Query 012281
Match_columns 467
No_of_seqs 125 out of 661
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 00:58:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278 Endosomal membrane pro 100.0 2E-143 4E-148 1108.0 36.0 436 20-466 28-526 (628)
2 KOG1277 Endosomal membrane pro 100.0 6E-139 1E-143 1050.8 32.8 462 4-465 4-490 (593)
3 PF02990 EMP70: Endomembrane p 100.0 1E-121 2E-126 985.9 31.1 411 50-465 1-460 (521)
4 PF12670 DUF3792: Protein of u 79.8 2.5 5.4E-05 36.9 4.0 77 271-351 6-83 (116)
5 PF11368 DUF3169: Protein of u 72.9 18 0.00039 35.6 8.5 39 340-385 199-237 (248)
6 PRK11339 abgT putative aminobe 59.7 24 0.00053 38.6 6.9 84 276-362 265-360 (508)
7 PF06609 TRI12: Fungal trichot 55.0 43 0.00094 37.5 8.0 61 274-344 143-205 (599)
8 PF03806 ABG_transport: AbgT p 53.5 76 0.0016 34.8 9.3 146 303-452 299-487 (502)
9 TIGR02973 nitrate_rd_NapE peri 51.6 18 0.0004 26.0 2.9 35 331-365 2-36 (42)
10 PF06679 DUF1180: Protein of u 50.9 14 0.00029 34.5 2.8 20 208-227 99-118 (163)
11 KOG1278 Endosomal membrane pro 46.9 2.1E+02 0.0046 31.8 11.3 154 267-448 398-574 (628)
12 PF07331 TctB: Tripartite tric 46.8 77 0.0017 27.7 7.0 22 331-353 111-132 (141)
13 PF06796 NapE: Periplasmic nit 44.5 21 0.00046 27.2 2.5 36 329-364 13-48 (56)
14 TIGR02972 TMAO_torE trimethyla 43.6 22 0.00048 26.2 2.4 35 330-364 6-40 (47)
15 COG5393 Predicted membrane pro 42.7 32 0.00068 30.3 3.6 43 278-320 48-102 (131)
16 PF12823 DUF3817: Domain of un 41.6 10 0.00022 31.8 0.4 26 419-444 62-87 (92)
17 PF06570 DUF1129: Protein of u 41.3 84 0.0018 29.9 6.8 42 284-328 91-133 (206)
18 PF05297 Herpes_LMP1: Herpesvi 39.6 9.7 0.00021 38.4 0.0 52 300-351 101-154 (381)
19 PF13347 MFS_2: MFS/sugar tran 37.7 1.1E+02 0.0023 31.9 7.5 82 247-333 208-291 (428)
20 PRK11588 hypothetical protein; 35.8 2.7E+02 0.0059 30.6 10.2 27 299-325 306-332 (506)
21 KOG4812 Golgi-associated prote 33.0 1.3E+02 0.0028 29.8 6.4 71 274-360 157-246 (262)
22 TIGR00819 ydaH p-Aminobenzoyl- 32.1 1.7E+02 0.0036 32.3 7.9 49 276-325 267-328 (513)
23 PF02990 EMP70: Endomembrane p 29.9 5.1E+02 0.011 28.4 11.4 57 339-398 424-482 (521)
24 PF07240 Turandot: Stress-indu 29.2 22 0.00048 29.5 0.5 31 104-134 27-57 (85)
25 PF01544 CorA: CorA-like Mg2+ 28.6 57 0.0012 31.9 3.4 33 368-400 227-259 (292)
26 COG2978 AbgT Putative p-aminob 27.4 4.4E+02 0.0095 28.8 9.7 34 419-452 466-499 (516)
27 PRK09546 zntB zinc transporter 26.7 64 0.0014 32.9 3.5 28 372-399 261-288 (324)
28 PF14093 DUF4271: Domain of un 25.5 4.8E+02 0.01 24.5 9.1 15 311-325 89-103 (208)
29 PF00528 BPD_transp_1: Binding 25.4 1.4E+02 0.003 26.5 5.2 75 317-398 3-77 (185)
30 PF12271 Chs3p: Chitin synthas 25.2 4.3E+02 0.0093 27.0 8.9 122 276-397 118-247 (293)
31 smart00767 DCD DCD is a plant 24.8 40 0.00087 30.3 1.3 71 38-123 33-110 (132)
32 TIGR00895 2A0115 benzoate tran 24.6 1.2E+02 0.0025 30.3 4.9 24 308-331 291-314 (398)
33 TIGR00881 2A0104 phosphoglycer 24.3 1E+02 0.0023 30.3 4.5 20 309-328 259-278 (379)
34 PF09605 Trep_Strep: Hypotheti 20.9 3.1E+02 0.0068 25.8 6.7 23 377-399 157-179 (186)
35 PRK13755 putative mercury tran 20.0 1.9E+02 0.0042 25.8 4.6 74 273-356 18-95 (139)
No 1
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-143 Score=1108.00 Aligned_cols=436 Identities=39% Similarity=0.701 Sum_probs=410.9
Q ss_pred ccCCCCCCCCCCCCcEEEEEeeecCCCCCCcccccccCCCCCCCCCCccccCCccchhcCCCeeeCCcEEEeccccccee
Q 012281 20 SLASESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHASGNPAHKWGGLGEVLGGNELIDSQIDIKFQRNVDKAS 99 (467)
Q Consensus 20 ~~~~~~~~~Y~~Gd~V~v~vNki~s~~~~~~~y~Yy~lpfC~p~~~~~~~~~slgeiL~Gdr~~~s~y~l~f~~~~~c~~ 99 (467)
..+|.+|..|++||+++++|||++| +++|.||+||++|||+| +++++++|||||+|+|||+++|||+++|++|++|+.
T Consensus 28 ylpG~aPv~f~~gd~i~l~vnklts-~~t~lpY~YY~~~Fc~p-~~i~~~~EnLGeVl~GDRi~nSPy~~~m~e~~~C~~ 105 (628)
T KOG1278|consen 28 YLPGVAPVNFCSGDPIELKVNKLTS-SRTQLPYEYYSLPFCRP-EKIKKQSENLGEVLRGDRIENSPYKFKMLENQPCET 105 (628)
T ss_pred ecCCcCCccCCCCCceEEEEEEeec-cccccCcccccccccCc-cccCCcccchhceeccCcccCCCceEecccCCcchh
Confidence 6699999999999999999999999 89999999999999999 778889999999999999999999999999999999
Q ss_pred eeeeecCHHHHHHHHHHHHcCcEEEEEEeCcceeeee----------------cccCCCCCCCCCeeeeeeeEEEEEEEe
Q 012281 100 ICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFV----------------GDLHPDKNSDNGKHVLYTHKIINFKYN 163 (467)
Q Consensus 100 lC~~~~~~~~~~~l~~~I~~~Y~~~~~iD~LP~~g~i----------------G~~~~~~~~~~~~~yl~nH~~f~I~y~ 163 (467)
+|+.++++++++.++|+|+++|++||.+||||++... |..++. +++++|++||++|+|+||
T Consensus 106 lC~~k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~~~~~~~y~~GfplG~~~~~---~~~~~y~~NHl~~~i~yH 182 (628)
T KOG1278|consen 106 LCATKLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERSDDGKVYYGTGFPLGFKGPK---DEDKYYLHNHLDFVIRYH 182 (628)
T ss_pred hhcccCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeecCCCceEeccCccceeccCC---CccceeEeeeEEEEEEEE
Confidence 9999999999999999999999999999999986321 221111 337899999999999999
Q ss_pred c-----CeEEEEEEEeCC----------------------CCcccCCc--eEEEEEEEEEeec-----------------
Q 012281 164 K-----DQIIHVNLTQDG----------------------PKPLEVGR--TLDMTYSVKWTPT----------------- 197 (467)
Q Consensus 164 ~-----~~IV~~~v~~~~----------------------~~~i~~~~--~i~fTYSV~w~~s----------------- 197 (467)
+ +|||||||+|.| +.++++++ ++.|||||+|+||
T Consensus 183 ~~~~~~~riVgfeV~P~Si~~~~~~~~~~~~~~~c~~~~~~~~~~e~~~~~i~fTYsV~f~esdi~WasRWD~yL~m~~~ 262 (628)
T KOG1278|consen 183 RDDNDKYRIVGFEVKPVSIKHEHEKGDSKNSLPTCSIPEKPLELDEGEETEIVFTYSVKFEESDIKWASRWDYYLHMEDV 262 (628)
T ss_pred ecCCCceEEEEEEEEeeeeecccCCCcccccCCcccCCCCccccCCCCceEEEEEEEEEEEeccCcchhhHHHHhcCCCC
Confidence 5 599999999843 11234555 5999999999997
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhccccchhhhhhhccccCCCeEEeccccCCCCCccceeeeecch
Q 012281 198 NIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLVHGDVFRPPRNLVVLSAVVGTG 277 (467)
Q Consensus 198 ~ihw~Si~NS~~ivl~L~~~v~~Il~r~lr~D~~~y~~~~~~~~~~e~d~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G 277 (467)
+||||||+||+++|++|+++|++|++||||||++|||++|.+ +|.+||+|||+|||||||||+++++||++||+|
T Consensus 263 qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~-----~d~~Ee~GWKLVhGDVFR~P~~~~lLsv~vGsG 337 (628)
T KOG1278|consen 263 QIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLD-----DDAQEESGWKLVHGDVFRPPRNSMLLSVLVGSG 337 (628)
T ss_pred ceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccch-----hhhhhhcceEEeecccccCCCCCeEEEEEeccC
Confidence 999999999999999999999999999999999999988765 478999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcccc-CchhHHHHHHHHHHHhhhccccccceeeeecCCcchhhhhhhhhhhhhHHHHHHHHHH
Q 012281 278 AQLALLVLLVILMAIVGTLYI-GRGAIVTTFIVCYALTSFISGYVSGGMYSRNGGKNWIKSMILTASLFPFMVFGIGFLL 356 (467)
Q Consensus 278 ~Qll~~~~~~l~~a~lg~~~~-~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~il 356 (467)
+|+++|+++++++|++|+++| +||+++|+++++|+++|++|||+|+|+||+++|++||+++++|++++||+++++++++
T Consensus 338 vQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~~~~lta~l~PGivf~~~f~l 417 (628)
T KOG1278|consen 338 VQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKRNAILTAFLFPGIVFAIFFVL 417 (628)
T ss_pred hhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchhhHHhhhhhcchHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCccChhHHHHHHHHHHHhhhhhhhhhhhhhcccCCCCCCCcccCCCCCCCCCCCCccccchhhhhccccc
Q 012281 357 NTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLP 436 (467)
Q Consensus 357 N~i~~~~~Ss~aipf~ti~~ll~lw~~v~~PL~~lG~~~g~~~~~~~~~P~~~n~ipR~IP~qpwy~~~~~~~l~~GilP 436 (467)
|++.|+++||+|+||+|+++++++|++||+||+++||++|+| ++++|+|+||||||||||+||||+++.+++++||++|
T Consensus 418 N~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~k-k~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilP 496 (628)
T KOG1278|consen 418 NFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFK-KPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILP 496 (628)
T ss_pred HHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhcc-CCCCCCCcccCCCcccCCCCccccchhhHHHhhcccc
Confidence 999999999999999999999999999999999999999999 7888999999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHhhcCCcceeEEEEeeec
Q 012281 437 FGSIFIEMYFVFTSFWNYKVNFSTSCLGAS 466 (467)
Q Consensus 437 F~~i~iEl~fi~~S~W~~~~yy~fgfL~~~ 466 (467)
||+|||||+||++|+|.||+||+||||+++
T Consensus 497 Fg~ifIELfFI~~SiW~~qfYY~FGFLFlv 526 (628)
T KOG1278|consen 497 FGAIFIELFFILSSIWLNQFYYMFGFLFLV 526 (628)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999999999999999864
No 2
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-139 Score=1050.80 Aligned_cols=462 Identities=58% Similarity=1.029 Sum_probs=441.6
Q ss_pred hhhHHHHHHHHHHh-----hcccCCCCCCCCCCCCcEEEEEeeecCCCCCCcccccccCCCCCCC-CCCccccCCccchh
Q 012281 4 AARSLSLFLLLLFV-----SPSLASESDHKYQQDEPVTLWVNKVGPYNNPQETYNYYSLPFCHAS-GNPAHKWGGLGEVL 77 (467)
Q Consensus 4 ~~~~~~~~~~~~~~-----~~~~~~~~~~~Y~~Gd~V~v~vNki~s~~~~~~~y~Yy~lpfC~p~-~~~~~~~~slgeiL 77 (467)
.+|+.++.++++++ .++.+++++|.|++||+|++|+||++|++||||+|.||+||||.++ ++++++||+|||+|
T Consensus 4 ~~~s~a~l~l~lLll~~g~~~~~ade~dh~Yk~~e~VvLw~NkVGPyhNpqETY~YfsLPfC~g~~~~i~hk~etLGEvL 83 (593)
T KOG1277|consen 4 NVRSWAALLLPLLLLSLGTGLVRADESDHRYKDGEEVVLWMNKVGPYHNPQETYRYFSLPFCSGSKESISHKHETLGEVL 83 (593)
T ss_pred cccchHHHHHHHHHHHccCCcccccccccccccCCeeEEEEeccCCCCChhhhceeeccceecCCCcccchhhhhHHhhh
Confidence 34555544443333 2388999999999999999999999999999999999999999853 56788999999999
Q ss_pred cCCCeeeCCcEEEecccccceeeeeeecCHHHHHHHHHHHHcCcEEEEEEeCcceeeeecccCCCCCCCCCeeeeeeeEE
Q 012281 78 GGNELIDSQIDIKFQRNVDKASICSLDLDEAKVKQFKDAIENNYWFEFFLDDLPLWGFVGDLHPDKNSDNGKHVLYTHKI 157 (467)
Q Consensus 78 ~Gdr~~~s~y~l~f~~~~~c~~lC~~~~~~~~~~~l~~~I~~~Y~~~~~iD~LP~~g~iG~~~~~~~~~~~~~yl~nH~~ 157 (467)
.|||+..|+|+++|++|++.+++|++++++++++.++++|+|+|++||++||||+||++|+.|+++.++++++||+||.+
T Consensus 84 ~G~eL~~s~y~ikF~~~v~~~v~C~~~L~~e~v~~f~~AI~~~Yyfqmy~DdlPIwGfvGe~d~~k~~~~~ky~L~thk~ 163 (593)
T KOG1277|consen 84 QGDELEFSGYEIKFRDNVEKEVYCEKKLSEEKVKAFRYAIENDYYFQMYIDDLPIWGFVGEVDEDKLDNEGKYYLYTHKK 163 (593)
T ss_pred CCceeeecceeeeecccCCceeeehhhcCHHHHHHHHHHHHhhheeeeeecCceeeeEeeeeccccCCCCCceEEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999887554458999999999
Q ss_pred EEEEEecCeEEEEEEEeCCCCcccCCceEEEEEEEEEeec-------------------cchhhhhhhhHHHHHHHHHHH
Q 012281 158 INFKYNKDQIIHVNLTQDGPKPLEVGRTLDMTYSVKWTPT-------------------NIHWFSIFNSFMMVIFLTGLV 218 (467)
Q Consensus 158 f~I~y~~~~IV~~~v~~~~~~~i~~~~~i~fTYSV~w~~s-------------------~ihw~Si~NS~~ivl~L~~~v 218 (467)
|.|.||+||||+++++.++...+.+++.++|||||+|++| +||||||+||+++|+||+|+|
T Consensus 164 f~i~yn~drii~vnlt~~~~v~L~~~~~~~~tYsV~W~~t~v~f~~rfdkyld~~ff~h~IHWfSIfNSfmmVifLvGlv 243 (593)
T KOG1277|consen 164 FEIGYNGDRIIDVNLTTHGLVDLRPDKKLTFTYSVKWKETEVEFEKRFDKYLDPSFFPHRIHWFSIFNSFMMVIFLVGLV 243 (593)
T ss_pred EEEeecCceEEEEEeeecccccCCCCCCCceEEEEEeeeccCcHHHHhHhhcccccccceeehhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 899999999999999999999
Q ss_pred HHHHHHHHhhhHhhhhccccchhhhhhhccccCCCeEEeccccCCCCCccceeeeecchhHHHHHHHHHHHHHHHhcccc
Q 012281 219 SMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLVHGDVFRPPRNLVVLSAVVGTGAQLALLVLLVILMAIVGTLYI 298 (467)
Q Consensus 219 ~~Il~r~lr~D~~~y~~~~~~~~~~e~d~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~lg~~~~ 298 (467)
++||||+||||++||+++|+++|++|+|++||.|||+|||||||||+|+.|||+++|+|+|++..+++++++|++|.+++
T Consensus 244 amILMRtLrnDyarY~~dee~~d~~d~d~~~E~GWK~vHgDVFR~p~~~~Lfsa~lGsG~Qlf~l~~~ii~~Alvg~fy~ 323 (593)
T KOG1277|consen 244 AMILMRTLRNDYARYAKDEEALDDMDRDDQEEYGWKQVHGDVFRFPSHPLLFSAVLGSGAQLFTLVLIIIMLALVGVFYT 323 (593)
T ss_pred HHHHHHHHHHHHHHhccchhhhccccccccccccceeeecccccCCCccHHHHHHhccccchHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhhhccccccceeeeecCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCCccChhHHHHHH
Q 012281 299 GRGAIVTTFIVCYALTSFISGYVSGGMYSRNGGKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVF 378 (467)
Q Consensus 299 ~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~ilN~i~~~~~Ss~aipf~ti~~ll 378 (467)
.||++++++|++|++||.++||+||++|.+.||++|.||+++|++++|+++++.++++|+++|.++|++|+||+|++.++
T Consensus 324 ~rGal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wik~m~lta~Lfp~~~~~t~~~~N~vai~y~at~AlPfgt~v~v~ 403 (593)
T KOG1277|consen 324 ERGALLSAAIVVYALTSPINGYVSGSFYARLGGRRWIKNMLLTASLFPVPVFGTAFLLNTVAIAYGATAALPFGTIVVVL 403 (593)
T ss_pred cchHHHHHHHHHHHhcccccccccceeeehhccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccccCccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhcccCCCCCCCcccCCCCCCCCCCCCccccchhhhhccccchhhHhHHHHHHHHhhcCCccee
Q 012281 379 VIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVNF 458 (467)
Q Consensus 379 ~lw~~v~~PL~~lG~~~g~~~~~~~~~P~~~n~ipR~IP~qpwy~~~~~~~l~~GilPF~~i~iEl~fi~~S~W~~~~yy 458 (467)
++|++|..||+++|+++|++++.++++||||+.+||+||++|||++|.+.+++||+|||++||||++|||+|+|.+|+||
T Consensus 404 ~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~~~~gG~LPFgsIfIEmYfIFtSfW~ykiYy 483 (593)
T KOG1277|consen 404 LIWLFVISPLTVLGGIAGKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVIMLMGGFLPFGSIFIEMYFIFTSFWGYKIYY 483 (593)
T ss_pred HHHHHHhchHHHcccccccccccCCCCCcccccCCCCCCCccccccchHHHHhhccCccchhhhhHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeee
Q 012281 459 STSCLGA 465 (467)
Q Consensus 459 ~fgfL~~ 465 (467)
+|||+++
T Consensus 484 vYgfm~l 490 (593)
T KOG1277|consen 484 VYGFMFL 490 (593)
T ss_pred HHHHHHH
Confidence 9999864
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=9.5e-122 Score=985.90 Aligned_cols=411 Identities=47% Similarity=0.873 Sum_probs=385.3
Q ss_pred cccccccCCCCCCCCCCccccCCccchhcCCCeeeCCcEEEecccccceeeeeeecCHHHHHHHHHHHHcCcEEEEEEeC
Q 012281 50 ETYNYYSLPFCHASGNPAHKWGGLGEVLGGNELIDSQIDIKFQRNVDKASICSLDLDEAKVKQFKDAIENNYWFEFFLDD 129 (467)
Q Consensus 50 ~~y~Yy~lpfC~p~~~~~~~~~slgeiL~Gdr~~~s~y~l~f~~~~~c~~lC~~~~~~~~~~~l~~~I~~~Y~~~~~iD~ 129 (467)
.|||||+||||+|+++.+++++||||+|+|||+++|||+++|++|++|+.+|+++++++|+++++++|+|+|++||+|||
T Consensus 1 l~Y~Yy~lPfC~P~~~~~~~~~slGevL~Gdr~~~S~y~i~f~~~~~c~~lC~~~l~~~~~~~l~~~I~~~Y~~~~~vD~ 80 (521)
T PF02990_consen 1 LPYDYYDLPFCRPEEGIEHKSESLGEVLRGDRIQNSPYEIKFLQNVTCKVLCKKTLTKEDVKKLKEAIENNYRVEMYVDD 80 (521)
T ss_pred CCccccCCCCcCCCCccccccCCHHHHhccCceecCceEEEEecCcchhhccCccCCHHHHHHHHHHHHHhheeeEEecC
Confidence 58999999999994448889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeecccCC----------CCCCCCCeeeeeeeEEEEEEEe----c-CeEEEEEEEe------------CCCCcccC
Q 012281 130 LPLWGFVGDLHP----------DKNSDNGKHVLYTHKIINFKYN----K-DQIIHVNLTQ------------DGPKPLEV 182 (467)
Q Consensus 130 LP~~g~iG~~~~----------~~~~~~~~~yl~nH~~f~I~y~----~-~~IV~~~v~~------------~~~~~i~~ 182 (467)
||+++.+|+.+. .+..+++++|||||++|+|+|| + +|||||||+| ++++.+++
T Consensus 81 LP~~~~~~~~~~~~~~y~~G~~~g~~~~~~~~l~NH~~f~I~Yn~~~~~~~~IVgf~v~p~Si~~~~C~~~~~~~~~l~~ 160 (521)
T PF02990_consen 81 LPIAGFIGSVDGCDKGYPIGFPLGFKDDNKYYLYNHLDFTIRYNQESNGDYRIVGFEVTPRSIDHSTCPGNESSPQELPE 160 (521)
T ss_pred ceEEEEecccCCcceecCCCcccCcccCCcceeEeEEEEEEEEECCCCCceEEEEEEEEeccccCccccccCCCCeeccC
Confidence 999998877653 1112237899999999999999 3 4999999999 44556666
Q ss_pred Cc---eEEEEEEEEEeec------------------cchhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHhhhhccccchh
Q 012281 183 GR---TLDMTYSVKWTPT------------------NIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLE 241 (467)
Q Consensus 183 ~~---~i~fTYSV~w~~s------------------~ihw~Si~NS~~ivl~L~~~v~~Il~r~lr~D~~~y~~~~~~~~ 241 (467)
++ +|+|||||+|+++ ++||+||+||+++|++|+++|++|++|++|||++|||+++++
T Consensus 161 ~~~~~~i~fTYSV~w~~s~~~w~~Rwd~Yl~~~~~~~ihw~SiiNS~iivl~L~~~v~~Il~R~l~~D~~~y~~~~~~-- 238 (521)
T PF02990_consen 161 DKEADNITFTYSVKWEESDVPWASRWDKYLDSMFDSQIHWFSIINSFIIVLFLSGLVAIILLRTLRRDISRYNDEDSE-- 238 (521)
T ss_pred CCcccEEEEEEEEEEEecCCchhhccccccccccCCceEEEeHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc--
Confidence 55 5999999999986 789999999999999999999999999999999999988764
Q ss_pred hhhhhccccCCCeEEeccccCCCCCccceeeeecchhHHHHHHHHHHHHHHHhcccc-CchhHHHHHHHHHHHhhhcccc
Q 012281 242 TLERDVSEESGWKLVHGDVFRPPRNLVVLSAVVGTGAQLALLVLLVILMAIVGTLYI-GRGAIVTTFIVCYALTSFISGY 320 (467)
Q Consensus 242 ~~e~d~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~lg~~~~-~rg~l~t~~i~~y~~~~~iaGy 320 (467)
+|++||+|||+|||||||||+|+++||+++|+|+|+++|+++++++|++|+++| +||+++++++++|+++|++|||
T Consensus 239 ---~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy 315 (521)
T PF02990_consen 239 ---EDDQEESGWKLVHGDVFRPPKHPMLLSALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGY 315 (521)
T ss_pred ---cccccccchhhhhHHHhcCcCCchHHHhHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHH
Confidence 377999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred ccceeeeecCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCCccChhHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q 012281 321 VSGGMYSRNGGKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWS 400 (467)
Q Consensus 321 ~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~ilN~i~~~~~Ss~aipf~ti~~ll~lw~~v~~PL~~lG~~~g~~~~ 400 (467)
+|||+||+++|++||+++++|++++|++++++++++|+++|.++||+|+||+|++.++++|++|++||+++||++|+|.+
T Consensus 316 ~S~~~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~ 395 (521)
T PF02990_consen 316 VSARLYKSFGGKKWKKNSILTSLLFPGILFSIFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNP 395 (521)
T ss_pred HHHHHHHHcCCCceeehhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999844
Q ss_pred CCCCCCcccCCCCCCCCCCCCccccchhhhhccccchhhHhHHHHHHHHhhcCCcceeEEEEeee
Q 012281 401 GAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVNFSTSCLGA 465 (467)
Q Consensus 401 ~~~~~P~~~n~ipR~IP~qpwy~~~~~~~l~~GilPF~~i~iEl~fi~~S~W~~~~yy~fgfL~~ 465 (467)
+..++|||+|+||||||+||||+++++.++++|++||++|++||+||++|+|.+|+||+||||++
T Consensus 396 ~~~~~p~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~~y~~fgfl~~ 460 (521)
T PF02990_consen 396 PIDEFPCRTNQIPRQIPPQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWSNKFYYLFGFLLL 460 (521)
T ss_pred ccccCCcCCCCCCCcCCCCccccCCccceeecchHHHHHHHHHHHHHHHHhhcCcceEEehHHHH
Confidence 33399999999999999999999999999999999999999999999999999999999999975
No 4
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=79.78 E-value=2.5 Score=36.86 Aligned_cols=77 Identities=19% Similarity=0.456 Sum_probs=56.0
Q ss_pred eeeecchhHHHHHHHHHHHHHHHhcccc-CchhHHHHHHHHHHHhhhccccccceeeeecCCcchhhhhhhhhhhhhHHH
Q 012281 271 SAVVGTGAQLALLVLLVILMAIVGTLYI-GRGAIVTTFIVCYALTSFISGYVSGGMYSRNGGKNWIKSMILTASLFPFMV 349 (467)
Q Consensus 271 s~lvG~G~Qll~~~~~~l~~a~lg~~~~-~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~ 349 (467)
+++-|.-.-+..+.+..+++|.+-.+.+ +.+.+-....+.++++.+++|++++|. -+.|.|.+= ..++.++=.++
T Consensus 6 ~vl~g~~~~~~~tl~~~l~~a~ll~~~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~---~~~kG~l~G-~~~Gl~y~~il 81 (116)
T PF12670_consen 6 AVLKGLLVAYIITLILLLLLALLLYFTSLSESILPWLVVIIYILSVFIGGFYAGRK---AGSKGWLHG-LLVGLLYFLIL 81 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HccchHHHH-HHHHHHHHHHH
Confidence 3445666777788888888888766666 788888888899999999999999976 456778753 55555444443
Q ss_pred HH
Q 012281 350 FG 351 (467)
Q Consensus 350 ~~ 351 (467)
+.
T Consensus 82 ~l 83 (116)
T PF12670_consen 82 LL 83 (116)
T ss_pred HH
Confidence 33
No 5
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=72.90 E-value=18 Score=35.59 Aligned_cols=39 Identities=18% Similarity=0.410 Sum_probs=22.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCCCccChhHHHHHHHHHHHhh
Q 012281 340 LTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFIS 385 (467)
Q Consensus 340 lt~~l~P~~~~~i~~ilN~i~~~~~Ss~aipf~ti~~ll~lw~~v~ 385 (467)
++..++|+...++.++- . .+...+...++.+.++|+-+.
T Consensus 199 ln~~ll~~~~~~l~i~s----~---~t~~~q~la~lvl~~I~iyi~ 237 (248)
T PF11368_consen 199 LNQYLLPILYILLFIYS----L---LTGENQLLAILVLIIIWIYIN 237 (248)
T ss_pred HHHHHHHHHHHHHHHHH----H---HcCCccHHHHHHHHHHHHHHH
Confidence 34456677665554332 1 134455666677777887553
No 6
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=59.69 E-value=24 Score=38.57 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=41.8
Q ss_pred chhHHHHHHHHHHHHHH--Hhcccc-Cch-----hHHH----HHHHHHHHhhhccccccceeeeecCCcchhhhhhhhhh
Q 012281 276 TGAQLALLVLLVILMAI--VGTLYI-GRG-----AIVT----TFIVCYALTSFISGYVSGGMYSRNGGKNWIKSMILTAS 343 (467)
Q Consensus 276 ~G~Qll~~~~~~l~~a~--lg~~~~-~rg-----~l~t----~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~ 343 (467)
.|+-++..++...++.+ -|.++. +.| .+++ ...++|.+.|.+-|+.++++.+ .++..+.+.-..-
T Consensus 265 Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~GivyG~~~g~iks---~~Dv~~~m~~g~~ 341 (508)
T PRK11339 265 AGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIRR---QADLPHLMIEPMK 341 (508)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHHHHHhhhcccccC---HHHHHHHHHHHHH
Confidence 56655555444333321 444442 224 5566 6667778888888887776533 2333222222222
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 012281 344 LFPFMVFGIGFLLNTIAIF 362 (467)
Q Consensus 344 l~P~~~~~i~~ilN~i~~~ 362 (467)
-.-+.++.+++.-.++++.
T Consensus 342 ~m~~~ivl~F~~Aqfia~F 360 (508)
T PRK11339 342 EMAGFIVMVFPLAQFVAMF 360 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2223333444555555553
No 7
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=54.97 E-value=43 Score=37.49 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=35.2
Q ss_pred ecchhHHHHHHHHHHHHHHHhcccc--CchhHHHHHHHHHHHhhhccccccceeeeecCCcchhhhhhhhhhh
Q 012281 274 VGTGAQLALLVLLVILMAIVGTLYI--GRGAIVTTFIVCYALTSFISGYVSGGMYSRNGGKNWIKSMILTASL 344 (467)
Q Consensus 274 vG~G~Qll~~~~~~l~~a~lg~~~~--~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l 344 (467)
+|.|.|.+...+ ++-+.| .|+--....-+.++....++|.++.++.. ...|+++..+....
T Consensus 143 vgaG~~~~~~~~-------isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~ 205 (599)
T PF06609_consen 143 VGAGVQELAALA-------ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIW 205 (599)
T ss_pred HhhHHHHHHHHH-------HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHH
Confidence 367777653321 233334 55444444444556666778888877654 35799877665443
No 8
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=53.53 E-value=76 Score=34.77 Aligned_cols=146 Identities=16% Similarity=0.299 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhhhccccccceeeeecCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCC-------------Ccc
Q 012281 303 IVTTFIVCYALTSFISGYVSGGMYSRNGGKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSL-------------AAI 369 (467)
Q Consensus 303 l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~ilN~i~~~~~Ss-------------~ai 369 (467)
+.....++|.+.|.+=|+.|+++- +.++..+.+.-..--....+...++...++++.+.|. .+.
T Consensus 299 IIpiI~l~F~i~GivYG~~sG~ik---s~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~ 375 (502)
T PF03806_consen 299 IIPIIFLFFLIPGIVYGIASGTIK---SDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSL 375 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhceec---CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhc
Confidence 344445556667777777666542 1233333333333334445555666666777666664 122
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhhhhhcccC----------------CCCCC------CcccCCCCCCCCC--------C
Q 012281 370 PFGTMVVVFVIWAFISFPLALLGTVVGRNWS----------------GAPNN------PCRVKTIPRPIPE--------K 419 (467)
Q Consensus 370 pf~ti~~ll~lw~~v~~PL~~lG~~~g~~~~----------------~~~~~------P~~~n~ipR~IP~--------q 419 (467)
.+..+..++.+-++.++==-++||--+ ||. ++..+ -.-||.|-=.-|. |
T Consensus 376 ~~~~~~l~i~fill~a~iNLfi~S~Sa-KWailAPifVPM~m~lg~sP~~tQ~aYRigDS~TN~ItPl~~yf~lil~~~q 454 (502)
T PF03806_consen 376 GLPGIPLIIGFILLTAFINLFIGSASA-KWAILAPIFVPMFMLLGYSPALTQAAYRIGDSSTNIITPLMPYFPLILGFAQ 454 (502)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhcchh-hHHHHHhHHHHHHHHcCCCHHHHHHHHHhccccccccCccHHHHHHHHHHHH
Confidence 233333333333333332333343332 221 00000 1135655332222 3
Q ss_pred CCccccchhhhhccccchhhHhHHHHHHHHhhc
Q 012281 420 KWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFW 452 (467)
Q Consensus 420 pwy~~~~~~~l~~GilPF~~i~iEl~fi~~S~W 452 (467)
++..+.-...+++-.+|+...+.=.--++--+|
T Consensus 455 kY~k~~giGTlis~mlPysi~~lv~w~~ll~~W 487 (502)
T PF03806_consen 455 KYDKKAGIGTLISLMLPYSIAFLVVWTLLLIVW 487 (502)
T ss_pred HhCcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455567778888898887766666666666
No 9
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=51.58 E-value=18 Score=25.97 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=29.9
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCC
Q 012281 331 GKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGS 365 (467)
Q Consensus 331 g~~W~~~~~lt~~l~P~~~~~i~~ilN~i~~~~~S 365 (467)
.++|+...+++..++|.+.......--++.|..+-
T Consensus 2 ~~El~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 2 RMELNTFLFLAAVIWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999988888888887653
No 10
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=50.87 E-value=14 Score=34.46 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 012281 208 FMMVIFLTGLVSMILMRTLR 227 (467)
Q Consensus 208 ~~ivl~L~~~v~~Il~r~lr 227 (467)
.+++.+-+.++.++++|++|
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445556667777778875
No 11
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.95 E-value=2.1e+02 Score=31.80 Aligned_cols=154 Identities=19% Similarity=0.318 Sum_probs=88.3
Q ss_pred ccceeeeecchhHHHHHHHHHHHHHHHhcccc--CchhHHHHHHHHHHH----hhhccccccceeee------------e
Q 012281 267 LVVLSAVVGTGAQLALLVLLVILMAIVGTLYI--GRGAIVTTFIVCYAL----TSFISGYVSGGMYS------------R 328 (467)
Q Consensus 267 ~~lls~lvG~G~Qll~~~~~~l~~a~lg~~~~--~rg~l~t~~i~~y~~----~~~iaGy~S~~~yk------------~ 328 (467)
..++++++=-|+-++..++. =+-+.|.-|. -.=+.+-+++++|.+ .++++||++-|-=. +
T Consensus 398 ~~~lta~l~PGivf~~~f~l--N~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRq 475 (628)
T KOG1278|consen 398 NAILTAFLFPGIVFAIFFVL--NFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQ 475 (628)
T ss_pred hHHhhhhhcchHHHHHHHHH--HHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCccc
Confidence 45677777777765443322 2222333332 122334456666655 45778888766431 2
Q ss_pred cCCcchhhh---hhhhhhhhhHHHHH--HHHHHHHHHHHhCCCCccChhHHHHHHHHHHHhhhhhhhhhhhhhcccCCCC
Q 012281 329 NGGKNWIKS---MILTASLFPFMVFG--IGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAP 403 (467)
Q Consensus 329 ~~g~~W~~~---~~lt~~l~P~~~~~--i~~ilN~i~~~~~Ss~aipf~ti~~ll~lw~~v~~PL~~lG~~~g~~~~~~~ 403 (467)
.-.++|..+ .++-+..+|.-+.. +++++|.+ |.+ .--.=||-++.++.+....|.=.++++.|+-.- .+.
T Consensus 476 IP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~Si-W~~--qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC-~Ed- 550 (628)
T KOG1278|consen 476 IPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSI-WLN--QFYYMFGFLFLVFIILVVTCAEISIVLTYFQLC-AED- 550 (628)
T ss_pred CCCCccccchhhHHHhhcccchHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-
Confidence 334567543 35556667764443 56677766 544 223336777777777888888888999998764 221
Q ss_pred CCCcccCCCCCCCCCCCCccccchhhhhccccchhhHhHHHHHHH
Q 012281 404 NNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVF 448 (467)
Q Consensus 404 ~~P~~~n~ipR~IP~qpwy~~~~~~~l~~GilPF~~i~iEl~fi~ 448 (467)
-.|.=| +.+++|. +++|+++|-|+
T Consensus 551 ---------------y~WwWR---sF~~sG~---~avY~fiYsi~ 574 (628)
T KOG1278|consen 551 ---------------YNWWWR---SFLTSGS---SAVYVFIYSIF 574 (628)
T ss_pred ---------------cceeee---eeeccCc---chhhHHHHHHh
Confidence 134423 3456665 88888887654
No 12
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=46.83 E-value=77 Score=27.73 Aligned_cols=22 Identities=14% Similarity=0.537 Sum_probs=14.8
Q ss_pred CcchhhhhhhhhhhhhHHHHHHH
Q 012281 331 GKNWIKSMILTASLFPFMVFGIG 353 (467)
Q Consensus 331 g~~W~~~~~lt~~l~P~~~~~i~ 353 (467)
.++|++. +..+..++..+..++
T Consensus 111 ~r~~~~~-~~~s~~~~~~i~~~F 132 (141)
T PF07331_consen 111 ERRWLRL-LLISVVFAAVIYFVF 132 (141)
T ss_pred CCcHHHH-HHHHHHHHHHHHHHH
Confidence 6789875 455667777666555
No 13
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=44.52 E-value=21 Score=27.25 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=30.4
Q ss_pred cCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhC
Q 012281 329 NGGKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYG 364 (467)
Q Consensus 329 ~~g~~W~~~~~lt~~l~P~~~~~i~~ilN~i~~~~~ 364 (467)
-++++|+...+++..++|.+..++...--++.|..+
T Consensus 13 ~k~~E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q 48 (56)
T PF06796_consen 13 TKRSELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQ 48 (56)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999888888888654
No 14
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=43.65 E-value=22 Score=26.17 Aligned_cols=35 Identities=11% Similarity=-0.021 Sum_probs=29.7
Q ss_pred CCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhC
Q 012281 330 GGKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYG 364 (467)
Q Consensus 330 ~g~~W~~~~~lt~~l~P~~~~~i~~ilN~i~~~~~ 364 (467)
+.++|+...+++..++|.+.......--++.|..+
T Consensus 6 k~~El~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q 40 (47)
T TIGR02972 6 RSNELKALGFIIVVLFPILSVAGIGGYGFIIWMIQ 40 (47)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999998888888888754
No 15
>COG5393 Predicted membrane protein [Function unknown]
Probab=42.72 E-value=32 Score=30.30 Aligned_cols=43 Identities=28% Similarity=0.231 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHhccc----------c-Cch-hHHHHHHHHHHHhhhcccc
Q 012281 278 AQLALLVLLVILMAIVGTLY----------I-GRG-AIVTTFIVCYALTSFISGY 320 (467)
Q Consensus 278 ~Qll~~~~~~l~~a~lg~~~----------~-~rg-~l~t~~i~~y~~~~~iaGy 320 (467)
.|+++|...++.|+.+|..+ | +|= .......++|+++.+.+++
T Consensus 48 l~lllm~gLtl~fa~~~lmsL~vLvi~~f~~tyRl~a~~a~~~vl~vl~~i~ciW 102 (131)
T COG5393 48 LQLLLMAGLTLLFAAFGLMSLMVLVIWAFDPTYRLNAMIATTAVLLVLALIGCIW 102 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666655433 5 663 6667777778887777765
No 16
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=41.61 E-value=10 Score=31.80 Aligned_cols=26 Identities=23% Similarity=0.815 Sum_probs=21.7
Q ss_pred CCCccccchhhhhccccchhhHhHHH
Q 012281 419 KKWYLTPSVVSMMGGLLPFGSIFIEM 444 (467)
Q Consensus 419 qpwy~~~~~~~l~~GilPF~~i~iEl 444 (467)
+.|-.+.....+++|++||++...|-
T Consensus 62 ~rW~~~~~~~~llas~iPfg~f~~er 87 (92)
T PF12823_consen 62 YRWSLKRTLLALLASVIPFGTFWFER 87 (92)
T ss_pred cCCChHHHHHHHHHHcccccHHHHHH
Confidence 34767777889999999999999884
No 17
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=41.29 E-value=84 Score=29.95 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcccc-CchhHHHHHHHHHHHhhhccccccceeeee
Q 012281 284 VLLVILMAIVGTLYI-GRGAIVTTFIVCYALTSFISGYVSGGMYSR 328 (467)
Q Consensus 284 ~~~~l~~a~lg~~~~-~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~ 328 (467)
.+.+++.+.++++++ ++... .+..-++.++++|.+-..+++.
T Consensus 91 ~if~~~~gi~~~f~~~~~~~~---gi~tli~~~i~~G~~~~~~~~~ 133 (206)
T PF06570_consen 91 GIFSLLFGIMGFFSPKNSNQY---GIITLILVSIVGGLVFYFIFKY 133 (206)
T ss_pred HHHHHHHHHHHHHhhcccccc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777887776 22211 2233333445555555545543
No 18
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=39.59 E-value=9.7 Score=38.41 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHhhhcc--ccccceeeeecCCcchhhhhhhhhhhhhHHHHH
Q 012281 300 RGAIVTTFIVCYALTSFIS--GYVSGGMYSRNGGKNWIKSMILTASLFPFMVFG 351 (467)
Q Consensus 300 rg~l~t~~i~~y~~~~~ia--Gy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~ 351 (467)
.|-.+-..+++++++-..| =+.=..+.+..+..-|...+++-++++-.+++.
T Consensus 101 tGQ~LF~Gi~~l~l~~lLaL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLI 154 (381)
T PF05297_consen 101 TGQTLFVGIVILFLCCLLALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLI 154 (381)
T ss_dssp ------------------------------------------------------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333 222233455677788876555544444433333
No 19
>PF13347 MFS_2: MFS/sugar transport protein
Probab=37.75 E-value=1.1e+02 Score=31.92 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=44.2
Q ss_pred ccccCCCeEEeccccCCCCCccceeeee--cchhHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHhhhccccccce
Q 012281 247 VSEESGWKLVHGDVFRPPRNLVVLSAVV--GTGAQLALLVLLVILMAIVGTLYIGRGAIVTTFIVCYALTSFISGYVSGG 324 (467)
Q Consensus 247 ~~ee~GWKlvhgDVFR~P~~~~lls~lv--G~G~Qll~~~~~~l~~a~lg~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~ 324 (467)
.++..++|..-..+||.|+...++.+.. ..|..+......-..-..+ +.++..+.....+.+.++++....++
T Consensus 208 ~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl-----~~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (428)
T PF13347_consen 208 QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL-----GNEGLISIFMLIFFVASIVGSPLWGR 282 (428)
T ss_pred cccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh-----cCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677888877655533322 1222222111111111111 23355566666677778888888888
Q ss_pred eeeecCCcc
Q 012281 325 MYSRNGGKN 333 (467)
Q Consensus 325 ~yk~~~g~~ 333 (467)
+-|+++.++
T Consensus 283 l~~r~gk~~ 291 (428)
T PF13347_consen 283 LSKRFGKKK 291 (428)
T ss_pred HHHHcccee
Confidence 888886665
No 20
>PRK11588 hypothetical protein; Provisional
Probab=35.78 E-value=2.7e+02 Score=30.64 Aligned_cols=27 Identities=4% Similarity=0.058 Sum_probs=21.3
Q ss_pred CchhHHHHHHHHHHHhhhcccccccee
Q 012281 299 GRGAIVTTFIVCYALTSFISGYVSGGM 325 (467)
Q Consensus 299 ~rg~l~t~~i~~y~~~~~iaGy~S~~~ 325 (467)
+.|...+=...+|.++|++.|.+++.+
T Consensus 306 ~~gW~~~Eia~~Fl~~giv~G~i~~~~ 332 (506)
T PRK11588 306 VNAWFIPEIASQFFTMGLVIGLIGVVF 332 (506)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhhh
Confidence 456677777788999999999987644
No 21
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=32.97 E-value=1.3e+02 Score=29.84 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=46.1
Q ss_pred ecchhHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHhhhccccccce-------------------eeeecCCcch
Q 012281 274 VGTGAQLALLVLLVILMAIVGTLYIGRGAIVTTFIVCYALTSFISGYVSGG-------------------MYSRNGGKNW 334 (467)
Q Consensus 274 vG~G~Qll~~~~~~l~~a~lg~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~-------------------~yk~~~g~~W 334 (467)
||++.-++..+++.++|-.+||+ +.|+++-..||-.+|+ ++-.++|.+|
T Consensus 157 vGnd~~F~~af~vAflFnwIGFl------------ltycl~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~w 224 (262)
T KOG4812|consen 157 VGNDGIFMWAFIVAFLFNWIGFL------------LTYCLTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQYW 224 (262)
T ss_pred cccchHHHHHHHHHHHHHHHHHH------------HHHHHHhhHhhhhhhhhccchhhheeeEEeecccccccccccchH
Confidence 79999999888888888888863 4566665555554443 3334778889
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHH
Q 012281 335 IKSMILTASLFPFMVFGIGFLLNTIA 360 (467)
Q Consensus 335 ~~~~~lt~~l~P~~~~~i~~ilN~i~ 360 (467)
.+..++ +-|+++.+--++|.+.
T Consensus 225 Lwwi~~----vlG~ll~lr~~i~Yik 246 (262)
T KOG4812|consen 225 LWWIFL----VLGLLLFLRGFINYIK 246 (262)
T ss_pred HHHHHH----HHHHHHHHHHHHhHHH
Confidence 876443 2344444444556553
No 22
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=32.11 E-value=1.7e+02 Score=32.32 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=32.0
Q ss_pred chhHHHHHHHHHHHHHHH---hcccc-Cc---------hhHHHHHHHHHHHhhhcccccccee
Q 012281 276 TGAQLALLVLLVILMAIV---GTLYI-GR---------GAIVTTFIVCYALTSFISGYVSGGM 325 (467)
Q Consensus 276 ~G~Qll~~~~~~l~~a~l---g~~~~-~r---------g~l~t~~i~~y~~~~~iaGy~S~~~ 325 (467)
.|+-++..+++.+ +.++ |.++. .. +++.....++|.+.|++.|.+++++
T Consensus 267 Ag~~~l~fia~l~-ll~~P~~g~LR~~~tG~l~~SPf~~~iipii~~~Fli~givyG~~~g~i 328 (513)
T TIGR00819 267 AGVVFIAFIAAIA-LMIIPADGILRDPENGLVAGSPFIKGIVPFIFLFFALPGIAYGIATRSI 328 (513)
T ss_pred HHHHHHHHHHHHH-HHHHcCCCcccCCCCCCccCChHHHhHHHHHHHHHHHHHHHHHhhcCcc
Confidence 5666665554433 3345 55542 11 5677788888999999999888754
No 23
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=29.86 E-value=5.1e+02 Score=28.43 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=38.5
Q ss_pred hhhhhhhhHHHHH--HHHHHHHHHHHhCCCCccChhHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 012281 339 ILTASLFPFMVFG--IGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRN 398 (467)
Q Consensus 339 ~lt~~l~P~~~~~--i~~ilN~i~~~~~Ss~aipf~ti~~ll~lw~~v~~PL~~lG~~~g~~ 398 (467)
++.+.++|..... +.++++. .|.++ --..|+-++..+++.++++.=.+++..|+-..
T Consensus 424 ~l~~G~lPF~~i~iEl~~i~~s-~W~~~--~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L~ 482 (521)
T PF02990_consen 424 ILIGGILPFGAIFIELYFIFSS-LWSNK--FYYLFGFLLLVFILLIITCAEVSIILTYFQLC 482 (521)
T ss_pred eeecchHHHHHHHHHHHHHHHH-hhcCc--ceEEehHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555654433 2334444 46655 44557888888889999999999999998776
No 24
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=29.22 E-value=22 Score=29.50 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=25.8
Q ss_pred ecCHHHHHHHHHHHHcCcEEEEEEeCcceee
Q 012281 104 DLDEAKVKQFKDAIENNYWFEFFLDDLPLWG 134 (467)
Q Consensus 104 ~~~~~~~~~l~~~I~~~Y~~~~~iD~LP~~g 134 (467)
.+++++.+++.+.|++.=..+..|||+|+-|
T Consensus 27 ~L~~~~r~~~d~~i~~y~~~~~lVDGvPaQG 57 (85)
T PF07240_consen 27 PLTPQDRQRIDRFIRRYKEENNLVDGVPAQG 57 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccCcCCCC
Confidence 3899999999999997666666999999853
No 25
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=28.57 E-value=57 Score=31.92 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=25.8
Q ss_pred ccChhHHHHHHHHHHHhhhhhhhhhhhhhcccC
Q 012281 368 AIPFGTMVVVFVIWAFISFPLALLGTVVGRNWS 400 (467)
Q Consensus 368 aipf~ti~~ll~lw~~v~~PL~~lG~~~g~~~~ 400 (467)
+.--...+..+.++-.|-+||+++.|++|-+..
T Consensus 227 ~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~ 259 (292)
T PF01544_consen 227 SNRQNRVMKVLTIVTAIFLPLTFITGIFGMNFK 259 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 333566777888888888999999999999853
No 26
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=27.40 E-value=4.4e+02 Score=28.84 Aligned_cols=34 Identities=21% Similarity=0.505 Sum_probs=23.4
Q ss_pred CCCccccchhhhhccccchhhHhHHHHHHHHhhc
Q 012281 419 KKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFW 452 (467)
Q Consensus 419 qpwy~~~~~~~l~~GilPF~~i~iEl~fi~~S~W 452 (467)
|+|-.+.-...+++-.+|....|.=---++--+|
T Consensus 466 ~kY~k~~GvGTL~s~mLPYsi~f~i~w~~l~~iw 499 (516)
T COG2978 466 QKYDKDAGVGTLMSMMLPYSIAFLIAWTLLLLIW 499 (516)
T ss_pred HHhCcCccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4455556677788888898888766655555555
No 27
>PRK09546 zntB zinc transporter; Reviewed
Probab=26.72 E-value=64 Score=32.88 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 012281 372 GTMVVVFVIWAFISFPLALLGTVVGRNW 399 (467)
Q Consensus 372 ~ti~~ll~lw~~v~~PL~~lG~~~g~~~ 399 (467)
...+.++.++-.+.+|++++.|++|-+.
T Consensus 261 N~~m~~Ltilt~IflPlT~IaGiyGMNf 288 (324)
T PRK09546 261 NRRTYTMSLMAMVFLPTTFLTGLFGVNL 288 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3445566666677779999999999884
No 28
>PF14093 DUF4271: Domain of unknown function (DUF4271)
Probab=25.55 E-value=4.8e+02 Score=24.50 Aligned_cols=15 Identities=0% Similarity=-0.224 Sum_probs=8.4
Q ss_pred HHHhhhcccccccee
Q 012281 311 YALTSFISGYVSGGM 325 (467)
Q Consensus 311 y~~~~~iaGy~S~~~ 325 (467)
..+++.+.+|...+.
T Consensus 89 ~~i~~~~~~~~~~K~ 103 (208)
T PF14093_consen 89 GIIFLIVFLFFLLKF 103 (208)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334566666665554
No 29
>PF00528 BPD_transp_1: Binding-protein-dependent transport system inner membrane component; InterPro: IPR000515 Bacterial binding protein-dependent transport systems [, ] are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown [, ] that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems [] to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, however they can be classified into seven families which have been respectively termed: araH, cysTW, fecCD, hisMQ, livHM, malFG and oppBC.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2ONK_H 3PUX_G 3PUY_G 2R6G_G 3PV0_G 3RLF_G 3PUW_G 3PUV_G 3PUZ_G 3TUI_E ....
Probab=25.41 E-value=1.4e+02 Score=26.49 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=47.5
Q ss_pred ccccccceeeeecCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCCccChhHHHHHHHHHHHhhhhhhhhhhhhh
Q 012281 317 ISGYVSGGMYSRNGGKNWIKSMILTASLFPFMVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVG 396 (467)
Q Consensus 317 iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~ilN~i~~~~~Ss~aipf~ti~~ll~lw~~v~~PL~~lG~~~g 396 (467)
+-|+..| .++....+++.+........+|.++.++....=+ .-.... ......+++.....+.|.....-.-+
T Consensus 3 ~lg~~~a-~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~-----~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ 75 (185)
T PF00528_consen 3 PLGILLA-LRKNRKFKRILRPLINIPLSIPSIVIGILLILIF-----FFLNSF-GFGFLPIILAYVIFWFPFAIIIIYNA 75 (185)
T ss_dssp HHHHHHH-CSSTCTTHHHHHHHHHHHHHS-HHHHHHHHHHHH-----TTSCSC-TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhccc-ccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 5566677788888888888999988666554322 111222 23444466677778888888877777
Q ss_pred cc
Q 012281 397 RN 398 (467)
Q Consensus 397 ~~ 398 (467)
.+
T Consensus 76 ~~ 77 (185)
T PF00528_consen 76 LR 77 (185)
T ss_dssp HC
T ss_pred Hh
Confidence 76
No 30
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=25.24 E-value=4.3e+02 Score=27.02 Aligned_cols=122 Identities=15% Similarity=0.166 Sum_probs=70.9
Q ss_pred chhHHHHHHHHH---HHHHHHhccccCchhHHHHHHHHH--HHhhhccccccceeeeecCC---cchhhhhhhhhhhhhH
Q 012281 276 TGAQLALLVLLV---ILMAIVGTLYIGRGAIVTTFIVCY--ALTSFISGYVSGGMYSRNGG---KNWIKSMILTASLFPF 347 (467)
Q Consensus 276 ~G~Qll~~~~~~---l~~a~lg~~~~~rg~l~t~~i~~y--~~~~~iaGy~S~~~yk~~~g---~~W~~~~~lt~~l~P~ 347 (467)
+++|+...+... ++-+.+|+.-.+.|+..+..++-- ++....+||+|--..+.+.| ..-.--...-..++|+
T Consensus 118 tAi~~g~~~a~~w~Ll~Ng~vgfQl~eDGT~~Sl~ll~~ss~~~f~~t~~isl~Tf~~w~~~~~~~~~~~Lfvl~~l~p~ 197 (293)
T PF12271_consen 118 TAIQIGLISATCWCLLINGFVGFQLWEDGTPLSLWLLRGSSLILFIGTFYISLDTFKSWTGYLSPTNTIALFVLYYLLPA 197 (293)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchhHHHHHHHHH
Confidence 567777665544 333446665557777766544322 22335566666666665554 1111122444578899
Q ss_pred HHHHHHHHHHHHHHHhCCCCccChhHHHHHHHHHHHhhhhhhhhhhhhhc
Q 012281 348 MVFGIGFLLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGR 397 (467)
Q Consensus 348 ~~~~i~~ilN~i~~~~~Ss~aipf~ti~~ll~lw~~v~~PL~~lG~~~g~ 397 (467)
+.+.+++++..+....-=-.-=|.+.++.-.+++..-++=.-.++..+..
T Consensus 198 i~l~~Y~v~q~~lv~~vL~e~wp~g~i~~~~~fFv~gQv~~y~~S~~IC~ 247 (293)
T PF12271_consen 198 IFLVIYVVLQLILVLRVLGERWPLGYILLGVFFFVAGQVFLYVFSTHICE 247 (293)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHhhHHHhc
Confidence 99999998887765554455567777766665555555544444444433
No 31
>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death. The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.
Probab=24.78 E-value=40 Score=30.26 Aligned_cols=71 Identities=24% Similarity=0.323 Sum_probs=44.2
Q ss_pred EEeeecCCCCCCccccccc--C--CC--CCCCCCCccccCCc-cchhcCCCeeeCCcEEEecccccceeeeeeecCHHHH
Q 012281 38 WVNKVGPYNNPQETYNYYS--L--PF--CHASGNPAHKWGGL-GEVLGGNELIDSQIDIKFQRNVDKASICSLDLDEAKV 110 (467)
Q Consensus 38 ~vNki~s~~~~~~~y~Yy~--l--pf--C~p~~~~~~~~~sl-geiL~Gdr~~~s~y~l~f~~~~~c~~lC~~~~~~~~~ 110 (467)
+|-+|+| .-++.-|||-+ | +| +.. ...|+ -+...|++-..=|.+++|.....|.++. +++
T Consensus 33 ~V~~Ikp-G~~LFLfn~~~r~L~GifeA~S~------G~~ni~p~Af~~~~~s~fPaQVrf~i~~~C~PL~-----E~~- 99 (132)
T smart00767 33 FVRNIKP-GLPLFLYNYDTRKLHGIFEATSF------GGLNIDPNAFEGKKESRFPAQVRFRIRKDCKPLP-----ESE- 99 (132)
T ss_pred hhheeCC-CCEEEEEecCCceeeeEEEeccC------CcCCcChhHhcCCCCCccCcEEEEEEeeeecCCC-----HHH-
Confidence 4677887 66777788765 2 12 111 01122 1344455423336789999999998865 333
Q ss_pred HHHHHHHHcCcEE
Q 012281 111 KQFKDAIENNYWF 123 (467)
Q Consensus 111 ~~l~~~I~~~Y~~ 123 (467)
++.+|++||..
T Consensus 100 --f~~aI~~nY~~ 110 (132)
T smart00767 100 --FRSAILENYDG 110 (132)
T ss_pred --HHHHHHHhCcC
Confidence 89999999965
No 32
>TIGR00895 2A0115 benzoate transport.
Probab=24.60 E-value=1.2e+02 Score=30.29 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=12.3
Q ss_pred HHHHHHhhhccccccceeeeecCC
Q 012281 308 IVCYALTSFISGYVSGGMYSRNGG 331 (467)
Q Consensus 308 i~~y~~~~~iaGy~S~~~yk~~~g 331 (467)
...+.+++.+++..++++-+.++.
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~ 314 (398)
T TIGR00895 291 GALFNFGGVIGSIIFGWLADRLGP 314 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcch
Confidence 334444555555555555555543
No 33
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=24.31 E-value=1e+02 Score=30.28 Aligned_cols=20 Identities=15% Similarity=0.394 Sum_probs=10.5
Q ss_pred HHHHHhhhccccccceeeee
Q 012281 309 VCYALTSFISGYVSGGMYSR 328 (467)
Q Consensus 309 ~~y~~~~~iaGy~S~~~yk~ 328 (467)
..+.+.+.++...++++-++
T Consensus 259 ~~~~~~~~~~~~~~g~l~~r 278 (379)
T TIGR00881 259 TLYELGGLVGTLLAGWLSDK 278 (379)
T ss_pred HHHHHHcchhHHHHHHHHHH
Confidence 33445555555555555543
No 34
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=20.94 E-value=3.1e+02 Score=25.75 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=17.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc
Q 012281 377 VFVIWAFISFPLALLGTVVGRNW 399 (467)
Q Consensus 377 ll~lw~~v~~PL~~lG~~~g~~~ 399 (467)
.+.+.+.+.+-..++|+++|+|.
T Consensus 157 ~~~~~~~~~~v~a~lG~~lG~kl 179 (186)
T PF09605_consen 157 MLIIIIIITFVGALLGALLGKKL 179 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777899999999874
No 35
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=20.02 E-value=1.9e+02 Score=25.77 Aligned_cols=74 Identities=27% Similarity=0.480 Sum_probs=52.8
Q ss_pred eecchhHHHHHHHHHHHHHH-HhccccCchhHHHHHHHHHHHhhhcc---ccccceeeeecCCcchhhhhhhhhhhhhHH
Q 012281 273 VVGTGAQLALLVLLVILMAI-VGTLYIGRGAIVTTFIVCYALTSFIS---GYVSGGMYSRNGGKNWIKSMILTASLFPFM 348 (467)
Q Consensus 273 lvG~G~Qll~~~~~~l~~a~-lg~~~~~rg~l~t~~i~~y~~~~~ia---Gy~S~~~yk~~~g~~W~~~~~lt~~l~P~~ 348 (467)
.-++|+--.+-++..+--|. +||++.-.|-+++.++-+|+--+.++ |+.|= ++|+|. .+ +.+=|.+
T Consensus 18 VsamgCA~CFPAlASLGAAIGLGFLsq~EGLFi~~LlPlFA~iALlanalgW~sH--------RQW~Rs-~l-G~iGP~l 87 (139)
T PRK13755 18 VSAMGCAACFPALASLGAAIGLGFLSQYEGLFISTLLPLFAAIALLANALGWFSH--------RQWLRS-AL-GMIGPAL 87 (139)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-hh-cchhHHH
Confidence 33467777777777777776 99999988999999998887655554 45443 569985 44 5667887
Q ss_pred HHHHHHHH
Q 012281 349 VFGIGFLL 356 (467)
Q Consensus 349 ~~~i~~il 356 (467)
++...+.+
T Consensus 88 vl~~~~~~ 95 (139)
T PRK13755 88 VLAAVFLL 95 (139)
T ss_pred HHHHHHHH
Confidence 77665543
Done!