Query 012281
Match_columns 467
No_of_seqs 125 out of 661
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 06:20:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012281.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012281hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 22.4 18 0.0013 32.6 2.4 22 311-332 294-315 (447)
2 d1vqoq1 b.34.5.1 (Q:1-95) Ribo 17.2 26 0.0019 26.6 1.8 27 27-56 31-57 (95)
3 d2iuba2 f.17.3.1 (A:286-349) M 12.4 51 0.0037 22.4 2.2 26 374-399 5-30 (64)
4 d1ijwc_ a.4.1.2 (C:) HIN recom 10.0 79 0.0057 20.4 2.3 19 103-121 4-22 (47)
5 d1gy7a_ d.17.4.2 (A:) Nuclear 9.3 31 0.0023 26.6 -0.0 13 249-262 105-117 (121)
6 d1r7ma2 d.95.2.1 (A:121-225) D 9.2 62 0.0045 24.4 1.8 31 97-127 39-69 (105)
7 d2brfa1 b.26.1.2 (A:8-108) Pol 9.1 67 0.0049 23.9 1.9 19 178-196 78-101 (101)
8 d1pv7a_ f.38.1.2 (A:) Lactose 8.4 20 0.0014 31.3 -1.9 27 305-331 262-288 (417)
9 d1oedb_ f.36.1.1 (B:) Acetylch 8.0 1.1E+02 0.0081 25.7 3.3 49 278-326 6-55 (250)
10 d3cnxa1 d.17.4.17 (A:5-157) Un 7.9 59 0.0043 25.4 1.2 10 249-258 137-146 (153)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=22.41 E-value=18 Score=32.57 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=9.5
Q ss_pred HHHhhhccccccceeeeecCCc
Q 012281 311 YALTSFISGYVSGGMYSRNGGK 332 (467)
Q Consensus 311 y~~~~~iaGy~S~~~yk~~~g~ 332 (467)
+.+++.++...++++.+.++.+
T Consensus 294 ~~~~~~~~~~~~g~~~~~~~~~ 315 (447)
T d1pw4a_ 294 YEYAGIPGTLLCGWMSDKVFRG 315 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTT
T ss_pred chhhhhhhhhhhhhhhhhcccc
Confidence 3344444444444444444433
No 2
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=17.17 E-value=26 Score=26.55 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=20.2
Q ss_pred CCCCCCCcEEEEEeeecCCCCCCccccccc
Q 012281 27 HKYQQDEPVTLWVNKVGPYNNPQETYNYYS 56 (467)
Q Consensus 27 ~~Y~~Gd~V~v~vNki~s~~~~~~~y~Yy~ 56 (467)
+.|++||.|.+.+|--- ..-+|+.+|+
T Consensus 31 ~~y~~GD~V~I~idpsv---~kGmPh~~yh 57 (95)
T d1vqoq1 31 EEFDDGEKVHLKIDPSV---PNGRFHPRFD 57 (95)
T ss_dssp CCCCTTCEEEECCCTTC---CSSCCCGGGT
T ss_pred eeccCCCEEEEEecCCe---ecCccceeec
Confidence 78999999999877522 2367887773
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=12.38 E-value=51 Score=22.43 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhccc
Q 012281 374 MVVVFVIWAFISFPLALLGTVVGRNW 399 (467)
Q Consensus 374 i~~ll~lw~~v~~PL~~lG~~~g~~~ 399 (467)
.+..+..+-.+-+|++++.|++|-+.
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 45567788889999999999999874
No 4
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=9.96 E-value=79 Score=20.38 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=16.5
Q ss_pred eecCHHHHHHHHHHHHcCc
Q 012281 103 LDLDEAKVKQFKDAIENNY 121 (467)
Q Consensus 103 ~~~~~~~~~~l~~~I~~~Y 121 (467)
+++|++|++.++++++++.
T Consensus 4 ~~lt~~q~~~a~~l~~~G~ 22 (47)
T d1ijwc_ 4 RAINKHEQEQISRLLEKGH 22 (47)
T ss_dssp CSSCHHHHHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHHHHHCCC
Confidence 5789999999999998764
No 5
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.31 E-value=31 Score=26.61 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=10.5
Q ss_pred ccCCCeEEeccccC
Q 012281 249 EESGWKLVHGDVFR 262 (467)
Q Consensus 249 ee~GWKlvhgDVFR 262 (467)
++.||+ |+.|+||
T Consensus 105 ~~~~y~-I~nD~FR 117 (121)
T d1gy7a_ 105 DGNSYY-VFNDIFR 117 (121)
T ss_dssp ETTEEE-EEEEEEE
T ss_pred eCCEEE-EEEEEEE
Confidence 456898 8999998
No 6
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.21 E-value=62 Score=24.35 Aligned_cols=31 Identities=6% Similarity=0.243 Sum_probs=25.7
Q ss_pred ceeeeeeecCHHHHHHHHHHHHcCcEEEEEE
Q 012281 97 KASICSLDLDEAKVKQFKDAIENNYWFEFFL 127 (467)
Q Consensus 97 c~~lC~~~~~~~~~~~l~~~I~~~Y~~~~~i 127 (467)
...+|+..+|++|++.+.+++.+.|..+-.+
T Consensus 39 ~i~l~T~~Ft~~e~~~L~~~L~~kf~l~~~i 69 (105)
T d1r7ma2 39 SIVLNTQSFTFEEVEYLVKGLRNKFQLNCYV 69 (105)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCceEEE
Confidence 5578988999999999999999988655443
No 7
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.06 E-value=67 Score=23.90 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=12.6
Q ss_pred CcccCCceEE-----EEEEEEEee
Q 012281 178 KPLEVGRTLD-----MTYSVKWTP 196 (467)
Q Consensus 178 ~~i~~~~~i~-----fTYSV~w~~ 196 (467)
..+.+++.|. |.|.|+|+|
T Consensus 78 ~~L~~GD~i~l~~~~~~y~v~fee 101 (101)
T d2brfa1 78 GSLGVGDTLYLVNGLHPLTLRWEE 101 (101)
T ss_dssp EEEETTCEEEEETTEEEEEEEEEC
T ss_pred eECCCCCEEEEcCCeEEEEEEEEC
Confidence 3455666544 489999975
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=8.45 E-value=20 Score=31.31 Aligned_cols=27 Identities=15% Similarity=0.050 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhccccccceeeeecCC
Q 012281 305 TTFIVCYALTSFISGYVSGGMYSRNGG 331 (467)
Q Consensus 305 t~~i~~y~~~~~iaGy~S~~~yk~~~g 331 (467)
........+.+.+++..++++-++.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~ 288 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPLIINRIGG 288 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHCH
T ss_pred cccccccccccccchhhhhhhhccccc
Confidence 334444555666666777766655443
No 9
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.02 E-value=1.1e+02 Score=25.66 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHhcccc-CchhHHHHHHHHHHHhhhccccccceee
Q 012281 278 AQLALLVLLVILMAIVGTLYI-GRGAIVTTFIVCYALTSFISGYVSGGMY 326 (467)
Q Consensus 278 ~Qll~~~~~~l~~a~lg~~~~-~rg~l~t~~i~~y~~~~~iaGy~S~~~y 326 (467)
+++++=.+++.+++.+||+-| ++|.=++..+-.......+...++..+=
T Consensus 6 ~~~~~P~~~i~~l~~~~f~~p~~~~er~~l~it~lL~~~~~~~~v~~~~P 55 (250)
T d1oedb_ 6 VYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVP 55 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHHHHheecCCCCCcEEeeHHHHHHHHHHHHHHHHhCC
Confidence 466777777788889999988 7787777766666666666666655443
No 10
>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]}
Probab=7.90 E-value=59 Score=25.41 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=7.3
Q ss_pred ccCCCeEEec
Q 012281 249 EESGWKLVHG 258 (467)
Q Consensus 249 ee~GWKlvhg 258 (467)
++.|||++|-
T Consensus 137 ~dg~Wkivh~ 146 (153)
T d3cnxa1 137 TPDGWKLWSH 146 (153)
T ss_dssp CTTCCEEEEE
T ss_pred ECCEEEEEEE
Confidence 4568998874
Done!