Query 012281
Match_columns 467
No_of_seqs 125 out of 661
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:20:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 52.3 15 0.00051 28.8 4.1 38 200-237 9-51 (79)
2 4f4l_A ION transport protein; 28.5 81 0.0028 25.8 5.2 80 273-359 3-89 (112)
3 4ev6_A Magnesium transport pro 21.5 59 0.002 31.8 3.5 29 371-399 275-303 (339)
4 3tlw_A GLR4197 protein, GLIC; 20.4 2.5E+02 0.0085 26.9 7.8 48 277-325 202-250 (321)
5 3o7q_A L-fucose-proton symport 19.6 43 0.0015 32.5 2.1 23 259-281 253-276 (438)
6 2iub_A CORA, divalent cation t 14.8 46 0.0016 33.0 0.9 30 370-399 298-327 (363)
7 1pw4_A Glycerol-3-phosphate tr 14.6 94 0.0032 30.1 3.1 23 307-329 293-315 (451)
8 1vq8_Q 50S ribosomal protein L 11.4 1E+02 0.0034 25.1 1.8 27 27-56 32-58 (96)
9 3d85_C IL-23 subunit, interleu 11.4 45 0.0016 28.9 -0.3 40 405-444 121-160 (178)
10 3j21_R 50S ribosomal protein L 10.7 1.1E+02 0.0038 24.9 1.8 27 27-56 33-59 (97)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=52.34 E-value=15 Score=28.84 Aligned_cols=38 Identities=29% Similarity=0.585 Sum_probs=23.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHH-----hhhHhhhhccc
Q 012281 200 HWFSIFNSFMMVIFLTGLVSMILMRTL-----RNDYAKYARED 237 (467)
Q Consensus 200 hw~Si~NS~~ivl~L~~~v~~Il~r~l-----r~D~~~y~~~~ 237 (467)
+...|+-..+..++|.|++.++++|.+ ||+++|++++.
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~ 51 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEER 51 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555677777777776654 67777776443
No 2
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=28.47 E-value=81 Score=25.82 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=41.9
Q ss_pred eecchhHHHHHHHHHHHHHHHhccc-----c-CchhHHHHHHHHHHHhhhccccccceeeee-cCCcchhhhhhhhhhhh
Q 012281 273 VVGTGAQLALLVLLVILMAIVGTLY-----I-GRGAIVTTFIVCYALTSFISGYVSGGMYSR-NGGKNWIKSMILTASLF 345 (467)
Q Consensus 273 lvG~G~Qll~~~~~~l~~a~lg~~~-----~-~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~-~~g~~W~~~~~lt~~l~ 345 (467)
+.|.|-=.+++.++..++|++|..- | +-+++.++++.+|.++. ..|+... ++.. .....|.. ...+
T Consensus 3 ~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~T-~e~W~~~-~~~~~~~~~~~a~-----iyFi 75 (112)
T 4f4l_A 3 HMGVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMT-LESWSMG-IVRPVMNVHPNAW-----VFFI 75 (112)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHT-TTTCCCC-CHHHHTTTSTTTH-----HHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHCCCccccccCHHHHHHHHHHHHH-ccccHHH-HHHHHHhcCcHHH-----HHHH
Confidence 4566666667777777788777643 4 55788888888887654 3444222 2222 22222221 1233
Q ss_pred hHHHHHHHHHHHHH
Q 012281 346 PFMVFGIGFLLNTI 359 (467)
Q Consensus 346 P~~~~~i~~ilN~i 359 (467)
..++++.++++|++
T Consensus 76 ~fi~i~~fi~lNLf 89 (112)
T 4f4l_A 76 PFIMLTTFTVLNLF 89 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555666665
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=21.46 E-value=59 Score=31.81 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 012281 371 FGTMVVVFVIWAFISFPLALLGTVVGRNW 399 (467)
Q Consensus 371 f~ti~~ll~lw~~v~~PL~~lG~~~g~~~ 399 (467)
-..++..+..|-.|-+|++++.|++|-+.
T Consensus 275 ~N~~mk~LTiit~IflP~T~IaGiyGMNf 303 (339)
T 4ev6_A 275 MNQIMKILTMVTTIFAVPMWITGIYGMNF 303 (339)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 35677889999999999999999999885
No 4
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=20.38 E-value=2.5e+02 Score=26.87 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHhcccc-CchhHHHHHHHHHHHhhhcccccccee
Q 012281 277 GAQLALLVLLVILMAIVGTLYI-GRGAIVTTFIVCYALTSFISGYVSGGM 325 (467)
Q Consensus 277 G~Qll~~~~~~l~~a~lg~~~~-~rg~l~t~~i~~y~~~~~iaGy~S~~~ 325 (467)
-+|+++-.+++++++.+++. | ..|.-++..+........+...++..+
T Consensus 202 ~~~~~iP~~li~~ls~~sF~-p~~~~~Rv~l~it~lL~~t~~~~~~~~~l 250 (321)
T 3tlw_A 202 IPNIILPMLFILFISWTAFW-STSYEANVTLVVSTLIAHIAFNILVETCL 250 (321)
T ss_dssp HHHTHHHHHHHHHHHGGGGG-CCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ehhHHHHHHHHHHHhheeec-cCCCCCcEEEEhhHHHHHHHHHHHHHhhC
Confidence 46888888888899999999 8 666666655555544444444444444
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=19.63 E-value=43 Score=32.50 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=10.8
Q ss_pred cccCCCCCc-cceeeeecchhHHH
Q 012281 259 DVFRPPRNL-VVLSAVVGTGAQLA 281 (467)
Q Consensus 259 DVFR~P~~~-~lls~lvG~G~Qll 281 (467)
+++|.|... .+++.++..+.+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~ 276 (438)
T 3o7q_A 253 RLARIRHWRWAVLAQFCYVGAQTA 276 (438)
T ss_dssp HHTTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHH
Confidence 677777632 22333334444433
No 6
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=14.75 E-value=46 Score=33.01 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=24.0
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 012281 370 PFGTMVVVFVIWAFISFPLALLGTVVGRNW 399 (467)
Q Consensus 370 pf~ti~~ll~lw~~v~~PL~~lG~~~g~~~ 399 (467)
---.++..+..|-.|-+|++++.|++|-+.
T Consensus 298 ~~N~imk~LTiit~IflP~T~IaGiyGMNf 327 (363)
T 2iub_A 298 KTNEVMKVLTIIATIFMPLTFIAGIYGMNF 327 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 345678899999999999999999999874
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=14.61 E-value=94 Score=30.08 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=13.0
Q ss_pred HHHHHHHhhhccccccceeeeec
Q 012281 307 FIVCYALTSFISGYVSGGMYSRN 329 (467)
Q Consensus 307 ~i~~y~~~~~iaGy~S~~~yk~~ 329 (467)
....+.+++.+++..++++.+.+
T Consensus 293 ~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 293 AYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666554
No 8
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=11.42 E-value=1e+02 Score=25.07 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=19.7
Q ss_pred CCCCCCCcEEEEEeeecCCCCCCccccccc
Q 012281 27 HKYQQDEPVTLWVNKVGPYNNPQETYNYYS 56 (467)
Q Consensus 27 ~~Y~~Gd~V~v~vNki~s~~~~~~~y~Yy~ 56 (467)
..|+.||.|.+.+|---. .-.|+.+|+
T Consensus 32 ~~yk~Gd~VdIk~~~svq---KGmPhk~yH 58 (96)
T 1vq8_Q 32 EEFDDGEKVHLKIDPSVP---NGRFHPRFD 58 (96)
T ss_dssp CCCCTTCEEEECCCTTCC---SSCCCGGGT
T ss_pred HHcCCCCEEEEEecCCcc---CCCCcccCC
Confidence 679999999997764332 347777774
No 9
>3d85_C IL-23 subunit, interleukin-23 subunit P19; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} PDB: 3d87_A* 3qwr_B* 3duh_C*
Probab=11.40 E-value=45 Score=28.89 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=17.4
Q ss_pred CCcccCCCCCCCCCCCCccccchhhhhccccchhhHhHHH
Q 012281 405 NPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEM 444 (467)
Q Consensus 405 ~P~~~n~ipR~IP~qpwy~~~~~~~l~~GilPF~~i~iEl 444 (467)
..-.+.|+||..|.|||-.-..-.-++-.+--|.+|..-+
T Consensus 121 hhwet~q~Ps~~psq~wqr~llr~kilrslqafvavaarv 160 (178)
T 3d85_C 121 HHWETQQIPSLSPSQPWQRLLLRFKILRSLQAFVAVAARV 160 (178)
T ss_dssp ----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999974333223344445565555443
No 10
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=10.67 E-value=1.1e+02 Score=24.87 Aligned_cols=27 Identities=4% Similarity=0.143 Sum_probs=19.5
Q ss_pred CCCCCCCcEEEEEeeecCCCCCCccccccc
Q 012281 27 HKYQQDEPVTLWVNKVGPYNNPQETYNYYS 56 (467)
Q Consensus 27 ~~Y~~Gd~V~v~vNki~s~~~~~~~y~Yy~ 56 (467)
..|+.||.|.+.+|- + ...-.|+.+|+
T Consensus 33 ~~yk~Gd~VdIk~~g--s-vqKGmPhk~yH 59 (97)
T 3j21_R 33 QEFEVGQRVHIVIEP--S-YHKGMPDPRFH 59 (97)
T ss_dssp CCCCTTCEEEECCCT--T-CCSSCCCGGGT
T ss_pred HHhcCCCEEEEEecC--c-eEcCCCCcccC
Confidence 689999999997764 2 22357777773
Done!