320)
93 cd01446 DSP_MapKP N-terminal r 99.4 3.3E-13 7.1E-18 118.4 9.0 108 351-459 2-127 (132)
94 PRK11493 sseA 3-mercaptopyruva 99.4 3.9E-13 8.5E-18 133.1 10.5 105 350-461 6-131 (281)
95 PLN02723 3-mercaptopyruvate su 99.4 4.2E-13 9E-18 135.2 10.4 109 347-462 20-148 (320)
96 PRK09629 bifunctional thiosulf 99.4 4.7E-13 1E-17 144.9 10.5 106 350-462 10-126 (610)
97 TIGR03167 tRNA_sel_U_synt tRNA 99.4 1.7E-13 3.6E-18 136.7 6.5 94 366-464 3-120 (311)
98 PRK11493 sseA 3-mercaptopyruva 99.4 4.9E-13 1.1E-17 132.3 9.7 103 349-458 153-271 (281)
99 PRK11784 tRNA 2-selenouridine 99.4 3.9E-13 8.5E-18 135.9 8.1 106 351-462 3-132 (345)
100 PRK09629 bifunctional thiosulf 99.4 1.5E-12 3.3E-17 140.9 11.3 105 348-459 146-264 (610)
101 COG2897 SseA Rhodanese-related 99.3 3.3E-12 7.1E-17 125.0 9.6 109 347-461 154-277 (285)
102 COG1054 Predicted sulfurtransf 99.1 1.3E-10 2.8E-15 112.1 7.4 104 348-461 112-215 (308)
103 COG2897 SseA Rhodanese-related 99.0 8.6E-10 1.9E-14 108.1 10.3 110 347-462 9-135 (285)
104 PRK01269 tRNA s(4)U8 sulfurtra 99.0 2.3E-10 5.1E-15 121.3 6.6 73 364-451 406-482 (482)
105 KOG3772 M-phase inducer phosph 98.8 1.3E-08 2.7E-13 100.0 6.9 105 347-459 154-276 (325)
106 COG4015 Predicted dinucleotide 98.7 2.9E-07 6.2E-12 81.2 13.0 180 93-277 18-212 (217)
107 KOG1529 Mercaptopyruvate sulfu 98.4 7.6E-07 1.6E-11 85.9 7.2 92 364-463 171-279 (286)
108 KOG1529 Mercaptopyruvate sulfu 98.2 4.5E-06 9.7E-11 80.7 9.0 106 350-462 6-133 (286)
109 TIGR03882 cyclo_dehyd_2 bacter 98.1 8.6E-06 1.9E-10 76.1 8.5 95 84-237 96-193 (193)
110 PRK12549 shikimate 5-dehydroge 98.1 1.3E-05 2.7E-10 79.6 8.7 78 90-192 124-201 (284)
111 COG1748 LYS9 Saccharopine dehy 98.0 4.5E-05 9.7E-10 78.1 10.4 99 94-217 2-101 (389)
112 PF01488 Shikimate_DH: Shikima 97.9 2.3E-05 4.9E-10 69.0 6.9 81 89-196 8-88 (135)
113 PRK06718 precorrin-2 dehydroge 97.9 0.00013 2.7E-09 68.8 10.8 91 90-211 7-97 (202)
114 COG5105 MIH1 Mitotic inducer, 97.8 5.6E-05 1.2E-09 73.6 7.4 101 347-459 240-358 (427)
115 PF13241 NAD_binding_7: Putati 97.6 7.6E-05 1.7E-09 62.4 5.1 88 90-214 4-91 (103)
116 TIGR01470 cysG_Nterm siroheme 97.6 0.00073 1.6E-08 63.8 11.8 95 90-214 6-100 (205)
117 PRK06719 precorrin-2 dehydroge 97.4 0.0013 2.8E-08 59.4 10.5 86 89-207 9-94 (157)
118 PRK14027 quinate/shikimate deh 97.4 0.00049 1.1E-08 68.2 8.1 79 91-192 125-203 (283)
119 PF03435 Saccharop_dh: Sacchar 97.4 0.00046 9.9E-09 71.5 7.6 95 96-214 1-97 (386)
120 PRK12548 shikimate 5-dehydroge 97.3 0.00068 1.5E-08 67.5 8.4 84 91-192 124-208 (289)
121 PRK05562 precorrin-2 dehydroge 97.3 0.0024 5.2E-08 60.9 11.1 97 88-214 20-116 (223)
122 TIGR01809 Shik-DH-AROM shikima 97.1 0.0013 2.9E-08 65.2 7.4 78 91-193 123-200 (282)
123 PRK12749 quinate/shikimate deh 97.0 0.0019 4.2E-08 64.1 7.9 83 91-192 122-205 (288)
124 COG0373 HemA Glutamyl-tRNA red 97.0 0.0013 2.8E-08 68.0 6.2 76 90-195 175-250 (414)
125 PRK00258 aroE shikimate 5-dehy 96.9 0.002 4.3E-08 63.8 6.8 76 90-193 120-195 (278)
126 cd05311 NAD_bind_2_malic_enz N 96.9 0.0026 5.7E-08 60.9 7.1 37 90-126 22-60 (226)
127 PRK13940 glutamyl-tRNA reducta 96.9 0.0019 4.1E-08 67.4 6.3 77 90-195 178-254 (414)
128 COG0169 AroE Shikimate 5-dehyd 96.8 0.0031 6.7E-08 62.3 7.5 144 92-281 125-269 (283)
129 cd01080 NAD_bind_m-THF_DH_Cycl 96.8 0.0024 5.2E-08 58.3 5.8 58 90-195 41-99 (168)
130 PRK11199 tyrA bifunctional cho 96.8 0.0033 7.1E-08 64.9 7.4 62 64-126 64-131 (374)
131 PF01113 DapB_N: Dihydrodipico 96.8 0.0086 1.9E-07 51.8 8.9 95 95-216 2-99 (124)
132 cd01065 NAD_bind_Shikimate_DH 96.7 0.0034 7.5E-08 55.9 6.1 36 91-126 17-52 (155)
133 cd05213 NAD_bind_Glutamyl_tRNA 96.7 0.0054 1.2E-07 61.7 8.0 83 91-203 176-258 (311)
134 PRK14106 murD UDP-N-acetylmura 96.7 0.0076 1.6E-07 63.6 9.3 96 90-213 2-97 (450)
135 TIGR01035 hemA glutamyl-tRNA r 96.6 0.0061 1.3E-07 63.9 8.1 76 90-195 177-252 (417)
136 COG0569 TrkA K+ transport syst 96.3 0.036 7.9E-07 53.1 10.9 97 94-216 1-100 (225)
137 COG1648 CysG Siroheme synthase 96.3 0.027 5.9E-07 53.3 9.7 95 90-214 9-103 (210)
138 cd01078 NAD_bind_H4MPT_DH NADP 96.3 0.015 3.3E-07 54.1 7.8 84 90-195 25-109 (194)
139 cd05291 HicDH_like L-2-hydroxy 96.3 0.012 2.6E-07 59.1 7.4 74 94-194 1-79 (306)
140 PRK10637 cysG siroheme synthas 96.2 0.035 7.6E-07 58.9 11.2 95 89-213 8-102 (457)
141 cd01075 NAD_bind_Leu_Phe_Val_D 96.2 0.025 5.4E-07 53.2 8.9 36 90-126 25-60 (200)
142 PLN02819 lysine-ketoglutarate 96.1 0.038 8.1E-07 63.7 11.3 99 91-215 567-679 (1042)
143 PF03446 NAD_binding_2: NAD bi 96.1 0.018 3.9E-07 52.2 7.2 123 94-227 2-136 (163)
144 COG2603 Predicted ATPase [Gene 96.1 0.0067 1.5E-07 59.0 4.5 99 352-457 4-127 (334)
145 PF01210 NAD_Gly3P_dh_N: NAD-d 96.1 0.015 3.2E-07 52.4 6.5 100 95-214 1-102 (157)
146 COG1086 Predicted nucleoside-d 96.1 0.023 4.9E-07 60.5 8.6 99 72-190 230-332 (588)
147 PF03807 F420_oxidored: NADP o 96.0 0.01 2.2E-07 48.4 4.5 90 95-215 1-94 (96)
148 PRK00045 hemA glutamyl-tRNA re 95.9 0.011 2.5E-07 62.0 5.6 75 91-195 180-254 (423)
149 PF00056 Ldh_1_N: lactate/mala 95.9 0.014 3E-07 51.7 5.3 76 94-194 1-80 (141)
150 PTZ00082 L-lactate dehydrogena 95.9 0.036 7.7E-07 56.1 8.9 36 91-126 4-39 (321)
151 PLN00203 glutamyl-tRNA reducta 95.9 0.023 5E-07 61.0 7.9 78 91-195 264-341 (519)
152 PRK14192 bifunctional 5,10-met 95.8 0.025 5.4E-07 56.1 7.1 34 90-124 156-190 (283)
153 PF03949 Malic_M: Malic enzyme 95.8 0.041 8.9E-07 53.4 8.4 104 89-214 21-139 (255)
154 PRK01438 murD UDP-N-acetylmura 95.8 0.033 7.2E-07 59.4 8.5 94 91-213 14-107 (480)
155 PRK05476 S-adenosyl-L-homocyst 95.7 0.045 9.7E-07 57.3 9.0 37 90-127 209-245 (425)
156 PRK00048 dihydrodipicolinate r 95.7 0.095 2.1E-06 51.2 10.7 87 94-214 2-90 (257)
157 cd05211 NAD_bind_Glu_Leu_Phe_V 95.6 0.066 1.4E-06 51.0 9.0 39 89-127 19-57 (217)
158 cd00401 AdoHcyase S-adenosyl-L 95.6 0.056 1.2E-06 56.4 9.1 36 90-126 199-234 (413)
159 PRK07819 3-hydroxybutyryl-CoA 95.6 0.028 6E-07 55.9 6.6 33 94-127 6-38 (286)
160 PRK07574 formate dehydrogenase 95.6 0.099 2.2E-06 54.1 10.7 93 89-215 188-284 (385)
161 PRK14619 NAD(P)H-dependent gly 95.5 0.051 1.1E-06 54.5 8.1 32 94-126 5-36 (308)
162 PRK13403 ketol-acid reductoiso 95.4 0.093 2E-06 52.7 9.6 80 88-202 11-90 (335)
163 PRK00066 ldh L-lactate dehydro 95.4 0.047 1E-06 55.1 7.7 77 92-193 5-83 (315)
164 PRK15469 ghrA bifunctional gly 95.4 0.052 1.1E-06 54.7 7.8 91 89-215 132-226 (312)
165 cd00300 LDH_like L-lactate deh 95.3 0.074 1.6E-06 53.2 8.8 74 96-195 1-78 (300)
166 PTZ00117 malate dehydrogenase; 95.3 0.036 7.9E-07 55.9 6.5 36 91-126 3-38 (319)
167 PRK08618 ornithine cyclodeamin 95.3 0.06 1.3E-06 54.5 8.1 94 92-214 126-220 (325)
168 PRK06197 short chain dehydroge 95.3 0.075 1.6E-06 52.9 8.6 43 83-126 6-49 (306)
169 PRK00676 hemA glutamyl-tRNA re 95.3 0.033 7.2E-07 56.4 6.0 37 90-126 171-207 (338)
170 PRK06141 ornithine cyclodeamin 95.3 0.061 1.3E-06 54.2 7.9 78 90-194 122-200 (314)
171 cd05312 NAD_bind_1_malic_enz N 95.3 0.1 2.2E-06 51.4 9.2 104 89-214 21-138 (279)
172 PRK09599 6-phosphogluconate de 95.3 0.055 1.2E-06 54.1 7.6 116 95-219 2-123 (301)
173 TIGR02853 spore_dpaA dipicolin 95.3 0.044 9.5E-07 54.5 6.7 35 90-125 148-182 (287)
174 PRK12550 shikimate 5-dehydroge 95.2 0.037 7.9E-07 54.6 6.1 34 93-126 122-155 (272)
175 PLN02494 adenosylhomocysteinas 95.2 0.018 3.9E-07 60.6 4.0 63 64-127 223-287 (477)
176 cd05191 NAD_bind_amino_acid_DH 95.2 0.028 6.1E-07 45.1 4.3 38 89-126 19-56 (86)
177 cd00762 NAD_bind_malic_enz NAD 95.1 0.11 2.4E-06 50.3 8.8 105 89-214 21-139 (254)
178 TIGR00507 aroE shikimate 5-deh 95.1 0.11 2.3E-06 51.2 8.9 34 91-125 115-148 (270)
179 TIGR00518 alaDH alanine dehydr 95.1 0.23 5E-06 51.2 11.6 35 91-126 165-199 (370)
180 cd05290 LDH_3 A subgroup of L- 95.0 0.1 2.2E-06 52.5 8.7 73 95-194 1-79 (307)
181 PRK00094 gpsA NAD(P)H-dependen 95.0 0.078 1.7E-06 53.2 7.9 100 95-214 3-104 (325)
182 TIGR02992 ectoine_eutC ectoine 95.0 0.092 2E-06 53.2 8.3 75 93-193 129-204 (326)
183 TIGR00872 gnd_rel 6-phosphoglu 94.9 0.069 1.5E-06 53.3 7.2 115 95-218 2-121 (298)
184 PRK04148 hypothetical protein; 94.9 0.15 3.2E-06 44.7 8.2 93 92-214 16-108 (134)
185 PF02719 Polysacc_synt_2: Poly 94.9 0.045 9.7E-07 54.3 5.6 77 96-191 1-85 (293)
186 PRK05479 ketol-acid reductoiso 94.9 0.14 3E-06 51.9 9.2 78 89-200 13-90 (330)
187 PRK07340 ornithine cyclodeamin 94.9 0.082 1.8E-06 53.0 7.5 77 90-194 122-199 (304)
188 PRK02705 murD UDP-N-acetylmura 94.8 0.2 4.4E-06 53.0 10.8 98 94-214 1-98 (459)
189 COG1063 Tdh Threonine dehydrog 94.8 0.13 2.9E-06 52.5 9.0 94 93-210 169-265 (350)
190 PRK08293 3-hydroxybutyryl-CoA 94.8 0.1 2.2E-06 51.7 7.9 32 94-126 4-35 (287)
191 PRK06035 3-hydroxyacyl-CoA deh 94.8 0.095 2E-06 52.1 7.6 33 94-127 4-36 (291)
192 PF13460 NAD_binding_10: NADH( 94.7 0.45 9.7E-06 43.2 11.5 88 96-212 1-93 (183)
193 TIGR00936 ahcY adenosylhomocys 94.7 0.14 3E-06 53.3 9.0 36 91-127 193-228 (406)
194 PRK09496 trkA potassium transp 94.7 0.36 7.8E-06 50.8 12.3 94 91-210 229-324 (453)
195 PF02737 3HCDH_N: 3-hydroxyacy 94.7 0.015 3.2E-07 53.7 1.6 91 95-199 1-95 (180)
196 PRK06522 2-dehydropantoate 2-r 94.7 0.31 6.7E-06 48.3 11.2 95 95-213 2-98 (304)
197 PF02254 TrkA_N: TrkA-N domain 94.7 0.66 1.4E-05 38.9 11.6 91 96-214 1-94 (116)
198 PF04273 DUF442: Putative phos 94.6 0.18 4E-06 42.6 8.0 77 349-438 13-106 (110)
199 PRK12490 6-phosphogluconate de 94.6 0.1 2.2E-06 52.1 7.6 116 95-219 2-123 (299)
200 PTZ00345 glycerol-3-phosphate 94.6 0.13 2.8E-06 52.9 8.4 101 93-214 11-128 (365)
201 PRK07066 3-hydroxybutyryl-CoA 94.6 0.11 2.4E-06 52.4 7.7 33 94-127 8-40 (321)
202 PRK06223 malate dehydrogenase; 94.5 0.068 1.5E-06 53.5 6.0 33 94-126 3-35 (307)
203 KOG4169 15-hydroxyprostaglandi 94.5 0.1 2.2E-06 49.5 6.6 80 91-191 3-91 (261)
204 PRK14982 acyl-ACP reductase; P 94.4 0.044 9.6E-07 55.6 4.4 37 90-126 152-190 (340)
205 PRK06436 glycerate dehydrogena 94.4 0.072 1.6E-06 53.4 5.9 37 88-125 117-153 (303)
206 PRK11880 pyrroline-5-carboxyla 94.4 0.19 4.1E-06 49.1 8.8 89 94-214 3-93 (267)
207 PF01118 Semialdhyde_dh: Semia 94.4 0.15 3.2E-06 43.7 7.0 91 95-215 1-97 (121)
208 PRK09242 tropinone reductase; 94.4 0.22 4.9E-06 47.9 9.1 64 90-173 6-70 (257)
209 PRK07062 short chain dehydroge 94.4 0.23 4.9E-06 48.1 9.1 63 90-172 5-68 (265)
210 PLN02602 lactate dehydrogenase 94.3 0.11 2.3E-06 53.2 6.8 75 94-194 38-116 (350)
211 PRK06130 3-hydroxybutyryl-CoA 94.3 0.19 4.2E-06 50.3 8.6 32 94-126 5-36 (311)
212 cd05293 LDH_1 A subgroup of L- 94.2 0.1 2.3E-06 52.5 6.5 75 93-193 3-81 (312)
213 PF00070 Pyr_redox: Pyridine n 94.2 0.077 1.7E-06 41.8 4.5 31 95-126 1-31 (80)
214 TIGR03376 glycerol3P_DH glycer 94.2 0.22 4.8E-06 50.7 9.0 102 95-214 1-115 (342)
215 PF02558 ApbA: Ketopantoate re 94.2 0.037 8E-07 49.0 2.9 88 96-204 1-88 (151)
216 PTZ00142 6-phosphogluconate de 94.2 0.11 2.4E-06 55.2 6.9 121 94-219 2-130 (470)
217 PRK13304 L-aspartate dehydroge 94.1 0.42 9E-06 46.9 10.4 89 94-215 2-92 (265)
218 PTZ00325 malate dehydrogenase; 94.1 0.14 3.1E-06 51.7 7.1 35 91-125 6-42 (321)
219 PRK05875 short chain dehydroge 94.0 0.18 3.9E-06 49.1 7.7 36 90-126 4-40 (276)
220 PRK05808 3-hydroxybutyryl-CoA 94.0 0.052 1.1E-06 53.6 3.8 32 94-126 4-35 (282)
221 PRK12480 D-lactate dehydrogena 94.0 0.32 6.9E-06 49.4 9.6 89 89-215 142-234 (330)
222 PRK05854 short chain dehydroge 94.0 0.27 5.9E-06 49.2 9.0 63 91-173 12-75 (313)
223 PRK14175 bifunctional 5,10-met 93.9 0.13 2.9E-06 50.8 6.5 77 90-217 155-232 (286)
224 PRK00141 murD UDP-N-acetylmura 93.9 0.31 6.8E-06 52.0 9.8 39 86-125 8-46 (473)
225 PRK07634 pyrroline-5-carboxyla 93.9 0.54 1.2E-05 45.1 10.7 92 92-214 3-98 (245)
226 TIGR01202 bchC 2-desacetyl-2-h 93.9 0.18 3.8E-06 50.4 7.5 35 91-125 143-177 (308)
227 PRK14618 NAD(P)H-dependent gly 93.9 0.18 3.9E-06 50.9 7.6 32 94-126 5-36 (328)
228 PRK01710 murD UDP-N-acetylmura 93.9 0.26 5.7E-06 52.2 9.2 97 89-213 10-106 (458)
229 PRK04308 murD UDP-N-acetylmura 93.9 0.32 6.9E-06 51.3 9.8 94 91-213 3-96 (445)
230 PLN02427 UDP-apiose/xylose syn 93.9 0.3 6.5E-06 50.3 9.4 113 89-221 10-141 (386)
231 PRK08229 2-dehydropantoate 2-r 93.9 0.18 3.8E-06 51.1 7.5 32 94-126 3-34 (341)
232 PF02826 2-Hacid_dh_C: D-isome 93.9 0.043 9.4E-07 50.4 2.8 93 87-214 30-126 (178)
233 PRK11908 NAD-dependent epimera 93.8 0.55 1.2E-05 47.5 11.1 102 94-221 2-123 (347)
234 COG1893 ApbA Ketopantoate redu 93.8 0.44 9.5E-06 47.9 10.1 89 94-209 1-93 (307)
235 TIGR01244 conserved hypothetic 93.8 0.26 5.6E-06 43.2 7.4 80 349-439 13-107 (135)
236 TIGR01915 npdG NADPH-dependent 93.8 0.2 4.4E-06 47.5 7.3 87 95-204 2-89 (219)
237 PRK08291 ectoine utilization p 93.8 0.24 5.3E-06 50.2 8.3 75 93-193 132-207 (330)
238 PRK12769 putative oxidoreducta 93.7 0.25 5.5E-06 54.8 9.1 125 64-196 296-425 (654)
239 PLN02350 phosphogluconate dehy 93.7 0.18 3.8E-06 53.9 7.4 121 94-219 7-136 (493)
240 TIGR00873 gnd 6-phosphoglucona 93.7 0.2 4.2E-06 53.3 7.7 121 95-219 1-127 (467)
241 TIGR00036 dapB dihydrodipicoli 93.7 0.55 1.2E-05 46.1 10.4 95 95-216 3-100 (266)
242 COG1064 AdhP Zn-dependent alco 93.7 0.28 6.1E-06 49.7 8.3 72 93-192 167-238 (339)
243 KOG0069 Glyoxylate/hydroxypyru 93.6 0.19 4.1E-06 50.7 7.0 92 88-214 157-252 (336)
244 PRK07063 short chain dehydroge 93.6 0.38 8.2E-06 46.4 9.0 35 90-125 4-39 (260)
245 PRK07530 3-hydroxybutyryl-CoA 93.6 0.071 1.5E-06 53.0 4.0 33 93-126 4-36 (292)
246 PRK09880 L-idonate 5-dehydroge 93.6 0.5 1.1E-05 47.8 10.3 36 91-126 168-203 (343)
247 cd01076 NAD_bind_1_Glu_DH NAD( 93.6 0.38 8.3E-06 46.1 8.8 38 89-126 27-64 (227)
248 PRK07502 cyclohexadienyl dehyd 93.5 0.67 1.5E-05 46.3 11.0 33 94-126 7-40 (307)
249 PRK12826 3-ketoacyl-(acyl-carr 93.5 0.27 5.8E-06 46.8 7.8 36 90-126 3-39 (251)
250 TIGR01763 MalateDH_bact malate 93.5 0.14 3.1E-06 51.3 6.0 32 94-125 2-33 (305)
251 PRK09260 3-hydroxybutyryl-CoA 93.5 0.06 1.3E-06 53.4 3.3 33 94-127 2-34 (288)
252 PRK07831 short chain dehydroge 93.5 0.39 8.4E-06 46.4 9.0 35 90-125 14-50 (262)
253 PRK08374 homoserine dehydrogen 93.5 0.43 9.3E-06 48.6 9.5 108 94-215 3-122 (336)
254 PLN03209 translocon at the inn 93.4 0.67 1.4E-05 50.3 11.2 82 91-192 78-168 (576)
255 COG0240 GpsA Glycerol-3-phosph 93.4 0.22 4.7E-06 50.1 6.9 98 94-214 2-104 (329)
256 PRK03562 glutathione-regulated 93.3 0.27 5.8E-06 54.3 8.3 88 93-208 400-489 (621)
257 PRK02006 murD UDP-N-acetylmura 93.3 0.39 8.4E-06 51.5 9.3 35 91-126 5-39 (498)
258 KOG1093 Predicted protein kina 93.3 0.021 4.5E-07 60.3 -0.4 107 342-459 613-721 (725)
259 PRK13301 putative L-aspartate 93.3 0.24 5.2E-06 48.4 6.8 108 94-211 3-117 (267)
260 TIGR03026 NDP-sugDHase nucleot 93.2 0.47 1E-05 49.6 9.6 41 95-136 2-42 (411)
261 TIGR00715 precor6x_red precorr 93.2 0.59 1.3E-05 45.6 9.6 94 94-214 1-98 (256)
262 PRK09496 trkA potassium transp 93.2 0.67 1.5E-05 48.8 10.9 91 95-212 2-95 (453)
263 PRK07680 late competence prote 93.2 0.59 1.3E-05 45.9 9.8 89 95-214 2-95 (273)
264 PRK09310 aroDE bifunctional 3- 93.2 0.18 3.9E-06 53.9 6.5 35 90-125 329-363 (477)
265 PLN02240 UDP-glucose 4-epimera 93.2 0.8 1.7E-05 46.2 11.1 33 91-124 3-36 (352)
266 PTZ00075 Adenosylhomocysteinas 93.2 0.13 2.7E-06 54.4 5.2 36 90-126 251-286 (476)
267 cd01339 LDH-like_MDH L-lactate 93.2 0.13 2.8E-06 51.4 5.1 31 96-126 1-31 (300)
268 PRK08217 fabG 3-ketoacyl-(acyl 93.2 0.4 8.6E-06 45.6 8.3 35 91-126 3-38 (253)
269 PRK08306 dipicolinate synthase 93.2 0.15 3.3E-06 50.9 5.5 36 90-126 149-184 (296)
270 PRK12771 putative glutamate sy 93.1 0.32 6.9E-06 53.1 8.4 36 91-127 135-170 (564)
271 PRK13302 putative L-aspartate 93.0 0.47 1E-05 46.7 8.7 90 92-213 5-96 (271)
272 COG1250 FadB 3-hydroxyacyl-CoA 93.0 0.11 2.4E-06 51.9 4.3 88 93-199 3-99 (307)
273 PRK12439 NAD(P)H-dependent gly 93.0 0.52 1.1E-05 48.0 9.3 101 94-214 8-110 (341)
274 COG0281 SfcA Malic enzyme [Ene 93.0 0.4 8.8E-06 49.4 8.3 123 63-215 153-299 (432)
275 PRK06928 pyrroline-5-carboxyla 93.0 0.74 1.6E-05 45.4 10.1 90 95-214 3-97 (277)
276 PRK02472 murD UDP-N-acetylmura 93.0 0.35 7.5E-06 51.0 8.3 35 91-126 3-37 (447)
277 PRK06249 2-dehydropantoate 2-r 93.0 0.24 5.1E-06 49.8 6.7 34 93-127 5-38 (313)
278 PF10727 Rossmann-like: Rossma 93.0 0.33 7.2E-06 42.2 6.6 81 92-204 9-89 (127)
279 PRK07523 gluconate 5-dehydroge 92.9 0.49 1.1E-05 45.4 8.6 35 90-125 7-42 (255)
280 PRK06476 pyrroline-5-carboxyla 92.9 0.53 1.2E-05 45.8 8.8 89 95-214 2-92 (258)
281 PRK06270 homoserine dehydrogen 92.9 0.47 1E-05 48.4 8.7 106 94-214 3-124 (341)
282 TIGR01505 tartro_sem_red 2-hyd 92.9 0.54 1.2E-05 46.6 9.0 31 95-126 1-31 (291)
283 PLN03139 formate dehydrogenase 92.8 0.3 6.4E-06 50.6 7.2 93 89-215 195-291 (386)
284 TIGR01757 Malate-DH_plant mala 92.8 0.31 6.7E-06 50.4 7.3 78 94-194 45-131 (387)
285 KOG0024 Sorbitol dehydrogenase 92.8 0.8 1.7E-05 45.8 9.7 35 92-126 169-203 (354)
286 COG1062 AdhC Zn-dependent alco 92.7 0.54 1.2E-05 47.3 8.5 97 92-212 185-283 (366)
287 PRK15181 Vi polysaccharide bio 92.7 0.66 1.4E-05 47.1 9.6 37 89-126 11-48 (348)
288 PF05368 NmrA: NmrA-like famil 92.7 1.6 3.6E-05 41.3 11.8 93 96-214 1-100 (233)
289 PRK00142 putative rhodanese-re 92.7 0.022 4.7E-07 57.4 -1.3 49 352-402 17-65 (314)
290 PRK07231 fabG 3-ketoacyl-(acyl 92.6 0.52 1.1E-05 44.9 8.3 36 90-126 2-38 (251)
291 TIGR03589 PseB UDP-N-acetylglu 92.6 0.51 1.1E-05 47.5 8.6 79 91-192 2-83 (324)
292 COG2085 Predicted dinucleotide 92.6 0.69 1.5E-05 43.5 8.6 90 94-214 2-92 (211)
293 cd08230 glucose_DH Glucose deh 92.6 0.53 1.2E-05 47.8 8.7 33 92-125 172-204 (355)
294 COG0771 MurD UDP-N-acetylmuram 92.5 0.45 9.8E-06 50.1 8.1 93 91-212 5-97 (448)
295 COG0039 Mdh Malate/lactate deh 92.5 0.18 4E-06 50.4 4.9 33 94-126 1-34 (313)
296 cd02201 FtsZ_type1 FtsZ is a G 92.4 0.87 1.9E-05 45.6 9.8 35 95-129 2-38 (304)
297 PF00106 adh_short: short chai 92.4 0.6 1.3E-05 41.5 7.9 82 94-194 1-91 (167)
298 PF02629 CoA_binding: CoA bind 92.4 0.89 1.9E-05 37.2 8.2 90 92-214 2-92 (96)
299 PRK08125 bifunctional UDP-gluc 92.3 1 2.2E-05 50.2 11.2 106 90-221 312-437 (660)
300 cd00650 LDH_MDH_like NAD-depen 92.3 0.35 7.6E-06 47.3 6.8 73 96-193 1-80 (263)
301 TIGR01850 argC N-acetyl-gamma- 92.3 0.43 9.2E-06 48.8 7.6 97 95-216 2-100 (346)
302 PRK06567 putative bifunctional 92.3 0.51 1.1E-05 54.1 8.7 42 91-133 381-422 (1028)
303 PRK05872 short chain dehydroge 92.3 0.79 1.7E-05 45.4 9.3 36 90-126 6-42 (296)
304 PRK07679 pyrroline-5-carboxyla 92.2 0.92 2E-05 44.7 9.7 91 93-214 3-98 (279)
305 PRK12809 putative oxidoreducta 92.2 0.68 1.5E-05 51.3 9.6 124 64-195 279-407 (639)
306 PRK14194 bifunctional 5,10-met 92.2 0.38 8.1E-06 48.0 6.7 78 89-217 155-233 (301)
307 TIGR00065 ftsZ cell division p 92.2 0.81 1.8E-05 46.8 9.3 114 86-214 10-137 (349)
308 PRK08251 short chain dehydroge 92.2 0.8 1.7E-05 43.6 8.9 62 93-174 2-64 (248)
309 PF03721 UDPG_MGDP_dh_N: UDP-g 92.1 0.12 2.7E-06 47.8 3.1 87 94-195 1-88 (185)
310 PLN02852 ferredoxin-NADP+ redu 92.1 0.59 1.3E-05 50.0 8.6 97 92-195 25-126 (491)
311 PRK07576 short chain dehydroge 92.1 0.49 1.1E-05 45.9 7.5 37 89-126 5-42 (264)
312 PRK15059 tartronate semialdehy 92.1 0.93 2E-05 45.2 9.5 121 95-227 2-135 (292)
313 PRK05867 short chain dehydroge 92.1 0.69 1.5E-05 44.4 8.4 34 91-125 7-41 (253)
314 PRK13529 malate dehydrogenase; 92.1 0.73 1.6E-05 49.6 9.1 111 89-214 291-415 (563)
315 PRK03659 glutathione-regulated 92.0 0.49 1.1E-05 52.1 8.1 88 93-208 400-489 (601)
316 PLN02688 pyrroline-5-carboxyla 92.0 0.8 1.7E-05 44.6 8.9 87 95-214 2-94 (266)
317 PRK07478 short chain dehydroge 92.0 0.75 1.6E-05 44.1 8.6 35 90-125 3-38 (254)
318 PRK06125 short chain dehydroge 92.0 0.75 1.6E-05 44.3 8.6 36 90-126 4-40 (259)
319 PRK14620 NAD(P)H-dependent gly 92.0 0.89 1.9E-05 45.8 9.4 31 95-126 2-32 (326)
320 TIGR01832 kduD 2-deoxy-D-gluco 91.9 0.8 1.7E-05 43.6 8.6 34 91-125 3-37 (248)
321 PRK06129 3-hydroxyacyl-CoA deh 91.9 0.33 7.1E-06 48.7 6.1 33 94-127 3-35 (308)
322 TIGR01318 gltD_gamma_fam gluta 91.9 0.8 1.7E-05 48.7 9.4 63 63-126 109-173 (467)
323 PRK12384 sorbitol-6-phosphate 91.8 1 2.2E-05 43.2 9.3 33 93-126 2-35 (259)
324 PRK06545 prephenate dehydrogen 91.8 0.57 1.2E-05 48.1 7.8 32 94-126 1-32 (359)
325 PRK12862 malic enzyme; Reviewe 91.8 0.46 1E-05 53.4 7.6 59 69-127 151-229 (763)
326 PRK12921 2-dehydropantoate 2-r 91.7 0.22 4.9E-06 49.4 4.7 30 95-125 2-31 (305)
327 PRK06949 short chain dehydroge 91.7 0.76 1.6E-05 44.0 8.3 34 91-125 7-41 (258)
328 PRK12779 putative bifunctional 91.7 0.83 1.8E-05 52.9 9.8 94 92-194 305-403 (944)
329 PRK09330 cell division protein 91.7 1.8 4E-05 44.7 11.3 118 91-223 11-144 (384)
330 PRK08277 D-mannonate oxidoredu 91.6 0.92 2E-05 44.2 8.8 36 90-126 7-43 (278)
331 PRK06138 short chain dehydroge 91.6 1 2.2E-05 43.0 8.9 34 91-125 3-37 (252)
332 PF03447 NAD_binding_3: Homose 91.6 0.75 1.6E-05 38.9 7.2 85 100-216 1-91 (117)
333 TIGR01181 dTDP_gluc_dehyt dTDP 91.5 1.4 3.1E-05 43.3 10.3 31 95-125 1-33 (317)
334 PRK12939 short chain dehydroge 91.5 0.96 2.1E-05 42.9 8.7 33 91-124 5-38 (250)
335 cd08239 THR_DH_like L-threonin 91.5 1.4 3.1E-05 44.2 10.4 34 92-125 163-196 (339)
336 COG1091 RfbD dTDP-4-dehydrorha 91.5 1.3 2.9E-05 43.7 9.6 91 95-217 2-101 (281)
337 PLN02206 UDP-glucuronate decar 91.4 1.1 2.3E-05 47.5 9.6 35 90-125 116-151 (442)
338 PRK09186 flagellin modificatio 91.4 0.9 2E-05 43.4 8.5 33 91-124 2-35 (256)
339 PRK11064 wecC UDP-N-acetyl-D-m 91.4 0.95 2.1E-05 47.4 9.2 40 94-134 4-43 (415)
340 PRK05225 ketol-acid reductoiso 91.4 1.2 2.7E-05 46.7 9.7 33 88-120 31-63 (487)
341 PRK07417 arogenate dehydrogena 91.4 0.51 1.1E-05 46.6 6.7 31 95-126 2-32 (279)
342 PRK06139 short chain dehydroge 91.3 0.72 1.6E-05 46.7 8.0 35 90-125 4-39 (330)
343 PRK15461 NADH-dependent gamma- 91.3 1.2 2.5E-05 44.4 9.3 123 94-227 2-137 (296)
344 PRK03803 murD UDP-N-acetylmura 91.3 0.98 2.1E-05 47.7 9.2 92 93-213 6-97 (448)
345 cd05298 GH4_GlvA_pagL_like Gly 91.3 0.9 2E-05 47.9 8.8 106 95-223 2-114 (437)
346 PRK05866 short chain dehydroge 91.3 0.81 1.8E-05 45.4 8.1 35 90-125 37-72 (293)
347 TIGR00465 ilvC ketol-acid redu 91.3 0.77 1.7E-05 46.3 7.9 31 91-122 1-31 (314)
348 TIGR01316 gltA glutamate synth 91.3 1.3 2.8E-05 46.8 10.1 62 63-126 101-165 (449)
349 PRK13394 3-hydroxybutyrate deh 91.2 0.78 1.7E-05 44.0 7.8 35 90-125 4-39 (262)
350 PRK11559 garR tartronate semia 91.2 0.84 1.8E-05 45.3 8.2 32 94-126 3-34 (296)
351 PRK06194 hypothetical protein; 91.2 1.1 2.4E-05 43.7 8.9 35 91-126 4-39 (287)
352 TIGR01759 MalateDH-SF1 malate 91.1 0.5 1.1E-05 47.8 6.5 79 94-194 4-90 (323)
353 PRK12491 pyrroline-5-carboxyla 91.1 0.38 8.1E-06 47.5 5.5 90 93-214 2-96 (272)
354 PTZ00188 adrenodoxin reductase 91.1 1.1 2.4E-05 47.8 9.2 96 92-194 38-137 (506)
355 PRK06392 homoserine dehydrogen 91.0 0.98 2.1E-05 45.7 8.5 102 95-215 2-116 (326)
356 cd05294 LDH-like_MDH_nadp A la 91.0 0.29 6.4E-06 49.2 4.7 33 94-126 1-35 (309)
357 cd01337 MDH_glyoxysomal_mitoch 91.0 0.62 1.3E-05 46.9 6.9 76 95-194 2-79 (310)
358 cd05313 NAD_bind_2_Glu_DH NAD( 90.9 2.1 4.5E-05 41.8 10.2 38 89-126 34-71 (254)
359 PRK13303 L-aspartate dehydroge 90.9 2.1 4.5E-05 42.0 10.5 91 94-216 2-93 (265)
360 PRK08213 gluconate 5-dehydroge 90.9 1 2.2E-05 43.3 8.3 36 89-125 8-44 (259)
361 cd01493 APPBP1_RUB Ubiquitin a 90.9 0.27 5.8E-06 51.6 4.4 41 257-298 384-424 (425)
362 PRK08339 short chain dehydroge 90.8 0.87 1.9E-05 44.2 7.7 35 91-126 6-41 (263)
363 KOG3636 Uncharacterized conser 90.8 0.62 1.4E-05 48.1 6.7 106 351-457 309-427 (669)
364 PRK07035 short chain dehydroge 90.8 1.1 2.5E-05 42.7 8.5 35 90-125 5-40 (252)
365 PRK07814 short chain dehydroge 90.8 1.2 2.6E-05 43.1 8.6 35 91-126 8-43 (263)
366 PLN02780 ketoreductase/ oxidor 90.7 0.96 2.1E-05 45.5 8.2 62 92-173 52-114 (320)
367 PRK08818 prephenate dehydrogen 90.7 0.99 2.1E-05 46.5 8.3 35 91-125 2-37 (370)
368 PRK03369 murD UDP-N-acetylmura 90.7 1.5 3.2E-05 47.0 9.9 89 92-213 11-99 (488)
369 cd08281 liver_ADH_like1 Zinc-d 90.7 1.3 2.9E-05 45.2 9.3 33 93-125 192-224 (371)
370 PRK05708 2-dehydropantoate 2-r 90.7 0.27 5.8E-06 49.3 4.0 32 94-126 3-34 (305)
371 PLN03129 NADP-dependent malic 90.6 1.3 2.8E-05 47.9 9.2 103 89-214 317-434 (581)
372 TIGR01373 soxB sarcosine oxida 90.6 0.38 8.3E-06 49.9 5.3 43 93-135 30-73 (407)
373 PLN00141 Tic62-NAD(P)-related 90.6 2.7 5.9E-05 40.4 10.9 34 89-123 13-47 (251)
374 TIGR02279 PaaC-3OHAcCoADH 3-hy 90.6 0.43 9.2E-06 51.3 5.7 33 93-126 5-37 (503)
375 TIGR03466 HpnA hopanoid-associ 90.6 1.5 3.1E-05 43.6 9.3 31 95-126 2-33 (328)
376 PRK10669 putative cation:proto 90.5 0.95 2.1E-05 49.3 8.5 76 93-196 417-494 (558)
377 PRK06198 short chain dehydroge 90.5 1 2.2E-05 43.2 7.9 37 90-126 3-40 (260)
378 PRK04207 glyceraldehyde-3-phos 90.5 1.6 3.5E-05 44.5 9.6 38 178-216 73-110 (341)
379 PRK06181 short chain dehydroge 90.5 1.2 2.6E-05 42.8 8.4 31 94-125 2-33 (263)
380 smart00846 Gp_dh_N Glyceraldeh 90.5 0.35 7.7E-06 43.2 4.2 102 95-204 2-108 (149)
381 PTZ00431 pyrroline carboxylate 90.4 1.4 3E-05 43.0 8.7 82 93-213 3-88 (260)
382 PRK08268 3-hydroxy-acyl-CoA de 90.4 0.3 6.5E-06 52.6 4.3 32 94-126 8-39 (507)
383 PF10087 DUF2325: Uncharacteri 90.3 1.5 3.1E-05 36.0 7.5 71 147-219 10-86 (97)
384 PLN02928 oxidoreductase family 90.3 0.23 5E-06 50.8 3.2 104 89-215 155-262 (347)
385 PLN02253 xanthoxin dehydrogena 90.3 1.3 2.8E-05 43.2 8.5 35 90-125 15-50 (280)
386 COG0665 DadA Glycine/D-amino a 90.3 0.37 8E-06 49.3 4.8 43 92-135 3-45 (387)
387 PRK08057 cobalt-precorrin-6x r 90.3 2.6 5.7E-05 40.9 10.4 92 93-214 2-98 (248)
388 PRK06046 alanine dehydrogenase 90.2 1.1 2.4E-05 45.4 8.0 75 92-193 128-203 (326)
389 TIGR03451 mycoS_dep_FDH mycoth 90.2 1.7 3.6E-05 44.3 9.5 34 92-125 176-209 (358)
390 COG0300 DltE Short-chain dehyd 90.2 1.2 2.5E-05 43.7 7.8 80 91-191 4-92 (265)
391 PF11336 DUF3138: Protein of u 90.2 0.76 1.7E-05 47.2 6.6 60 13-72 23-86 (514)
392 PRK07792 fabG 3-ketoacyl-(acyl 90.2 1.1 2.4E-05 44.6 8.0 84 88-192 7-98 (306)
393 PLN02166 dTDP-glucose 4,6-dehy 90.1 1.6 3.4E-05 46.1 9.5 35 91-126 118-153 (436)
394 PRK12810 gltD glutamate syntha 90.1 1.8 4E-05 46.0 10.0 62 64-126 112-175 (471)
395 PRK06523 short chain dehydroge 90.1 0.99 2.1E-05 43.4 7.3 37 90-127 6-43 (260)
396 PRK05565 fabG 3-ketoacyl-(acyl 90.0 1.1 2.4E-05 42.4 7.5 31 90-120 2-33 (247)
397 PLN02657 3,8-divinyl protochlo 90.0 2.7 5.8E-05 43.6 10.9 33 92-125 59-92 (390)
398 PRK12748 3-ketoacyl-(acyl-carr 90.0 1.7 3.7E-05 41.7 8.9 36 90-126 2-40 (256)
399 PRK06124 gluconate 5-dehydroge 89.9 1.5 3.3E-05 41.9 8.5 36 90-126 8-44 (256)
400 cd08237 ribitol-5-phosphate_DH 89.9 0.89 1.9E-05 46.0 7.2 35 92-126 163-198 (341)
401 TIGR01296 asd_B aspartate-semi 89.9 1 2.2E-05 45.9 7.5 91 95-215 1-92 (339)
402 PLN02520 bifunctional 3-dehydr 89.9 0.34 7.4E-06 52.4 4.3 34 91-125 377-410 (529)
403 PRK14188 bifunctional 5,10-met 89.9 0.77 1.7E-05 45.8 6.4 77 90-217 155-232 (296)
404 PRK12829 short chain dehydroge 89.8 1.4 3.1E-05 42.2 8.3 36 89-125 7-43 (264)
405 PF04321 RmlD_sub_bind: RmlD s 89.8 0.82 1.8E-05 45.3 6.6 94 94-218 1-103 (286)
406 PLN02740 Alcohol dehydrogenase 89.8 2.1 4.6E-05 44.0 9.9 34 93-126 199-232 (381)
407 COG1712 Predicted dinucleotide 89.7 1.5 3.2E-05 41.8 7.7 87 95-215 2-91 (255)
408 cd05292 LDH_2 A subgroup of L- 89.7 0.42 9.1E-06 48.0 4.5 32 95-126 2-34 (308)
409 PRK11259 solA N-methyltryptoph 89.6 0.4 8.6E-06 49.0 4.4 35 93-128 3-37 (376)
410 PRK07232 bifunctional malic en 89.6 1 2.2E-05 50.6 7.7 60 68-127 142-221 (752)
411 PLN02572 UDP-sulfoquinovose sy 89.6 4.3 9.3E-05 42.9 12.2 38 88-126 42-80 (442)
412 PRK00683 murD UDP-N-acetylmura 89.6 1.4 3E-05 46.2 8.4 34 92-126 2-35 (418)
413 PF01266 DAO: FAD dependent ox 89.6 0.46 9.9E-06 47.5 4.7 34 95-129 1-34 (358)
414 PRK12814 putative NADPH-depend 89.5 1.9 4.2E-05 47.9 10.0 63 64-127 162-226 (652)
415 TIGR02622 CDP_4_6_dhtase CDP-g 89.5 0.95 2.1E-05 45.9 7.1 35 91-126 2-37 (349)
416 PTZ00079 NADP-specific glutama 89.5 2.7 5.8E-05 44.4 10.3 37 90-126 234-270 (454)
417 PRK07774 short chain dehydroge 89.5 1.7 3.7E-05 41.3 8.5 36 90-126 3-39 (250)
418 PRK12429 3-hydroxybutyrate deh 89.5 1.5 3.3E-05 41.7 8.2 34 91-125 2-36 (258)
419 PRK14031 glutamate dehydrogena 89.5 1.1 2.4E-05 47.1 7.5 37 90-126 225-261 (444)
420 PRK12409 D-amino acid dehydrog 89.4 0.41 8.8E-06 49.7 4.4 33 94-127 2-34 (410)
421 CHL00194 ycf39 Ycf39; Provisio 89.4 3.1 6.7E-05 41.6 10.6 95 95-217 2-111 (317)
422 PRK12775 putative trifunctiona 89.4 1.6 3.6E-05 50.9 9.6 97 92-194 429-528 (1006)
423 PRK06199 ornithine cyclodeamin 89.4 1.6 3.5E-05 45.2 8.6 76 93-193 155-233 (379)
424 PRK00811 spermidine synthase; 89.4 1.3 2.8E-05 43.9 7.6 35 92-127 76-110 (283)
425 PRK12861 malic enzyme; Reviewe 89.4 1.1 2.3E-05 50.4 7.6 60 69-128 147-226 (764)
426 COG0111 SerA Phosphoglycerate 89.3 0.53 1.1E-05 47.6 4.9 149 90-279 139-310 (324)
427 PRK12367 short chain dehydroge 89.2 0.56 1.2E-05 45.3 4.9 40 86-126 7-47 (245)
428 cd05297 GH4_alpha_glucosidase_ 89.2 0.96 2.1E-05 47.5 7.0 95 95-210 2-103 (423)
429 PLN02695 GDP-D-mannose-3',5'-e 89.2 1.9 4.2E-05 44.2 9.1 33 92-125 20-53 (370)
430 PRK13984 putative oxidoreducta 89.2 1.5 3.4E-05 48.1 8.9 35 92-127 282-316 (604)
431 PRK08655 prephenate dehydrogen 89.1 0.88 1.9E-05 48.0 6.6 31 95-126 2-33 (437)
432 PRK06914 short chain dehydroge 89.1 1.9 4.2E-05 41.9 8.7 34 92-126 2-36 (280)
433 PLN02896 cinnamyl-alcohol dehy 89.1 5.2 0.00011 40.5 12.2 33 92-125 9-42 (353)
434 PLN02353 probable UDP-glucose 89.1 0.62 1.4E-05 49.6 5.5 87 94-195 2-90 (473)
435 PRK13243 glyoxylate reductase; 89.1 0.37 8E-06 49.0 3.6 91 89-215 146-240 (333)
436 TIGR03206 benzo_BadH 2-hydroxy 89.0 1.8 3.9E-05 41.1 8.2 35 91-126 1-36 (250)
437 PRK11749 dihydropyrimidine deh 89.0 2 4.3E-05 45.5 9.3 34 92-126 139-172 (457)
438 PRK08303 short chain dehydroge 89.0 2.5 5.5E-05 42.2 9.5 36 90-126 5-41 (305)
439 PRK09853 putative selenate red 88.9 1.3 2.9E-05 51.2 8.2 36 91-127 537-572 (1019)
440 PRK06196 oxidoreductase; Provi 88.9 1.5 3.2E-05 43.9 7.8 36 90-126 23-59 (315)
441 cd05296 GH4_P_beta_glucosidase 88.9 1.7 3.7E-05 45.6 8.5 107 95-223 2-115 (419)
442 PRK09072 short chain dehydroge 88.9 2.2 4.8E-05 41.1 8.8 36 90-126 2-38 (263)
443 TIGR01214 rmlD dTDP-4-dehydror 88.8 2.4 5.3E-05 41.3 9.2 30 95-125 1-31 (287)
444 PRK07326 short chain dehydroge 88.8 1.5 3.2E-05 41.4 7.4 34 91-125 4-38 (237)
445 PRK07109 short chain dehydroge 88.8 1.7 3.6E-05 44.1 8.2 35 90-125 5-40 (334)
446 PRK13018 cell division protein 88.8 2.7 5.8E-05 43.4 9.6 101 91-213 26-147 (378)
447 PRK12831 putative oxidoreducta 88.8 2.5 5.3E-05 45.0 9.8 62 64-126 110-172 (464)
448 PRK06720 hypothetical protein; 88.7 2.6 5.7E-05 38.3 8.6 36 90-126 13-49 (169)
449 PRK03806 murD UDP-N-acetylmura 88.7 1.1 2.4E-05 47.1 7.0 35 91-126 4-38 (438)
450 PRK00421 murC UDP-N-acetylmura 88.7 1.9 4.1E-05 45.7 8.9 35 91-126 5-40 (461)
451 KOG0022 Alcohol dehydrogenase, 88.7 1.8 4E-05 43.2 7.9 97 92-212 192-292 (375)
452 TIGR02371 ala_DH_arch alanine 88.6 1.7 3.6E-05 44.0 8.0 74 93-193 128-202 (325)
453 PRK11730 fadB multifunctional 88.6 0.58 1.3E-05 52.6 5.0 33 94-127 314-346 (715)
454 PRK08594 enoyl-(acyl carrier p 88.6 2.3 5.1E-05 41.1 8.8 34 90-124 4-40 (257)
455 PF01408 GFO_IDH_MocA: Oxidore 88.5 1.1 2.4E-05 37.6 5.7 86 95-213 2-91 (120)
456 PLN02653 GDP-mannose 4,6-dehyd 88.5 2.4 5.1E-05 42.7 9.1 35 91-126 4-39 (340)
457 PRK05876 short chain dehydroge 88.5 2.3 5.1E-05 41.5 8.8 35 91-126 4-39 (275)
458 PRK09987 dTDP-4-dehydrorhamnos 88.4 3.8 8.1E-05 40.7 10.3 30 95-126 2-32 (299)
459 PF12847 Methyltransf_18: Meth 88.4 2.4 5.2E-05 34.9 7.6 78 92-191 1-78 (112)
460 PRK07666 fabG 3-ketoacyl-(acyl 88.3 2.1 4.5E-05 40.5 8.1 36 90-126 4-40 (239)
461 TIGR02437 FadB fatty oxidation 88.3 0.69 1.5E-05 51.9 5.4 33 94-127 314-346 (714)
462 PRK05086 malate dehydrogenase; 88.2 1.4 3E-05 44.4 7.1 33 94-126 1-36 (312)
463 PRK07453 protochlorophyllide o 88.2 1.5 3.3E-05 43.9 7.4 34 91-125 4-38 (322)
464 PRK06172 short chain dehydroge 88.2 2.3 5E-05 40.6 8.4 35 91-126 5-40 (253)
465 PRK12744 short chain dehydroge 88.1 2.6 5.7E-05 40.4 8.8 33 90-122 5-38 (257)
466 cd05197 GH4_glycoside_hydrolas 88.1 2.7 5.8E-05 44.2 9.3 106 95-223 2-114 (425)
467 TIGR01377 soxA_mon sarcosine o 88.0 0.61 1.3E-05 47.7 4.5 33 95-128 2-34 (380)
468 PRK06940 short chain dehydroge 88.0 2.3 4.9E-05 41.6 8.3 32 93-126 2-33 (275)
469 PRK14874 aspartate-semialdehyd 87.9 2.1 4.5E-05 43.5 8.2 90 94-215 2-94 (334)
470 PRK06932 glycerate dehydrogena 87.9 0.41 8.9E-06 48.2 3.0 87 89-215 143-233 (314)
471 PRK06487 glycerate dehydrogena 87.9 0.44 9.5E-06 48.1 3.2 86 89-215 144-233 (317)
472 PRK10309 galactitol-1-phosphat 87.9 3.6 7.7E-05 41.5 9.9 34 92-125 160-193 (347)
473 PRK08410 2-hydroxyacid dehydro 87.9 0.45 9.8E-06 47.9 3.3 88 89-215 141-232 (311)
474 PRK05335 tRNA (uracil-5-)-meth 87.8 0.59 1.3E-05 49.0 4.2 32 94-126 3-34 (436)
475 PRK08945 putative oxoacyl-(acy 87.8 2.9 6.3E-05 39.8 8.8 37 89-126 8-45 (247)
476 PRK05653 fabG 3-ketoacyl-(acyl 87.8 1.6 3.6E-05 41.0 7.0 35 91-126 3-38 (246)
477 PRK11154 fadJ multifunctional 87.7 0.7 1.5E-05 51.9 5.0 34 93-127 309-343 (708)
478 PRK04663 murD UDP-N-acetylmura 87.7 2.2 4.7E-05 45.0 8.5 37 90-126 3-41 (438)
479 PLN02712 arogenate dehydrogena 87.7 3 6.5E-05 46.5 9.8 35 90-125 366-400 (667)
480 TIGR03366 HpnZ_proposed putati 87.7 3.1 6.7E-05 40.7 9.1 34 92-125 120-153 (280)
481 COG0287 TyrA Prephenate dehydr 87.7 1.4 3E-05 43.7 6.5 33 93-126 3-35 (279)
482 PRK15076 alpha-galactosidase; 87.6 1 2.2E-05 47.5 5.8 107 94-223 2-118 (431)
483 cd08299 alcohol_DH_class_I_II_ 87.6 2.6 5.7E-05 43.2 8.9 34 93-126 191-224 (373)
484 PRK07890 short chain dehydroge 87.6 2.9 6.2E-05 40.0 8.7 34 91-125 3-37 (258)
485 TIGR01292 TRX_reduct thioredox 87.6 1.5 3.1E-05 43.0 6.7 32 95-127 2-33 (300)
486 PF02571 CbiJ: Precorrin-6x re 87.5 3.3 7.2E-05 40.3 9.0 93 94-213 1-98 (249)
487 PLN00016 RNA-binding protein; 87.4 2.2 4.7E-05 43.9 8.1 115 88-221 47-170 (378)
488 TIGR01472 gmd GDP-mannose 4,6- 87.4 3.5 7.6E-05 41.6 9.6 32 94-126 1-33 (343)
489 PRK00436 argC N-acetyl-gamma-g 87.4 1.8 3.8E-05 44.2 7.3 99 94-219 3-104 (343)
490 PRK08085 gluconate 5-dehydroge 87.4 2.8 6.1E-05 40.1 8.5 34 90-124 6-40 (254)
491 PRK08264 short chain dehydroge 87.4 0.74 1.6E-05 43.5 4.3 37 90-126 3-40 (238)
492 PLN02214 cinnamoyl-CoA reducta 87.3 2.9 6.3E-05 42.4 8.9 105 91-216 8-127 (342)
493 PRK06128 oxidoreductase; Provi 87.3 3.2 7E-05 41.0 9.1 34 89-123 51-85 (300)
494 PRK10217 dTDP-glucose 4,6-dehy 87.3 3.9 8.5E-05 41.3 9.9 32 94-125 2-34 (355)
495 PRK10537 voltage-gated potassi 87.0 2.9 6.2E-05 43.5 8.7 88 91-208 238-327 (393)
496 PRK00711 D-amino acid dehydrog 87.0 0.74 1.6E-05 47.8 4.4 32 95-127 2-33 (416)
497 PF01494 FAD_binding_3: FAD bi 86.9 0.63 1.4E-05 46.4 3.8 34 94-128 2-35 (356)
498 COG2084 MmsB 3-hydroxyisobutyr 86.9 4.6 9.9E-05 40.1 9.6 126 94-229 1-139 (286)
499 PRK08589 short chain dehydroge 86.9 2.6 5.7E-05 41.0 8.0 34 90-124 3-37 (272)
500 PLN02989 cinnamyl-alcohol dehy 86.9 2.9 6.2E-05 41.7 8.5 33 93-126 5-38 (325)
No 1
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3e-110 Score=800.51 Aligned_cols=393 Identities=55% Similarity=0.966 Sum_probs=370.8
Q ss_pred CCCCCCCHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccC
Q 012280 61 AVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHT 140 (467)
Q Consensus 61 ~~~~~l~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~ 140 (467)
.+...||.+|+.||+|||+||+||..||.+|++++|+||||||+||+++.||+.+|||+|+|||+|.||.||||||++|+
T Consensus 34 ~~~~~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ 113 (427)
T KOG2017|consen 34 SREAGLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHT 113 (427)
T ss_pred ccccCCCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCcc
Q 012280 141 EPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE 220 (467)
Q Consensus 141 ~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~ 220 (467)
++++|+.||++|+..++++||+++|..|+..++++|+++++++||+|+|||||+++||+|+|+|+.+|+|+|++++++++
T Consensus 114 ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~E 193 (427)
T KOG2017|consen 114 EARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWE 193 (427)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCCCCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEE
Q 012280 221 GQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVK 300 (467)
Q Consensus 221 G~l~v~~~~~~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~ 300 (467)
||+++|+++.+|||||+||.|||+.++++|.++|++||++|++|+|||+|+||+++|.++++++++++||++++.|++++
T Consensus 194 GQLtvYny~~GPCYRClFP~Ppp~~~vt~C~dgGVlGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r~ir 273 (427)
T KOG2017|consen 194 GQLTVYNYNNGPCYRCLFPNPPPPEAVTNCADGGVLGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFRTIR 273 (427)
T ss_pred ceeEEeecCCCceeeecCCCCcChHHhcccccCceeecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCccCCCCCcccccccccccccccCCCCCCcccccccCCCCCccCHHHHHHHhccCCCeEEEEecCccccccc
Q 012280 301 IRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTLPLKLNLLSADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIV 380 (467)
Q Consensus 301 ~~~~~~~C~~Cg~~~~~~~~~~~~~dy~~fcg~~~~~~~~~~~~l~~~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~ 380 (467)
+|+|++.|.+||+++++|.. +||+.|||++++..+ ++++|++++|||+.||+++++++++|++|||||..||+++
T Consensus 274 lR~r~~~C~~Cg~n~tit~~----~dYe~fCg~~~~~~~-~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~ 348 (427)
T KOG2017|consen 274 LRSRRPKCAVCGKNPTITSL----IDYELFCGSSATDKC-PLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEIC 348 (427)
T ss_pred eccCCCCCcccCCCCccCcc----cchhcccCCcccccc-chhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEE
Confidence 99999999999999999966 999999999988435 8899999999999999999999899999999999999999
Q ss_pred CCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcC-CCCeEEccccHHHHhhC
Q 012280 381 SLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLG-FTSARDIIGGLESWAND 459 (467)
Q Consensus 381 hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A~~~L~~~G-~~~v~~l~GGl~aW~~~ 459 (467)
|+|+|+|||+.++..... +.... ...+...+|+|+||+||+||+|++.|++.. ..+|+++.||+++|..+
T Consensus 349 ~lP~avNIPL~~l~~~~~---~~~~~------~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 349 RLPEAVNIPLKELRSRSG---KKLQG------DLNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred ecccccccchhhhhhhhh---hhhcc------cccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 999999999999877533 11111 111234789999999999999999999754 45688999999999999
Q ss_pred cCCCCCCC
Q 012280 460 VDPSFPVY 467 (467)
Q Consensus 460 ~dp~fP~y 467 (467)
+||+||.|
T Consensus 420 vd~~fP~Y 427 (427)
T KOG2017|consen 420 VDPNFPLY 427 (427)
T ss_pred cCcCCCCC
Confidence 99999998
No 2
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=2.1e-81 Score=643.75 Aligned_cols=378 Identities=42% Similarity=0.769 Sum_probs=341.8
Q ss_pred CCCHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCcc
Q 012280 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI 144 (467)
Q Consensus 65 ~l~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~di 144 (467)
.|+.++.+||+||+++|+||.++|++|++++|+||||||+||+++++|+++|||+|+|||+|.|+.+||+||+|++++||
T Consensus 10 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv 89 (390)
T PRK07411 10 QLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV 89 (390)
T ss_pred cCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEE
Q 012280 145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 224 (467)
Q Consensus 145 G~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~ 224 (467)
|++||++++++|+++||+++|+++...+++++..++++++|+||||+|++++|++||++|++.++|+|++++.|+.||+.
T Consensus 90 G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~ 169 (390)
T PRK07411 90 GKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQAT 169 (390)
T ss_pred CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEE
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeecc
Q 012280 225 VYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGR 304 (467)
Q Consensus 225 v~~~~~~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~~ 304 (467)
++.++.+|||+|+||.+|+....++|...|++||+++++|++||.||||+|+|.++++.++++.||+.+++|+.+++. +
T Consensus 170 v~~~~~~~c~~c~~~~~~~~~~~~~c~~~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~-~ 248 (390)
T PRK07411 170 VFNYEGGPNYRDLYPEPPPPGMVPSCAEGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLR-P 248 (390)
T ss_pred EECCCCCCChHHhcCCCCCcccCCCCccCCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEecc-C
Confidence 998888999999999877766678999999999999999999999999999999999999999999999999999998 8
Q ss_pred CCCCCccCCCCCcccccccccccccccCCCCCCcccccccCCCCCccCHHHHHHHhccCC-CeEEEEecCcccccccCCC
Q 012280 305 SSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTLPLKLNLLSADSRISSKEYKEKVVNGE-AHILVDVRPAHHFRIVSLP 383 (467)
Q Consensus 305 ~~~C~~Cg~~~~~~~~~~~~~dy~~fcg~~~~~~~~~~~~l~~~~rIs~~e~~~~l~~~~-~~~lIDVR~~~ef~~~hIp 383 (467)
+|+|++|.. . .+|+.|||....+.. ..........|+++|+.++++.+. +++|||||++.||+.+|||
T Consensus 249 ~~~c~~i~~------~----~~~~~~~G~~~~~~~-~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIp 317 (390)
T PRK07411 249 NPERPVIEK------L----IDYEQFCGIPQAKAA-EAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIP 317 (390)
T ss_pred CCCCCcccc------c----cchhhhccccccccc-ccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCC
Confidence 899998621 2 589999997653111 111124457899999999987653 6789999999999999999
Q ss_pred CceecCchhhhccc--hhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcC
Q 012280 384 NSINIPLSDLESRL--PEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVD 461 (467)
Q Consensus 384 gSinIP~~~l~~~~--~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~d 461 (467)
||+|||+.++.+.. +.+.+ . .++++|||||++|++|..|++.|+++||++ +.+.||+.+|.++++
T Consensus 318 GAiniP~~~l~~~~~~~~l~~----l--------~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~ 384 (390)
T PRK07411 318 GSVLVPLPDIENGPGVEKVKE----L--------LNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVD 384 (390)
T ss_pred CCEEccHHHhhcccchHHHhh----c--------CCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcC
Confidence 99999998876531 11111 1 235799999999999999999999999975 589999999999999
Q ss_pred CCCCCC
Q 012280 462 PSFPVY 467 (467)
Q Consensus 462 p~fP~y 467 (467)
|+||.|
T Consensus 385 p~~p~y 390 (390)
T PRK07411 385 PSVPQY 390 (390)
T ss_pred CCCCCC
Confidence 999998
No 3
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=1e-78 Score=625.24 Aligned_cols=376 Identities=42% Similarity=0.713 Sum_probs=341.4
Q ss_pred CCCCHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCc
Q 012280 64 YGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY 143 (467)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~d 143 (467)
..|+.++.+||+||+++++||.++|++|++++|+|||+||+||++|++|+++|||+|+|||+|.|+.+||+||++++++|
T Consensus 13 ~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~d 92 (392)
T PRK07878 13 AELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSD 92 (392)
T ss_pred cCCCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceE
Q 012280 144 IGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQL 223 (467)
Q Consensus 144 iG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l 223 (467)
||++|+++++++|+++||+++|+++...++.++..++++++|+||||+|++.+|++||++|+++++|||++++.|+.||+
T Consensus 93 iG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v 172 (392)
T PRK07878 93 VGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQA 172 (392)
T ss_pred CCChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 99999999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred EEEeC----CCCCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEE
Q 012280 224 TVYNY----NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIV 299 (467)
Q Consensus 224 ~v~~~----~~~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~ 299 (467)
.++.+ +.++||+|+|+.+++...+++|.+.|++||+++++|+++|.|+||+|+|.++++.++++.||+.+.+|+.+
T Consensus 173 ~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~ 252 (392)
T PRK07878 173 SVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCAEGGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTI 252 (392)
T ss_pred EEEecCCCCCCCCeeeeecCCCCCccCCCCCccCCccchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeE
Confidence 98863 36899999999877767778999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCccCCCCCcccccccccccccccCCCCCCcccccccCCCCCccCHHHHHHHhccCCCeEEEEecCcccccc
Q 012280 300 KIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTLPLKLNLLSADSRISSKEYKEKVVNGEAHILVDVRPAHHFRI 379 (467)
Q Consensus 300 ~~~~~~~~C~~Cg~~~~~~~~~~~~~dy~~fcg~~~~~~~~~~~~l~~~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~ 379 (467)
++. ++|+|+ .++.. .+|+.||+..... .+.......|+++|+.++++++.+.++||||++.+|..
T Consensus 253 ~~~-~~~~C~------~~~~~----~~~~~~c~~~~~~----~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ 317 (392)
T PRK07878 253 KIR-KDPSTP------KITEL----IDYEAFCGVVSDE----AQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDI 317 (392)
T ss_pred eec-cCCCCC------ccccc----ccchhhccccccc----ccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhc
Confidence 998 789994 33322 4899999864321 12245678899999999998766678999999999999
Q ss_pred cCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCeEEccccHHHHhhC
Q 012280 380 VSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWAND 459 (467)
Q Consensus 380 ~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~ 459 (467)
+|||||+|||+..+... ..+.+ .+++++|||||++|.+|..|++.|++.||++|+++.||+.+|...
T Consensus 318 ghIpGAinip~~~l~~~-~~~~~------------l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~ 384 (392)
T PRK07878 318 VHIPGAQLIPKSEILSG-EALAK------------LPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQ 384 (392)
T ss_pred CCCCCCEEcChHHhcch-hHHhh------------CCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHh
Confidence 99999999999887541 11111 123589999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 012280 460 VDPSFPVY 467 (467)
Q Consensus 460 ~dp~fP~y 467 (467)
+++.||+|
T Consensus 385 ~~~~~p~~ 392 (392)
T PRK07878 385 VDPSLPMY 392 (392)
T ss_pred cCCCCCCC
Confidence 99999998
No 4
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=2.4e-74 Score=585.13 Aligned_cols=352 Identities=35% Similarity=0.585 Sum_probs=317.5
Q ss_pred CHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCC
Q 012280 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQ 146 (467)
Q Consensus 67 ~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~ 146 (467)
...+.+||+||+++++||.++|++|++++|+|+|+||+||+++++|+++|||+|+|||+|.|+.|||+||+++++.|+|+
T Consensus 2 ~~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 81 (355)
T PRK05597 2 KNLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQ 81 (355)
T ss_pred ChHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEE
Q 012280 147 SKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVY 226 (467)
Q Consensus 147 ~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~ 226 (467)
+|+++++++|+++||+++|++++..++.+++.++++++|+||||+|++.+|+++|++|+++++|+|++++.|+.|++.++
T Consensus 82 ~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~ 161 (355)
T PRK05597 82 PKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVF 161 (355)
T ss_pred hHHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeeccCC
Q 012280 227 NYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSS 306 (467)
Q Consensus 227 ~~~~~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 306 (467)
.|+.+|||+|+|+..|+......|...|++||+++++|+++|.|+||+|+|.++++.++++.||+.+.+|+.+++. ++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~c~~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~-~~~ 240 (355)
T PRK05597 162 HAGHGPIYEDLFPTPPPPGSVPSCSQAGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVV-GNP 240 (355)
T ss_pred cCCCCCCHHHhCCCCCCccCCCCccccCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEecc-CCC
Confidence 8888999999999877766778999999999999999999999999999999999999999999999999999998 788
Q ss_pred CCCccCCCCCccccccccccccc-ccCCCCCCcccccccCCCCCccCHHHHHHHhccCCCeEEEEecCcccccccCCCCc
Q 012280 307 QCEACGENSTFTQDHFRNFDYEK-FTQSPLSTLPLKLNLLSADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNS 385 (467)
Q Consensus 307 ~C~~Cg~~~~~~~~~~~~~dy~~-fcg~~~~~~~~~~~~l~~~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgS 385 (467)
+|..+- +|.. ||+.. +++.+.++++++.++. ++.++||||++++|..+|||||
T Consensus 241 ~~~~~~-------------~~~~~~~~~~----------~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgA 294 (355)
T PRK05597 241 AVLERV-------------RGSTPVHGIS----------GGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGA 294 (355)
T ss_pred CCcccc-------------cccccccccc----------CCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCC
Confidence 875321 2222 44321 3455789999998654 2468999999999999999999
Q ss_pred eecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCeEEccccHHHHhh
Q 012280 386 INIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWAN 458 (467)
Q Consensus 386 inIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~ 458 (467)
+|||+.++....... . .+++++||+||+.|.+|..|++.|++.||++|+++.||+.+|.+
T Consensus 295 inip~~~l~~~~~~~--~-----------~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 295 HNVPLSAIREGANPP--S-----------VSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred EEeCHHHhhhccccc--c-----------CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 999998875532111 0 12357999999999999999999999999999999999999975
No 5
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.3e-73 Score=580.91 Aligned_cols=351 Identities=33% Similarity=0.589 Sum_probs=317.7
Q ss_pred CCCCHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCc
Q 012280 64 YGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY 143 (467)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~d 143 (467)
++|+.+|.+||+||++++.||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|++|||+||++++++|
T Consensus 12 ~~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~d 91 (370)
T PRK05600 12 MQLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASD 91 (370)
T ss_pred CCCCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceE
Q 012280 144 IGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQL 223 (467)
Q Consensus 144 iG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l 223 (467)
||++|+++++++|+++||+++|+++...+++++..++++++|+||||+|++.+|++||++|+++++|+|++++.|+.||+
T Consensus 92 iG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v 171 (370)
T PRK05600 92 VGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGEL 171 (370)
T ss_pred CCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEE
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEeCC---CCCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEE
Q 012280 224 TVYNYN---GGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVK 300 (467)
Q Consensus 224 ~v~~~~---~~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~ 300 (467)
.++.++ .++||+|+||..++.....+|...|++||+++++|+++|.|++|+|+|.++++.++++.||+.+++|+.++
T Consensus 172 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~~~gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~~~~ 251 (370)
T PRK05600 172 AVFNSGPDHRGVGLRDLFPEQPSGDSIPDCATAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSFR 251 (370)
T ss_pred EEEecCCCCCCCCcHhhCCCCCccccCCCCccCCcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEEEEE
Confidence 998864 37999999998776666789999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCccCCCCCcccccccccccccccCCCCCCcccccccCCCCCccCHHHHHHHhccCCCeEEEEecCccccccc
Q 012280 301 IRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTLPLKLNLLSADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIV 380 (467)
Q Consensus 301 ~~~~~~~C~~Cg~~~~~~~~~~~~~dy~~fcg~~~~~~~~~~~~l~~~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~ 380 (467)
+. ++|+|++|.... .+|+.| +|+++|+.+++.++ +.+|||||++.||..+
T Consensus 252 ~~-~~~~c~~~~~~~---------~~~~~~-------------------~~~~~el~~~l~~~-~~~lIDVR~~~E~~~g 301 (370)
T PRK05600 252 VG-ADPARPLVTRLR---------PSYEAA-------------------RTDTTSLIDATLNG-SATLLDVREPHEVLLK 301 (370)
T ss_pred ec-CCCCCCcccccc---------Ccchhc-------------------ccCHHHHHHHHhcC-CeEEEECCCHHHhhhc
Confidence 98 889999875321 355432 79999999998765 4689999999999999
Q ss_pred CCC---CceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCC-eEEccccHH
Q 012280 381 SLP---NSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTS-ARDIIGGLE 454 (467)
Q Consensus 381 hIp---gSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A~~~L~~~G~~~-v~~l~GGl~ 454 (467)
||| ||+|||++++.++.+.+.. +... + +.||||||++|.+|..|++.|++.||++ |+++.||+.
T Consensus 302 hI~~~~gAinIPl~~l~~~~~~~~~-l~~~--------~-~~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 302 DLPEGGASLKLPLSAITDDADILHA-LSPI--------D-GDNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred cCCCCCccEeCcHHHhhcchhhhhh-cccc--------C-CCcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 998 5999999998654211111 1111 2 2489999999999999999999999986 999999985
No 6
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=8.7e-62 Score=489.19 Aligned_cols=306 Identities=25% Similarity=0.422 Sum_probs=275.9
Q ss_pred HhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCcc--CCch
Q 012280 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI--GQSK 148 (467)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~di--G~~K 148 (467)
.+||+||++++.||.++|++|++++|+|||+||+||++|++|+++|||+|+|||.|.|+.+||+||+++.++|+ |++|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999 5699
Q ss_pred hHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeC
Q 012280 149 VKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY 228 (467)
Q Consensus 149 ~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~ 228 (467)
+++++++|+++||+++++++...++++++.++++++|+||+|+|++.+|++||++|+++++|||+++..|+.|++.++.|
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p 161 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIP 161 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECC
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999988888
Q ss_pred CCCCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEee-ccCCC
Q 012280 229 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIR-GRSSQ 307 (467)
Q Consensus 229 ~~~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~ 307 (467)
+.+|||+|+++.+|+.. ..|.+.|++||+++++|+++|.|+||+|+|.++++.++++.||..+.+++.+++. .++|+
T Consensus 162 ~~~pC~~Cl~~~~~~~~--~~c~~~gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~ 239 (339)
T PRK07688 162 GKTPCLRCLLQSIPLGG--ATCDTAGIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDN 239 (339)
T ss_pred CCCCCeEeecCCCCCCC--CCCccCCcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCC
Confidence 88999999999876544 5899999999999999999999999999999999999999999999999999876 36799
Q ss_pred CCccCCCCCccccccc-ccccccccCCCCCCccccccc-CCCCCccCHHHHHHHhc-c----CCCeEEEEecCccccccc
Q 012280 308 CEACGENSTFTQDHFR-NFDYEKFTQSPLSTLPLKLNL-LSADSRISSKEYKEKVV-N----GEAHILVDVRPAHHFRIV 380 (467)
Q Consensus 308 C~~Cg~~~~~~~~~~~-~~dy~~fcg~~~~~~~~~~~~-l~~~~rIs~~e~~~~l~-~----~~~~~lIDVR~~~ef~~~ 380 (467)
||+||.++.++..+.+ ..+++.|||.... ++ .....+|+++++.++++ . +.++.+||||++. |+++
T Consensus 240 Cp~Cg~~~~~~~~~~~~~~~~~~lcg~~~~------~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~ 312 (339)
T PRK07688 240 CPSCGEKALYPYLNYENTTKTAVLCGRNTV------QIRPPHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLV 312 (339)
T ss_pred CCCCCCCCCccccchhhccchhhhcCcccc------ccccCCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEE
Confidence 9999987654432222 2567799997442 23 34567899999999984 2 3578999999988 9999
Q ss_pred CCCCc
Q 012280 381 SLPNS 385 (467)
Q Consensus 381 hIpgS 385 (467)
+||+-
T Consensus 313 ~~~~g 317 (339)
T PRK07688 313 LFKDG 317 (339)
T ss_pred EEcCC
Confidence 99963
No 7
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=2.6e-57 Score=456.58 Aligned_cols=283 Identities=28% Similarity=0.450 Sum_probs=257.9
Q ss_pred HhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccC--Cch
Q 012280 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIG--QSK 148 (467)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG--~~K 148 (467)
.+||+||++++.||.++|++|++++|+|||+||+||++|++|+++|||+|+|||.|.|+.|||+||+|++++|+| ++|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred hHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeC
Q 012280 149 VKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY 228 (467)
Q Consensus 149 ~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~ 228 (467)
+++++++|+++||+++|+++...++.++..++++++|+||||+|++.+|++||++|+++++|||++++.|+.|++.++.|
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P 161 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIP 161 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECC
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeec-cCCC
Q 012280 229 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRG-RSSQ 307 (467)
Q Consensus 229 ~~~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~ 307 (467)
+.+|||+|+++..|... ..|...|+++|+++++|+++|.|++|+|+|..+++.++++.||..+.+++.+++.. |+|+
T Consensus 162 ~~tpC~~Cl~~~~p~~~--~~c~~~Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~~~~~k~p~ 239 (338)
T PRK12475 162 GKTPCLRCLMEHVPVGG--ATCDTAGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIKVNKQKKDT 239 (338)
T ss_pred CCCCCHHHhcCCCCCCC--CCCccCCcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEEeccCCCCC
Confidence 99999999998865433 46999999999999999999999999999999999999999999999999999962 5999
Q ss_pred CCccCCCCCccccccc-ccccccccCCCCCCcccccccCCC-CCccCHHHHHHHhc
Q 012280 308 CEACGENSTFTQDHFR-NFDYEKFTQSPLSTLPLKLNLLSA-DSRISSKEYKEKVV 361 (467)
Q Consensus 308 C~~Cg~~~~~~~~~~~-~~dy~~fcg~~~~~~~~~~~~l~~-~~rIs~~e~~~~l~ 361 (467)
||+||.++..+....+ ..+|+.+||.... ++.+. ..+++++++.+.++
T Consensus 240 Cp~Cg~~~~~~~l~~~~~~~~~~LCgr~~v------q~~~~~~~~~~~~~~~~~~~ 289 (338)
T PRK12475 240 CPSCGLTRTYPSLTFENQTKTEVLCGRNTV------QIRPGVRRRLNLEEIKKRLQ 289 (338)
T ss_pred CCcCCCCCcccccccccCCCeeeccCCcee------eeecCccCccCHHHHHHHHh
Confidence 9999987655443333 2679999997642 44444 47899999998886
No 8
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=2.4e-56 Score=431.45 Aligned_cols=241 Identities=43% Similarity=0.758 Sum_probs=230.2
Q ss_pred CCCHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCcc
Q 012280 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI 144 (467)
Q Consensus 65 ~l~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~di 144 (467)
.|+.+|.+||+||++|+.||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+||++++++||
T Consensus 4 ~l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv 83 (245)
T PRK05690 4 ELSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI 83 (245)
T ss_pred CCCHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEE
Q 012280 145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 224 (467)
Q Consensus 145 G~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~ 224 (467)
|++|+++++++|+++||+++|++++..+++++..++++++|+||+|+|++.+|+++|++|+++++|+|++++.|+.|++.
T Consensus 84 G~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~ 163 (245)
T PRK05690 84 GQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVT 163 (245)
T ss_pred CChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEE
Confidence 99999999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred EEeCCC-CCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeec
Q 012280 225 VYNYNG-GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRG 303 (467)
Q Consensus 225 v~~~~~-~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~ 303 (467)
++.|+. +|||+|+++..+... ..|...|++||+++++|+++|+|++|+|+|.++++.++++.||..+.+++.+++.
T Consensus 164 ~~~~~~~~~c~~c~~~~~~~~~--~~~~~~gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~~~~~~~- 240 (245)
T PRK05690 164 VFTYQDDEPCYRCLSRLFGENA--LTCVEAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKLK- 240 (245)
T ss_pred EEecCCCCceeeeccCCCCCCC--CCcccCCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEEcC-
Confidence 998764 799999998765432 3799999999999999999999999999999999999999999999999999997
Q ss_pred cCCCC
Q 012280 304 RSSQC 308 (467)
Q Consensus 304 ~~~~C 308 (467)
|+|+|
T Consensus 241 ~~~~C 245 (245)
T PRK05690 241 RDPGC 245 (245)
T ss_pred CCcCC
Confidence 88988
No 9
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=8.2e-56 Score=425.99 Aligned_cols=238 Identities=41% Similarity=0.762 Sum_probs=224.8
Q ss_pred HhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhH
Q 012280 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK 150 (467)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~ 150 (467)
++||+||++++.||.++|++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+++||+||+++.++|||++|++
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~ 81 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE 81 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence 58999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeC-C
Q 012280 151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-N 229 (467)
Q Consensus 151 ~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~-~ 229 (467)
+++++|+++||+++|++++..++.++..++++++|+||||+|++.+|++||++|+++++|+|++++.|+.|++.++.+ +
T Consensus 82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~ 161 (240)
T TIGR02355 82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQD 161 (240)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCC
Confidence 999999999999999999999998888899999999999999999999999999999999999999999999987764 4
Q ss_pred CCCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeeccCCCCC
Q 012280 230 GGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCE 309 (467)
Q Consensus 230 ~~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~C~ 309 (467)
.+|||+|+++..+.. ...|...|++||+++++|+++|.|+||+|+|.++++.++++.||+.+.+++.+++. |+|+|+
T Consensus 162 ~~~c~~C~~~~~~~~--~~~~~~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~~~~~~-~~~~C~ 238 (240)
T TIGR02355 162 GEPCYRCLSRLFGEN--ALSCVEAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKLP-KNPTCP 238 (240)
T ss_pred CCCccccccccCCCC--CCCccccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEecc-CCccCC
Confidence 679999997655432 24688899999999999999999999999999999999999999999999999998 899999
Q ss_pred cc
Q 012280 310 AC 311 (467)
Q Consensus 310 ~C 311 (467)
+|
T Consensus 239 ~C 240 (240)
T TIGR02355 239 VC 240 (240)
T ss_pred CC
Confidence 99
No 10
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=2.1e-55 Score=427.44 Aligned_cols=229 Identities=26% Similarity=0.349 Sum_probs=218.9
Q ss_pred HhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhH
Q 012280 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK 150 (467)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~ 150 (467)
.+||+||+.+ ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.||||||++++++|||++|++
T Consensus 7 ~~~ysRq~~~--iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve 84 (287)
T PRK08223 7 DEAFCRNLGW--ITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAE 84 (287)
T ss_pred HHHHhhhhhh--cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHH
Confidence 3899999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCCh--hHHHHHHHHHHHcCCcEEEEeecCccceEEEEeC
Q 012280 151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA--PSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY 228 (467)
Q Consensus 151 ~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~--~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~ 228 (467)
+++++|+++||+++|++++..++++|+.++++++|+||||+|++ ++|+++|++|+++++|+|+++..|+.||+.++.|
T Consensus 85 ~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p 164 (287)
T PRK08223 85 VLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDP 164 (287)
T ss_pred HHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcC
Confidence 99999999999999999999999999999999999999999996 8999999999999999999999999999999987
Q ss_pred CCCCceeecCCC---CCC--------ccccccccCCCcc----------------cchHHHHHHHHHHHHHHHHhcCCCC
Q 012280 229 NGGPCYRCLFPT---PPP--------TTACQRCADSGVL----------------GVVPGIIGCLQALEAIKVASAVGEP 281 (467)
Q Consensus 229 ~~~~C~~C~~~~---~~~--------~~~~~~c~~~g~~----------------g~~~~v~g~l~A~e~ik~l~g~~~~ 281 (467)
+ +|||+|+||. +|+ +..+++|.+.|++ |++++++|++||.|+||+++|.+++
T Consensus 165 ~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~~~~~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~ 243 (287)
T PRK08223 165 G-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADPSRVDLENRTGPSTGLACQLCAGVVATEVLKILLGRGRV 243 (287)
T ss_pred C-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccccccccccccCCCccchHHHHHHHHHHHHHHHHhCCCCc
Confidence 5 8999999998 554 2567899999999 9999999999999999999999998
Q ss_pred C-CCceeEeecCCCeEEEEEee
Q 012280 282 L-SGRMLLFDALSARIRIVKIR 302 (467)
Q Consensus 282 ~-~~~~~~~d~~~~~~~~~~~~ 302 (467)
+ .++++.||+.+++|.+..++
T Consensus 244 ~~~~~~~~~d~~~~~~~~~~~~ 265 (287)
T PRK08223 244 YAAPWFHQFDAYRSRYVRTWRP 265 (287)
T ss_pred CCCCeEEEEEcCCceEEEEEec
Confidence 5 79999999999999999887
No 11
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=6.2e-55 Score=447.51 Aligned_cols=267 Identities=49% Similarity=0.884 Sum_probs=250.5
Q ss_pred CCCCCHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCC
Q 012280 63 DYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEP 142 (467)
Q Consensus 63 ~~~l~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~ 142 (467)
...++.++.+||+||+.|+.||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||++++++
T Consensus 105 ~~~~s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~ 184 (376)
T PRK08762 105 PRLLTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTED 184 (376)
T ss_pred ccCCCHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccce
Q 012280 143 YIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQ 222 (467)
Q Consensus 143 diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~ 222 (467)
|||++|+++++++|+++||+++++++...++.++..++++++|+||+|+|++++|+++|++|+++++|+|+++..|+.|+
T Consensus 185 diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~ 264 (376)
T PRK08762 185 RVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ 264 (376)
T ss_pred hCCCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 99999999999999999999999999999988888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC----CCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEE
Q 012280 223 LTVYNYNG----GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRI 298 (467)
Q Consensus 223 l~v~~~~~----~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~ 298 (467)
+.++.|+. ++||+|+|+..+.....++|...|++||+++++|+|+|+|++|+|+|.++++.++++.||..+.+|+.
T Consensus 265 v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~~ 344 (376)
T PRK08762 265 VSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAEAGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFRE 344 (376)
T ss_pred EEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCccCCcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEE
Confidence 99988765 89999999887666666789999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCccCCCCCcccccccccccccccCCC
Q 012280 299 VKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSP 334 (467)
Q Consensus 299 ~~~~~~~~~C~~Cg~~~~~~~~~~~~~dy~~fcg~~ 334 (467)
+++. |+|+|++||.++.++.- +||.+||+..
T Consensus 345 ~~~~-~~~~C~~C~~~~~~~~~----~~~~~~~~~~ 375 (376)
T PRK08762 345 LRLP-PDPHCPVCAPGRPFPGY----IDYAAFCAGA 375 (376)
T ss_pred Eecc-CCCCCCCCCCCCCcCcc----cchhhhhCCC
Confidence 9998 99999999986554422 7999999654
No 12
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=7.2e-52 Score=397.08 Aligned_cols=229 Identities=37% Similarity=0.602 Sum_probs=217.8
Q ss_pred CCHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccC
Q 012280 66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIG 145 (467)
Q Consensus 66 l~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG 145 (467)
|+.+|.+||+||+++ ||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+||+++.++|+|
T Consensus 2 l~~~~~~ry~Rq~~~--~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG 79 (231)
T PRK08328 2 LSERELERYDRQIMI--FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLG 79 (231)
T ss_pred CCHHHHHHHhhHHHh--cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcC
Confidence 788899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-chhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEE
Q 012280 146 Q-SKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 224 (467)
Q Consensus 146 ~-~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~ 224 (467)
+ +|+++++++|+++||+++|+++...+++++..++++++|+||||+|++.+|++++++|+++++|+|+++..|+.|++.
T Consensus 80 ~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~ 159 (231)
T PRK08328 80 KNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVT 159 (231)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEE
Confidence 9 599999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEe
Q 012280 225 VYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 301 (467)
Q Consensus 225 v~~~~~~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~ 301 (467)
++.|+.++||+|+||..+. .+...|++||+++++|+++|+|++|+++|.++++.++++.||+.+..|+.+++
T Consensus 160 ~~~p~~~~c~~~~~~~~~~-----~~~~~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~~~~~~ 231 (231)
T PRK08328 160 TIVPGKTKRLREIFPKVKK-----KKGKFPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL 231 (231)
T ss_pred EECCCCCCCHHHhCCCCCC-----ccccCCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEEEEeeC
Confidence 9999999999999987542 35567899999999999999999999999999999999999999999988763
No 13
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=4.5e-50 Score=384.68 Aligned_cols=228 Identities=57% Similarity=0.996 Sum_probs=217.2
Q ss_pred hcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHH
Q 012280 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA 152 (467)
Q Consensus 73 ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~ 152 (467)
||+||+++++||.++|++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+++||+||+++.++|+|++|++++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeCCCCC
Q 012280 153 AATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGP 232 (467)
Q Consensus 153 ~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~~~~~ 232 (467)
+++|+++||+++|+.++..++.++..++++++|+||+|+|++.+|.+++++|+++++|+|+++..|+.|++.++.|+.++
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~~~~ 160 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGP 160 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCCCCC
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999998898899
Q ss_pred ceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEe
Q 012280 233 CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 301 (467)
Q Consensus 233 C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~ 301 (467)
||.|.++..+... ...|...|+++|+++++|+|+|.|++|+|+|.++++.++++.||..++.|+++++
T Consensus 161 c~~c~~~~~~~~~-~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~~~~~~ 228 (228)
T cd00757 161 CYRCLFPEPPPPG-VPSCAEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL 228 (228)
T ss_pred CccccCCCCCCCC-CCccccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEEEEEeC
Confidence 9999998765432 4578889999999999999999999999999998888999999999999998864
No 14
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=6.4e-50 Score=389.94 Aligned_cols=248 Identities=51% Similarity=0.889 Sum_probs=236.1
Q ss_pred CCCHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCcc
Q 012280 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI 144 (467)
Q Consensus 65 ~l~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~di 144 (467)
.|+..+++||+||++++.+|.++|++|++++|+|+|+||+||+++++|+++|||+++|+|+|.|+.+||+||++|+++|+
T Consensus 2 ~~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di 81 (254)
T COG0476 2 MLSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV 81 (254)
T ss_pred CccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc
Confidence 37889999999999998888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEE
Q 012280 145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 224 (467)
Q Consensus 145 G~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~ 224 (467)
|++|++++++.|+++||+++++++...++.+++.++++++|+|+||+|++.+|+++|++|+.+++|++++++.|+.|+++
T Consensus 82 g~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~ 161 (254)
T COG0476 82 GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVT 161 (254)
T ss_pred CCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCC-CCCceeecCCCCCCccccc-cccCCCcccchHHHHHHHHHHHHHHHHhcCC-CCCCCceeEeecCCC-eEEEEE
Q 012280 225 VYNYN-GGPCYRCLFPTPPPTTACQ-RCADSGVLGVVPGIIGCLQALEAIKVASAVG-EPLSGRMLLFDALSA-RIRIVK 300 (467)
Q Consensus 225 v~~~~-~~~C~~C~~~~~~~~~~~~-~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~-~~~~~~~~~~d~~~~-~~~~~~ 300 (467)
++.++ .++||+|+++..|+...+. .|.+.|+++++++++|+++|.|++|+++|.+ +++.++++.||.... .|++++
T Consensus 162 ~~~~~~~~~c~~~~~~~~~~~~~~~~~c~~~gv~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (254)
T COG0476 162 VIIPGDKTPCYRCLFPEKPPPGLVPTSCDEAGVLGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTLK 241 (254)
T ss_pred EEecCCCCCcccccCCCCCCccccccccccCCccccccchhhhHHHHHHHHHhcCCCccccccceeeeechhcccchhhh
Confidence 99998 5999999999998766655 5999999999999999999999999999999 888899999999998 899999
Q ss_pred eeccCCCCCccC
Q 012280 301 IRGRSSQCEACG 312 (467)
Q Consensus 301 ~~~~~~~C~~Cg 312 (467)
.......|++||
T Consensus 242 ~~~~~~~~~~c~ 253 (254)
T COG0476 242 LRRRPISCPVCG 253 (254)
T ss_pred cccCCCCCCcCC
Confidence 984444599998
No 15
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=1.3e-48 Score=389.73 Aligned_cols=238 Identities=18% Similarity=0.225 Sum_probs=216.5
Q ss_pred CCCCHHHHhhcccccccCC-CC-HHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCC
Q 012280 64 YGLSPDMIYRYSRHLLLPS-FG-VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTE 141 (467)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~~-~G-~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~ 141 (467)
++|+.++++||+||+.++. || .++|++|++++|+ +||+|++++.+|++ |||+|+|||+|.|+.|||+ ++|++
T Consensus 45 ~~l~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~ 118 (318)
T TIGR03603 45 ETLTKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSK 118 (318)
T ss_pred hccCHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhCh
Confidence 4699999999999999987 57 5589999999999 99999999999999 9999999999999999999 99999
Q ss_pred CccCCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHH--HHHHHHHcCCcEEEEeecCc
Q 012280 142 PYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYM--ISDCCVVLGKPLVSGAALGL 219 (467)
Q Consensus 142 ~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~--i~~~~~~~~~p~i~~~~~g~ 219 (467)
+|||++|+++|+++|.++||+++++.+ .++++++|+||||+|++.+|++ +|++|++.++|||++++.|+
T Consensus 119 ~diG~~K~~~a~~~L~~lnp~v~i~~~---------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~ 189 (318)
T TIGR03603 119 EFILKKDIRDLTSNLDALELTKNVDEL---------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGP 189 (318)
T ss_pred hhcCcHHHHHHHHHHHHhCCCCEEeeH---------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccC
Confidence 999999999999999999999998753 4678899999999999999977 99999999999999999999
Q ss_pred cceEEEEeCCCCCceeecCCCC-------------C-CccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCC-CCC
Q 012280 220 EGQLTVYNYNGGPCYRCLFPTP-------------P-PTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEP-LSG 284 (467)
Q Consensus 220 ~G~l~v~~~~~~~C~~C~~~~~-------------~-~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~-~~~ 284 (467)
.||+.++.|+.+|||+|+++.. + ......+|...|++||+++++|+|+|.||+ +++|.+++ +.+
T Consensus 190 ~Gqv~~~~P~~t~C~~Cl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g 268 (318)
T TIGR03603 190 FVFITCTLPPETGCFECLERRLLSRLDWRLYGVFTEYLVKAENNVSTAELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEG 268 (318)
T ss_pred EEEEEEEeCCCCCcHHHccchhhcccccccccccccccCCCCCCCccCCeehhHHHHHHHHHHHHHH-HHhCCCCcccCC
Confidence 9999988888899999998821 0 012235799999999999999999999999 99998886 579
Q ss_pred ceeEeecCCCeEEEEEeeccCCCCCccCCCCCcc
Q 012280 285 RMLLFDALSARIRIVKIRGRSSQCEACGENSTFT 318 (467)
Q Consensus 285 ~~~~~d~~~~~~~~~~~~~~~~~C~~Cg~~~~~~ 318 (467)
+++.||..+.+++.+++. |+|+||+||....+.
T Consensus 269 ~ll~id~~t~~~~~~~l~-k~p~Cp~CG~~~~~~ 301 (318)
T TIGR03603 269 RLLSINLPTLEIQFQDIL-KQSCCSTCGTFNKIK 301 (318)
T ss_pred eEEEEECCCCeEEEEecC-CCCCCcccCCccccc
Confidence 999999999999999998 899999999876553
No 16
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=2.3e-48 Score=365.81 Aligned_cols=201 Identities=49% Similarity=0.874 Sum_probs=192.5
Q ss_pred hcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHH
Q 012280 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA 152 (467)
Q Consensus 73 ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~ 152 (467)
||+||++++.||.++|++|++++|+|+|+||+|++++++|+++|+|+|+|+|+|.|+++||+||++++++|+|++|++++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeCC-CC
Q 012280 153 AATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN-GG 231 (467)
Q Consensus 153 ~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~~-~~ 231 (467)
+++|+++||++++++++..+++++..++++++|+||+|+|++++|++++++|+++++|+|.++..|+.|++.++.|+ .+
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~ 160 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEG 160 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCCCC
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999987 79
Q ss_pred CceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHH
Q 012280 232 PCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVA 275 (467)
Q Consensus 232 ~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l 275 (467)
|||+|+|+..+ ...++|...|+++|+++++|+|+|+|++|++
T Consensus 161 ~c~~c~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~e~~k~l 202 (202)
T TIGR02356 161 PCLRCLFPDIA--DTGPSCATAGVIGPVVGVIGSLQALEALKLL 202 (202)
T ss_pred CChhhcCCCCc--ccCCCCccCCccchHHHHHHHHHHHHHHHhC
Confidence 99999998843 2356899999999999999999999999985
No 17
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=1.1e-43 Score=332.19 Aligned_cols=193 Identities=26% Similarity=0.429 Sum_probs=181.3
Q ss_pred HhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhH
Q 012280 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK 150 (467)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~ 150 (467)
++||+||+++ ||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+||++++++|+|++|++
T Consensus 1 ~~~Y~Rqi~l--~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~ 78 (197)
T cd01492 1 IALYDRQIRL--WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAE 78 (197)
T ss_pred CchhhHHHHH--hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHH
Confidence 3799999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeCCC
Q 012280 151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNG 230 (467)
Q Consensus 151 ~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~~~ 230 (467)
+++++|+++||+++|+++...++ ++..++++++|+||+|+|+..++..+|++|+++++|+|.++..|+.|++....
T Consensus 79 a~~~~L~~lNp~v~i~~~~~~~~-~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~--- 154 (197)
T cd01492 79 ASLERLRALNPRVKVSVDTDDIS-EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFADL--- 154 (197)
T ss_pred HHHHHHHHHCCCCEEEEEecCcc-ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEec---
Confidence 99999999999999999998887 45678899999999999999999999999999999999999999999876421
Q ss_pred CCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCe
Q 012280 231 GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR 295 (467)
Q Consensus 231 ~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~ 295 (467)
++|+++++|+++|+|++|+++|.++++. .++.||..+..
T Consensus 155 -------------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~-~~~~~d~~~~~ 193 (197)
T cd01492 155 -------------------------LAPVAAVVGGILAQDVINALSKRESPLN-NFFVFDGETSE 193 (197)
T ss_pred -------------------------cccHHHHHHHHHHHHHHHHHhCCCCccC-cEEEEECCCCc
Confidence 8899999999999999999999998874 58899998754
No 18
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.2e-42 Score=325.74 Aligned_cols=189 Identities=26% Similarity=0.406 Sum_probs=177.9
Q ss_pred hcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCC--CccCCchhH
Q 012280 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTE--PYIGQSKVK 150 (467)
Q Consensus 73 ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~--~diG~~K~~ 150 (467)
+|+||+++ ||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+|++||+++++ .|+|++|++
T Consensus 1 ~y~Rqi~l--~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~ 78 (198)
T cd01485 1 LYDRQIRL--WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAA 78 (198)
T ss_pred Cccceeec--cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHH
Confidence 69999999 99999999999999999999999999999999999999999999999999999999988 899999999
Q ss_pred HHHHHHHhhCCCcEEEEccccCC--cccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeC
Q 012280 151 SAAATCRSINSTVHIIEHREALR--TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY 228 (467)
Q Consensus 151 ~~~~~l~~lnp~v~v~~~~~~~~--~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~ 228 (467)
+++++|+++||+++|+++...++ .++..++++++|+||+|+|+...+..+|++|+++++|+|++++.|+.|++.+..
T Consensus 79 ~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~- 157 (198)
T cd01485 79 ASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF- 157 (198)
T ss_pred HHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEch-
Confidence 99999999999999999988876 566788899999999999999999999999999999999999999999986421
Q ss_pred CCCCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCC
Q 012280 229 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSA 294 (467)
Q Consensus 229 ~~~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~ 294 (467)
|+++++|+++|.|++|+++|.++++ ++++.||+.+.
T Consensus 158 -----------------------------p~~~~~~~~~~~e~~k~l~~~~~~~-~~~~~~d~~~~ 193 (198)
T cd01485 158 -----------------------------PIAAFLGGVVAQEAIKSISGKFTPL-NNLYIYDGFES 193 (198)
T ss_pred -----------------------------hHHHHHHHHHHHHHHHHHhCCCCcc-CcEEEEECccc
Confidence 8999999999999999999998886 78999998765
No 19
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=7e-41 Score=327.95 Aligned_cols=215 Identities=27% Similarity=0.459 Sum_probs=189.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~ 174 (467)
||+|||+||+||+++++|+++|||+|+|+|.|.|+.|||+||||++++|||++||++++++|+++||+++|+++...+++
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHc--------CCcEEEEeecCccceEEEEeCCCCCceeecCCCCCCccc
Q 012280 175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVL--------GKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTA 246 (467)
Q Consensus 175 ~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~--------~~p~i~~~~~g~~G~l~v~~~~~~~C~~C~~~~~~~~~~ 246 (467)
. ..++++++|+||+|+|+.++|.++|+.|... ++|+|++++.|+.|++.++.|+.++||+|.+...|+...
T Consensus 81 ~-~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~ 159 (291)
T cd01488 81 K-DEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVT 159 (291)
T ss_pred h-hHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCC
Confidence 4 4688999999999999999999999988664 499999999999999999999999999999875544333
Q ss_pred ccccc------------C-------------------------------------------------------CCcccch
Q 012280 247 CQRCA------------D-------------------------------------------------------SGVLGVV 259 (467)
Q Consensus 247 ~~~c~------------~-------------------------------------------------------~g~~g~~ 259 (467)
.+.|. + -++++.+
T Consensus 160 ~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~st 239 (291)
T cd01488 160 FPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVAST 239 (291)
T ss_pred CCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCch
Confidence 33221 0 2457788
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCe-EEEEEeeccCCCCCccC
Q 012280 260 PGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR-IRIVKIRGRSSQCEACG 312 (467)
Q Consensus 260 ~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~C~~Cg 312 (467)
++++|++++.|++|++++..+.+ +.+++|++..+. ..++++. |+|+|++||
T Consensus 240 naiia~~~~~~~~k~~~~~~~~~-~n~~~~~g~~g~~~~~~~~~-~~~~c~~c~ 291 (291)
T cd01488 240 NAIIAAACCLEALKIATDCYENL-NNYLMYNGVDGCYTYTFEHE-RKEDCPVCS 291 (291)
T ss_pred HHHHHHHHHHHHHHHHhccccCC-CceEEEecCCceEEEEEEEe-eCCCCCCCC
Confidence 99999999999999999987765 457889998876 4556665 999999997
No 20
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=4.1e-40 Score=322.16 Aligned_cols=210 Identities=26% Similarity=0.403 Sum_probs=185.3
Q ss_pred hcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHH
Q 012280 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA 152 (467)
Q Consensus 73 ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~ 152 (467)
.||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|||++|++++
T Consensus 1 lYsRQl~~--~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~ 78 (286)
T cd01491 1 LYSRQLYV--LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEAS 78 (286)
T ss_pred Ccccceec--cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHH
Confidence 49999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeCCCCC
Q 012280 153 AATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGP 232 (467)
Q Consensus 153 ~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~~~~~ 232 (467)
+++|+++||+++|+++...++ .+++.++|+||+|.|+...+..||++|+++++|+|.+++.|+.|++++ .-++
T Consensus 79 ~~~L~eLNp~V~V~~~~~~~~----~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~---dfg~ 151 (286)
T cd01491 79 QARLAELNPYVPVTVSTGPLT----TDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC---DFGD 151 (286)
T ss_pred HHHHHHHCCCCEEEEEeccCC----HHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe---cCCC
Confidence 999999999999999987755 367789999999999999999999999999999999999999999876 3469
Q ss_pred ceeecCCCCCCccccc------------ccc-------------------------------------------------
Q 012280 233 CYRCLFPTPPPTTACQ------------RCA------------------------------------------------- 251 (467)
Q Consensus 233 C~~C~~~~~~~~~~~~------------~c~------------------------------------------------- 251 (467)
||.|..+..+++.+.. .|.
T Consensus 152 ~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~~~f~i~d~~~~~ 231 (286)
T cd01491 152 EFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSIGDTSSFS 231 (286)
T ss_pred eEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCCCeEEECcCcCcC
Confidence 9999865432222110 010
Q ss_pred ---CCCc-----ccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecC
Q 012280 252 ---DSGV-----LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDAL 292 (467)
Q Consensus 252 ---~~g~-----~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~ 292 (467)
.+|. +.|+.+++|+++|+|+||.++|...|+. +++.||..
T Consensus 232 ~y~~gG~~~qvK~~~~~~~~g~~~~q~~~~~~~~~~~p~~-q~~~~~~~ 279 (286)
T cd01491 232 EYIRGGIVTQVKLSPMAAFFGGLAAQEVLKACSGKFTPLK-QWLYFDAL 279 (286)
T ss_pred ccccCcEEEEEecccHHHHhhhHHHHHHHHHcCCCCCcee-eEEEecHH
Confidence 0222 5699999999999999999999999975 68888875
No 21
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=4.5e-39 Score=338.23 Aligned_cols=235 Identities=22% Similarity=0.328 Sum_probs=191.9
Q ss_pred hcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCcc---CCchh
Q 012280 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI---GQSKV 149 (467)
Q Consensus 73 ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~di---G~~K~ 149 (467)
++-|-.++|++|. ++|++++|+|||||||||++|++|+++|||+|+|||+|.|+.|||+||+||+.+|+ |++||
T Consensus 321 kLmkWRllP~l~~---ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA 397 (664)
T TIGR01381 321 KLMKWRLHPDLQL---ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKA 397 (664)
T ss_pred HHHhhhcCChhhH---HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHH
Confidence 5556667777765 89999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEccccC-------Cc----------ccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEE
Q 012280 150 KSAAATCRSINSTVHIIEHREAL-------RT----------SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV 212 (467)
Q Consensus 150 ~~~~~~l~~lnp~v~v~~~~~~~-------~~----------~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i 212 (467)
++|+++|+++||+++++.+...+ ++ +++.++++++|+|++|+||+++|++++++|..+++|+|
T Consensus 398 ~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI 477 (664)
T TIGR01381 398 ETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAI 477 (664)
T ss_pred HHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999988774 43 35678899999999999999999999999999999999
Q ss_pred EEeecCccceEEEEeC------------------CCCCceeec---CCCCCCccc--cccccCCCcccchHHHHHHHHHH
Q 012280 213 SGAALGLEGQLTVYNY------------------NGGPCYRCL---FPTPPPTTA--CQRCADSGVLGVVPGIIGCLQAL 269 (467)
Q Consensus 213 ~~~~~g~~G~l~v~~~------------------~~~~C~~C~---~~~~~~~~~--~~~c~~~g~~g~~~~v~g~l~A~ 269 (467)
++ +.|+.|++.+.+. ...+||+|. +|..+.... -+.|. |++|..+++|+++|.
T Consensus 478 ~a-AlGfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCt---VtrPgv~~ias~~Av 553 (664)
T TIGR01381 478 SA-ALGFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCT---VTRPGTAMIASGLAV 553 (664)
T ss_pred EE-EeccceEEEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccccce---EecchHHHHHHHHHH
Confidence 98 5899999988631 258899999 554433211 14677 999999999999999
Q ss_pred HHHHHHhcCCCCC----CC----ceeE-----eecCCCeEEEEEee-ccCCCCCccCCC
Q 012280 270 EAIKVASAVGEPL----SG----RMLL-----FDALSARIRIVKIR-GRSSQCEACGEN 314 (467)
Q Consensus 270 e~ik~l~g~~~~~----~~----~~~~-----~d~~~~~~~~~~~~-~~~~~C~~Cg~~ 314 (467)
|+++.++..+... .. ..+. +-+.-.+|..+.+. .+.+.|.+|++.
T Consensus 554 Ell~~llqhp~~~~ap~~~~~~~~~lG~~Phqirg~l~~f~~~~~~~~~~~~C~aCs~~ 612 (664)
T TIGR01381 554 ELLVSVLQHPLPSKTPASHDDNTTVLGALPHQIRGFLGRFQQILLSVKRFDQCVACSDA 612 (664)
T ss_pred HHHHHHhcCCcccCCCCcCCCCCCccccCCceeeeehhhCeeeeecccCCCcccCCCHH
Confidence 9999998764210 00 1111 11112334444554 478899999975
No 22
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=6.9e-39 Score=303.08 Aligned_cols=193 Identities=27% Similarity=0.324 Sum_probs=171.8
Q ss_pred CCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhC
Q 012280 81 PSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN 160 (467)
Q Consensus 81 ~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~ln 160 (467)
+.||.++|++|++++|+|+|+||+||+++++|+++|+++|+|+|.|.|+.+||+||+++ ++|+|++|+++++++|+++|
T Consensus 16 ~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~ln 94 (212)
T PRK08644 16 SRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEIN 94 (212)
T ss_pred hhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHHHHC
Confidence 33899999999999999999999999999999999999999999999999999999976 67999999999999999999
Q ss_pred CCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHc-CCcEEEEeecCccceEEEEeCCC--CCceeec
Q 012280 161 STVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVL-GKPLVSGAALGLEGQLTVYNYNG--GPCYRCL 237 (467)
Q Consensus 161 p~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~-~~p~i~~~~~g~~G~l~v~~~~~--~~C~~C~ 237 (467)
|++++++++..++.++..++++++|+||+|+|++.+|+.+++.|+++ ++|+|.++..+..|+...+.+.. .+||.|
T Consensus 95 p~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (212)
T PRK08644 95 PFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRRIGKNFYIV- 173 (212)
T ss_pred CCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecCCCCCeeEC-
Confidence 99999999999998888889999999999999999999999999999 99999998888888876555432 344422
Q ss_pred CCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCC
Q 012280 238 FPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGE 280 (467)
Q Consensus 238 ~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~ 280 (467)
+..+ ...|...|++||+++++|+++|.|++|+++|.+.
T Consensus 174 -~~~~----~~~~~~~gv~~~~~~~i~~~~a~ealk~l~~~~~ 211 (212)
T PRK08644 174 -GDFV----TEAKPGNPLMAPRVNIAAAHQANLVLRLILGEEV 211 (212)
T ss_pred -CCCC----cccCCCCCccchHHHHHHHHHHHHHHHHHhCCCC
Confidence 2221 2357889999999999999999999999998643
No 23
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=348.02 Aligned_cols=228 Identities=23% Similarity=0.326 Sum_probs=202.2
Q ss_pred hhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHH
Q 012280 72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKS 151 (467)
Q Consensus 72 ~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~ 151 (467)
.||+||+.+ ||.++|+||++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.||||||++++.+|||++|+++
T Consensus 313 ~ry~Rqi~l--ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaev 390 (989)
T PRK14852 313 IAFSRNLGL--VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDV 390 (989)
T ss_pred HHhhchHhh--cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHH
Confidence 689999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChh--HHHHHHHHHHHcCCcEEEEeecCccceEEEEeCC
Q 012280 152 AAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP--SRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN 229 (467)
Q Consensus 152 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~--~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~~ 229 (467)
++++|+++||+++|++++..++++|..++++++|+||||+|++. .+..+++.|+++++|+|+++..|+.|++.++.|+
T Consensus 391 aa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~ 470 (989)
T PRK14852 391 MTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPG 470 (989)
T ss_pred HHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCC
Confidence 99999999999999999999999999999999999999999864 5667777899999999999999999999998765
Q ss_pred CCCceeecCCCCCCccc-------------------------cc-cccCCCcccchHHHHHHHHHHHHHHHHhcCCCCC-
Q 012280 230 GGPCYRCLFPTPPPTTA-------------------------CQ-RCADSGVLGVVPGIIGCLQALEAIKVASAVGEPL- 282 (467)
Q Consensus 230 ~~~C~~C~~~~~~~~~~-------------------------~~-~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~- 282 (467)
++||+|+|+..+.... +. .-...+.++..+.+.++++|.|++|+++|.++..
T Consensus 471 -~~~~~~~f~~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~ 549 (989)
T PRK14852 471 -GMNFDSYFGIDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRP 549 (989)
T ss_pred -CCCHHHhCCCCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCcccc
Confidence 5999999987543110 00 1123566777888999999999999999997753
Q ss_pred CCceeEeecCCCeEEEEEee
Q 012280 283 SGRMLLFDALSARIRIVKIR 302 (467)
Q Consensus 283 ~~~~~~~d~~~~~~~~~~~~ 302 (467)
.+..+.||++.+.+.+-.++
T Consensus 550 ~p~~~qfd~~~~~~~~~~~~ 569 (989)
T PRK14852 550 VPYFRQFDPLTGRHVRGRLR 569 (989)
T ss_pred Ccchhccchhhcccceeeee
Confidence 36788999999887766654
No 24
>PRK14851 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-38 Score=341.24 Aligned_cols=234 Identities=21% Similarity=0.305 Sum_probs=207.3
Q ss_pred CCHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccC
Q 012280 66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIG 145 (467)
Q Consensus 66 l~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG 145 (467)
....+.+||+||+.+ ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|++||||||++++.+|||
T Consensus 18 ~~~~~~~ry~R~~~l--~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG 95 (679)
T PRK14851 18 AAEYREAAFSRNIGL--FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFG 95 (679)
T ss_pred HHHHHHHHhhhhHHh--cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCC
Confidence 455667999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCCh--hHHHHHHHHHHHcCCcEEEEeecCccceE
Q 012280 146 QSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA--PSRYMISDCCVVLGKPLVSGAALGLEGQL 223 (467)
Q Consensus 146 ~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~--~~r~~i~~~~~~~~~p~i~~~~~g~~G~l 223 (467)
++|+++++++|+++||+++|++++..++++|..++++++|+||||+|++ .+|.+|++.|+++++|+|+++..|+.|++
T Consensus 96 ~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~ 175 (679)
T PRK14851 96 RPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAM 175 (679)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceE
Confidence 9999999999999999999999999999999999999999999999974 67899999999999999999999999999
Q ss_pred EEEeCCCCCceeecCCCCCCcc-------------------------cc-ccccCCCcccchHHHHHHHHHHHHHHHHhc
Q 012280 224 TVYNYNGGPCYRCLFPTPPPTT-------------------------AC-QRCADSGVLGVVPGIIGCLQALEAIKVASA 277 (467)
Q Consensus 224 ~v~~~~~~~C~~C~~~~~~~~~-------------------------~~-~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g 277 (467)
.++.|+ ++||.|+|...+... .+ -+-.++..+...+-..+++.+.|++|++.|
T Consensus 176 ~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (679)
T PRK14851 176 LVFTPQ-GMGFDDYFNIGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILG 254 (679)
T ss_pred EEEcCC-CCCHhHhccCCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhc
Confidence 999876 899999987644310 00 012234566677788999999999999999
Q ss_pred CCCCC-CCceeEeecCCCeEEEEEee
Q 012280 278 VGEPL-SGRMLLFDALSARIRIVKIR 302 (467)
Q Consensus 278 ~~~~~-~~~~~~~d~~~~~~~~~~~~ 302 (467)
.+... .+.++.||++.+.+...++.
T Consensus 255 ~~~~~~~p~~~~~d~~~~~~~~~~~~ 280 (679)
T PRK14851 255 KGGLRPVPCYLQFDPFLQKLRKGRLS 280 (679)
T ss_pred CCeeeccchhhhcchhhcceeEEEee
Confidence 87653 36789999999887766665
No 25
>PRK07877 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=327.28 Aligned_cols=215 Identities=20% Similarity=0.218 Sum_probs=183.8
Q ss_pred CCCHHHH--hhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcC-CeEEEEeCCccCccccccccccCC
Q 012280 65 GLSPDMI--YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTE 141 (467)
Q Consensus 65 ~l~~~~~--~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~Rq~l~~~ 141 (467)
-|+++++ +||+||+.+ ||.++|++|++++|+|||+| +||.+|.+|+++|| |+|+|+|+|.||.|||||| +++.
T Consensus 79 ~~~~~~~~~~r~~Rn~~~--ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~ 154 (722)
T PRK07877 79 LLGPREFRAVRLDRNRNK--ITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGV 154 (722)
T ss_pred cCCHHHhhHHHhhchhhh--CCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCCh
Confidence 4888888 899999999 99999999999999999997 99999999999996 9999999999999999998 5788
Q ss_pred CccCCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccc
Q 012280 142 PYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG 221 (467)
Q Consensus 142 ~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G 221 (467)
.|+|++|+++++++|+++||+++|++++..++++|..++++++|+||||+||+.+|++||++|+++++|+|+++..+ |
T Consensus 155 ~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g 232 (722)
T PRK07877 155 FDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--G 232 (722)
T ss_pred hhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998554 8
Q ss_pred eEE--EEe-CCCCCceeecCCCCCCccc--------cc-----------------cc-------cCCCcccchHHHHHHH
Q 012280 222 QLT--VYN-YNGGPCYRCLFPTPPPTTA--------CQ-----------------RC-------ADSGVLGVVPGIIGCL 266 (467)
Q Consensus 222 ~l~--v~~-~~~~~C~~C~~~~~~~~~~--------~~-----------------~c-------~~~g~~g~~~~v~g~l 266 (467)
++. .+. .+.+|||+|+++..+...- .+ ++ ...+.++.-+.+.|++
T Consensus 233 ~~~~e~~~~~p~~pc~~cl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~s~~~~~~~~~~~pql~~~~~~~~~~ 312 (722)
T PRK07877 233 LLDVERFDLEPDRPILHGLLGDIDAAKLAGLSTKDKVPHVLRILDAEALSARMAASLVEVDQTLSTWPQLASDVVLGAAA 312 (722)
T ss_pred CcCcceeeeCCCCceeeccCCCCChhhhccCChhccCcceeeeccccccCHHHHHHHHhccCccccCCchHHHHHhhHHH
Confidence 774 222 3579999999987542110 00 01 1233566667788888
Q ss_pred HHHHHHHHHhcCCCCCCCce
Q 012280 267 QALEAIKVASAVGEPLSGRM 286 (467)
Q Consensus 267 ~A~e~ik~l~g~~~~~~~~~ 286 (467)
.|..+.|++.|..-+ +|++
T Consensus 313 ~~~~~~~i~l~~~~~-sgr~ 331 (722)
T PRK07877 313 VAEAVRRIGLGEPLE-SGRV 331 (722)
T ss_pred HHHHHHHHHcCCcCC-CCCE
Confidence 888888999877532 3443
No 26
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=100.00 E-value=1.9e-35 Score=286.80 Aligned_cols=212 Identities=25% Similarity=0.340 Sum_probs=178.5
Q ss_pred CCCHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCcc
Q 012280 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI 144 (467)
Q Consensus 65 ~l~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~di 144 (467)
.|+.++.+||+||.+| ||.++|++|++++|+|+|+||+||++|++|+++|||+|+|||+|.|+.+|++||+++..+++
T Consensus 4 ~~~~~~~~rf~R~~~L--~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~v 81 (268)
T PRK15116 4 VISDAWRQRFGGTARL--YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV 81 (268)
T ss_pred CCCHHHHHHHhhHHHH--hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhc
Confidence 5888899999999999 99999999999999999999999999999999999999999999999999999999988999
Q ss_pred CCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcC-CCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCcc---
Q 012280 145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE--- 220 (467)
Q Consensus 145 G~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~-~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~--- 220 (467)
|++|++++++++.++||+++|+++...+++++..+++. +||+||||+|++..+..|+++|+++++|+|+++..|..
T Consensus 82 G~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 82 GLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred ChHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCC
Confidence 99999999999999999999999998888888878774 79999999999999999999999999999987543321
Q ss_pred ceEEEEe-------C-------------CC------CCceeecCCCCCCccc-----------------ccccc-CCCcc
Q 012280 221 GQLTVYN-------Y-------------NG------GPCYRCLFPTPPPTTA-----------------CQRCA-DSGVL 256 (467)
Q Consensus 221 G~l~v~~-------~-------------~~------~~C~~C~~~~~~~~~~-----------------~~~c~-~~g~~ 256 (467)
..+.+-. | +. ..-+.|+|...++... ...|. ..|++
T Consensus 162 ~~~~~~di~~t~~~pla~~~R~~lr~~~~~~~~~~~~~~~~~v~S~E~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~gs~ 241 (268)
T PRK15116 162 TQIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQADGSVCAMKSTAEGPKRMDCASGFGAA 241 (268)
T ss_pred CeEEEEeeecccCChHHHHHHHHHHHhhCCCcccCccCCeEEEeCCCcCCCCCcccccccccccccccccccCCCCCCcc
Confidence 1222211 1 10 0136677765543111 01343 35888
Q ss_pred cchHHHHHHHHHHHHHHHHhcC
Q 012280 257 GVVPGIIGCLQALEAIKVASAV 278 (467)
Q Consensus 257 g~~~~v~g~l~A~e~ik~l~g~ 278 (467)
..+|+++|.++|.++|+.|.+.
T Consensus 242 ~~v~~~~G~~~a~~vi~~l~~~ 263 (268)
T PRK15116 242 TMVTATFGFVAVSHALKKMMAK 263 (268)
T ss_pred eehhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998754
No 27
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=8.8e-36 Score=295.03 Aligned_cols=146 Identities=29% Similarity=0.571 Sum_probs=139.1
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~ 174 (467)
||+|||+||+||+++++|+++|||+|+|+|.|.|+.+||+||++++++|||++|+++++++|+++||+++|+++...++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred c-cHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeCCCCCceeecCCC
Q 012280 175 S-NALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPT 240 (467)
Q Consensus 175 ~-~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~~~~~C~~C~~~~ 240 (467)
. ...++++++|+||+|.|+.++|..+|++|+.+++|+|.+++.|+.|++.++.|+.++||.|....
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~ 147 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKE 147 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCC
Confidence 3 35688999999999999999999999999999999999999999999999999999999998643
No 28
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=3.3e-35 Score=280.75 Aligned_cols=155 Identities=26% Similarity=0.495 Sum_probs=142.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~ 174 (467)
||+|||+||+||+++++|+++|+|+|+|+|.|.|+.|||+||+|++++|+|++|+++++++|+++||+++|+++...+++
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cc--HHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeCCCCCceeecCCCCCCcccccccc
Q 012280 175 SN--ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCA 251 (467)
Q Consensus 175 ~~--~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~~~~~C~~C~~~~~~~~~~~~~c~ 251 (467)
++ ..++++++|+||+|+|+.++|.++|+.|+.+++|+|++++.|+.|++.++.|+.++||+|.+. |+....+.|.
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~--~~~~~~p~Ct 157 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLY--PPQKNFPMCT 157 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCC--CCCCCCCccc
Confidence 33 357889999999999999999999999999999999999999999999999999999999983 2333344454
No 29
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-35 Score=277.59 Aligned_cols=229 Identities=27% Similarity=0.475 Sum_probs=192.0
Q ss_pred CHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCc
Q 012280 84 GVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV 163 (467)
Q Consensus 84 G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v 163 (467)
+.+..+.|.+.+|+|+|+||+||+++++|+.+|++.+++||.|+++.+||||||+|++.|+|++|+++|++.+.+..|..
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHH---cC-------CcEEEEeecCccceEEEEeCCCCCc
Q 012280 164 HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV---LG-------KPLVSGAALGLEGQLTVYNYNGGPC 233 (467)
Q Consensus 164 ~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~---~~-------~p~i~~~~~g~~G~l~v~~~~~~~C 233 (467)
.|..|..++. +...++.++||+||+..|+.++|.+||...++ .| +|+|++++.|+.|++.++.|+.++|
T Consensus 111 ~v~~h~~kIq-d~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaC 189 (422)
T KOG2015|consen 111 VVVPHRQKIQ-DKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITAC 189 (422)
T ss_pred EEeeeecchh-cCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccHH
Confidence 9999998887 34467889999999999999999999987544 23 6999999999999999999999999
Q ss_pred eeecCCCCCCccccccccC-------------------------------------------------------------
Q 012280 234 YRCLFPTPPPTTACQRCAD------------------------------------------------------------- 252 (467)
Q Consensus 234 ~~C~~~~~~~~~~~~~c~~------------------------------------------------------------- 252 (467)
+.|....-|+..+.+.|.-
T Consensus 190 ieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lv 269 (422)
T KOG2015|consen 190 IECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERANEFNITGVTRRLV 269 (422)
T ss_pred HHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhh
Confidence 9998543333222111110
Q ss_pred CCc-------ccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCe-EEEEEeeccCCCCCccCCCC
Q 012280 253 SGV-------LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR-IRIVKIRGRSSQCEACGENS 315 (467)
Q Consensus 253 ~g~-------~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~C~~Cg~~~ 315 (467)
.|+ +...++++++..|.||+|+++....++ ..++.|+...+- .+++.+. |+++|++||-.+
T Consensus 270 tGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~-~Nym~~n~~eG~ytytf~~e-r~~nC~vCS~~~ 338 (422)
T KOG2015|consen 270 TGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPL-DNYMNYNAEEGIYTYTFLLE-RDKNCPVCSNLV 338 (422)
T ss_pred hhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhh-hhheeeecccceeEEEeeec-cCCCCccccCCC
Confidence 121 122345899999999999999988775 457888888876 5556665 999999999644
No 30
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=7.7e-35 Score=267.42 Aligned_cols=171 Identities=29% Similarity=0.373 Sum_probs=155.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~ 174 (467)
||+|+|+||+||+++++|+++|+++|+|+|.|.|+++||+||++. .+|+|++|+++++++|+++||++++++++..++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 699999999999999999999999999999999999999999965 5799999999999999999999999999999998
Q ss_pred ccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHc-CCcEEEEeecCccceEEEEeCCC--CCceeecCCCCCCcccccccc
Q 012280 175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVL-GKPLVSGAALGLEGQLTVYNYNG--GPCYRCLFPTPPPTTACQRCA 251 (467)
Q Consensus 175 ~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~-~~p~i~~~~~g~~G~l~v~~~~~--~~C~~C~~~~~~~~~~~~~c~ 251 (467)
++..++++++|+||+|+|++.+|..+++.|.+. ++|+|+++..++.|++..+.++. .+||+|.- ..+ ..|.
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~ 153 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICGD-LVN-----EAKE 153 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEeec-CCC-----CCCC
Confidence 888899999999999999999999888887776 99999999999999998877654 57999982 111 2377
Q ss_pred CCCcccchHHHHHHHHHHHHH
Q 012280 252 DSGVLGVVPGIIGCLQALEAI 272 (467)
Q Consensus 252 ~~g~~g~~~~v~g~l~A~e~i 272 (467)
..|++||+++++|+++|.|++
T Consensus 154 ~~g~~~~~~~~~~~~~~~e~~ 174 (174)
T cd01487 154 GLGLMAPRVNICAAHQANLVL 174 (174)
T ss_pred CcCccccHHHHHHHHHHHhhC
Confidence 899999999999999999985
No 31
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.1e-35 Score=275.72 Aligned_cols=243 Identities=26% Similarity=0.413 Sum_probs=207.9
Q ss_pred CCCCCCCHHHH--hhcccccccCCCC-HHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCcccccccc
Q 012280 61 AVDYGLSPDMI--YRYSRHLLLPSFG-VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQV 137 (467)
Q Consensus 61 ~~~~~l~~~~~--~ry~Rq~~l~~~G-~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~ 137 (467)
.+.++||.+.. ..|||-|.|.++| ....++++...|+|||.||+||-+|..|.|+|||++.|+|+|.|+..|+||-|
T Consensus 47 ~kieklSsEVVDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF 126 (422)
T KOG2336|consen 47 SKIEKLSSEVVDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF 126 (422)
T ss_pred HHHHHhhhhHhcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc
Confidence 34567888876 5899999999999 58899999999999999999999999999999999999999999999999988
Q ss_pred ccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCc-ccHHhhc-----------CCCeEEEEcCCChhHHHHHHHHHH
Q 012280 138 IHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT-SNALEIL-----------SQYEIVVDATDNAPSRYMISDCCV 205 (467)
Q Consensus 138 l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~-----------~~~DlVi~~~d~~~~r~~i~~~~~ 205 (467)
|.++..|.+|++++...|..+||+|.++.|+..++. +|...|. +..|+|+.|+||+++|..+|.+|.
T Consensus 127 -f~P~QaGlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACN 205 (422)
T KOG2336|consen 127 -FQPDQAGLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACN 205 (422)
T ss_pred -cCcccccchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHH
Confidence 557799999999999999999999999999999986 4443333 458999999999999999999999
Q ss_pred HcCCcEEEEee--cCccceEEEEeCCCCCceeecCCCCCCcc-------ccccccCCCcccchHHHHHHHHHHHHHHHHh
Q 012280 206 VLGKPLVSGAA--LGLEGQLTVYNYNGGPCYRCLFPTPPPTT-------ACQRCADSGVLGVVPGIIGCLQALEAIKVAS 276 (467)
Q Consensus 206 ~~~~p~i~~~~--~g~~G~l~v~~~~~~~C~~C~~~~~~~~~-------~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~ 276 (467)
..+..|+..+. ....|+|..+.|+.++||.|.-|..-... ....|. .+++..-|+++++.++.++|+|+
T Consensus 206 E~~q~WmESGVSEnAVSGHIQ~i~PGetACFACaPPlVVAs~IDErTLKReGVCA--ASLPTTMgvvAG~LVqN~LK~LL 283 (422)
T KOG2336|consen 206 ELNQTWMESGVSENAVSGHIQLIVPGETACFACAPPLVVASGIDERTLKREGVCA--ASLPTTMGVVAGFLVQNSLKFLL 283 (422)
T ss_pred HhhhHHHHccCccccccceeEEecCCccceecccCceeeecCcchhhhhhcceee--ecCcchHHHHHHHHHHHHHHHHh
Confidence 99999987544 46789999999999999999954321100 011232 35777789999999999999999
Q ss_pred cCCCCCCCceeEeecCCCeEEEEEeeccCCCCC
Q 012280 277 AVGEPLSGRMLLFDALSARIRIVKIRGRSSQCE 309 (467)
Q Consensus 277 g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~C~ 309 (467)
..++. ..++.|++++.-|.++.++ ++|.|.
T Consensus 284 NFGeV--S~YlGYNal~DFFP~msmk-PNPqCd 313 (422)
T KOG2336|consen 284 NFGEV--SPYLGYNALSDFFPTMSMK-PNPQCD 313 (422)
T ss_pred hcccc--chhhcchhHHhhCccccCC-CCCCCC
Confidence 98875 3488999999999999998 899985
No 32
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=100.00 E-value=1.2e-34 Score=271.66 Aligned_cols=186 Identities=25% Similarity=0.322 Sum_probs=158.6
Q ss_pred CCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhC
Q 012280 81 PSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN 160 (467)
Q Consensus 81 ~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~ln 160 (467)
..+|.+.|++|++++|+|+|+||+||++|++|+++||++|+|+|.|.|+.+||+||++ ..+++|++|++++++.|+++|
T Consensus 9 ~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~in 87 (200)
T TIGR02354 9 ARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEIN 87 (200)
T ss_pred HhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHHC
Confidence 3479999999999999999999999999999999999999999999999999999974 568999999999999999999
Q ss_pred CCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHH-HcC-CcEEEEeecCccceE--EEEeC--CCCCce
Q 012280 161 STVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV-VLG-KPLVSGAALGLEGQL--TVYNY--NGGPCY 234 (467)
Q Consensus 161 p~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~-~~~-~p~i~~~~~g~~G~l--~v~~~--~~~~C~ 234 (467)
|+++++++...++.++..++++++|+||+|+|++++|..+++.|. ..+ .+++.+ .|+.|+. ..+.+ ...+||
T Consensus 88 p~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~~~~~~~~~~~~ 165 (200)
T TIGR02354 88 PYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANSIKTRKISKHFY 165 (200)
T ss_pred CCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCceEEecccCCCEE
Confidence 999999999999999999999999999999999999988665554 444 455665 3555544 33322 346788
Q ss_pred eecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHH
Q 012280 235 RCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVA 275 (467)
Q Consensus 235 ~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l 275 (467)
.|.. .+ ...|...|+++|+++++|+|||.|++|++
T Consensus 166 ~~~~--~~----~~~~~~~g~~~p~v~~~a~~qa~~~l~~~ 200 (200)
T TIGR02354 166 LCGD--GK----SDAKQGLGLMAPRVQICAAHQANLVLELI 200 (200)
T ss_pred EcCC--CC----CcccCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 8822 22 12688899999999999999999999974
No 33
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=1.4e-33 Score=269.21 Aligned_cols=190 Identities=30% Similarity=0.423 Sum_probs=161.2
Q ss_pred CCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCC
Q 012280 83 FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST 162 (467)
Q Consensus 83 ~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~ 162 (467)
||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+++|++||+++.++++|++|+++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 68999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred cEEEEccccCCcccHHhhcC-CCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCcc---ceEEEEe-------C---
Q 012280 163 VHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE---GQLTVYN-------Y--- 228 (467)
Q Consensus 163 v~v~~~~~~~~~~~~~~~~~-~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~---G~l~v~~-------~--- 228 (467)
++|+++...+++++..+++. ++|+||||+|+...+..|+++|+++++|+|++...|.. .++.+-. |
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~ 160 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISKTSGDPLAR 160 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEeccccCcHHH
Confidence 99999999999888888774 69999999999999999999999999999997655432 2343321 1
Q ss_pred ---------CCCCceeecCCCCCCccc------------------cccccCCCcccchHHHHHHHHHHHHH
Q 012280 229 ---------NGGPCYRCLFPTPPPTTA------------------CQRCADSGVLGVVPGIIGCLQALEAI 272 (467)
Q Consensus 229 ---------~~~~C~~C~~~~~~~~~~------------------~~~c~~~g~~g~~~~v~g~l~A~e~i 272 (467)
+...-..|+|...++... ...|...|+++.+|+++|.++|.++|
T Consensus 161 ~~R~~Lrk~~~~~~~~~v~S~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~vp~~~G~~~a~~vi 231 (231)
T cd00755 161 KVRKRLRKRGIFFGVPVVYSTEPPDPPKADELVCGDEVGADAALQGLRRAGLGSASTVPAVFGLAIASEVI 231 (231)
T ss_pred HHHHHHHHcCCCCCeEEEeCCCCCCCCccccccccccccccccccCCCCCCCCcceechHHHHHHHHHhhC
Confidence 111126788865533211 12345668999999999999999875
No 34
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=100.00 E-value=1e-33 Score=263.03 Aligned_cols=211 Identities=25% Similarity=0.364 Sum_probs=177.7
Q ss_pred CHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCC
Q 012280 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQ 146 (467)
Q Consensus 67 ~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~ 146 (467)
+....+||+|..+| +|.++.++|++++|+|+|+||+||+++..|+|+|+|+|+|||.|.|..+|+|||+.....+||+
T Consensus 6 ~~~~~~rf~~~~~l--~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk 83 (263)
T COG1179 6 SDAYRQRFGGIARL--YGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGK 83 (263)
T ss_pred HHHHHHHhhhHHHH--cChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhccc
Confidence 35566899999999 9999999999999999999999999999999999999999999999999999999888899999
Q ss_pred chhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcC-CCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCcc---ce
Q 012280 147 SKVKSAAATCRSINSTVHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE---GQ 222 (467)
Q Consensus 147 ~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~-~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~---G~ 222 (467)
+|+++++++++.+||+++|.+++..++++|..+++. +||+||||.|+..++..|-.+|+++++|+|+....|.. -+
T Consensus 84 ~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTr 163 (263)
T COG1179 84 PKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTR 163 (263)
T ss_pred HHHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCce
Confidence 999999999999999999999999999999999885 59999999999999999999999999999986533221 12
Q ss_pred EEEEe---------------------CCCCCceeecCCCCCC--cc-c--------------cccccC-CCcccchHHHH
Q 012280 223 LTVYN---------------------YNGGPCYRCLFPTPPP--TT-A--------------CQRCAD-SGVLGVVPGII 263 (467)
Q Consensus 223 l~v~~---------------------~~~~~C~~C~~~~~~~--~~-~--------------~~~c~~-~g~~g~~~~v~ 263 (467)
+.+-. |+..--..|+|...++ +. . ...|.. .|++++|++++
T Consensus 164 i~v~DiskT~~DPLa~~vR~~LRk~~~~~~~gi~vVfS~E~~~~P~~d~~~~~~~~~~~~~~~~~c~~~~gs~~~Vta~f 243 (263)
T COG1179 164 IQVADISKTIQDPLAAKVRRKLRKRFPKIKFGVPVVFSTENPVYPQADGSVCAIDATAESAKRLDCARGLGSATFVTAVF 243 (263)
T ss_pred EEeeechhhccCcHHHHHHHHHHHhccCCccCCceEecCCCCCCCcccccccccchhhccchhhhhhcCCCcccccchHH
Confidence 33311 1222235677764433 11 0 013655 78999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 012280 264 GCLQALEAIKVASAVG 279 (467)
Q Consensus 264 g~l~A~e~ik~l~g~~ 279 (467)
|..+|.++++-+....
T Consensus 244 Gl~~as~vv~~i~~~~ 259 (263)
T COG1179 244 GLVAASEVVKKILDKK 259 (263)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887653
No 35
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=5.3e-34 Score=319.36 Aligned_cols=177 Identities=27% Similarity=0.449 Sum_probs=164.2
Q ss_pred HhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcC-----CeEEEEeCCccCccccccccccCCCccC
Q 012280 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHRQVIHTEPYIG 145 (467)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~V~~sNl~Rq~l~~~~diG 145 (467)
.+||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|+|.|+.|||+||+|++++|||
T Consensus 399 ~~RYdrqi~l--~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIG 476 (1008)
T TIGR01408 399 GDRYDAQIAV--FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIG 476 (1008)
T ss_pred hhhhHHHHHH--cCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcC
Confidence 4899999999 99999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred CchhHHHHHHHHhhCCCcEEEEccccCCccc--H--HhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccc
Q 012280 146 QSKVKSAAATCRSINSTVHIIEHREALRTSN--A--LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG 221 (467)
Q Consensus 146 ~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~--~--~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G 221 (467)
++|+++|+++++++||+++|+++...+.+++ . .++++++|+||+|+|+..+|.++++.|+.+++|+|.+++.|+.|
T Consensus 477 k~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G 556 (1008)
T TIGR01408 477 KPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKG 556 (1008)
T ss_pred cHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCcee
Confidence 9999999999999999999999999987643 2 46789999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCCceeecCCCCCCcccccccc
Q 012280 222 QLTVYNYNGGPCYRCLFPTPPPTTACQRCA 251 (467)
Q Consensus 222 ~l~v~~~~~~~C~~C~~~~~~~~~~~~~c~ 251 (467)
++.++.|+.+.||.|.. . |+....+.|.
T Consensus 557 ~v~v~ip~~te~y~~~~-d-~~~~~~P~Ct 584 (1008)
T TIGR01408 557 NTQVVVPHLTESYGSSR-D-PPEKEIPFCT 584 (1008)
T ss_pred eEEEEeCCCcCCCCCCC-C-CCCCCCCccc
Confidence 99999999999999984 3 3334555664
No 36
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=2.5e-33 Score=313.97 Aligned_cols=150 Identities=24% Similarity=0.367 Sum_probs=144.0
Q ss_pred HHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchh
Q 012280 70 MIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKV 149 (467)
Q Consensus 70 ~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~ 149 (467)
+.+||+||+++ ||.++|++|++++|+|+|+||||+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|||++|+
T Consensus 3 d~~lYsRQi~l--~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Ka 80 (1008)
T TIGR01408 3 DEALYSRQLYV--LGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRA 80 (1008)
T ss_pred hHhhhhhHHHh--cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHH
Confidence 45899999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcC--CcEEEEeecCccceEEE
Q 012280 150 KSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLG--KPLVSGAALGLEGQLTV 225 (467)
Q Consensus 150 ~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~--~p~i~~~~~g~~G~l~v 225 (467)
++++++|+++||+|+|+++...++. +++++||+||+|.++...++.||++|+.++ +|+|++++.|+.|+++.
T Consensus 81 ea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~ 154 (1008)
T TIGR01408 81 EAVVKKLAELNPYVHVSSSSVPFNE----EFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFC 154 (1008)
T ss_pred HHHHHHHHHHCCCceEEEecccCCH----HHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEe
Confidence 9999999999999999999988863 588999999999999999999999999999 89999999999998865
No 37
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=100.00 E-value=1.2e-32 Score=267.91 Aligned_cols=216 Identities=23% Similarity=0.290 Sum_probs=165.9
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCc--cCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY--IGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~d--iG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
||+|+|+|||||++|++|+++|||+|+|+|+|.|+.+||+||+|+..+| +|++|+++++++|+++||+++++.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999887554
Q ss_pred -----------------CcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeC-C-----
Q 012280 173 -----------------RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-N----- 229 (467)
Q Consensus 173 -----------------~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~-~----- 229 (467)
+.++..++++++|+||+|+|+.++|++++.+|...++|+|+ .+.|+.|++.+.+. +
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmrhg~~~~~~~ 159 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMRHGAGPQSQS 159 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEEeCCCccccc
Confidence 34567789999999999999999999999999999999998 58899999988652 1
Q ss_pred -------------CCCceeecCCCCCCcccc-----ccccCCCcccchHHHHHHHHHHHHHHHHhcCCC----C-CC--C
Q 012280 230 -------------GGPCYRCLFPTPPPTTAC-----QRCADSGVLGVVPGIIGCLQALEAIKVASAVGE----P-LS--G 284 (467)
Q Consensus 230 -------------~~~C~~C~~~~~~~~~~~-----~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~----~-~~--~ 284 (467)
..+||.|-.-..|..... +.|. |.-|-.+.+++-.|.|-+--++..+. | .. .
T Consensus 160 ~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqct---vtrpG~a~ias~~avEl~~s~lqhp~~~~a~~~~~~~ 236 (307)
T cd01486 160 GSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCT---VTRPGLSMIASSIAVELLVSLLQHPLGGHAPAESSSN 236 (307)
T ss_pred ccccccccccCCCCcceeeeCCEecCCCCCCCcccCcccc---eecCchHHHHHHHHHHHHHHHHcCCCccCCCCccccc
Confidence 467999986554432211 2232 34455555666666777666655431 1 00 0
Q ss_pred ------ceeE-----eecCCCeEEEEEee-ccCCCCCccCCC
Q 012280 285 ------RMLL-----FDALSARIRIVKIR-GRSSQCEACGEN 314 (467)
Q Consensus 285 ------~~~~-----~d~~~~~~~~~~~~-~~~~~C~~Cg~~ 314 (467)
..+. +-+.-.+|..+.+. ++.+.|.+|++.
T Consensus 237 ~~~~~~~~lg~~Phqirg~l~~~~~~~~~~~~~~~C~aCs~~ 278 (307)
T cd01486 237 EGDEPTTVLGILPHQIRGFLSNFSNLTLSGQAYDQCTACSDA 278 (307)
T ss_pred cCCCCCCcCccCCeeeeeehhhCeeeeecccCCCccccCCHH
Confidence 0111 11112334445554 478889999875
No 38
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-33 Score=277.83 Aligned_cols=152 Identities=30% Similarity=0.567 Sum_probs=146.7
Q ss_pred HHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEE
Q 012280 86 EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI 165 (467)
Q Consensus 86 ~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v 165 (467)
+-++.++++|||||||||+||+++++|++.|+++|+|||-|+|+.|||||||||+..+||++||.+|++..+++||++++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccCCcc-cHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeCCCCCceeec
Q 012280 166 IEHREALRTS-NALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCL 237 (467)
Q Consensus 166 ~~~~~~~~~~-~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~~~~~C~~C~ 237 (467)
.+|...+.+. ...+++++||+|+.|.||.++|..+|+.|.....|+|.+++.|+.||++++.+|.+-||.|.
T Consensus 85 ~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~ 157 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECI 157 (603)
T ss_pred EeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceeccc
Confidence 9999998764 67889999999999999999999999999999999999999999999999999999999998
No 39
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.98 E-value=7.6e-32 Score=277.76 Aligned_cols=204 Identities=20% Similarity=0.265 Sum_probs=171.0
Q ss_pred hhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHH
Q 012280 72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKS 151 (467)
Q Consensus 72 ~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~ 151 (467)
+|||||++| ||.+||++|.+++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+|||++..+|+|++||++
T Consensus 1 ~rYDRQlrL--wG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~ 78 (425)
T cd01493 1 QKYDRQLRL--WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEA 78 (425)
T ss_pred CcchHHHHH--hHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHH
Confidence 489999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEccccCCc--ccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeCC
Q 012280 152 AAATCRSINSTVHIIEHREALRT--SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN 229 (467)
Q Consensus 152 ~~~~l~~lnp~v~v~~~~~~~~~--~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~~ 229 (467)
+++.|+++||+++++.+...++. ++..++++++|+||+|.++...+..|+++|++.++|+|.+++.|+.|++.+..+
T Consensus 79 ~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~- 157 (425)
T cd01493 79 TCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLK- 157 (425)
T ss_pred HHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEEC-
Confidence 99999999999999998877653 345688999999999999998888999999999999999999999999988765
Q ss_pred CCCceeecC---------CCCCCccc--c----ccccCCCcccchHHHHHHHHHHHHHHHHhcC
Q 012280 230 GGPCYRCLF---------PTPPPTTA--C----QRCADSGVLGVVPGIIGCLQALEAIKVASAV 278 (467)
Q Consensus 230 ~~~C~~C~~---------~~~~~~~~--~----~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~ 278 (467)
...+..+.- ..|.|... . ..-.+.-.++++|.++-.+.+++.+|.-.+.
T Consensus 158 ~h~i~et~p~~~~~DLRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g 221 (425)
T cd01493 158 EHTIVESHPDNALEDLRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNG 221 (425)
T ss_pred CeEEEECCCCCCCcCcccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCC
Confidence 222322210 01111000 0 0111233578999999999999988877653
No 40
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.97 E-value=8.6e-32 Score=276.05 Aligned_cols=156 Identities=26% Similarity=0.441 Sum_probs=144.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcC-----CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 95 SILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
||+|||+||+||+++++|+++|| |+|+|+|.|.||.|||+||+|+++.|||++|++++++.++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccH----HhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeCCCCCceeecCCCCCCcc
Q 012280 170 EALRTSNA----LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTT 245 (467)
Q Consensus 170 ~~~~~~~~----~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~~~~~C~~C~~~~~~~~~ 245 (467)
..+.+++. .++++++|+||+|.|++++|..+++.|+..++|+|.+++.|+.|++.++.|+.+.||+|... |+..
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~--p~~~ 158 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRD--PPEK 158 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCC--CCCC
Confidence 98876443 47789999999999999999999999999999999999999999999999999999999843 3445
Q ss_pred ccccccC
Q 012280 246 ACQRCAD 252 (467)
Q Consensus 246 ~~~~c~~ 252 (467)
..+.|.-
T Consensus 159 ~~P~Ctl 165 (435)
T cd01490 159 SIPLCTL 165 (435)
T ss_pred CCCCccc
Confidence 5666753
No 41
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.97 E-value=4.7e-31 Score=232.72 Aligned_cols=134 Identities=34% Similarity=0.607 Sum_probs=126.0
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
|++||+|+|+|++||+++++|+++|+++|+|+|+|.|+++|++||+++..+|+|++|+++++++|+++||++++++++..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEE
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTV 225 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v 225 (467)
++.++..++++++|+||+|+|+.+.+.+++++|+++++|+|+++..|+.|++..
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 988888999999999999999999999999999999999999999999999853
No 42
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.3e-31 Score=249.21 Aligned_cols=159 Identities=26% Similarity=0.459 Sum_probs=150.0
Q ss_pred CCCCHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCc
Q 012280 64 YGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY 143 (467)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~d 143 (467)
+.|+++|+..|+|||+| ||.+.|++|+++||+|+|.+|+|.+++++|+++|||+++++|+-.|.+.+++-|||...++
T Consensus 4 ~else~E~alYDRQIRL--WG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~ 81 (331)
T KOG2014|consen 4 EELSEQEIALYDRQIRL--WGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASS 81 (331)
T ss_pred hhhhHHHHHHHHHHHHH--ccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhh
Confidence 46999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceE
Q 012280 144 IGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQL 223 (467)
Q Consensus 144 iG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l 223 (467)
+|+.|+++..++++.+||.|+|......+.. ...++|.+||+||-.--+.+.+.-+|..|++++++|+.++..|+.|+.
T Consensus 82 vg~~raeas~erl~~LNPmV~v~~d~edl~e-k~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~ 160 (331)
T KOG2014|consen 82 VGQTRAEASLERLQDLNPMVDVSVDKEDLSE-KDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYA 160 (331)
T ss_pred hchHHHHHHHHHHHhcCCceEEEechhhhhh-cchhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeee
Confidence 9999999999999999999999999888874 447899999999977677788888999999999999999999999987
Q ss_pred EE
Q 012280 224 TV 225 (467)
Q Consensus 224 ~v 225 (467)
+.
T Consensus 161 F~ 162 (331)
T KOG2014|consen 161 FA 162 (331)
T ss_pred ee
Confidence 55
No 43
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.96 E-value=2.2e-29 Score=224.23 Aligned_cols=133 Identities=35% Similarity=0.617 Sum_probs=128.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~ 174 (467)
+|+|+|+||+||+++++|+++|+++|+|+|+|.|+++|++||++++.+++|++|+++++++++++||+++++.++..++.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999989999999999999999999999999999999887
Q ss_pred ccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEe
Q 012280 175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN 227 (467)
Q Consensus 175 ~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~ 227 (467)
.+..++++++|+||+|+|+.+.+..++++|+++++|+|+++..|+.|+++++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 77788899999999999999999999999999999999999999999998765
No 44
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.96 E-value=8.1e-29 Score=237.08 Aligned_cols=206 Identities=20% Similarity=0.185 Sum_probs=165.6
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcC-----C-----eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGV-----G-----RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN 160 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gv-----g-----~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~ln 160 (467)
-+..+|+|||+||+||+++++|+++|+ | +|+|+|+|.|+.+||+||+ +.+.|||++|+++++++++.++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc
Confidence 467899999999999999999999973 4 9999999999999999995 5678999999999999999988
Q ss_pred CCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHH--c-CCcEEEEeecCccceEEEE-----------
Q 012280 161 STVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV--L-GKPLVSGAALGLEGQLTVY----------- 226 (467)
Q Consensus 161 p~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~--~-~~p~i~~~~~g~~G~l~v~----------- 226 (467)
+++|++++..++++ .++.++|+||+|+||.++|..|++.|++ . .+||+.++..+..||+.+-
T Consensus 88 -~~~i~a~~~~~~~~---~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~~ 163 (244)
T TIGR03736 88 -GTDWTAHPERVERS---STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGENR 163 (244)
T ss_pred -CceEEEEEeeeCch---hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCCc
Confidence 89999999888763 3456899999999999999999999988 2 4899999987777776543
Q ss_pred --eCCCCCceeecCCCCC-CccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCC--CCCCceeEeecCCCeEEEEEe
Q 012280 227 --NYNGGPCYRCLFPTPP-PTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGE--PLSGRMLLFDALSARIRIVKI 301 (467)
Q Consensus 227 --~~~~~~C~~C~~~~~~-~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~--~~~~~~~~~d~~~~~~~~~~~ 301 (467)
.|..+-||.|.....+ +..+.++|+..-++.+-.-++-.++|+.+..+|..... .+..+..+||+.+++.+.+++
T Consensus 164 ~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf~~g~~~~~g~~~nl~~~~~~p~~v 243 (244)
T TIGR03736 164 LRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLFRKGRLEFHGVFVNLATGRTNPLPV 243 (244)
T ss_pred eecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCceeeeEEEEECCCCccccccC
Confidence 3455667777654322 45577899998888887767777777777776654422 245678888998887765543
No 45
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.96 E-value=4.6e-29 Score=234.20 Aligned_cols=118 Identities=20% Similarity=0.301 Sum_probs=110.5
Q ss_pred CCHHHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccC
Q 012280 66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIG 145 (467)
Q Consensus 66 l~~~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG 145 (467)
|+.+|.+||+||+++ ||.++|+||++++|+|+|+||+|+++++||+++|||+|+|+|+|.|+.+||+||+++++ ++|
T Consensus 1 ms~~E~~RYsRQIrL--wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvG 77 (287)
T PTZ00245 1 MRDAEAVRYDRQIRL--WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAG 77 (287)
T ss_pred CCHHHHHHHhHHHHH--hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccC
Confidence 577899999999999 99999999999999999999999999999999999999999999999999999999997 789
Q ss_pred CchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCC
Q 012280 146 QSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATD 192 (467)
Q Consensus 146 ~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d 192 (467)
++|+++++++|+++||+++|++++..++.. ++|++||.+.-
T Consensus 78 k~KAeaAa~~L~eLNP~V~V~~i~~rld~~------n~fqvvV~~~~ 118 (287)
T PTZ00245 78 GTRGARALGALQRLNPHVSVYDAVTKLDGS------SGTRVTMAAVI 118 (287)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEcccccCCc------CCceEEEEEcc
Confidence 999999999999999999999999888764 47888885543
No 46
>PRK06153 hypothetical protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=230.86 Aligned_cols=149 Identities=25% Similarity=0.279 Sum_probs=128.6
Q ss_pred HHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCcccccccc-ccCCCccCC--chhHHHHHHHHhhCCC
Q 012280 86 EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQV-IHTEPYIGQ--SKVKSAAATCRSINST 162 (467)
Q Consensus 86 ~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~-l~~~~diG~--~K~~~~~~~l~~lnp~ 162 (467)
..|++|++++|+||||||+||.++.+|+++||++|+|||+|.|+.+||+||+ +++.+|+|+ +||+++++++.++|+
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~- 247 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR- 247 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-
Confidence 5699999999999999999999999999999999999999999999999998 567889999 999999999999998
Q ss_pred cEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeCCCCCceeecCCCCC
Q 012280 163 VHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPP 242 (467)
Q Consensus 163 v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~~~~~C~~C~~~~~~ 242 (467)
.|.++...+++++.. .+.++|+||+|+|+.++|.+|+++|..+++|||+++.. +.+.+-..+.|.||.+..|.
T Consensus 248 -~I~~~~~~I~~~n~~-~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~-----l~~~~g~l~G~~Rvt~~~p~ 320 (393)
T PRK06153 248 -GIVPHPEYIDEDNVD-ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG-----LELSNGSLGGILRVTLSTPD 320 (393)
T ss_pred -eEEEEeecCCHHHHH-HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec-----ceecCCCcCcEEEEEEecCC
Confidence 467788888877654 67899999999999999999999999999999998643 11111112458888876553
No 47
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.4e-26 Score=216.73 Aligned_cols=222 Identities=27% Similarity=0.388 Sum_probs=174.8
Q ss_pred hhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHH
Q 012280 72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKS 151 (467)
Q Consensus 72 ~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~ 151 (467)
+...|+..+ ||.++|+||+++=|+||||||+||+++.+|+|+|+++|.|||+|.|+.|.||||....-.|||.||+..
T Consensus 55 eqLarN~aF--fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~c 132 (430)
T KOG2018|consen 55 EQLARNYAF--FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMC 132 (430)
T ss_pred HHHHhHHhh--hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHH
Confidence 455677777 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEccccCCcccHHhhc-CCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEe---
Q 012280 152 AAATCRSINSTVHIIEHREALRTSNALEIL-SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN--- 227 (467)
Q Consensus 152 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~-~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~--- 227 (467)
++++++++.|+++|++.+.-++.++..+++ .+.|+|+||.||..++.-|-++|+.+++++|++-..+....-+-++
T Consensus 133 lkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~D 212 (430)
T KOG2018|consen 133 LKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVAD 212 (430)
T ss_pred HHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhh
Confidence 999999999999999999999999998877 4599999999999999999999999999999864433322111111
Q ss_pred ---CCCCCceeec----------------CCC-CCCccc-----ccc------------------ccCCCcccchHHHHH
Q 012280 228 ---YNGGPCYRCL----------------FPT-PPPTTA-----CQR------------------CADSGVLGVVPGIIG 264 (467)
Q Consensus 228 ---~~~~~C~~C~----------------~~~-~~~~~~-----~~~------------------c~~~g~~g~~~~v~g 264 (467)
....|--||. |.. .|.+.. ... -.-.+++|++|+++|
T Consensus 213 is~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ekpdprka~lLp~~d~e~erg~~delsav~dfrvRilPvlGtmP~iFG 292 (430)
T KOG2018|consen 213 ISETEEDPLSRSVRRRLRKRGIEGGIPVVFSLEKPDPRKAKLLPLEDEEGERGNVDELSAVPDFRVRILPVLGTMPGIFG 292 (430)
T ss_pred ccccccCcHHHHHHHHHHHhccccCCceEEecCCCCccccccCCCCccccccCChhhhhhccchhhhhcccccCcchHHH
Confidence 1223333333 211 111000 000 112478999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCC--CceeEeecCCCe
Q 012280 265 CLQALEAIKVASAVG-EPLS--GRMLLFDALSAR 295 (467)
Q Consensus 265 ~l~A~e~ik~l~g~~-~~~~--~~~~~~d~~~~~ 295 (467)
..+|.-++--+++++ +|.. +|+-.||..-.+
T Consensus 293 ltiat~vlt~ia~~pmepi~~~nrlk~Yd~i~q~ 326 (430)
T KOG2018|consen 293 LTIATYVLTQIAQYPMEPIENKNRLKHYDLIHQR 326 (430)
T ss_pred HHHHHHHHHHHhcCCCCcccccchhHHHHHHHHH
Confidence 999999999988774 3322 456666665443
No 48
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.4e-26 Score=238.70 Aligned_cols=183 Identities=27% Similarity=0.455 Sum_probs=161.9
Q ss_pred CCCHHHH----hhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcC-----CeEEEEeCCccCcccccc
Q 012280 65 GLSPDMI----YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHR 135 (467)
Q Consensus 65 ~l~~~~~----~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~V~~sNl~R 135 (467)
+++.++- .||+-|+.+ ||..-|+||.+.++++||+|++||+++||++.+|+ |+|++.|.|.+|.|||||
T Consensus 400 ~~~e~d~~prgsRYD~qiav--fG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnR 477 (1013)
T KOG2012|consen 400 PPSEEDCQPRGSRYDGQIAV--FGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNR 477 (1013)
T ss_pred CCCHHHcccccCccccchhh--hchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccc
Confidence 4455554 499999999 99999999999999999999999999999999999 479999999999999999
Q ss_pred ccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCccc----HHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcE
Q 012280 136 QVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSN----ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPL 211 (467)
Q Consensus 136 q~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~----~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~ 211 (467)
||||+..|||++|++.|++..+.+||+++|.++..++-++. ..+++.+.|+|..+.||+.+|..+..-|+-+.+|+
T Consensus 478 QFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPL 557 (1013)
T KOG2012|consen 478 QFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPL 557 (1013)
T ss_pred eeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccch
Confidence 99999999999999999999999999999999998886533 35788999999999999999999999999999999
Q ss_pred EEEeecCccceEEEEeCCCCCceeecCCCCCCcccccccc
Q 012280 212 VSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCA 251 (467)
Q Consensus 212 i~~~~~g~~G~l~v~~~~~~~C~~C~~~~~~~~~~~~~c~ 251 (467)
+.++++|+.|...++.|.-+--|.- ...||..+.+-|.
T Consensus 558 LESGTlGTKGntQVvvPhlTEsY~S--S~DPPEksiP~CT 595 (1013)
T KOG2012|consen 558 LESGTLGTKGNTQVVVPHLTESYGS--SRDPPEKSIPVCT 595 (1013)
T ss_pred hhccCcCCccceeEEeccccccccc--cCCCcccCCceee
Confidence 9999999999999998866655532 2344555555554
No 49
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.7e-25 Score=232.23 Aligned_cols=148 Identities=26% Similarity=0.399 Sum_probs=140.3
Q ss_pred HhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhH
Q 012280 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK 150 (467)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~ 150 (467)
...||||+++ +|.+..++|..++|+|.|++|||.+|||||+++||+++||.|...+..++|..||+.+++|||+++++
T Consensus 17 E~LYSRQLYV--lG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~ 94 (1013)
T KOG2012|consen 17 ESLYSRQLYV--LGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAE 94 (1013)
T ss_pred hhhhhhhhhh--ccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHH
Confidence 3789999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEE
Q 012280 151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 224 (467)
Q Consensus 151 ~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~ 224 (467)
+...+|.++|+.|.|.++...++ .+++++|++||.+--+.+....|+++|+++++.+|.+.+-|+.|+++
T Consensus 95 as~~~LaeLN~yV~V~v~t~~~~----~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lF 164 (1013)
T KOG2012|consen 95 ASVEKLAELNNYVPVVVLTGPLT----EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLF 164 (1013)
T ss_pred HHHHHHHHhhcceeeEEecCccc----HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhh
Confidence 99999999999999999998887 57899999999777777788889999999999999999999988874
No 50
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.92 E-value=2.7e-24 Score=224.63 Aligned_cols=230 Identities=15% Similarity=0.237 Sum_probs=179.3
Q ss_pred CCCCHHHHhhccccccc-CC---CCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCcccccccccc
Q 012280 64 YGLSPDMIYRYSRHLLL-PS---FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIH 139 (467)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l-~~---~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~ 139 (467)
..|+..+.+||..|+.+ .. .|....++.+++||+|+|.|++|+.++..|+++|+++|..||.|.+ ++|++|
T Consensus 96 ~~L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR---- 170 (637)
T TIGR03693 96 HELESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR---- 170 (637)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH----
Confidence 35999999999999965 22 2445566779999999999999999999999999999999999999 999999
Q ss_pred CCCccCCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChh--HHHHHHHHHHHcCCcEEEE---
Q 012280 140 TEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP--SRYMISDCCVVLGKPLVSG--- 214 (467)
Q Consensus 140 ~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~--~r~~i~~~~~~~~~p~i~~--- 214 (467)
||+. ++.+++ .||++.|+.++. -..+...+.++++|+||..+|++. .-.++|+.|++.|+|||-+
T Consensus 171 ----IgEl-~e~A~~----~n~~v~v~~i~~-~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~ 240 (637)
T TIGR03693 171 ----IHEL-AEIAEE----TDDALLVQEIDF-AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICL 240 (637)
T ss_pred ----HHHH-HHHHHH----hCCCCceEeccC-CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEc
Confidence 7766 666655 999999999876 335677889999999999999765 4557999999999666654
Q ss_pred eecCccceEEEEeCCCCCceeecCCCCCCccccccccCCCcccch-HHHHHHHHHHHHHHHHhcCCCC-CCCceeEeecC
Q 012280 215 AALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVV-PGIIGCLQALEAIKVASAVGEP-LSGRMLLFDAL 292 (467)
Q Consensus 215 ~~~g~~G~l~v~~~~~~~C~~C~~~~~~~~~~~~~c~~~g~~g~~-~~v~g~l~A~e~ik~l~g~~~~-~~~~~~~~d~~ 292 (467)
+..++.|.+ +.|+.++||.|.|............ ....++|. .++++.+++.|++|++++..+. ..++++.+|..
T Consensus 241 G~~~liGPl--ftPgkTGCWeCa~~RL~e~~L~~~~-~s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDle 317 (637)
T TIGR03693 241 KQVGLAGPV--FQQHGDECFEAAWHRLHESALHEEN-SLAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLA 317 (637)
T ss_pred ccceeecce--ECCCCCcHHHHHHHHHHHHhcCCCC-cccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEcc
Confidence 555555544 4489999999976211000000011 22344454 7899999999999999986443 55789999999
Q ss_pred CCeEEEEEeeccCCCCCccCC
Q 012280 293 SARIRIVKIRGRSSQCEACGE 313 (467)
Q Consensus 293 ~~~~~~~~~~~~~~~C~~Cg~ 313 (467)
+.....+++. |+|.|+ |..
T Consensus 318 TLE~~WH~vv-krPqC~-~~~ 336 (637)
T TIGR03693 318 TLEGGWHAFI-KHPDAS-CEK 336 (637)
T ss_pred ccccccccCC-CCCCCC-CCC
Confidence 9988888887 899999 763
No 51
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.1e-23 Score=204.37 Aligned_cols=206 Identities=23% Similarity=0.301 Sum_probs=165.0
Q ss_pred HHHhhcccccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCch
Q 012280 69 DMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSK 148 (467)
Q Consensus 69 ~~~~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K 148 (467)
+...||+||++| ||..||..|..++|+++|||++||+++++|+..|||.|++||+..|+.+++..+|+...+++|++|
T Consensus 5 ~~~~kYDRQlRl--wge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~Gksr 82 (523)
T KOG2016|consen 5 EPKTKYDRQLRL--WGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSR 82 (523)
T ss_pred chhhHHHHHHHH--HHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhH
Confidence 456899999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCcEEEEccccCC--cccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEE
Q 012280 149 VKSAAATCRSINSTVHIIEHREALR--TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVY 226 (467)
Q Consensus 149 ~~~~~~~l~~lnp~v~v~~~~~~~~--~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~ 226 (467)
|++..+.|+++||+|.-.......+ -.+...+|.+|++|+.+--+..+...+.++|+..++|++.+..+|+.|.+++.
T Consensus 83 A~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ 162 (523)
T KOG2016|consen 83 AEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRIS 162 (523)
T ss_pred HHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEE
Confidence 9999999999999987655544432 25567889999999977666667777999999999999999999999999876
Q ss_pred eC--------CCCCceeecCCCCCCccc--c----ccccCCCcccchHHHHHHHHHHHHHHHHh
Q 012280 227 NY--------NGGPCYRCLFPTPPPTTA--C----QRCADSGVLGVVPGIIGCLQALEAIKVAS 276 (467)
Q Consensus 227 ~~--------~~~~C~~C~~~~~~~~~~--~----~~c~~~g~~g~~~~v~g~l~A~e~ik~l~ 276 (467)
.. ++.+-+.-...+|.|... + -+-.+...+..+|.++-.+-+++.+.--.
T Consensus 163 ikEH~iieshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~ 226 (523)
T KOG2016|consen 163 IKEHTIIESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQH 226 (523)
T ss_pred eeeccccccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhh
Confidence 52 333333333333333111 0 12233455677888877776666655443
No 52
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.87 E-value=6.2e-22 Score=171.46 Aligned_cols=120 Identities=52% Similarity=0.910 Sum_probs=100.8
Q ss_pred ccCCCCCccCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEE
Q 012280 343 NLLSADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLY 422 (467)
Q Consensus 343 ~~l~~~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Iv 422 (467)
.++++..+|+++++.+++.++++.+|||||++.+|..+|||||+|||+..+.++...+....... ...+++++||
T Consensus 2 ~~~~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~~~~~~~~~-----~~~~~~~~iv 76 (122)
T cd01526 2 KLLSPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAELKSLQELP-----LDNDKDSPIY 76 (122)
T ss_pred CCCCcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhhhhhhhhcc-----cccCCCCcEE
Confidence 56788899999999999877567889999999999999999999999998776544433210000 0113468999
Q ss_pred EEcCCChhHHHHHHHHHHcCC-CCeEEccccHHHHhhCcCCCCCCC
Q 012280 423 VVCRRGNDSQRAVQALHKLGF-TSARDIIGGLESWANDVDPSFPVY 467 (467)
Q Consensus 423 vvCr~G~~S~~A~~~L~~~G~-~~v~~l~GGl~aW~~~~dp~fP~y 467 (467)
+||++|++|..+++.|+..|| ++++.+.||+.+|..++++.+|.|
T Consensus 77 v~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~~~~~ 122 (122)
T cd01526 77 VVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFPLY 122 (122)
T ss_pred EECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCccCCCC
Confidence 999999999999999999999 799999999999999999999998
No 53
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.82 E-value=3.1e-20 Score=157.44 Aligned_cols=101 Identities=20% Similarity=0.363 Sum_probs=85.7
Q ss_pred CCCccCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcC
Q 012280 347 ADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCR 426 (467)
Q Consensus 347 ~~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr 426 (467)
....|+++++.+++..+++.+|||||++.+|..+|||||+|||+.++..++.++.. +++++|||||+
T Consensus 8 ~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~~-------------~~~~~ivv~C~ 74 (109)
T cd01533 8 HTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELAP-------------DPRTPIVVNCA 74 (109)
T ss_pred cCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcCC-------------CCCCeEEEECC
Confidence 34679999999998776567899999999999999999999999887654333221 22579999999
Q ss_pred CChhHHHHHHHHHHcCCCC-eEEccccHHHHhhCc
Q 012280 427 RGNDSQRAVQALHKLGFTS-ARDIIGGLESWANDV 460 (467)
Q Consensus 427 ~G~~S~~A~~~L~~~G~~~-v~~l~GGl~aW~~~~ 460 (467)
+|.+|..|++.|+..||++ ++++.||+.+|...+
T Consensus 75 ~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 75 GRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 9999999999999999988 999999999998753
No 54
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.82 E-value=6.4e-20 Score=185.24 Aligned_cols=223 Identities=21% Similarity=0.259 Sum_probs=162.3
Q ss_pred HHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCcc---CCchhHHHHHHHHhhCCCcE
Q 012280 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI---GQSKVKSAAATCRSINSTVH 164 (467)
Q Consensus 88 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~di---G~~K~~~~~~~l~~lnp~v~ 164 (467)
-.++++.|+++.|+|.+||.||++|...||+|||+||+.+|..||-.||.|++-+|. |++||+.|+++|++++|.++
T Consensus 335 Ld~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~ 414 (669)
T KOG2337|consen 335 LDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSME 414 (669)
T ss_pred hhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCcccc
Confidence 468999999999999999999999999999999999999999999999999988776 49999999999999999987
Q ss_pred EEEccccC-------Cc----------ccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEe
Q 012280 165 IIEHREAL-------RT----------SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN 227 (467)
Q Consensus 165 v~~~~~~~-------~~----------~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~ 227 (467)
-..|...+ .. +...+++++.|+|+..+|+.+.|++=.-.|...++-+|++ ++|+..++..-+
T Consensus 415 atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINa-ALGFDsylVMRH 493 (669)
T KOG2337|consen 415 ATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINA-ALGFDSYLVMRH 493 (669)
T ss_pred ccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeee-ecccceeEEEec
Confidence 66554443 11 2235678999999999999999999888888888888887 678888775532
Q ss_pred C--------------------CCCCceeecCCCCCCcccc-----ccccCCCcccchHHHHHHHHHHHHHHHHhcCC---
Q 012280 228 Y--------------------NGGPCYRCLFPTPPPTTAC-----QRCADSGVLGVVPGIIGCLQALEAIKVASAVG--- 279 (467)
Q Consensus 228 ~--------------------~~~~C~~C~~~~~~~~~~~-----~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~--- 279 (467)
. ..-+||.|-.-..|..... +.|. |.-|-.+.|++-.|.|-+--+...+
T Consensus 494 G~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCT---VtRPG~a~IA~alAVELlvslLQhP~~~ 570 (669)
T KOG2337|consen 494 GTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCT---VTRPGVANIASALAVELLVSLLQHPLGY 570 (669)
T ss_pred CCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheee---ccCCchhHHHHHHHHHHHHHHHhCcccc
Confidence 1 1346999987665543222 2343 4455556666666777666555443
Q ss_pred -CCCC--------CceeEe-----ecCCCeEEEEEee-ccCCCCCccCCC
Q 012280 280 -EPLS--------GRMLLF-----DALSARIRIVKIR-GRSSQCEACGEN 314 (467)
Q Consensus 280 -~~~~--------~~~~~~-----d~~~~~~~~~~~~-~~~~~C~~Cg~~ 314 (467)
.+.+ ...+.. -++-.+|..+.+. .+-+.|.+||+.
T Consensus 571 a~~~s~~~~~n~~~tvLG~lPHQIRGfL~nFs~i~~~~~af~qC~ACS~~ 620 (669)
T KOG2337|consen 571 AQNSSEETEENEPTTVLGILPHQIRGFLHNFSNILPSTQAFDQCTACSEA 620 (669)
T ss_pred ccCCCcccccCCCCcccccccHHHHHhhhhhhhhccccccccccchhhHH
Confidence 0000 011111 1122344444443 467899999975
No 55
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.80 E-value=9e-20 Score=152.43 Aligned_cols=99 Identities=18% Similarity=0.339 Sum_probs=82.1
Q ss_pred ccCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCCh
Q 012280 350 RISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGN 429 (467)
Q Consensus 350 rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~ 429 (467)
.||++++.+++.+ ++.+|||||++.||+.+|||||+|||+..+......+..... .+++++|||||++|+
T Consensus 3 ~is~~~l~~~~~~-~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~---------~~~~~~ivvyC~~G~ 72 (101)
T cd01518 3 YLSPAEWNELLED-PEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLD---------LLKGKKVLMYCTGGI 72 (101)
T ss_pred cCCHHHHHHHHcC-CCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhh---------hcCCCEEEEECCCch
Confidence 5899999998864 467899999999999999999999999886543223322111 133589999999999
Q ss_pred hHHHHHHHHHHcCCCCeEEccccHHHHhh
Q 012280 430 DSQRAVQALHKLGFTSARDIIGGLESWAN 458 (467)
Q Consensus 430 ~S~~A~~~L~~~G~~~v~~l~GGl~aW~~ 458 (467)
+|..|+.+|+.+||++|+++.||+.+|..
T Consensus 73 rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 73 RCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred hHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 99999999999999999999999999963
No 56
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.78 E-value=2.8e-19 Score=149.13 Aligned_cols=98 Identities=16% Similarity=0.382 Sum_probs=80.5
Q ss_pred cCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccc-hhhHHhhhhhhhhcCCCCCCCCeEEEEcCCCh
Q 012280 351 ISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRL-PEISSAMKEKEEHRGSNASSGSNLYVVCRRGN 429 (467)
Q Consensus 351 Is~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~ 429 (467)
||++|+.++++++++.+|||||++.+|..+|||||+|||+..+.... ....+.... .+++++|||||++|.
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~--------~~~~~~ivv~C~~G~ 72 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQ--------LPDDQEVTVICAKEG 72 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhh--------CCCCCeEEEEcCCCC
Confidence 68899999998876789999999999999999999999998765432 000111111 123589999999999
Q ss_pred hHHHHHHHHHHcCCCCeEEccccHHHHh
Q 012280 430 DSQRAVQALHKLGFTSARDIIGGLESWA 457 (467)
Q Consensus 430 ~S~~A~~~L~~~G~~~v~~l~GGl~aW~ 457 (467)
+|..|+..|++.||+ ++++.||+.+|.
T Consensus 73 rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 73 SSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred cHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 999999999999998 999999999996
No 57
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.78 E-value=4.4e-19 Score=146.61 Aligned_cols=93 Identities=18% Similarity=0.269 Sum_probs=78.8
Q ss_pred cCHHHHHHHhccC-CCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCCh
Q 012280 351 ISSKEYKEKVVNG-EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGN 429 (467)
Q Consensus 351 Is~~e~~~~l~~~-~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~ 429 (467)
||++|+.+++.++ ++.+|||||++.+|..+|||||+|||+.++......+.. .++++||+||.+|+
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~~~~~-------------~~~~~iv~~c~~G~ 67 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAP-------------VRGARIVLADDDGV 67 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHHHhcc-------------cCCCeEEEECCCCC
Confidence 6889999999775 357899999999999999999999999876553322211 12478999999999
Q ss_pred hHHHHHHHHHHcCCCCeEEccccHHHHh
Q 012280 430 DSQRAVQALHKLGFTSARDIIGGLESWA 457 (467)
Q Consensus 430 ~S~~A~~~L~~~G~~~v~~l~GGl~aW~ 457 (467)
+|..++.+|+.+||+ |+.+.||+.+|.
T Consensus 68 rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 68 RADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred hHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 999999999999998 999999999996
No 58
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=99.78 E-value=2.1e-19 Score=145.00 Aligned_cols=83 Identities=49% Similarity=0.993 Sum_probs=60.8
Q ss_pred CCCCceeecCCCCCCccccccccCCCcccchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeeccCCCC
Q 012280 229 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQC 308 (467)
Q Consensus 229 ~~~~C~~C~~~~~~~~~~~~~c~~~g~~g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~C 308 (467)
+++|||||+||.. +...++|.+.||+||+++++|+++|+||||+|+|.++++.++++.||+.+.+|+++++. |+|+|
T Consensus 1 g~~pC~rCl~p~~--~~~~~~C~~~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~i~~~-k~~~C 77 (84)
T PF05237_consen 1 GKTPCYRCLFPEP--PESAPTCAEAGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRSIRIK-KNPDC 77 (84)
T ss_dssp -T---HHHHHTTS--S--TTSSSTS-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEEEE-----TT-
T ss_pred CCCceehhcCCCC--CccCCCccccccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEEEecC-CCccC
Confidence 4689999999998 56667999999999999999999999999999999999999999999999999999998 99999
Q ss_pred CccCCC
Q 012280 309 EACGEN 314 (467)
Q Consensus 309 ~~Cg~~ 314 (467)
++||.+
T Consensus 78 ~~C~~~ 83 (84)
T PF05237_consen 78 PVCGPK 83 (84)
T ss_dssp TTT---
T ss_pred cCcCcC
Confidence 999974
No 59
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.76 E-value=1.8e-18 Score=144.57 Aligned_cols=99 Identities=30% Similarity=0.606 Sum_probs=84.3
Q ss_pred cCHHHHHHHhccC-CCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCCh
Q 012280 351 ISSKEYKEKVVNG-EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGN 429 (467)
Q Consensus 351 Is~~e~~~~l~~~-~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~ 429 (467)
|+++++.+++..+ .+.++||||+..+|..+|||||+|+|+.++.++...+... +++++||+||++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~~~~~~~------------~~~~~vv~~c~~g~ 69 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELDSD------------NPDKDIVVLCHHGG 69 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHHHHhccc------------CCCCeEEEEeCCCc
Confidence 7899999999765 4578999999999999999999999998876543332221 23589999999999
Q ss_pred hHHHHHHHHHHcCCCCeEEccccHHHHhhCcC
Q 012280 430 DSQRAVQALHKLGFTSARDIIGGLESWANDVD 461 (467)
Q Consensus 430 ~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~d 461 (467)
+|..++..|.+.||++++.+.||+.+|...++
T Consensus 70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~ 101 (101)
T cd01528 70 RSMQVAQWLLRQGFENVYNLQGGIDAWSLEVD 101 (101)
T ss_pred hHHHHHHHHHHcCCccEEEecCCHHHHhhhcC
Confidence 99999999999999999999999999987653
No 60
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.75 E-value=2.5e-18 Score=141.90 Aligned_cols=93 Identities=34% Similarity=0.621 Sum_probs=81.2
Q ss_pred ccCHHHHHHHhccCCCeEEEEecCcccccc--cCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCC
Q 012280 350 RISSKEYKEKVVNGEAHILVDVRPAHHFRI--VSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 427 (467)
Q Consensus 350 rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~--~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~ 427 (467)
+|+++++.++++++.+.++||||++.+|.. +|||||+|+|+.++.++... + +++++|||||+.
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~~~----~-----------~~~~~ivv~c~~ 65 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGD----L-----------DRDRPVVVYCYH 65 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHHHhh----c-----------CCCCCEEEEeCC
Confidence 588999999887655689999999999999 99999999999977553322 1 235899999999
Q ss_pred ChhHHHHHHHHHHcCCCCeEEccccHHHHh
Q 012280 428 GNDSQRAVQALHKLGFTSARDIIGGLESWA 457 (467)
Q Consensus 428 G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~ 457 (467)
|.+|..+++.|+..||++|+++.||+.+|.
T Consensus 66 g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 66 GNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred CChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 999999999999999999999999999996
No 61
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.9e-18 Score=144.02 Aligned_cols=110 Identities=23% Similarity=0.401 Sum_probs=87.1
Q ss_pred CCCCccCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccc----hhhHHhhhhhhhhcCCCCCCCCeE
Q 012280 346 SADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRL----PEISSAMKEKEEHRGSNASSGSNL 421 (467)
Q Consensus 346 ~~~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~----~~l~~~~~~~~~~~~~~~~~~~~I 421 (467)
+....+++++.+++++.++ +++||||+++||.++|+|.|||||+....... .++.+.+.... ...+++|
T Consensus 20 ~~~~sv~~~qvk~L~~~~~-~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~k------p~~d~ei 92 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPD-VVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSK------PPHDKEI 92 (136)
T ss_pred CCcEEEEHHHHHHHhcCCC-EEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccC------CCCCCcE
Confidence 3346789999999998764 89999999999999999999999996544321 22222111111 1235799
Q ss_pred EEEcCCChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 422 YVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 422 vvvCr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
+|+|++|.||..|...|...||+||.+|.||+.+|.+.+.|
T Consensus 93 If~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~ 133 (136)
T KOG1530|consen 93 IFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGP 133 (136)
T ss_pred EEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCC
Confidence 99999999999999999999999999999999999987543
No 62
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.74 E-value=4.9e-18 Score=143.72 Aligned_cols=99 Identities=26% Similarity=0.456 Sum_probs=84.9
Q ss_pred CCccCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCC
Q 012280 348 DSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 427 (467)
Q Consensus 348 ~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~ 427 (467)
.+.|+++++.++++++ +.++||||++.+|..+|||||+|+|+..+.+++..+ +.+.+|+|||..
T Consensus 4 ~~~is~~el~~~l~~~-~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~~~~~---------------~~~~~ivv~c~~ 67 (108)
T PRK00162 4 FECINVEQAHQKLQEG-GAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFMRQA---------------DFDTPVMVMCYH 67 (108)
T ss_pred ccccCHHHHHHHHHcC-CCEEEEcCCHHHHhcCCCCCCeECCHHHHHHHHHhc---------------CCCCCEEEEeCC
Confidence 4679999999988654 368999999999999999999999998765543322 124789999999
Q ss_pred ChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 428 GNDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 428 G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
|.+|..++..|+..||++|+++.||+.+|...+.|
T Consensus 68 g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~ 102 (108)
T PRK00162 68 GNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPA 102 (108)
T ss_pred CCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999987654
No 63
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.74 E-value=5.4e-18 Score=141.00 Aligned_cols=96 Identities=26% Similarity=0.415 Sum_probs=82.6
Q ss_pred CccCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCC
Q 012280 349 SRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRG 428 (467)
Q Consensus 349 ~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G 428 (467)
.+|+++|+.++++.+ .+|||||++.+|..+|||||+|||+..+...... .+++++||+||++|
T Consensus 2 ~~i~~~el~~~~~~~--~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~~~---------------~~~~~~iv~~c~~g 64 (99)
T cd01527 2 TTISPNDACELLAQG--AVLVDIREPDEYLRERIPGARLVPLSQLESEGLP---------------LVGANAIIFHCRSG 64 (99)
T ss_pred CccCHHHHHHHHHCC--CEEEECCCHHHHHhCcCCCCEECChhHhcccccC---------------CCCCCcEEEEeCCC
Confidence 368999999988764 6899999999999999999999999887552211 12357999999999
Q ss_pred hhHHHHHHHHHHcCCCCeEEccccHHHHhhCcC
Q 012280 429 NDSQRAVQALHKLGFTSARDIIGGLESWANDVD 461 (467)
Q Consensus 429 ~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~d 461 (467)
.+|..++..|++.||.+++++.||+.+|...+.
T Consensus 65 ~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~ 97 (99)
T cd01527 65 MRTQQNAERLAAISAGEAYVLEGGLDAWKAAGL 97 (99)
T ss_pred chHHHHHHHHHHcCCccEEEeeCCHHHHHHCcC
Confidence 999999999999999999999999999998754
No 64
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.73 E-value=9.4e-18 Score=141.10 Aligned_cols=100 Identities=28% Similarity=0.441 Sum_probs=79.9
Q ss_pred CHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccc----hhhHHhhhhhhhhcCCCCCCCCeEEEEcCC
Q 012280 352 SSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRL----PEISSAMKEKEEHRGSNASSGSNLYVVCRR 427 (467)
Q Consensus 352 s~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~----~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~ 427 (467)
|++++.++++.+++.+|||||++.+|..+|||||+|+|+..+.+.. +++.+.+... ..+++++|||||++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ivv~c~~ 75 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFP------KPSKDKELIFYCKA 75 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhccc------CCCCCCeEEEECCC
Confidence 6788888876245689999999999999999999999998865421 1222222111 11346899999999
Q ss_pred ChhHHHHHHHHHHcCCCCeEEccccHHHHh
Q 012280 428 GNDSQRAVQALHKLGFTSARDIIGGLESWA 457 (467)
Q Consensus 428 G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~ 457 (467)
|++|..+++.|+.+||++|+.+.||+.+|.
T Consensus 76 g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 76 GVRSKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred cHHHHHHHHHHHHcCCccceecCCcHHHHc
Confidence 999999999999999999999999999996
No 65
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.72 E-value=1.6e-17 Score=139.53 Aligned_cols=98 Identities=22% Similarity=0.300 Sum_probs=79.5
Q ss_pred cCHHHHHHHhccC-CCeEEEEecCcccccccCCCCceecCchhhhcc---chhhH--HhhhhhhhhcCCCCCCCCeEEEE
Q 012280 351 ISSKEYKEKVVNG-EAHILVDVRPAHHFRIVSLPNSINIPLSDLESR---LPEIS--SAMKEKEEHRGSNASSGSNLYVV 424 (467)
Q Consensus 351 Is~~e~~~~l~~~-~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~---~~~l~--~~~~~~~~~~~~~~~~~~~Ivvv 424 (467)
||+++++++++++ ++.+|||||+..+|..+|||||+|||+..+... +..+. ..+.. ..+++||+|
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~---------~~~~~vv~~ 71 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN---------YKGKIIVIV 71 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh---------hcCCeEEEE
Confidence 6899999999764 457899999999999999999999999876421 11111 11111 124799999
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEccccHHHHh
Q 012280 425 CRRGNDSQRAVQALHKLGFTSARDIIGGLESWA 457 (467)
Q Consensus 425 Cr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~ 457 (467)
|+.|++|..+++.|+.+||++|+++.||+.+|+
T Consensus 72 c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 72 SHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred eCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 999999999999999999999999999999995
No 66
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.71 E-value=1.7e-17 Score=138.61 Aligned_cols=101 Identities=22% Similarity=0.367 Sum_probs=79.5
Q ss_pred cCHHHHHHHhccCCCeEEEEecCcccc-cccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCCh
Q 012280 351 ISSKEYKEKVVNGEAHILVDVRPAHHF-RIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGN 429 (467)
Q Consensus 351 Is~~e~~~~l~~~~~~~lIDVR~~~ef-~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~ 429 (467)
||++|+.+++.+ ++.++||||++.+| ..+|||||+|+|+..+..+...... +.. ...+++++|||||.+|+
T Consensus 1 is~~el~~~~~~-~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~-~~~------~~~~~~~~ivv~c~~g~ 72 (103)
T cd01447 1 LSPEDARALLGS-PGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSP-YHK------PAFAEDKPFVFYCASGW 72 (103)
T ss_pred CCHHHHHHHHhC-CCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCcccc-ccc------cCCCCCCeEEEEcCCCC
Confidence 688999998865 35789999999998 5799999999998776543221110 000 01134689999999999
Q ss_pred hHHHHHHHHHHcCCCCeEEccccHHHHhhC
Q 012280 430 DSQRAVQALHKLGFTSARDIIGGLESWAND 459 (467)
Q Consensus 430 ~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~ 459 (467)
+|..+++.|+.+||++|+.+.||+.+|...
T Consensus 73 ~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~ 102 (103)
T cd01447 73 RSALAGKTLQDMGLKPVYNIEGGFKDWKEA 102 (103)
T ss_pred cHHHHHHHHHHcChHHhEeecCcHHHHhhc
Confidence 999999999999999999999999999764
No 67
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.71 E-value=2e-17 Score=135.28 Aligned_cols=89 Identities=27% Similarity=0.503 Sum_probs=76.0
Q ss_pred cCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChh
Q 012280 351 ISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGND 430 (467)
Q Consensus 351 Is~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~ 430 (467)
++++|+.+++. ++.++||+|+..+|..+|||||+|+|+.++..+...+ +++++||+||+.|.+
T Consensus 1 ~~~~e~~~~~~--~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~~~~~---------------~~~~~vvl~c~~g~~ 63 (90)
T cd01524 1 VQWHELDNYRA--DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDRLNEL---------------PKDKEIIVYCAVGLR 63 (90)
T ss_pred CCHHHHHHHhc--CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHHHHhc---------------CCCCcEEEEcCCChh
Confidence 46889999883 3568999999999999999999999998765433211 224789999999999
Q ss_pred HHHHHHHHHHcCCCCeEEccccHHHHh
Q 012280 431 SQRAVQALHKLGFTSARDIIGGLESWA 457 (467)
Q Consensus 431 S~~A~~~L~~~G~~~v~~l~GGl~aW~ 457 (467)
|..+++.|++.|| +++++.||+.+|.
T Consensus 64 a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 64 GYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 9999999999999 9999999999996
No 68
>PLN02160 thiosulfate sulfurtransferase
Probab=99.71 E-value=3.7e-17 Score=144.17 Aligned_cols=106 Identities=23% Similarity=0.381 Sum_probs=83.0
Q ss_pred CCccCHHHHHHHhccCCCeEEEEecCcccccccCCCCc--eecCchhhhcc--c--hhhHHhhhhhhhhcCCCCCCCCeE
Q 012280 348 DSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNS--INIPLSDLESR--L--PEISSAMKEKEEHRGSNASSGSNL 421 (467)
Q Consensus 348 ~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgS--inIP~~~l~~~--~--~~l~~~~~~~~~~~~~~~~~~~~I 421 (467)
...|+++++.++++++ .+|||||++.||..|||||| +|||+..+... + .++...+... .+++++|
T Consensus 14 ~~~i~~~e~~~~~~~~--~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~I 84 (136)
T PLN02160 14 VVSVDVSQAKTLLQSG--HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSL-------LNPADDI 84 (136)
T ss_pred eeEeCHHHHHHHHhCC--CEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhc-------cCCCCcE
Confidence 3578999999988754 58999999999999999999 89998543211 1 1111111111 1345899
Q ss_pred EEEcCCChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 422 YVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 422 vvvCr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
||||++|++|..|+..|.+.||++|+++.||+.+|.+.+.|
T Consensus 85 ivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p 125 (136)
T PLN02160 85 LVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFP 125 (136)
T ss_pred EEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCC
Confidence 99999999999999999999999999999999999998654
No 69
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.70 E-value=3.5e-17 Score=140.64 Aligned_cols=102 Identities=22% Similarity=0.414 Sum_probs=82.5
Q ss_pred cCHHHHHHHhccCCCeEEEEecCccccc-ccCCCCceecCchhhhccc--hhhHHhhhhhhhhcCCCCCCCCeEEEEcCC
Q 012280 351 ISSKEYKEKVVNGEAHILVDVRPAHHFR-IVSLPNSINIPLSDLESRL--PEISSAMKEKEEHRGSNASSGSNLYVVCRR 427 (467)
Q Consensus 351 Is~~e~~~~l~~~~~~~lIDVR~~~ef~-~~hIpgSinIP~~~l~~~~--~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~ 427 (467)
||++++.++++++++.++||||++.+|+ .+|||||+|+|+..+.... ..+...+... .+++++||+||++
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~-------~~~~~~ivv~C~~ 73 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEK-------VGKDRPVLLLCRS 73 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhh-------CCCCCeEEEEcCC
Confidence 6899999999886678999999999999 9999999999998765421 1111111111 0345899999999
Q ss_pred ChhHHHHHHHHHHcCCCCeEEccccHHHHhhC
Q 012280 428 GNDSQRAVQALHKLGFTSARDIIGGLESWAND 459 (467)
Q Consensus 428 G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~ 459 (467)
|.+|..++..|+.+||++++.+.||+.+|...
T Consensus 74 G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 74 GNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred CccHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 99999999999999999999999999999653
No 70
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.70 E-value=6.2e-17 Score=157.32 Aligned_cols=107 Identities=12% Similarity=0.310 Sum_probs=88.3
Q ss_pred CCCccCHHHHHHHhccC-----CCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeE
Q 012280 347 ADSRISSKEYKEKVVNG-----EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNL 421 (467)
Q Consensus 347 ~~~rIs~~e~~~~l~~~-----~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~I 421 (467)
....|+++++.+++.++ ++.+|||||++.||+.||||||+|||+.++.++...+.+.... .++++|
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~~~~~~---------~kdk~I 178 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRAD---------LAGKTV 178 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHHhhhhh---------cCCCeE
Confidence 34679999999988763 3478999999999999999999999998876643333332111 135899
Q ss_pred EEEcCCChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 422 YVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 422 vvvCr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
++||++|.+|..|+..|++.||++|+++.||+.+|.+++..
T Consensus 179 vvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~~~~ 219 (257)
T PRK05320 179 VSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEEVGG 219 (257)
T ss_pred EEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHhCCC
Confidence 99999999999999999999999999999999999987643
No 71
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.69 E-value=6.5e-17 Score=137.38 Aligned_cols=99 Identities=25% Similarity=0.447 Sum_probs=82.2
Q ss_pred CccCHHHHHHHhccC-CCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCC
Q 012280 349 SRISSKEYKEKVVNG-EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 427 (467)
Q Consensus 349 ~rIs~~e~~~~l~~~-~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~ 427 (467)
..|+++|+.++++++ ++.+|||||++.+|..+|||||+|||+..+..+. + .. .+++.+|||||+.
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~~--~-~~-----------i~~~~~vvvyc~~ 73 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICENA--T-AK-----------LDKEKLFVVYCDG 73 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhHh--h-hc-----------CCCCCeEEEEECC
Confidence 468999999999875 5689999999999999999999999998765321 0 10 1235899999998
Q ss_pred C--hhHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 428 G--NDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 428 G--~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
| ++|..+++.|+.+||+ ++.+.||+.+|...+.|
T Consensus 74 g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~ 109 (110)
T cd01521 74 PGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYA 109 (110)
T ss_pred CCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCC
Confidence 7 4899999999999995 99999999999987643
No 72
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.69 E-value=9.8e-17 Score=140.10 Aligned_cols=102 Identities=25% Similarity=0.376 Sum_probs=77.5
Q ss_pred cCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccc-----------------------hhhHHhhhhh
Q 012280 351 ISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRL-----------------------PEISSAMKEK 407 (467)
Q Consensus 351 Is~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~-----------------------~~l~~~~~~~ 407 (467)
||++|+.+++. ++.+|||||++.||..+|||||+|||+..+.... ..+...+...
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEA 78 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 68999999886 3468999999999999999999999997543210 0111111110
Q ss_pred hhhcCCCCCCCCeEEEEcC-CChhHHHHHHHHHHcCCCCeEEccccHHHHhh
Q 012280 408 EEHRGSNASSGSNLYVVCR-RGNDSQRAVQALHKLGFTSARDIIGGLESWAN 458 (467)
Q Consensus 408 ~~~~~~~~~~~~~IvvvCr-~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~ 458 (467)
. ....+++++|||||. .|.+|..+++.|+.+|| +++++.||+.+|..
T Consensus 79 ~---~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 79 W---EARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred H---HhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 0 001245789999996 68999999999999999 69999999999975
No 73
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.69 E-value=7.1e-17 Score=133.57 Aligned_cols=87 Identities=23% Similarity=0.353 Sum_probs=71.3
Q ss_pred CCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcC
Q 012280 363 GEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLG 442 (467)
Q Consensus 363 ~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A~~~L~~~G 442 (467)
+++.++||||++.+|..+|||||+|+|+.++......+.. +.. ..++++|||||++|++|..++.+|+..|
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~~~~~~~-~~~--------~~~~~~ivv~c~~g~~s~~~~~~l~~~G 80 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQA-LEA--------PGRATRYVLTCDGSLLARFAAQELLALG 80 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCCHHHHHH-hhc--------CCCCCCEEEEeCChHHHHHHHHHHHHcC
Confidence 3567899999999999999999999999876544333321 111 1345899999999999999999999999
Q ss_pred CCCeEEccccHHHHhh
Q 012280 443 FTSARDIIGGLESWAN 458 (467)
Q Consensus 443 ~~~v~~l~GGl~aW~~ 458 (467)
|++|+.+.||+.+|..
T Consensus 81 ~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 81 GKPVALLDGGTSAWVA 96 (96)
T ss_pred CCCEEEeCCCHHHhcC
Confidence 9999999999999963
No 74
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.68 E-value=6.7e-17 Score=139.74 Aligned_cols=100 Identities=16% Similarity=0.272 Sum_probs=79.7
Q ss_pred CccCHHHHHHHhccC-----CCeEEEEecCcccccccCCCCceecCch-hhhccchhhHHhhhhhhhhcCCCCCCCCeEE
Q 012280 349 SRISSKEYKEKVVNG-----EAHILVDVRPAHHFRIVSLPNSINIPLS-DLESRLPEISSAMKEKEEHRGSNASSGSNLY 422 (467)
Q Consensus 349 ~rIs~~e~~~~l~~~-----~~~~lIDVR~~~ef~~~hIpgSinIP~~-~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Iv 422 (467)
..||++|+.+++.++ ++.+|||||++.+|..+|||||+|||+. .+.+.+...... ...+++++||
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~~~~~~---------~~~~~~~~vv 72 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGV---------ASKKKRRVLI 72 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHHHhhcc---------cccCCCCEEE
Confidence 359999999999764 4688999999999999999999999997 454422111000 0013468999
Q ss_pred EEcC-CChhHHHHHHHHHHc------------CCCCeEEccccHHHHh
Q 012280 423 VVCR-RGNDSQRAVQALHKL------------GFTSARDIIGGLESWA 457 (467)
Q Consensus 423 vvCr-~G~~S~~A~~~L~~~------------G~~~v~~l~GGl~aW~ 457 (467)
|||+ +|++|..|++.|+.+ ||.+|++++||+.+|.
T Consensus 73 ~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 73 FHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 9997 999999999999984 9999999999999984
No 75
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.68 E-value=2e-16 Score=136.62 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=82.4
Q ss_pred cCHHHHHHHhccCCCeEEEEecCc-------ccccccCCCCceecCchhhhccc----------hhhHHhhhhhhhhcCC
Q 012280 351 ISSKEYKEKVVNGEAHILVDVRPA-------HHFRIVSLPNSINIPLSDLESRL----------PEISSAMKEKEEHRGS 413 (467)
Q Consensus 351 Is~~e~~~~l~~~~~~~lIDVR~~-------~ef~~~hIpgSinIP~~~l~~~~----------~~l~~~~~~~~~~~~~ 413 (467)
|+++++.+++.+ ++.+|||||+. .+|..+|||||+|||+.++.... +++.+.+...
T Consensus 2 i~~~~l~~~l~~-~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (122)
T cd01448 2 VSPDWLAEHLDD-PDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSL------ 74 (122)
T ss_pred cCHHHHHHHhCC-CCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHc------
Confidence 789999998876 45789999999 99999999999999998765421 2222322211
Q ss_pred CCCCCCeEEEEcCC-ChhHHHHHHHHHHcCCCCeEEccccHHHHhhC
Q 012280 414 NASSGSNLYVVCRR-GNDSQRAVQALHKLGFTSARDIIGGLESWAND 459 (467)
Q Consensus 414 ~~~~~~~IvvvCr~-G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~ 459 (467)
..+++++|+|||++ |.+|..+++.|+.+||++|++++||+.+|...
T Consensus 75 ~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~ 121 (122)
T cd01448 75 GISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAE 121 (122)
T ss_pred CCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhC
Confidence 12457899999999 58999999999999999999999999999875
No 76
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.67 E-value=4.6e-16 Score=141.25 Aligned_cols=111 Identities=15% Similarity=0.268 Sum_probs=82.4
Q ss_pred CCCCccCHHHHHHHhccCCCeEEEEecCcc----cccc---------cCCCCceecCchh---hhccc-hhhHHhhhhhh
Q 012280 346 SADSRISSKEYKEKVVNGEAHILVDVRPAH----HFRI---------VSLPNSINIPLSD---LESRL-PEISSAMKEKE 408 (467)
Q Consensus 346 ~~~~rIs~~e~~~~l~~~~~~~lIDVR~~~----ef~~---------~hIpgSinIP~~~---l~~~~-~~l~~~~~~~~ 408 (467)
.....||++++.+++.++ +.+|||||+.. +|.. +|||||+|||+.. +.... ..+.+.+...
T Consensus 33 ~~~~~vs~~el~~~l~~~-~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~~~- 110 (162)
T TIGR03865 33 KGARVLDTEAAQALLARG-PVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLERA- 110 (162)
T ss_pred CCccccCHHHHHHHHhCC-CcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHHHh-
Confidence 446789999999999764 47899999876 3543 4999999999643 22211 1122222111
Q ss_pred hhcCCCCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 409 EHRGSNASSGSNLYVVCRRGN-DSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 409 ~~~~~~~~~~~~IvvvCr~G~-~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
...+++++||+||++|. +|..+++.|+.+||++|++|.||+.+|...+.|
T Consensus 111 ----~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~P 161 (162)
T TIGR03865 111 ----TGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLP 161 (162)
T ss_pred ----cCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCC
Confidence 11135689999999997 899999999999999999999999999988654
No 77
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.66 E-value=2e-16 Score=135.65 Aligned_cols=100 Identities=23% Similarity=0.381 Sum_probs=80.0
Q ss_pred cCHHHHHHHhccCCCeEEEEecCcccccc-----------cCCCCceecCchhhhcc------chhhHHhhhhhhhhcCC
Q 012280 351 ISSKEYKEKVVNGEAHILVDVRPAHHFRI-----------VSLPNSINIPLSDLESR------LPEISSAMKEKEEHRGS 413 (467)
Q Consensus 351 Is~~e~~~~l~~~~~~~lIDVR~~~ef~~-----------~hIpgSinIP~~~l~~~------~~~l~~~~~~~~~~~~~ 413 (467)
+|++++.+++++ ++.+|||||+..+|.. +|||||+|+|+..+... .+++...+....
T Consensus 1 ~s~~~l~~~l~~-~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----- 74 (118)
T cd01449 1 VTAEEVLANLDS-GDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALG----- 74 (118)
T ss_pred CCHHHHHHhcCC-CCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcC-----
Confidence 578899888764 3578999999999987 99999999999876542 122323222211
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCeEEccccHHHHh
Q 012280 414 NASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWA 457 (467)
Q Consensus 414 ~~~~~~~IvvvCr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~ 457 (467)
.+++++||+||++|.+|..+++.|+.+||++++.+.||+.+|.
T Consensus 75 -~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 75 -ITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred -CCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 1346899999999999999999999999999999999999996
No 78
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.66 E-value=2e-16 Score=133.78 Aligned_cols=102 Identities=29% Similarity=0.539 Sum_probs=77.6
Q ss_pred CHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhcc-----chhhHHhhhhhhhhcCCCCCCCCeEEEEcC
Q 012280 352 SSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESR-----LPEISSAMKEKEEHRGSNASSGSNLYVVCR 426 (467)
Q Consensus 352 s~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~-----~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr 426 (467)
|++|+++++ ++++.+|||||+..+|..+|||||+|||+..+... ...+........ ...+.+.+|||||+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iv~yc~ 75 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELG----KKIDKDKDIVFYCS 75 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHT----HGSTTTSEEEEEES
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCcccccccccccccccccccccccccccc----ccccccccceeeee
Confidence 689999999 55679999999999999999999999999665111 111111111110 11234578999999
Q ss_pred CChhHHHHHHH-----HHHcCCCCeEEccccHHHHhh
Q 012280 427 RGNDSQRAVQA-----LHKLGFTSARDIIGGLESWAN 458 (467)
Q Consensus 427 ~G~~S~~A~~~-----L~~~G~~~v~~l~GGl~aW~~ 458 (467)
.|.++..++.. |+++||++|+.++||+.+|.+
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 76 SGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 99988888877 888999999999999999986
No 79
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.66 E-value=3.1e-16 Score=133.86 Aligned_cols=100 Identities=20% Similarity=0.339 Sum_probs=78.0
Q ss_pred CccCHHHHHHHhccC-----CCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEE
Q 012280 349 SRISSKEYKEKVVNG-----EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYV 423 (467)
Q Consensus 349 ~rIs~~e~~~~l~~~-----~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv 423 (467)
..||++|+++++.++ ++.+|||||+. ||..+|||||+|||+..+.+++.++.+.+.. .+..+||+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~~~~~~~~~~---------~~~~~iv~ 71 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTLPQVYALFSL---------AGVKLAIF 71 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHHHHHHHHhhh---------cCCCEEEE
Confidence 368999999999775 46789999999 9999999999999998876654433332111 12368999
Q ss_pred EcCC-ChhHHHHHHHHHH----cCC--CCeEEccccHHHHhh
Q 012280 424 VCRR-GNDSQRAVQALHK----LGF--TSARDIIGGLESWAN 458 (467)
Q Consensus 424 vCr~-G~~S~~A~~~L~~----~G~--~~v~~l~GGl~aW~~ 458 (467)
||.+ |.+|..++++|.+ .|| .+++++.||+.+|.+
T Consensus 72 ~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~~ 113 (113)
T cd01443 72 YCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWYH 113 (113)
T ss_pred ECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhcC
Confidence 9996 6899888877654 375 689999999999963
No 80
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.65 E-value=5.3e-16 Score=127.53 Aligned_cols=92 Identities=32% Similarity=0.539 Sum_probs=74.1
Q ss_pred CCeEEEEecCcccccccCCCCceecCchhhhccchhhH-----HhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHH
Q 012280 364 EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEIS-----SAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQAL 438 (467)
Q Consensus 364 ~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~-----~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A~~~L 438 (467)
++.+|||||+..+|..+|||||+|+|+..+........ ..... ....++.+|||||+.|.++..+++.|
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~iv~~c~~g~~a~~~~~~l 76 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKR------LGLDKDKPVVVYCRSGNRSAKAAWLL 76 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHH------cCCCCCCeEEEEeCCCcHHHHHHHHH
Confidence 45799999999999999999999999988765422111 11111 11234689999999999999999999
Q ss_pred HHcCCCCeEEccccHHHHhhCcC
Q 012280 439 HKLGFTSARDIIGGLESWANDVD 461 (467)
Q Consensus 439 ~~~G~~~v~~l~GGl~aW~~~~d 461 (467)
+++||++|+++.||+.+|...+.
T Consensus 77 ~~~G~~~v~~l~GG~~~w~~~~~ 99 (100)
T smart00450 77 RELGFKNVYLLDGGYKEWSAAGP 99 (100)
T ss_pred HHcCCCceEEecCCHHHHHhcCC
Confidence 99999999999999999998754
No 81
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.65 E-value=6e-16 Score=132.05 Aligned_cols=101 Identities=19% Similarity=0.308 Sum_probs=81.8
Q ss_pred CccCHHHHHHHhccC-CCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcC-
Q 012280 349 SRISSKEYKEKVVNG-EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCR- 426 (467)
Q Consensus 349 ~rIs~~e~~~~l~~~-~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr- 426 (467)
..|+++++.+++..+ ++.++||||+. +|..+|||||+|+|+..+.....++.+... .+++.+|||||.
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~~~~~~~---------~~~~~~iv~yC~~ 71 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQLVQLLS---------GSKKDTVVFHCAL 71 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHHHHHHHh---------cCCCCeEEEEeec
Confidence 468999999998765 55789999999 999999999999999988765544443210 123579999998
Q ss_pred CChhHHHHHHHHHH--------cCCCCeEEccccHHHHhhC
Q 012280 427 RGNDSQRAVQALHK--------LGFTSARDIIGGLESWAND 459 (467)
Q Consensus 427 ~G~~S~~A~~~L~~--------~G~~~v~~l~GGl~aW~~~ 459 (467)
.|.+|..|++.|.+ .|+.+|+.+.||+.+|...
T Consensus 72 ~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 72 SQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 67899999988754 4999999999999999864
No 82
>PRK01415 hypothetical protein; Validated
Probab=99.64 E-value=4.8e-16 Score=149.15 Aligned_cols=104 Identities=17% Similarity=0.357 Sum_probs=85.9
Q ss_pred CCccCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCC
Q 012280 348 DSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 427 (467)
Q Consensus 348 ~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~ 427 (467)
...|+++++.+++++ ++.++||||++.||+.||||||+|+|+..+.+....+.. ..+ .+++++|++||++
T Consensus 111 g~~i~p~e~~~ll~~-~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~-~~~--------~~k~k~Iv~yCtg 180 (247)
T PRK01415 111 GEYIEPKDWDEFITK-QDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQ-NQE--------LLKGKKIAMVCTG 180 (247)
T ss_pred ccccCHHHHHHHHhC-CCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhh-hhh--------hcCCCeEEEECCC
Confidence 467999999999976 468899999999999999999999998876542211111 011 1346899999999
Q ss_pred ChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcC
Q 012280 428 GNDSQRAVQALHKLGFTSARDIIGGLESWANDVD 461 (467)
Q Consensus 428 G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~d 461 (467)
|.+|.+|+..|++.||++|+.+.||+.+|.+++.
T Consensus 181 GiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~~ 214 (247)
T PRK01415 181 GIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDTQ 214 (247)
T ss_pred ChHHHHHHHHHHHcCCCcEEEechHHHHHHHhcc
Confidence 9999999999999999999999999999998754
No 83
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.64 E-value=4.3e-16 Score=130.13 Aligned_cols=80 Identities=25% Similarity=0.483 Sum_probs=67.3
Q ss_pred CeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCC
Q 012280 365 AHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFT 444 (467)
Q Consensus 365 ~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A~~~L~~~G~~ 444 (467)
...+||||++.+|..+|||||+|||+.++.+.+.++.. +++.+|||||++|++|..++..|+++||+
T Consensus 18 ~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~~~~~-------------~~~~~vvlyC~~G~rS~~aa~~L~~~G~~ 84 (101)
T TIGR02981 18 AEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIATAVP-------------DKNDTVKLYCNAGRQSGMAKDILLDMGYT 84 (101)
T ss_pred CCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHHHhCC-------------CCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 45799999999999999999999999877653322211 22478999999999999999999999999
Q ss_pred CeEEccccHHHHhh
Q 012280 445 SARDIIGGLESWAN 458 (467)
Q Consensus 445 ~v~~l~GGl~aW~~ 458 (467)
++.++ ||+.+|.-
T Consensus 85 ~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 85 HAENA-GGIKDIAM 97 (101)
T ss_pred eEEec-CCHHHhhh
Confidence 99985 99999963
No 84
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.63 E-value=6.5e-16 Score=126.92 Aligned_cols=82 Identities=29% Similarity=0.453 Sum_probs=67.5
Q ss_pred CCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChh--HHHHHHHHHHc
Q 012280 364 EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGND--SQRAVQALHKL 441 (467)
Q Consensus 364 ~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~--S~~A~~~L~~~ 441 (467)
++.+|||||++.+|..+|||||+|||+..+... .... ++ +++++|||||++|++ |..|++.|++.
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~--~~~~-~~----------~~~~~ivl~c~~G~~~~s~~aa~~L~~~ 75 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLSRLELD--AWVR-IP----------RRDTPIVVYGEGGGEDLAPRAARRLSEL 75 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHHHHHhh--hHhh-CC----------CCCCeEEEEeCCCCchHHHHHHHHHHHc
Confidence 458899999999999999999999999875421 1111 11 125799999999986 68999999999
Q ss_pred CCCCeEEccccHHHHhh
Q 012280 442 GFTSARDIIGGLESWAN 458 (467)
Q Consensus 442 G~~~v~~l~GGl~aW~~ 458 (467)
||++|+++.||+.+|..
T Consensus 76 G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 76 GYTDVALLEGGLQGWRA 92 (92)
T ss_pred CccCEEEccCCHHHHcC
Confidence 99999999999999963
No 85
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.63 E-value=7.9e-16 Score=129.88 Aligned_cols=98 Identities=29% Similarity=0.482 Sum_probs=81.2
Q ss_pred HHHHhccCCCeEEEEecCcccccccCCCC-ceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHH
Q 012280 356 YKEKVVNGEAHILVDVRPAHHFRIVSLPN-SINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRA 434 (467)
Q Consensus 356 ~~~~l~~~~~~~lIDVR~~~ef~~~hIpg-SinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A 434 (467)
....+...+..+|||||++.||+.+|||| ++|||+.++.+...... .+++++|+|||++|++|..|
T Consensus 11 ~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~-------------~~~~~~ivv~C~~G~rS~~a 77 (110)
T COG0607 11 EAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE-------------LPDDDPIVVYCASGVRSAAA 77 (110)
T ss_pred HHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc-------------cCCCCeEEEEeCCCCChHHH
Confidence 33344444568999999999999999999 99999999877533322 13358999999999999999
Q ss_pred HHHHHHcCCCCeEEccccHHHHhhCcCCCCCC
Q 012280 435 VQALHKLGFTSARDIIGGLESWANDVDPSFPV 466 (467)
Q Consensus 435 ~~~L~~~G~~~v~~l~GGl~aW~~~~dp~fP~ 466 (467)
++.|++.||.+++++.||+.+|...+.|.-+.
T Consensus 78 a~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 78 AAALKLAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred HHHHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence 99999999999889999999999998776543
No 86
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.61 E-value=1.2e-15 Score=136.00 Aligned_cols=92 Identities=16% Similarity=0.243 Sum_probs=77.5
Q ss_pred HHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHH
Q 012280 356 YKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAV 435 (467)
Q Consensus 356 ~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A~ 435 (467)
+.+++.++.+.+|||||+..+|..+|||||+|+|...+.+.+..+. ++.+|||||..|..|..++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~l~~l~---------------~~~~vVv~c~~g~~a~~aa 66 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQALEKLP---------------AAERYVLTCGSSLLARFAA 66 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHHHHhcC---------------CCCCEEEEeCCChHHHHHH
Confidence 4556666667899999999999999999999999877655433221 1478999999999999999
Q ss_pred HHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 436 QALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 436 ~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
+.|+..|+.+|+++.||+.+|...+.|
T Consensus 67 ~~L~~~G~~~v~~L~GG~~aW~~~g~p 93 (145)
T cd01535 67 ADLAALTVKPVFVLEGGTAAWIAAGLP 93 (145)
T ss_pred HHHHHcCCcCeEEecCcHHHHHHCCCC
Confidence 999999999999999999999988654
No 87
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.60 E-value=2e-15 Score=150.91 Aligned_cols=106 Identities=16% Similarity=0.336 Sum_probs=87.7
Q ss_pred CCCccCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcC
Q 012280 347 ADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCR 426 (467)
Q Consensus 347 ~~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr 426 (467)
....|+++++.+++.+ ++.+|||||++.||+.||||||+|+|+..+.+....+.+.+. ..++++||+||.
T Consensus 110 ~~~~is~~el~~~l~~-~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~l~~~~~---------~~kdk~IvvyC~ 179 (314)
T PRK00142 110 VGTYLKPKEVNELLDD-PDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPWVEENLD---------PLKDKKVVMYCT 179 (314)
T ss_pred CCcccCHHHHHHHhcC-CCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHHHHHhcC---------CCCcCeEEEECC
Confidence 3467999999998876 458999999999999999999999999987654333322111 124689999999
Q ss_pred CChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 427 RGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 427 ~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
+|.+|..|+.+|++.||++|+.+.||+.+|.+.+.+
T Consensus 180 ~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~~~~ 215 (314)
T PRK00142 180 GGIRCEKASAWMKHEGFKEVYQLEGGIITYGEDPET 215 (314)
T ss_pred CCcHHHHHHHHHHHcCCCcEEEecchHHHHHHhhcc
Confidence 999999999999999999999999999999987543
No 88
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.60 E-value=1.3e-15 Score=127.87 Aligned_cols=79 Identities=27% Similarity=0.524 Sum_probs=66.5
Q ss_pred eEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCC
Q 012280 366 HILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTS 445 (467)
Q Consensus 366 ~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A~~~L~~~G~~~ 445 (467)
-.+||+|++.+|..+|||||+|||+.++.+++..+.. +++++||+||++|.+|..++..|.++||++
T Consensus 21 ~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l~~l~~-------------~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~ 87 (104)
T PRK10287 21 EHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVP-------------DKNDTVKLYCNAGRQSGQAKEILSEMGYTH 87 (104)
T ss_pred CEEEECCCHHHHhcCCCCccEECCHHHHHHHHHhcCC-------------CCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence 3799999999999999999999999877654322211 224789999999999999999999999999
Q ss_pred eEEccccHHHHhh
Q 012280 446 ARDIIGGLESWAN 458 (467)
Q Consensus 446 v~~l~GGl~aW~~ 458 (467)
+.. .||+.+|.-
T Consensus 88 v~~-~GG~~~~~~ 99 (104)
T PRK10287 88 AEN-AGGLKDIAM 99 (104)
T ss_pred EEe-cCCHHHHhh
Confidence 977 699999963
No 89
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.57 E-value=4.1e-15 Score=120.14 Aligned_cols=87 Identities=37% Similarity=0.600 Sum_probs=71.5
Q ss_pred HHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHH
Q 012280 357 KEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQ 436 (467)
Q Consensus 357 ~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A~~ 436 (467)
.+++. .++.++||+|++.+|+.+|||||+|+|+..+.... .. . ..+++.+|+|||..|.+|..+++
T Consensus 3 ~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~---~~--~--------~~~~~~~vv~~c~~~~~a~~~~~ 68 (89)
T cd00158 3 KELLD-DEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA---AL--L--------ELDKDKPIVVYCRSGNRSARAAK 68 (89)
T ss_pred HHHhc-CCCeEEEECCCHHHHhccccCCCEecchHHHhhHH---Hh--h--------ccCCCCeEEEEeCCCchHHHHHH
Confidence 34444 45689999999999999999999999998765532 00 0 01335899999999999999999
Q ss_pred HHHHcCCCCeEEccccHHHHh
Q 012280 437 ALHKLGFTSARDIIGGLESWA 457 (467)
Q Consensus 437 ~L~~~G~~~v~~l~GGl~aW~ 457 (467)
.|+++||.+++.+.||+.+|.
T Consensus 69 ~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 69 LLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred HHHHhCcccEEEecCChhhcC
Confidence 999999999999999999994
No 90
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.56 E-value=7.4e-15 Score=151.11 Aligned_cols=99 Identities=27% Similarity=0.514 Sum_probs=83.8
Q ss_pred CccCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCC
Q 012280 349 SRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRG 428 (467)
Q Consensus 349 ~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G 428 (467)
..|+++++.++++++ .++||||++.+|..+|||||+|+|+..+.+++.++ .+ +++++|||||++|
T Consensus 3 ~~is~~el~~~l~~~--~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~---~~----------~~~~~IvvyC~~G 67 (376)
T PRK08762 3 REISPAEARARAAQG--AVLIDVREAHERASGQAEGALRIPRGFLELRIETH---LP----------DRDREIVLICASG 67 (376)
T ss_pred ceeCHHHHHHHHhCC--CEEEECCCHHHHhCCcCCCCEECCHHHHHHHHhhh---cC----------CCCCeEEEEcCCC
Confidence 458999999998654 78999999999999999999999998765433221 11 2358999999999
Q ss_pred hhHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 429 NDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 429 ~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
.+|..|++.|+..||++|+++.||+.+|...+.|
T Consensus 68 ~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p 101 (376)
T PRK08762 68 TRSAHAAATLRELGYTRVASVAGGFSAWKDAGLP 101 (376)
T ss_pred cHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCc
Confidence 9999999999999999999999999999987654
No 91
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.55 E-value=2.8e-14 Score=126.21 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=80.1
Q ss_pred cCHHHHHHHhcc---CCCeEEEEecCc--------ccccc------------cCCCCceecCchhhhccc----------
Q 012280 351 ISSKEYKEKVVN---GEAHILVDVRPA--------HHFRI------------VSLPNSINIPLSDLESRL---------- 397 (467)
Q Consensus 351 Is~~e~~~~l~~---~~~~~lIDVR~~--------~ef~~------------~hIpgSinIP~~~l~~~~---------- 397 (467)
||++++.+.+++ +++.+|||+|+. .+|.. ||||||+|+|+..+...-
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 578999998873 346889999987 88988 999999999988764321
Q ss_pred hhhHHhhhhhhhhcCCCCCCCCeEEEEcCC---ChhHHHHHHHHHHcCCCCeEEccccHHHHhh
Q 012280 398 PEISSAMKEKEEHRGSNASSGSNLYVVCRR---GNDSQRAVQALHKLGFTSARDIIGGLESWAN 458 (467)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~---G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~ 458 (467)
+++.+.+.... -+++.+||+||.. |..+.++++.|+.+|+++|+.|+||+.+|.+
T Consensus 81 ~~~~~~~~~~G------I~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~~ 138 (138)
T cd01445 81 AEFAAMFEAKG------IDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWFH 138 (138)
T ss_pred HHHHHHHHHcC------CCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhhC
Confidence 13333333222 2456899999986 7789999999999999999999999999964
No 92
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.47 E-value=1.9e-13 Score=137.61 Aligned_cols=109 Identities=20% Similarity=0.321 Sum_probs=85.5
Q ss_pred CCccCHHHHHHHhccCCCeEEEEecCcccc-----------cccCCCCceecCchhhhcc------chhhHHhhhhhhhh
Q 012280 348 DSRISSKEYKEKVVNGEAHILVDVRPAHHF-----------RIVSLPNSINIPLSDLESR------LPEISSAMKEKEEH 410 (467)
Q Consensus 348 ~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef-----------~~~hIpgSinIP~~~l~~~------~~~l~~~~~~~~~~ 410 (467)
...++.+++.+.+..+ +..|||+|+..+| ..||||||+|||+..+.+. .+++...+.+..
T Consensus 189 ~~~~~~~~v~~~~~~~-~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~g-- 265 (320)
T PLN02723 189 HLVWTLEQVKKNIEDK-TYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEG-- 265 (320)
T ss_pred cceecHHHHHHhhcCC-CeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcC--
Confidence 3457889998887653 4789999999988 4599999999999876542 234444433221
Q ss_pred cCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcCCCCC
Q 012280 411 RGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDPSFP 465 (467)
Q Consensus 411 ~~~~~~~~~~IvvvCr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp~fP 465 (467)
.+++++||+||.+|.+|..++..|+.+||++|+.|+|||.+|... ++.|
T Consensus 266 ----i~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~--~~~P 314 (320)
T PLN02723 266 ----ISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGAL--PDTP 314 (320)
T ss_pred ----CCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcC--CCCC
Confidence 245689999999999999999999999999999999999999865 4455
No 93
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.44 E-value=3.3e-13 Score=118.36 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=75.7
Q ss_pred cCHHHHHHHhccC-CCeEEEEecCcccccccCCCCceecCchhhhccch-----hhHHhhhhhhhh-cCCCCCCCCeEEE
Q 012280 351 ISSKEYKEKVVNG-EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLP-----EISSAMKEKEEH-RGSNASSGSNLYV 423 (467)
Q Consensus 351 Is~~e~~~~l~~~-~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~-----~l~~~~~~~~~~-~~~~~~~~~~Ivv 423 (467)
||++++.++++.+ ++.++||||+..+|..+|||||+|+|+..+..... .....++..... .... .++.+|||
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~VVv 80 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRR-GESLAVVV 80 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhc-CCCCeEEE
Confidence 7899999999865 57899999999999999999999999987542110 000011110000 0011 13589999
Q ss_pred EcCCChh---------HHHHHHHHHH--cCCCCeEEccccHHHHhhC
Q 012280 424 VCRRGND---------SQRAVQALHK--LGFTSARDIIGGLESWAND 459 (467)
Q Consensus 424 vCr~G~~---------S~~A~~~L~~--~G~~~v~~l~GGl~aW~~~ 459 (467)
||..+.+ +..+++.|.. .++.+|+.++||+.+|...
T Consensus 81 Yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 81 YDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred EeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 9998764 5556666666 3667899999999999875
No 94
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.44 E-value=3.9e-13 Score=133.06 Aligned_cols=105 Identities=20% Similarity=0.300 Sum_probs=81.5
Q ss_pred ccCHHHHHHHhccCCCeEEEEecC----------cccccccCCCCceecCchhhhccc----------hhhHHhhhhhhh
Q 012280 350 RISSKEYKEKVVNGEAHILVDVRP----------AHHFRIVSLPNSINIPLSDLESRL----------PEISSAMKEKEE 409 (467)
Q Consensus 350 rIs~~e~~~~l~~~~~~~lIDVR~----------~~ef~~~hIpgSinIP~~~l~~~~----------~~l~~~~~~~~~ 409 (467)
.+|++++.+.++++ +.+|||||+ +.+|..||||||+|+|+..+.... +.+.+.+.+..
T Consensus 6 lvs~~~l~~~l~~~-~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G- 83 (281)
T PRK11493 6 FVAADWLAEHIDDP-EIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELG- 83 (281)
T ss_pred ccCHHHHHHhcCCC-CeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC-
Confidence 48999999998653 588999997 678999999999999987654321 22333322221
Q ss_pred hcCCCCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCCCeEEccccHHHHhhCcC
Q 012280 410 HRGSNASSGSNLYVVCRRGN-DSQRAVQALHKLGFTSARDIIGGLESWANDVD 461 (467)
Q Consensus 410 ~~~~~~~~~~~IvvvCr~G~-~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~d 461 (467)
.+++.+|||||..|. .+.++++.|+.+||++|+.++||+.+|.+++.
T Consensus 84 -----i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~ 131 (281)
T PRK11493 84 -----VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDL 131 (281)
T ss_pred -----CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCC
Confidence 245689999999876 47788899999999999999999999988754
No 95
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.43 E-value=4.2e-13 Score=135.15 Aligned_cols=109 Identities=13% Similarity=0.237 Sum_probs=83.6
Q ss_pred CCCccCHHHHHHHhccCCCeEEEEec--------C-cccccccCCCCceecCchhhhccc----------hhhHHhhhhh
Q 012280 347 ADSRISSKEYKEKVVNGEAHILVDVR--------P-AHHFRIVSLPNSINIPLSDLESRL----------PEISSAMKEK 407 (467)
Q Consensus 347 ~~~rIs~~e~~~~l~~~~~~~lIDVR--------~-~~ef~~~hIpgSinIP~~~l~~~~----------~~l~~~~~~~ 407 (467)
+...||++++.+.+++ ++.+||||| + ..+|..||||||+|+|+..+.... +.+.+.+.+.
T Consensus 20 ~~~lvs~~~L~~~l~~-~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~ 98 (320)
T PLN02723 20 NEPVVSVDWLHANLRE-PDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSAL 98 (320)
T ss_pred CCceecHHHHHHHhcC-CCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHc
Confidence 3457999999999976 458899996 2 368999999999999987765431 2233333322
Q ss_pred hhhcCCCCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 408 EEHRGSNASSGSNLYVVCRRGN-DSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 408 ~~~~~~~~~~~~~IvvvCr~G~-~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
. -+++.+|||||+.|. .+.++++.|+.+||++|+.|+||+.+|..++.|
T Consensus 99 G------i~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~p 148 (320)
T PLN02723 99 G------IENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYD 148 (320)
T ss_pred C------CCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCC
Confidence 1 134689999999886 567888999999999999999999999987643
No 96
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.42 E-value=4.7e-13 Score=144.91 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=85.1
Q ss_pred ccCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhcc----------chhhHHhhhhhhhhcCCCCCCCC
Q 012280 350 RISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESR----------LPEISSAMKEKEEHRGSNASSGS 419 (467)
Q Consensus 350 rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~----------~~~l~~~~~~~~~~~~~~~~~~~ 419 (467)
-||++++.++++++ +.+|||||+..+|..||||||+|+|+..+... .+++...+.+.. -++++
T Consensus 10 lIs~~eL~~~l~~~-~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lG------I~~d~ 82 (610)
T PRK09629 10 VIEPNDLLERLDAP-ELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELG------HNPDA 82 (610)
T ss_pred eecHHHHHHHhcCC-CEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcC------CCCCC
Confidence 49999999999764 58899999999999999999999998653211 123333333221 24578
Q ss_pred eEEEEcCCCh-hHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 420 NLYVVCRRGN-DSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 420 ~IvvvCr~G~-~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
+|||||+.|+ .+.++++.|+.+|+++|+.|+||+.+|..++.|
T Consensus 83 ~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p 126 (610)
T PRK09629 83 VYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALP 126 (610)
T ss_pred EEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCc
Confidence 9999999875 788999999999999999999999999988754
No 97
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.42 E-value=1.7e-13 Score=136.66 Aligned_cols=94 Identities=27% Similarity=0.431 Sum_probs=69.3
Q ss_pred eEEEEecCcccccccCCCCceecCchhhhccc-----------------------hhhHHhhhhhhhhcCCCCCCCCeEE
Q 012280 366 HILVDVRPAHHFRIVSLPNSINIPLSDLESRL-----------------------PEISSAMKEKEEHRGSNASSGSNLY 422 (467)
Q Consensus 366 ~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~-----------------------~~l~~~~~~~~~~~~~~~~~~~~Iv 422 (467)
.+|||||++.||..+|||||+|||+....++. ..+...+.+.. ...+++..||
T Consensus 3 ~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~----~~~~~~~~vv 78 (311)
T TIGR03167 3 DPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWR----AFADGPPQPL 78 (311)
T ss_pred CEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHH----hhcCCCCcEE
Confidence 57999999999999999999999996543210 01222221110 0012234599
Q ss_pred EEc-CCChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcCCCC
Q 012280 423 VVC-RRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDPSF 464 (467)
Q Consensus 423 vvC-r~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp~f 464 (467)
||| ++|.+|..++++|+.+|| +++++.||+.+|...+.+.+
T Consensus 79 vyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~ 120 (311)
T TIGR03167 79 LYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQL 120 (311)
T ss_pred EEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhh
Confidence 999 578999999999999999 69999999999998876543
No 98
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.42 E-value=4.9e-13 Score=132.32 Aligned_cols=103 Identities=19% Similarity=0.322 Sum_probs=80.2
Q ss_pred CccCHHHHHHHhccCCCeEEEEecCccccc-----------ccCCCCceecCchhhhcc-----chhhHHhhhhhhhhcC
Q 012280 349 SRISSKEYKEKVVNGEAHILVDVRPAHHFR-----------IVSLPNSINIPLSDLESR-----LPEISSAMKEKEEHRG 412 (467)
Q Consensus 349 ~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~-----------~~hIpgSinIP~~~l~~~-----~~~l~~~~~~~~~~~~ 412 (467)
..++.++....+..+ ..+|||+|+..+|. .||||||+|||+..+.+. .+++...+....
T Consensus 153 ~~~~~~~v~~~~~~~-~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g---- 227 (281)
T PRK11493 153 AVVRLTDVLLASHEK-TAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRG---- 227 (281)
T ss_pred ceecHHHHHHhhcCC-CcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcC----
Confidence 345666666655443 46899999999995 599999999999887642 233444333221
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCeEEccccHHHHhh
Q 012280 413 SNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWAN 458 (467)
Q Consensus 413 ~~~~~~~~IvvvCr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~ 458 (467)
.+++++||+||++|.+|..++..|+.+||+++++|+|||..|..
T Consensus 228 --~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~ 271 (281)
T PRK11493 228 --VSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGA 271 (281)
T ss_pred --CCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHcc
Confidence 24468999999999999999999999999999999999999986
No 99
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.41 E-value=3.9e-13 Score=135.86 Aligned_cols=106 Identities=24% Similarity=0.346 Sum_probs=76.7
Q ss_pred cCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccc-----------------------hhhHHhhhhh
Q 012280 351 ISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRL-----------------------PEISSAMKEK 407 (467)
Q Consensus 351 Is~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~-----------------------~~l~~~~~~~ 407 (467)
....+|.+++.+ +.+|||||++.||..+|||||+|||+....+.. ..+...+.+.
T Consensus 3 ~~~~~~~~~~~~--~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~ 80 (345)
T PRK11784 3 PDAQDFRALFLN--DTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEA 80 (345)
T ss_pred CcHHHHHHHHhC--CCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHH
Confidence 346777777643 469999999999999999999999996543210 0111111111
Q ss_pred hhhcCCCCCCCCeEEEEc-CCChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 408 EEHRGSNASSGSNLYVVC-RRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 408 ~~~~~~~~~~~~~IvvvC-r~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
.. ...+++.+||||| ++|.+|..++++|+.+|| +++.+.||+.+|...+.+
T Consensus 81 ~~---~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~ 132 (345)
T PRK11784 81 WA---DFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVID 132 (345)
T ss_pred HH---hcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHH
Confidence 00 0002468999999 678999999999999999 689999999999987643
No 100
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.38 E-value=1.5e-12 Score=140.94 Aligned_cols=105 Identities=10% Similarity=0.267 Sum_probs=83.7
Q ss_pred CCccCHHHHHHHhccCCCeEEEEecCccccc--------ccCCCCceecCchhhhcc------chhhHHhhhhhhhhcCC
Q 012280 348 DSRISSKEYKEKVVNGEAHILVDVRPAHHFR--------IVSLPNSINIPLSDLESR------LPEISSAMKEKEEHRGS 413 (467)
Q Consensus 348 ~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~--------~~hIpgSinIP~~~l~~~------~~~l~~~~~~~~~~~~~ 413 (467)
...++.+++.+.++++ +.+|||+|++.+|. .||||||+|||+..+... .+++.+.+.+..
T Consensus 146 ~~~v~~e~v~~~l~~~-~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~G----- 219 (610)
T PRK09629 146 EPTATREYLQSRLGAA-DLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLG----- 219 (610)
T ss_pred cccccHHHHHHhhCCC-CcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcC-----
Confidence 3468899998888653 57899999999995 699999999999765331 233444433221
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCeEEccccHHHHhhC
Q 012280 414 NASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWAND 459 (467)
Q Consensus 414 ~~~~~~~IvvvCr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~ 459 (467)
.+++++||+||.+|.+|..++..|+.+||++|++|+|||.+|...
T Consensus 220 -i~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~ 264 (610)
T PRK09629 220 -ITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNH 264 (610)
T ss_pred -CCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCC
Confidence 245689999999999999999999999999999999999999875
No 101
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.34 E-value=3.3e-12 Score=125.00 Aligned_cols=109 Identities=25% Similarity=0.382 Sum_probs=85.4
Q ss_pred CCCccCHHHHHHHhccCCCeEEEEecCcccccc----------cCCCCceecCchhhhcc-----chhhHHhhhhhhhhc
Q 012280 347 ADSRISSKEYKEKVVNGEAHILVDVRPAHHFRI----------VSLPNSINIPLSDLESR-----LPEISSAMKEKEEHR 411 (467)
Q Consensus 347 ~~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~----------~hIpgSinIP~~~l~~~-----~~~l~~~~~~~~~~~ 411 (467)
....++.++....++.. ..+|||+|++.+|.. ||||||+|||++++.+. ..+..+.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~-~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~---- 228 (285)
T COG2897 154 VKAVVDATLVADALEVP-AVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYAD---- 228 (285)
T ss_pred ccccCCHHHHHHHhcCC-CeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHh----
Confidence 34567778888777664 467999999999999 99999999999988763 11222222211
Q ss_pred CCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcC
Q 012280 412 GSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVD 461 (467)
Q Consensus 412 ~~~~~~~~~IvvvCr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~d 461 (467)
...+++++||+||++|.+|...+-.|+.+|+.+.+.|+|++..|....+
T Consensus 229 -~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~ 277 (285)
T COG2897 229 -AGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPD 277 (285)
T ss_pred -cCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCC
Confidence 1135678999999999999999999999999888999999999987654
No 102
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.11 E-value=1.3e-10 Score=112.14 Aligned_cols=104 Identities=14% Similarity=0.291 Sum_probs=88.9
Q ss_pred CCccCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCC
Q 012280 348 DSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 427 (467)
Q Consensus 348 ~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~ 427 (467)
...|+++|+.+++.++ +.++||+|..-||++||+.|||+.+...|.+..+++.+..... ++++|+.||-+
T Consensus 112 G~yl~p~~wn~~l~D~-~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~---------~~KkVvmyCTG 181 (308)
T COG1054 112 GTYLSPKDWNELLSDP-DVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLL---------KDKKVVMYCTG 181 (308)
T ss_pred cCccCHHHHHHHhcCC-CeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhc---------cCCcEEEEcCC
Confidence 4568999999999774 5899999999999999999999999998877555554433332 24799999999
Q ss_pred ChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcC
Q 012280 428 GNDSQRAVQALHKLGFTSARDIIGGLESWANDVD 461 (467)
Q Consensus 428 G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~d 461 (467)
|.|..+|..+|+..||+.|+-|+||+-.|.+++.
T Consensus 182 GIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~~ 215 (308)
T COG1054 182 GIRCEKASAWMKENGFKEVYHLEGGILKYLEDVG 215 (308)
T ss_pred ceeehhhHHHHHHhcchhhhcccchHHHHhhhcC
Confidence 9999999999999999999999999999987754
No 103
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.05 E-value=8.6e-10 Score=108.06 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=84.2
Q ss_pred CCCccCHHHHHHHhccC----CCeEEEEecCc--ccccccCCCCceecCchhhhccch----------hhHHhhhhhhhh
Q 012280 347 ADSRISSKEYKEKVVNG----EAHILVDVRPA--HHFRIVSLPNSINIPLSDLESRLP----------EISSAMKEKEEH 410 (467)
Q Consensus 347 ~~~rIs~~e~~~~l~~~----~~~~lIDVR~~--~ef~~~hIpgSinIP~~~l~~~~~----------~l~~~~~~~~~~ 410 (467)
...-||++.+.+.+... .+..++++++. .+|..+|||||+++++..+.+... .+.+.+.+..
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~G-- 86 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELG-- 86 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcC--
Confidence 44568999999988653 24566666665 889999999999999988765422 2333332222
Q ss_pred cCCCCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 411 RGSNASSGSNLYVVCRRGN-DSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 411 ~~~~~~~~~~IvvvCr~G~-~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
. +.+.+||+|...++ .+.+|++.|+-+|.++|++|+||+.+|..++.|
T Consensus 87 ---I-~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p 135 (285)
T COG2897 87 ---I-RNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLP 135 (285)
T ss_pred ---C-CCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCC
Confidence 1 34688999997666 799999999999999999999999999999765
No 104
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.04 E-value=2.3e-10 Score=121.34 Aligned_cols=73 Identities=16% Similarity=0.322 Sum_probs=62.3
Q ss_pred CCeEEEEecCcccccccCCCC----ceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHH
Q 012280 364 EAHILVDVRPAHHFRIVSLPN----SINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALH 439 (467)
Q Consensus 364 ~~~~lIDVR~~~ef~~~hIpg----SinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr~G~~S~~A~~~L~ 439 (467)
++.++||||++.||+.+|||| |+|+|+.++......+ +++++|++||++|++|..|+..|+
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~~~~l---------------~~~~~iivyC~~G~rS~~aa~~L~ 470 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQFGDL---------------DQSKTYLLYCDRGVMSRLQALYLR 470 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHHHhhc---------------CCCCeEEEECCCCHHHHHHHHHHH
Confidence 457899999999999999999 9999999876532221 235799999999999999999999
Q ss_pred HcCCCCeEEccc
Q 012280 440 KLGFTSARDIIG 451 (467)
Q Consensus 440 ~~G~~~v~~l~G 451 (467)
+.||++|+++.+
T Consensus 471 ~~G~~nv~~y~~ 482 (482)
T PRK01269 471 EQGFSNVKVYRP 482 (482)
T ss_pred HcCCccEEecCC
Confidence 999999998753
No 105
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=1.3e-08 Score=100.05 Aligned_cols=105 Identities=14% Similarity=0.210 Sum_probs=77.6
Q ss_pred CCCccCHHHHHHHhccC-----CCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeE
Q 012280 347 ADSRISSKEYKEKVVNG-----EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNL 421 (467)
Q Consensus 347 ~~~rIs~~e~~~~l~~~-----~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~I 421 (467)
...+||++.++.+++.. ..++|||+|-+.||.+|||+||+||+..+.....-........ ..+..-+
T Consensus 154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~~~~~--------~~~~~i~ 225 (325)
T KOG3772|consen 154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKDGVPS--------GSKRVIL 225 (325)
T ss_pred cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhcccccccc--------ccCceeE
Confidence 34789999999999862 2477999999999999999999999988754432111111100 1223567
Q ss_pred EEEcCC-ChhHHHHHHHHHH------------cCCCCeEEccccHHHHhhC
Q 012280 422 YVVCRR-GNDSQRAVQALHK------------LGFTSARDIIGGLESWAND 459 (467)
Q Consensus 422 vvvCr~-G~~S~~A~~~L~~------------~G~~~v~~l~GGl~aW~~~ 459 (467)
||+|.. ..|+.++|+.|+. +-|..+++++||+.+|-..
T Consensus 226 IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 226 IFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred EEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 899985 4699999999984 2555689999999999654
No 106
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.71 E-value=2.9e-07 Score=81.20 Aligned_cols=180 Identities=19% Similarity=0.241 Sum_probs=120.1
Q ss_pred cCcEEEEcCCchHHHHHHHHH---HhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 93 KSSILVIGAGGLGSPALLYLA---ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La---~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
...|.++|||-+|--++..|. +.|..+|.++|+..|++.++-...+. ..+|.+|++-+++ |..-.+.-+|++++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~G--a~~GEyKv~Fi~r-l~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRLG--AKVGEYKVDFIKR-LGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHhC--CCcchhHHHHHHH-hCcCCCCceeeccc
Confidence 456999999999999999987 68999999999999999998544333 4799999987654 44556677899999
Q ss_pred ccCCcccHHhhcCCCeEEEEcC---CChhHHHHHHHHHHHcCCcEEEE-eecCc-cceEEEEeC--CCCCceeecCCCCC
Q 012280 170 EALRTSNALEILSQYEIVVDAT---DNAPSRYMISDCCVVLGKPLVSG-AALGL-EGQLTVYNY--NGGPCYRCLFPTPP 242 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~---d~~~~r~~i~~~~~~~~~p~i~~-~~~g~-~G~l~v~~~--~~~~C~~C~~~~~~ 242 (467)
+.++.+|+..+.. |+|+-|. |+.++-..|-.+|++.|+..|+. +.+|. .-.+.+..- .++|--+-+....-
T Consensus 95 E~it~dNlhll~g--DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT~GVFGigeEev~v~~~eeA~gP~~~~lldeg~ 172 (217)
T COG4015 95 ENITKDNLHLLKG--DVVVICIAGGDTIPVTAAIINYAKERGIKTISTNGVFGIGEEEVKVCDAEEAKGPAKFLLLDEGG 172 (217)
T ss_pred ccccccchhhhcC--CEEEEEecCCCcchhHHHHHHHHHHcCceEeecCceeecchhheEEeehhhcCccHHHHHHhcCC
Confidence 9999998876543 7776654 77888888888999999988874 33333 222444331 23333222221111
Q ss_pred C-ccccc---cccC-CCcccchHHHHHHHHHHHHHHHHhc
Q 012280 243 P-TTACQ---RCAD-SGVLGVVPGIIGCLQALEAIKVASA 277 (467)
Q Consensus 243 ~-~~~~~---~c~~-~g~~g~~~~v~g~l~A~e~ik~l~g 277 (467)
+ --.+. .-.+ .++.+.+---++--+..|++|+|..
T Consensus 173 ~dHilVgTgk~IRD~ePitPyvLdrva~~mt~e~Lr~L~~ 212 (217)
T COG4015 173 PDHILVGTGKFIRDFEPITPYVLDRVAKRMTIECLRILWS 212 (217)
T ss_pred CceEEEecCccccCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 1 00000 0011 1222233344677788899998864
No 107
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.38 E-value=7.6e-07 Score=85.92 Aligned_cols=92 Identities=21% Similarity=0.343 Sum_probs=72.5
Q ss_pred CCeEEEEecCcccccc-----------cCCCCceecCchhhhcc------chhhHHhhhhhhhhcCCCCCCCCeEEEEcC
Q 012280 364 EAHILVDVRPAHHFRI-----------VSLPNSINIPLSDLESR------LPEISSAMKEKEEHRGSNASSGSNLYVVCR 426 (467)
Q Consensus 364 ~~~~lIDVR~~~ef~~-----------~hIpgSinIP~~~l~~~------~~~l~~~~~~~~~~~~~~~~~~~~IvvvCr 426 (467)
.+...||.|...+|+. +|||||+|+|+.++... .+++...+..+.. +-++|+++-|+
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l------~~~~p~~~sC~ 244 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGL------KLSKPVIVSCG 244 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCc------ccCCCEEEeec
Confidence 3578999999999864 89999999999987654 3445555444331 22589999999
Q ss_pred CChhHHHHHHHHHHcCCCCeEEccccHHHHhhCcCCC
Q 012280 427 RGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDPS 463 (467)
Q Consensus 427 ~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp~ 463 (467)
.|..+...+-.|...| .+++.|+|++..|.- ..|.
T Consensus 245 ~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~-~~Pe 279 (286)
T KOG1529|consen 245 TGISASIIALALERSG-PDAKLYDGSWTEWAL-RAPE 279 (286)
T ss_pred cchhHHHHHHHHHhcC-CCcceecccHHHHhh-cCch
Confidence 9999888888899999 789999999999986 3443
No 108
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.24 E-value=4.5e-06 Score=80.67 Aligned_cols=106 Identities=17% Similarity=0.257 Sum_probs=79.7
Q ss_pred ccCHHHHHHHhccCCCeEEEEec---------CcccccccCCCCceecCchhhhccc----------hhhHHhhhhhhhh
Q 012280 350 RISSKEYKEKVVNGEAHILVDVR---------PAHHFRIVSLPNSINIPLSDLESRL----------PEISSAMKEKEEH 410 (467)
Q Consensus 350 rIs~~e~~~~l~~~~~~~lIDVR---------~~~ef~~~hIpgSinIP~~~l~~~~----------~~l~~~~~~~~~~ 410 (467)
-++++.+.+.+.+ ....|||.- ...+|...|||||+.+.++.+...- +.+.+....
T Consensus 6 iv~~~~v~~~~~~-~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~---- 80 (286)
T KOG1529|consen 6 IVSVKWVMENLGN-HGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASR---- 80 (286)
T ss_pred ccChHHHHHhCcC-CCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHh----
Confidence 4778888888876 457889876 5667888999999999887764321 122222211
Q ss_pred cCCCCCCCCeEEEEcC--CCh-hHHHHHHHHHHcCCCCeEEccccHHHHhhCcCC
Q 012280 411 RGSNASSGSNLYVVCR--RGN-DSQRAVQALHKLGFTSARDIIGGLESWANDVDP 462 (467)
Q Consensus 411 ~~~~~~~~~~IvvvCr--~G~-~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~~dp 462 (467)
..-+++..+|||.+ .|+ .|.+++|.|+-+|+++|..+.||+.+|+..+.|
T Consensus 81 --lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~ 133 (286)
T KOG1529|consen 81 --LGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGP 133 (286)
T ss_pred --cCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCc
Confidence 12245678999999 777 699999999999999999999999999988643
No 109
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=98.14 E-value=8.6e-06 Score=76.11 Aligned_cols=95 Identities=19% Similarity=0.318 Sum_probs=73.6
Q ss_pred CHHHHHhhhcCcEEEEcCCchHHH-HHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCC
Q 012280 84 GVEGQSNLLKSSILVIGAGGLGSP-ALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST 162 (467)
Q Consensus 84 G~~~q~~L~~~~VlvvG~GglGs~-va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~ 162 (467)
+.+.|++|++++|.|+|.|+.|+. ++..|+.+|++.+. .+
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------~~--------------------- 136 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------SE--------------------- 136 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC------------------CC---------------------
Confidence 357799999999999999999998 99999999998654 00
Q ss_pred cEEEEccccCCcccHHhhcCCCeEEEEcCCChhHHH-HHHHHHHHcCCcEEEEeecCccceEEE-EeCCCCCceeec
Q 012280 163 VHIIEHREALRTSNALEILSQYEIVVDATDNAPSRY-MISDCCVVLGKPLVSGAALGLEGQLTV-YNYNGGPCYRCL 237 (467)
Q Consensus 163 v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~-~i~~~~~~~~~p~i~~~~~g~~G~l~v-~~~~~~~C~~C~ 237 (467)
...++|+ |.|....+. .+|+.+.+.++||+.....|..+.+.. +.|+.++|++|+
T Consensus 137 -------------------a~l~vVl-~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~ 193 (193)
T TIGR03882 137 -------------------ADLTVVL-TDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL 193 (193)
T ss_pred -------------------CCEEEEE-eCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence 1234555 555544443 489999999999999887777766655 458999999995
No 110
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.07 E-value=1.3e-05 Score=79.60 Aligned_cols=78 Identities=24% Similarity=0.290 Sum_probs=62.2
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
.++.++|+|+|+||.|..++..|+..|+++|+|+|.+ ..|++.+++.+...++.+.+...
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~- 183 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAG- 183 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEec-
Confidence 3567899999999999999999999999999999865 25889999998887776554332
Q ss_pred ccCCcccHHhhcCCCeEEEEcCC
Q 012280 170 EALRTSNALEILSQYEIVVDATD 192 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d 192 (467)
++..+.+.++|+||+||-
T Consensus 184 -----~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 184 -----SDLAAALAAADGLVHATP 201 (284)
T ss_pred -----cchHhhhCCCCEEEECCc
Confidence 222345678999999974
No 111
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.96 E-value=4.5e-05 Score=78.13 Aligned_cols=99 Identities=25% Similarity=0.374 Sum_probs=72.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
.+|+|+|+|++|+.+|..|++.|.++|++.|... .|+..++.. .-+ ++++...++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-------------------~~~~~i~~~---~~~--~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-------------------EKCARIAEL---IGG--KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-------------------HHHHHHHhh---ccc--cceeEEeccc
Confidence 5899999999999999999999999999987531 122222111 111 4555555555
Q ss_pred c-ccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeec
Q 012280 174 T-SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL 217 (467)
Q Consensus 174 ~-~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~ 217 (467)
. +...++++++|+||+|...+-.. .+-++|.+.|+++++.+..
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYY 101 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccC
Confidence 4 34568899999999998865554 6778999999999997643
No 112
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.94 E-value=2.3e-05 Score=68.97 Aligned_cols=81 Identities=28% Similarity=0.366 Sum_probs=58.7
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
..|++++|+|+|+||.|..++.+|...|+.+|+|++.+ ..|++.+++.+ +...+...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Ccccccee
Confidence 37899999999999999999999999999999998632 23666666666 32223322
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCChhH
Q 012280 169 REALRTSNALEILSQYEIVVDATDNAPS 196 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~~~ 196 (467)
+. +...+.+.++|+||.||.....
T Consensus 65 ~~----~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 65 PL----EDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp EG----GGHCHHHHTESEEEE-SSTTST
T ss_pred eH----HHHHHHHhhCCeEEEecCCCCc
Confidence 21 2233567889999999987643
No 113
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.85 E-value=0.00013 Score=68.80 Aligned_cols=91 Identities=10% Similarity=0.180 Sum_probs=63.7
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
.|++++|+|||.|.+|...++.|...| .++++|+.+. + ..+.+... .-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~---------------~~l~~l~~----~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T---------------ENLVKLVE----EGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C---------------HHHHHHHh----CCCEEEEe
Confidence 588999999999999999999999999 6899986531 0 11111111 11222222
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcE
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPL 211 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~ 211 (467)
..+. ...+.++|+||.||++.+....|...| ..++++
T Consensus 61 ~~~~----~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lv 97 (202)
T PRK06718 61 KEFE----PSDIVDAFLVIAATNDPRVNEQVKEDL-PENALF 97 (202)
T ss_pred cCCC----hhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcE
Confidence 2233 234678999999999999998999889 456644
No 114
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.80 E-value=5.6e-05 Score=73.64 Aligned_cols=101 Identities=18% Similarity=0.225 Sum_probs=73.8
Q ss_pred CCCccCHHHHHHHhccC-----CCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCCeE
Q 012280 347 ADSRISSKEYKEKVVNG-----EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNL 421 (467)
Q Consensus 347 ~~~rIs~~e~~~~l~~~-----~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~I 421 (467)
..+|||++.++.+++.. .+.+|||+|=+-||.+|||-+||||.-.+-.. ..++.... .-..-+
T Consensus 240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~-----~~F~hkpl-------Thp~aL 307 (427)
T COG5105 240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLG-----LLFRHKPL-------THPRAL 307 (427)
T ss_pred chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHHH-----HHHHhccc-------cCceeE
Confidence 35799999999999763 24679999999999999999999997654211 11111111 112568
Q ss_pred EEEcC-CChhHHHHHHHHHHc------------CCCCeEEccccHHHHhhC
Q 012280 422 YVVCR-RGNDSQRAVQALHKL------------GFTSARDIIGGLESWAND 459 (467)
Q Consensus 422 vvvCr-~G~~S~~A~~~L~~~------------G~~~v~~l~GGl~aW~~~ 459 (467)
|+.|. +..++...|..|+.+ =|..|+++.||+++.-..
T Consensus 308 ifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n 358 (427)
T COG5105 308 IFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSN 358 (427)
T ss_pred EEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhc
Confidence 99998 457999999999864 334699999999986543
No 115
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.64 E-value=7.6e-05 Score=62.45 Aligned_cols=88 Identities=20% Similarity=0.316 Sum_probs=63.0
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
.|++++|+|||.|.+|..-++.|..+| .+++++..+. +... ..+++. .
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~~~----------------------------~~i~~~--~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EFSE----------------------------GLIQLI--R 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HHHH----------------------------TSCEEE--E
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hhhh----------------------------hHHHHH--h
Confidence 578999999999999999999999999 6899998764 1000 122221 2
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
..+ .+.+.++|+|+.|+++......|.+.|++.++|+-.+
T Consensus 52 ~~~-----~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 52 REF-----EEDLDGADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp SS------GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred hhH-----HHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 222 2447889999999999999999999999999976543
No 116
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.61 E-value=0.00073 Score=63.79 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=69.7
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
.|++++|+|||.|.+|..-++.|...|. ++++|+.+.- ..+. .+.+. -.+..+.
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l~-~l~~~---~~i~~~~ 59 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SELT-LLAEQ---GGITWLA 59 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHHH-HHHHc---CCEEEEe
Confidence 4788999999999999999999999996 7999987521 0111 11111 1344444
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
..+. ...+.++|+||.|||+.+....+...|...++++-.+
T Consensus 60 ~~~~----~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 60 RCFD----ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred CCCC----HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 4444 2346889999999999988888999999999977443
No 117
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.43 E-value=0.0013 Score=59.38 Aligned_cols=86 Identities=13% Similarity=0.248 Sum_probs=62.4
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
-.|++++|+|||.|.+|...++.|...|. ++++|+.+..+. +.++ +.+ ...
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~~-------------------------l~~l-~~i--~~~ 59 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICKE-------------------------MKEL-PYI--TWK 59 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCHH-------------------------HHhc-cCc--EEE
Confidence 46899999999999999999999999997 688986552110 1111 112 222
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHc
Q 012280 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVL 207 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~ 207 (467)
...+.+ ..+.++|+||.+||+.+....+...|...
T Consensus 60 ~~~~~~----~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 60 QKTFSN----DDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred ecccCh----hcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 333332 34678999999999999999998888774
No 118
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.40 E-value=0.00049 Score=68.24 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=56.4
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
+++++|+|+|+||.|..++..|+..|+.+|+|+|.+. .|++.+++.+....+...+....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~~- 184 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGVD- 184 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEecC-
Confidence 5568999999999999999999999999999997541 37888887776544432222211
Q ss_pred cCCcccHHhhcCCCeEEEEcCC
Q 012280 171 ALRTSNALEILSQYEIVVDATD 192 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d 192 (467)
.....+.+..+|+||+||-
T Consensus 185 ---~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 185 ---ARGIEDVIAAADGVVNATP 203 (283)
T ss_pred ---HhHHHHHHhhcCEEEEcCC
Confidence 1111234467999999984
No 119
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.36 E-value=0.00046 Score=71.46 Aligned_cols=95 Identities=21% Similarity=0.302 Sum_probs=65.0
Q ss_pred EEEEcCCchHHHHHHHHHHhcCC-eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCc
Q 012280 96 ILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (467)
Q Consensus 96 VlvvG~GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~ 174 (467)
|+|+|+|.+|+.++..|++.+-- ++++.|.+. .|++.+++.+ . ...+.....++++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~--~--~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL--L--GDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT----T--TTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc--c--ccceeEEEEecCC
Confidence 79999999999999999998854 999988652 2333333333 2 2344455555553
Q ss_pred -ccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 012280 175 -SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 175 -~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
+...++++++|+||+|...+ ....+-++|.+.|+++|+.
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 34677889999999999876 6667888999999999993
No 120
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.35 E-value=0.00068 Score=67.49 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=58.6
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
+++++|+|+|+||+|..++..|+..|+.+|+|++.+.- ...|++.+++.+.+..+.+.+...+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~d- 186 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVYD- 186 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEec-
Confidence 56788999999999999999999999999999875310 0136666777776655554443332
Q ss_pred cCCc-ccHHhhcCCCeEEEEcCC
Q 012280 171 ALRT-SNALEILSQYEIVVDATD 192 (467)
Q Consensus 171 ~~~~-~~~~~~~~~~DlVi~~~d 192 (467)
++. +...+.+..+|+||.||-
T Consensus 187 -~~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 187 -LNDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred -hhhhhHHHhhhccCCEEEEeCC
Confidence 221 223445667899998873
No 121
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.30 E-value=0.0024 Score=60.86 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=70.3
Q ss_pred HHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEE
Q 012280 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (467)
Q Consensus 88 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~ 167 (467)
...+++.+|+|||.|.++..=+..|..+|. +|++|-.+.-+ . +.+ +.+ ++. ++.
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~------------------e---l~~-l~~-~~~--i~~ 73 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSK------------------E---FLD-LKK-YGN--LKL 73 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCH------------------H---HHH-HHh-CCC--EEE
Confidence 446788999999999999999999999995 69998655210 0 011 111 222 444
Q ss_pred ccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 012280 168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 168 ~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
+...+.+ ..+.++++||.|||+.+....|...|...++++..+
T Consensus 74 ~~r~~~~----~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 74 IKGNYDK----EFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred EeCCCCh----HHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEc
Confidence 4444443 346789999999999999999999999999876654
No 122
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.10 E-value=0.0013 Score=65.18 Aligned_cols=78 Identities=26% Similarity=0.320 Sum_probs=54.8
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
+++++|+|+|+||.|..++..|+..|+.+|+|++.+ ..|++.+++.+.... . +....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~-~--~~~~~- 179 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG-V--ITRLE- 179 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC-c--ceecc-
Confidence 567899999999999999999999999999998643 237777776654321 1 11111
Q ss_pred cCCcccHHhhcCCCeEEEEcCCC
Q 012280 171 ALRTSNALEILSQYEIVVDATDN 193 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d~ 193 (467)
. .+...+.+..+|+||.||-.
T Consensus 180 -~-~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 180 -G-DSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred -c-hhhhhhcccCCCEEEECCCC
Confidence 0 01223455789999999854
No 123
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.03 E-value=0.0019 Score=64.15 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=56.2
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
+++++|+|+|+||.+..++..|+..|+.+|+|++.+. -...|++.+++.+....+ ..+....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~- 183 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTD- 183 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEec-
Confidence 5678999999999999999999999999999987431 013477778777754332 2222221
Q ss_pred cCCc-ccHHhhcCCCeEEEEcCC
Q 012280 171 ALRT-SNALEILSQYEIVVDATD 192 (467)
Q Consensus 171 ~~~~-~~~~~~~~~~DlVi~~~d 192 (467)
+.. ....+.+.++|+||+||-
T Consensus 184 -~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 184 -LADQQAFAEALASADILTNGTK 205 (288)
T ss_pred -hhhhhhhhhhcccCCEEEECCC
Confidence 111 112234567999999873
No 124
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.98 E-value=0.0013 Score=68.00 Aligned_cols=76 Identities=26% Similarity=0.417 Sum_probs=60.0
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
.|++++|+|||+|-.|.-+|++|+..|+.+|+|+ ||+. .|++.+++.+. .++..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT~---------erA~~La~~~~-----~~~~~-- 228 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRTL---------ERAEELAKKLG-----AEAVA-- 228 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCCH---------HHHHHHHHHhC-----Ceeec--
Confidence 4899999999999999999999999999999996 4443 37777777765 22222
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChh
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAP 195 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~ 195 (467)
-++..+.+..+|+||.||..+.
T Consensus 229 ----l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 229 ----LEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred ----HHHHHHhhhhCCEEEEecCCCc
Confidence 2345677889999999998765
No 125
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.92 E-value=0.002 Score=63.79 Aligned_cols=76 Identities=25% Similarity=0.471 Sum_probs=54.3
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
.+++++|+|+|+||+|..++..|...|+.++++++.+ ..|++.+++.+....+ +.+ .
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~ 176 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D 176 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence 3677899999999999999999999999999998653 1356666666543321 121 1
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCC
Q 012280 170 EALRTSNALEILSQYEIVVDATDN 193 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~ 193 (467)
. ...+.+.++|+||+||-.
T Consensus 177 --~---~~~~~~~~~DivInaTp~ 195 (278)
T PRK00258 177 --L---ELQEELADFDLIINATSA 195 (278)
T ss_pred --c---cchhccccCCEEEECCcC
Confidence 1 123456789999999854
No 126
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.88 E-value=0.0026 Score=60.94 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=35.2
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCC--eEEEEeCC
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D 126 (467)
.+++.+|+|+|+|+.|..++..|+..|+. +|.|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 58889999999999999999999999999 99999987
No 127
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.85 E-value=0.0019 Score=67.41 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=55.8
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
.+.+++|+|+|+|+.|..++++|+..|+.+|+|+... ..|++.+++.+. ...+..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~----~~~~~~-- 232 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFR----NASAHY-- 232 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhc----CCeEec--
Confidence 4778999999999999999999999999999997432 125555555432 122111
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChh
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAP 195 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~ 195 (467)
-+...+.+.++|+||.||..+.
T Consensus 233 ----~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 233 ----LSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred ----HHHHHHHhccCCEEEECcCCCC
Confidence 1344577889999999997754
No 128
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0031 Score=62.34 Aligned_cols=144 Identities=20% Similarity=0.321 Sum_probs=83.8
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
++++|+|+|+||.+..++..|+..|+.+|+|++.. ..|++.+++.+.+..+.+.......
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~~- 184 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALAD- 184 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhcccccccccccc-
Confidence 46889999999999999999999999999998542 3478888888887776222111110
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeecCccceEEEEeCCCCCceeecCCCCCCcccccccc
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCA 251 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~v~~~~~~~C~~C~~~~~~~~~~~~~c~ 251 (467)
.+....+|+||+||----.-. . +-+.+... ..+...-++++.|...+.+ -...+.
T Consensus 185 ------~~~~~~~dliINaTp~Gm~~~-------~-~~~~~~~~----------~l~~~~~v~D~vY~P~~Tp-lL~~A~ 239 (283)
T COG0169 185 ------LEGLEEADLLINATPVGMAGP-------E-GDSPVPAE----------LLPKGAIVYDVVYNPLETP-LLREAR 239 (283)
T ss_pred ------cccccccCEEEECCCCCCCCC-------C-CCCCCcHH----------hcCcCCEEEEeccCCCCCH-HHHHHH
Confidence 011116899998875311000 0 00011100 1123344556665332211 112233
Q ss_pred CCCcccchHHH-HHHHHHHHHHHHHhcCCCC
Q 012280 252 DSGVLGVVPGI-IGCLQALEAIKVASAVGEP 281 (467)
Q Consensus 252 ~~g~~g~~~~v-~g~l~A~e~ik~l~g~~~~ 281 (467)
..|.. .+.|+ |-..||.|++++.+|..++
T Consensus 240 ~~G~~-~idGl~Mlv~Qaa~aF~lwtg~~p~ 269 (283)
T COG0169 240 AQGAK-TIDGLGMLVHQAAEAFELWTGVEPP 269 (283)
T ss_pred HcCCe-EECcHHHHHHHHHHHHHHHhCCCCC
Confidence 33433 33333 5556999999999998554
No 129
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.80 E-value=0.0024 Score=58.33 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=47.7
Q ss_pred hhhcCcEEEEcCCc-hHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 90 ~L~~~~VlvvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
.|.+++|+|||+|. +|..++++|...|+ ++++++...
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~----------------------------------------- 78 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT----------------------------------------- 78 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc-----------------------------------------
Confidence 58999999999998 59999999999999 688887420
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCChh
Q 012280 169 REALRTSNALEILSQYEIVVDATDNAP 195 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~~ 195 (467)
++..+.+.++|+||.|+..+.
T Consensus 79 ------~~l~~~l~~aDiVIsat~~~~ 99 (168)
T cd01080 79 ------KNLKEHTKQADIVIVAVGKPG 99 (168)
T ss_pred ------hhHHHHHhhCCEEEEcCCCCc
Confidence 233467788999999998865
No 130
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.78 E-value=0.0033 Score=64.91 Aligned_cols=62 Identities=24% Similarity=0.484 Sum_probs=41.6
Q ss_pred CCCCHHHHhhcccccccCCCCHHHHHhhh-----cCcEEEEc-CCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 64 YGLSPDMIYRYSRHLLLPSFGVEGQSNLL-----KSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~~~G~~~q~~L~-----~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
..|+++.++..-|.++-..+-.+.|..++ ..+|+||| +|.+|..+++.|...|. .++++|.+
T Consensus 64 ~~l~~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 64 LGVPPDLIEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 35777776665555442111122233332 36799998 99999999999999995 58888864
No 131
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.78 E-value=0.0086 Score=51.78 Aligned_cols=95 Identities=25% Similarity=0.377 Sum_probs=61.3
Q ss_pred cEEEEcC-CchHHHHHHHHHH-hcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhC-CCcEEEEcccc
Q 012280 95 SILVIGA-GGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STVHIIEHREA 171 (467)
Q Consensus 95 ~VlvvG~-GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~ln-p~v~v~~~~~~ 171 (467)
||+|+|+ |-.|..+++.+.. .|+.=...+|...=+ +...|+|. +.... ..+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~---------~~g~d~g~---------~~~~~~~~~~------- 56 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA---------KVGKDVGE---------LAGIGPLGVP------- 56 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST---------TTTSBCHH---------HCTSST-SSB-------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc---------cccchhhh---------hhCcCCcccc-------
Confidence 7999999 9999999999998 777666677765300 00123331 10111 1111
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEee
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~ 216 (467)
+ .++..+++..+|+|||.| +++.-...-++|.++++|+|.+.+
T Consensus 57 v-~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTT 99 (124)
T PF01113_consen 57 V-TDDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTT 99 (124)
T ss_dssp E-BS-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred c-chhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECC
Confidence 1 145567777799999999 778777888899999999999854
No 132
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.71 E-value=0.0034 Score=55.88 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=31.7
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+++++|+|+|+|++|..+++.|...|...++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 567899999999999999999999987788888754
No 133
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.68 E-value=0.0054 Score=61.70 Aligned_cols=83 Identities=27% Similarity=0.387 Sum_probs=58.1
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
+.+.+|+|+|+|.+|..++++|...|+.+++++|.+. .|++.+++.+. . .+..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g---~--~~~~~-- 229 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELG---G--NAVPL-- 229 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcC---C--eEEeH--
Confidence 6789999999999999999999999999999987542 24444444432 1 11111
Q ss_pred cCCcccHHhhcCCCeEEEEcCCChhHHHHHHHH
Q 012280 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDC 203 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~ 203 (467)
++..+.+.++|+||.||.++.....+...
T Consensus 230 ----~~~~~~l~~aDvVi~at~~~~~~~~~~~~ 258 (311)
T cd05213 230 ----DELLELLNEADVVISATGAPHYAKIVERA 258 (311)
T ss_pred ----HHHHHHHhcCCEEEECCCCCchHHHHHHH
Confidence 23445677899999999988773334433
No 134
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.65 E-value=0.0076 Score=63.63 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=62.4
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
.+++++|+|+|+|++|..+|+.|+..|. +++++|.+.-+ ..+...+.|.+.+ ++ .+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~------------------~~~~~~~~l~~~~--~~--~~~ 58 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEED------------------QLKEALEELGELG--IE--LVL 58 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchH------------------HHHHHHHHHHhcC--CE--EEe
Confidence 3678999999999999999999999997 69998875310 1122223343332 22 222
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEE
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~ 213 (467)
.... .+.+.++|+||.+++...... +-..|++.|+|++.
T Consensus 59 ~~~~----~~~~~~~d~vv~~~g~~~~~~-~~~~a~~~~i~~~~ 97 (450)
T PRK14106 59 GEYP----EEFLEGVDLVVVSPGVPLDSP-PVVQAHKKGIEVIG 97 (450)
T ss_pred CCcc----hhHhhcCCEEEECCCCCCCCH-HHHHHHHCCCcEEe
Confidence 2222 134577999999887654443 34456777887765
No 135
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.61 E-value=0.0061 Score=63.85 Aligned_cols=76 Identities=24% Similarity=0.353 Sum_probs=53.6
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
.+.+++|+|+|+|.+|..++++|...|+.+++++|.+. .|++.+++.+ .. . .
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~-------------------~ra~~la~~~---g~--~--~-- 228 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY-------------------ERAEDLAKEL---GG--E--A-- 228 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHc---CC--e--E--
Confidence 47789999999999999999999999999999987531 2333333322 11 1 1
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChh
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAP 195 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~ 195 (467)
+..++..+.+.++|+||.||.++.
T Consensus 229 --i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 229 --VKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred --eeHHHHHHHHhhCCEEEECCCCCC
Confidence 111244566778999999997765
No 136
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.036 Score=53.06 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=65.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
++++|+|+|-+|..+|+.|+..|-. +.+||.|.- .+.+.+.. .....++...-+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~----------------------~~~~~~~~---~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEE----------------------RVEEFLAD---ELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHH----------------------HHHHHhhh---hcceEEEEecCC
Confidence 4799999999999999999999986 667776521 11111221 122334444444
Q ss_pred cccH-Hhh-cCCCeEEEEcCCChhHHHHHHHHHHH-cCCcEEEEee
Q 012280 174 TSNA-LEI-LSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVSGAA 216 (467)
Q Consensus 174 ~~~~-~~~-~~~~DlVi~~~d~~~~r~~i~~~~~~-~~~p~i~~~~ 216 (467)
..+. .+. +.++|+++.+|++-.....+...+.+ +|+|-+.+-+
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 3332 222 57899999999998887777777666 8999887743
No 137
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.31 E-value=0.027 Score=53.30 Aligned_cols=95 Identities=19% Similarity=0.172 Sum_probs=66.9
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
.|.+++|+|||.|.+|..=++.|..+|.. ++++-.+. + ......+.+ + .+..+.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~-~--------------------~el~~~~~~-~---~i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF-E--------------------PELKALIEE-G---KIKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc-c--------------------HHHHHHHHh-c---Ccchhh
Confidence 57889999999999999999999999985 77764432 1 111111111 1 133333
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
..+. .+.+..+++||-|||+......+.+.|...++|+-.+
T Consensus 63 ~~~~----~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 63 REFD----AEDLDDAFLVIAATDDEELNERIAKAARERRILVNVV 103 (210)
T ss_pred cccC----hhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceecc
Confidence 3333 2344559999999999999999999999999976544
No 138
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.28 E-value=0.015 Score=54.12 Aligned_cols=84 Identities=20% Similarity=0.255 Sum_probs=56.7
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
.+++++|+|+|+ |++|..+++.|+..|. ++++++.+ ..|++.+++.+.+.. ...+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467889999996 9999999999999884 88887543 235556666554332 2333322
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCChh
Q 012280 169 REALRTSNALEILSQYEIVVDATDNAP 195 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~~ 195 (467)
. ..+.++..+.++++|+||.++....
T Consensus 84 ~-~~~~~~~~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 84 E-TSDDAARAAAIKGADVVFAAGAAGV 109 (194)
T ss_pred e-CCCHHHHHHHHhcCCEEEECCCCCc
Confidence 1 1123444567789999999886544
No 139
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.26 E-value=0.012 Score=59.07 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=52.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCC-eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCC----CcEEEEc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS----TVHIIEH 168 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp----~v~v~~~ 168 (467)
++|.|+|+|++|+.+|..|+..|+. +|.|+|.+ ..|++..+..|....+ .+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 89999864 2345555555554432 222221
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCCh
Q 012280 169 REALRTSNALEILSQYEIVVDATDNA 194 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~ 194 (467)
.. .+.++++|+||.++..+
T Consensus 61 ------~~-~~~l~~aDIVIitag~~ 79 (306)
T cd05291 61 ------GD-YSDCKDADIVVITAGAP 79 (306)
T ss_pred ------CC-HHHhCCCCEEEEccCCC
Confidence 11 23368999999999875
No 140
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.24 E-value=0.035 Score=58.90 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=69.1
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
-.|++++|+|||.|.++..=++.|..+|. ++++|-.+.- ..+.++...-.+..+
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~ 61 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLV 61 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEE
Confidence 36899999999999999999999999997 6888744310 011122112234444
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEE
Q 012280 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~ 213 (467)
...+. .+.+.++++||.|||+.+....|...|...++++-.
T Consensus 62 ~~~~~----~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~ 102 (457)
T PRK10637 62 EGPFD----ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNV 102 (457)
T ss_pred eCCCC----hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEE
Confidence 44444 345688999999999999999999999999986543
No 141
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.21 E-value=0.025 Score=53.16 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=32.3
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.|++++|+|+|.|.+|..++++|...|. ++.++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 5788999999999999999999999997 67788765
No 142
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.12 E-value=0.038 Score=63.72 Aligned_cols=99 Identities=19% Similarity=0.317 Sum_probs=63.3
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcC-C------------eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHH
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGV-G------------RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR 157 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gv-g------------~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~ 157 (467)
-+.++|+|+|+|.+|..++.+|++.+- . .+++.|. -..+++.+++.
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-------------------~~~~a~~la~~-- 625 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-------------------YLKDAKETVEG-- 625 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-------------------CHHHHHHHHHh--
Confidence 457799999999999999999987532 2 1333332 22233333332
Q ss_pred hhCCCcEEEEccccCC-cccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEe
Q 012280 158 SINSTVHIIEHREALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (467)
Q Consensus 158 ~lnp~v~v~~~~~~~~-~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~ 215 (467)
.|+++. ...+++ .+...++++++|+||.|+... .-..+...|.+.|+.++..+
T Consensus 626 --~~~~~~--v~lDv~D~e~L~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 626 --IENAEA--VQLDVSDSESLLKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred --cCCCce--EEeecCCHHHHHHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECc
Confidence 344332 222222 244556668899999998863 34567778888888888764
No 143
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.11 E-value=0.018 Score=52.17 Aligned_cols=123 Identities=22% Similarity=0.234 Sum_probs=72.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC-
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL- 172 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~- 172 (467)
.+|.+||+|..|+.+|++|+.+|.. +++.|.+. +...+.. +.|-..+++.++.+++- ++-+...+..-
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~---~~~~~~~-----~~g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSP---EKAEALA-----EAGAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSH---HHHHHHH-----HTTEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccch---hhhhhhH-----HhhhhhhhhhhhHhhcc--cceEeecccchh
Confidence 5799999999999999999999984 77877442 1111111 12333444555555543 44444333211
Q ss_pred Cc-----ccHHhhcCCCeEEEEcC-CChhHHHHHHHHHHHcCCcEEEEeecCc-----cceEEEEe
Q 012280 173 RT-----SNALEILSQYEIVVDAT-DNAPSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYN 227 (467)
Q Consensus 173 ~~-----~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~l~v~~ 227 (467)
.. ++....+.+=.+|||++ -++.....+.+.+...|+.+|++...|. .|.+.++.
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~ 136 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMV 136 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEE
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEc
Confidence 11 11334445667888865 4456677788889999999999887664 36655554
No 144
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.11 E-value=0.0067 Score=58.98 Aligned_cols=99 Identities=23% Similarity=0.377 Sum_probs=60.5
Q ss_pred CHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhcc-----------------------chhhHHhhhhhh
Q 012280 352 SSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESR-----------------------LPEISSAMKEKE 408 (467)
Q Consensus 352 s~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~-----------------------~~~l~~~~~~~~ 408 (467)
++++|..++.+. ..|||||.+.+|..++.|+++|+|...=.+. ..++...+.+..
T Consensus 4 ~~q~~~~~~~~~--~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~as 81 (334)
T COG2603 4 TEQDYRALLLAD--TPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEAS 81 (334)
T ss_pred hHHHHHHHHhcC--CceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHH
Confidence 355666665543 4799999999999999999999998432111 001111000000
Q ss_pred hhcCCCCCCCCeEEEEcC-CChhHHHHHHHH-HHcCCCCeEEccccHHHHh
Q 012280 409 EHRGSNASSGSNLYVVCR-RGNDSQRAVQAL-HKLGFTSARDIIGGLESWA 457 (467)
Q Consensus 409 ~~~~~~~~~~~~IvvvCr-~G~~S~~A~~~L-~~~G~~~v~~l~GGl~aW~ 457 (467)
+.. .-+.|+-++|. +|.+|...+.+| ...|++ .--+.||..+..
T Consensus 82 --k~f--~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 82 --KAF--QEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred --HHH--HHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 000 01245555585 567999999999 566764 344578887754
No 145
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.09 E-value=0.015 Score=52.42 Aligned_cols=100 Identities=19% Similarity=0.270 Sum_probs=59.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~ 174 (467)
||.|+|+|..|+.+|..|+..| .+++|...|.-....++.+... ....|+.++.. +..++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~n-----------------~~~~~~~~l~~-~i~~t- 60 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQN-----------------PKYLPGIKLPE-NIKAT- 60 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTSE-----------------TTTSTTSBEET-TEEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCCC-----------------CCCCCCcccCc-ccccc-
Confidence 6999999999999999999999 6788876653111111110000 00112222221 11222
Q ss_pred ccHHhhcCCCeEEEEcCCChhHHHHHHHHHH--HcCCcEEEE
Q 012280 175 SNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG 214 (467)
Q Consensus 175 ~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~--~~~~p~i~~ 214 (467)
.+..+.++++|+||.++-+...+..+.++.. +.+.++|+.
T Consensus 61 ~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 61 TDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp SSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred cCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 3455678999999999999988888777654 456666653
No 146
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.07 E-value=0.023 Score=60.51 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=76.3
Q ss_pred hhcccccccCCCCHHHHHhhhcCcEEEEcCCc-hHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhH
Q 012280 72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK 150 (467)
Q Consensus 72 ~ry~Rq~~l~~~G~~~q~~L~~~~VlvvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~ 150 (467)
+.-.|+-.-+++ ..-+.-+.+++|+|-|+|| +||++++.++..+.++|.++|.| ..|-.
T Consensus 230 DLLgR~pV~~d~-~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~-------------------E~~~~ 289 (588)
T COG1086 230 DLLGRPPVALDT-ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRD-------------------EYKLY 289 (588)
T ss_pred HHhCCCCCCCCH-HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCc-------------------hHHHH
Confidence 344555443222 3457789999999999887 89999999999999999999876 35667
Q ss_pred HHHHHHHhhCCCcEEEEccccCCc-ccHHhhcCC--CeEEEEc
Q 012280 151 SAAATCRSINSTVHIIEHREALRT-SNALEILSQ--YEIVVDA 190 (467)
Q Consensus 151 ~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~--~DlVi~~ 190 (467)
.+...|++..|+.++..+-.++-+ +.....+++ .|+|+-+
T Consensus 290 ~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 290 LIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred HHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence 788889999998888888887754 445566666 8898854
No 147
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.98 E-value=0.01 Score=48.41 Aligned_cols=90 Identities=24% Similarity=0.273 Sum_probs=56.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhcC--CeEEEE-eCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 95 SILVIGAGGLGSPALLYLAACGV--GRLGIV-DHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gv--g~i~lv-D~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
||.|||+|.+|..++..|...|+ .++.++ +.+ ..|++ .+.+..+ +.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~-------------------~~~~~----~~~~~~~-~~------- 49 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS-------------------PEKAA----ELAKEYG-VQ------- 49 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS-------------------HHHHH----HHHHHCT-TE-------
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc-------------------HHHHH----HHHHhhc-cc-------
Confidence 68999999999999999999995 345533 221 11222 2223332 11
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHH-HHHcCCcEEEEe
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDC-CVVLGKPLVSGA 215 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~-~~~~~~p~i~~~ 215 (467)
+...+..+.++.+|+||.|+.......++... ....++-+|+..
T Consensus 50 ~~~~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 50 ATADDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp EESEEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred cccCChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence 11223456677899999999887777777766 445677777753
No 148
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.91 E-value=0.011 Score=61.96 Aligned_cols=75 Identities=25% Similarity=0.367 Sum_probs=53.1
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
+.+++|+|+|+|.+|..++++|...|+.+++++|.+. .|++.+++.+ . ..+..
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~---g--~~~~~--- 232 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEF---G--GEAIP--- 232 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHc---C--CcEee---
Confidence 6789999999999999999999999999999986542 2333333332 1 11111
Q ss_pred cCCcccHHhhcCCCeEEEEcCCChh
Q 012280 171 ALRTSNALEILSQYEIVVDATDNAP 195 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d~~~ 195 (467)
.++..+.+.++|+||.||.++.
T Consensus 233 ---~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 233 ---LDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred ---HHHHHHHhccCCEEEECCCCCC
Confidence 1233456678999999997765
No 149
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.91 E-value=0.014 Score=51.68 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=53.3
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcCC-eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCc--EEEEcc
Q 012280 94 SSILVIGA-GGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV--HIIEHR 169 (467)
Q Consensus 94 ~~VlvvG~-GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v--~v~~~~ 169 (467)
.||.|||+ |.+|+.+|..|+..|+. +|.|+|.+. .|++..+.-|....+.. .+....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~-------------------~~~~g~a~Dl~~~~~~~~~~~~i~~ 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE-------------------DKAEGEALDLSHASAPLPSPVRITS 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH-------------------HHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc-------------------ccceeeehhhhhhhhhccccccccc
Confidence 37999999 99999999999999985 599998641 25665555666553332 222222
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCCh
Q 012280 170 EALRTSNALEILSQYEIVVDATDNA 194 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~ 194 (467)
+..+.++++|+||-+...+
T Consensus 62 ------~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 62 ------GDYEALKDADIVVITAGVP 80 (141)
T ss_dssp ------SSGGGGTTESEEEETTSTS
T ss_pred ------ccccccccccEEEEecccc
Confidence 2245678999999887654
No 150
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.90 E-value=0.036 Score=56.05 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=32.4
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++..||.|||+|.+|+.+|..|+..|+..|.|+|-+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~ 39 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV 39 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 566899999999999999999999998779999864
No 151
>PLN00203 glutamyl-tRNA reductase
Probab=95.89 E-value=0.023 Score=60.98 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=54.5
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
|.+++|+|||+|..|..++++|...|+.+|++++.+ ..|++.+++.+ +.+.+....
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~- 319 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKP- 319 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeec-
Confidence 668999999999999999999999999999997643 12444444333 223222211
Q ss_pred cCCcccHHhhcCCCeEEEEcCCChh
Q 012280 171 ALRTSNALEILSQYEIVVDATDNAP 195 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d~~~ 195 (467)
.++..+.+.++|+||.||..+.
T Consensus 320 ---~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 320 ---LDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred ---HhhHHHHHhcCCEEEEccCCCC
Confidence 1234566789999999986654
No 152
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.78 E-value=0.025 Score=56.06 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=31.6
Q ss_pred hhhcCcEEEEcCCc-hHHHHHHHHHHhcCCeEEEEe
Q 012280 90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVD 124 (467)
Q Consensus 90 ~L~~~~VlvvG~Gg-lGs~va~~La~~Gvg~i~lvD 124 (467)
.+++++|+|+|.|+ +|.+++..|...|. ++++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence 57889999999999 99999999999999 899885
No 153
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.78 E-value=0.041 Score=53.40 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=67.7
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHh----cC------CeEEEEeCCccCccccccccccCC-CccCCchhHHHHHHHH
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAAC----GV------GRLGIVDHDVVELNNMHRQVIHTE-PYIGQSKVKSAAATCR 157 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~----Gv------g~i~lvD~D~V~~sNl~Rq~l~~~-~diG~~K~~~~~~~l~ 157 (467)
.+|++.||+++|+|+.|..+++.|..+ |+ ++|.++|.+-+- +.. .++ .+.-+...+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll---------~~~r~~l----~~~~~~~a~ 87 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLL---------TDDREDL----NPHKKPFAR 87 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEE---------BTTTSSH----SHHHHHHHB
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceE---------eccCccC----Chhhhhhhc
Confidence 469999999999999999999999999 99 899999987431 111 111 122233333
Q ss_pred hhCCCcEEEEccccCCcccHHhhcCCC--eEEEEcCCChh--HHHHHHHHHHHcCCcEEEE
Q 012280 158 SINSTVHIIEHREALRTSNALEILSQY--EIVVDATDNAP--SRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 158 ~lnp~v~v~~~~~~~~~~~~~~~~~~~--DlVi~~~d~~~--~r~~i~~~~~~~~~p~i~~ 214 (467)
..++.... .+..+.++.. |++|.++.-+. +..+|...+.....|+|..
T Consensus 88 ~~~~~~~~---------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~ 139 (255)
T PF03949_consen 88 KTNPEKDW---------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFP 139 (255)
T ss_dssp SSSTTT-----------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred cCcccccc---------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEE
Confidence 33432211 3456667666 99998875333 5667777787788899876
No 154
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.77 E-value=0.033 Score=59.36 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=59.0
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
++.++|+|+|+|++|.++|..|...|. +++++|.... .....+.+.|++. ++++..-.
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~--gv~~~~~~- 71 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDD------------------ERHRALAAILEAL--GATVRLGP- 71 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------hhhHHHHHHHHHc--CCEEEECC-
Confidence 567799999999999999999999998 5999985421 1122344455554 34443211
Q ss_pred cCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEE
Q 012280 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~ 213 (467)
... ....+|+||.++.-++...++ ..+...|+|+++
T Consensus 72 ~~~------~~~~~D~Vv~s~Gi~~~~~~~-~~a~~~gi~v~~ 107 (480)
T PRK01438 72 GPT------LPEDTDLVVTSPGWRPDAPLL-AAAADAGIPVWG 107 (480)
T ss_pred Ccc------ccCCCCEEEECCCcCCCCHHH-HHHHHCCCeecc
Confidence 111 235689999887654433322 334556666654
No 155
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.73 E-value=0.045 Score=57.27 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=33.1
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
.+.+++|+|+|+|.+|..+|..|...|+ +++++|.|.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 4689999999999999999999999999 788888653
No 156
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.68 E-value=0.095 Score=51.22 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=57.5
Q ss_pred CcEEEEcC-CchHHHHHHHHHHh-cCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 94 SSILVIGA-GGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 94 ~~VlvvG~-GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
.+|+|+|+ |.+|..++..+... ++.-..++|.+.-. .... ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~---~~~~------------------------~~~~i~----- 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP---LVGQ------------------------GALGVA----- 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc---cccc------------------------CCCCcc-----
Confidence 37999999 99999999988764 55555567655211 0000 000110
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
...+..++++++|+|||++ ++..-..+...|.+.|+|+|.+
T Consensus 50 -~~~dl~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 50 -ITDDLEAVLADADVLIDFT-TPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred -ccCCHHHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 1133445566899999999 4555577888999999999966
No 157
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.62 E-value=0.066 Score=50.99 Aligned_cols=39 Identities=28% Similarity=0.248 Sum_probs=35.6
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
..|+.++|+|.|.|.+|..+|+.|...|...+.+.|.+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 357889999999999999999999999999999999763
No 158
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.60 E-value=0.056 Score=56.38 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=32.1
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+.+.+|+|+|+|.+|..+++.+...|+ ++.++|.|
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3678899999999999999999999999 68888765
No 159
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.59 E-value=0.028 Score=55.90 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
++|.|||+|..|+.+|..|+.+|. .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999998 599998663
No 160
>PRK07574 formate dehydrogenase; Provisional
Probab=95.56 E-value=0.099 Score=54.10 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=59.6
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
..|.+++|.|||.|.+|..+|+.|...|+ ++..+|.... +.+.. ... ++ ..
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~-------------------~~~~~----~~~--g~--~~- 238 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRL-------------------PEEVE----QEL--GL--TY- 238 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCC-------------------chhhH----hhc--Cc--ee-
Confidence 46899999999999999999999999998 4666653210 00000 011 11 11
Q ss_pred cccCCcccHHhhcCCCeEEEEcC-CChhHHHHHHHHHH---HcCCcEEEEe
Q 012280 169 REALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCV---VLGKPLVSGA 215 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~---~~~~p~i~~~ 215 (467)
.....++++.+|+|+.+. .+..++.++++... +.+.-+|+.+
T Consensus 239 -----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 239 -----HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred -----cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence 123557788999887655 66778888875432 3345566653
No 161
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.46 E-value=0.051 Score=54.50 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=28.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+|.|+|+|.+|+.+|..|+..|. +++++|.+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 579999999999999999999996 68888865
No 162
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.43 E-value=0.093 Score=52.72 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=54.5
Q ss_pred HHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEE
Q 012280 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (467)
Q Consensus 88 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~ 167 (467)
...|++++|.|||.|.+|..+|++|..+|+ ++.+.|.. . +.... .... .+++
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~--~------------------~s~~~---A~~~--G~~v-- 62 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRP--G------------------KSFEV---AKAD--GFEV-- 62 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECc--c------------------hhhHH---HHHc--CCEE--
Confidence 467999999999999999999999999999 45555421 0 10000 0111 1211
Q ss_pred ccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHH
Q 012280 168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISD 202 (467)
Q Consensus 168 ~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~ 202 (467)
.+..+.++.+|+|+.+.-+..++.++++
T Consensus 63 -------~sl~Eaak~ADVV~llLPd~~t~~V~~~ 90 (335)
T PRK13403 63 -------MSVSEAVRTAQVVQMLLPDEQQAHVYKA 90 (335)
T ss_pred -------CCHHHHHhcCCEEEEeCCChHHHHHHHH
Confidence 1355778899999988877777777764
No 163
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.43 E-value=0.047 Score=55.07 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=53.3
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCC-eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCc-EEEEcc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV-HIIEHR 169 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v-~v~~~~ 169 (467)
+..||.|||+|.+|+.+|..|+..|+- +|.|+|-+ ..|++..+.-|....|.. .+...
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~-------------------~~~~~g~~~Dl~~~~~~~~~~~i~- 64 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN-------------------KEKAEGDAMDLSHAVPFTSPTKIY- 64 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------CchhHHHHHHHHhhccccCCeEEE-
Confidence 346899999999999999999999985 79998752 345555666666655432 11111
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCC
Q 012280 170 EALRTSNALEILSQYEIVVDATDN 193 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~ 193 (467)
..+ .+.++++|+||-+...
T Consensus 65 ----~~~-~~~~~~adivIitag~ 83 (315)
T PRK00066 65 ----AGD-YSDCKDADLVVITAGA 83 (315)
T ss_pred ----eCC-HHHhCCCCEEEEecCC
Confidence 112 3447999999987655
No 164
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.39 E-value=0.052 Score=54.66 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=60.4
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
..+.+++|.|||.|.+|..+|+.|...|+ ++..+|... . +. +.+. .+
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~-------------~------~~-----------~~~~--~~ 178 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR-------------K------SW-----------PGVQ--SF 178 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC-------------C------CC-----------CCce--ee
Confidence 46889999999999999999999999998 466666421 0 00 0010 11
Q ss_pred cccCCcccHHhhcCCCeEEEEcC-CChhHHHHHHHHHH---HcCCcEEEEe
Q 012280 169 REALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCV---VLGKPLVSGA 215 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~---~~~~p~i~~~ 215 (467)
.......++++++|+|+.+. .+..++.+++.-.. +.+.-+|+.+
T Consensus 179 ---~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 179 ---AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred ---cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 12235667889999988766 56778888885432 2344566653
No 165
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.34 E-value=0.074 Score=53.20 Aligned_cols=74 Identities=26% Similarity=0.341 Sum_probs=52.8
Q ss_pred EEEEcCCchHHHHHHHHHHhcC-CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCC---cEEEEcccc
Q 012280 96 ILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST---VHIIEHREA 171 (467)
Q Consensus 96 VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~---v~v~~~~~~ 171 (467)
|.|||+|.+|+.+|..|+..|+ .+|+|+|.+ +.|++..+.-|....+. +++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~---- 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR---- 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE----
Confidence 5799999999999999999997 579999864 24556666666666543 22221
Q ss_pred CCcccHHhhcCCCeEEEEcCCChh
Q 012280 172 LRTSNALEILSQYEIVVDATDNAP 195 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~ 195 (467)
. .+ .+.++++|+||.+...+.
T Consensus 58 -~-~~-~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 58 -G-GD-YADAADADIVVITAGAPR 78 (300)
T ss_pred -C-CC-HHHhCCCCEEEEcCCCCC
Confidence 1 11 356789999999887643
No 166
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.32 E-value=0.036 Score=55.95 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=32.8
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.++.||.|||+|.+|+.++..|+..|+..|.|+|-+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 467899999999999999999999998889999965
No 167
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.30 E-value=0.06 Score=54.50 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=63.4
Q ss_pred hcCcEEEEcCCchHHHHHHHHH-HhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 92 LKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
..++|+|+|+|+.|...+..|+ ..|+.++.++|.+ ..|++.+++.+.... .+++..+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~-- 183 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVV-- 183 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEe--
Confidence 4578999999999998888875 5689999998654 236677777776533 2333322
Q ss_pred cCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 012280 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
++..+.++++|+|+.||-+.. ..+. .+.+.|..++..
T Consensus 184 ----~~~~~~~~~aDiVi~aT~s~~--p~i~-~~l~~G~hV~~i 220 (325)
T PRK08618 184 ----NSADEAIEEADIIVTVTNAKT--PVFS-EKLKKGVHINAV 220 (325)
T ss_pred ----CCHHHHHhcCCEEEEccCCCC--cchH-HhcCCCcEEEec
Confidence 234566789999999997753 3444 444556544433
No 168
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.28 E-value=0.075 Score=52.88 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=33.1
Q ss_pred CCHHHHHhhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 83 FGVEGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 83 ~G~~~q~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
|+...-..+++++|+|.|+ ||+|..+++.|+..|. ++.+++.+
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~ 49 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRN 49 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4443345678889999985 7899999999999997 57776543
No 169
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.27 E-value=0.033 Score=56.37 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=33.7
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.|.+++|+|||+|-+|.-++++|...|+.+|++....
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4889999999999999999999999999999997443
No 170
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.27 E-value=0.061 Score=54.20 Aligned_cols=78 Identities=23% Similarity=0.204 Sum_probs=56.6
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHH-hcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
+...++|+|+|+|..|..+++.+.. .++.+|.+++.+ ..|++..++.+.+.... +..
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~~--~~~- 179 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGFD--AEV- 179 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCCc--eEE-
Confidence 4456899999999999999987765 688899987542 35777777777654222 222
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCCh
Q 012280 169 REALRTSNALEILSQYEIVVDATDNA 194 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~ 194 (467)
.++..+.++++|+|+.||.+.
T Consensus 180 -----~~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 180 -----VTDLEAAVRQADIISCATLST 200 (314)
T ss_pred -----eCCHHHHHhcCCEEEEeeCCC
Confidence 134456778999999999854
No 171
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.27 E-value=0.1 Score=51.37 Aligned_cols=104 Identities=16% Similarity=0.229 Sum_probs=70.0
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHh----cC------CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHh
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAAC----GV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS 158 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~----Gv------g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~ 158 (467)
.+|++.||+|+|+|+.|..+++.|..+ |+ ++|.++|.+-+=..+ | .++-..|.. +.+.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~----~a~~ 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKP----FARK 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHH----HHhh
Confidence 578899999999999999999999988 99 799999976532111 1 122222222 2222
Q ss_pred hCCCcEEEEccccCCcccHHhhcC--CCeEEEEcCCC--hhHHHHHHHHHHHcCCcEEEE
Q 012280 159 INSTVHIIEHREALRTSNALEILS--QYEIVVDATDN--APSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 159 lnp~v~v~~~~~~~~~~~~~~~~~--~~DlVi~~~d~--~~~r~~i~~~~~~~~~p~i~~ 214 (467)
.++ -...+..+.++ +.|++|.++.- .=++..|...+.....|+|..
T Consensus 89 ~~~----------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 89 DEE----------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred cCc----------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 232 01135667777 78999988752 335667777777778898875
No 172
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.26 E-value=0.055 Score=54.06 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=70.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhh-CCCcEEEEcccc-C
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREA-L 172 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~l-np~v~v~~~~~~-~ 172 (467)
+|.|||+|..|+.++.+|+..|. ++.++|.+.-....+ .+.|..-+....+.+... ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEAL--------AEEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH--------HHCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999996 588888763211111 012322232333444433 356655555443 1
Q ss_pred Cc---ccHHhhcCCCeEEEEcCC-ChhHHHHHHHHHHHcCCcEEEEeecCc
Q 012280 173 RT---SNALEILSQYEIVVDATD-NAPSRYMISDCCVVLGKPLVSGAALGL 219 (467)
Q Consensus 173 ~~---~~~~~~~~~~DlVi~~~d-~~~~r~~i~~~~~~~~~p~i~~~~~g~ 219 (467)
.. +.....++.-++|||++- ++.....+.+.+...|+.++++...|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 11 112233455678998854 444555567788889999998765553
No 173
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.25 E-value=0.044 Score=54.50 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=31.8
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.|.+++|+|+|+|++|..+|+.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678999999999999999999999997 8888765
No 174
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.25 E-value=0.037 Score=54.60 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=31.2
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+++|+|+|+||.+..++..|+..|+.+|+|++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3589999999999999999999999999999754
No 175
>PLN02494 adenosylhomocysteinase
Probab=95.22 E-value=0.018 Score=60.55 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=44.0
Q ss_pred CCCCHHHH-hhcc-cccccCCCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 64 YGLSPDMI-YRYS-RHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 64 ~~l~~~~~-~ry~-Rq~~l~~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
...++..+ .||. ||..+..+=.....-+.+++|+|+|+|.+|..+|+.+...|+ ++.++|.|.
T Consensus 223 ds~~K~~fDn~yGtgqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 223 DSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred ChhhhhhhhccccccccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 34445433 5887 565542111122234788999999999999999999999999 688887663
No 176
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.22 E-value=0.028 Score=45.14 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=34.3
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
..+..++|+|+|+|..|..++.+|...|..++.++|.|
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rd 56 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRD 56 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 34788999999999999999999999988899999883
No 177
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.12 E-value=0.11 Score=50.34 Aligned_cols=105 Identities=12% Similarity=0.139 Sum_probs=68.3
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCC----------eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHh
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVG----------RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS 158 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg----------~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~ 158 (467)
++|++.||+++|+|+.|..+++.|..+|+. +|.++|..-+-..+- .+.-..|... +++
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r--------~~l~~~~~~~-~~~--- 88 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR--------KETCPNEYHL-ARF--- 88 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC--------CccCHHHHHH-HHH---
Confidence 578999999999999999999999999997 999999764321110 1111112111 111
Q ss_pred hCCCcEEEEccccCCcccHHhhcC--CCeEEEEcCCCh--hHHHHHHHHHHHcCCcEEEE
Q 012280 159 INSTVHIIEHREALRTSNALEILS--QYEIVVDATDNA--PSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 159 lnp~v~v~~~~~~~~~~~~~~~~~--~~DlVi~~~d~~--~~r~~i~~~~~~~~~p~i~~ 214 (467)
.+++- ...+..+.++ +.|++|..+..+ -++..|...+.....|+|.+
T Consensus 89 ~~~~~---------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 89 ANPER---------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred cCccc---------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 12110 0135567777 889999876532 25666777777777888876
No 178
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.11 E-value=0.11 Score=51.20 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=29.9
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.++++|+|+|+||+|..++..|+..|. +++++|.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R 148 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANR 148 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 346789999999999999999999996 8888864
No 179
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.06 E-value=0.23 Score=51.21 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=31.8
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+..++|+|+|+|.+|..++..|.+.|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 567889999999999999999999999 69999864
No 180
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.04 E-value=0.1 Score=52.46 Aligned_cols=73 Identities=22% Similarity=0.355 Sum_probs=51.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhcC-CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCC-----CcEEEEc
Q 012280 95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS-----TVHIIEH 168 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp-----~v~v~~~ 168 (467)
||.|||+|.+|+.+|..|+..|+ ++|.|+|-+ +.|++.-+.-|....+ ++++..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~-------------------~~~a~g~a~DL~~~~~~~~~~~~~i~~- 60 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN-------------------EGVAEGEALDFHHATALTYSTNTKIRA- 60 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHHHHHHHhhhccCCCCCEEEEE-
Confidence 69999999999999999999998 679999742 3345555555555333 233332
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCCh
Q 012280 169 REALRTSNALEILSQYEIVVDATDNA 194 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~ 194 (467)
. ..+.++++|+||-+...+
T Consensus 61 -~------~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 61 -G------DYDDCADADIIVITAGPS 79 (307)
T ss_pred -C------CHHHhCCCCEEEECCCCC
Confidence 1 145678999999887653
No 181
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.01 E-value=0.078 Score=53.21 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=56.5
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~ 174 (467)
+|.|+|+|.+|+.++..|+..|. .++++|.+.-....+....... ...+.. ...+.+. ..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~-------~~- 62 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENP-RYLPGI----------KLPDNLR-------AT- 62 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCccc-ccCCCC----------cCCCCeE-------Ee-
Confidence 79999999999999999999997 4788876532111111110000 000000 0001111 11
Q ss_pred ccHHhhcCCCeEEEEcCCChhHHHHHHHHHHH--cCCcEEEE
Q 012280 175 SNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSG 214 (467)
Q Consensus 175 ~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~--~~~p~i~~ 214 (467)
.+..+.++++|+||.|+-+...+..+..+... .+..+|+.
T Consensus 63 ~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 63 TDLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred CCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 22334567899999999887666666554432 34455654
No 182
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=94.97 E-value=0.092 Score=53.18 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=55.7
Q ss_pred cCcEEEEcCCchHHHHHHHHH-HhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 93 KSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
.++|+|+|+|+.|...+..|. ..++.+++|++.+ ..|++..++.+.+..+ +++...
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~--- 185 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAA--- 185 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEe---
Confidence 468999999999999999997 5788999998543 2477777777765332 333322
Q ss_pred CCcccHHhhcCCCeEEEEcCCC
Q 012280 172 LRTSNALEILSQYEIVVDATDN 193 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~ 193 (467)
++..+.++++|+|+.||-+
T Consensus 186 ---~~~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 186 ---TDPRAAMSGADIIVTTTPS 204 (326)
T ss_pred ---CCHHHHhccCCEEEEecCC
Confidence 3456677899999999865
No 183
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.95 E-value=0.069 Score=53.33 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=60.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhh-CCCcEEEEccccCC
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREALR 173 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~l-np~v~v~~~~~~~~ 173 (467)
+|.|||+|..|+.++.+|++.|. ++.++|.+.-...-+.. .|...+....+....+ .+++-+...+....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~--------~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKE--------DRTTGVANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH--------cCCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence 69999999999999999999995 57777765321111111 1111111112212111 34554444444322
Q ss_pred ccc---HHhhcCCCeEEEEcCCCh-hHHHHHHHHHHHcCCcEEEEeecC
Q 012280 174 TSN---ALEILSQYEIVVDATDNA-PSRYMISDCCVVLGKPLVSGAALG 218 (467)
Q Consensus 174 ~~~---~~~~~~~~DlVi~~~d~~-~~r~~i~~~~~~~~~p~i~~~~~g 218 (467)
.+- ....+..=++|||++... .....+...+...++.++.+...|
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG 121 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG 121 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence 211 122334446777775543 333334445556777777765544
No 184
>PRK04148 hypothetical protein; Provisional
Probab=94.94 E-value=0.15 Score=44.74 Aligned_cols=93 Identities=16% Similarity=0.201 Sum_probs=66.6
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
++.+|++||+| .|..+|..|+..|. .++.+|-+.- .++.+++ .. +.+...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~-------------------aV~~a~~----~~----~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK-------------------AVEKAKK----LG----LNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH-------------------HHHHHHH----hC----CeEEECc
Confidence 34689999999 99999999999996 6888876521 2222222 21 2333334
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
+.. ...++.+++|+|-.+--.++...-|-+.+.+.+.+++--
T Consensus 67 lf~-p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 67 LFN-PNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CCC-CCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 332 234667899999998888888888899999999998754
No 185
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=94.92 E-value=0.045 Score=54.25 Aligned_cols=77 Identities=30% Similarity=0.367 Sum_probs=47.2
Q ss_pred EEEEcCCc-hHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCC--cE--EEEccc
Q 012280 96 ILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST--VH--IIEHRE 170 (467)
Q Consensus 96 VlvvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~--v~--v~~~~~ 170 (467)
|+|.|+|| +|+++++.|++.|..+|.++|.|.-.. -.+.+.+++..++ +. +..+..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l-------------------~~l~~~l~~~~~~~~v~~~~~~vig 61 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKL-------------------YELERELRSRFPDPKVRFEIVPVIG 61 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHH-------------------HHHHHHCHHHC--TTCEEEEE--CT
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHH-------------------HHHHHHHhhcccccCcccccCceee
Confidence 78888665 899999999999999999999875433 3444445444433 43 334455
Q ss_pred cCCc-ccHHhhcC--CCeEEEEcC
Q 012280 171 ALRT-SNALEILS--QYEIVVDAT 191 (467)
Q Consensus 171 ~~~~-~~~~~~~~--~~DlVi~~~ 191 (467)
++.+ +....+++ ++|+|+-+.
T Consensus 62 Dvrd~~~l~~~~~~~~pdiVfHaA 85 (293)
T PF02719_consen 62 DVRDKERLNRIFEEYKPDIVFHAA 85 (293)
T ss_dssp SCCHHHHHHHHTT--T-SEEEE--
T ss_pred cccCHHHHHHHHhhcCCCEEEECh
Confidence 6654 33455666 789998664
No 186
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.91 E-value=0.14 Score=51.86 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=51.3
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
..|++++|.|||+|..|..+|++|..+|+ ++.+.+... .|....+ .+. .+.+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~-------------------~~s~~~A---~~~--G~~~--- 64 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREG-------------------SKSWKKA---EAD--GFEV--- 64 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCc-------------------hhhHHHH---HHC--CCee---
Confidence 45788999999999999999999999998 455543221 0111111 111 1211
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCChhHHHHH
Q 012280 169 REALRTSNALEILSQYEIVVDATDNAPSRYMI 200 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i 200 (467)
.+..+.++.+|+|+.++-....+.++
T Consensus 65 ------~s~~eaa~~ADVVvLaVPd~~~~~V~ 90 (330)
T PRK05479 65 ------LTVAEAAKWADVIMILLPDEVQAEVY 90 (330)
T ss_pred ------CCHHHHHhcCCEEEEcCCHHHHHHHH
Confidence 13456778899999998766666666
No 187
>PRK07340 ornithine cyclodeaminase; Validated
Probab=94.88 E-value=0.082 Score=53.02 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=57.3
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHH-hcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
+...++|+|+|+|..|...++.|.. .|+.++.++|.+ ..|++..++.+.+.+. .+.
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~-- 178 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE-- 178 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--
Confidence 4456889999999999999999975 688888887653 3477778887765432 222
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCCh
Q 012280 169 REALRTSNALEILSQYEIVVDATDNA 194 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~ 194 (467)
.++..+.++++|+|+.||-+.
T Consensus 179 -----~~~~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 179 -----PLDGEAIPEAVDLVVTATTSR 199 (304)
T ss_pred -----ECCHHHHhhcCCEEEEccCCC
Confidence 134456778999999998864
No 188
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.83 E-value=0.2 Score=52.99 Aligned_cols=98 Identities=16% Similarity=0.073 Sum_probs=59.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
++|+|+|+|+.|..+|..|.+.|. +++++|..... +.......|.+. .+++..- ....
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~g-~~~~ 58 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP------------------ELLERQQELEQE--GITVKLG-KPLE 58 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch------------------hhHHHHHHHHHc--CCEEEEC-Cccc
Confidence 479999999999999999999997 68888854321 122223345443 3444321 1122
Q ss_pred cccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 012280 174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 174 ~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
.++....+.++|+||-...-+.... +-..+++.++|+++-
T Consensus 59 ~~~~~~~~~~~d~vv~s~gi~~~~~-~~~~a~~~~i~v~~~ 98 (459)
T PRK02705 59 LESFQPWLDQPDLVVVSPGIPWDHP-TLVELRERGIEVIGE 98 (459)
T ss_pred hhhhhHHhhcCCEEEECCCCCCCCH-HHHHHHHcCCcEEEh
Confidence 1222235678999997654443333 333456778888763
No 189
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.82 E-value=0.13 Score=52.53 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=57.2
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc-
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA- 171 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~- 171 (467)
..+|+|+|+|.+|--++..+...|..+|.++|.+. .|.+.|++..- ..+......
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~~g-----~~~~~~~~~~ 224 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEAGG-----ADVVVNPSED 224 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHhCC-----CeEeecCccc
Confidence 33899999999999999999999999999997642 13333332211 111111000
Q ss_pred CCcccHHhhc--CCCeEEEEcCCChhHHHHHHHHHHHcCCc
Q 012280 172 LRTSNALEIL--SQYEIVVDATDNAPSRYMISDCCVVLGKP 210 (467)
Q Consensus 172 ~~~~~~~~~~--~~~DlVi~~~d~~~~r~~i~~~~~~~~~p 210 (467)
.......++- ..+|+||+|+.++.+.....++++..|.-
T Consensus 225 ~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v 265 (350)
T COG1063 225 DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTV 265 (350)
T ss_pred cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 0001111222 35999999999877655555666555553
No 190
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.76 E-value=0.1 Score=51.74 Aligned_cols=32 Identities=34% Similarity=0.408 Sum_probs=29.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+|.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999997 69999865
No 191
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.76 E-value=0.095 Score=52.07 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
++|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 699998754
No 192
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.73 E-value=0.45 Score=43.17 Aligned_cols=88 Identities=25% Similarity=0.281 Sum_probs=56.1
Q ss_pred EEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCc
Q 012280 96 ILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (467)
Q Consensus 96 VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~ 174 (467)
|+|+|+ |.+|..+++.|...| .+++.+= |. ..|.+. .+.+++...+. .+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R~---------~~~~~~--------~~~~~~~~~d~-~d~ 51 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------RS---------PSKAED--------SPGVEIIQGDL-FDP 51 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------SS---------GGGHHH--------CTTEEEEESCT-TCH
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------cC---------chhccc--------ccccccceeee-hhh
Confidence 799998 779999999999999 4566532 11 113222 55555443332 233
Q ss_pred ccHHhhcCCCeEEEEcCCChh----HHHHHHHHHHHcCCcEE
Q 012280 175 SNALEILSQYEIVVDATDNAP----SRYMISDCCVVLGKPLV 212 (467)
Q Consensus 175 ~~~~~~~~~~DlVi~~~d~~~----~r~~i~~~~~~~~~p~i 212 (467)
+...+.++++|.||.+..... .-..+-++|...+++-+
T Consensus 52 ~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 93 (183)
T PF13460_consen 52 DSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRV 93 (183)
T ss_dssp HHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred hhhhhhhhhcchhhhhhhhhcccccccccccccccccccccc
Confidence 556777889999999885322 22235566777777643
No 193
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.73 E-value=0.14 Score=53.27 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=32.3
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
+.+++|+|+|+|.+|..+|+.|...|. ++.++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 689999999999999999999999998 588888653
No 194
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.71 E-value=0.36 Score=50.85 Aligned_cols=94 Identities=12% Similarity=0.139 Sum_probs=61.4
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
+...+|+|+|+|.+|..+++.|...|. .+++||.|. .+++ .+++..+++. .+..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~-------------------~~~~----~~~~~~~~~~--~i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDP-------------------ERAE----ELAEELPNTL--VLHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHHH----HHHHHCCCCe--EEEC
Confidence 446889999999999999999999888 478888652 1122 2222222332 2223
Q ss_pred cCCcccH--HhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCc
Q 012280 171 ALRTSNA--LEILSQYEIVVDATDNAPSRYMISDCCVVLGKP 210 (467)
Q Consensus 171 ~~~~~~~--~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p 210 (467)
+.+.... ...+.++|.||.++++......+...++..+.+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK 324 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC
Confidence 3332222 224578999999998877777776677776654
No 195
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.71 E-value=0.015 Score=53.72 Aligned_cols=91 Identities=19% Similarity=0.294 Sum_probs=50.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCcccccccc---ccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQV---IHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~---l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
+|.|||+|..|..+|..++++|. +++++|.+.-.....-..+ +-...+-|....+.+...+..+.. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~----~----- 70 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF----T----- 70 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE----E-----
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc----c-----
Confidence 69999999999999999999997 5999998654322221111 001112233333344444443321 1
Q ss_pred CCcccHHhhcCCCeEEEEcC-CChhHHHH
Q 012280 172 LRTSNALEILSQYEIVVDAT-DNAPSRYM 199 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~-d~~~~r~~ 199 (467)
.+..+.. ++|+||.|+ .+.+.+..
T Consensus 71 ---~dl~~~~-~adlViEai~E~l~~K~~ 95 (180)
T PF02737_consen 71 ---TDLEEAV-DADLVIEAIPEDLELKQE 95 (180)
T ss_dssp ---SSGGGGC-TESEEEE-S-SSHHHHHH
T ss_pred ---cCHHHHh-hhheehhhccccHHHHHH
Confidence 2223444 899999987 34455443
No 196
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.68 E-value=0.31 Score=48.31 Aligned_cols=95 Identities=19% Similarity=0.291 Sum_probs=55.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~ 174 (467)
+|+|+|+|.+|+.+|..|+.+|. +++++|.+.-....+.++ |. +.+ +-+.. ......
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~--------g~-~~~-----------~~~~~-~~~~~~- 58 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNEN--------GL-RLE-----------DGEIT-VPVLAA- 58 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHc--------CC-ccc-----------CCcee-ecccCC-
Confidence 69999999999999999999994 689998642111111111 10 000 00111 000111
Q ss_pred ccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcC--CcEEE
Q 012280 175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVLG--KPLVS 213 (467)
Q Consensus 175 ~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~--~p~i~ 213 (467)
.+..+. .++|+||.|+-.......+..+....+ ..+|+
T Consensus 59 ~~~~~~-~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 59 DDPAEL-GPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred CChhHc-CCCCEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 112233 789999999998887777776654433 34554
No 197
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.68 E-value=0.66 Score=38.87 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=59.7
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCcc
Q 012280 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTS 175 (467)
Q Consensus 96 VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~ 175 (467)
|+|+|.|.+|-.+++.|...| -.+.++|.|.- + .+.+++.. +..+....+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc----cccccccchhh
Confidence 789999999999999999944 57999998731 1 22223322 23444555543
Q ss_pred cHHh--hcCCCeEEEEcCCChhHHHHHHHHHHH-cCCcEEEE
Q 012280 176 NALE--ILSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVSG 214 (467)
Q Consensus 176 ~~~~--~~~~~DlVi~~~d~~~~r~~i~~~~~~-~~~p~i~~ 214 (467)
.... -+++++.||.++++......+...+++ .+..-|.+
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 3322 347899999999998888888878877 34344433
No 198
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=94.65 E-value=0.18 Score=42.60 Aligned_cols=77 Identities=14% Similarity=0.317 Sum_probs=39.4
Q ss_pred CccCHHHHHHHhccCCCeEEEEecCcccccccCCCC--------------ceecCchh--hhc-cchhhHHhhhhhhhhc
Q 012280 349 SRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPN--------------SINIPLSD--LES-RLPEISSAMKEKEEHR 411 (467)
Q Consensus 349 ~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpg--------------SinIP~~~--l~~-~~~~l~~~~~~~~~~~ 411 (467)
..|+++++.++.+.|= -.||+.||..|-. +.|. -++||+.. +.. .+..+.+.+...
T Consensus 13 ~Q~~~~d~~~la~~Gf-ktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~---- 85 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGF-KTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESL---- 85 (110)
T ss_dssp CS--HHHHHHHHHCT---EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTT----
T ss_pred CCCCHHHHHHHHHCCC-cEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhC----
Confidence 3588999999888763 2699999876521 1221 25677653 211 133333333322
Q ss_pred CCCCCCCCeEEEEcCCChhHHHHHHHH
Q 012280 412 GSNASSGSNLYVVCRRGNDSQRAVQAL 438 (467)
Q Consensus 412 ~~~~~~~~~IvvvCr~G~~S~~A~~~L 438 (467)
+.||+++|++|+||...+..-
T Consensus 86 ------~~Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 86 ------PKPVLAHCRSGTRASALWALA 106 (110)
T ss_dssp ------TTSEEEE-SCSHHHHHHHHHH
T ss_pred ------CCCEEEECCCChhHHHHHHHH
Confidence 379999999999987666543
No 199
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.64 E-value=0.1 Score=52.11 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=65.9
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhh-CCCcEEEEcccc-C
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREA-L 172 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~l-np~v~v~~~~~~-~ 172 (467)
+|.|||+|.+|..++.+|+..|. .++++|.+.-. .. .+ .+.|...+....+.+++. ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~---~~--~~---~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEA---VD--VA---GKLGITARHSLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHH---HH--HH---HHCCCeecCCHHHHHHhCCCCCEEEEEecCchH
Confidence 69999999999999999999996 57788765311 10 01 112333333333333332 244544444433 1
Q ss_pred Cccc---HHhhcCCCeEEEEcC-CChhHHHHHHHHHHHcCCcEEEEeecCc
Q 012280 173 RTSN---ALEILSQYEIVVDAT-DNAPSRYMISDCCVVLGKPLVSGAALGL 219 (467)
Q Consensus 173 ~~~~---~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~~~~p~i~~~~~g~ 219 (467)
..+- ....+++=.+|||++ -++..-..+.+.+...++.++++...|.
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~ 123 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG 123 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCC
Confidence 1111 122233446888874 3454555566667778888888655544
No 200
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.64 E-value=0.13 Score=52.90 Aligned_cols=101 Identities=12% Similarity=0.092 Sum_probs=60.8
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcC------CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHh--hC----
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS--IN---- 160 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gv------g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~--ln---- 160 (467)
..+|.|+|+|+.|+.+|..|+..|. .++.|...|..- -++ ...+.+++ .|
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~--------------~~~----~~~~~in~~~~N~~yl 72 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV--------------EGE----KLSDIINTKHENVKYL 72 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc--------------cch----HHHHHHHhcCCCcccC
Confidence 4589999999999999999999884 366666444210 011 11222221 11
Q ss_pred CCcEEEEccccCC-cccHHhhcCCCeEEEEcCCChhHHHHHHHHHH----HcCCcEEEE
Q 012280 161 STVHIIEHREALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCV----VLGKPLVSG 214 (467)
Q Consensus 161 p~v~v~~~~~~~~-~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~----~~~~p~i~~ 214 (467)
|+++ .+..+. ..+..+.++++|+||.++-+...+..+..... ..+.++|++
T Consensus 73 p~~~---Lp~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~ 128 (365)
T PTZ00345 73 PGIK---LPDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISL 128 (365)
T ss_pred CCCc---CCCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEE
Confidence 2221 112221 12344677899999999998888888777642 223456665
No 201
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.61 E-value=0.11 Score=52.43 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=29.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
++|.|||+|.+|+.+|..++.+|.. ++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence 5799999999999999999999985 88888653
No 202
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.54 E-value=0.068 Score=53.52 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=30.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.||.|||+|.+|+.+|..|+..|.+++.|+|-+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 589999999999999999999987699999873
No 203
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=94.52 E-value=0.1 Score=49.54 Aligned_cols=80 Identities=28% Similarity=0.388 Sum_probs=60.6
Q ss_pred hhcCcEEEE-cCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 91 LLKSSILVI-GAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 91 L~~~~Vlvv-G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
+.+++++++ |+||+|-.+++.|..-|+..+.|.|.- .| -.+...|+++||.+++..+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~----En-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSE----EN-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhh----hC-----------------HHHHHHHhccCCCceEEEEE
Confidence 567888888 599999999999999999988876532 11 34667899999999999888
Q ss_pred ccCCcc--------cHHhhcCCCeEEEEcC
Q 012280 170 EALRTS--------NALEILSQYEIVVDAT 191 (467)
Q Consensus 170 ~~~~~~--------~~~~~~~~~DlVi~~~ 191 (467)
.+++.. ....-+...|++|...
T Consensus 62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 62 CDVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred eccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 888751 1223446788988643
No 204
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.44 E-value=0.044 Score=55.61 Aligned_cols=37 Identities=38% Similarity=0.630 Sum_probs=32.2
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHH-hcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAA-CGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~-~Gvg~i~lvD~D 126 (467)
.|++++|+|+|+ |.+|+.+++.|+. .|+.++.+++.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~ 190 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ 190 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence 588899999999 6899999999985 589999998653
No 205
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.44 E-value=0.072 Score=53.37 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=31.7
Q ss_pred HHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 88 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
...|.+++|.|+|.|.+|.++|+.|...|+ ++..+|.
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r 153 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTR 153 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 357999999999999999999998887788 5777765
No 206
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.43 E-value=0.19 Score=49.09 Aligned_cols=89 Identities=25% Similarity=0.205 Sum_probs=54.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcC--CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGV--GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gv--g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
.+|.|||+|.+|+.++..|...|. ..+.++|.+. .+++.+++.+ .+.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~~~~~~-----g~~~------ 52 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAALAEEY-----GVRA------ 52 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHHHHHhc-----CCee------
Confidence 479999999999999999999984 3566655321 1222222211 1111
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
. .+..+.+..+|+||.|+-....+..+.++....+..+|+.
T Consensus 53 -~-~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~~~~vvs~ 93 (267)
T PRK11880 53 -A-TDNQEAAQEADVVVLAVKPQVMEEVLSELKGQLDKLVVSI 93 (267)
T ss_pred -c-CChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEe
Confidence 1 1223456789999999976666766666543334455554
No 207
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=94.39 E-value=0.15 Score=43.69 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=53.6
Q ss_pred cEEEEc-CCchHHHHHHHHHHhc-CCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCC----CcEEEEc
Q 012280 95 SILVIG-AGGLGSPALLYLAACG-VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS----TVHIIEH 168 (467)
Q Consensus 95 ~VlvvG-~GglGs~va~~La~~G-vg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp----~v~v~~~ 168 (467)
||.||| .|-+|.++++.|...= +.-+.++... ...|+. +....| ...+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~---------------~~~g~~--------~~~~~~~~~~~~~~~~~ 57 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSS---------------RSAGKP--------LSEVFPHPKGFEDLSVE 57 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEEST---------------TTTTSB--------HHHTTGGGTTTEEEBEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeec---------------cccCCe--------eehhccccccccceeEe
Confidence 699999 6668999999998832 2223333322 124442 122222 1111111
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEe
Q 012280 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~ 215 (467)
. ...+.+.+.|+||.|+++...+.+...+ .+.|+++|+.+
T Consensus 58 ~------~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s 97 (121)
T PF01118_consen 58 D------ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLS 97 (121)
T ss_dssp E------TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESS
T ss_pred e------cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCC
Confidence 1 1233458999999999987776655554 78899999854
No 208
>PRK09242 tropinone reductase; Provisional
Probab=94.39 E-value=0.22 Score=47.87 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=45.3
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
.+++++++|+|+ |++|..+++.|+..|. ++.+++.+ ..+.+.+.+.+...+|..++..+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 367789999986 6799999999999997 57777643 12344556666666666666665
Q ss_pred cccCC
Q 012280 169 REALR 173 (467)
Q Consensus 169 ~~~~~ 173 (467)
..+++
T Consensus 66 ~~Dl~ 70 (257)
T PRK09242 66 AADVS 70 (257)
T ss_pred ECCCC
Confidence 55554
No 209
>PRK07062 short chain dehydrogenase; Provisional
Probab=94.35 E-value=0.23 Score=48.07 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=42.3
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
.++++.++|.|+ ||+|..+++.|+..|.. +.+++.+. .|.+.+.+.+.+..+..++..+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 64 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE-------------------ERLASAEARLREKFPGARLLAA 64 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEE
Confidence 367789999997 56999999999999984 77766431 2444555666665555444444
Q ss_pred cccC
Q 012280 169 REAL 172 (467)
Q Consensus 169 ~~~~ 172 (467)
..++
T Consensus 65 ~~D~ 68 (265)
T PRK07062 65 RCDV 68 (265)
T ss_pred EecC
Confidence 3333
No 210
>PLN02602 lactate dehydrogenase
Probab=94.26 E-value=0.11 Score=53.21 Aligned_cols=75 Identities=12% Similarity=0.277 Sum_probs=51.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcC-CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCC---CcEEEEcc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS---TVHIIEHR 169 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp---~v~v~~~~ 169 (467)
.||.|||+|.+|+.+|..|+..|+ .+|.|+|-+ +.|++..+.-|....+ .++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN-------------------PDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------CchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999998 579999752 2344455555554433 2333321
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCCh
Q 012280 170 EALRTSNALEILSQYEIVVDATDNA 194 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~ 194 (467)
...+.++++|+||-+...+
T Consensus 98 ------~dy~~~~daDiVVitAG~~ 116 (350)
T PLN02602 98 ------TDYAVTAGSDLCIVTAGAR 116 (350)
T ss_pred ------CCHHHhCCCCEEEECCCCC
Confidence 1134478999999886654
No 211
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.25 E-value=0.19 Score=50.28 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=28.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++|.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 579999999999999999999997 68888864
No 212
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.23 E-value=0.1 Score=52.47 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=51.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCC-eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCC---cEEEEc
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST---VHIIEH 168 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~---v~v~~~ 168 (467)
..||.|||+|.+|+.+|..|+..|.. +|.|+|-. ..|++..+.-|....|. ..|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 45899999999999999999999984 69999753 23455555555555432 223221
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCC
Q 012280 169 REALRTSNALEILSQYEIVVDATDN 193 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~ 193 (467)
.+ .+.++++|+||-+...
T Consensus 64 ------~d-y~~~~~adivvitaG~ 81 (312)
T cd05293 64 ------KD-YSVTANSKVVIVTAGA 81 (312)
T ss_pred ------CC-HHHhCCCCEEEECCCC
Confidence 11 2347999999987664
No 213
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.23 E-value=0.077 Score=41.77 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.9
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
||+|||.|-+|+++|..|+..|. +++|++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEecc
Confidence 68999999999999999999996 78888754
No 214
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=94.22 E-value=0.22 Score=50.75 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=60.3
Q ss_pred cEEEEcCCchHHHHHHHHHHhcC-------CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEE-
Q 012280 95 SILVIGAGGLGSPALLYLAACGV-------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII- 166 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gv-------g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~- 166 (467)
+|.|+|+|..|+.+|..|+..|. .++++...+. ++- -+...+.+++...+.++-
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~---~~~~~~~in~~~~n~~ylp 62 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIE---GRNLTEIINTTHENVKYLP 62 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccC---CHHHHHHHHhcCCCccccC
Confidence 68999999999999999999883 4666665421 110 001222222221111110
Q ss_pred --EccccCC-cccHHhhcCCCeEEEEcCCChhHHHHHHHHHH--HcCCcEEEE
Q 012280 167 --EHREALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG 214 (467)
Q Consensus 167 --~~~~~~~-~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~--~~~~p~i~~ 214 (467)
..+..+. ..+..+.++++|+||.++-+...+..+..+.. +.+.++|++
T Consensus 63 gi~Lp~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~ 115 (342)
T TIGR03376 63 GIKLPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC 115 (342)
T ss_pred CCcCCCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE
Confidence 0111111 12445677899999999998888887776542 345677775
No 215
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.20 E-value=0.037 Score=49.03 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=50.2
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCcc
Q 012280 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTS 175 (467)
Q Consensus 96 VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~ 175 (467)
|+|+|+|++|+.+|-.|..+|.. +++++... ....+.++-+.-...-|.. .+. .......
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~~~~~~~~g~~~~~~~~~~----------------~~~-~~~~~~~- 60 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-RLEAIKEQGLTITGPDGDE----------------TVQ-PPIVISA- 60 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-HHHHHHHHCEEEEETTEEE----------------EEE-EEEEESS-
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-cHHhhhheeEEEEecccce----------------ecc-cccccCc-
Confidence 78999999999999999998775 77776543 1111222111100000110 000 0000110
Q ss_pred cHHhhcCCCeEEEEcCCChhHHHHHHHHH
Q 012280 176 NALEILSQYEIVVDATDNAPSRYMISDCC 204 (467)
Q Consensus 176 ~~~~~~~~~DlVi~~~d~~~~r~~i~~~~ 204 (467)
.......+|+||.|+=+......+..+.
T Consensus 61 -~~~~~~~~D~viv~vKa~~~~~~l~~l~ 88 (151)
T PF02558_consen 61 -PSADAGPYDLVIVAVKAYQLEQALQSLK 88 (151)
T ss_dssp -HGHHHSTESEEEE-SSGGGHHHHHHHHC
T ss_pred -chhccCCCcEEEEEecccchHHHHHHHh
Confidence 1234578999999998888888877754
No 216
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.16 E-value=0.11 Score=55.16 Aligned_cols=121 Identities=15% Similarity=0.165 Sum_probs=71.9
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCC--chhHHHHHHHHhh-CCCcEEEE-cc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQ--SKVKSAAATCRSI-NSTVHIIE-HR 169 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~--~K~~~~~~~l~~l-np~v~v~~-~~ 169 (467)
++|.|||+|..|+.+|.+|+..|. ++++.|.+.=....+..... .-|. .-+...++.+..+ .|++-+.. .+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~----~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAK----EGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhh----hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 68898865422111111000 0011 0133444555544 35544433 22
Q ss_pred ccCCc---ccHHhhcCCCeEEEEcCCC-hhHHHHHHHHHHHcCCcEEEEeecCc
Q 012280 170 EALRT---SNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL 219 (467)
Q Consensus 170 ~~~~~---~~~~~~~~~~DlVi~~~d~-~~~r~~i~~~~~~~~~p~i~~~~~g~ 219 (467)
..... +.....+..=|+|||++-. +..-......+...|+.++.+.+.|-
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 22221 2233445667999998765 34333445677788999999876653
No 217
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=94.09 E-value=0.42 Score=46.94 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=53.6
Q ss_pred CcEEEEcCCchHHHHHHHHHHhc--CCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 94 SSILVIGAGGLGSPALLYLAACG--VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~G--vg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
.+|.|||+|.+|..++..|...+ +.-+.++|.+ ..|++.+++ ... +. .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~-------------------~~~a~~~a~---~~~--~~--~~--- 52 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN-------------------LEKAENLAS---KTG--AK--AC--- 52 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC-------------------HHHHHHHHH---hcC--Ce--eE---
Confidence 37999999999999999998764 3334455443 123332222 111 11 11
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEe
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~ 215 (467)
.+..+++.++|+|+.|+..... ..+-..+.+.|+.++..+
T Consensus 53 ---~~~~ell~~~DvVvi~a~~~~~-~~~~~~al~~Gk~Vvv~s 92 (265)
T PRK13304 53 ---LSIDELVEDVDLVVECASVNAV-EEVVPKSLENGKDVIIMS 92 (265)
T ss_pred ---CCHHHHhcCCCEEEEcCChHHH-HHHHHHHHHcCCCEEEEc
Confidence 2344555789999999864333 344445567788877643
No 218
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.05 E-value=0.14 Score=51.69 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=30.5
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcC-CeEEEEeC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGV-GRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~ 125 (467)
++..||+|+|+ |.+|+.++..|+..|. .+|.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 55679999999 9999999999997776 47999986
No 219
>PRK05875 short chain dehydrogenase; Provisional
Probab=94.01 E-value=0.18 Score=49.09 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=30.4
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~ 40 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRN 40 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 467899999997 7899999999999998 57777643
No 220
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.00 E-value=0.052 Score=53.64 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=29.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++|.|||+|-+|+.+|..|+..|. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 479999999999999999999998 68888865
No 221
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.00 E-value=0.32 Score=49.40 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=59.3
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
..|++++|.|||+|.+|..+|+.|...|. ++..+|...- +.. .. ++
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~~---~~-------~~---- 187 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KDL---DF-------LT---- 187 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hhh---hh-------hh----
Confidence 36899999999999999999999999987 5777775320 000 00 00
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCCh-hHHHHHHHHHHH---cCCcEEEEe
Q 012280 169 REALRTSNALEILSQYEIVVDATDNA-PSRYMISDCCVV---LGKPLVSGA 215 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~-~~r~~i~~~~~~---~~~p~i~~~ 215 (467)
. ..+..+.++.+|+|+.+.-.. .++.++++.... .+..+|+.+
T Consensus 188 ---~-~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 188 ---Y-KDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred ---c-cCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 1 123557788999998877654 467777654332 355566654
No 222
>PRK05854 short chain dehydrogenase; Provisional
Probab=93.95 E-value=0.27 Score=49.24 Aligned_cols=63 Identities=25% Similarity=0.236 Sum_probs=42.0
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
|++++|+|.|+ +|+|.++|+.|++.|. ++.+++.+. .|.+.+.+.|.+.++..++..+.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~~ 71 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR-------------------AKGEAAVAAIRTAVPDAKLSLRA 71 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEEEE
Confidence 56788999985 5699999999999996 677765431 24555555565555554444444
Q ss_pred ccCC
Q 012280 170 EALR 173 (467)
Q Consensus 170 ~~~~ 173 (467)
.+++
T Consensus 72 ~Dl~ 75 (313)
T PRK05854 72 LDLS 75 (313)
T ss_pred ecCC
Confidence 4443
No 223
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.93 E-value=0.13 Score=50.83 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=55.5
Q ss_pred hhhcCcEEEEcCCc-hHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 90 ~L~~~~VlvvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
.|++++|+|||.|. +|.+++..|...|. ++++++..+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t----------------------------------------- 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS----------------------------------------- 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc-----------------------------------------
Confidence 68999999999999 99999999999985 577765210
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeec
Q 012280 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL 217 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~ 217 (467)
.+..+.++.+|+||.++..+.. +..--.+.|.-+|+.+..
T Consensus 193 ------~~l~~~~~~ADIVIsAvg~p~~---i~~~~vk~gavVIDvGi~ 232 (286)
T PRK14175 193 ------KDMASYLKDADVIVSAVGKPGL---VTKDVVKEGAVIIDVGNT 232 (286)
T ss_pred ------hhHHHHHhhCCEEEECCCCCcc---cCHHHcCCCcEEEEcCCC
Confidence 1344667889999999987642 222223456666776543
No 224
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.93 E-value=0.31 Score=51.95 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=33.3
Q ss_pred HHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 86 EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 86 ~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
+.-..+..++|+|+|+|+.|..++..|...|. .+++.|.
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~ 46 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD 46 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence 34445677899999999999999999999998 7888874
No 225
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.92 E-value=0.54 Score=45.13 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=54.5
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcC---CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gv---g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
+..||.|||+|.+|..++..|...|. ..+.+++.. ...|++.+++ +. .+. ..
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~---~~--~~~--~~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQLQA---RY--NVS--TT 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHHHHH---Hc--CcE--Ee
Confidence 45689999999999999999998873 223333211 0112222222 11 122 11
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHH-cCCcEEEE
Q 012280 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVSG 214 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~-~~~p~i~~ 214 (467)
.+..+.++++|+||.|+-....+..+.+.... .+..+|+.
T Consensus 58 ------~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~~~~vis~ 98 (245)
T PRK07634 58 ------TDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTV 98 (245)
T ss_pred ------CChHHHHhcCCEEEEecCHHHHHHHHHHHHhhccCCEEEEE
Confidence 12345567899999999887777766665421 24445554
No 226
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.90 E-value=0.18 Score=50.41 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=29.9
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+..+|+|+|+|++|..++..+...|+..+.++|.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 35668999999999999998888899988887754
No 227
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.90 E-value=0.18 Score=50.93 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=28.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+|.|+|+|.+|+.++..|++.|. +++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 479999999999999999999986 48888764
No 228
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.90 E-value=0.26 Score=52.24 Aligned_cols=97 Identities=13% Similarity=0.201 Sum_probs=59.0
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
.-+.+++|+|+|.|..|..+|+.|...|. .+++.|.+.-+ +.....+.|.+. .+.+..
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~- 67 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEE------------------ELGEVSNELKEL--GVKLVL- 67 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCc------------------cchHHHHHHHhC--CCEEEe-
Confidence 34567899999999999999999999997 68888854311 000111224333 233321
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEE
Q 012280 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~ 213 (467)
.... .+.+.++|+||.+..-+.... +-..+++.++|+++
T Consensus 68 -~~~~----~~~~~~~dlVV~Spgi~~~~p-~~~~a~~~~i~i~s 106 (458)
T PRK01710 68 -GENY----LDKLDGFDVIFKTPSMRIDSP-ELVKAKEEGAYITS 106 (458)
T ss_pred -CCCC----hHHhccCCEEEECCCCCCCch-HHHHHHHcCCcEEe
Confidence 1111 233477999997754443333 33345678888775
No 229
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.89 E-value=0.32 Score=51.33 Aligned_cols=94 Identities=16% Similarity=0.232 Sum_probs=57.3
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
+.+++|+|+|.|+.|..+|+.|+..|. ++++.|.+... + ....|++....+.+. ..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~------------------~---~~~~l~~~~~gi~~~--~g 58 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKP------------------E---RVAQIGKMFDGLVFY--TG 58 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCc------------------h---hHHHHhhccCCcEEE--eC
Confidence 457899999999999999999999997 58888854321 0 012243322334432 22
Q ss_pred cCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEE
Q 012280 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~ 213 (467)
... ...+.++|+||-...-++.... -..+++.++|+++
T Consensus 59 ~~~----~~~~~~~d~vv~spgi~~~~p~-~~~a~~~~i~v~~ 96 (445)
T PRK04308 59 RLK----DALDNGFDILALSPGISERQPD-IEAFKQNGGRVLG 96 (445)
T ss_pred CCC----HHHHhCCCEEEECCCCCCCCHH-HHHHHHcCCcEEE
Confidence 111 2244679999987654433322 2344567777764
No 230
>PLN02427 UDP-apiose/xylose synthase
Probab=93.89 E-value=0.3 Score=50.33 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=62.9
Q ss_pred HhhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEE
Q 012280 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (467)
Q Consensus 89 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~ 167 (467)
+.++.++|+|.|+ |-+|+.+++.|...|--++..+|... +.+. +. .. .+.. ...+. ++.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~---~~~~-~l-~~---~~~~----------~~~~~--~~~ 69 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN---DKIK-HL-LE---PDTV----------PWSGR--IQF 69 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc---hhhh-hh-hc---cccc----------cCCCC--eEE
Confidence 4567788999996 66999999999998533677776431 1100 00 00 0000 00112 334
Q ss_pred ccccCCc-ccHHhhcCCCeEEEEcCCCh---------hH--------HHHHHHHHHHcCCcEEEEeecCccc
Q 012280 168 HREALRT-SNALEILSQYEIVVDATDNA---------PS--------RYMISDCCVVLGKPLVSGAALGLEG 221 (467)
Q Consensus 168 ~~~~~~~-~~~~~~~~~~DlVi~~~d~~---------~~--------r~~i~~~~~~~~~p~i~~~~~g~~G 221 (467)
+..++.. +...+.++++|+||.+.... .. -.-+-++|.+.++.+|..++...+|
T Consensus 70 ~~~Dl~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg 141 (386)
T PLN02427 70 HRINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 141 (386)
T ss_pred EEcCCCChHHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeC
Confidence 4445543 33455677889988766311 00 0112355677777888877655444
No 231
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.87 E-value=0.18 Score=51.14 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=28.4
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+|+|||+|.+|+.+|..|+.+|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999996 58888764
No 232
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.87 E-value=0.043 Score=50.43 Aligned_cols=93 Identities=22% Similarity=0.190 Sum_probs=57.7
Q ss_pred HHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEE
Q 012280 87 GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII 166 (467)
Q Consensus 87 ~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~ 166 (467)
....|.+++|.|+|+|.+|..+|+.|...|. ++..+|...-... .....
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~-----------------------~~~~~------- 78 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEE-----------------------GADEF------- 78 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHH-----------------------HHHHT-------
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhh-----------------------hcccc-------
Confidence 3458999999999999999999999999999 6888776432111 00000
Q ss_pred EccccCCcccHHhhcCCCeEEEEcC-CChhHHHHHHHHHHHc---CCcEEEE
Q 012280 167 EHREALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVVL---GKPLVSG 214 (467)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~~---~~p~i~~ 214 (467)
.+......++++.+|+|+.+. -++.++.+|++..... +.-+|+.
T Consensus 79 ----~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 79 ----GVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp ----TEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred ----cceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 011234556777888887755 3566777777654432 3345554
No 233
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.82 E-value=0.55 Score=47.53 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=57.9
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 94 ~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
++|+|.|+ |-+|+.+++.|...|=-++..+|...- + +..+.+.-.++.+..++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~---~-----------------------~~~~~~~~~~~~~~~Dl 55 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD---R-----------------------LGDLVNHPRMHFFEGDI 55 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH---H-----------------------HHHhccCCCeEEEeCCC
Confidence 47999998 669999999999864236777764210 0 01111111234444555
Q ss_pred C-c-ccHHhhcCCCeEEEEcCC--C-------hh--------HHHHHHHHHHHcCCcEEEEeecCccc
Q 012280 173 R-T-SNALEILSQYEIVVDATD--N-------AP--------SRYMISDCCVVLGKPLVSGAALGLEG 221 (467)
Q Consensus 173 ~-~-~~~~~~~~~~DlVi~~~d--~-------~~--------~r~~i~~~~~~~~~p~i~~~~~g~~G 221 (467)
. + ....++++++|+||.+.. + +. .-..+-++|++.+..+|..++....|
T Consensus 56 ~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg 123 (347)
T PRK11908 56 TINKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG 123 (347)
T ss_pred CCCHHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeec
Confidence 3 2 233455678899887532 1 11 11123456777778888876654333
No 234
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.81 E-value=0.44 Score=47.87 Aligned_cols=89 Identities=18% Similarity=0.271 Sum_probs=54.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc--
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA-- 171 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~-- 171 (467)
.||+|+|+|++||..+..|+++| ..++++-.+. +++ ++++- ...+......
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~~~----~l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------RLE----ALKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------HHH----HHHhC--CeEEecCCCccc
Confidence 47999999999999999999999 6666653221 112 22221 2222222221
Q ss_pred --CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCC
Q 012280 172 --LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK 209 (467)
Q Consensus 172 --~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~ 209 (467)
....+..+.+..+|+||.++=+..+...+..+....+.
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~ 93 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLLGP 93 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhcCCC
Confidence 11122234456899999998887777777766544433
No 235
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=93.79 E-value=0.26 Score=43.22 Aligned_cols=80 Identities=11% Similarity=0.204 Sum_probs=48.1
Q ss_pred CccCHHHHHHHhccCCCeEEEEecCcccccccC----------CCCc--eecCchh--hh-ccchhhHHhhhhhhhhcCC
Q 012280 349 SRISSKEYKEKVVNGEAHILVDVRPAHHFRIVS----------LPNS--INIPLSD--LE-SRLPEISSAMKEKEEHRGS 413 (467)
Q Consensus 349 ~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~h----------IpgS--inIP~~~--l~-~~~~~l~~~~~~~~~~~~~ 413 (467)
..+|.+++..+.+.+= -.+||.|+..|-.... -+|- ++||+.. +. +....+...+..
T Consensus 13 ~qlt~~d~~~L~~~Gi-ktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~~------- 84 (135)
T TIGR01244 13 PQLTKADAAQAAQLGF-KTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIGA------- 84 (135)
T ss_pred CCCCHHHHHHHHHCCC-cEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHHh-------
Confidence 4578888887665542 3799999876643211 1232 5677543 11 112333333322
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHH
Q 012280 414 NASSGSNLYVVCRRGNDSQRAVQALH 439 (467)
Q Consensus 414 ~~~~~~~IvvvCr~G~~S~~A~~~L~ 439 (467)
.+.||+++|++|.|+..++..+.
T Consensus 85 ---~~~pvL~HC~sG~Rt~~l~al~~ 107 (135)
T TIGR01244 85 ---AEGPVLAYCRSGTRSSLLWGFRQ 107 (135)
T ss_pred ---CCCCEEEEcCCChHHHHHHHHHH
Confidence 13799999999999877765543
No 236
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.77 E-value=0.2 Score=47.55 Aligned_cols=87 Identities=21% Similarity=0.173 Sum_probs=51.3
Q ss_pred cEEEEc-CCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 95 ~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
+|.||| +|.+|+.++..|+..| .++.++|.+ ..|++.+++.......... +...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~g---~~~~~~ 58 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD-------------------LEKAEEAAAKALEELGHGG---SDIKVT 58 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC-------------------HHHHHHHHHHHHhhccccC---CCceEE
Confidence 699997 8999999999999999 567776543 1233333332211100000 000011
Q ss_pred cccHHhhcCCCeEEEEcCCChhHHHHHHHHH
Q 012280 174 TSNALEILSQYEIVVDATDNAPSRYMISDCC 204 (467)
Q Consensus 174 ~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~ 204 (467)
..+..+.++.+|+||.|+-....+..+.++.
T Consensus 59 ~~~~~ea~~~aDvVilavp~~~~~~~l~~l~ 89 (219)
T TIGR01915 59 GADNAEAAKRADVVILAVPWDHVLKTLESLR 89 (219)
T ss_pred EeChHHHHhcCCEEEEECCHHHHHHHHHHHH
Confidence 1122455678999999988777766665543
No 237
>PRK08291 ectoine utilization protein EutC; Validated
Probab=93.76 E-value=0.24 Score=50.19 Aligned_cols=75 Identities=23% Similarity=0.237 Sum_probs=54.1
Q ss_pred cCcEEEEcCCchHHHHHHHHHH-hcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 93 KSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
.++|+|+|+|+.|...+..|.. .|+.++++++.+ ..|++.+++.+++.. .+++..+
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~--- 188 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVA--- 188 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEe---
Confidence 3689999999999999999985 578999998543 236777777765432 2333322
Q ss_pred CCcccHHhhcCCCeEEEEcCCC
Q 012280 172 LRTSNALEILSQYEIVVDATDN 193 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~ 193 (467)
++..+.+.++|+|+.||-.
T Consensus 189 ---~d~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 189 ---RDVHEAVAGADIIVTTTPS 207 (330)
T ss_pred ---CCHHHHHccCCEEEEeeCC
Confidence 2345667889999999865
No 238
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.74 E-value=0.25 Score=54.85 Aligned_cols=125 Identities=16% Similarity=0.175 Sum_probs=65.7
Q ss_pred CCCCHHHHhhcccccccC-CCCHH-HHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccC-
Q 012280 64 YGLSPDMIYRYSRHLLLP-SFGVE-GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHT- 140 (467)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~-~~G~~-~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~- 140 (467)
.+++-..++||--..... .|... .+..-.+++|+|||+|..|-.+|.+|++.|.. ++|+|.+. .++-+..+.
T Consensus 296 ~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~~----~~GG~l~~gi 370 (654)
T PRK12769 296 GAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRHP----EIGGLLTFGI 370 (654)
T ss_pred CCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC----CCCceeeecC
Confidence 456666677775332110 01110 11123578999999999999999999999985 99998652 222221111
Q ss_pred -CCccCCchhHHHHHHHHhhCCCcEEEEccccCC-cccHHhhcCCCeEEEEcCCChhH
Q 012280 141 -EPYIGQSKVKSAAATCRSINSTVHIIEHREALR-TSNALEILSQYEIVVDATDNAPS 196 (467)
Q Consensus 141 -~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~-~~~~~~~~~~~DlVi~~~d~~~~ 196 (467)
...+.+...+...+.++++ .+++.... .+. .-...++...||.||.++.....
T Consensus 371 p~~~l~~~~~~~~~~~~~~~--Gv~~~~~~-~v~~~i~~~~~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 371 PAFKLDKSLLARRREIFSAM--GIEFELNC-EVGKDISLESLLEDYDAVFVGVGTYRS 425 (654)
T ss_pred CCccCCHHHHHHHHHHHHHC--CeEEECCC-EeCCcCCHHHHHhcCCEEEEeCCCCCC
Confidence 1111111112223334443 24433211 111 11223344679999999987543
No 239
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=93.72 E-value=0.18 Score=53.93 Aligned_cols=121 Identities=14% Similarity=0.111 Sum_probs=73.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCc---hhHHHHHHHHhh-CCCcEEEEcc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQS---KVKSAAATCRSI-NSTVHIIEHR 169 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~---K~~~~~~~l~~l-np~v~v~~~~ 169 (467)
.+|.+||+|..|+.+|.+|+..|. ++++.|.+.=....+... ....|.. -+...++.+..+ .|++-+...+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999998 588887642111111100 0001211 233445555443 3666555443
Q ss_pred ccCCc----ccHHhhcCCCeEEEEcCCC-hhHHHHHHHHHHHcCCcEEEEeecCc
Q 012280 170 EALRT----SNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL 219 (467)
Q Consensus 170 ~~~~~----~~~~~~~~~~DlVi~~~d~-~~~r~~i~~~~~~~~~p~i~~~~~g~ 219 (467)
..-.- +.....+..=|+|||++-. +..-..+.+.+...|+.+|.+...|.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 33211 1223445667899998766 45555567788889999999876654
No 240
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=93.71 E-value=0.2 Score=53.34 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=70.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhh-CCCcEEEEcccc-C
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREA-L 172 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~l-np~v~v~~~~~~-~ 172 (467)
.|.|||+|..|..+|.+|+..|. ++++.|.+.-....+...... .-+..-+...++....+ .|++-+...+.. .
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~~---g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHAK---GKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhccC---CCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 48899999999999999999998 688888654332222211000 00011122334444443 356555544431 1
Q ss_pred Cc---ccHHhhcCCCeEEEEcCC-ChhHHHHHHHHHHHcCCcEEEEeecCc
Q 012280 173 RT---SNALEILSQYEIVVDATD-NAPSRYMISDCCVVLGKPLVSGAALGL 219 (467)
Q Consensus 173 ~~---~~~~~~~~~~DlVi~~~d-~~~~r~~i~~~~~~~~~p~i~~~~~g~ 219 (467)
.. +.....+..=|+|||++- .+..-....+.+...++.+|.+.+.|.
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 11 222344556689999875 344333345567788999998876653
No 241
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.68 E-value=0.55 Score=46.12 Aligned_cols=95 Identities=18% Similarity=0.224 Sum_probs=58.6
Q ss_pred cEEEEc-CCchHHHHHHHHHH-hcCCeEEEEe-CCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 95 SILVIG-AGGLGSPALLYLAA-CGVGRLGIVD-HDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 95 ~VlvvG-~GglGs~va~~La~-~Gvg~i~lvD-~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
||+|+| +|..|..+++.+.. .++.=+.++| .+.-. +|+. +.+ +....+. .+..+
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--------------~~~~----~~~-~~~~~~~-gv~~~--- 59 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--------------QGTD----AGE-LAGIGKV-GVPVT--- 59 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--------------cCCC----HHH-hcCcCcC-Cceee---
Confidence 799999 59999999999986 5776667777 22100 1110 000 1111110 01111
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEee
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~ 216 (467)
.+..++...+|+|||+| .+..-..+-..|.+.|+++|.+.+
T Consensus 60 ---~d~~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt 100 (266)
T TIGR00036 60 ---DDLEAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT 100 (266)
T ss_pred ---CCHHHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC
Confidence 12223334689999999 566667778889999999998764
No 242
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.65 E-value=0.28 Score=49.66 Aligned_cols=72 Identities=21% Similarity=0.298 Sum_probs=47.2
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
..+|+|+|+||+|.-.+++...+| -+++.+| ++..|.+.+++. --+.-|.. .
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a~~l----GAd~~i~~---~- 218 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELAKKL----GADHVINS---S- 218 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHHHHh----CCcEEEEc---C-
Confidence 578999999999999999999999 6777764 445566555543 22222222 2
Q ss_pred CcccHHhhcCCCeEEEEcCC
Q 012280 173 RTSNALEILSQYEIVVDATD 192 (467)
Q Consensus 173 ~~~~~~~~~~~~DlVi~~~d 192 (467)
+++.....-+.+|+||+++.
T Consensus 219 ~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 219 DSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CchhhHHhHhhCcEEEECCC
Confidence 22222222233999999987
No 243
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=93.62 E-value=0.19 Score=50.71 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=58.0
Q ss_pred HHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEE
Q 012280 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (467)
Q Consensus 88 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~ 167 (467)
-..+.+++|.|+|+|++|..+|+.|-..| ..|. ... | -.. .-+.+.++..+
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~-y~~---------r--------~~~-~~~~~~~~~~~--------- 207 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVIL-YHS---------R--------TQL-PPEEAYEYYAE--------- 207 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhcc-ceee-eec---------c--------cCC-chhhHHHhccc---------
Confidence 36899999999999999999999999866 3333 211 1 111 11111111111
Q ss_pred ccccCCcccHHhhcCCCeEEE-EcCCChhHHHHHHHHHHH---cCCcEEEE
Q 012280 168 HREALRTSNALEILSQYEIVV-DATDNAPSRYMISDCCVV---LGKPLVSG 214 (467)
Q Consensus 168 ~~~~~~~~~~~~~~~~~DlVi-~~~d~~~~r~~i~~~~~~---~~~p~i~~ 214 (467)
.....+.+.++|+|+ .|..+..++.++|..... .+.-+|+.
T Consensus 208 ------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~ 252 (336)
T KOG0069|consen 208 ------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNT 252 (336)
T ss_pred ------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEec
Confidence 234557778889655 577899999999976433 23345554
No 244
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.61 E-value=0.38 Score=46.36 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=28.9
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
+|++++|+|.|+ ||+|..+++.|+..|. ++.++|.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r 39 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADL 39 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467889999985 6799999999999997 4777653
No 245
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.59 E-value=0.071 Score=52.95 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=29.4
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
-++|.|||+|..|+.+|..|+.+|. +++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3689999999999999999999997 68888865
No 246
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.59 E-value=0.5 Score=47.81 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=31.0
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
..+.+|+|.|+|++|..++..+...|+.++.++|..
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~ 203 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVS 203 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 357899999999999999998889999888887653
No 247
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=93.57 E-value=0.38 Score=46.12 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=34.1
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
..|+.++|+|.|.|.+|..+++.|...|+.-+.+.|.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45889999999999999999999999998877788864
No 248
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.55 E-value=0.67 Score=46.34 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=29.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcC-CeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D 126 (467)
.+|+|||+|.+|..++..|...|. .++.++|.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 579999999999999999999997 478888754
No 249
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.53 E-value=0.27 Score=46.81 Aligned_cols=36 Identities=36% Similarity=0.418 Sum_probs=29.4
Q ss_pred hhhcCcEEEEc-CCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+.+++|+|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678899999 57799999999999997 57777654
No 250
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.53 E-value=0.14 Score=51.35 Aligned_cols=32 Identities=34% Similarity=0.437 Sum_probs=29.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.||.|||+|-+|+.+|..|+..|.+.+.++|-
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999999878999996
No 251
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.53 E-value=0.06 Score=53.40 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=29.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
++|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999997 588888763
No 252
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.51 E-value=0.39 Score=46.39 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=28.4
Q ss_pred hhhcCcEEEEcC-C-chHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGA-G-GLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~-G-glGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+++++|+|.|+ | |+|..+++.|+..|.. +.++|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 345688999997 5 7999999999999985 766653
No 253
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.47 E-value=0.43 Score=48.56 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=58.6
Q ss_pred CcEEEEcCCchHHHHHHHHHH--------hcCC--eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCc
Q 012280 94 SSILVIGAGGLGSPALLYLAA--------CGVG--RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV 163 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~--------~Gvg--~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v 163 (467)
-+|+|+|+|.+|+.+++.|.. .|+. =+.+.|.+. .++.+..+.. ..+.+..++...-.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~---------~~~~~~Gid~---~~l~~~~~~~~~~~ 70 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSG---------TIWLPEDIDL---REAKEVKENFGKLS 70 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCc---------cccCCCCCCh---HHHHHhhhccCchh
Confidence 479999999999999999876 5643 344445431 1122222221 22222222222111
Q ss_pred EEEEccccCCcccHHhhc--CCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEe
Q 012280 164 HIIEHREALRTSNALEIL--SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (467)
Q Consensus 164 ~v~~~~~~~~~~~~~~~~--~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~ 215 (467)
.+.. +......+..+++ .++|+||+++...... .+-..+...|+++|.+.
T Consensus 71 ~~~~-~~~~~~~~~~ell~~~~~DVvVd~t~~~~a~-~~~~~al~~G~~VVtan 122 (336)
T PRK08374 71 NWGN-DYEVYNFSPEEIVEEIDADIVVDVTNDKNAH-EWHLEALKEGKSVVTSN 122 (336)
T ss_pred hccc-cccccCCCHHHHHhcCCCCEEEECCCcHHHH-HHHHHHHhhCCcEEECC
Confidence 1100 0000011334555 4699999999754444 44556778999999764
No 254
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.43 E-value=0.67 Score=50.29 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=49.9
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhC-------CC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-------ST 162 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~ln-------p~ 162 (467)
-.++.|+|.|+ |++|..+++.|+..|. ++.+++.+. .|.+.+.+.+.++. +.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~ 137 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPV 137 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhcccccccccc
Confidence 34567889986 7799999999999997 466554431 12333333332211 11
Q ss_pred cEEEEccccCCc-ccHHhhcCCCeEEEEcCC
Q 012280 163 VHIIEHREALRT-SNALEILSQYEIVVDATD 192 (467)
Q Consensus 163 v~v~~~~~~~~~-~~~~~~~~~~DlVi~~~d 192 (467)
.++..+..+++. +.....+.++|+||.+..
T Consensus 138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 138 EKLEIVECDLEKPDQIGPALGNASVVICCIG 168 (576)
T ss_pred CceEEEEecCCCHHHHHHHhcCCCEEEEccc
Confidence 234555555554 334556788999998864
No 255
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.36 E-value=0.22 Score=50.10 Aligned_cols=98 Identities=23% Similarity=0.270 Sum_probs=61.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCC-Cc-EEEEcccc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS-TV-HIIEHREA 171 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp-~v-~v~~~~~~ 171 (467)
.+|.|+|+|+.|+.+|..|+..| ..+++...|.-....++.. +.|+ .. .+. .+..
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~---------------------~~N~~yLp~i~-lp~~ 58 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINET---------------------RENPKYLPGIL-LPPN 58 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhc---------------------CcCccccCCcc-CCcc
Confidence 58999999999999999999999 5667665543222111111 0111 00 011 1111
Q ss_pred C-CcccHHhhcCCCeEEEEcCCChhHHHHHHHH--HHHcCCcEEEE
Q 012280 172 L-RTSNALEILSQYEIVVDATDNAPSRYMISDC--CVVLGKPLVSG 214 (467)
Q Consensus 172 ~-~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~--~~~~~~p~i~~ 214 (467)
+ -..+..+.++++|+||-++-+...|..+..+ ....+.++|++
T Consensus 59 l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~ 104 (329)
T COG0240 59 LKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSA 104 (329)
T ss_pred cccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEE
Confidence 1 1244567778899999999998888877775 23456667765
No 256
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.33 E-value=0.27 Score=54.28 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=63.3
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
+.+|+|+|+|.+|..+++.|...|+. ++++|.|.- +++.++ +. + +.++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~-------------------~v~~~~----~~--g--~~v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPD-------------------HIETLR----KF--G--MKVFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHH-------------------HHHHHH----hc--C--CeEEEEeC
Confidence 57999999999999999999999985 889998742 233332 21 1 23444555
Q ss_pred CcccHH--hhcCCCeEEEEcCCChhHHHHHHHHHHHcC
Q 012280 173 RTSNAL--EILSQYEIVVDATDNAPSRYMISDCCVVLG 208 (467)
Q Consensus 173 ~~~~~~--~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~ 208 (467)
+..... .-++++|+||.++|+.+....+...++++.
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHF 489 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 543332 234689999999999998888877787763
No 257
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.32 E-value=0.39 Score=51.55 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=30.5
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+.+++|+|+|.|+.|..+|+.|...|. +++..|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence 456789999999999999999999997 58887754
No 258
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=93.29 E-value=0.021 Score=60.28 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=66.1
Q ss_pred cccCCC--CCccCHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhhhcCCCCCCCC
Q 012280 342 LNLLSA--DSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGS 419 (467)
Q Consensus 342 ~~~l~~--~~rIs~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 419 (467)
++.+.. .+|||++++..+ ....++|.|...||..+|+++|+|||+..-+...+.+.. .+.... ..+.
T Consensus 613 l~~l~se~~prmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~~~~~-l~~~~~------~~~~ 681 (725)
T KOG1093|consen 613 LQQLSSEHCPRISAEDLIWL----KMLYVLDTRQESEFQREHFSDSINIPFNNHEADLDWLRF-LPGIVC------SEGK 681 (725)
T ss_pred hHHhhhhcCccccHHHHHHH----HHHHHHhHHHHHHHHHhhccccccCCccchHHHHHHhhc-chHhHH------hhCC
Confidence 444443 378999998765 346799999999999999999999999843333322221 111110 0123
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCCeEEccccHHHHhhC
Q 012280 420 NLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWAND 459 (467)
Q Consensus 420 ~IvvvCr~G~~S~~A~~~L~~~G~~~v~~l~GGl~aW~~~ 459 (467)
.++++-....-+......+..+-+.++..+.+|++++...
T Consensus 682 ~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~~~~ 721 (725)
T KOG1093|consen 682 KCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNIDPV 721 (725)
T ss_pred eEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhcCcc
Confidence 4444444333444444455556677788888888855443
No 259
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=93.26 E-value=0.24 Score=48.38 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=63.1
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEE---EEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLG---IVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~---lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
.||.|||||.+|..++..|..-+...+. +.|.+.- -.+.+ .+..++-.--+.|....|++-|++-..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~----~~~~~------~~~~~~~~~l~~ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAAD----LPPAL------AGRVALLDGLPGLLAWRPDLVVEAAGQ 72 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHH----HHHHh------hccCcccCCHHHHhhcCCCEEEECCCH
Confidence 5899999999999999998764433222 2222210 00000 111222211233345567777776665
Q ss_pred cCCcccHHhhcC-CCeEEEEcCCChh---HHHHHHHHHHHcCCcE
Q 012280 171 ALRTSNALEILS-QYEIVVDATDNAP---SRYMISDCCVVLGKPL 211 (467)
Q Consensus 171 ~~~~~~~~~~~~-~~DlVi~~~d~~~---~r~~i~~~~~~~~~p~ 211 (467)
....+....+++ +.|+|+..+.-+. ....|.+.|.+.+..+
T Consensus 73 ~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i 117 (267)
T PRK13301 73 QAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARI 117 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEE
Confidence 555566667776 7888887765443 4555777777766544
No 260
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.24 E-value=0.47 Score=49.63 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=33.3
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQ 136 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq 136 (467)
+|.|||+|-+|..+|..|+..|. +++++|.+.-....++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g 42 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKG 42 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcC
Confidence 69999999999999999999997 588899875444445443
No 261
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=93.23 E-value=0.59 Score=45.64 Aligned_cols=94 Identities=24% Similarity=0.255 Sum_probs=58.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
.+|+|+|.-+-|..++..|...|..-+..+=.+ .|..+.. .. +. ...+...++
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~-----------------~~~~~~~-------~~-g~--~~v~~g~l~ 53 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTS-----------------EGKHLYP-------IH-QA--LTVHTGALD 53 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEEccC-----------------Ccccccc-------cc-CC--ceEEECCCC
Confidence 379999997789999999999986444333211 1111100 00 00 112233344
Q ss_pred cccHHhhcC--CCeEEEEcCCChhHH--HHHHHHHHHcCCcEEEE
Q 012280 174 TSNALEILS--QYEIVVDATDNAPSR--YMISDCCVVLGKPLVSG 214 (467)
Q Consensus 174 ~~~~~~~~~--~~DlVi~~~d~~~~r--~~i~~~~~~~~~p~i~~ 214 (467)
.+...++++ +.|+|||++..++.. .-+.++|.+.++|++--
T Consensus 54 ~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 54 PQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 444444553 489999999988854 44778999999999854
No 262
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.23 E-value=0.67 Score=48.77 Aligned_cols=91 Identities=15% Similarity=0.261 Sum_probs=58.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~ 174 (467)
+|+|+|+|.+|..+++.|...|. .+.++|.|.- +++.++ + ... +..+....+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~-------------------~~~~~~----~-~~~--~~~~~gd~~~ 54 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEE-------------------RLRRLQ----D-RLD--VRTVVGNGSS 54 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHH-------------------HHHHHH----h-hcC--EEEEEeCCCC
Confidence 79999999999999999999997 4778876421 222222 1 012 2333333333
Q ss_pred cc-HHhh-cCCCeEEEEcCCChhHHHHHHHHHHHc-CCcEE
Q 012280 175 SN-ALEI-LSQYEIVVDATDNAPSRYMISDCCVVL-GKPLV 212 (467)
Q Consensus 175 ~~-~~~~-~~~~DlVi~~~d~~~~r~~i~~~~~~~-~~p~i 212 (467)
.. ..+. +.++|.||.++++......+...++.. +.+.+
T Consensus 55 ~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~i 95 (453)
T PRK09496 55 PDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTT 95 (453)
T ss_pred HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeE
Confidence 22 2233 578999999998877777666677765 54443
No 263
>PRK07680 late competence protein ComER; Validated
Probab=93.22 E-value=0.59 Score=45.93 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=53.1
Q ss_pred cEEEEcCCchHHHHHHHHHHhcC---CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 95 SILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gv---g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
+|.|||+|.+|+.++..|...|. ..+.++|.+. .+++ .+.+..+.+.+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~----~~~~~~~g~~~~----- 53 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAY----HIKERYPGIHVA----- 53 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHH----HHHHHcCCeEEE-----
Confidence 59999999999999999999984 4566665431 1221 222222333211
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHH--cCCcEEEE
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSG 214 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~--~~~p~i~~ 214 (467)
.+..+.+.++|+||.|+-.......+.++... .+..+|+.
T Consensus 54 ---~~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~ 95 (273)
T PRK07680 54 ---KTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSI 95 (273)
T ss_pred ---CCHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 12334567899999998544455555554322 23445554
No 264
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=93.21 E-value=0.18 Score=53.86 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=31.0
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+++++|+|+|+||+|..++..|+..|+ ++.++|.
T Consensus 329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R 363 (477)
T PRK09310 329 PLNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR 363 (477)
T ss_pred CcCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 3567899999999999999999999998 8888764
No 265
>PLN02240 UDP-glucose 4-epimerase
Probab=93.21 E-value=0.8 Score=46.24 Aligned_cols=33 Identities=36% Similarity=0.631 Sum_probs=28.3
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEe
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD 124 (467)
|++++|+|.|+ |.+|+.+++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 56789999986 7799999999999995 677776
No 266
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=93.21 E-value=0.13 Score=54.43 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=32.6
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.|.+++|+|+|.|.+|..+|+.|...|. +++++|.|
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~d 286 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEID 286 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5899999999999999999999999998 68887665
No 267
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=93.19 E-value=0.13 Score=51.40 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=28.5
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 96 VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
|.|||+|.+|+.+|..|+..|.+++.|+|-|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 6899999999999999999887699999987
No 268
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.17 E-value=0.4 Score=45.65 Aligned_cols=35 Identities=34% Similarity=0.615 Sum_probs=30.0
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
|++++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67889999997 8999999999999997 57777643
No 269
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.16 E-value=0.15 Score=50.93 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=32.3
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+.+++|+|+|+|++|..++..|.+.|. +++++|.+
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4578999999999999999999999997 89988764
No 270
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.11 E-value=0.32 Score=53.08 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=31.6
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
-.+++|+|||+|..|-.+|..|++.|. +++++|...
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 357889999999999999999999998 599998543
No 271
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=93.02 E-value=0.47 Score=46.74 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=54.1
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHh--cCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAAC--GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~--Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
+..||.|||+|.+|..+++.|... |+.-..+.|.+ ..|++.+++ +.+ ...
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~-------------------~~~a~~~a~---~~g-~~~----- 56 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD-------------------PQRHADFIW---GLR-RPP----- 56 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC-------------------HHHHHHHHH---hcC-CCc-----
Confidence 346899999999999999999864 43222243332 112222222 221 000
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEE
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~ 213 (467)
. ..+..+++.+.|+|+.|+-+... ..+...+.+.|++++.
T Consensus 57 -~--~~~~eell~~~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~ 96 (271)
T PRK13302 57 -P--VVPLDQLATHADIVVEAAPASVL-RAIVEPVLAAGKKAIV 96 (271)
T ss_pred -c--cCCHHHHhcCCCEEEECCCcHHH-HHHHHHHHHcCCcEEE
Confidence 0 12344566789999999987554 3444566688888874
No 272
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.01 E-value=0.11 Score=51.89 Aligned_cols=88 Identities=22% Similarity=0.289 Sum_probs=57.1
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccC--------ccccccccccCCCccCCchhHHHHHHHHhhCCCcE
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE--------LNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVH 164 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~--------~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~ 164 (467)
-++|.|||+|-.|+-+|..++.+|+. +++.|-..-. ..++.|+. .-|+.+.+.....+..+.+...
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYD-VVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCc-eEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCc
Confidence 36899999999999999999997764 8888876211 12233332 2255555555666666555332
Q ss_pred EEEccccCCcccHHhhcCCCeEEEEcC-CChhHHHH
Q 012280 165 IIEHREALRTSNALEILSQYEIVVDAT-DNAPSRYM 199 (467)
Q Consensus 165 v~~~~~~~~~~~~~~~~~~~DlVi~~~-d~~~~r~~ 199 (467)
+ ..++++|+||.++ -+...+..
T Consensus 77 ~-------------~~l~~~DlVIEAv~E~levK~~ 99 (307)
T COG1250 77 L-------------AALKDADLVIEAVVEDLELKKQ 99 (307)
T ss_pred h-------------hHhccCCEEEEeccccHHHHHH
Confidence 1 2568899999876 44555444
No 273
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.00 E-value=0.52 Score=48.00 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=57.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
.+|+|+|+|.+|+.++..|+..| ++.++..+.-....++..-.. ....+.. ..+.+.+ .++
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~~-~~~l~~~---------~~l~~~i-------~~t 68 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHRN-SRYLGND---------VVLSDTL-------RAT 68 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCCC-cccCCCC---------cccCCCe-------EEE
Confidence 57999999999999999999998 455554432111111111000 0001000 0001111 111
Q ss_pred cccHHhhcCCCeEEEEcCCChhHHHHHHHHHHH--cCCcEEEE
Q 012280 174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSG 214 (467)
Q Consensus 174 ~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~--~~~p~i~~ 214 (467)
.+..+.++++|+||.|+-+...+..+.++... .+.++|+.
T Consensus 69 -~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl 110 (341)
T PRK12439 69 -TDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSL 110 (341)
T ss_pred -CCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 23335578899999999988888887776543 33456665
No 274
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=93.00 E-value=0.4 Score=49.44 Aligned_cols=123 Identities=18% Similarity=0.232 Sum_probs=79.7
Q ss_pred CCCCCHHHHhhcccccccCCCCHHHH------------------HhhhcCcEEEEcCCchHHHHHHHHHHhcCC--eEEE
Q 012280 63 DYGLSPDMIYRYSRHLLLPSFGVEGQ------------------SNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGI 122 (467)
Q Consensus 63 ~~~l~~~~~~ry~Rq~~l~~~G~~~q------------------~~L~~~~VlvvG~GglGs~va~~La~~Gvg--~i~l 122 (467)
..++--++..||.-.+-+ |..+-| ++|+..||++.|+|+.|..++..|..+|+. +|.+
T Consensus 153 p~cf~ie~~lr~~~~IPv--FhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~ 230 (432)
T COG0281 153 PRCFAIEERLRYRMNIPV--FHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFV 230 (432)
T ss_pred chhhHHHHHHhhcCCCCc--ccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEE
Confidence 345666777787655544 754322 589999999999999999999999999998 9999
Q ss_pred EeCCccCccccccccccCC-Cc--cCCchhHHHHHHHHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEcCCChh-HHH
Q 012280 123 VDHDVVELNNMHRQVIHTE-PY--IGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP-SRY 198 (467)
Q Consensus 123 vD~D~V~~sNl~Rq~l~~~-~d--iG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~~-~r~ 198 (467)
+|.--+ ++.. .| .++.|.+.+.+...... . .+.+.+.|++|.|+..-. +..
T Consensus 231 ~D~~G~---------l~~~r~~~~~~~~k~~~a~~~~~~~~---~-------------~~~~~~adv~iG~S~~G~~t~e 285 (432)
T COG0281 231 VDRKGL---------LYDGREDLTMNQKKYAKAIEDTGERT---L-------------DLALAGADVLIGVSGVGAFTEE 285 (432)
T ss_pred EecCCc---------ccCCCcccccchHHHHHHHhhhcccc---c-------------cccccCCCEEEEcCCCCCcCHH
Confidence 997533 2222 12 35556554443322211 0 125678999999887633 333
Q ss_pred HHHHHHHHcCCcEEEEe
Q 012280 199 MISDCCVVLGKPLVSGA 215 (467)
Q Consensus 199 ~i~~~~~~~~~p~i~~~ 215 (467)
++...+.. |+|.+-
T Consensus 286 ~V~~Ma~~---PiIfal 299 (432)
T COG0281 286 MVKEMAKH---PIIFAL 299 (432)
T ss_pred HHHHhccC---CEEeec
Confidence 44444322 888763
No 275
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.99 E-value=0.74 Score=45.41 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=55.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhcC---CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 95 SILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gv---g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
+|.|||+|.+|..++..|...|. .++.++|.+.- .|.+ .+....+.+.+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~~----~l~~~~~~~~~------ 54 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHFN----QLYDKYPTVEL------ 54 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHHH----HHHHHcCCeEE------
Confidence 69999999999999999999983 46666654310 1111 12222222221
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHH--HcCCcEEEE
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG 214 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~--~~~~p~i~~ 214 (467)
. .+..+.++++|+||.|+-....+..+.++.. ..++.+|+.
T Consensus 55 -~-~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~ 97 (277)
T PRK06928 55 -A-DNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSI 97 (277)
T ss_pred -e-CCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 1 1233456789999999886666666665532 245566664
No 276
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.98 E-value=0.35 Score=50.97 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=30.5
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+++++|+|+|.|++|..+|+.|+..|. ++.+.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 567889999999999999999999997 57887754
No 277
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.97 E-value=0.24 Score=49.79 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=29.5
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
..+|+|+|+|++|+.+|..|+.+|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 3579999999999999999999994 688887664
No 278
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=92.95 E-value=0.33 Score=42.17 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=44.3
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
..-||.|||+|-+|..+++.|..+|.. |.-| +. +....++++...-+...+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~----- 60 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHE-VVGV---------------YS-------RSPASAERAAAFIGAGAIL----- 60 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSE-EEEE---------------SS-------CHH-HHHHHHC--TT---------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCe-EEEE---------------Ee-------CCccccccccccccccccc-----
Confidence 456899999999999999999999963 3322 11 1123334444443333221
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHH
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCC 204 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~ 204 (467)
+..+.++.+|+||.++-+-.......+++
T Consensus 61 ----~~~~~~~~aDlv~iavpDdaI~~va~~La 89 (127)
T PF10727_consen 61 ----DLEEILRDADLVFIAVPDDAIAEVAEQLA 89 (127)
T ss_dssp -----TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred ----ccccccccCCEEEEEechHHHHHHHHHHH
Confidence 22356778999998885555555555544
No 279
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.93 E-value=0.49 Score=45.44 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=29.6
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 467899999996 7799999999999997 5777665
No 280
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.88 E-value=0.53 Score=45.79 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=51.4
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCC--eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 95 SILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
+|.|||+|-+|..+++.|...|.. .+.+.|.+ ..|++ .+.+..+.+.+.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~-------------------~~~~~----~l~~~~~~~~~~------ 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN-------------------AQIAA----RLAERFPKVRIA------ 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCC-------------------HHHHH----HHHHHcCCceEe------
Confidence 699999999999999999998853 22332211 12222 222222322211
Q ss_pred CcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 012280 173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 173 ~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
.+..+.++++|+||.|+-.......+.......+..+|+.
T Consensus 53 --~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis~ 92 (258)
T PRK06476 53 --KDNQAVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVISV 92 (258)
T ss_pred --CCHHHHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEEE
Confidence 1233456779999999885445555554422344555653
No 281
>PRK06270 homoserine dehydrogenase; Provisional
Probab=92.87 E-value=0.47 Score=48.36 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=56.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHh--------cC--CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCc
Q 012280 94 SSILVIGAGGLGSPALLYLAAC--------GV--GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV 163 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~--------Gv--g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v 163 (467)
-+|+|+|+|.+|..+++.|... |+ .-..++|.+. .++.+. |.. .+.+.+......
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~---------~~~~~~--Gi~-~~~~~~~~~~~~--- 67 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSG---------SAIDPD--GLD-LELALKVKEETG--- 67 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCC---------cccCcC--CCC-HHHHHHHHhccC---
Confidence 4799999999999999999765 43 3344556431 112221 221 111122222111
Q ss_pred EEEEccccCCcccHHhhc--CCCeEEEEcCCChh----HHHHHHHHHHHcCCcEEEE
Q 012280 164 HIIEHREALRTSNALEIL--SQYEIVVDATDNAP----SRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 164 ~v~~~~~~~~~~~~~~~~--~~~DlVi~~~d~~~----~r~~i~~~~~~~~~p~i~~ 214 (467)
.+..+.......+..+++ .+.|+||+||.+.. .-+.+...+.++|+++|.+
T Consensus 68 ~~~~~~~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta 124 (341)
T PRK06270 68 KLADYPEGGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS 124 (341)
T ss_pred CcccCccccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC
Confidence 111111111112334444 35899999997532 2244455677899999886
No 282
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.85 E-value=0.54 Score=46.59 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=27.1
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999996 57777654
No 283
>PLN03139 formate dehydrogenase; Provisional
Probab=92.82 E-value=0.3 Score=50.61 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=59.3
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
..|.+++|.|||+|.+|..+|+.|...|+. +..+|.... +.+.. .+. .+ ..
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~~-------------------~~~~~----~~~--g~--~~- 245 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLKM-------------------DPELE----KET--GA--KF- 245 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCCc-------------------chhhH----hhc--Cc--ee-
Confidence 469999999999999999999999999985 555654211 00000 011 01 11
Q ss_pred cccCCcccHHhhcCCCeEEEEcC-CChhHHHHHHHHHHH---cCCcEEEEe
Q 012280 169 REALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVV---LGKPLVSGA 215 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~---~~~p~i~~~ 215 (467)
.++..++++.+|+|+.+. .+..++.+++..... .+.-+|+.+
T Consensus 246 -----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 246 -----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred -----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 124567778899887655 567788888764332 344466653
No 284
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.80 E-value=0.31 Score=50.44 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=53.0
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcCC------eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhC-CCc-E
Q 012280 94 SSILVIGA-GGLGSPALLYLAACGVG------RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STV-H 164 (467)
Q Consensus 94 ~~VlvvG~-GglGs~va~~La~~Gvg------~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~ln-p~v-~ 164 (467)
-||.|||+ |.+|+.+|..|+..|+- .|.|+|.| +-+.|++..+.-|.... |.. .
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD-----------------~~~~~a~g~a~DL~d~a~~~~~~ 107 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE-----------------RSKEALEGVAMELEDSLYPLLRE 107 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC-----------------ccchhhhHHHHHHHHhhhhhcCc
Confidence 47999999 99999999999999984 36666654 34456666666665544 432 1
Q ss_pred EEEccccCCcccHHhhcCCCeEEEEcCCCh
Q 012280 165 IIEHREALRTSNALEILSQYEIVVDATDNA 194 (467)
Q Consensus 165 v~~~~~~~~~~~~~~~~~~~DlVi~~~d~~ 194 (467)
+. ++. +..+.++++|+||-+...+
T Consensus 108 v~-----i~~-~~y~~~kdaDIVVitAG~p 131 (387)
T TIGR01757 108 VS-----IGI-DPYEVFEDADWALLIGAKP 131 (387)
T ss_pred eE-----Eec-CCHHHhCCCCEEEECCCCC
Confidence 21 111 2245678999999877664
No 285
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.75 E-value=0.8 Score=45.80 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=31.6
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
..++|||+|+|.+|-.....+-..|..+|.++|-+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~ 203 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV 203 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC
Confidence 46889999999999999999999999999998754
No 286
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=92.71 E-value=0.54 Score=47.31 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=60.5
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhH-HHHHHHHhhCCCcEEEEccc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK-SAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~-~~~~~l~~lnp~v~v~~~~~ 170 (467)
...+|+|+|+||+|-.+..-+..+|.++|.-||-.. +.-.+.++|..+. .=.+|-. -+.+.+.+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~-~Kl~~A~~fGAT~--~vn~~~~~~vv~~i~~------------ 249 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINP-EKLELAKKFGATH--FVNPKEVDDVVEAIVE------------ 249 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCH-HHHHHHHhcCCce--eecchhhhhHHHHHHH------------
Confidence 457899999999999999999999999999998642 1112333332211 1011111 12222222
Q ss_pred cCCcccHHhhcC-CCeEEEEcCCChhHHHHHHHHHHHcCCcEE
Q 012280 171 ALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLV 212 (467)
Q Consensus 171 ~~~~~~~~~~~~-~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i 212 (467)
+-. ..|.+|+|+.+..+-..--+.+.+-|.-++
T Consensus 250 ---------~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 250 ---------LTDGGADYAFECVGNVEVMRQALEATHRGGTSVI 283 (366)
T ss_pred ---------hcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEE
Confidence 223 789999999999865554555666555443
No 287
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.70 E-value=0.66 Score=47.14 Aligned_cols=37 Identities=24% Similarity=0.107 Sum_probs=30.5
Q ss_pred HhhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 89 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+++.++|+|.|+ |=+|+.+++.|...|. +++.+|..
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4577799999997 5599999999999985 67777753
No 288
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.66 E-value=1.6 Score=41.30 Aligned_cols=93 Identities=17% Similarity=0.264 Sum_probs=59.1
Q ss_pred EEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC-C
Q 012280 96 ILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL-R 173 (467)
Q Consensus 96 VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~-~ 173 (467)
|+|+|+ |.+|..++..|...|.. +.++ .+.. .....+.++.. .+++. ..++ +
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l---------------~R~~------~~~~~~~l~~~--g~~vv--~~d~~~ 54 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRAL---------------VRDP------SSDRAQQLQAL--GAEVV--EADYDD 54 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEE---------------ESSS------HHHHHHHHHHT--TTEEE--ES-TT-
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEE---------------Eecc------chhhhhhhhcc--cceEe--ecccCC
Confidence 789997 77999999999997654 4432 1111 22233445543 45544 3333 4
Q ss_pred cccHHhhcCCCeEEEEcCCCh---h--HHHHHHHHHHHcCCcEEEE
Q 012280 174 TSNALEILSQYEIVVDATDNA---P--SRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 174 ~~~~~~~~~~~DlVi~~~d~~---~--~r~~i~~~~~~~~~p~i~~ 214 (467)
.+.....|++.|.|+.++... . ...-+-++|.+.|+..+--
T Consensus 55 ~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ 100 (233)
T PF05368_consen 55 PESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVP 100 (233)
T ss_dssp HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEE
Confidence 566778899999999998842 2 2334778888988876643
No 289
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=92.65 E-value=0.022 Score=57.39 Aligned_cols=49 Identities=2% Similarity=0.074 Sum_probs=39.1
Q ss_pred CHHHHHHHhccCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHH
Q 012280 352 SSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISS 402 (467)
Q Consensus 352 s~~e~~~~l~~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~ 402 (467)
+++++.+.+... ...+|+|++..|..+||||++|+|...+..++..+..
T Consensus 17 ~~~~~~~~l~~~--~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~ 65 (314)
T PRK00142 17 DPEAFRDEHLAL--CKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKA 65 (314)
T ss_pred CHHHHHHHHHHH--HHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhh
Confidence 367777777654 4689999999999999999999999777776655544
No 290
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.61 E-value=0.52 Score=44.86 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=30.2
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++++++|+|+|+ |++|..+++.|+..|.. +.+++.+
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 367889999996 67999999999999986 8877654
No 291
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=92.61 E-value=0.51 Score=47.51 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=48.7
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhc-CCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACG-VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~G-vg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
+++++|+|.|+ |++|+.+++.|+..| ..++.++|.+.. +...+...+ +...+..+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~-------------------~~~~~~~~~----~~~~~~~v 58 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL-------------------KQWEMQQKF----PAPCLRFF 58 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh-------------------HHHHHHHHh----CCCcEEEE
Confidence 45678999986 779999999999987 457888875421 111111111 11234444
Q ss_pred cccCCc-ccHHhhcCCCeEEEEcCC
Q 012280 169 REALRT-SNALEILSQYEIVVDATD 192 (467)
Q Consensus 169 ~~~~~~-~~~~~~~~~~DlVi~~~d 192 (467)
..+++. +...+.++++|+||.+..
T Consensus 59 ~~Dl~d~~~l~~~~~~iD~Vih~Ag 83 (324)
T TIGR03589 59 IGDVRDKERLTRALRGVDYVVHAAA 83 (324)
T ss_pred EccCCCHHHHHHHHhcCCEEEECcc
Confidence 445543 344556677899987653
No 292
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=92.58 E-value=0.69 Score=43.54 Aligned_cols=90 Identities=23% Similarity=0.261 Sum_probs=59.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
.++.|+|.|-+|+.++..|+.+|.. +.|-- .-+..+.+++++.+ .|. ++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~e-V~igs------------------~r~~~~~~a~a~~l---~~~---------i~ 50 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHE-VIIGS------------------SRGPKALAAAAAAL---GPL---------IT 50 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCe-EEEec------------------CCChhHHHHHHHhh---ccc---------cc
Confidence 4689999999999999999999942 33310 11122333333333 332 34
Q ss_pred cccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHc-CCcEEEE
Q 012280 174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVVL-GKPLVSG 214 (467)
Q Consensus 174 ~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~-~~p~i~~ 214 (467)
.....+..+..|+||.++-.....-.+.++.-.. ++-+|+.
T Consensus 51 ~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~ 92 (211)
T COG2085 51 GGSNEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDA 92 (211)
T ss_pred cCChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEec
Confidence 4455666788999999988777777777766545 4767765
No 293
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.56 E-value=0.53 Score=47.82 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=28.8
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+.+|+|+|+|++|..++..+...|+ ++.+++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 56899999999999999999889998 5777765
No 294
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.46 E-value=0.45 Score=50.06 Aligned_cols=93 Identities=17% Similarity=0.307 Sum_probs=57.3
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
+.+++|+|+|+|..|..++++|.+.| ..+++.|.+... .|..-+.+. -+.+++.. .
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~-~~~~~~~~~--------------------~~~i~~~~--g 60 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP-EGLAAQPLL--------------------LEGIEVEL--G 60 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc-cchhhhhhh--------------------ccCceeec--C
Confidence 34899999999999999999999999 568888876544 332222111 11222221 1
Q ss_pred cCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEE
Q 012280 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV 212 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i 212 (467)
.. . .+.+..+|+||-.-.-+..-.+ -+.+...|+|++
T Consensus 61 ~~---~-~~~~~~~d~vV~SPGi~~~~p~-v~~A~~~gi~i~ 97 (448)
T COG0771 61 SH---D-DEDLAEFDLVVKSPGIPPTHPL-VEAAKAAGIEII 97 (448)
T ss_pred cc---c-hhccccCCEEEECCCCCCCCHH-HHHHHHcCCcEE
Confidence 11 1 1456789999976544333333 334566677765
No 295
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=92.45 E-value=0.18 Score=50.44 Aligned_cols=33 Identities=36% Similarity=0.612 Sum_probs=30.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCC-eEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg-~i~lvD~D 126 (467)
.||.|+|+|.+|+.+|..|+.-+++ .+.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4899999999999999999999999 99999853
No 296
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=92.40 E-value=0.87 Score=45.63 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=30.1
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCC--eEEEEeCCccC
Q 012280 95 SILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVVE 129 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~V~ 129 (467)
+|.|||+||-|+.++.+|.+.|+. .+..+|.|.-.
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~ 38 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQA 38 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHH
Confidence 699999999999999999999985 56678887743
No 297
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=92.37 E-value=0.6 Score=41.45 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=53.2
Q ss_pred CcEEEEc-CCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 94 SSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 94 ~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
+.|+|+| .+|+|-++++.|+..|-.++.+++.+ .-..+.+.+...++..+ .++..+..++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D~ 61 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECDL 61 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--cccccccccc
Confidence 4688998 56799999999999999898887654 01234455556666444 5566665555
Q ss_pred Ccc-cH-------HhhcCCCeEEEEcCCCh
Q 012280 173 RTS-NA-------LEILSQYEIVVDATDNA 194 (467)
Q Consensus 173 ~~~-~~-------~~~~~~~DlVi~~~d~~ 194 (467)
+.. .. .+.+...|++|.+....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 62 SDPESIRALIEEVIKRFGPLDILINNAGIF 91 (167)
T ss_dssp TSHHHHHHHHHHHHHHHSSESEEEEECSCT
T ss_pred cccccccccccccccccccccccccccccc
Confidence 532 11 12335788888776443
No 298
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=92.36 E-value=0.89 Score=37.21 Aligned_cols=90 Identities=19% Similarity=0.312 Sum_probs=54.1
Q ss_pred hcCcEEEEcCCchHHHHHHH-HHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 92 LKSSILVIGAGGLGSPALLY-LAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~-La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
+..+|+|+|+|++|..++.. +...|.+-..++|.|. ..+|+.- . .+ ..+.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~G~~i-----------~-gi--pV~~- 52 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKIGKEI-----------G-GI--PVYG- 52 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTTTSEE-----------T-TE--EEES-
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------CccCcEE-----------C-CE--Eeec-
Confidence 45789999999999988743 4578888889998662 2344311 0 12 2221
Q ss_pred cCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 012280 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
.-+.+.+.. +.|+.|.|+....++..+.+ +...|+..|..
T Consensus 53 --~~~~l~~~~-~i~iaii~VP~~~a~~~~~~-~~~~gIk~i~n 92 (96)
T PF02629_consen 53 --SMDELEEFI-EIDIAIITVPAEAAQEVADE-LVEAGIKGIVN 92 (96)
T ss_dssp --SHHHHHHHC-TTSEEEEES-HHHHHHHHHH-HHHTT-SEEEE
T ss_pred --cHHHhhhhh-CCCEEEEEcCHHHHHHHHHH-HHHcCCCEEEE
Confidence 112333444 48888888865555555544 44588877654
No 299
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=92.33 E-value=1 Score=50.19 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=59.6
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
..++++|+|.|+ |-+|+.+++.|...|=-+++.+|...- +..+ .+ . ++ .++.+
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~---~~~~-------------------~~-~-~~--~~~~~ 365 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD---AISR-------------------FL-G-HP--RFHFV 365 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch---hhhh-------------------hc-C-CC--ceEEE
Confidence 345678999996 559999999999864235777765321 0000 00 0 11 23334
Q ss_pred cccCCccc--HHhhcCCCeEEEEcCCCh-----------------hHHHHHHHHHHHcCCcEEEEeecCccc
Q 012280 169 REALRTSN--ALEILSQYEIVVDATDNA-----------------PSRYMISDCCVVLGKPLVSGAALGLEG 221 (467)
Q Consensus 169 ~~~~~~~~--~~~~~~~~DlVi~~~d~~-----------------~~r~~i~~~~~~~~~p~i~~~~~g~~G 221 (467)
..+++... ..+.++++|+||.+.... ..-.-+-++|.+.++.+|..++...+|
T Consensus 366 ~gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg 437 (660)
T PRK08125 366 EGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYG 437 (660)
T ss_pred eccccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcC
Confidence 45554321 234567788888654211 111224466778888888776654444
No 300
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.32 E-value=0.35 Score=47.29 Aligned_cols=73 Identities=23% Similarity=0.300 Sum_probs=47.3
Q ss_pred EEEEcC-CchHHHHHHHHHHhc--C-CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCC---CcEEEEc
Q 012280 96 ILVIGA-GGLGSPALLYLAACG--V-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS---TVHIIEH 168 (467)
Q Consensus 96 VlvvG~-GglGs~va~~La~~G--v-g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp---~v~v~~~ 168 (467)
|.|||+ |.+|+.++..|+..| . .+|.|+|.+. .|++..+..|+.... ..+++..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~i~~~ 61 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE-------------------EKLKGVAMDLQDAVEPLADIKVSIT 61 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc-------------------ccchHHHHHHHHhhhhccCcEEEEC
Confidence 689999 889999999999998 4 6899998653 222333333443322 2333321
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCC
Q 012280 169 REALRTSNALEILSQYEIVVDATDN 193 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~ 193 (467)
.+..+.++++|+||.+...
T Consensus 62 ------~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 62 ------DDPYEAFKDADVVIITAGV 80 (263)
T ss_pred ------CchHHHhCCCCEEEECCCC
Confidence 1224557899999986644
No 301
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=92.30 E-value=0.43 Score=48.79 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=56.6
Q ss_pred cEEEEcC-CchHHHHHHHHHHhcCCeEE-EEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 95 SILVIGA-GGLGSPALLYLAACGVGRLG-IVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 95 ~VlvvG~-GglGs~va~~La~~Gvg~i~-lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
+|+|+|+ |.+|.++++.|...-.-++. +++.+. ..|+. +.+..|++... ....+
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~-~~~~~ 57 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGL-VDLNL 57 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCcccccc-CCcee
Confidence 7999999 77899999999865333344 545431 12221 11122322110 01112
Q ss_pred CcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEee
Q 012280 173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (467)
Q Consensus 173 ~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~ 216 (467)
...+..++..++|+|+.|+.+...+.++..+ ...|+.+|+.++
T Consensus 58 ~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~ 100 (346)
T TIGR01850 58 EPIDEEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA 100 (346)
T ss_pred ecCCHHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence 2112234445799999999988777666554 557898998643
No 302
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=92.28 E-value=0.51 Score=54.13 Aligned_cols=42 Identities=26% Similarity=0.299 Sum_probs=35.7
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCcccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNM 133 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl 133 (467)
-..+||+|||+|..|-.+|.+|++.|.. ++++|...++.-|.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~gl~~ 422 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITLLPF 422 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEcccccccccc
Confidence 4678999999999999999999999975 99999876654443
No 303
>PRK05872 short chain dehydrogenase; Provisional
Probab=92.27 E-value=0.79 Score=45.39 Aligned_cols=36 Identities=33% Similarity=0.525 Sum_probs=30.0
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+++++|+|.|+ ||+|..+++.|+..|. ++.+++.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 42 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLE 42 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 367889999986 7799999999999997 57777653
No 304
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.25 E-value=0.92 Score=44.72 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=54.1
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcC---CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gv---g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
..+|.+||+|..|..++..|...|+ .+++++|.. . ..|++.++. .. .+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~----------~--------~~~~~~l~~---~~--g~~~~--- 56 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRS----------N--------ETRLQELHQ---KY--GVKGT--- 56 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC----------C--------HHHHHHHHH---hc--CceEe---
Confidence 4589999999999999999999983 233333211 0 012222221 11 12211
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHH--cCCcEEEE
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSG 214 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~--~~~p~i~~ 214 (467)
.+..+..+++|+||.|+-.......+..+... .+..+|+.
T Consensus 57 -----~~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~ 98 (279)
T PRK07679 57 -----HNKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISL 98 (279)
T ss_pred -----CCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 12234567899999999887777777665422 34456664
No 305
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.23 E-value=0.68 Score=51.34 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=66.0
Q ss_pred CCCCHHHHhhcccccccC-CCCHHH-HHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCC
Q 012280 64 YGLSPDMIYRYSRHLLLP-SFGVEG-QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTE 141 (467)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~-~~G~~~-q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~ 141 (467)
.+++-..++||--..... .|...- ...-..++|+|||+|..|-.+|..|++.|. +++|+|....- ....-+.-
T Consensus 279 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~----GG~l~~gi 353 (639)
T PRK12809 279 GAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEI----GGMLTFGI 353 (639)
T ss_pred CCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCC----CCeeeccC
Confidence 456777777775432211 111110 112257899999999999999999999998 58998865421 11111110
Q ss_pred CccCCchh--HHHHHHHHhhCCCcEEEEccccCCc-ccHHhhcCCCeEEEEcCCChh
Q 012280 142 PYIGQSKV--KSAAATCRSINSTVHIIEHREALRT-SNALEILSQYEIVVDATDNAP 195 (467)
Q Consensus 142 ~diG~~K~--~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~~DlVi~~~d~~~ 195 (467)
...-.+|. +...+.++++ .+++.... .+.. -...++...||.||.++....
T Consensus 354 p~~~l~~~~~~~~~~~~~~~--Gv~~~~~~-~v~~~~~~~~l~~~~DaV~latGa~~ 407 (639)
T PRK12809 354 PPFKLDKTVLSQRREIFTAM--GIDFHLNC-EIGRDITFSDLTSEYDAVFIGVGTYG 407 (639)
T ss_pred CcccCCHHHHHHHHHHHHHC--CeEEEcCC-ccCCcCCHHHHHhcCCEEEEeCCCCC
Confidence 11111221 2223344444 34433222 1111 123344567999999998754
No 306
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.17 E-value=0.38 Score=48.02 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=56.7
Q ss_pred HhhhcCcEEEEcCC-chHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEE
Q 012280 89 SNLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (467)
Q Consensus 89 ~~L~~~~VlvvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~ 167 (467)
..|++++|+|||.| -+|.+++.+|.+.|. .+++++..+
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t---------------------------------------- 193 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRS---------------------------------------- 193 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCC----------------------------------------
Confidence 47899999999997 689999999999996 577764321
Q ss_pred ccccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeec
Q 012280 168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL 217 (467)
Q Consensus 168 ~~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~ 217 (467)
.+..+..+.+|+||.|+..+. .+...-.+.|.-+|+.+..
T Consensus 194 -------~~l~e~~~~ADIVIsavg~~~---~v~~~~ik~GaiVIDvgin 233 (301)
T PRK14194 194 -------TDAKALCRQADIVVAAVGRPR---LIDADWLKPGAVVIDVGIN 233 (301)
T ss_pred -------CCHHHHHhcCCEEEEecCChh---cccHhhccCCcEEEEeccc
Confidence 034466678999999988764 2223335666777777654
No 307
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=92.16 E-value=0.81 Score=46.80 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=64.5
Q ss_pred HHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCe--EEEEeCCc--cCccccccccccCCCc---cCC-chhHHHHHHHH
Q 012280 86 EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGR--LGIVDHDV--VELNNMHRQVIHTEPY---IGQ-SKVKSAAATCR 157 (467)
Q Consensus 86 ~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~--i~lvD~D~--V~~sNl~Rq~l~~~~d---iG~-~K~~~~~~~l~ 157 (467)
+.|+--.+.+|.|||+||-||.++..|.+.|+.. +..+|.|. ++.+...+-++..... .|. ...+..++...
T Consensus 10 ~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~~G~~~ae 89 (349)
T TIGR00065 10 ELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPEIGRKAAE 89 (349)
T ss_pred hhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHHHHHHHHH
Confidence 3444445678999999999999999999999864 45588886 3333333334333211 111 01111111111
Q ss_pred hhCCCcEEEEccccCCcccHHhhcCCCeEEEEc------CCChhHHHHHHHHHHHcCCcEEEE
Q 012280 158 SINSTVHIIEHREALRTSNALEILSQYEIVVDA------TDNAPSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 158 ~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~------~d~~~~r~~i~~~~~~~~~p~i~~ 214 (467)
+. .+.....++++|+|+-+ |.+-.+ .+|.+++++.+++.+..
T Consensus 90 e~--------------~d~Ir~~le~~D~vfI~aglGGGTGSG~a-pvia~~ake~~~l~vai 137 (349)
T TIGR00065 90 ES--------------RDEIRKLLEGADMVFITAGMGGGTGTGAA-PVVAKIAKELGALTVAV 137 (349)
T ss_pred HH--------------HHHHHHHHhCCCEEEEEEeccCccchhHH-HHHHHHHHHcCCCEEEE
Confidence 10 01223445678877754 344333 37788888887766554
No 308
>PRK08251 short chain dehydrogenase; Provisional
Probab=92.16 E-value=0.8 Score=43.62 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=42.5
Q ss_pred cCcEEEEc-CCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 93 KSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 93 ~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
+++|+|.| .||+|..+++.|+..|. ++.+++.+. .+.+.+...+.+.+|...+..+..+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 46789998 66799999999999995 677776531 2334455556666666666666555
Q ss_pred CCc
Q 012280 172 LRT 174 (467)
Q Consensus 172 ~~~ 174 (467)
++.
T Consensus 62 ~~~ 64 (248)
T PRK08251 62 VND 64 (248)
T ss_pred CCC
Confidence 553
No 309
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.15 E-value=0.12 Score=47.85 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=48.2
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhH-HHHHHHHhhCCCcEEEEccccC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK-SAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~-~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
.+|.|+|+|=+|.++|..||..|. ++.-+|.|.-....+++-..+.. + +-.+ .+++.++.- ...+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~-E---~~l~~ll~~~~~~~--~l~~------- 66 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIY-E---PGLDELLKENVSAG--RLRA------- 66 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS--C---TTHHHHHHHHHHTT--SEEE-------
T ss_pred CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhcccccc-c---cchhhhhccccccc--cchh-------
Confidence 479999999999999999999995 58888988766666666554432 2 2222 223333211 1111
Q ss_pred CcccHHhhcCCCeEEEEcCCChh
Q 012280 173 RTSNALEILSQYEIVVDATDNAP 195 (467)
Q Consensus 173 ~~~~~~~~~~~~DlVi~~~d~~~ 195 (467)
+ .+..+.++++|++|-|+.++.
T Consensus 67 t-~~~~~ai~~adv~~I~VpTP~ 88 (185)
T PF03721_consen 67 T-TDIEEAIKDADVVFICVPTPS 88 (185)
T ss_dssp E-SEHHHHHHH-SEEEE----EB
T ss_pred h-hhhhhhhhccceEEEecCCCc
Confidence 1 233444677999998987653
No 310
>PLN02852 ferredoxin-NADP+ reductase
Probab=92.14 E-value=0.59 Score=50.04 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=55.7
Q ss_pred hcCcEEEEcCCchHHHHHHHHHH--hcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhh--CCCcEEEE
Q 012280 92 LKSSILVIGAGGLGSPALLYLAA--CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI--NSTVHIIE 167 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~--~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~l--np~v~v~~ 167 (467)
..++|+|||+|..|.++|..|++ .|. +++|+|.... +-.+.|.-... +--..| .....+.++ ++.+++..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~-pgGlvr~gvaP--~~~~~k--~v~~~~~~~~~~~~v~~~~ 98 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPT-PFGLVRSGVAP--DHPETK--NVTNQFSRVATDDRVSFFG 98 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCC-CcceEeeccCC--CcchhH--HHHHHHHHHHHHCCeEEEc
Confidence 45689999999999999999997 454 7999997763 44455543211 111222 222222221 13444321
Q ss_pred ccccCCc-ccHHhhcCCCeEEEEcCCChh
Q 012280 168 HREALRT-SNALEILSQYEIVVDATDNAP 195 (467)
Q Consensus 168 ~~~~~~~-~~~~~~~~~~DlVi~~~d~~~ 195 (467)
+..+.. -...++...||.||.++....
T Consensus 99 -nv~vg~dvtl~~L~~~yDaVIlAtGa~~ 126 (491)
T PLN02852 99 -NVTLGRDVSLSELRDLYHVVVLAYGAES 126 (491)
T ss_pred -CEEECccccHHHHhhhCCEEEEecCCCC
Confidence 111111 123445567999999887643
No 311
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.12 E-value=0.49 Score=45.94 Aligned_cols=37 Identities=14% Similarity=0.342 Sum_probs=31.0
Q ss_pred HhhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 89 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.++++++|+|.|+ |++|..+++.|+..|.. +.++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 4578899999987 68999999999999874 7777654
No 312
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=92.11 E-value=0.93 Score=45.15 Aligned_cols=121 Identities=18% Similarity=0.223 Sum_probs=70.5
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC-
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR- 173 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~- 173 (467)
+|.+||+|-.|..++.+|.+.|. +++++|.+. +. ..+. ..|-..+....+.+. ..++-+...+..-.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~----~~--~~~~---~~g~~~~~s~~~~~~--~advVi~~v~~~~~v 69 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP----VA--DELL---SLGAVSVETARQVTE--ASDIIFIMVPDTPQV 69 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH----hH--HHHH---HcCCeecCCHHHHHh--cCCEEEEeCCChHHH
Confidence 69999999999999999999996 677887653 11 1111 233333333333332 33455544443210
Q ss_pred ------cccHHhhcCCCeEEEEcC-CChhHHHHHHHHHHHcCCcEEEEeecCc-----cceEEEEe
Q 012280 174 ------TSNALEILSQYEIVVDAT-DNAPSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYN 227 (467)
Q Consensus 174 ------~~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~l~v~~ 227 (467)
.+.....+.+=.+|||++ -++..-..+.+.+...|..++++-..|. .|++.++.
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~ 135 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMV 135 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEE
Confidence 011111223345778765 4455566677888888998988754432 45655554
No 313
>PRK05867 short chain dehydrogenase; Provisional
Probab=92.07 E-value=0.69 Score=44.39 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=28.3
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
+++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67788999997 6799999999999998 4666543
No 314
>PRK13529 malate dehydrogenase; Provisional
Probab=92.05 E-value=0.73 Score=49.59 Aligned_cols=111 Identities=15% Similarity=0.204 Sum_probs=68.6
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHH----hcC------CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHh
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAA----CGV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS 158 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~----~Gv------g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~ 158 (467)
.+|++.+|+++|+|+.|..+|+.|+. .|+ .+|.++|.+-+-..+ ..++...|..-++.
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~--------r~~l~~~k~~fa~~---- 358 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD--------MPDLLDFQKPYARK---- 358 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC--------CCcchHHHHHHhhh----
Confidence 58889999999999999999999987 599 599999987432111 11222223222221
Q ss_pred hCCCcEEEEccccCCcccHHhhcCCC--eEEEEcCCC--hhHHHHHHHHHHHcCCcEEEE
Q 012280 159 INSTVHIIEHREALRTSNALEILSQY--EIVVDATDN--APSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 159 lnp~v~v~~~~~~~~~~~~~~~~~~~--DlVi~~~d~--~~~r~~i~~~~~~~~~p~i~~ 214 (467)
.++.... ...-...+..+.++.. |++|.++.. .=+...|...+.....|+|.+
T Consensus 359 ~~~~~~~---~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 415 (563)
T PRK13529 359 REELADW---DTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFP 415 (563)
T ss_pred ccccccc---ccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 1211000 0000112456666665 999987753 235667777777777898876
No 315
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.03 E-value=0.49 Score=52.09 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=62.2
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
+.+|+|+|.|.+|..+++.|...|+. ++++|.|.- +++.+ ++.. ..++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~-------------------~v~~~----~~~g----~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDIS-------------------AVNLM----RKYG----YKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHH-------------------HHHHH----HhCC----CeEEEeeC
Confidence 57899999999999999999999995 899998731 22222 2221 23444455
Q ss_pred CcccHHh--hcCCCeEEEEcCCChhHHHHHHHHHHHcC
Q 012280 173 RTSNALE--ILSQYEIVVDATDNAPSRYMISDCCVVLG 208 (467)
Q Consensus 173 ~~~~~~~--~~~~~DlVi~~~d~~~~r~~i~~~~~~~~ 208 (467)
+.....+ -+.++|+||.++|+......+-..+++.+
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 4433322 24689999999999988877777777754
No 316
>PLN02688 pyrroline-5-carboxylate reductase
Probab=92.03 E-value=0.8 Score=44.65 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=52.2
Q ss_pred cEEEEcCCchHHHHHHHHHHhcC---CeEEEE-eCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 95 SILVIGAGGLGSPALLYLAACGV---GRLGIV-DHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gv---g~i~lv-D~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
+|.+||+|.+|+.++..|...|. ..|.++ |.+ ..|++. +.+. .+.+.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~-------------------~~~~~~----~~~~--g~~~~---- 52 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSN-------------------PARRDV----FQSL--GVKTA---- 52 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCC-------------------HHHHHH----HHHc--CCEEe----
Confidence 69999999999999999999985 245544 211 112222 2222 23221
Q ss_pred cCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHH--HcCCcEEEE
Q 012280 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG 214 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~--~~~~p~i~~ 214 (467)
.+..+.++++|+||.|+.....+..+.++.. ..+..+|+.
T Consensus 53 ----~~~~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iIs~ 94 (266)
T PLN02688 53 ----ASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSV 94 (266)
T ss_pred ----CChHHHHhcCCEEEEEECcHHHHHHHHHHHhhcCCCCEEEEe
Confidence 1223456789999999976556666665532 234445543
No 317
>PRK07478 short chain dehydrogenase; Provisional
Probab=91.99 E-value=0.75 Score=44.11 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=28.7
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+++++++|.|+ ||+|..+++.|+..|. ++.+++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 356788999986 6799999999999998 5776654
No 318
>PRK06125 short chain dehydrogenase; Provisional
Probab=91.96 E-value=0.75 Score=44.29 Aligned_cols=36 Identities=36% Similarity=0.544 Sum_probs=30.5
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 367789999997 6799999999999998 78887654
No 319
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.96 E-value=0.89 Score=45.83 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=27.3
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+|.|+|+|++|+.++..|+..|. ++++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 59999999999999999999994 57888764
No 320
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=91.92 E-value=0.8 Score=43.62 Aligned_cols=34 Identities=32% Similarity=0.333 Sum_probs=28.8
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67889999997 6799999999999997 5766653
No 321
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.92 E-value=0.33 Score=48.68 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=29.5
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
.+|.|||+|-+|+.+|..|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 369999999999999999999997 699998764
No 322
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=91.89 E-value=0.8 Score=48.74 Aligned_cols=63 Identities=22% Similarity=0.240 Sum_probs=43.4
Q ss_pred CCCCCHHHHhhcccccccC-CCCHH-HHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 63 DYGLSPDMIYRYSRHLLLP-SFGVE-GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 63 ~~~l~~~~~~ry~Rq~~l~-~~G~~-~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
..+++-..++||.-..... .|... ....-.+++|+|||+|..|..+|..|++.|.. ++|+|..
T Consensus 109 ~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 109 FGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 3567777888886433221 11111 01122567899999999999999999999985 8888765
No 323
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.82 E-value=1 Score=43.22 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=26.8
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 93 ~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 457999986 5699999999999997 67777643
No 324
>PRK06545 prephenate dehydrogenase; Validated
Probab=91.78 E-value=0.57 Score=48.06 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=27.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+|.|||+|.+|..+++.|.+.|. .+.++|.|
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~ 32 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYD 32 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 369999999999999999999997 56677655
No 325
>PRK12862 malic enzyme; Reviewed
Probab=91.76 E-value=0.46 Score=53.43 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=46.5
Q ss_pred HHHhhcccccccCCCCHHH------------------HHhhhcCcEEEEcCCchHHHHHHHHHHhcCC--eEEEEeCCc
Q 012280 69 DMIYRYSRHLLLPSFGVEG------------------QSNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV 127 (467)
Q Consensus 69 ~~~~ry~Rq~~l~~~G~~~------------------q~~L~~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~ 127 (467)
+-.+||...+.+|-|..+- -++|++.||+|+|+|+.|..+++.|...|+. +|.++|..-
T Consensus 151 ~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G 229 (763)
T PRK12862 151 YIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKG 229 (763)
T ss_pred HHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence 3447887776555464321 1688999999999999999999999999995 899999654
No 326
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.71 E-value=0.22 Score=49.43 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=26.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
+|+|+|+|++|+.+|..|+..|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999985 4777764
No 327
>PRK06949 short chain dehydrogenase; Provisional
Probab=91.71 E-value=0.76 Score=44.01 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=28.6
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
+.+++|+|.|+ |++|..+++.|++.|. ++.+++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 66789999996 7799999999999998 5766654
No 328
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=91.68 E-value=0.83 Score=52.88 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=55.1
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHH---HHHhhCCCcEEEEc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA---TCRSINSTVHIIEH 168 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~---~l~~lnp~v~v~~~ 168 (467)
..++|+|||+|..|..+|.+|++.|. +++|+|... .+.-+.-+.-.+.-.+| +.+.+ .++++ .+++..-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~rlp~-~vi~~~i~~l~~~--Gv~f~~n 376 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEFRLPN-QLIDDVVEKIKLL--GGRFVKN 376 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCCcChH-HHHHHHHHHHHhh--cCeEEEe
Confidence 57999999999999999999999998 599998642 12222112111222233 23333 34443 3444321
Q ss_pred cccCCc-ccHHhhcC-CCeEEEEcCCCh
Q 012280 169 REALRT-SNALEILS-QYEIVVDATDNA 194 (467)
Q Consensus 169 ~~~~~~-~~~~~~~~-~~DlVi~~~d~~ 194 (467)
. .+.. -...++.+ +||.||.+|...
T Consensus 377 ~-~vG~dit~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 377 F-VVGKTATLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred E-EeccEEeHHHhccccCCEEEEeCCCC
Confidence 1 1111 12334444 699999998763
No 329
>PRK09330 cell division protein FtsZ; Validated
Probab=91.66 E-value=1.8 Score=44.72 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=70.2
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCC--eEEEEeCCc--cCccccccccccCCCc---cCC-chhHHHHHHHHhhCCC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV--VELNNMHRQVIHTEPY---IGQ-SKVKSAAATCRSINST 162 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~--V~~sNl~Rq~l~~~~d---iG~-~K~~~~~~~l~~lnp~ 162 (467)
....+|.|||+||-|+.++.+|...|+. .+..++.|. ++.+...+-++..+.- .|- ...+..++...+.
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe~G~~aaee~--- 87 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEES--- 87 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHHHHHHHHHHH---
Confidence 4467899999999999999999999975 567777776 4444444444333211 010 1112222222111
Q ss_pred cEEEEccccCCcccHHhhcCCCeEEEEc------CCChhHHHHHHHHHHHcCCcEEEEee--cCccceE
Q 012280 163 VHIIEHREALRTSNALEILSQYEIVVDA------TDNAPSRYMISDCCVVLGKPLVSGAA--LGLEGQL 223 (467)
Q Consensus 163 v~v~~~~~~~~~~~~~~~~~~~DlVi~~------~d~~~~r~~i~~~~~~~~~p~i~~~~--~g~~G~l 223 (467)
.+...+.++++|+|+-+ |.+-.+. .|.+++++.+++.+..-+ +.++|..
T Consensus 88 -----------~e~I~~~l~~~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltvaVvt~PF~fEG~~ 144 (384)
T PRK09330 88 -----------REEIREALEGADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTVAVVTKPFSFEGKK 144 (384)
T ss_pred -----------HHHHHHHHcCCCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEEEEEecCccccchh
Confidence 12234556788988754 3444444 789999999987776543 3344543
No 330
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=91.58 E-value=0.92 Score=44.16 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=30.0
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467888999986 7799999999999998 57777643
No 331
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.58 E-value=1 Score=42.95 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=28.1
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
|++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 67889999986 6799999999999986 5666654
No 332
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=91.58 E-value=0.75 Score=38.89 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=47.3
Q ss_pred cCCchHHHHHHHHHHh----cCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCCcc
Q 012280 100 GAGGLGSPALLYLAAC----GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTS 175 (467)
Q Consensus 100 G~GglGs~va~~La~~----Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~~~ 175 (467)
|+|.+|+.+++.|... ++.-..|.|.+.. ... + ......... ...
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~----------~~~-~-----------~~~~~~~~~---------~~~ 49 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSML----------ISK-D-----------WAASFPDEA---------FTT 49 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEE----------EET-T-----------HHHHHTHSC---------EES
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCch----------hhh-h-----------hhhhccccc---------ccC
Confidence 8999999999999876 4555566665410 000 0 111111100 112
Q ss_pred cHHhhcC--CCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEee
Q 012280 176 NALEILS--QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (467)
Q Consensus 176 ~~~~~~~--~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~ 216 (467)
+..+++. ..|+||+|+........+. .+.+.|+.+|.++.
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~~~~~-~~L~~G~~VVt~nk 91 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVAEYYE-KALERGKHVVTANK 91 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHHHHHH-HHHHTTCEEEES-H
T ss_pred CHHHHhcCcCCCEEEECCCchHHHHHHH-HHHHCCCeEEEECH
Confidence 3345555 7999999988766554443 56678999998643
No 333
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=91.53 E-value=1.4 Score=43.25 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=25.2
Q ss_pred cEEEEcC-CchHHHHHHHHHHhcC-CeEEEEeC
Q 012280 95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVDH 125 (467)
Q Consensus 95 ~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~ 125 (467)
+|+|.|+ |.+|..+++.|...|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899996 7799999999999874 46777764
No 334
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.50 E-value=0.96 Score=42.93 Aligned_cols=33 Identities=36% Similarity=0.446 Sum_probs=27.3
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEe
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD 124 (467)
+++++|+|.|+ |++|..+++.|+..|.. +.+++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEe
Confidence 56789999996 78999999999999974 55554
No 335
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.49 E-value=1.4 Score=44.16 Aligned_cols=34 Identities=35% Similarity=0.455 Sum_probs=29.5
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 3679999999999999999999999987777754
No 336
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=91.47 E-value=1.3 Score=43.66 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=60.1
Q ss_pred cEEEEcCCc-hHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 95 SILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 95 ~VlvvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
+|+|+|++| ||.++.+.|. +-..+.-.|...++ -.-.+.+.+.+++..|++-|++-...
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~D----------------itd~~~v~~~i~~~~PDvVIn~AAyt-- 61 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAELD----------------ITDPDAVLEVIRETRPDVVINAAAYT-- 61 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCcccc----------------ccChHHHHHHHHhhCCCEEEECcccc--
Confidence 499999888 9999999998 44455555544322 23456788888999998877643211
Q ss_pred cccHHhhcCCCeEEEEcCCChhHHHH--------HHHHHHHcCCcEEEEeec
Q 012280 174 TSNALEILSQYEIVVDATDNAPSRYM--------ISDCCVVLGKPLVSGAAL 217 (467)
Q Consensus 174 ~~~~~~~~~~~DlVi~~~d~~~~r~~--------i~~~~~~~~~p~i~~~~~ 217 (467)
-|-.|-.+++..+. |.++|.+.|.++|..|+.
T Consensus 62 ------------~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTD 101 (281)
T COG1091 62 ------------AVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTD 101 (281)
T ss_pred ------------ccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecc
Confidence 11123344443333 557899999999988765
No 337
>PLN02206 UDP-glucuronate decarboxylase
Probab=91.44 E-value=1.1 Score=47.47 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=28.4
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
+-+++||+|.|+ |-+|+.+++.|...|. ++..+|.
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 446688999996 6699999999999997 4666664
No 338
>PRK09186 flagellin modification protein A; Provisional
Probab=91.43 E-value=0.9 Score=43.43 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=27.1
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEe
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD 124 (467)
+++++|+|.|+ |++|..+|+.|+..|.. +.+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence 46788999996 67999999999999974 65554
No 339
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.43 E-value=0.95 Score=47.44 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=32.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMH 134 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~ 134 (467)
.+|.|||+|-+|.++|..|+..|. +++.+|.|.-....++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~ 43 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTIN 43 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHH
Confidence 679999999999999999999995 6888887553333333
No 340
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=91.39 E-value=1.2 Score=46.73 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=29.6
Q ss_pred HHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeE
Q 012280 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRL 120 (467)
Q Consensus 88 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i 120 (467)
...|++++|+|||+|..|..-|.+|--+|+..+
T Consensus 31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred hHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 478999999999999999999999999999644
No 341
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.37 E-value=0.51 Score=46.59 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=27.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+|.|||+|.+|..++..|...|. ++.++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999986 68888764
No 342
>PRK06139 short chain dehydrogenase; Provisional
Probab=91.33 E-value=0.72 Score=46.70 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=29.4
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+.+++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467789999997 6799999999999997 4777654
No 343
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=91.30 E-value=1.2 Score=44.44 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=66.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
.+|.|||+|-+|..++.+|++.|. +++++|.+.-....+. ..|...+....+.++ ..++-+...+....
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~--------~~g~~~~~s~~~~~~--~aDvVi~~vp~~~~ 70 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALV--------DKGATPAASPAQAAA--GAEFVITMLPNGDL 70 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHH--------HcCCcccCCHHHHHh--cCCEEEEecCCHHH
Confidence 379999999999999999999996 6888876532211111 112222222222222 12343433333210
Q ss_pred -c------ccHHhhcCCCeEEEEcC-CChhHHHHHHHHHHHcCCcEEEEeecCc-----cceEEEEe
Q 012280 174 -T------SNALEILSQYEIVVDAT-DNAPSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYN 227 (467)
Q Consensus 174 -~------~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~l~v~~ 227 (467)
. +.....++.-.+|||++ -.+.....+.+.....++.++++-..|. .|.+.++.
T Consensus 71 ~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~ 137 (296)
T PRK15461 71 VRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLA 137 (296)
T ss_pred HHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEE
Confidence 0 11122233334666654 4444555566667777888887655432 35555443
No 344
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.29 E-value=0.98 Score=47.66 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=55.5
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
...|+|+|.|+.|-.+|+.|...|. +++..|...- . ...+.|++.++.+.+.. ...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~-------------------~--~~~~~l~~~~~g~~~~~--~~~ 61 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSREQ-------------------P--PGLDTLAREFPDVELRC--GGF 61 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCCC-------------------c--hhHHHHHhhcCCcEEEe--CCC
Confidence 4679999999999999999999997 5888774320 0 01122444344554432 111
Q ss_pred CcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEE
Q 012280 173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (467)
Q Consensus 173 ~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~ 213 (467)
. .+.+.++|+||-...-++.... -..++..++|+++
T Consensus 62 ~----~~~~~~~d~vV~sp~i~~~~p~-~~~a~~~~i~i~~ 97 (448)
T PRK03803 62 D----CELLVQASEIIISPGLALDTPA-LRAAAAMGIEVIG 97 (448)
T ss_pred C----hHHhcCCCEEEECCCCCCCCHH-HHHHHHCCCcEEE
Confidence 1 2334678999876543332222 2345667777775
No 345
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=91.29 E-value=0.9 Score=47.90 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=70.2
Q ss_pred cEEEEcCCch-HHHHHHHHHH----hcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 95 SILVIGAGGL-GSPALLYLAA----CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 95 ~VlvvG~Ggl-Gs~va~~La~----~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
||.|||+|+. +-.+...|+. .++++|.|+|-|. ..|.+ =...+++..++.++.++|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~Tt 66 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVYTT 66 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEEC
Confidence 7999999996 3355666653 4578999999764 11111 1124455556667777776653
Q ss_pred ccCCcccHHhhcCCCeEEEEcC--CChhHHHHHHHHHHHcCCcEEEEeecCccceE
Q 012280 170 EALRTSNALEILSQYEIVVDAT--DNAPSRYMISDCCVVLGKPLVSGAALGLEGQL 223 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~--d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l 223 (467)
+-.+.++++|+||... +..+.|..-.++..++|+ +...+.|..|..
T Consensus 67 ------dr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~ 114 (437)
T cd05298 67 ------DPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFA 114 (437)
T ss_pred ------CHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHH
Confidence 3456789999999765 444667766778999996 544666666643
No 346
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.27 E-value=0.81 Score=45.35 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=28.7
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+.+++|+|.|+ ||+|..+++.|+..|. ++.+++.
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 356678999996 7899999999999997 5777654
No 347
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=91.26 E-value=0.77 Score=46.27 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=27.2
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEE
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGI 122 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~l 122 (467)
|++++|.|||+|..|..++++|..+|+. +.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv 31 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIV 31 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEE
Confidence 5789999999999999999999999983 444
No 348
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.26 E-value=1.3 Score=46.84 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=42.3
Q ss_pred CCCCCHHHHhhcccccccCCCCHH---HHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 63 DYGLSPDMIYRYSRHLLLPSFGVE---GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 63 ~~~l~~~~~~ry~Rq~~l~~~G~~---~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
..+++--.++||--.... ..|.. ....-...+|+|||.|..|..+|..|++.|. +++|+|..
T Consensus 101 ~~~v~i~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 101 GKPVSIGALERFVADWER-QHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCccHHHHHHHHHhHHH-hcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 346777777777642211 01110 0112356789999999999999999999997 59999964
No 349
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.24 E-value=0.78 Score=43.98 Aligned_cols=35 Identities=37% Similarity=0.525 Sum_probs=29.0
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r 39 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL 39 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence 356788999997 7799999999999998 4667654
No 350
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.22 E-value=0.84 Score=45.26 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=27.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+|.|||+|.+|..++..|++.|. ++.++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999996 46677654
No 351
>PRK06194 hypothetical protein; Provisional
Probab=91.15 E-value=1.1 Score=43.74 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=28.9
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~ 39 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQ 39 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45678999985 6799999999999997 57887653
No 352
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.15 E-value=0.5 Score=47.78 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=51.0
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcC-C-----eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhC-CCcEE
Q 012280 94 SSILVIGA-GGLGSPALLYLAACGV-G-----RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STVHI 165 (467)
Q Consensus 94 ~~VlvvG~-GglGs~va~~La~~Gv-g-----~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~ln-p~v~v 165 (467)
.||.|||+ |.+|+.+|..|+..|+ + +|.|+|-.. .+.|++..+.-|.... |...
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~- 65 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLA- 65 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccC-
Confidence 47999998 9999999999999887 4 688886421 1234444444455444 3221
Q ss_pred EEccccCCcccHHhhcCCCeEEEEcCCCh
Q 012280 166 IEHREALRTSNALEILSQYEIVVDATDNA 194 (467)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~DlVi~~~d~~ 194 (467)
...+. ....+.++++|+||-+.+.+
T Consensus 66 ---~~~i~-~~~~~~~~daDvVVitAG~~ 90 (323)
T TIGR01759 66 ---GVVAT-TDPEEAFKDVDAALLVGAFP 90 (323)
T ss_pred ---CcEEe-cChHHHhCCCCEEEEeCCCC
Confidence 11122 23346678999999877653
No 353
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.13 E-value=0.38 Score=47.46 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=54.2
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcC---CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gv---g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
+.+|.+||+|-+|..++..|...|. .+|.+.|.+ ..|++.+++ +. .++ ..
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~~l~~---~~--g~~--~~- 54 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLKNASD---KY--GIT--IT- 54 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHHHHHH---hc--CcE--Ee-
Confidence 3579999999999999999999885 245554432 112222221 12 122 11
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHH--HcCCcEEEE
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG 214 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~--~~~~p~i~~ 214 (467)
.+..+.++++|+||-|+-......++.++.- +.+.-+|+.
T Consensus 55 -----~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi 96 (272)
T PRK12491 55 -----TNNNEVANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTI 96 (272)
T ss_pred -----CCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEe
Confidence 1223456789999999886566666666542 233445554
No 354
>PTZ00188 adrenodoxin reductase; Provisional
Probab=91.05 E-value=1.1 Score=47.79 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=58.8
Q ss_pred hcCcEEEEcCCchHHHHHHHHH-HhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhh--CCCcEEEEc
Q 012280 92 LKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI--NSTVHIIEH 168 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~l--np~v~v~~~ 168 (467)
+.++|+|||+|..|.++|.+|+ ..|+ +++|+|....-- =+.|.-... | .++.....+.+... ++.+++. .
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~GVaP--d--h~~~k~v~~~f~~~~~~~~v~f~-g 110 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRYGVAP--D--HIHVKNTYKTFDPVFLSPNYRFF-G 110 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEEeCCC--C--CccHHHHHHHHHHHHhhCCeEEE-e
Confidence 4678999999999999999876 5565 599988765443 233332221 1 13444554554432 3555543 2
Q ss_pred cccCCc-ccHHhhcCCCeEEEEcCCCh
Q 012280 169 REALRT-SNALEILSQYEIVVDATDNA 194 (467)
Q Consensus 169 ~~~~~~-~~~~~~~~~~DlVi~~~d~~ 194 (467)
+..+.. -...++...||.||.++...
T Consensus 111 nv~VG~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 111 NVHVGVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence 223322 23455667899999998865
No 355
>PRK06392 homoserine dehydrogenase; Provisional
Probab=91.03 E-value=0.98 Score=45.75 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=53.3
Q ss_pred cEEEEcCCchHHHHHHHHHH------hcC--CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEE
Q 012280 95 SILVIGAGGLGSPALLYLAA------CGV--GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII 166 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~------~Gv--g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~ 166 (467)
+|+|+|+|.+|+.+++.|.. .|. .-+.+.|... .++.+..+...+ +.+...+ . .+.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g---------~l~~~~Gldl~~---l~~~~~~-g---~l~ 65 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKL---------SYYNERGLDIGK---IISYKEK-G---RLE 65 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCC---------cccCCcCCChHH---HHHHHhc-C---ccc
Confidence 79999999999999999976 233 3344555432 223222222212 2222221 1 011
Q ss_pred Ecc-ccCCcccHHhhc-CCCeEEEEcCCChhH---HHHHHHHHHHcCCcEEEEe
Q 012280 167 EHR-EALRTSNALEIL-SQYEIVVDATDNAPS---RYMISDCCVVLGKPLVSGA 215 (467)
Q Consensus 167 ~~~-~~~~~~~~~~~~-~~~DlVi~~~d~~~~---r~~i~~~~~~~~~p~i~~~ 215 (467)
.+. ..++ ..+++ .++|+||+|+.+... -+.+-..+.+.|+.+|.++
T Consensus 66 ~~~~~~~~---~~~ll~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaN 116 (326)
T PRK06392 66 EIDYEKIK---FDEIFEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTAN 116 (326)
T ss_pred cCCCCcCC---HHHHhcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCC
Confidence 111 0111 12222 468999999953211 1223356778889888764
No 356
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=91.01 E-value=0.29 Score=49.15 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=29.4
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcC-CeEEEEeCC
Q 012280 94 SSILVIGA-GGLGSPALLYLAACGV-GRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D 126 (467)
.||.|+|+ |.+|+.++..|+..|+ +++.++|.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence 47999998 9999999999999997 479999974
No 357
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.00 E-value=0.62 Score=46.86 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=48.9
Q ss_pred cEEEEcC-CchHHHHHHHHHHhcC-CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 95 ~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
||.|||+ |.+|+.+|..|+..|+ .+|.|+|-. |++..+.-|..-.+.+.+....
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~---------------------~a~g~alDL~~~~~~~~i~~~~--- 57 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV---------------------NTPGVAADLSHINTPAKVTGYL--- 57 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC---------------------ccceeehHhHhCCCcceEEEec---
Confidence 7999999 9999999999998887 689999864 1111111122222334444321
Q ss_pred CcccHHhhcCCCeEEEEcCCCh
Q 012280 173 RTSNALEILSQYEIVVDATDNA 194 (467)
Q Consensus 173 ~~~~~~~~~~~~DlVi~~~d~~ 194 (467)
..++..+.++++|+||-+...+
T Consensus 58 ~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 58 GPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CCCchHHhcCCCCEEEEeCCCC
Confidence 1112245678999999887764
No 358
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=90.93 E-value=2.1 Score=41.80 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=33.4
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
..|+.++|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~ 71 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSK 71 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 46788999999999999999999999998777787743
No 359
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=90.91 E-value=2.1 Score=42.03 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=52.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHh-cCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 94 SSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
.||.|+|+|.+|..+++.|... ++.-..+++.+. +.+...+.+. ..+.+ +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~--------------------~~~~~~~~~~---~~~~~--~---- 52 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEH--------------------SIDAVRRALG---EAVRV--V---- 52 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCC--------------------CHHHHhhhhc---cCCee--e----
Confidence 3799999999999999999875 343333333210 0111111111 11111 1
Q ss_pred CcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEee
Q 012280 173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (467)
Q Consensus 173 ~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~ 216 (467)
.+..++-.+.|+|++|+.+... ..+...+.+.|++++..+.
T Consensus 53 --~d~~~l~~~~DvVve~t~~~~~-~e~~~~aL~aGk~Vvi~s~ 93 (265)
T PRK13303 53 --SSVDALPQRPDLVVECAGHAAL-KEHVVPILKAGIDCAVISV 93 (265)
T ss_pred --CCHHHhccCCCEEEECCCHHHH-HHHHHHHHHcCCCEEEeCh
Confidence 1122222458999999987655 3455567788999986543
No 360
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=90.90 E-value=1 Score=43.29 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=29.8
Q ss_pred HhhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 89 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.++++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 3577899999985 7799999999999998 5777654
No 361
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=90.89 E-value=0.27 Score=51.60 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEE
Q 012280 257 GVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRI 298 (467)
Q Consensus 257 g~~~~v~g~l~A~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~ 298 (467)
-|+++++|+++|+|+||+++...-|+.| .++||+.+++..+
T Consensus 384 ~~~~~~~gg~~aqE~iK~~t~q~vp~~n-~~i~dg~~~~s~~ 424 (425)
T cd01493 384 HNISAFMGGIAAQEVIKLITKQYVPIDN-TFIFDGIRSKSAT 424 (425)
T ss_pred chHHHHHhHHHHHHHHHHHhccccccCC-ceEEeccccceec
Confidence 5788999999999999999999888754 7889999877554
No 362
>PRK08339 short chain dehydrogenase; Provisional
Probab=90.84 E-value=0.87 Score=44.22 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=29.1
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
|+++.++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN 41 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67788999986 5799999999999997 57777643
No 363
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=90.83 E-value=0.62 Score=48.06 Aligned_cols=106 Identities=14% Similarity=0.168 Sum_probs=60.5
Q ss_pred cCHHHHHHHhc---cCCCeEEEEecCcccccccCCCCceecCchhhhccchhhHHhhhhhhh---h--cCCCCCCCCeEE
Q 012280 351 ISSKEYKEKVV---NGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEE---H--RGSNASSGSNLY 422 (467)
Q Consensus 351 Is~~e~~~~l~---~~~~~~lIDVR~~~ef~~~hIpgSinIP~~~l~~~~~~l~~~~~~~~~---~--~~~~~~~~~~Iv 422 (467)
||+-|+.+.-+ .+-++.+||+||.++|+.||+-.|.|+.-.-+.+...++.-.+..... + +..+...+..+-
T Consensus 309 isv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlc 388 (669)
T KOG3636|consen 309 ISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLC 388 (669)
T ss_pred hhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEE
Confidence 66666644321 124577999999999999999999998766555543333322221111 0 011112234444
Q ss_pred EEcCCCh-----hHHHHHHHHHHcCCCCeEEccccHHHHh
Q 012280 423 VVCRRGN-----DSQRAVQALHKLGFTSARDIIGGLESWA 457 (467)
Q Consensus 423 vvCr~G~-----~S~~A~~~L~~~G~~~v~~l~GGl~aW~ 457 (467)
++ .+|- --......+.+.+-..|..+.||+.+.+
T Consensus 389 fm-GsGr~EED~YmnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 389 FM-GSGRDEEDNYMNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred Ee-ccCcchHHHHHHHHHHHHHhcCceEEEEecchHHHHH
Confidence 44 3342 2333444444555556889999998766
No 364
>PRK07035 short chain dehydrogenase; Provisional
Probab=90.82 E-value=1.1 Score=42.69 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=29.2
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.|++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r 40 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSR 40 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 367788999985 5699999999999997 6877765
No 365
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.76 E-value=1.2 Score=43.11 Aligned_cols=35 Identities=34% Similarity=0.483 Sum_probs=29.8
Q ss_pred hhcCcEEEEcCC-chHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~G-glGs~va~~La~~Gvg~i~lvD~D 126 (467)
+++++|+|.|++ ++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 677889999865 599999999999998 78887754
No 366
>PLN02780 ketoreductase/ oxidoreductase
Probab=90.73 E-value=0.96 Score=45.55 Aligned_cols=62 Identities=26% Similarity=0.286 Sum_probs=43.4
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 92 ~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
.++.|+|.|+ ||+|.++|+.|+..|. ++.+++.+. .|.+.+++.+++.++..++..+..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~~~ 111 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIKTVVV 111 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEEEEEE
Confidence 4678999996 6799999999999998 577776431 255566677776666555555544
Q ss_pred cCC
Q 012280 171 ALR 173 (467)
Q Consensus 171 ~~~ 173 (467)
+++
T Consensus 112 Dl~ 114 (320)
T PLN02780 112 DFS 114 (320)
T ss_pred ECC
Confidence 443
No 367
>PRK08818 prephenate dehydrogenase; Provisional
Probab=90.72 E-value=0.99 Score=46.52 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=28.1
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
+.+.+|+|||. |-+|..+++.|....-.+|+.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 45678999999 999999999999753335777775
No 368
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.70 E-value=1.5 Score=47.04 Aligned_cols=89 Identities=22% Similarity=0.343 Sum_probs=56.6
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
.+++|+|+|+|..|..+++.|...|. ++++.|... .+ . +.+++. .+.+. ...
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------------------~~---~-~~l~~~--g~~~~--~~~ 62 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------------------DA---L-RPHAER--GVATV--STS 62 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HH---H-HHHHhC--CCEEE--cCc
Confidence 56799999999999999999999996 677777321 01 1 113332 23322 111
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEE
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~ 213 (467)
...+.++.+|+||.+..-+..... -..+++.++|+++
T Consensus 63 ----~~~~~l~~~D~VV~SpGi~~~~p~-~~~a~~~gi~v~~ 99 (488)
T PRK03369 63 ----DAVQQIADYALVVTSPGFRPTAPV-LAAAAAAGVPIWG 99 (488)
T ss_pred ----chHhHhhcCCEEEECCCCCCCCHH-HHHHHHCCCcEee
Confidence 112345678999988765544333 3456778888885
No 369
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.68 E-value=1.3 Score=45.24 Aligned_cols=33 Identities=39% Similarity=0.563 Sum_probs=28.5
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
..+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 578999999999999988888899987877764
No 370
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.66 E-value=0.27 Score=49.30 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=28.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.||+|+|+|++|+.++-+|+++|. .+++++..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 479999999999999999999996 68888874
No 371
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=90.60 E-value=1.3 Score=47.91 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=68.2
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHH-----hcC------CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHH
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAA-----CGV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR 157 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~-----~Gv------g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~ 157 (467)
.+|++.||+++|+|+.|..+|+.|.. .|+ ++|.++|.+-+-..+ | .+++-..|..-++.
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence 68999999999999999999999987 477 699999987432111 0 00122233333322
Q ss_pred hhCCCcEEEEccccCCcccHHhhcCC--CeEEEEcCCC--hhHHHHHHHHHHHcCCcEEEE
Q 012280 158 SINSTVHIIEHREALRTSNALEILSQ--YEIVVDATDN--APSRYMISDCCVVLGKPLVSG 214 (467)
Q Consensus 158 ~lnp~v~v~~~~~~~~~~~~~~~~~~--~DlVi~~~d~--~~~r~~i~~~~~~~~~p~i~~ 214 (467)
.+. ..+..+.++. .|++|.++.- .-+...|...+.....|+|.+
T Consensus 387 --~~~-----------~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFa 434 (581)
T PLN03129 387 --HEP-----------GASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFA 434 (581)
T ss_pred --ccc-----------CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 110 1345667776 8999987742 335667777777778898876
No 372
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=90.58 E-value=0.38 Score=49.87 Aligned_cols=43 Identities=23% Similarity=0.502 Sum_probs=35.0
Q ss_pred cCcEEEEcCCchHHHHHHHHHHh-cCCeEEEEeCCccCcccccc
Q 012280 93 KSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHR 135 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R 135 (467)
...|+|||+|-+|+.+|..|++. |..+++|+|.+.+-...-.|
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~ 73 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGR 73 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCccccc
Confidence 45799999999999999999985 88789999988765433333
No 373
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=90.57 E-value=2.7 Score=40.35 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=26.8
Q ss_pred HhhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEE
Q 012280 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIV 123 (467)
Q Consensus 89 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lv 123 (467)
+....++|+|+|+ |++|..+++.|+..|.. ++.+
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~ 47 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAG 47 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEE
Confidence 4455789999996 77999999999998864 4443
No 374
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=90.57 E-value=0.43 Score=51.32 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=29.0
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
-++|.|||+|..|+.+|.+|+.+|.. ++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCC
Confidence 46799999999999999999999974 7888765
No 375
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=90.57 E-value=1.5 Score=43.59 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=26.4
Q ss_pred cEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 95 ~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+|+|.|+ |.+|+.+++.|+..|. ++.++|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 6999985 7799999999999995 68887754
No 376
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.55 E-value=0.95 Score=49.32 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=50.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
+.+|+|+|+|.+|..+++.|...|.. +.+||.|.- |++.++ +. .+.++..+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d~~-------------------~~~~~~----~~----g~~~i~GD~ 468 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIP-LVVIETSRT-------------------RVDELR----ER----GIRAVLGNA 468 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCC-EEEEECCHH-------------------HHHHHH----HC----CCeEEEcCC
Confidence 57899999999999999999999974 899998731 222222 21 133444555
Q ss_pred CcccHHh--hcCCCeEEEEcCCChhH
Q 012280 173 RTSNALE--ILSQYEIVVDATDNAPS 196 (467)
Q Consensus 173 ~~~~~~~--~~~~~DlVi~~~d~~~~ 196 (467)
++.+..+ -++++|.|+.++++...
T Consensus 469 ~~~~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 469 ANEEIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred CCHHHHHhcCccccCEEEEEcCChHH
Confidence 5444332 34689988777655443
No 377
>PRK06198 short chain dehydrogenase; Provisional
Probab=90.53 E-value=1 Score=43.25 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=31.6
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+++++|+|.|+ |++|..+++.|+..|..++.++|.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 467889999996 6799999999999999878888754
No 378
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=90.53 E-value=1.6 Score=44.48 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=28.0
Q ss_pred HhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEee
Q 012280 178 LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (467)
Q Consensus 178 ~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~ 216 (467)
.+++.++|+|++|+.....+... ..+.+.|+++|+.+.
T Consensus 73 ~el~~~vDVVIdaT~~~~~~e~a-~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 73 EDLLEKADIVVDATPGGVGAKNK-ELYEKAGVKAIFQGG 110 (341)
T ss_pred hHhhccCCEEEECCCchhhHHHH-HHHHHCCCEEEEcCC
Confidence 44557899999999876665444 467778899887654
No 379
>PRK06181 short chain dehydrogenase; Provisional
Probab=90.50 E-value=1.2 Score=42.84 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=26.4
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 94 ~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57999997 7799999999999996 6777764
No 380
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=90.47 E-value=0.35 Score=43.19 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=53.6
Q ss_pred cEEEEcCCchHHHHHHHHHH-hcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 95 SILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
+|+|+|+|.+|..+++.+.. .++.-+.+.| ..++..+...+-| ++--|+.+.+.- .-+-...+.-....+.
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d--~~~~~~~a~ll~~-Ds~hg~~~~~v~-----~~~~~l~i~g~~i~~~ 73 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAIND--LTDPETLAHLLKY-DSVHGRFPGEVE-----VDEDGLIVNGKKIKVL 73 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeec--CCCHHHHHHHhcc-cCCCCCCCCcEE-----EeCCEEEECCEEEEEE
Confidence 79999999999999998874 4554445554 3444444443322 334566553211 0011111111111111
Q ss_pred ccc-HHhh-c--CCCeEEEEcCCChhHHHHHHHHH
Q 012280 174 TSN-ALEI-L--SQYEIVVDATDNAPSRYMISDCC 204 (467)
Q Consensus 174 ~~~-~~~~-~--~~~DlVi~~~d~~~~r~~i~~~~ 204 (467)
.+. ..++ + .+.|+||+||..+.++.......
T Consensus 74 ~~~~p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl 108 (149)
T smart00846 74 AERDPANLPWKELGVDIVVECTGKFTTREKASAHL 108 (149)
T ss_pred ecCChHHCcccccCCeEEEeccccccchHHHHHHH
Confidence 111 1111 1 36799999999887776554433
No 381
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=90.37 E-value=1.4 Score=43.04 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=52.3
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcC---CeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gv---g~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
+.+|.|||+|-+|+.++..|...|+ .++.++|.+.- ..+ +..
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~--------------~~~-------------------~~~-- 47 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKK--------------NTP-------------------FVY-- 47 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChh--------------cCC-------------------eEE--
Confidence 4689999999999999999999884 23666554320 000 011
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHH-cCCcEEE
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVS 213 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~-~~~p~i~ 213 (467)
. .+..+.++++|+||-|+-....+.++.++... ....+|+
T Consensus 48 ---~-~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS 88 (260)
T PTZ00431 48 ---L-QSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLIS 88 (260)
T ss_pred ---e-CChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEE
Confidence 0 11223456899999998877777777766432 2344554
No 382
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=90.35 E-value=0.3 Score=52.57 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=28.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++|.|||+|..|+.+|..|+.+|. .++++|.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 579999999999999999999998 48888865
No 383
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.34 E-value=1.5 Score=36.03 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=51.1
Q ss_pred chhHHHHHHHHhhCCCcEEEEc--cccCCccc--HHhhcCCCeEEEEcCCChh--HHHHHHHHHHHcCCcEEEEeecCc
Q 012280 147 SKVKSAAATCRSINSTVHIIEH--REALRTSN--ALEILSQYEIVVDATDNAP--SRYMISDCCVVLGKPLVSGAALGL 219 (467)
Q Consensus 147 ~K~~~~~~~l~~lnp~v~v~~~--~~~~~~~~--~~~~~~~~DlVi~~~d~~~--~r~~i~~~~~~~~~p~i~~~~~g~ 219 (467)
......++.+++.+ .+...| ........ ....++++|+||..||... ....+-+.|.+.++|++.....|.
T Consensus 10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 45556677777754 555556 44444433 6778899999999999875 455688999999999998764443
No 384
>PLN02928 oxidoreductase family protein
Probab=90.31 E-value=0.23 Score=50.79 Aligned_cols=104 Identities=20% Similarity=0.204 Sum_probs=62.2
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
..|.+++|+|||.|.+|..+|+.|...|. ++..+|.-. . +.. ....|. + .+.+... .
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~-~-----~~~---~~~~~~-~-----------~~~~~~~-~ 211 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW-T-----SEP---EDGLLI-P-----------NGDVDDL-V 211 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC-C-----hhh---hhhhcc-c-----------ccccccc-c
Confidence 46899999999999999999999999998 677766420 0 000 000000 0 0000000 0
Q ss_pred cccCCcccHHhhcCCCeEEEEcC-CChhHHHHHHHHHHH---cCCcEEEEe
Q 012280 169 REALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVV---LGKPLVSGA 215 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~---~~~p~i~~~ 215 (467)
..........++++.+|+|+.+. .+..++.+|+..... .+.-+|+.+
T Consensus 212 ~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 212 DEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred cccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 00012345678889999999876 566788888765333 344466653
No 385
>PLN02253 xanthoxin dehydrogenase
Probab=90.28 E-value=1.3 Score=43.17 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=28.5
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
++++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 466788999985 6799999999999997 5777664
No 386
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=90.28 E-value=0.37 Score=49.29 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=36.6
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCcccccc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR 135 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R 135 (467)
...+|+|||.|-+|..+|.+|++.|. +++++|.+.+...+-.|
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~ 45 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGR 45 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhc
Confidence 45789999999999999999999999 99999988875544433
No 387
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=90.28 E-value=2.6 Score=40.93 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=62.0
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
..+|+|+|--+=|-.++..|...|+.-+.-+-. +.|.++ ...+..+...+
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat-----------------~~g~~~-------------~~~~~v~~G~l 51 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIVLSLAG-----------------RTGGPA-------------DLPGPVRVGGF 51 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEEEEEcc-----------------CCCCcc-------------cCCceEEECCC
Confidence 357999998888999999999998754443222 222200 11223344455
Q ss_pred -CcccHHhhc--CCCeEEEEcCCChhHHH--HHHHHHHHcCCcEEEE
Q 012280 173 -RTSNALEIL--SQYEIVVDATDNAPSRY--MISDCCVVLGKPLVSG 214 (467)
Q Consensus 173 -~~~~~~~~~--~~~DlVi~~~d~~~~r~--~i~~~~~~~~~p~i~~ 214 (467)
+.+...+++ ++.++|||+|..++... .+.++|.+.++|++--
T Consensus 52 ~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 52 GGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 444555555 36899999999988644 4778999999999853
No 388
>PRK06046 alanine dehydrogenase; Validated
Probab=90.22 E-value=1.1 Score=45.40 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=51.8
Q ss_pred hcCcEEEEcCCchHHHHHHHHH-HhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 92 LKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
...+|.|||+|+.|...+.+|. ..++..+.++|.+ ..|++.+++.+.+..+ +.+..+.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~-------------------~~~~~~~~~~~~~~~~-~~v~~~~- 186 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT-------------------KSSAEKFVERMSSVVG-CDVTVAE- 186 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-
Confidence 3477999999999999999987 4578888888654 2355666666654332 3333322
Q ss_pred cCCcccHHhhcCCCeEEEEcCCC
Q 012280 171 ALRTSNALEILSQYEIVVDATDN 193 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d~ 193 (467)
+..+.++ +|+|+.||-+
T Consensus 187 -----~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 187 -----DIEEACD-CDILVTTTPS 203 (326)
T ss_pred -----CHHHHhh-CCEEEEecCC
Confidence 3345555 9999999876
No 389
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.18 E-value=1.7 Score=44.27 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=29.3
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3678999999999999999888899988887764
No 390
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=90.18 E-value=1.2 Score=43.75 Aligned_cols=80 Identities=24% Similarity=0.324 Sum_probs=59.5
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
++.++++|-|+ +|+|-++|+.|++-|.. +.||-.+ +.|.+.+++.|+..+ .++++.++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLvaR~-------------------~~kL~~la~~l~~~~-~v~v~vi~ 62 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYN-LILVARR-------------------EDKLEALAKELEDKT-GVEVEVIP 62 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCc-------------------HHHHHHHHHHHHHhh-CceEEEEE
Confidence 46788999996 67999999999999985 5555321 358888999999888 78888888
Q ss_pred ccCCcccHHhhc--------CCCeEEEEcC
Q 012280 170 EALRTSNALEIL--------SQYEIVVDAT 191 (467)
Q Consensus 170 ~~~~~~~~~~~~--------~~~DlVi~~~ 191 (467)
.+++..+..+.+ ...|++|.+.
T Consensus 63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 63 ADLSDPEALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred CcCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence 888764432221 1477777664
No 391
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=90.17 E-value=0.76 Score=47.19 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCC----CCCCCCCCCCCCCHHHHh
Q 012280 13 VLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNG----SYRPSSAVDYGLSPDMIY 72 (467)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~ 72 (467)
-..+|+.|++|+..|+.++.+|+++|+..+...+...+..+. ...|.....+.|++++..
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~ 86 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDAT 86 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHH
Confidence 357889999999999999999999998776544321111111 112333457889999883
No 392
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.16 E-value=1.1 Score=44.62 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=51.8
Q ss_pred HHhhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEE
Q 012280 88 QSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII 166 (467)
Q Consensus 88 q~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~ 166 (467)
+..|++++++|.|+ ||+|..+++.|+..|. ++.++|... ..+++.+++.++... .++.
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~------------------~~~~~~~~~~i~~~g--~~~~ 65 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVAS------------------ALDASDVLDEIRAAG--AKAV 65 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCc------------------hhHHHHHHHHHHhcC--CeEE
Confidence 34577889999986 5699999999999998 466665421 123445555565543 3444
Q ss_pred EccccCCcc-cHHhh------cCCCeEEEEcCC
Q 012280 167 EHREALRTS-NALEI------LSQYEIVVDATD 192 (467)
Q Consensus 167 ~~~~~~~~~-~~~~~------~~~~DlVi~~~d 192 (467)
.+..+++.. ....+ +...|+||.+..
T Consensus 66 ~~~~Dv~d~~~~~~~~~~~~~~g~iD~li~nAG 98 (306)
T PRK07792 66 AVAGDISQRATADELVATAVGLGGLDIVVNNAG 98 (306)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 555555431 11111 356788887653
No 393
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=90.12 E-value=1.6 Score=46.09 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=28.1
Q ss_pred hhcCcEEEEcCCc-hHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~Gg-lGs~va~~La~~Gvg~i~lvD~D 126 (467)
-+..||+|.|+.| +|+.+++.|...|. ++..+|.+
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3456899999654 99999999999986 57777754
No 394
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=90.09 E-value=1.8 Score=46.01 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=41.8
Q ss_pred CCCCHHHHhhcccccccC-CC-CHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 64 YGLSPDMIYRYSRHLLLP-SF-GVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~-~~-G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+++-..++||.-..... .| .......-..++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 112 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 112 GPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 467777778876432210 01 1000112245789999999999999999999998 59999864
No 395
>PRK06523 short chain dehydrogenase; Provisional
Probab=90.06 E-value=0.99 Score=43.37 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=31.4
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence 477889999996 6899999999999998 588887753
No 396
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.01 E-value=1.1 Score=42.40 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=26.0
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeE
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRL 120 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i 120 (467)
.|.+++|+|+|+ |++|..+++.|+..|...+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~ 33 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVV 33 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence 366789999986 7899999999999997533
No 397
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=90.01 E-value=2.7 Score=43.65 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=26.5
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 92 ~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
+..+|+|+|+ |.+|+.+++.|...|. ++.+++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R 92 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR 92 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence 4458999997 6699999999999986 4666654
No 398
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.99 E-value=1.7 Score=41.72 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=30.4
Q ss_pred hhhcCcEEEEcCC---chHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~G---glGs~va~~La~~Gvg~i~lvD~D 126 (467)
+|+.++|+|.|++ |+|..+++.|+..|. ++.+++..
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 4567889999985 799999999999997 68887654
No 399
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=89.94 E-value=1.5 Score=41.95 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=30.3
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++.+++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 367889999986 5699999999999997 68887764
No 400
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.92 E-value=0.89 Score=46.03 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=28.4
Q ss_pred hcCcEEEEcCCchHHHHHHHHHH-hcCCeEEEEeCC
Q 012280 92 LKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHD 126 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~-~Gvg~i~lvD~D 126 (467)
...+|+|+|+|++|..++..+.+ .|..+++++|.+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~ 198 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKH 198 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence 35789999999999998888876 577778887753
No 401
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=89.92 E-value=1 Score=45.91 Aligned_cols=91 Identities=13% Similarity=0.224 Sum_probs=53.3
Q ss_pred cEEEEcCCc-hHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 95 SILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 95 ~VlvvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
+|+|||+.| +|.++++.|...|...+.|+ ++.+..+.|+.=. + ....+...+ ++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~-------------~~as~~~~g~~~~---------~-~~~~~~~~~--~~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLV-------------LLASDRSAGRKVT---------F-KGKELEVNE--AK 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEE-------------EEeccccCCCeee---------e-CCeeEEEEe--CC
Confidence 689999655 89999999998665533332 1122223333110 0 011111111 11
Q ss_pred cccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEe
Q 012280 174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (467)
Q Consensus 174 ~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~ 215 (467)
. +.+.++|+||.|+.+..++.+...+ ...|..+|+.+
T Consensus 56 ---~-~~~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VID~s 92 (339)
T TIGR01296 56 ---I-ESFEGIDIALFSAGGSVSKEFAPKA-AKCGAIVIDNT 92 (339)
T ss_pred ---h-HHhcCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 2 2347899999999998777665543 55677788754
No 402
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=89.91 E-value=0.34 Score=52.41 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=31.0
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
+++++|+|+|+||+|..++..|+..|+ ++.+++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 567899999999999999999999999 8998864
No 403
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.89 E-value=0.77 Score=45.81 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=55.3
Q ss_pred hhhcCcEEEEc-CCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 90 ~L~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
.+++++|+||| .|-+|.++|.+|...|. .+++.+..+-
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~---------------------------------------- 193 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR---------------------------------------- 193 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC----------------------------------------
Confidence 58999999999 77799999999999996 5776632110
Q ss_pred cccCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEeec
Q 012280 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL 217 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~~~ 217 (467)
+..+..+.+|+||.|+..+. ++.....+.|.-+|+.+..
T Consensus 194 -------~l~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 194 -------DLPAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred -------CHHHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence 12455678999999998865 3343335566667776554
No 404
>PRK12829 short chain dehydrogenase; Provisional
Probab=89.84 E-value=1.4 Score=42.18 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=30.3
Q ss_pred HhhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 89 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
..+++++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r 43 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV 43 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 3478899999996 66999999999999984 777764
No 405
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=89.77 E-value=0.82 Score=45.26 Aligned_cols=94 Identities=19% Similarity=0.198 Sum_probs=54.0
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 94 ~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
.||+|+|+ |-+|+.++..|...|..-+.+ +.. ++-....+.+.+.+.+..|++-|++-. +
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~----------------~~dl~d~~~~~~~~~~~~pd~Vin~aa--~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIAT-SRS----------------DLDLTDPEAVAKLLEAFKPDVVINCAA--Y 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEE-STT----------------CS-TTSHHHHHHHHHHH--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEe-Cch----------------hcCCCCHHHHHHHHHHhCCCeEeccce--e
Confidence 37999996 559999999999877543333 322 222345667788888887776555421 1
Q ss_pred CcccHHhhcCCCeEEEEcCCChh--------HHHHHHHHHHHcCCcEEEEeecC
Q 012280 173 RTSNALEILSQYEIVVDATDNAP--------SRYMISDCCVVLGKPLVSGAALG 218 (467)
Q Consensus 173 ~~~~~~~~~~~~DlVi~~~d~~~--------~r~~i~~~~~~~~~p~i~~~~~g 218 (467)
+.-.. |-.++. .-..|.++|...+.++|..++..
T Consensus 62 ~~~~~------------ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~ 103 (286)
T PF04321_consen 62 TNVDA------------CEKNPEEAYAINVDATKNLAEACKERGARLIHISTDY 103 (286)
T ss_dssp --HHH------------HHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGG
T ss_pred ecHHh------------hhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccE
Confidence 10000 111222 22346688999999999887753
No 406
>PLN02740 Alcohol dehydrogenase-like
Probab=89.76 E-value=2.1 Score=44.03 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=29.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+.+|+|+|+|++|..++..+...|+.++..+|.+
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~ 232 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN 232 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 5689999999999999999999999888887653
No 407
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=89.72 E-value=1.5 Score=41.80 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=52.7
Q ss_pred cEEEEcCCchHHHHHHHHHHhc---CCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 95 SILVIGAGGLGSPALLYLAACG---VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~G---vg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
+|.|||||++|..+++.+ +-| +.-+.+.| -...|+..+.+.+..-.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~D-------------------~~~ek~~~~~~~~~~~~~---------- 51 (255)
T COG1712 2 KVGIVGCGAIGKFLLELV-RDGRVDFELVAVYD-------------------RDEEKAKELEASVGRRCV---------- 51 (255)
T ss_pred eEEEEeccHHHHHHHHHH-hcCCcceeEEEEec-------------------CCHHHHHHHHhhcCCCcc----------
Confidence 689999999999988865 434 33333333 334455544433322111
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEe
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~ 215 (467)
....+++...|+||.|....+.+...- -+.+.|+.+|-.+
T Consensus 52 ---s~ide~~~~~DlvVEaAS~~Av~e~~~-~~L~~g~d~iV~S 91 (255)
T COG1712 52 ---SDIDELIAEVDLVVEAASPEAVREYVP-KILKAGIDVIVMS 91 (255)
T ss_pred ---ccHHHHhhccceeeeeCCHHHHHHHhH-HHHhcCCCEEEEe
Confidence 233456688999999877656655444 3557788776544
No 408
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.71 E-value=0.42 Score=48.00 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=29.3
Q ss_pred cEEEEcCCchHHHHHHHHHHhcC-CeEEEEeCC
Q 012280 95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHD 126 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D 126 (467)
+|.|||+|.+|+.+|..|+..|+ .++.++|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 69999999999999999999996 789999854
No 409
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=89.62 E-value=0.4 Score=48.96 Aligned_cols=35 Identities=37% Similarity=0.541 Sum_probs=31.3
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCcc
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V 128 (467)
...|+|||+|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999996 6999998754
No 410
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=89.60 E-value=1 Score=50.57 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=46.7
Q ss_pred HHHHhhcccccccCCCCHHH------------------HHhhhcCcEEEEcCCchHHHHHHHHHHhcCC--eEEEEeCCc
Q 012280 68 PDMIYRYSRHLLLPSFGVEG------------------QSNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV 127 (467)
Q Consensus 68 ~~~~~ry~Rq~~l~~~G~~~------------------q~~L~~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~ 127 (467)
.+-.+||...+-+|-|..+- -++|.+.||++.|+|+.|..+++.|...|+. +|.++|..-
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G 221 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG 221 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence 34457777766455464322 1588999999999999999999999999995 899999754
No 411
>PLN02572 UDP-sulfoquinovose synthase
Probab=89.58 E-value=4.3 Score=42.89 Aligned_cols=38 Identities=34% Similarity=0.429 Sum_probs=31.3
Q ss_pred HHhhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 88 QSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 88 q~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
-.++++++|+|.|+ |.+|+.+++.|+..|. ++.++|..
T Consensus 42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~~ 80 (442)
T PLN02572 42 SSSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDNL 80 (442)
T ss_pred CccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence 34677788999996 6799999999999996 58888853
No 412
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.58 E-value=1.4 Score=46.20 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=29.7
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+.++|+|+|.|+.|..+|+.|...|. +++.+|.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~ 35 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKS 35 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35689999999999999999999997 68888854
No 413
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=89.57 E-value=0.46 Score=47.48 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=31.1
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccC
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE 129 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~ 129 (467)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence 38999999999999999999999 89999999553
No 414
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=89.54 E-value=1.9 Score=47.89 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=41.5
Q ss_pred CCCCHHHHhhcccccccC-CCC-HHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 64 YGLSPDMIYRYSRHLLLP-SFG-VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~-~~G-~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
.+++--.++||....... .+. ......-..++|+|||+|..|..+|..|++.|. +++|+|...
T Consensus 162 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~ 226 (652)
T PRK12814 162 EPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE 226 (652)
T ss_pred CCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 456666677776432110 011 000112245789999999999999999999997 599998653
No 415
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=89.54 E-value=0.95 Score=45.88 Aligned_cols=35 Identities=29% Similarity=0.233 Sum_probs=28.8
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+++++|+|.|+ |.+|+.+++.|+..|. ++.++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999996 6699999999999996 46666654
No 416
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=89.53 E-value=2.7 Score=44.36 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=34.2
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.|+.++|+|-|.|-+|..+|+.|...|..-+++-|.+
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 5888999999999999999999999999888888877
No 417
>PRK07774 short chain dehydrogenase; Provisional
Probab=89.50 E-value=1.7 Score=41.29 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=29.4
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356788999997 8899999999999996 57776543
No 418
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.48 E-value=1.5 Score=41.73 Aligned_cols=34 Identities=38% Similarity=0.455 Sum_probs=27.6
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
+++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 45688999995 7799999999999987 4666543
No 419
>PRK14031 glutamate dehydrogenase; Provisional
Probab=89.46 E-value=1.1 Score=47.14 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.5
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.|++++|+|.|.|-+|+.+|+.|...|..=+.+-|.+
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~ 261 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD 261 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 5889999999999999999999999999878777744
No 420
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.43 E-value=0.41 Score=49.71 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=30.5
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 589999999999999999999996 699999875
No 421
>CHL00194 ycf39 Ycf39; Provisional
Probab=89.42 E-value=3.1 Score=41.57 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=56.8
Q ss_pred cEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 95 ~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
+|+|.|+ |-+|+.+++.|...|. +++.++.+. .+. ..+.. +.+ +.+..+++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~-------------------~~~----~~l~~--~~v--~~v~~Dl~ 53 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL-------------------RKA----SFLKE--WGA--ELVYGDLS 53 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh-------------------HHh----hhHhh--cCC--EEEECCCC
Confidence 7999996 5599999999999996 466664321 011 11111 133 33444444
Q ss_pred -cccHHhhcCCCeEEEEcCCChh------------HHHHHHHHHHHcCC-cEEEEeec
Q 012280 174 -TSNALEILSQYEIVVDATDNAP------------SRYMISDCCVVLGK-PLVSGAAL 217 (467)
Q Consensus 174 -~~~~~~~~~~~DlVi~~~d~~~------------~r~~i~~~~~~~~~-p~i~~~~~ 217 (467)
++.....++++|+||.+..... .-..+-++|...++ .+|..++.
T Consensus 54 d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 54 LPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred CHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 3445677889999998753221 11234567878776 45655543
No 422
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=89.41 E-value=1.6 Score=50.89 Aligned_cols=97 Identities=12% Similarity=0.168 Sum_probs=55.0
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
+.++|+|||+|..|..+|.+|++.|. +++|+|....--.-+...+ .....++.-++...+.+.++ .+++..-. .
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~~gi--p~~rl~~e~~~~~~~~l~~~--Gv~~~~~~-~ 502 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQYGI--PSFRLPRDIIDREVQRLVDI--GVKIETNK-V 502 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceeeccC--CccCCCHHHHHHHHHHHHHC--CCEEEeCC-c
Confidence 46789999999999999999999997 6999986532111111111 11112222233344445554 35544321 1
Q ss_pred CCcc-cHHhhc--CCCeEEEEcCCCh
Q 012280 172 LRTS-NALEIL--SQYEIVVDATDNA 194 (467)
Q Consensus 172 ~~~~-~~~~~~--~~~DlVi~~~d~~ 194 (467)
+..+ ...++. .+||-||.+|...
T Consensus 503 vg~~~~~~~l~~~~~yDaViIATGa~ 528 (1006)
T PRK12775 503 IGKTFTVPQLMNDKGFDAVFLGVGAG 528 (1006)
T ss_pred cCCccCHHHHhhccCCCEEEEecCCC
Confidence 1111 222332 3699999998863
No 423
>PRK06199 ornithine cyclodeaminase; Validated
Probab=89.39 E-value=1.6 Score=45.16 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=57.6
Q ss_pred cCcEEEEcCCchHHHHHHHHHHh--cCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCc-EEEEcc
Q 012280 93 KSSILVIGAGGLGSPALLYLAAC--GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV-HIIEHR 169 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~--Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v-~v~~~~ 169 (467)
.++++|+|+|.-+-.-++.++.. .+.++.++|.+ ..|++..++.+.+..+++ .+.+.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~-------------------~~~a~~f~~~~~~~~~~~~~v~~~- 214 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG-------------------QKSLDSFATWVAETYPQITNVEVV- 214 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcCCCceEEEe-
Confidence 47899999999999999988763 48888887643 347788888888776544 34442
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCC
Q 012280 170 EALRTSNALEILSQYEIVVDATDN 193 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~ 193 (467)
++..+.++++|+|+.||-+
T Consensus 215 -----~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 215 -----DSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred -----CCHHHHHcCCCEEEEccCC
Confidence 3466778999999998865
No 424
>PRK00811 spermidine synthase; Provisional
Probab=89.36 E-value=1.3 Score=43.92 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=26.1
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
..++||++|+|+ |..+...|...++.++++||-|.
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 457899999985 55444445556899999998774
No 425
>PRK12861 malic enzyme; Reviewed
Probab=89.35 E-value=1.1 Score=50.38 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=46.5
Q ss_pred HHHhhcccccccCCCCHHH------------------HHhhhcCcEEEEcCCchHHHHHHHHHHhcCC--eEEEEeCCcc
Q 012280 69 DMIYRYSRHLLLPSFGVEG------------------QSNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVV 128 (467)
Q Consensus 69 ~~~~ry~Rq~~l~~~G~~~------------------q~~L~~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~V 128 (467)
+-.+||...+.+|-|..+- .++|++.||++.|+|+.|..+++.|...|+. +|.++|..-+
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gl 226 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGV 226 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCe
Confidence 3347787655555464322 2688999999999999999999999999996 8999996643
No 426
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=89.31 E-value=0.53 Score=47.64 Aligned_cols=149 Identities=16% Similarity=0.183 Sum_probs=84.3
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
.|.+++|.|||+|.+|+.+|+.|...|+. +..+|.-. .+.+. ...
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~-----------------~~~~~-----------------~~~ 183 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYS-----------------PRERA-----------------GVD 183 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCC-----------------chhhh-----------------ccc
Confidence 68899999999999999999999999996 44444310 00000 000
Q ss_pred ccCCcccHHhhcCCCeEEEEcC-CChhHHHHHHHHHHH---cCCcEEEEeecCc-----------cceEEEEeCCCCCce
Q 012280 170 EALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVV---LGKPLVSGAALGL-----------EGQLTVYNYNGGPCY 234 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~---~~~p~i~~~~~g~-----------~G~l~v~~~~~~~C~ 234 (467)
.....+...++++.+|+|+..+ -+++++-+|+..-.. .|.-+|+++-.+. .|++. +.-.
T Consensus 184 ~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~------gA~l 257 (324)
T COG0111 184 GVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA------GAAL 257 (324)
T ss_pred cceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc------eEEe
Confidence 0111234567888899888755 556788888765332 3445666532211 12221 1222
Q ss_pred eecCCCCCCcccc----ccc----cCCCcccchHHHHHHHHHHHHHHHHhcCC
Q 012280 235 RCLFPTPPPTTAC----QRC----ADSGVLGVVPGIIGCLQALEAIKVASAVG 279 (467)
Q Consensus 235 ~C~~~~~~~~~~~----~~c----~~~g~~g~~~~v~g~l~A~e~ik~l~g~~ 279 (467)
.-+.++|++.... ++. .-+|+..-...-++-+.+.++.+++.|..
T Consensus 258 DVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~ 310 (324)
T COG0111 258 DVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGP 310 (324)
T ss_pred cCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333333332210 010 11233333345678888889999998875
No 427
>PRK12367 short chain dehydrogenase; Provisional
Probab=89.25 E-value=0.56 Score=45.31 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=34.1
Q ss_pred HHHHhhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 86 EGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 86 ~~q~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
-.|.++++++++|.|+ ||+|..+++.|+..|. ++.+++.+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3689999999999997 6799999999999997 57777654
No 428
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=89.22 E-value=0.96 Score=47.54 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=53.1
Q ss_pred cEEEEcCCchHHHHHH--HHH---HhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 95 SILVIGAGGLGSPALL--YLA---ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 95 ~VlvvG~GglGs~va~--~La---~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
+|.|||+|++|...+. .++ .....++.|+|.|.-. +.. -...+.+.+....+..+|...
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~---l~~------------~~~~~~~~~~~~~~~~~I~~t- 65 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEER---LET------------VEILAKKIVEELGAPLKIEAT- 65 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHH---HHH------------HHHHHHHHHHhcCCCeEEEEe-
Confidence 6999999999988665 454 2222489999865310 000 011123333444444444322
Q ss_pred ccCCcccHHhhcCCCeEEEEcCCChhHHHHHH--HHHHHcCCc
Q 012280 170 EALRTSNALEILSQYEIVVDATDNAPSRYMIS--DCCVVLGKP 210 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~--~~~~~~~~p 210 (467)
.+..+.++++|+||.+.-....+.... +...++++-
T Consensus 66 -----tD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~ 103 (423)
T cd05297 66 -----TDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYY 103 (423)
T ss_pred -----CCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCee
Confidence 223456789999998886544444333 356666653
No 429
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=89.21 E-value=1.9 Score=44.23 Aligned_cols=33 Identities=30% Similarity=0.185 Sum_probs=27.6
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 92 ~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
++++|+|.|+ |-+|+.+++.|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4578999997 6699999999999985 6777774
No 430
>PRK13984 putative oxidoreductase; Provisional
Probab=89.18 E-value=1.5 Score=48.11 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=30.8
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
+.++|+|||+|..|..+|..|.+.|+ +++|+|.+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 56789999999999999999999998 588987654
No 431
>PRK08655 prephenate dehydrogenase; Provisional
Probab=89.12 E-value=0.88 Score=48.05 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=27.0
Q ss_pred cEEEEc-CCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 95 ~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+|+||| +|.+|..++..|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 699997 89999999999999996 68888754
No 432
>PRK06914 short chain dehydrogenase; Provisional
Probab=89.12 E-value=1.9 Score=41.87 Aligned_cols=34 Identities=29% Similarity=0.265 Sum_probs=26.7
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 92 ~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCC
Confidence 4567899985 6799999999999986 46666544
No 433
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=89.10 E-value=5.2 Score=40.51 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=25.8
Q ss_pred hcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 92 ~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+++|+|.|+ |.+|+.+++.|+..|. ++.+++.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 3568999995 6799999999999986 4555543
No 434
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.09 E-value=0.62 Score=49.62 Aligned_cols=87 Identities=15% Similarity=0.235 Sum_probs=54.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCC-eEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhh-CCCcEEEEcccc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREA 171 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~l-np~v~v~~~~~~ 171 (467)
.+|+|+|+|-+|..+|..|+..|.| +++.+|.|.-....++...+.. ..+-.+.+ +++. .-. ..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~----~e~gl~el---l~~~~~~~-------l~ 67 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPI----YEPGLDEV---VKQCRGKN-------LF 67 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCcc----CCCCHHHH---HHHhhcCC-------EE
Confidence 4699999999999999999999865 5778887776655555554322 12222222 2221 101 11
Q ss_pred CCcccHHhhcCCCeEEEEcCCChh
Q 012280 172 LRTSNALEILSQYEIVVDATDNAP 195 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~ 195 (467)
++ .+..+.++.+|+||.|+++|.
T Consensus 68 ~t-~~~~~~i~~advi~I~V~TP~ 90 (473)
T PLN02353 68 FS-TDVEKHVAEADIVFVSVNTPT 90 (473)
T ss_pred EE-cCHHHHHhcCCEEEEEeCCCC
Confidence 22 222345688999999987654
No 435
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.07 E-value=0.37 Score=48.99 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=58.6
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|...- + ... ... .+.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~-------------------~-~~~----~~~--~~~---- 194 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK-------------------P-EAE----KEL--GAE---- 194 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC-------------------h-hhH----HHc--CCE----
Confidence 36899999999999999999999999997 5667664210 0 000 010 010
Q ss_pred cccCCcccHHhhcCCCeEEEEcC-CChhHHHHHHHHHHH---cCCcEEEEe
Q 012280 169 REALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVV---LGKPLVSGA 215 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~---~~~p~i~~~ 215 (467)
.....++++.+|+|+.++ .+..++.++++.... .+.-+|+.+
T Consensus 195 -----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 195 -----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred -----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence 123456778899888776 455678787654332 344466653
No 436
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=89.02 E-value=1.8 Score=41.11 Aligned_cols=35 Identities=26% Similarity=0.530 Sum_probs=28.3
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
|++++|+|.|+ |++|+.+++.|+..|. ++.++|.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 46789999995 6699999999999987 46666543
No 437
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=88.99 E-value=2 Score=45.50 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=30.1
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
..++|+|||.|..|..+|..|++.|. +++|+|..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 45789999999999999999999996 68998854
No 438
>PRK08303 short chain dehydrogenase; Provisional
Probab=88.97 E-value=2.5 Score=42.16 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=30.0
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.|+++.|+|.|+ +|+|.++|+.|+..|. ++.+++.+
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 367789999987 4799999999999997 57777654
No 439
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=88.91 E-value=1.3 Score=51.22 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=31.7
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
-..++|+|||+|..|..+|.+|++.|. +++|+|...
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 356789999999999999999999997 699998653
No 440
>PRK06196 oxidoreductase; Provisional
Probab=88.91 E-value=1.5 Score=43.86 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=29.5
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~ 59 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARR 59 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 466788999997 6799999999999997 47776643
No 441
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=88.91 E-value=1.7 Score=45.59 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=69.4
Q ss_pred cEEEEcCCchHH-HHHHHHHH----hcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 95 SILVIGAGGLGS-PALLYLAA----CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 95 ~VlvvG~GglGs-~va~~La~----~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
||.|||+|+.-+ .+...|+. .++++|.|+|-|. +..|.. =...+++.+++.++.++|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999754 55666665 5679999999874 211111 1124566677777777766553
Q ss_pred ccCCcccHHhhcCCCeEEEEcCC--ChhHHHHHHHHHHHcCCcEEEEeecCccceE
Q 012280 170 EALRTSNALEILSQYEIVVDATD--NAPSRYMISDCCVVLGKPLVSGAALGLEGQL 223 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~d--~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l 223 (467)
+..+.+.++|+||.+.- ..+.|..-.++..++|+- -..+.|..|..
T Consensus 68 ------d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG~~ 115 (419)
T cd05296 68 ------DRREALEGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGGFA 115 (419)
T ss_pred ------CHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcchHH
Confidence 34567889999998763 334555555667777753 35666666643
No 442
>PRK09072 short chain dehydrogenase; Provisional
Probab=88.88 E-value=2.2 Score=41.08 Aligned_cols=36 Identities=39% Similarity=0.620 Sum_probs=29.7
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~ 38 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN 38 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 356788999985 7799999999999996 58887753
No 443
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=88.84 E-value=2.4 Score=41.28 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=25.1
Q ss_pred cEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 95 ~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
||+|+|+ |.+|+.+++.|...|. ++++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 6899996 8899999999999885 5676654
No 444
>PRK07326 short chain dehydrogenase; Provisional
Probab=88.78 E-value=1.5 Score=41.38 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=27.5
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
+.+.+|+|+|+ |++|..+++.|+..|.. +.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence 44678999986 67999999999998884 776654
No 445
>PRK07109 short chain dehydrogenase; Provisional
Probab=88.77 E-value=1.7 Score=44.07 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=29.1
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+++++|+|.|+ ||+|..+++.|+..|. ++.+++.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R 40 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR 40 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 466788999986 7799999999999997 5777764
No 446
>PRK13018 cell division protein FtsZ; Provisional
Probab=88.77 E-value=2.7 Score=43.43 Aligned_cols=101 Identities=16% Similarity=0.314 Sum_probs=63.0
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCC--eEEEEeCCc--cCccccccccccCCC-----------ccCCchhHHHHHH
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV--VELNNMHRQVIHTEP-----------YIGQSKVKSAAAT 155 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~--V~~sNl~Rq~l~~~~-----------diG~~K~~~~~~~ 155 (467)
..+.+|.|||+||-|+.++.+|...|+. .+..++.|. +..+...+.++..+. .+|+.-++...+.
T Consensus 26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~a~~ki~iG~~~t~G~GaG~dp~~G~~aaee~~d~ 105 (378)
T PRK13018 26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIKADKKILIGKSLTRGLGAGGDPEVGRKAAEESRDE 105 (378)
T ss_pred cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEecCCccCCCCCCCCChHHHHHHHHHHHHH
Confidence 4457899999999999999999999976 667888887 333333333433221 1122112222222
Q ss_pred HHhhCCCcEEEEccccCCcccHHhhcCCCeEEEEc------CCChhHHHHHHHHHHHcCCcEEE
Q 012280 156 CRSINSTVHIIEHREALRTSNALEILSQYEIVVDA------TDNAPSRYMISDCCVVLGKPLVS 213 (467)
Q Consensus 156 l~~lnp~v~v~~~~~~~~~~~~~~~~~~~DlVi~~------~d~~~~r~~i~~~~~~~~~p~i~ 213 (467)
..+.++++|+|+-+ |.+-.+ ..|.+++++.+++.+.
T Consensus 106 ---------------------I~~~le~~D~vfI~aGLGGGTGSGaa-pvIa~iake~g~ltv~ 147 (378)
T PRK13018 106 ---------------------IKEVLKGADLVFVTAGMGGGTGTGAA-PVVAEIAKEQGALVVG 147 (378)
T ss_pred ---------------------HHHHhcCCCEEEEEeeccCcchhhHH-HHHHHHHHHcCCCeEE
Confidence 23445678877754 344444 5778888888876654
No 447
>PRK12831 putative oxidoreductase; Provisional
Probab=88.76 E-value=2.5 Score=45.01 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=41.3
Q ss_pred CCCCHHHHhhcccccccC-CCCHHHHHhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 64 YGLSPDMIYRYSRHLLLP-SFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~-~~G~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+++--.++||--..... .|-......-..++|+|||+|..|..+|.+|++.|. +++|+|..
T Consensus 110 ~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~ 172 (464)
T PRK12831 110 EPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEAL 172 (464)
T ss_pred CCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 456666777775432110 011111122356789999999999999999999998 58998853
No 448
>PRK06720 hypothetical protein; Provisional
Probab=88.69 E-value=2.6 Score=38.31 Aligned_cols=36 Identities=33% Similarity=0.547 Sum_probs=29.8
Q ss_pred hhhcCcEEEEcCC-chHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~G-glGs~va~~La~~Gvg~i~lvD~D 126 (467)
+++++.++|.|++ |+|..++..|+..|. ++.++|.+
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~ 49 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDID 49 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence 4678889999976 599999999999995 67777754
No 449
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.67 E-value=1.1 Score=47.14 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=30.4
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+.+++|+|+|.|+.|-.++..|...|. +++..|.+
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 456789999999999999999999997 68888854
No 450
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.67 E-value=1.9 Score=45.71 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=29.1
Q ss_pred hhcCcEEEEcCCchHHH-HHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGAGGLGSP-ALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~-va~~La~~Gvg~i~lvD~D 126 (467)
.+.++|+|+|+|+.|.. +|+.|...|.. +++.|..
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~~ 40 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDLK 40 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECCC
Confidence 34578999999999999 79999999986 6776653
No 451
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.66 E-value=1.8 Score=43.15 Aligned_cols=97 Identities=22% Similarity=0.292 Sum_probs=59.6
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHH--HhhCCCcEEEEcc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATC--RSINSTVHIIEHR 169 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l--~~lnp~v~v~~~~ 169 (467)
..++|+|+|+|++|..+++---.+|.++|.=||-. ..|-+.+++.= .=+||. ...-
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN-------------------~~Kf~~ak~fGaTe~iNp~-d~~~-- 249 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDIN-------------------PDKFEKAKEFGATEFINPK-DLKK-- 249 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecC-------------------HHHHHHHHhcCcceecChh-hccc--
Confidence 45789999999999999999999999999988732 23333333220 012332 0000
Q ss_pred ccCCcccHHhh-cCCCeEEEEcCCChhHHHHHHHHHHHc-CCcEE
Q 012280 170 EALRTSNALEI-LSQYEIVVDATDNAPSRYMISDCCVVL-GKPLV 212 (467)
Q Consensus 170 ~~~~~~~~~~~-~~~~DlVi~~~d~~~~r~~i~~~~~~~-~~p~i 212 (467)
.+. +-..+. --++|+-++|+.++.+...--..|+.- |+.++
T Consensus 250 -~i~-evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~ 292 (375)
T KOG0022|consen 250 -PIQ-EVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVV 292 (375)
T ss_pred -cHH-HHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEE
Confidence 000 001111 146999999999998876655566653 55444
No 452
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=88.61 E-value=1.7 Score=44.04 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=50.9
Q ss_pred cCcEEEEcCCchHHHHHHHHHH-hcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 93 KSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
..+|.|||+|..|...++.|.. ..+.++.+.|. ...|++..++.+++... ++...
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r-------------------~~~~~~~~~~~~~~~g~--~v~~~--- 183 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR-------------------TPSTREKFALRASDYEV--PVRAA--- 183 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC-------------------CHHHHHHHHHHHHhhCC--cEEEe---
Confidence 4779999999999987777754 34566666543 34567777777765432 23322
Q ss_pred CCcccHHhhcCCCeEEEEcCCC
Q 012280 172 LRTSNALEILSQYEIVVDATDN 193 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~ 193 (467)
.+..+.++++|+|+.||.+
T Consensus 184 ---~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 184 ---TDPREAVEGCDILVTTTPS 202 (325)
T ss_pred ---CCHHHHhccCCEEEEecCC
Confidence 3456777899999999865
No 453
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.60 E-value=0.58 Score=52.57 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=29.8
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
++|.|||+|..|+.+|..++.+|. .++|+|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999998 599999663
No 454
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.58 E-value=2.3 Score=41.07 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=28.5
Q ss_pred hhhcCcEEEEcC---CchHHHHHHHHHHhcCCeEEEEe
Q 012280 90 NLLKSSILVIGA---GGLGSPALLYLAACGVGRLGIVD 124 (467)
Q Consensus 90 ~L~~~~VlvvG~---GglGs~va~~La~~Gvg~i~lvD 124 (467)
.+.++.++|.|+ +|+|.++|+.|++.|. ++.+++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~ 40 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTY 40 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEec
Confidence 356789999998 5999999999999997 466664
No 455
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=88.52 E-value=1.1 Score=37.64 Aligned_cols=86 Identities=21% Similarity=0.286 Sum_probs=51.0
Q ss_pred cEEEEcCCchHHHHHHHHHHhc--CCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC
Q 012280 95 SILVIGAGGLGSPALLYLAACG--VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~G--vg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~ 172 (467)
||+|||+|..|...+..+...+ +.-..++|.+. .+++.+ .++.+ +. .+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~-------------------~~~~~~---~~~~~--~~--~~---- 51 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP-------------------ERAEAF---AEKYG--IP--VY---- 51 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH-------------------HHHHHH---HHHTT--SE--EE----
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH-------------------HHHHHH---HHHhc--cc--ch----
Confidence 7999999999999999998873 33334555542 122222 11111 11 11
Q ss_pred CcccHHhhcC--CCeEEEEcCCChhHHHHHHHHHHHcCCcEEE
Q 012280 173 RTSNALEILS--QYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (467)
Q Consensus 173 ~~~~~~~~~~--~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~ 213 (467)
.+..++++ +.|+|+.||.+ .....+...|.+.|++++.
T Consensus 52 --~~~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 52 --TDLEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp --SSHHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEE
T ss_pred --hHHHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEE
Confidence 12334443 67888877775 4455566667777776654
No 456
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=88.47 E-value=2.4 Score=42.72 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=28.5
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+++++|+|.|+ |.+|+++++.|+..|. ++.++|.+
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r~ 39 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIRR 39 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEecc
Confidence 45678999996 7799999999999997 46666643
No 457
>PRK05876 short chain dehydrogenase; Provisional
Probab=88.47 E-value=2.3 Score=41.54 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=28.6
Q ss_pred hhcCcEEEEc-CCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+++++|+|.| .||+|..+++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5677899998 56799999999999998 47776643
No 458
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=88.41 E-value=3.8 Score=40.65 Aligned_cols=30 Identities=33% Similarity=0.408 Sum_probs=25.0
Q ss_pred cEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 95 ~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+|+|.|+ |-+|+.+++.|...| +++.+|..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~ 32 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVH 32 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccc
Confidence 7999997 669999999999888 57777653
No 459
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=88.37 E-value=2.4 Score=34.90 Aligned_cols=78 Identities=14% Similarity=0.111 Sum_probs=48.2
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
++.+|+-+|||. |......+.+..-.+++-||.+.- =.+.+++.+.+....-+|..+...
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~~-------------------~~~~a~~~~~~~~~~~~i~~~~~d 60 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGARVVGVDISPE-------------------MLEIARERAAEEGLSDRITFVQGD 60 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSHH-------------------HHHHHHHHHHHTTTTTTEEEEESC
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCHH-------------------HHHHHHHHHHhcCCCCCeEEEECc
Confidence 467899999984 665544444455666998887521 234555555444444455555555
Q ss_pred CCcccHHhhcCCCeEEEEcC
Q 012280 172 LRTSNALEILSQYEIVVDAT 191 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~ 191 (467)
+ ....+...+||+|+...
T Consensus 61 ~--~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 61 A--EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp C--HGGTTTSSCEEEEEECS
T ss_pred c--ccCcccCCCCCEEEECC
Confidence 5 23345567799999766
No 460
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.34 E-value=2.1 Score=40.51 Aligned_cols=36 Identities=31% Similarity=0.548 Sum_probs=29.8
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356788999985 5799999999999998 78888754
No 461
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=88.33 E-value=0.69 Score=51.93 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=29.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
++|.|||+|..|+.+|..++.+|+ .++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999998 589998764
No 462
>PRK05086 malate dehydrogenase; Provisional
Probab=88.23 E-value=1.4 Score=44.36 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=26.9
Q ss_pred CcEEEEcC-CchHHHHHHHHHH-hcC-CeEEEEeCC
Q 012280 94 SSILVIGA-GGLGSPALLYLAA-CGV-GRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~-GglGs~va~~La~-~Gv-g~i~lvD~D 126 (467)
.||+|||+ |++|+.++..|.. .+. ..+.++|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~ 36 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIA 36 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecC
Confidence 47999999 9999999999865 455 468898853
No 463
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=88.22 E-value=1.5 Score=43.88 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=27.7
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
+.+++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r 38 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR 38 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence 45678999985 7799999999999995 6777764
No 464
>PRK06172 short chain dehydrogenase; Provisional
Probab=88.18 E-value=2.3 Score=40.56 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=28.8
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~ 40 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRD 40 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 56789999996 5799999999999996 57776543
No 465
>PRK12744 short chain dehydrogenase; Provisional
Probab=88.13 E-value=2.6 Score=40.42 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=26.5
Q ss_pred hhhcCcEEEEc-CCchHHHHHHHHHHhcCCeEEE
Q 012280 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGI 122 (467)
Q Consensus 90 ~L~~~~VlvvG-~GglGs~va~~La~~Gvg~i~l 122 (467)
.|++++|+|.| .|++|..+++.|+..|...+.+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 46678999998 5569999999999999864433
No 466
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=88.08 E-value=2.7 Score=44.21 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=69.6
Q ss_pred cEEEEcCCch-HHHHHHHHH----HhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 95 SILVIGAGGL-GSPALLYLA----ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 95 ~VlvvG~Ggl-Gs~va~~La----~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
||.|||+|+. .-.++..|+ ...+++|.|+|-|.- |+-. =...+++.+++.++.++|+...
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~------Rl~~---------v~~l~~~~~~~~g~~~~v~~tt 66 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEE------RLDI---------ILTIAKRYVEEVGADIKFEKTM 66 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHH------HHHH---------HHHHHHHHHHhhCCCeEEEEeC
Confidence 7999999996 445666676 345689999997631 1110 1224555567778777776654
Q ss_pred ccCCcccHHhhcCCCeEEEEcC--CChhHHHHHHHHHHHcCCcEEEEeecCccceE
Q 012280 170 EALRTSNALEILSQYEIVVDAT--DNAPSRYMISDCCVVLGKPLVSGAALGLEGQL 223 (467)
Q Consensus 170 ~~~~~~~~~~~~~~~DlVi~~~--d~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l 223 (467)
+-.+.+.++|+||... +..+.|..-.++..++|+- -..+.|..|..
T Consensus 67 ------D~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~--gqeT~G~GG~~ 114 (425)
T cd05197 67 ------DLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVI--GQETVGPGGTF 114 (425)
T ss_pred ------CHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcc--cccccCcchhh
Confidence 3456789999999875 4445666556677788753 25666666644
No 467
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=88.03 E-value=0.61 Score=47.66 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=29.8
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCcc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V 128 (467)
.|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 59999999999999999999996 6999998654
No 468
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.98 E-value=2.3 Score=41.61 Aligned_cols=32 Identities=31% Similarity=0.586 Sum_probs=25.5
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++.++|.|+||+|..+++.|+ .|. ++.++|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCC
Confidence 356888899999999999996 674 67777643
No 469
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=87.91 E-value=2.1 Score=43.50 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=53.7
Q ss_pred CcEEEEcCCc-hHHHHHHHHHHhcCCe--EEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 94 SSILVIGAGG-LGSPALLYLAACGVGR--LGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 94 ~~VlvvG~Gg-lGs~va~~La~~Gvg~--i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
.+|+|+|+.| +|.++++.|...|... +..+- +..+.|+.=. ++ ..++...
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~---------------s~~~~g~~l~---------~~-g~~i~v~-- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLA---------------SARSAGKELS---------FK-GKELKVE-- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEE---------------ccccCCCeee---------eC-CceeEEe--
Confidence 4799999766 8999999999876543 33331 1122332110 11 1122211
Q ss_pred cCCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEe
Q 012280 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (467)
Q Consensus 171 ~~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~ 215 (467)
.++. ..++++|+||.|+.+..++.+...+ ...|..+|+.+
T Consensus 55 d~~~----~~~~~vDvVf~A~g~g~s~~~~~~~-~~~G~~VIDlS 94 (334)
T PRK14874 55 DLTT----FDFSGVDIALFSAGGSVSKKYAPKA-AAAGAVVIDNS 94 (334)
T ss_pred eCCH----HHHcCCCEEEECCChHHHHHHHHHH-HhCCCEEEECC
Confidence 1211 1236899999999988777766554 45677788654
No 470
>PRK06932 glycerate dehydrogenase; Provisional
Probab=87.91 E-value=0.41 Score=48.24 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=58.5
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
..|++++|.|||.|.+|..+|+.|...|+. +..+|... ..+.. .
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~~-------------~~~~~-----------------~----- 186 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHKG-------------ASVCR-----------------E----- 186 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCc-------------ccccc-----------------c-----
Confidence 469999999999999999999999988884 55444210 00000 0
Q ss_pred cccCCcccHHhhcCCCeEEEEcC-CChhHHHHHHHHHHH---cCCcEEEEe
Q 012280 169 REALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVV---LGKPLVSGA 215 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~---~~~p~i~~~ 215 (467)
......++++.+|+|+.+. -++.++.+|+..... .+.-+|+.+
T Consensus 187 ----~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 187 ----GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred ----ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence 0123567888899888765 467788888876443 344466653
No 471
>PRK06487 glycerate dehydrogenase; Provisional
Probab=87.91 E-value=0.44 Score=48.07 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=58.6
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
..|.+++|.|||.|.+|..+|+.|...|.. +..+|... ..... .
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~~~------------~~~~~-------------------~---- 187 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQLPG------------RPARP-------------------D---- 187 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCCC------------Ccccc-------------------c----
Confidence 469999999999999999999999988884 55554310 00000 0
Q ss_pred cccCCcccHHhhcCCCeEEEEcC-CChhHHHHHHHHHHH---cCCcEEEEe
Q 012280 169 REALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVV---LGKPLVSGA 215 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~---~~~p~i~~~ 215 (467)
.....++++.+|+|+.+. -+++++.+|+..... .+.-+|+.+
T Consensus 188 -----~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a 233 (317)
T PRK06487 188 -----RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA 233 (317)
T ss_pred -----ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence 013567888899888765 567788888876443 344466653
No 472
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.87 E-value=3.6 Score=41.51 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=29.2
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+.+|+|.|+|++|..++..+...|+..+..+|.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~ 193 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI 193 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 3579999999999999999999999987777654
No 473
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=87.86 E-value=0.45 Score=47.85 Aligned_cols=88 Identities=15% Similarity=0.114 Sum_probs=58.4
Q ss_pred HhhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEc
Q 012280 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (467)
Q Consensus 89 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~ 168 (467)
..|.+++|.|||.|.+|..+|+.|...|. ++..+|.-.. ..+.| +
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~------------~~~~~-----------------~----- 185 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGK------------NKNEE-----------------Y----- 185 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCcc------------ccccC-----------------c-----
Confidence 47999999999999999999999998887 4655654100 00000 0
Q ss_pred cccCCcccHHhhcCCCeEEEEcC-CChhHHHHHHHHHHH---cCCcEEEEe
Q 012280 169 REALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVV---LGKPLVSGA 215 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~---~~~p~i~~~ 215 (467)
......++++.+|+|+.+. -+++++.+|++.... .+.-+|+.+
T Consensus 186 ----~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~a 232 (311)
T PRK08410 186 ----ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVG 232 (311)
T ss_pred ----eeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECC
Confidence 0123557788889877655 566788888876444 344466643
No 474
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=87.84 E-value=0.59 Score=48.96 Aligned_cols=32 Identities=38% Similarity=0.429 Sum_probs=29.0
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
.+|+|||+|-+|+++|..|++.|+. ++|+|..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~r 34 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP-VELYEMR 34 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc-EEEEEcc
Confidence 5799999999999999999999985 8999854
No 475
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=87.83 E-value=2.9 Score=39.79 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=30.7
Q ss_pred HhhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 89 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
..+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~ 45 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT 45 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence 3578889999985 5599999999999997 67787765
No 476
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=87.76 E-value=1.6 Score=41.02 Aligned_cols=35 Identities=40% Similarity=0.501 Sum_probs=28.7
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+.+++|+|.|+ |++|..+++.|+..|.. +.+++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 44578999996 77999999999999986 7777654
No 477
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.70 E-value=0.7 Score=51.88 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=29.5
Q ss_pred cCcEEEEcCCchHHHHHHHHH-HhcCCeEEEEeCCc
Q 012280 93 KSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDV 127 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ 127 (467)
-++|.|||+|..|+.+|..++ .+|+ .++++|.+.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH
Confidence 367999999999999999999 8897 588998753
No 478
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.68 E-value=2.2 Score=44.99 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=30.1
Q ss_pred hhhc-CcEEEEcCCchHHHHHHHHHHhcC-CeEEEEeCC
Q 012280 90 NLLK-SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHD 126 (467)
Q Consensus 90 ~L~~-~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D 126 (467)
++.+ ++|+|+|.|+.|..++..|...|- -++++.|..
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~ 41 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTR 41 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 3455 789999999999999999999865 468887754
No 479
>PLN02712 arogenate dehydrogenase
Probab=87.68 E-value=3 Score=46.47 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=30.0
Q ss_pred hhhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 90 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.++..+|.|||+|.+|..+|+.|...|. +|.++|.
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr 400 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSR 400 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEEC
Confidence 4577899999999999999999999885 5777765
No 480
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.66 E-value=3.1 Score=40.74 Aligned_cols=34 Identities=38% Similarity=0.451 Sum_probs=29.6
Q ss_pred hcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeC
Q 012280 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 92 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
.+.+|+|+|+|++|..++..+...|+.++..+|.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~ 153 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP 153 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 5679999999999999999888899988887753
No 481
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.66 E-value=1.4 Score=43.67 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=27.0
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
..+|+|+|+|.+|..+++.|.+.|... .+++.|
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v-~i~g~d 35 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVV-RIIGRD 35 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeE-EEEeec
Confidence 468999999999999999999999863 344443
No 482
>PRK15076 alpha-galactosidase; Provisional
Probab=87.64 E-value=1 Score=47.51 Aligned_cols=107 Identities=20% Similarity=0.195 Sum_probs=60.7
Q ss_pred CcEEEEcCCchHHHHHH--HHH--HhcCC-eEEEEeCCccCccccccccccCCCccCCch-hHH-HHHHHHhhCCCcEEE
Q 012280 94 SSILVIGAGGLGSPALL--YLA--ACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSK-VKS-AAATCRSINSTVHII 166 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~--~La--~~Gvg-~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K-~~~-~~~~l~~lnp~v~v~ 166 (467)
.||.|||+|++|...+. .++ ..-.+ +|.|+|-|.= | .+ +.. +.+.+....+..+|.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~e------r-----------~~~~~~l~~~~~~~~~~~~~i~ 64 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPE------R-----------LEESEIVARKLAESLGASAKIT 64 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHH------H-----------HHHHHHHHHHHHHhcCCCeEEE
Confidence 47999999999876665 554 22223 8999986530 0 11 112 334444445555554
Q ss_pred EccccCCcccHHhhcCCCeEEEEcCCCh--hHHH-HHHHHHHHcCCcEEEEeecCccceE
Q 012280 167 EHREALRTSNALEILSQYEIVVDATDNA--PSRY-MISDCCVVLGKPLVSGAALGLEGQL 223 (467)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~DlVi~~~d~~--~~r~-~i~~~~~~~~~p~i~~~~~g~~G~l 223 (467)
... +..+.++++|+||.+.-.. ..+. .=.++..++|+----+...|..|..
T Consensus 65 ~tt------D~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~ 118 (431)
T PRK15076 65 ATT------DRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIM 118 (431)
T ss_pred EEC------CHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchh
Confidence 322 2235678899999887654 2232 2335677777741112455555543
No 483
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=87.63 E-value=2.6 Score=43.23 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=30.0
Q ss_pred cCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 93 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 191 g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~ 224 (373)
T cd08299 191 GSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDIN 224 (373)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 5689999999999999999999999888888754
No 484
>PRK07890 short chain dehydrogenase; Provisional
Probab=87.61 E-value=2.9 Score=39.96 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=28.7
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
|.+++|+|.|+ |++|..+++.|+.-|. ++.++|.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 56788999986 6799999999999997 6777764
No 485
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=87.56 E-value=1.5 Score=42.97 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=29.1
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
+|+|||+|..|..+|..|.+.|.. ++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccC
Confidence 699999999999999999999985 99999654
No 486
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=87.54 E-value=3.3 Score=40.27 Aligned_cols=93 Identities=23% Similarity=0.259 Sum_probs=60.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccC-
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL- 172 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~- 172 (467)
++|+|+|--+=|-.++..|...|. +.+ . | . .+.|. +.+....+. +..+...+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~--v~~-s---v----------~--t~~g~-------~~~~~~~~~--~~v~~G~lg 53 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY--VIV-S---V----------A--TSYGG-------ELLKPELPG--LEVRVGRLG 53 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC--EEE-E---E----------E--hhhhH-------hhhccccCC--ceEEECCCC
Confidence 479999988889999999999997 221 0 0 0 11111 111111122 23445555
Q ss_pred CcccHHhhc--CCCeEEEEcCCChhHHH--HHHHHHHHcCCcEEE
Q 012280 173 RTSNALEIL--SQYEIVVDATDNAPSRY--MISDCCVVLGKPLVS 213 (467)
Q Consensus 173 ~~~~~~~~~--~~~DlVi~~~d~~~~r~--~i~~~~~~~~~p~i~ 213 (467)
+.+...+++ .+.++|||+|..++... -+.++|.+.|+|++-
T Consensus 54 ~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR 98 (249)
T PF02571_consen 54 DEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLR 98 (249)
T ss_pred CHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEE
Confidence 555555666 47899999999988654 477889999999884
No 487
>PLN00016 RNA-binding protein; Provisional
Probab=87.45 E-value=2.2 Score=43.94 Aligned_cols=115 Identities=12% Similarity=0.137 Sum_probs=62.5
Q ss_pred HHhhhcCcEEEE----cC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCC
Q 012280 88 QSNLLKSSILVI----GA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST 162 (467)
Q Consensus 88 q~~L~~~~Vlvv----G~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~ 162 (467)
-.....++|+|+ |+ |-+|+.+++.|...|. ++++++.+.-....+ . ....... ..+.. ..
T Consensus 47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~-----~------~~~~~~~-~~l~~--~~ 111 (378)
T PLN00016 47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKM-----K------KEPFSRF-SELSS--AG 111 (378)
T ss_pred hcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhh-----c------cCchhhh-hHhhh--cC
Confidence 445666789999 86 6699999999999995 677777553110000 0 0000000 01111 12
Q ss_pred cEEEEccccCCcccHHhhc--CCCeEEEEcCCCh-hHHHHHHHHHHHcCC-cEEEEeecCccc
Q 012280 163 VHIIEHREALRTSNALEIL--SQYEIVVDATDNA-PSRYMISDCCVVLGK-PLVSGAALGLEG 221 (467)
Q Consensus 163 v~v~~~~~~~~~~~~~~~~--~~~DlVi~~~d~~-~~r~~i~~~~~~~~~-p~i~~~~~g~~G 221 (467)
++ .+..+++. ..+.+ .++|+||++.... ..-.-+-++|.+.|+ .+|..++.+..|
T Consensus 112 v~--~v~~D~~d--~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg 170 (378)
T PLN00016 112 VK--TVWGDPAD--VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYK 170 (378)
T ss_pred ce--EEEecHHH--HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcC
Confidence 32 22223322 22333 4689999886432 222335567887776 477776654443
No 488
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=87.44 E-value=3.5 Score=41.59 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=26.0
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 94 ~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++|+|.|+ |.+|+.+++.|...|. ++.++|..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~ 33 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRR 33 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecC
Confidence 47899986 6699999999999997 56666643
No 489
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=87.41 E-value=1.8 Score=44.23 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=54.2
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcCCeEE-EEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcccc
Q 012280 94 SSILVIGA-GGLGSPALLYLAACGVGRLG-IVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (467)
Q Consensus 94 ~~VlvvG~-GglGs~va~~La~~Gvg~i~-lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~ 171 (467)
.+|+|+|+ |.+|.++++.|....--++. ++|.. ..|+ .+.+..+.+... ....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~----------------~~g~--------~l~~~~~~~~~~-~~~~ 57 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS----------------SAGK--------PLSDVHPHLRGL-VDLV 57 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc----------------ccCc--------chHHhCcccccc-cCce
Confidence 58999998 66899999999876333443 33311 1111 011111211100 0011
Q ss_pred CCcccHHhhcCCCeEEEEcCCChhHHHHHHHHHHHcCCcEEEEe-ecCc
Q 012280 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA-ALGL 219 (467)
Q Consensus 172 ~~~~~~~~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~~p~i~~~-~~g~ 219 (467)
+++.... .+.+.|+|+.|+.+.....++. .+.+.|+.+|+.+ .+++
T Consensus 58 ~~~~~~~-~~~~vD~Vf~alP~~~~~~~v~-~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 58 LEPLDPE-ILAGADVVFLALPHGVSMDLAP-QLLEAGVKVIDLSADFRL 104 (343)
T ss_pred eecCCHH-HhcCCCEEEECCCcHHHHHHHH-HHHhCCCEEEECCcccCC
Confidence 1111111 3467999999998865554444 4566899999854 3444
No 490
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=87.40 E-value=2.8 Score=40.06 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=27.6
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEe
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD 124 (467)
.|.+++++|.|+ |++|..+++.|+..|. ++.++|
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~ 40 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIIND 40 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEc
Confidence 356788999985 6699999999999997 566654
No 491
>PRK08264 short chain dehydrogenase; Validated
Probab=87.35 E-value=0.74 Score=43.54 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=31.7
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
++.+++|+|.|+ |++|..+++.|++.|..++.+++.+
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 367789999985 7799999999999999778888765
No 492
>PLN02214 cinnamoyl-CoA reductase
Probab=87.35 E-value=2.9 Score=42.37 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=58.5
Q ss_pred hhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEcc
Q 012280 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (467)
Q Consensus 91 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~ 169 (467)
++.++|+|.|+ |.+|+.+++.|...|. +++.++.+. ++. +. .....+....+ .++.+.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~~--------------~~-~~~~~~~~~~~--~~~~~~ 66 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNP---DDP--------------KN-THLRELEGGKE--RLILCK 66 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCc---hhh--------------hH-HHHHHhhCCCC--cEEEEe
Confidence 46778999997 7799999999999996 455554321 000 00 01111111111 234444
Q ss_pred ccCCc-ccHHhhcCCCeEEEEcCCC----hh--------HHHHHHHHHHHcCC-cEEEEee
Q 012280 170 EALRT-SNALEILSQYEIVVDATDN----AP--------SRYMISDCCVVLGK-PLVSGAA 216 (467)
Q Consensus 170 ~~~~~-~~~~~~~~~~DlVi~~~d~----~~--------~r~~i~~~~~~~~~-p~i~~~~ 216 (467)
.+++. +...+.++++|+||.+... +. .-..+-++|.+.++ .+|..+.
T Consensus 67 ~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 67 ADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred cCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 45543 3345667889999987632 11 11224456777775 4665544
No 493
>PRK06128 oxidoreductase; Provisional
Probab=87.32 E-value=3.2 Score=41.04 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=28.1
Q ss_pred HhhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEE
Q 012280 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIV 123 (467)
Q Consensus 89 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lv 123 (467)
.+|++++|+|.|+ ||+|..+++.|++.|.. +.++
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~ 85 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGAD-IALN 85 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEE
Confidence 3688899999986 77999999999999984 5444
No 494
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=87.31 E-value=3.9 Score=41.33 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=26.6
Q ss_pred CcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeC
Q 012280 94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (467)
Q Consensus 94 ~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~ 125 (467)
++|+|.|+ |.+|+.+++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 47999996 669999999999999776767664
No 495
>PRK10537 voltage-gated potassium channel; Provisional
Probab=86.98 E-value=2.9 Score=43.54 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=57.6
Q ss_pred hhcCcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccc
Q 012280 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (467)
Q Consensus 91 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~ 170 (467)
.++.+|+|+|.|.+|..+++.|...|. .++++|.|.++. . . ..+.. .+..
T Consensus 238 ~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~------~-~--------------------~~g~~--vI~G 287 (393)
T PRK10537 238 HRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH------R-L--------------------PDDAD--LIPG 287 (393)
T ss_pred ccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh------h-c--------------------cCCCc--EEEe
Confidence 346789999999999999999998887 578888763210 0 0 00111 2223
Q ss_pred cCCcccHH--hhcCCCeEEEEcCCChhHHHHHHHHHHHcC
Q 012280 171 ALRTSNAL--EILSQYEIVVDATDNAPSRYMISDCCVVLG 208 (467)
Q Consensus 171 ~~~~~~~~--~~~~~~DlVi~~~d~~~~r~~i~~~~~~~~ 208 (467)
+.+.+... .-+++++.|+.++++......+-..+++.+
T Consensus 288 D~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 288 DSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS 327 (393)
T ss_pred CCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence 33332222 234678999999988777766666677765
No 496
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=86.97 E-value=0.74 Score=47.76 Aligned_cols=32 Identities=28% Similarity=0.630 Sum_probs=29.6
Q ss_pred cEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCc
Q 012280 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (467)
Q Consensus 95 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 127 (467)
+|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 69999999999999999999996 699999874
No 497
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=86.94 E-value=0.63 Score=46.42 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=28.3
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCcc
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V 128 (467)
..|+|||+|..|+.+|..|++.|+. ++|+|....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 4699999999999999999999986 889987653
No 498
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=86.88 E-value=4.6 Score=40.08 Aligned_cols=126 Identities=20% Similarity=0.213 Sum_probs=71.7
Q ss_pred CcEEEEcCCchHHHHHHHHHHhcCCeEEEEeCCccCccccccccccCCCccCCchhHHHHHHHHhhCCCcEEEEccccCC
Q 012280 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (467)
Q Consensus 94 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~Rq~l~~~~diG~~K~~~~~~~l~~lnp~v~v~~~~~~~~ 173 (467)
.+|.+||+|..|.++|.+|..+|. .+++.|.+.-....+.+ ..|-.-+.+.++...+. ++-|...+..-.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~-------~~Ga~~a~s~~eaa~~a--DvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLA-------AAGATVAASPAEAAAEA--DVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHH-------HcCCcccCCHHHHHHhC--CEEEEecCCHHH
Confidence 479999999999999999999995 57777655322111111 11222222222222221 333333222211
Q ss_pred -------cccHHhhcCCCeEEEEcC-CChhHHHHHHHHHHHcCCcEEEEeecCc-----cceEEEEeCC
Q 012280 174 -------TSNALEILSQYEIVVDAT-DNAPSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYNYN 229 (467)
Q Consensus 174 -------~~~~~~~~~~~DlVi~~~-d~~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~l~v~~~~ 229 (467)
++...+-+++=.+|||++ -++..-..+.......|..++++-..|. .|.+++..-+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG 139 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGG 139 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCC
Confidence 111222334556777765 5566677788888999999998755443 4777776543
No 499
>PRK08589 short chain dehydrogenase; Validated
Probab=86.87 E-value=2.6 Score=40.96 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=28.3
Q ss_pred hhhcCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEe
Q 012280 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (467)
Q Consensus 90 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD 124 (467)
++++++|+|.|+ ||+|.++++.|+..|. ++.+++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~ 37 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD 37 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 467789999997 6799999999999997 466654
No 500
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=86.86 E-value=2.9 Score=41.74 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=26.0
Q ss_pred cCcEEEEcC-CchHHHHHHHHHHhcCCeEEEEeCC
Q 012280 93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (467)
Q Consensus 93 ~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 126 (467)
+++|+|.|+ |++|+.+++.|+..|.. +.+++.|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYT-INATVRD 38 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEEcC
Confidence 468999995 77999999999999974 5555443
Done!