Query 012283
Match_columns 467
No_of_seqs 256 out of 1198
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 01:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10422 lipopolysaccharide co 100.0 1.3E-52 2.9E-57 428.1 34.2 321 120-464 3-346 (352)
2 TIGR02201 heptsyl_trn_III lipo 100.0 1.5E-52 3.2E-57 426.3 32.3 314 124-461 1-343 (344)
3 PRK10916 ADP-heptose:LPS hepto 100.0 2.2E-51 4.7E-56 418.5 33.8 316 123-463 1-345 (348)
4 TIGR02195 heptsyl_trn_II lipop 100.0 7.9E-51 1.7E-55 411.9 32.8 310 124-461 1-333 (334)
5 PRK10964 ADP-heptose:LPS hepto 100.0 4.5E-50 9.8E-55 404.6 31.1 309 123-462 1-321 (322)
6 TIGR02193 heptsyl_trn_I lipopo 100.0 1.8E-48 3.9E-53 392.1 29.1 308 124-461 1-319 (319)
7 COG0859 RfaF ADP-heptose:LPS h 100.0 2.7E-46 5.8E-51 378.8 30.5 312 122-463 1-332 (334)
8 cd03789 GT1_LPS_heptosyltransf 100.0 2.7E-42 6E-47 340.9 28.4 257 124-458 1-278 (279)
9 PF01075 Glyco_transf_9: Glyco 100.0 7E-31 1.5E-35 254.6 16.0 231 191-450 1-239 (247)
10 TIGR03568 NeuC_NnaA UDP-N-acet 99.0 4.3E-08 9.3E-13 100.9 22.2 299 123-462 1-338 (365)
11 PRK10017 colanic acid biosynth 98.8 3.1E-07 6.6E-12 96.1 20.6 314 123-463 1-392 (426)
12 PF04007 DUF354: Protein of un 98.3 0.00018 4E-09 72.9 22.0 264 123-420 1-277 (335)
13 PRK00025 lpxB lipid-A-disaccha 98.2 1.3E-05 2.7E-10 82.4 13.2 271 122-420 1-290 (380)
14 TIGR03590 PseG pseudaminic aci 98.0 0.0016 3.4E-08 64.6 22.3 244 132-420 13-270 (279)
15 PF13528 Glyco_trans_1_3: Glyc 97.6 0.01 2.2E-07 59.3 20.8 285 123-460 1-317 (318)
16 TIGR03609 S_layer_CsaB polysac 97.6 0.0048 1E-07 61.5 17.9 78 339-416 191-275 (298)
17 TIGR00236 wecB UDP-N-acetylglu 97.5 0.025 5.4E-07 57.8 23.1 72 380-463 263-334 (365)
18 PRK05749 3-deoxy-D-manno-octul 97.5 0.013 2.8E-07 61.4 21.2 98 123-229 50-152 (425)
19 cd03786 GT1_UDP-GlcNAc_2-Epime 97.4 0.01 2.2E-07 60.3 18.8 300 129-463 5-337 (363)
20 COG3980 spsG Spore coat polysa 97.4 0.0084 1.8E-07 58.5 16.2 243 123-417 1-253 (318)
21 TIGR03492 conserved hypothetic 97.4 0.016 3.6E-07 60.3 19.6 303 129-463 3-364 (396)
22 cd03807 GT1_WbnK_like This fam 97.3 0.064 1.4E-06 52.9 21.7 273 124-415 1-297 (365)
23 COG0707 MurG UDP-N-acetylgluco 97.2 0.078 1.7E-06 54.4 21.9 305 123-463 1-324 (357)
24 cd03785 GT1_MurG MurG is an N- 97.2 0.096 2.1E-06 52.8 22.5 101 124-228 1-116 (350)
25 PRK12446 undecaprenyldiphospho 97.2 0.053 1.1E-06 55.6 20.1 295 123-462 2-324 (352)
26 TIGR01133 murG undecaprenyldip 97.1 0.081 1.8E-06 53.2 21.1 101 123-227 1-116 (348)
27 PRK00726 murG undecaprenyldiph 97.0 0.061 1.3E-06 54.7 19.3 103 122-228 1-118 (357)
28 COG1817 Uncharacterized protei 97.0 0.084 1.8E-06 52.4 18.1 247 138-419 15-280 (346)
29 PF02684 LpxB: Lipid-A-disacch 96.9 0.023 5.1E-07 58.5 14.5 301 125-463 1-340 (373)
30 cd03808 GT1_cap1E_like This fa 96.8 0.45 9.7E-06 46.6 23.2 84 124-210 1-88 (359)
31 TIGR00661 MJ1255 conserved hyp 96.8 0.075 1.6E-06 53.5 17.6 100 124-228 1-117 (321)
32 PRK13609 diacylglycerol glucos 96.8 0.1 2.2E-06 53.7 18.7 75 341-416 218-299 (380)
33 COG1519 KdtA 3-deoxy-D-manno-o 96.7 0.35 7.7E-06 50.0 21.5 266 124-420 50-350 (419)
34 PRK01021 lpxB lipid-A-disaccha 96.7 0.021 4.6E-07 61.8 12.8 261 124-420 228-517 (608)
35 PRK13608 diacylglycerol glucos 96.7 0.053 1.2E-06 56.2 15.5 35 382-417 264-300 (391)
36 cd04951 GT1_WbdM_like This fam 96.6 0.38 8.2E-06 48.0 20.6 102 303-416 180-292 (360)
37 TIGR03088 stp2 sugar transfera 96.5 0.29 6.3E-06 49.8 19.8 103 123-229 2-108 (374)
38 PF04230 PS_pyruv_trans: Polys 96.5 0.32 6.9E-06 46.5 18.9 83 336-418 190-284 (286)
39 cd03784 GT1_Gtf_like This fami 96.4 0.47 1E-05 48.9 20.8 46 123-170 1-46 (401)
40 cd03811 GT1_WabH_like This fam 96.3 0.79 1.7E-05 44.6 20.7 79 338-416 204-293 (353)
41 COG2327 WcaK Polysaccharide py 96.3 0.64 1.4E-05 47.9 20.0 276 123-420 1-314 (385)
42 TIGR00215 lpxB lipid-A-disacch 96.3 0.069 1.5E-06 55.4 13.5 311 119-464 2-348 (385)
43 cd03819 GT1_WavL_like This fam 96.2 1.1 2.5E-05 44.5 21.9 79 338-416 200-294 (355)
44 cd04962 GT1_like_5 This family 96.1 1.6 3.5E-05 43.9 22.1 79 338-416 212-300 (371)
45 COG0763 LpxB Lipid A disacchar 95.9 0.16 3.4E-06 52.0 13.5 308 122-463 1-344 (381)
46 cd03820 GT1_amsD_like This fam 95.6 2.5 5.4E-05 41.0 21.2 116 338-463 193-319 (348)
47 cd03823 GT1_ExpE7_like This fa 95.5 2.8 6E-05 41.2 21.4 78 338-415 206-292 (359)
48 cd03801 GT1_YqgM_like This fam 95.4 1.7 3.7E-05 42.4 19.0 115 338-463 214-341 (374)
49 PRK14089 ipid-A-disaccharide s 95.4 0.47 1E-05 48.6 15.0 98 310-420 167-264 (347)
50 cd03817 GT1_UGDG_like This fam 95.2 3.2 6.9E-05 40.9 20.2 80 338-417 217-309 (374)
51 cd03812 GT1_CapH_like This fam 95.1 4.1 8.9E-05 40.5 21.4 116 338-465 207-333 (358)
52 PLN02871 UDP-sulfoquinovose:DA 95.1 3.1 6.7E-05 44.1 20.6 101 353-463 292-400 (465)
53 cd03799 GT1_amsK_like This is 94.5 4.2 9E-05 40.3 19.1 115 338-463 194-327 (355)
54 PLN02605 monogalactosyldiacylg 93.8 3 6.5E-05 43.0 16.5 35 383-417 274-309 (382)
55 cd03798 GT1_wlbH_like This fam 93.3 8.8 0.00019 37.5 21.5 79 338-416 217-308 (377)
56 cd03802 GT1_AviGT4_like This f 93.2 8 0.00017 38.0 18.2 79 342-420 187-278 (335)
57 cd03794 GT1_wbuB_like This fam 92.9 10 0.00022 37.3 22.5 115 337-462 234-364 (394)
58 PF02350 Epimerase_2: UDP-N-ac 92.9 0.24 5.3E-06 50.6 6.8 114 338-463 199-318 (346)
59 cd04955 GT1_like_6 This family 92.3 13 0.00028 36.9 24.9 79 338-416 208-298 (363)
60 PRK09922 UDP-D-galactose:(gluc 91.6 13 0.00029 37.6 17.7 114 341-464 197-325 (359)
61 TIGR01426 MGT glycosyltransfer 88.9 2.4 5.1E-05 43.7 9.6 304 130-464 3-360 (392)
62 cd03795 GT1_like_4 This family 88.3 28 0.0006 34.3 21.1 115 338-463 206-332 (357)
63 COG0381 WecB UDP-N-acetylgluco 87.9 36 0.00078 35.2 23.5 43 379-421 269-311 (383)
64 cd03816 GT1_ALG1_like This fam 87.6 38 0.00083 35.2 22.1 113 338-463 247-381 (415)
65 PF13477 Glyco_trans_4_2: Glyc 87.1 10 0.00022 32.4 11.2 81 124-210 1-82 (139)
66 PF04413 Glycos_transf_N: 3-De 87.0 3.1 6.7E-05 38.6 8.1 90 124-222 22-114 (186)
67 COG3660 Predicted nucleoside-d 85.5 39 0.00085 33.2 18.4 102 310-421 161-276 (329)
68 PF14595 Thioredoxin_9: Thiore 84.0 1.6 3.5E-05 38.0 4.4 61 122-182 42-107 (129)
69 PF04464 Glyphos_transf: CDP-G 82.3 16 0.00034 37.3 11.7 269 114-416 5-294 (369)
70 PF05159 Capsule_synth: Capsul 80.3 6.2 0.00013 38.5 7.6 81 338-420 139-227 (269)
71 TIGR02149 glgA_Coryne glycogen 77.2 33 0.00073 34.6 12.2 79 338-416 216-310 (388)
72 cd03822 GT1_ecORF704_like This 76.6 79 0.0017 30.9 23.5 78 338-415 200-298 (366)
73 PRK15484 lipopolysaccharide 1, 75.7 50 0.0011 33.9 13.0 73 380-462 265-343 (380)
74 COG3613 Nucleoside 2-deoxyribo 75.4 15 0.00033 33.5 7.8 35 386-420 63-108 (172)
75 TIGR02095 glgA glycogen/starch 75.0 48 0.001 35.1 13.1 78 338-415 306-394 (473)
76 cd05844 GT1_like_7 Glycosyltra 74.7 17 0.00036 36.4 9.1 115 338-463 203-336 (367)
77 TIGR03449 mycothiol_MshA UDP-N 74.6 46 0.001 34.0 12.5 80 338-417 234-333 (405)
78 PRK10307 putative glycosyl tra 74.2 53 0.0011 33.8 12.9 80 338-417 244-338 (412)
79 cd03814 GT1_like_2 This family 73.5 34 0.00074 33.5 10.9 79 338-419 212-299 (364)
80 PF00534 Glycos_transf_1: Glyc 73.1 60 0.0013 28.5 11.4 116 337-463 29-158 (172)
81 PF02441 Flavoprotein: Flavopr 72.4 5.4 0.00012 34.5 4.1 53 123-178 1-54 (129)
82 cd03800 GT1_Sucrose_synthase T 72.1 37 0.00081 34.1 11.0 79 338-416 235-332 (398)
83 cd01635 Glycosyltransferase_GT 71.9 23 0.0005 32.0 8.6 83 338-420 119-215 (229)
84 PRK15427 colanic acid biosynth 71.7 22 0.00048 37.0 9.3 114 338-462 237-369 (406)
85 PRK15179 Vi polysaccharide bio 71.0 1.9E+02 0.004 32.7 17.7 80 338-417 532-622 (694)
86 cd03796 GT1_PIG-A_like This fa 70.0 50 0.0011 33.9 11.5 79 338-416 208-299 (398)
87 PF13692 Glyco_trans_1_4: Glyc 68.8 11 0.00025 31.8 5.4 108 338-462 17-134 (135)
88 cd03825 GT1_wcfI_like This fam 67.8 59 0.0013 32.1 11.2 76 338-417 208-295 (365)
89 cd03792 GT1_Trehalose_phosphor 65.9 84 0.0018 31.8 12.1 36 381-416 263-303 (372)
90 cd03821 GT1_Bme6_like This fam 65.8 79 0.0017 30.7 11.6 79 338-416 218-311 (375)
91 cd03804 GT1_wbaZ_like This fam 65.3 49 0.0011 33.0 10.1 111 341-464 210-327 (351)
92 cd01980 Chlide_reductase_Y Chl 64.5 81 0.0018 33.0 11.8 74 344-419 295-377 (416)
93 PF01531 Glyco_transf_11: Glyc 63.6 70 0.0015 31.9 10.6 96 310-417 163-274 (298)
94 PRK00654 glgA glycogen synthas 60.1 1.4E+02 0.003 31.6 12.8 79 338-416 297-386 (466)
95 cd03791 GT1_Glycogen_synthase_ 60.0 1.3E+02 0.0027 31.7 12.5 79 338-416 311-400 (476)
96 PF00113 Enolase_C: Enolase, C 58.1 58 0.0013 32.6 8.8 83 336-420 161-263 (295)
97 cd07062 Peptidase_S66_mccF_lik 57.1 74 0.0016 31.9 9.5 85 336-420 15-124 (308)
98 PRK14098 glycogen synthase; Pr 56.7 1.8E+02 0.004 31.1 13.1 79 338-416 322-411 (489)
99 TIGR00550 nadA quinolinate syn 56.5 88 0.0019 31.5 9.9 118 340-459 63-192 (310)
100 PRK06029 3-octaprenyl-4-hydrox 56.3 19 0.00041 33.5 4.7 46 122-169 1-46 (185)
101 TIGR02700 flavo_MJ0208 archaeo 56.0 21 0.00046 34.3 5.2 47 124-170 1-47 (234)
102 COG4261 Predicted acyltransfer 55.1 8.3 0.00018 37.2 2.1 23 399-421 222-244 (309)
103 PLN02316 synthase/transferase 54.6 50 0.0011 38.8 8.7 44 116-163 581-632 (1036)
104 PF06258 Mito_fiss_Elm1: Mitoc 52.8 2.6E+02 0.0056 28.2 15.8 121 290-420 125-259 (311)
105 PRK06849 hypothetical protein; 52.7 59 0.0013 33.5 8.3 82 121-211 3-85 (389)
106 TIGR02918 accessory Sec system 52.6 3.3E+02 0.0071 29.3 17.7 78 339-417 335-423 (500)
107 PF04101 Glyco_tran_28_C: Glyc 50.5 20 0.00044 31.9 3.9 35 382-416 63-98 (167)
108 cd01974 Nitrogenase_MoFe_beta 50.3 85 0.0018 33.1 9.1 80 340-420 314-405 (435)
109 COG1819 Glycosyl transferases, 49.8 18 0.0004 37.8 4.0 48 122-171 1-48 (406)
110 PLN02275 transferase, transfer 49.2 42 0.00091 34.3 6.5 64 354-417 264-340 (371)
111 TIGR02931 anfK_nitrog Fe-only 49.2 1.1E+02 0.0025 32.5 9.9 81 339-420 322-416 (461)
112 PF04007 DUF354: Protein of un 48.3 94 0.002 31.7 8.6 81 338-420 13-113 (335)
113 COG1105 FruK Fructose-1-phosph 47.8 1.2E+02 0.0026 30.6 9.1 85 289-391 110-195 (310)
114 cd03805 GT1_ALG2_like This fam 47.7 56 0.0012 33.0 7.1 114 338-463 226-364 (392)
115 cd03809 GT1_mtfB_like This fam 47.2 93 0.002 30.4 8.5 113 338-463 210-336 (365)
116 PF03033 Glyco_transf_28: Glyc 47.0 42 0.00092 28.5 5.3 54 125-182 1-54 (139)
117 cd04949 GT1_gtfA_like This fam 46.7 74 0.0016 31.9 7.8 117 338-464 219-346 (372)
118 COG1158 Rho Transcription term 45.6 1.4E+02 0.0031 30.5 9.1 100 110-210 162-267 (422)
119 cd03813 GT1_like_3 This family 44.2 1.3E+02 0.0027 32.0 9.4 77 338-415 308-399 (475)
120 PF05014 Nuc_deoxyrib_tr: Nucl 43.9 1.3E+02 0.0028 25.0 7.6 73 338-422 13-101 (113)
121 KOG3974 Predicted sugar kinase 41.4 2.4E+02 0.0051 27.9 9.5 115 296-429 93-210 (306)
122 PRK07313 phosphopantothenoylcy 41.4 45 0.00098 30.8 4.7 44 122-168 1-44 (182)
123 PRK05920 aromatic acid decarbo 41.1 43 0.00094 31.6 4.6 44 122-168 3-46 (204)
124 PRK12608 transcription termina 41.0 1.4E+02 0.0031 30.9 8.7 91 121-211 132-228 (380)
125 cd03818 GT1_ExpC_like This fam 40.9 1.5E+02 0.0032 30.3 9.1 75 379-464 288-367 (396)
126 cd03466 Nitrogenase_NifN_2 Nit 40.4 2.2E+02 0.0049 29.9 10.4 81 339-420 310-400 (429)
127 PRK02797 4-alpha-L-fucosyltran 39.2 2.1E+02 0.0046 28.9 9.2 74 342-415 162-255 (322)
128 PRK05647 purN phosphoribosylgl 39.2 2.3E+02 0.0049 26.5 9.2 83 123-211 2-89 (200)
129 cd07025 Peptidase_S66 LD-Carbo 39.2 1.2E+02 0.0027 29.9 7.8 82 339-420 14-120 (282)
130 cd01968 Nitrogenase_NifE_I Nit 39.0 1.5E+02 0.0033 30.9 8.8 77 343-420 301-384 (410)
131 PRK08462 biotin carboxylase; V 38.7 91 0.002 32.8 7.2 83 120-210 2-84 (445)
132 PF11071 DUF2872: Protein of u 38.5 1.7E+02 0.0037 25.7 7.3 104 344-461 14-140 (141)
133 TIGR01286 nifK nitrogenase mol 37.7 1.7E+02 0.0038 31.6 9.2 81 339-420 373-465 (515)
134 TIGR01369 CPSaseII_lrg carbamo 37.2 90 0.002 37.0 7.4 82 118-210 2-89 (1050)
135 PRK12815 carB carbamoyl phosph 37.1 1.1E+02 0.0024 36.3 8.2 81 118-210 3-90 (1068)
136 PRK12767 carbamoyl phosphate s 35.9 1.8E+02 0.0039 28.8 8.6 77 122-210 1-77 (326)
137 KOG1198 Zinc-binding oxidoredu 35.7 1.6E+02 0.0035 30.1 8.2 76 123-212 159-235 (347)
138 PRK12678 transcription termina 35.6 1.1E+02 0.0024 33.7 7.1 90 122-211 416-511 (672)
139 TIGR02699 archaeo_AfpA archaeo 35.1 72 0.0016 29.3 4.9 43 124-168 1-44 (174)
140 COG1819 Glycosyl transferases, 34.1 2.1E+02 0.0045 29.9 8.9 116 338-463 251-368 (406)
141 PRK14478 nitrogenase molybdenu 34.0 1.6E+02 0.0035 31.4 8.2 75 343-420 338-421 (475)
142 PLN02591 tryptophan synthase 33.8 4.5E+02 0.0098 25.5 11.8 20 379-398 198-218 (250)
143 TIGR01283 nifE nitrogenase mol 33.2 3.3E+02 0.0071 28.9 10.4 75 343-418 340-421 (456)
144 PRK05294 carB carbamoyl phosph 33.2 1.1E+02 0.0024 36.3 7.4 82 118-210 3-90 (1066)
145 cd01976 Nitrogenase_MoFe_alpha 33.2 4.9E+02 0.011 27.3 11.5 40 379-419 355-396 (421)
146 PRK09375 quinolinate synthetas 33.0 1.9E+02 0.0041 29.3 8.0 88 363-459 195-292 (319)
147 PLN02735 carbamoyl-phosphate s 32.8 1.2E+02 0.0026 36.2 7.5 83 118-211 19-107 (1102)
148 PRK15490 Vi polysaccharide bio 32.7 2.4E+02 0.0052 31.0 9.1 80 339-418 414-504 (578)
149 PRK02308 uvsE putative UV dama 32.3 1.7E+02 0.0037 29.3 7.6 73 302-400 139-212 (303)
150 PF00289 CPSase_L_chain: Carba 30.9 69 0.0015 26.9 3.8 80 121-208 1-80 (110)
151 PTZ00378 hypothetical protein; 30.8 99 0.0022 33.3 5.8 42 379-420 407-460 (518)
152 TIGR01282 nifD nitrogenase mol 30.7 2.8E+02 0.006 29.6 9.3 69 347-416 353-428 (466)
153 TIGR03646 YtoQ_fam YtoQ family 30.5 3.6E+02 0.0078 23.7 8.0 103 344-460 17-142 (144)
154 PF13844 Glyco_transf_41: Glyc 30.4 1.4E+02 0.0031 31.9 6.9 42 379-421 349-395 (468)
155 PRK14099 glycogen synthase; Pr 30.4 6.8E+02 0.015 26.7 12.3 78 338-415 310-398 (485)
156 cd04950 GT1_like_1 Glycosyltra 30.0 1.8E+02 0.004 29.5 7.6 44 373-416 253-308 (373)
157 COG4671 Predicted glycosyl tra 29.6 1.2E+02 0.0027 31.1 5.9 89 121-210 8-114 (400)
158 PF04263 TPK_catalytic: Thiami 29.5 74 0.0016 27.4 3.8 37 385-421 9-45 (123)
159 PRK09932 glycerate kinase II; 29.3 72 0.0016 33.1 4.3 42 379-420 272-326 (381)
160 PRK09376 rho transcription ter 28.7 1.6E+02 0.0035 30.9 6.8 88 122-211 169-264 (416)
161 TIGR02113 coaC_strep phosphopa 28.3 83 0.0018 28.9 4.2 43 123-168 1-43 (177)
162 cd04946 GT1_AmsK_like This fam 28.3 3.8E+02 0.0082 27.7 9.7 116 338-463 245-377 (407)
163 COG1576 Uncharacterized conser 28.0 2.3E+02 0.0051 25.5 6.8 28 335-362 79-108 (155)
164 TIGR03087 stp1 sugar transfera 27.9 1.7E+02 0.0036 29.9 7.0 95 354-463 262-362 (397)
165 PRK10342 glycerate kinase I; P 27.8 69 0.0015 33.3 3.9 42 379-420 272-326 (381)
166 PRK08591 acetyl-CoA carboxylas 27.8 1.5E+02 0.0033 31.1 6.7 81 122-210 2-82 (451)
167 PLN02939 transferase, transfer 27.4 9E+02 0.019 28.5 12.9 46 113-162 472-525 (977)
168 PLN02939 transferase, transfer 27.4 72 0.0016 37.1 4.3 78 339-416 795-886 (977)
169 PF13439 Glyco_transf_4: Glyco 27.4 1.3E+02 0.0028 25.8 5.2 67 136-206 15-84 (177)
170 TIGR00045 glycerate kinase. Th 27.4 79 0.0017 32.8 4.2 43 379-421 271-326 (375)
171 cd01133 F1-ATPase_beta F1 ATP 27.2 3E+02 0.0064 27.3 8.1 89 123-211 70-171 (274)
172 TIGR01162 purE phosphoribosyla 27.1 1.4E+02 0.003 26.9 5.3 67 354-420 2-86 (156)
173 TIGR02015 BchY chlorophyllide 27.1 2.6E+02 0.0056 29.4 8.2 76 343-419 299-382 (422)
174 cd01965 Nitrogenase_MoFe_beta_ 26.2 3.4E+02 0.0075 28.4 9.0 78 342-420 312-399 (428)
175 TIGR01284 alt_nitrog_alph nitr 26.1 4.8E+02 0.01 27.7 10.1 75 343-418 339-421 (457)
176 PHA01630 putative group 1 glyc 25.9 4.3E+02 0.0092 26.6 9.3 78 338-419 157-242 (331)
177 PRK14477 bifunctional nitrogen 25.7 4.8E+02 0.01 30.5 10.7 77 343-420 334-417 (917)
178 cd01973 Nitrogenase_VFe_beta_l 25.6 4.1E+02 0.009 28.2 9.5 81 339-420 315-409 (454)
179 PF07429 Glyco_transf_56: 4-al 25.4 4.9E+02 0.011 26.8 9.3 99 354-461 218-331 (360)
180 PHA03392 egt ecdysteroid UDP-g 25.3 4E+02 0.0086 28.8 9.4 134 310-464 296-433 (507)
181 PLN02501 digalactosyldiacylgly 25.3 2.7E+02 0.0058 31.7 8.0 82 339-420 562-652 (794)
182 COG0421 SpeE Spermidine syntha 25.2 83 0.0018 31.3 3.8 96 106-210 61-157 (282)
183 TIGR03590 PseG pseudaminic aci 25.1 6.5E+02 0.014 24.5 10.3 90 121-228 169-264 (279)
184 PRK12815 carB carbamoyl phosph 25.0 1.2E+03 0.027 27.7 17.0 79 121-210 554-638 (1068)
185 COG0648 Nfo Endonuclease IV [D 24.6 1.5E+02 0.0032 29.4 5.4 26 381-406 156-182 (280)
186 PF01408 GFO_IDH_MocA: Oxidore 24.6 2.7E+02 0.0059 22.7 6.5 82 123-224 1-84 (120)
187 TIGR00732 dprA DNA protecting 24.4 6.1E+02 0.013 24.0 9.8 89 310-421 98-192 (220)
188 PF00731 AIRC: AIR carboxylase 24.0 1.5E+02 0.0032 26.6 4.8 67 354-420 4-88 (150)
189 TIGR00715 precor6x_red precorr 23.9 3.1E+02 0.0068 26.7 7.6 73 123-211 1-74 (256)
190 TIGR02932 vnfK_nitrog V-contai 23.7 4.2E+02 0.0091 28.2 9.1 81 339-420 319-412 (457)
191 PLN02366 spermidine synthase 23.7 1.9E+02 0.004 29.1 6.1 46 107-159 77-122 (308)
192 PLN02210 UDP-glucosyl transfer 23.7 3.8E+02 0.0082 28.5 8.8 137 310-462 269-414 (456)
193 COG1448 TyrB Aspartate/tyrosin 23.6 4.6E+02 0.01 27.3 8.8 36 308-352 170-205 (396)
194 COG1182 AcpD Acyl carrier prot 23.5 1.7E+02 0.0037 27.5 5.3 48 122-175 1-53 (202)
195 PRK08305 spoVFB dipicolinate s 23.5 1.4E+02 0.003 28.0 4.7 46 121-168 4-49 (196)
196 PRK12833 acetyl-CoA carboxylas 23.4 3.4E+02 0.0074 28.8 8.4 82 120-210 3-85 (467)
197 COG1036 Archaeal flavoproteins 23.3 1.8E+02 0.0039 26.5 5.1 46 122-168 8-54 (187)
198 KOG1838 Alpha/beta hydrolase [ 23.2 54 0.0012 34.3 2.1 58 111-168 143-213 (409)
199 PLN02316 synthase/transferase 22.9 5.6E+02 0.012 30.4 10.4 79 338-416 855-949 (1036)
200 PLN02949 transferase, transfer 22.7 2.6E+02 0.0057 29.7 7.3 40 120-160 31-74 (463)
201 COG0159 TrpA Tryptophan syntha 22.5 7.5E+02 0.016 24.4 11.0 20 379-398 214-233 (265)
202 TIGR02852 spore_dpaB dipicolin 22.5 1.5E+02 0.0032 27.6 4.7 44 123-168 1-44 (187)
203 PTZ00081 enolase; Provisional 22.2 2.7E+02 0.0058 29.6 7.1 82 336-419 309-410 (439)
204 PF04577 DUF563: Protein of un 21.8 1.2E+02 0.0025 27.8 4.0 62 339-419 119-182 (206)
205 COG2871 NqrF Na+-transporting 21.6 4.8E+02 0.01 26.2 8.1 90 89-179 235-341 (410)
206 COG0148 Eno Enolase [Carbohydr 21.6 2.7E+02 0.0058 29.1 6.6 36 380-415 339-385 (423)
207 PF09505 Dimeth_Pyl: Dimethyla 21.3 87 0.0019 31.6 3.0 32 128-159 213-244 (466)
208 TIGR01426 MGT glycosyltransfer 21.3 4.5E+02 0.0098 26.7 8.7 27 113-139 14-40 (392)
209 PRK14719 bifunctional RNAse/5- 21.2 1.6E+02 0.0034 30.4 5.1 83 335-418 4-103 (360)
210 PTZ00372 endonuclease 4-like p 21.2 5.4E+02 0.012 27.1 9.0 28 380-407 285-316 (413)
211 cd03825 GT1_wcfI_like This fam 21.1 1.9E+02 0.0042 28.3 5.7 39 123-163 1-41 (365)
212 PF12466 GDH_N: Glutamate dehy 21.0 52 0.0011 24.1 1.1 18 136-153 32-49 (60)
213 PF02601 Exonuc_VII_L: Exonucl 20.9 4.3E+02 0.0094 26.3 8.2 39 116-160 8-49 (319)
214 PRK02910 light-independent pro 20.8 6.1E+02 0.013 27.4 9.8 80 340-420 304-390 (519)
215 TIGR01862 N2-ase-Ialpha nitrog 20.8 1E+03 0.022 25.1 12.4 75 343-418 331-413 (443)
216 TIGR03875 RNA_lig_partner RNA 20.8 7.2E+02 0.016 23.5 9.3 118 287-415 44-194 (206)
217 PF13638 PIN_4: PIN domain; PD 20.6 1.4E+02 0.0031 25.2 4.1 35 382-416 93-132 (133)
218 PLN02448 UDP-glycosyltransfera 20.4 1.9E+02 0.004 30.8 5.6 60 120-180 8-70 (459)
219 TIGR00550 nadA quinolinate syn 20.2 2.8E+02 0.006 28.0 6.5 78 132-211 33-113 (310)
220 PRK06111 acetyl-CoA carboxylas 20.2 3E+02 0.0065 28.8 7.2 80 122-209 2-81 (450)
No 1
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=100.00 E-value=1.3e-52 Score=428.07 Aligned_cols=321 Identities=17% Similarity=0.149 Sum_probs=249.2
Q ss_pred CCccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCC--CCChHHHHHHHHH
Q 012283 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD--WPEPAEYTDILGV 197 (467)
Q Consensus 120 ~~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~--~~~~~~~~~l~~~ 197 (467)
+++||||||++++|||+|+++|++++||++||+++|+|++.+.++++++.+|+||+|+.++++.. +..+..+++++++
T Consensus 3 ~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~~~~~~~~~~~~~~l~~~ 82 (352)
T PRK10422 3 KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKKAGASEKIKNFFSLIKV 82 (352)
T ss_pred CCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999987641 1234567888999
Q ss_pred hHhCCCcEEEEcccCCchHHHHHHHhCCCeeEeccCCCCCccccccccceeecCCccccccchhhHHHHHHHHcCCCCCC
Q 012283 198 MKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRS 277 (467)
Q Consensus 198 Lr~~~yDlvI~l~~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~~lL~~Lgi~~~~ 277 (467)
||+++||++||++. +++++++++++|++.||||....+....|..+|++.++... .+....+.++++.+|+...
T Consensus 83 lr~~~yD~vidl~~-~~~s~ll~~l~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~----~h~~~~~~~ll~~lg~~~~- 156 (352)
T PRK10422 83 LRANKYDLIVNLTD-QWMVALLVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQG----GHIVESNLSVLTPLGLSSL- 156 (352)
T ss_pred HhhCCCCEEEEccc-chHHHHHHHHhCCCeEEeeccccccchhHHHHhcccCCCCC----cchHHhhHhHHhhcCCCCC-
Confidence 99999999999996 57899999999999999998554332234446666553221 1223333457788887531
Q ss_pred CCCCCCCCceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEEE
Q 012283 278 VPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFV 356 (467)
Q Consensus 278 v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~Vvl 356 (467)
.+.+.+.+++++.+.+++.+...+.. +++|+||||++. ..| +||.|+|++|++.|.+++ .|++
T Consensus 157 -----~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~i~pga~~---------~~K-~Wp~e~fa~l~~~L~~~~~~vvl 220 (352)
T PRK10422 157 -----VKETTMSYRPESWKRMRRQLDHLGVT-QNYVVIQPTARQ---------IFK-CWDNDKFSAVIDALQARGYEVVL 220 (352)
T ss_pred -----CCcceeecCHHHHHHHHHHHHhcCCC-CCeEEEecCCCc---------ccc-CCCHHHHHHHHHHHHHCCCeEEE
Confidence 23336667776666666666655543 689999997543 346 699999999999998776 5788
Q ss_pred ecCccc--HHHHHHHHhcCC--CC---cccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCCCCCccccC
Q 012283 357 IPHEKE--REGVEDVVGDDA--SI---VFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPN 429 (467)
Q Consensus 357 ~g~~~e--~~~~~~i~~~~~--~~---~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~p~~~~~P~ 429 (467)
+|+++| .+.+++|.+.+. .. ..++||.|++++|++|+++||||||+||||+|+|+|||+|||+|++. .|+|+
T Consensus 221 ~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDSGp~HlAaA~g~P~v~lfGpt~p~-~~~P~ 299 (352)
T PRK10422 221 TSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDSAPAHIAAAVNTPLICLFGATDHI-FWRPW 299 (352)
T ss_pred EcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCCHHHHHHHHcCCCEEEEECCCCcc-ccCCC
Confidence 888754 445577776532 22 22789999999999999999999999999999999999999999864 68898
Q ss_pred CCCCceEeec-------------CCCCCCCCCCHHHHHHHHHHHHHhh
Q 012283 430 AEEKKCTVIS-------------SRTGKLIDTPVEAVLNAMQIFNESL 464 (467)
Q Consensus 430 ~~~~~c~i~~-------------~~~~cm~~Is~e~V~~ai~~ll~~~ 464 (467)
+++..++.. ....||++|+||+|++++++++.++
T Consensus 300 -~~~~~v~~~~~~~~~pc~~~~~~~~~Cm~~I~~~~V~~~~~~ll~~~ 346 (352)
T PRK10422 300 -SDNMIQFWAGDYQEMPTRDELDRNEKYLSVIPAADVIAAVDKLLPSS 346 (352)
T ss_pred -CCCeeEEECCCcccCcCcccCCccccHhhcCCHHHHHHHHHHHHhcc
Confidence 543322211 1246999999999999999998765
No 2
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=100.00 E-value=1.5e-52 Score=426.35 Aligned_cols=314 Identities=20% Similarity=0.184 Sum_probs=248.0
Q ss_pred EEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCC---CCChHHHHHHHHHhHh
Q 012283 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD---WPEPAEYTDILGVMKN 200 (467)
Q Consensus 124 rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~---~~~~~~~~~l~~~Lr~ 200 (467)
|||||++++|||+|+++|++++||++||+++|+|++.+.++++++.+|+||+|+.++.+.. +.++..+++++++||+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~~~~~~~~~~~l~~~lr~ 80 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKAKAGERKLANQFHLIKVLRA 80 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhhcchHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999986542 2234566788999999
Q ss_pred CCCcEEEEcccCCchHHHHHHHhCCCeeEeccCCCCCccccccccceeecCCccccccchhhHHH---HHHHHcCCCCCC
Q 012283 201 RYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYE---QMVDWLGRPFRS 277 (467)
Q Consensus 201 ~~yDlvI~l~~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~---~lL~~Lgi~~~~ 277 (467)
++||++||++. +++++++++++|++.|+||....+....|..+|++.+..... ...|.++ ++++.+|+...
T Consensus 81 ~~yD~vidl~~-~~~s~ll~~l~~a~~riG~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~~~l~ll~~lg~~~~- 154 (344)
T TIGR02201 81 NRYDLVVNLTD-QWMVAILVKLLNARVKIGFDYPKRRSAFWRKSFTALAPLQGG----NTLHTVEQNLSVLTPLGLDSL- 154 (344)
T ss_pred CCCCEEEECCc-chHHHHHHHhcCCCeEEeecCCCcchhHHHHHhccccCCCCC----CccchHhhhhhHHhhcCCCCC-
Confidence 99999999996 578999999999999999975433222344466665533221 1235554 46677887532
Q ss_pred CCCCCCCCceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEEE
Q 012283 278 VPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFV 356 (467)
Q Consensus 278 v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~Vvl 356 (467)
.+...+.+++++.+.++.++.+.+. .+++|+||||++ +..| +||.|+|++|++.|.+++ .|++
T Consensus 155 -----~~~~~l~~~~~~~~~~~~~l~~~~~-~~~~i~i~p~a~---------~~~K-~Wp~e~~~~l~~~l~~~~~~ivl 218 (344)
T TIGR02201 155 -----VKQTRMSYPPADWKAMRALLDEAGV-GQNYIVIQPTSR---------WFFK-CWDNDRFSALIDALHARGYEVVL 218 (344)
T ss_pred -----CCceeeecCHHHHHHHHHHHHhcCC-CCCEEEEeCCCC---------cccc-CCCHHHHHHHHHHHHhCCCeEEE
Confidence 1223678888887777777776654 368999999654 3456 699999999999998776 5888
Q ss_pred ecCcc--cHHHHHHHHhcCCC--C---cccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCCCCCccccC
Q 012283 357 IPHEK--EREGVEDVVGDDAS--I---VFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPN 429 (467)
Q Consensus 357 ~g~~~--e~~~~~~i~~~~~~--~---~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~p~~~~~P~ 429 (467)
+|+++ |++.++++.+.++. + ..++||.|++++|++|+++||||||+||||+|+|+|||+|||++++. .|+|+
T Consensus 219 ~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSGp~HlAaA~g~p~v~Lfgpt~p~-~~~P~ 297 (344)
T TIGR02201 219 TSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSVPMHMAAALGTPLVALFGPSKHI-FWRPW 297 (344)
T ss_pred ecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCHHHHHHHHcCCCEEEEECCCCcc-ccccC
Confidence 88876 56677888766543 2 22789999999999999999999999999999999999999999864 78898
Q ss_pred CCCCceEeec---------------CCCCCCCCCCHHHHHHHHHHHH
Q 012283 430 AEEKKCTVIS---------------SRTGKLIDTPVEAVLNAMQIFN 461 (467)
Q Consensus 430 ~~~~~c~i~~---------------~~~~cm~~Is~e~V~~ai~~ll 461 (467)
+..+.++.. .+..||.+|+||+|+++++++|
T Consensus 298 -~~~~~~l~~~~~~~~pc~~~~~~~~~~~cm~~i~~~~V~~~~~~~l 343 (344)
T TIGR02201 298 -SNNMIQFWAGDYGELPDPDQRDTNTRERYLSVIPAAAVIAAVDKLL 343 (344)
T ss_pred -CCCeeEEeCCCcccCCChhhcCCCchhhHHhcCCHHHHHHHHHHhc
Confidence 544433322 1246899999999999999886
No 3
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=100.00 E-value=2.2e-51 Score=418.49 Aligned_cols=316 Identities=18% Similarity=0.156 Sum_probs=236.8
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhHhCC
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRY 202 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~~~ 202 (467)
||||||++++|||+|+++|++++||++||+++|+|++.+.++++++.+|+||+|++++++.....+....+++++||+++
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~~~~~~~~~~~~l~~~lr~~~ 80 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRRLGHSLREKR 80 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccccchhhhHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999987643334556778999999999
Q ss_pred CcEEEEcccCCchHHHHHHHhCCCeeEeccCCCCCccccccccceeecCCccccccchhhHHHHHHHH---cCCCC--CC
Q 012283 203 YDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDW---LGRPF--RS 277 (467)
Q Consensus 203 yDlvI~l~~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~~lL~~---Lgi~~--~~ 277 (467)
||++||++. +++++++++++|++.|+||....+. .++++....... ...|.+++.++. ++... ..
T Consensus 81 yD~vidl~~-~~~s~~l~~~~~~~~rig~~~~~~~-----~~~~~~~~~~~~----~~~h~~~~~~~l~~~~~~~~~~~~ 150 (348)
T PRK10916 81 YDRAYVLPN-SFKSALVPFFAGIPHRTGWRGEMRY-----GLLNDLRVLDKE----AFPLMVERYVALAYDKGVMRTAAD 150 (348)
T ss_pred CCEEEECCC-cHHHHHHHHHcCCCeEeecccCccc-----cccccccccCcc----cCcHHHHHHHHHhccccccccccc
Confidence 999999996 6899999999999999999744322 244332211111 123555554433 33210 00
Q ss_pred CCCCCCCCceeecCHHHHHHHHHHHHHcCCC-CCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEE
Q 012283 278 VPRHPVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLF 355 (467)
Q Consensus 278 v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~-~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~Vv 355 (467)
.+. ..+..++.+++++.+.+ +...++. .+++|+||||++. +..| +||.|+|++|++.|.+.+ .|+
T Consensus 151 ~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~i~pga~~--------~~~K-~Wp~e~~a~l~~~l~~~~~~vv 217 (348)
T PRK10916 151 LPQ-PLLWPQLQVSEGEKSET---CAAFSLSSERPIIGFCPGAEF--------GPAK-RWPHYHYAELAQQLIDEGYQVV 217 (348)
T ss_pred CCC-CcCCCccccCHHHHHHH---HHHcCCCCCCCEEEEeCCCCC--------cccc-CCCHHHHHHHHHHHHHCCCeEE
Confidence 000 01111445555443332 2333332 4689999997542 1345 699999999999998666 588
Q ss_pred EecCcccHHHHHHHHhcCCC--------CcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCCCCCccc
Q 012283 356 VIPHEKEREGVEDVVGDDAS--------IVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFV 427 (467)
Q Consensus 356 l~g~~~e~~~~~~i~~~~~~--------~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~p~~~~~ 427 (467)
++|+++|++.++++.+.++. +..++||.|++++|++|++|||||||+||||+|+|+|||+|||+|+|. .|.
T Consensus 218 l~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDTGp~HlAaA~g~P~valfGpt~p~-~~~ 296 (348)
T PRK10916 218 LFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDSGLMHVAAALNRPLVALYGPSSPD-FTP 296 (348)
T ss_pred EEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHHHhCCEEEecCChHHHHHHHhCCCEEEEECCCCcc-ccC
Confidence 89999999999998776542 122689999999999999999999999999999999999999999876 556
Q ss_pred cCCCCCceEeec--------------CCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 428 PNAEEKKCTVIS--------------SRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 428 P~~~~~~c~i~~--------------~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
|+ +....++.. ++..||++|+||+|++++++++.+
T Consensus 297 P~-~~~~~vi~~~~~~~~~~~~~c~~~~~~cm~~I~~~~V~~~~~~ll~~ 345 (348)
T PRK10916 297 PL-SHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQRVLEELNALLLQ 345 (348)
T ss_pred CC-CCCeEEEEccCCcccccCCCCCCchhhhhhhCCHHHHHHHHHHHhhc
Confidence 88 433322211 134599999999999999998864
No 4
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=100.00 E-value=7.9e-51 Score=411.93 Aligned_cols=310 Identities=20% Similarity=0.210 Sum_probs=238.0
Q ss_pred EEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhHhCCC
Q 012283 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYY 203 (467)
Q Consensus 124 rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~~~y 203 (467)
|||||++++|||+|+++|++++||++||+++|||++.+.++++++.+|+||+|+.++.+.....+..+.+++++||+++|
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~~~~~lr~~~y 80 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLGHGALELTERRRLGRSLREERY 80 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCcccchhhhHHHHHHHHHhhcCC
Confidence 69999999999999999999999999999999999999999999999999999998865433445667889999999999
Q ss_pred cEEEEcccCCchHHHHHHHhCCCeeEeccCCCCCccccccccceeecCCccccccchhhHHHHHHH---HcCCCCCCCCC
Q 012283 204 DMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVD---WLGRPFRSVPR 280 (467)
Q Consensus 204 DlvI~l~~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~~lL~---~Lgi~~~~v~~ 280 (467)
|++|+++. +++++++++++|++.|+||.+..+. .++++....... ...|++++++. .+|... +.
T Consensus 81 D~vi~l~~-~~~s~ll~~~~~~~~riG~~~~~~~-----~~~~~~~~~~~~----~~~h~~~~~~~l~~~~~~~~---~~ 147 (334)
T TIGR02195 81 DQAIVLPN-SLKSALIPFFAGIPHRTGWRGEMRY-----GLLNDVRALDKE----RLPLMVERYIALAYDKGQDL---PQ 147 (334)
T ss_pred CEEEECCC-CHHHHHHHHHcCCCceeeecCCCcc-----eecccCcCCCcc----cccHHHHHHHHHhccccCCC---CC
Confidence 99999996 5799999999999999999754322 245554322221 12355665443 344321 11
Q ss_pred CCCCCceeecCHHHHHHHHHHHHHcCCC-CCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEEEec
Q 012283 281 HPVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIP 358 (467)
Q Consensus 281 ~~~p~~~l~l~~~~~~~a~~~l~~~~l~-~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~Vvl~g 358 (467)
. .+...+.+++++.+. .....++. .+++|+||||++. +..| +||.|+|++|++.|.+++ .|+++|
T Consensus 148 ~-~~~p~l~~~~~~~~~---~~~~~~~~~~~~~i~i~pga~~--------~~~K-~Wp~e~~~~li~~l~~~~~~ivl~G 214 (334)
T TIGR02195 148 P-LPRPQLQVSPAEQAA---ALAKFGLDTERPIIAFCPGAEF--------GPAK-RWPHEHYAELAKRLIDQGYQVVLFG 214 (334)
T ss_pred C-CCCCcccCCHHHHHH---HHHHcCCCCCCCEEEEcCCCCC--------CccC-CCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 1 122255566554333 23344443 3689999997642 1345 699999999999998776 588899
Q ss_pred CcccHHHHHHHHhcCCC-Cc---ccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCCCCCccccCCCCCc
Q 012283 359 HEKEREGVEDVVGDDAS-IV---FITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKK 434 (467)
Q Consensus 359 ~~~e~~~~~~i~~~~~~-~~---~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~ 434 (467)
+++|++..+++.+..+. .. .++||.|++++|++|+++||||||+||||+|+|+|+|+|||+|+|. .|.|+ +.++
T Consensus 215 ~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~~DSGp~HlAaA~~~P~i~lfG~t~p~-~~~P~-~~~~ 292 (334)
T TIGR02195 215 SAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALAKAVVTNDSGLMHVAAALNRPLVALYGSTSPD-FTPPL-SEKA 292 (334)
T ss_pred ChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhCCEEEeeCCHHHHHHHHcCCCEEEEECCCChh-hcCCC-CCCc
Confidence 99999999998876653 22 3789999999999999999999999999999999999999999876 45677 4332
Q ss_pred eEee--------------cCCCCCCCCCCHHHHHHHHHHHH
Q 012283 435 CTVI--------------SSRTGKLIDTPVEAVLNAMQIFN 461 (467)
Q Consensus 435 c~i~--------------~~~~~cm~~Is~e~V~~ai~~ll 461 (467)
.++. .++..||++|+||+|++++++++
T Consensus 293 ~vl~~~~~c~pC~~~~c~~~~~~Cm~~I~~~~V~~~~~~ll 333 (334)
T TIGR02195 293 EVIRLNLECSPCFKRDCPYGHHQCLIDLSPEQVLEALNELL 333 (334)
T ss_pred eEEecCCCccCCCCCCCCCCchhhhccCCHHHHHHHHHHhh
Confidence 1111 01346999999999999999875
No 5
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=100.00 E-value=4.5e-50 Score=404.57 Aligned_cols=309 Identities=16% Similarity=0.188 Sum_probs=231.9
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCC-------hHHHHHHH
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPE-------PAEYTDIL 195 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~-------~~~~~~l~ 195 (467)
||||||++++|||+|+++|++++||++||+++|||+|.+.++++++.+|+||+|+.++.+. |++ ...+.+++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVDRVIPVAIRR-WRKAWFSAPIRAERKAFR 79 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCCCccEEEeechhH-hhhcccchhHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999988542 111 12467889
Q ss_pred HHhHhCCCcEEEEcccCCchHHHHHHHhCCCeeEeccCCCCCccccccccceeecCCccccccchhhHHHHHH-HHcCCC
Q 012283 196 GVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMV-DWLGRP 274 (467)
Q Consensus 196 ~~Lr~~~yDlvI~l~~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~~lL-~~Lgi~ 274 (467)
++||+++||++||++. +++++++.++++++.|+||..........++++++.+..... .+....+.+++ +.+|++
T Consensus 80 ~~lr~~~yD~vidl~~-~~~s~~l~~~~~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~l~~~~lg~~ 155 (322)
T PRK10964 80 EALQAEQYDAVIDAQG-LVKSAALVTRLAHGVKHGMDWQSAREPLASLFYNRRHHIAKQ---QHAVERTRELFAKSLGYS 155 (322)
T ss_pred HHHhccCCCEEEEccc-hHHHHHHHHHhcCCcEecCCCCcccchHhHhhccCccCCCcc---cCHHHHHHHHHHHHcCCC
Confidence 9999999999999995 567888776677778999974322112223466665533221 12223333444 567775
Q ss_pred CCCCCCCCCCCceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-C
Q 012283 275 FRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-P 353 (467)
Q Consensus 275 ~~~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~ 353 (467)
.. .. ..+...++.++.+.....+++|++++|++. ..| +||.|+|++|+++|.+++ .
T Consensus 156 ~~------~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~---------~~k-~Wp~e~~a~li~~l~~~~~~ 212 (322)
T PRK10964 156 KP------QT-------QGDYAIAQHFLTNLPADAGPYLVFLHATTR---------DDK-HWPEAHWRELIGLLAPSGLR 212 (322)
T ss_pred cc------CC-------ccchhhhhhhcccccccCCCeEEEEeCCCc---------ccc-cCCHHHHHHHHHHHHHCCCe
Confidence 21 01 011122333333332234688888876542 335 699999999999998776 4
Q ss_pred EEEe-cCcccHHHHHHHHhcCCCCc--ccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCCCCCccccCC
Q 012283 354 LFVI-PHEKEREGVEDVVGDDASIV--FITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNA 430 (467)
Q Consensus 354 Vvl~-g~~~e~~~~~~i~~~~~~~~--~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~p~~~~~P~~ 430 (467)
|+++ |+++|++.++++.+.++.+. .+++|.|++++|++|+++||||||+||||+|+|+|||+|||+|++. .|+|+
T Consensus 213 ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~I~nDSGp~HlA~A~g~p~valfGpt~p~-~~~p~- 290 (322)
T PRK10964 213 IKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAVVSVDTGLSHLTAALDRPNITLYGPTDPG-LIGGY- 290 (322)
T ss_pred EEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEEEecCCcHHHHHHHhCCCEEEEECCCCcc-cccCC-
Confidence 6664 88899999999988765432 3789999999999999999999999999999999999999999875 57899
Q ss_pred CCCceEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 012283 431 EEKKCTVISSRTGKLIDTPVEAVLNAMQIFNE 462 (467)
Q Consensus 431 ~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~ 462 (467)
+++...+ .....||++|+||+|+++++++|.
T Consensus 291 ~~~~~~~-~~~~~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 291 GKNQHAC-RSPGKSMADLSAETVFQKLETLIS 321 (322)
T ss_pred CCCceee-cCCCcccccCCHHHHHHHHHHHhh
Confidence 6544332 334689999999999999998864
No 6
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=100.00 E-value=1.8e-48 Score=392.12 Aligned_cols=308 Identities=17% Similarity=0.176 Sum_probs=229.2
Q ss_pred EEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCC------hHHHHHHHHH
Q 012283 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPE------PAEYTDILGV 197 (467)
Q Consensus 124 rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~------~~~~~~l~~~ 197 (467)
|||||++++|||+|+++|++++||++||+++||+++.+.++++++.+|+||+|+.++.+...+. ...+..+.+.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVALRRWRKTLFSAATWREIKALRAL 80 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEechhhhhhccccchhHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999986531111 1234456678
Q ss_pred hHhCCCcEEEEcccCCchHHHHHHHhCCCeeEeccCCCCCccccccccceeecCCccccccchhhHHHHHH-HHcCCCCC
Q 012283 198 MKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMV-DWLGRPFR 276 (467)
Q Consensus 198 Lr~~~yDlvI~l~~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~~lL-~~Lgi~~~ 276 (467)
||+++||++||++. +.++++++++++ +.|+||...........+++++.+..+.. .+....+.+++ +.+|+...
T Consensus 81 lr~~~yD~vi~~~~-~~~s~~l~~~~~-~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~ll~~~lg~~~~ 155 (319)
T TIGR02193 81 LRAERYDAVIDAQG-LIKSALVARMAR-GPRHGFDWRSAREPLASLFYNKRVGISYQ---QHAVERNRKLFALALGYPPP 155 (319)
T ss_pred Hhhccchhhhhhhh-hHHHHHHHHhhC-CceecCCCCccccHHHHHHhcCccCCCcc---cCHHHHHHHHHHHHcCCCCC
Confidence 89999999999986 578899999998 45999975432111123456655433321 12233333454 46777520
Q ss_pred CCCCCCCCCceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEE
Q 012283 277 SVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLF 355 (467)
Q Consensus 277 ~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~Vv 355 (467)
....+ ++.++.++. ...+. .. ..+++|+++||++. ..| +||.|+|++|++.|.+++ .++
T Consensus 156 ---~~~~~--~~~~~~~~~---~~~~~-~~-~~~~~i~i~~gas~---------~~K-~wp~e~~~~l~~~l~~~~~~~v 215 (319)
T TIGR02193 156 ---IAETI--DYGLARRAA---VAFLG-HA-LPAPYAVLLHATSR---------DDK-TWPEERWRELARLLLARGLQIV 215 (319)
T ss_pred ---CCCcc--ccCccchhh---hhhhh-cc-CCCCEEEEEeCCCc---------ccC-CCCHHHHHHHHHHHHHCCCeEE
Confidence 01122 444444332 12221 11 23689999997654 335 699999999999998766 455
Q ss_pred E-ecCcccHHHHHHHHhcCCCC--cccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCCCCCccccCCCC
Q 012283 356 V-IPHEKEREGVEDVVGDDASI--VFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEE 432 (467)
Q Consensus 356 l-~g~~~e~~~~~~i~~~~~~~--~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~ 432 (467)
+ +|+++|++..+++.+..++. ..++||.|++++|++|+++||||||+||||+|+|+|||+|||++++. .|+|+ +.
T Consensus 216 l~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l~I~~DSgp~HlAaa~g~P~i~lfg~t~p~-~~~P~-~~ 293 (319)
T TIGR02193 216 LPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADAVVGVDTGLTHLAAALDKPTVTLYGATDPG-RTGGY-GK 293 (319)
T ss_pred EeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCEEEeCCChHHHHHHHcCCCEEEEECCCCHh-hcccC-CC
Confidence 4 47788989888888766543 23789999999999999999999999999999999999999999764 68899 65
Q ss_pred CceEeecCCCCCCCCCCHHHHHHHHHHHH
Q 012283 433 KKCTVISSRTGKLIDTPVEAVLNAMQIFN 461 (467)
Q Consensus 433 ~~c~i~~~~~~cm~~Is~e~V~~ai~~ll 461 (467)
... ++. ..||++|+||+|++|++++|
T Consensus 294 ~~~-~~~--~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 294 PNV-ALL--GESGANPTPDEVLAALEELL 319 (319)
T ss_pred Cce-EEc--cCccCCCCHHHHHHHHHhhC
Confidence 543 443 45899999999999998875
No 7
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.7e-46 Score=378.85 Aligned_cols=312 Identities=21% Similarity=0.226 Sum_probs=237.7
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhHhC
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~~ 201 (467)
+||||||++++|||+|+++|+++.||++||+++|+|++.+.++++++.+|+|++|++++.++.-..+.++.++++.||++
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~~~~~~~~~~~~~l~~~lr~~ 80 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDKKKKGLGLKERLALLRTLRKE 80 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhccccccccccchHHHHHHHHHhhcc
Confidence 58999999999999999999999999999999999999999999999999999999866533102478899999999999
Q ss_pred CCcEEEEcccCCchHHHHHHHhCCCeeEeccCCCCCccccccccceeecCCccccccchhhHHHH---HHHHcCCCCCCC
Q 012283 202 YYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQ---MVDWLGRPFRSV 278 (467)
Q Consensus 202 ~yDlvI~l~~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~~---lL~~Lgi~~~~v 278 (467)
+||++||++. .++++++.++++++.|+||.........+..++++ +..+ ...|++++ +++.+|....
T Consensus 81 ~yD~vidl~~-~~ksa~l~~~~~~~~r~g~~~~~~r~~~~~~~~~~-~~~~------~~~~~~~~~~~l~~~~~~~~~-- 150 (334)
T COG0859 81 RYDAVIDLQG-LLKSALLALLLGIPFRIGFDKKSARELLLNKFYPR-LDKP------EGQHVVERYLALLEDLGLYPP-- 150 (334)
T ss_pred CCCEEEECcc-cHHHHHHHHHhCCCcccccccccchhHHHHHhhhc-cCcc------cchhHHHHHHHHHHHhcCCCC--
Confidence 9999999996 68999999999999999999533323222333332 2122 13566654 5566665431
Q ss_pred CCCCCCC--ceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEE
Q 012283 279 PRHPVPP--LRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLF 355 (467)
Q Consensus 279 ~~~~~p~--~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~Vv 355 (467)
..+. +.+..+..+... .+...+ ++||+|+||++. +..| +||.|+|++|++.|.+++ .|+
T Consensus 151 ---~~~~~~~~~~~~~~~~~~---~~~~~~---~~~i~i~pg~s~--------~~~K-~wp~e~~~~l~~~l~~~~~~Vv 212 (334)
T COG0859 151 ---PEPQLDFPLPRPPIELAK---NLAKFD---RPYIVINPGASR--------GSAK-RWPLEHYAELAELLIAKGYQVV 212 (334)
T ss_pred ---CCCccCcccccCHHHHHH---HHHhcC---CCeEEEeccccc--------cccC-CCCHHHHHHHHHHHHHCCCEEE
Confidence 0121 122222222211 112111 589999997433 3456 699999999999999998 588
Q ss_pred EecCcccHHHHHHHHhcCCCC---cccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCCCCCccccCCCC
Q 012283 356 VIPHEKEREGVEDVVGDDASI---VFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEE 432 (467)
Q Consensus 356 l~g~~~e~~~~~~i~~~~~~~---~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~ 432 (467)
++|+++|.+.+++|.+.+++. ..++||.|++++|++|++|||||||+||||+|+|+|+|+|||+|.+.. |.| +.+
T Consensus 213 l~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~I~~DSg~~HlAaA~~~P~I~iyg~t~~~~-~~p-~~~ 290 (334)
T COG0859 213 LFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLVIGNDSGPMHLAAALGTPTIALYGPTSPAF-TPP-PDP 290 (334)
T ss_pred EecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCEEEccCChHHHHHHHcCCCEEEEECCCCccc-cCC-CCc
Confidence 888889999999999888763 448999999999999999999999999999999999999999997654 444 222
Q ss_pred CceEe-------ecC----CCCCCCCCCHHHHHHHHHHHHHh
Q 012283 433 KKCTV-------ISS----RTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 433 ~~c~i-------~~~----~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
..+.+ .+. ...||++|++++|++++..++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 332 (334)
T COG0859 291 KLPGISGNLDCSPCKPSGGHHECLKDIEPEKVLEAAEALLAT 332 (334)
T ss_pred cceEeeccccccccccccchhcccccCCHHHHHHHHHHHhhc
Confidence 11111 012 34599999999999999998764
No 8
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=2.7e-42 Score=340.92 Aligned_cols=257 Identities=22% Similarity=0.236 Sum_probs=211.9
Q ss_pred EEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhHhCCC
Q 012283 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYY 203 (467)
Q Consensus 124 rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~~~y 203 (467)
||||++.++|||+|+++|++++||++||+++|+|++++.++++++.+|+||+|+.++.++..+++..+.+++++|++++|
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKHGKLGLGARRRLARALRRRRY 80 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcccccchHHHHHHHHHHhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999875433567788999999999999
Q ss_pred cEEEEcccCCchHHHHHHHhCCCeeEeccCCCCCccccccccceeecCCccccccchhhHHHHHHHHcCCCCCCCCCCCC
Q 012283 204 DMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPV 283 (467)
Q Consensus 204 DlvI~l~~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~~lL~~Lgi~~~~v~~~~~ 283 (467)
|++|+++. +.++.++.++++++.++||...... .+++ .
T Consensus 81 D~vi~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~------------------------------------~ 118 (279)
T cd03789 81 DLAIDLQG-SLRSALLPFLAGAPRRIGFDGERRR-----GLLT------------------------------------D 118 (279)
T ss_pred CEEEECCC-ccHHHHHHHHhCCCeEEEecCCccc-----cccc------------------------------------c
Confidence 99999996 5788888999999999998732210 0000 0
Q ss_pred CCceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEEEecCccc
Q 012283 284 PPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKE 362 (467)
Q Consensus 284 p~~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~Vvl~g~~~e 362 (467)
. + +++|++|||+++ ..| +||.|+|.+|++.|.+++ .|+++|+++|
T Consensus 119 ~-----~-------------------~~~i~i~~~~~~---------~~k-~w~~~~~~~l~~~l~~~~~~ivl~g~~~e 164 (279)
T cd03789 119 V-----V-------------------KPVVVLPPGASG---------PAK-RWPAERFAALADRLLARGARVVLTGGPAE 164 (279)
T ss_pred c-----c-------------------CCEEEECCCCCC---------ccc-cCCHHHHHHHHHHHHHCCCEEEEEechhh
Confidence 0 0 478999997654 335 599999999999999886 5888899999
Q ss_pred HHHHHHHHhcCC--CCc---ccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEe
Q 012283 363 REGVEDVVGDDA--SIV---FITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTV 437 (467)
Q Consensus 363 ~~~~~~i~~~~~--~~~---~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i 437 (467)
++..+++.+..+ ... ..+||.|+++++++|+++||+|||++|||+|+|+|+|+|||++++. .|+|+ +.....+
T Consensus 165 ~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Dsg~~HlA~a~~~p~i~l~g~~~~~-~~~p~-~~~~~~i 242 (279)
T cd03789 165 RELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDSGPMHLAAALGTPTVALFGPTDPA-RTGPP-GSRHRVV 242 (279)
T ss_pred HHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCCHHHHHHHHcCCCEEEEECCCCcc-ccCCC-CCCeEEE
Confidence 999998887652 222 2679999999999999999999999999999999999999999765 55687 3322111
Q ss_pred e---------------cCCCCCCCCCCHHHHHHHHH
Q 012283 438 I---------------SSRTGKLIDTPVEAVLNAMQ 458 (467)
Q Consensus 438 ~---------------~~~~~cm~~Is~e~V~~ai~ 458 (467)
. .....||+.|+||+|+++++
T Consensus 243 ~~~~~c~~c~~~~~~~~~~~~c~~~i~~~~v~~~~~ 278 (279)
T cd03789 243 RVDLPCCPCCFRRCCPLGHHRCMRDITPEEVLAAIR 278 (279)
T ss_pred EcCCCCCCCcCCCCCCCchhhHHHhCCHHHHHHHHh
Confidence 1 12347899999999999875
No 9
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=99.97 E-value=7e-31 Score=254.55 Aligned_cols=231 Identities=20% Similarity=0.279 Sum_probs=146.0
Q ss_pred HHHHHHHhHhCCCcEEEEcccCCchHHHHHHHhCCCeeEeccCCCCCccccccccceeecCCccccccchhhHHHHHHH-
Q 012283 191 YTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVD- 269 (467)
Q Consensus 191 ~~~l~~~Lr~~~yDlvI~l~~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~~lL~- 269 (467)
+++++++||+++||+|||++. +.++++++++++++.|+||...... ...+++..+..... .+..+.+.++++
T Consensus 1 ~~~l~~~Lr~~~yD~vid~~~-~~~s~~l~~~~~a~~riG~~~~~~~---~~~~~~~~~~~~~~---~~~v~~~~~ll~~ 73 (247)
T PF01075_consen 1 ILALIKKLRKEKYDLVIDLQG-SFRSALLARLSGAKIRIGFGKDDRG---RSLFYNRKVDRPPN---KHMVDRYLSLLSE 73 (247)
T ss_dssp HHHHHHHHCTSB-SEEEE-S--SHHHHHHTCCCSBSEEEEE-TTTSG---GGGGESEEE-TTSS---SSHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCCEEEECCC-CccHHHHHHHHhhccccccCccchh---hhhccccccccccc---chHHHHHHHHHHH
Confidence 357899999999999999996 6899999999999999999865431 12344544443321 122233334554
Q ss_pred HcCCCCCCCCCCCCCCceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhh
Q 012283 270 WLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLR 349 (467)
Q Consensus 270 ~Lgi~~~~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~ 349 (467)
.+|+... ...| .+.+++++...+...+. ..++++|+|+||++. ..| +||.|+|++|++.|.
T Consensus 74 ~~~~~~~----~~~~--~l~~~~~~~~~~~~~~~---~~~~~~i~i~~~a~~---------~~k-~wp~e~~~~l~~~l~ 134 (247)
T PF01075_consen 74 LLGIPYP----STKP--ELPLSEEEEAAARELLK---SKDKPYIGINPGASW---------PSK-RWPAEKWAELIERLK 134 (247)
T ss_dssp HHTS-SS----SSSS------THHHHTTHHTTTT----TTSSEEEEE---SS---------GGG-S--HHHHHHHHHHHC
T ss_pred hcCCCCC----CCCc--CCcCCHHHHHHHHHhhh---hccCCeEEEeecCCC---------ccc-cCCHHHHHHHHHHHH
Confidence 4677642 1123 56677766665554443 134689999997655 335 699999999999999
Q ss_pred hCC-CEEEecCccc--HHHHHHHHhcCCC-C---cccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCCC
Q 012283 350 EFR-PLFVIPHEKE--REGVEDVVGDDAS-I---VFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELK 422 (467)
Q Consensus 350 ~~~-~Vvl~g~~~e--~~~~~~i~~~~~~-~---~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~p 422 (467)
+++ .|+++|+++| .+.++.+.+.+.+ . ...++|.|++++|++|+++||+|||+||||+|+|+|+|+|||++++
T Consensus 135 ~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a~~~I~~Dtg~~HlA~a~~~p~v~lfg~t~~ 214 (247)
T PF01075_consen 135 ERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRADLVIGNDTGPMHLAAALGTPTVALFGPTNP 214 (247)
T ss_dssp CCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTSSEEEEESSHHHHHHHHTT--EEEEESSS-H
T ss_pred hhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcCCEEEecCChHHHHHHHHhCCEEEEecCCCH
Confidence 987 5778888877 6677777766542 2 2278999999999999999999999999999999999999999976
Q ss_pred CCccccCCCCCceEeecCCCCCCCCCCH
Q 012283 423 GRLFVPNAEEKKCTVISSRTGKLIDTPV 450 (467)
Q Consensus 423 ~~~~~P~~~~~~c~i~~~~~~cm~~Is~ 450 (467)
. .|.|+ ++.. .++..+..|......
T Consensus 215 ~-~~~P~-~~~~-~~i~~~~~c~pc~~~ 239 (247)
T PF01075_consen 215 E-RWGPY-GENH-QIIRSDLPCSPCFSK 239 (247)
T ss_dssp H-HHS-T-SSSE-EEEECGGG-G-----
T ss_pred H-HhCCC-CCCE-EEEecCCCCCCCCCC
Confidence 4 67899 6554 344435555544433
No 10
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.02 E-value=4.3e-08 Score=100.86 Aligned_cols=299 Identities=16% Similarity=0.122 Sum_probs=156.2
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCc---------hhhhhcCCCCCEEEEecCCC-CCCChH---
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG---------KQTFELNKNVRWANVYDLDD-DWPEPA--- 189 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~---------~~l~~~~p~Id~ii~~~~~~-~~~~~~--- 189 (467)
|||+++- |.==|.+...|++++|++ .++.+..+++.... .++.+..=.++.-+.+.... .-.+..
T Consensus 1 ~ki~~v~-GtRpe~iklapv~~~l~~-~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T TIGR03568 1 KKICVVT-GTRADYGLLRPLLKALQD-DPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSM 78 (365)
T ss_pred CeEEEEE-ecChhHHHHHHHHHHHhc-CCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHH
Confidence 4666553 444588999999999996 45777777765422 12222211222112222111 001222
Q ss_pred --HHHHHHHHhHhCCCcEEEEcccCCc--hHHHHHHHhCCCeeEeccCCCCCccccccccceeecCCccc------cc-c
Q 012283 190 --EYTDILGVMKNRYYDMVLSTKLAGL--GHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMN------LS-E 258 (467)
Q Consensus 190 --~~~~l~~~Lr~~~yDlvI~l~~~~~--~~~ll~~l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~------~~-~ 258 (467)
...++.+.+++.++|+|+....... -.++.++..+++.- -.....+. +.. ++..+ .+ -
T Consensus 79 ~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~-HveaG~rs-------~~~---~eE~~r~~i~~la~l 147 (365)
T TIGR03568 79 GLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIA-HIHGGEVT-------EGA---IDESIRHAITKLSHL 147 (365)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEE-EEECCccC-------CCC---chHHHHHHHHHHHhh
Confidence 2356666788889999999874210 23445677777643 11111110 100 00000 00 0
Q ss_pred c--hhhHHHHHHHHcCCCCCCCCCCCCCCceeecCHHHHHHHHHHHHHcCCC-CCcE--EEEecCCCCccccccCCCCCC
Q 012283 259 R--GYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAE-QGKY--IVIHGIESDSKASMQSRGDTD 333 (467)
Q Consensus 259 ~--~~h~~~~lL~~Lgi~~~~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~-~~~~--I~i~pgas~s~~~~~~r~~~K 333 (467)
+ ..+...+.|...|.+...+-..-.|.++--..-. ....+..+++++++ .++| |.+||+++ .+
T Consensus 148 ~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~-~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~-----------~~ 215 (365)
T TIGR03568 148 HFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLD-LLSKEELEEKLGIDLDKPYALVTFHPVTL-----------EK 215 (365)
T ss_pred ccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhh-ccCHHHHHHHhCCCCCCCEEEEEeCCCcc-----------cc
Confidence 0 0011222344455542110000011100000000 00012344556665 2477 67787432 13
Q ss_pred CCCCHHHHHHHHHHhhhCC--CEEEe--cCcccHHHHHHHHhc---CCCCcc--cCCHHHHHHHHHhcCEEEeCCchHHH
Q 012283 334 SLLPIQVWAEIANGLREFR--PLFVI--PHEKEREGVEDVVGD---DASIVF--ITTPGQLAALINDSAGVIATNTAAIQ 404 (467)
Q Consensus 334 ~rWP~e~~~~Li~~L~~~~--~Vvl~--g~~~e~~~~~~i~~~---~~~~~~--~~sL~el~alI~~a~lvIg~DTG~~H 404 (467)
.|+.++|.++++.|.+.+ .+++. +++.+....+.+.+. .+++.. .++..++.+++++|+++||+|||.+|
T Consensus 216 -~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSSggi~ 294 (365)
T TIGR03568 216 -ESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSSSGII 294 (365)
T ss_pred -cCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcChhHHH
Confidence 599999999999998765 34444 445554444444432 233332 67899999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCccccCCCCC-ceEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 012283 405 LANAREKPSIALFSSELKGRLFVPNAEEK-KCTVISSRTGKLIDTPVEAVLNAMQIFNE 462 (467)
Q Consensus 405 LAaAlg~PtVaLFg~t~p~~~~~P~~~~~-~c~i~~~~~~cm~~Is~e~V~~ai~~ll~ 462 (467)
.|+++|+|+|.+= . + |- +.. ..-++ . -.-++++|.+++.+++.
T Consensus 295 EA~~lg~Pvv~l~-~------R-~e-~~~~g~nvl----~--vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 295 EAPSFGVPTINIG-T------R-QK-GRLRADSVI----D--VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred hhhhcCCCEEeec-C------C-ch-hhhhcCeEE----E--eCCCHHHHHHHHHHHhC
Confidence 9999999999773 1 1 32 110 10011 0 14578999999888554
No 11
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.84 E-value=3.1e-07 Score=96.12 Aligned_cols=314 Identities=10% Similarity=0.053 Sum_probs=165.6
Q ss_pred cEEEEEec---CCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCC----------------------CCEEE
Q 012283 123 RRCCCIIS---GGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKN----------------------VRWAN 177 (467)
Q Consensus 123 ~rILII~~---~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~----------------------Id~ii 177 (467)
|||+|+-. +..||--+.++++.+|++..|+++|+++.......-+...+. |..++
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVL 80 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHHHH
Confidence 68888864 457999999999999999999999999998543322111211 11110
Q ss_pred E--e---------cCCC---CCCChHHHHHHHHHhHhCCCcEEEEcccCCc------hH---HHHHHHhCCCeeE-----
Q 012283 178 V--Y---------DLDD---DWPEPAEYTDILGVMKNRYYDMVLSTKLAGL------GH---AAFLFMTTARDRV----- 229 (467)
Q Consensus 178 ~--~---------~~~~---~~~~~~~~~~l~~~Lr~~~yDlvI~l~~~~~------~~---~ll~~l~gak~ri----- 229 (467)
- + ...+ ...-...+..+++.|++ .|++|+..++.+ ++ .+++.+.|.+.-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsi 158 (426)
T PRK10017 81 RRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSG--YDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSV 158 (426)
T ss_pred HhhhhHHHHHhhhccccccccccchhhHHHHHHHHHh--CCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcC
Confidence 0 0 0000 00001133355666765 899999775211 11 2235666655322
Q ss_pred eccCCCCCcccccccccee--ecCCccccccchhhHHHHHHHHcCCCCCCCCCCCCCCceeecCHHHHH-----HHHHHH
Q 012283 230 SYIYPNVNAAGAGLLLSET--FTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKE-----VVAEKY 302 (467)
Q Consensus 230 G~~~~~~~~~~~~~~~t~~--i~~~~~~~~~~~~h~~~~lL~~Lgi~~~~v~~~~~p~~~l~l~~~~~~-----~a~~~l 302 (467)
|...........++.+++. +.. ......++|+.+|+....+...+.| -+.++..... .....+
T Consensus 159 GPf~~~~~r~l~r~vl~~~~~Itv--------RD~~S~~~Lk~lGv~~~~v~~~aDp--AF~L~~~~~~~~~~~~~~~~~ 228 (426)
T PRK10017 159 GPFQDEQFNQLANYVFGHCDALIL--------RESVSLDLMKRSNITTAKVEHGVDT--AWLVDHHTEDFTASYAVQHWL 228 (426)
T ss_pred CCcCCHHHHHHHHHHHhcCCEEEE--------ccHHHHHHHHHhCCCccceEEecCh--hhhCCccccccccchhhhhhh
Confidence 2111100000111112110 111 1123336889999874322112223 2223321111 011122
Q ss_pred HHcCCCCCcEEEEecCCCCccccccCCCC--CCCCCCHHHHHHHHHHhhhCC-CEEEec--------CcccHHHHHHHHh
Q 012283 303 KNAGAEQGKYIVIHGIESDSKASMQSRGD--TDSLLPIQVWAEIANGLREFR-PLFVIP--------HEKEREGVEDVVG 371 (467)
Q Consensus 303 ~~~~l~~~~~I~i~pgas~s~~~~~~r~~--~K~rWP~e~~~~Li~~L~~~~-~Vvl~g--------~~~e~~~~~~i~~ 371 (467)
... ..+++|+|+.- + +.+..++. ....+ .+.++++++.|.+++ .|++++ +++|....+++.+
T Consensus 229 ~~~--~~~~~Vgisvr--~--~~~~~~~~~~~~~~Y-~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~ 301 (426)
T PRK10017 229 DVA--AQQKTVAITLR--E--LAPFDKRLGTTQQAY-EKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQ 301 (426)
T ss_pred ccc--ccCCEEEEEec--c--cccccccccccHHHH-HHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHH
Confidence 111 23578999851 1 00000000 00001 246778888888777 455454 3567777778877
Q ss_pred cCCCC----cc--cCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCCCCCccc-cCCCCCceEeecCCCCC
Q 012283 372 DDASI----VF--ITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFV-PNAEEKKCTVISSRTGK 444 (467)
Q Consensus 372 ~~~~~----~~--~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~p~~~~~-P~~~~~~c~i~~~~~~c 444 (467)
..... +. ..+..|+..+|++||++||.=-=.+=+|++.|+|+|+|=-.. ....+. =. +-... ...
T Consensus 302 ~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlHa~I~a~~~gvP~i~i~Y~~-K~~~~~~~l-g~~~~------~~~ 373 (426)
T PRK10017 302 HVSDPARYHVVMDELNDLEMGKILGACELTVGTRLHSAIISMNFGTPAIAINYEH-KSAGIMQQL-GLPEM------AID 373 (426)
T ss_pred hcccccceeEecCCCChHHHHHHHhhCCEEEEecchHHHHHHHcCCCEEEeeehH-HHHHHHHHc-CCccE------Eec
Confidence 76431 11 345679999999999999999888889999999999994421 111111 01 11111 123
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q 012283 445 LIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 445 m~~Is~e~V~~ai~~ll~~ 463 (467)
+.+++.+++++++++++..
T Consensus 374 ~~~l~~~~Li~~v~~~~~~ 392 (426)
T PRK10017 374 IRHLLDGSLQAMVADTLGQ 392 (426)
T ss_pred hhhCCHHHHHHHHHHHHhC
Confidence 4677888888888877653
No 12
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.27 E-value=0.00018 Score=72.88 Aligned_cols=264 Identities=15% Similarity=0.146 Sum_probs=150.4
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCC--chhhhhcCCCCCEEEEecCCCC-----CCChHHHHHHH
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASAR--GKQTFELNKNVRWANVYDLDDD-----WPEPAEYTDIL 195 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~--~~~l~~~~p~Id~ii~~~~~~~-----~~~~~~~~~l~ 195 (467)
|||+|=...- --+-+.-+++++|++. |.+|.+.++.. ..+|++.. +++.+..=..... +..+....+++
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~~--GheV~it~R~~~~~~~LL~~y-g~~y~~iG~~g~~~~~Kl~~~~~R~~~l~ 76 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEKR--GHEVLITARDKDETEELLDLY-GIDYIVIGKHGDSLYGKLLESIERQYKLL 76 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHhC--CCEEEEEEeccchHHHHHHHc-CCCeEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 4555433221 2677888999999998 78888888864 35777754 6665433222221 11123346778
Q ss_pred HHhHhCCCcEEEEcccCCchHHHHHHHhCCCeeEeccCCCCCccccc--cccceeecCCccccccchhhHHH-HHHHHcC
Q 012283 196 GVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAG--LLLSETFTAESMNLSERGYNMYE-QMVDWLG 272 (467)
Q Consensus 196 ~~Lr~~~yDlvI~l~~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~--~~~t~~i~~~~~~~~~~~~h~~~-~lL~~Lg 272 (467)
+.+++.++|++|... +......++.+|++..+=++.+. .....+ .-|.+.+-.+ ..+. ..+..+|
T Consensus 77 ~~~~~~~pDv~is~~--s~~a~~va~~lgiP~I~f~D~e~-a~~~~~Lt~Pla~~i~~P---------~~~~~~~~~~~G 144 (335)
T PF04007_consen 77 KLIKKFKPDVAISFG--SPEAARVAFGLGIPSIVFNDTEH-AIAQNRLTLPLADVIITP---------EAIPKEFLKRFG 144 (335)
T ss_pred HHHHhhCCCEEEecC--cHHHHHHHHHhCCCeEEEecCch-hhccceeehhcCCeeECC---------cccCHHHHHhcC
Confidence 888889999999866 45566678999999654444221 110000 0111111111 1111 2344455
Q ss_pred CCCCCCCCCCCCCc--eeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhh
Q 012283 273 RPFRSVPRHPVPPL--RVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLRE 350 (467)
Q Consensus 273 i~~~~v~~~~~p~~--~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~ 350 (467)
.. +.+- ..+.+ -.++.+ ...-.+.++++|++..+||++-+.+..+.|- .+..+-..++++.|.+
T Consensus 145 ~~-~~i~--~y~G~~E~ayl~~--F~Pd~~vl~~lg~~~~~yIvvR~~~~~A~y~---------~~~~~i~~~ii~~L~~ 210 (335)
T PF04007_consen 145 AK-NQIR--TYNGYKELAYLHP--FKPDPEVLKELGLDDEPYIVVRPEAWKASYD---------NGKKSILPEIIEELEK 210 (335)
T ss_pred Cc-CCEE--EECCeeeEEeecC--CCCChhHHHHcCCCCCCEEEEEeccccCeee---------cCccchHHHHHHHHHh
Confidence 44 1110 01111 111111 1111456778887778999999866554421 2334456789999998
Q ss_pred CCC-EEEecCcccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCC
Q 012283 351 FRP-LFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSE 420 (467)
Q Consensus 351 ~~~-Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t 420 (467)
.+. ||+++...+... +.+..+ +.+....-+...|+..|+++||.=.-..-=||.+|||+|..|...
T Consensus 211 ~~~~vV~ipr~~~~~~---~~~~~~-~~i~~~~vd~~~Ll~~a~l~Ig~ggTMa~EAA~LGtPaIs~~~g~ 277 (335)
T PF04007_consen 211 YGRNVVIIPRYEDQRE---LFEKYG-VIIPPEPVDGLDLLYYADLVIGGGGTMAREAALLGTPAISCFPGK 277 (335)
T ss_pred hCceEEEecCCcchhh---HHhccC-ccccCCCCCHHHHHHhcCEEEeCCcHHHHHHHHhCCCEEEecCCc
Confidence 884 667765554422 222233 222212224558999999999976666677999999999998544
No 13
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.24 E-value=1.3e-05 Score=82.44 Aligned_cols=271 Identities=13% Similarity=0.054 Sum_probs=133.9
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchh-hhhcCCCCCEEEEecCCCCC---CC----hHHHHH
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQ-TFELNKNVRWANVYDLDDDW---PE----PAEYTD 193 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~-l~~~~p~Id~ii~~~~~~~~---~~----~~~~~~ 193 (467)
.|||+|..-+--||+..+. +.++|++.+|+.++..+..+.... .++. .++ ...++....+ +. +....+
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~l~~~g~~~~~~~~~~~~~~~~~ 76 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCES--LFD-MEELAVMGLVEVLPRLPRLLKIRRR 76 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCcc--ccC-HHHhhhccHHHHHHHHHHHHHHHHH
Confidence 4799999999999999997 999999988888888776643221 1111 111 1111111101 11 233456
Q ss_pred HHHHhHhCCCcEEEEcccCCc--hHHHHHHHhCCCeeEeccCCCCCccccccc---cceeecCCccccccchhhHHHHHH
Q 012283 194 ILGVMKNRYYDMVLSTKLAGL--GHAAFLFMTTARDRVSYIYPNVNAAGAGLL---LSETFTAESMNLSERGYNMYEQMV 268 (467)
Q Consensus 194 l~~~Lr~~~yDlvI~l~~~~~--~~~ll~~l~gak~riG~~~~~~~~~~~~~~---~t~~i~~~~~~~~~~~~h~~~~lL 268 (467)
+.+.|++.++|+|+.....+. +.+..++..|++..+ +..+. .|.+. .+........-. .......+.+
T Consensus 77 ~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~-~~~~~----~~~~~~~~~~~~~~~~d~i~--~~~~~~~~~~ 149 (380)
T PRK00025 77 LKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIH-YVSPS----VWAWRQGRAFKIAKATDHVL--ALFPFEAAFY 149 (380)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEE-EeCCc----hhhcCchHHHHHHHHHhhhe--eCCccCHHHH
Confidence 667788899999998653222 223334556666332 11110 00000 000000000000 0000011233
Q ss_pred HHcCCCCCCCCCCCCCCceeecCHHHHHHHHHHHHHcCCCC-CcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHH
Q 012283 269 DWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQ-GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANG 347 (467)
Q Consensus 269 ~~Lgi~~~~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~-~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~ 347 (467)
...|.+.. ....|.........+. ....++++++. +++|++.+|+-++. .+ +..+.+.+.++.
T Consensus 150 ~~~g~~~~---~~G~p~~~~~~~~~~~---~~~~~~l~~~~~~~~il~~~gsr~~~--------~~--~~~~~l~~a~~~ 213 (380)
T PRK00025 150 DKLGVPVT---FVGHPLADAIPLLPDR---AAARARLGLDPDARVLALLPGSRGQE--------IK--RLLPPFLKAAQL 213 (380)
T ss_pred HhcCCCeE---EECcCHHHhcccccCh---HHHHHHcCCCCCCCEEEEECCCCHHH--------HH--HHHHHHHHHHHH
Confidence 33443211 0001100000000011 12334556543 35667776432211 11 335566677777
Q ss_pred hhhCC---CEEEecC-cccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCCchHHHH-HHhcCCCEEEEeCCC
Q 012283 348 LREFR---PLFVIPH-EKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQL-ANAREKPSIALFSSE 420 (467)
Q Consensus 348 L~~~~---~Vvl~g~-~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~DTG~~HL-AaAlg~PtVaLFg~t 420 (467)
|.++. .+++.++ +.+++.+++.............-.++..+++.||++|+. ||.+-+ |.++|+|+|+.|...
T Consensus 214 l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~aDl~v~~-sG~~~lEa~a~G~PvI~~~~~~ 290 (380)
T PRK00025 214 LQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLDGQKREAMAAADAALAA-SGTVTLELALLKVPMVVGYKVS 290 (380)
T ss_pred HHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEcccHHHHHHhCCEEEEC-ccHHHHHHHHhCCCEEEEEccC
Confidence 76543 2455544 555555555544331111111125789999999999994 566664 789999999999753
No 14
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.01 E-value=0.0016 Score=64.58 Aligned_cols=244 Identities=13% Similarity=0.144 Sum_probs=128.8
Q ss_pred CchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhh---hhcCCCCCEEEEecCCCCCCChHHHHHHHHHhHhCCCcEEEE
Q 012283 132 GVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQT---FELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLS 208 (467)
Q Consensus 132 ~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l---~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~~~yDlvI~ 208 (467)
|+|-+.-+.-+.++|+++ +.++.++|+.....+ ++...+ .|+.++....| ..+...+...|++.+.|++|.
T Consensus 13 G~GHv~Rcl~LA~~l~~~--g~~v~f~~~~~~~~~~~~i~~~g~--~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~vV~ 86 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQ--GAEVAFACKPLPGDLIDLLLSAGF--PVYELPDESSR--YDDALELINLLEEEKFDILIV 86 (279)
T ss_pred cccHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHcCC--eEEEecCCCch--hhhHHHHHHHHHhcCCCEEEE
Confidence 789999999999999876 789999999865543 333333 35555533221 123445667777778999988
Q ss_pred cccCCchHHHHHHHh-CCCeeEeccCCCCCccccccccceeecCCccccccchhhHHHHHHH-----HcCCCCCCCCCCC
Q 012283 209 TKLAGLGHAAFLFMT-TARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVD-----WLGRPFRSVPRHP 282 (467)
Q Consensus 209 l~~~~~~~~ll~~l~-gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~~lL~-----~Lgi~~~~v~~~~ 282 (467)
-+. .....+...+- ..+..+-++...........+++..... ....|..+.. .+|...
T Consensus 87 D~y-~~~~~~~~~~k~~~~~l~~iDD~~~~~~~~D~vin~~~~~--------~~~~y~~~~~~~~~~l~G~~Y------- 150 (279)
T TIGR03590 87 DHY-GLDADWEKLIKEFGRKILVIDDLADRPHDCDLLLDQNLGA--------DASDYQGLVPANCRLLLGPSY------- 150 (279)
T ss_pred cCC-CCCHHHHHHHHHhCCeEEEEecCCCCCcCCCEEEeCCCCc--------CHhHhcccCcCCCeEEecchH-------
Confidence 775 34444443332 2222233331111110011112211100 0111211100 122211
Q ss_pred CCCceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhC--C-C-EEEec
Q 012283 283 VPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREF--R-P-LFVIP 358 (467)
Q Consensus 283 ~p~~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~--~-~-Vvl~g 358 (467)
.| +.+ ++....-....-+..+.|++..|+++.. ... ..+++.|.+. . . .++.|
T Consensus 151 ~~-----lr~---eF~~~~~~~~~~~~~~~iLi~~GG~d~~-----------~~~----~~~l~~l~~~~~~~~i~vv~G 207 (279)
T TIGR03590 151 AL-----LRE---EFYQLATANKRRKPLRRVLVSFGGADPD-----------NLT----LKLLSALAESQINISITLVTG 207 (279)
T ss_pred Hh-----hhH---HHHHhhHhhhcccccCeEEEEeCCcCCc-----------CHH----HHHHHHHhccccCceEEEEEC
Confidence 01 111 1111110011001124566766655532 121 2344444332 2 2 23333
Q ss_pred -CcccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCC
Q 012283 359 -HEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSE 420 (467)
Q Consensus 359 -~~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t 420 (467)
+....+.++++.+..+++.......++..+++.||++||.=.+.+.=|+++|+|+|++--..
T Consensus 208 ~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~~G~T~~E~~a~g~P~i~i~~~~ 270 (279)
T TIGR03590 208 SSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGAAGSTSWERCCLGLPSLAICLAE 270 (279)
T ss_pred CCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEECCchHHHHHHHcCCCEEEEEecc
Confidence 33445566666655555555567799999999999999998899999999999999885543
No 15
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.60 E-value=0.01 Score=59.32 Aligned_cols=285 Identities=13% Similarity=0.068 Sum_probs=141.5
Q ss_pred cEEEEEecC-CchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEe---cCCCCCCC---h-------
Q 012283 123 RRCCCIISG-GVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY---DLDDDWPE---P------- 188 (467)
Q Consensus 123 ~rILII~~~-~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~---~~~~~~~~---~------- 188 (467)
||||+...+ |+|-+.-+.++.++|| +.+|++++......+++..=.+.++..+ ........ .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~Lr----g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARALR----GHEVTFITSGPAPEFLKPRFPVREIPGLGPIQENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHc----cCceEEEEcCCcHHHhccccCEEEccCceEeccCCccchHHHHHHHHHhh
Confidence 799999876 9999999999999993 4789999998777777532111111111 11111110 0
Q ss_pred ----HHHHHHHHHhHhCCCcEEEEcccCCchHHHHHHHhCCCeeEeccCCCCCccccccccceeecCCccccccchhhHH
Q 012283 189 ----AEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMY 264 (467)
Q Consensus 189 ----~~~~~l~~~Lr~~~yDlvI~l~~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~ 264 (467)
....++++.+++.++|+||.-.. .-....++..|++. ++..... +...++..+.... ......
T Consensus 77 ~~~~~~~~~~~~~l~~~~pDlVIsD~~--~~~~~aa~~~giP~-i~i~~~~-----~~~~~~~~~~~~~-----~~~~~~ 143 (318)
T PF13528_consen 77 ARLARRIRREIRWLREFRPDLVISDFY--PLAALAARRAGIPV-IVISNQY-----WFLHPNFWLPWDQ-----DFGRLI 143 (318)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcCh--HHHHHHHHhcCCCE-EEEEehH-----HcccccCCcchhh-----hHHHHH
Confidence 12234455678889999998653 34555677788874 4443111 0000111111111 011222
Q ss_pred HHHHHHc---------CCCCCCCCCCCCCCceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCC
Q 012283 265 EQMVDWL---------GRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSL 335 (467)
Q Consensus 265 ~~lL~~L---------gi~~~~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~r 335 (467)
+++.... +.... .+. .+..+..+.... +.....+..-..+++|++.-|+++
T Consensus 144 ~~~~~~~~~~~~~~~l~~~~~-~~~--~~~~~~~~~~p~---~~~~~~~~~~~~~~~iLv~~gg~~-------------- 203 (318)
T PF13528_consen 144 ERYIDRYHFPPADRRLALSFY-PPL--PPFFRVPFVGPI---IRPEIRELPPEDEPKILVYFGGGG-------------- 203 (318)
T ss_pred HHhhhhccCCcccceecCCcc-ccc--cccccccccCch---hcccccccCCCCCCEEEEEeCCCc--------------
Confidence 2222211 11110 000 000000000000 000001111112466776654332
Q ss_pred CCHHHHHHHHHHhhhCC--CEEEecCcccHHHHHHHHhcCCCCcc-cCCHHHHHHHHHhcCEEEeCCchH-HHHHHhcCC
Q 012283 336 LPIQVWAEIANGLREFR--PLFVIPHEKEREGVEDVVGDDASIVF-ITTPGQLAALINDSAGVIATNTAA-IQLANAREK 411 (467)
Q Consensus 336 WP~e~~~~Li~~L~~~~--~Vvl~g~~~e~~~~~~i~~~~~~~~~-~~sL~el~alI~~a~lvIg~DTG~-~HLAaAlg~ 411 (467)
. . ++++.+.+.. .++++|...+.. ..+++.+ ..+-.++..+++.||++||.=.-. +.=|.++|+
T Consensus 204 ~--~---~~~~~l~~~~~~~~~v~g~~~~~~-------~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~ 271 (318)
T PF13528_consen 204 P--G---DLIEALKALPDYQFIVFGPNAADP-------RPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGK 271 (318)
T ss_pred H--H---HHHHHHHhCCCCeEEEEcCCcccc-------cCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCC
Confidence 1 1 4444444332 244444432111 1334433 334578899999999999996665 788999999
Q ss_pred CEEEEeCCCCCCCccccCC-CCCceEeecCCCCCCCCCCHHHHHHHHHHH
Q 012283 412 PSIALFSSELKGRLFVPNA-EEKKCTVISSRTGKLIDTPVEAVLNAMQIF 460 (467)
Q Consensus 412 PtVaLFg~t~p~~~~~P~~-~~~~c~i~~~~~~cm~~Is~e~V~~ai~~l 460 (467)
|+|.+--+......+.-.. .+.++-+ .-..++++++.+.++++++
T Consensus 272 P~l~ip~~~~~EQ~~~a~~l~~~G~~~----~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 272 PALVIPRPGQDEQEYNARKLEELGLGI----VLSQEDLTPERLAEFLERL 317 (318)
T ss_pred CEEEEeCCCCchHHHHHHHHHHCCCeE----EcccccCCHHHHHHHHhcC
Confidence 9999987653332221000 0011111 1124688899888887753
No 16
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=97.57 E-value=0.0048 Score=61.50 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhC-C-CEEEecC--cccHHHHHHHHhcCCC---CcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCC
Q 012283 339 QVWAEIANGLREF-R-PLFVIPH--EKEREGVEDVVGDDAS---IVFITTPGQLAALINDSAGVIATNTAAIQLANAREK 411 (467)
Q Consensus 339 e~~~~Li~~L~~~-~-~Vvl~g~--~~e~~~~~~i~~~~~~---~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~ 411 (467)
+.+++.++.+.++ + .|++++. +.|.+..+++...+.+ +....++.|+.+++++|+++||.===.+=+|...|+
T Consensus 191 ~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH~~I~A~~~gv 270 (298)
T TIGR03609 191 LRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLHALILAAAAGV 270 (298)
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechHHHHHHHHcCC
Confidence 4566666777665 5 3555543 5777888888776543 112568999999999999999987656668889999
Q ss_pred CEEEE
Q 012283 412 PSIAL 416 (467)
Q Consensus 412 PtVaL 416 (467)
|+|+|
T Consensus 271 P~i~i 275 (298)
T TIGR03609 271 PFVAL 275 (298)
T ss_pred CEEEe
Confidence 99999
No 17
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=97.54 E-value=0.025 Score=57.84 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHH
Q 012283 380 TTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQI 459 (467)
Q Consensus 380 ~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ 459 (467)
..-.++..+++.|+++|++-+|..-=|.++|+|+|++...+....... . + .. .++ .-+++++.+++++
T Consensus 263 ~~~~~~~~~l~~ad~vv~~Sg~~~~EA~a~g~PvI~~~~~~~~~e~~~-~-g-~~-~lv--------~~d~~~i~~ai~~ 330 (365)
T TIGR00236 263 LEYLDFLNLAANSHLILTDSGGVQEEAPSLGKPVLVLRDTTERPETVE-A-G-TN-KLV--------GTDKENITKAAKR 330 (365)
T ss_pred CChHHHHHHHHhCCEEEECChhHHHHHHHcCCCEEECCCCCCChHHHh-c-C-ce-EEe--------CCCHHHHHHHHHH
Confidence 455688999999999999655655559999999999864332111111 0 1 11 111 1268899999988
Q ss_pred HHHh
Q 012283 460 FNES 463 (467)
Q Consensus 460 ll~~ 463 (467)
++..
T Consensus 331 ll~~ 334 (365)
T TIGR00236 331 LLTD 334 (365)
T ss_pred HHhC
Confidence 8754
No 18
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=97.53 E-value=0.013 Score=61.35 Aligned_cols=98 Identities=17% Similarity=0.123 Sum_probs=62.3
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcC-Cchhhhhc-CC-CCCEEEEecCCCCCCChHHHHHHHHHhH
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA-RGKQTFEL-NK-NVRWANVYDLDDDWPEPAEYTDILGVMK 199 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~-~~~~l~~~-~p-~Id~ii~~~~~~~~~~~~~~~~l~~~Lr 199 (467)
.+.+-++...+|++....|+++.|++++|+.+|.+.+.. ...++++. .+ .+. +..++.+. . ..+.+.|+
T Consensus 50 ~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~-~~~~P~d~----~---~~~~~~l~ 121 (425)
T PRK05749 50 GPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVE-HRYLPYDL----P---GAVRRFLR 121 (425)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCce-EEEecCCc----H---HHHHHHHH
Confidence 456778889999999999999999999999988666543 33455542 23 343 44555432 1 23344467
Q ss_pred hCCCcEEEEcccCCchHHHH--HHHhCCCeeE
Q 012283 200 NRYYDMVLSTKLAGLGHAAF--LFMTTARDRV 229 (467)
Q Consensus 200 ~~~yDlvI~l~~~~~~~~ll--~~l~gak~ri 229 (467)
+.++|+++.... .....++ +...|++..+
T Consensus 122 ~~~Pd~v~~~~~-~~~~~~l~~~~~~~ip~vl 152 (425)
T PRK05749 122 FWRPKLVIIMET-ELWPNLIAELKRRGIPLVL 152 (425)
T ss_pred hhCCCEEEEEec-chhHHHHHHHHHCCCCEEE
Confidence 778999987653 2222222 3445666444
No 19
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.45 E-value=0.01 Score=60.26 Aligned_cols=300 Identities=15% Similarity=0.070 Sum_probs=137.0
Q ss_pred ecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCc-hh-----hhhc--CCCCCEEEEecCCCC---CCChHHHHHHHHH
Q 012283 129 ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG-KQ-----TFEL--NKNVRWANVYDLDDD---WPEPAEYTDILGV 197 (467)
Q Consensus 129 ~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~-~~-----l~~~--~p~Id~ii~~~~~~~---~~~~~~~~~l~~~ 197 (467)
.+|.=-|.+...|++++|++. |+.++.+++.... .+ +.+. ....+.-........ -.......++.+.
T Consensus 5 ~~gtr~~~~~~~pl~~~l~~~-~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 83 (363)
T cd03786 5 VTGTRPEYIKLAPLIRALKKD-PGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAV 83 (363)
T ss_pred EEecCHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 345556889999999999976 7889987766432 11 2221 111221112221110 0112234566777
Q ss_pred hHhCCCcEEEEcccCCch----HHHHHHHhCCCeeEeccCCCCC---ccccccccceeecCCccccccchhhHHHHHHHH
Q 012283 198 MKNRYYDMVLSTKLAGLG----HAAFLFMTTARDRVSYIYPNVN---AAGAGLLLSETFTAESMNLSERGYNMYEQMVDW 270 (467)
Q Consensus 198 Lr~~~yDlvI~l~~~~~~----~~ll~~l~gak~riG~~~~~~~---~~~~~~~~t~~i~~~~~~~~~~~~h~~~~lL~~ 270 (467)
+++.++|+|+.... .. ..+.++..|++... .....+. ...+. ...+.+....+. .-...+...+.+..
T Consensus 84 l~~~~pDvV~~~g~--~~~~~~~~~aa~~~~iPvv~-~~~g~~s~~~~~~~~-~~r~~~~~~ad~-~~~~s~~~~~~l~~ 158 (363)
T cd03786 84 LLEEKPDLVLVLGD--TNETLAAALAAFKLGIPVAH-VEAGLRSFDRGMPDE-ENRHAIDKLSDL-HFAPTEEARRNLLQ 158 (363)
T ss_pred HHHhCCCEEEEeCC--chHHHHHHHHHHHcCCCEEE-EecccccCCCCCCch-HHHHHHHHHhhh-ccCCCHHHHHHHHH
Confidence 88889999887642 22 22345666776432 1111000 00000 000000000000 00001122234555
Q ss_pred cCCCCCCCCCCCCCCcee-ecCHHH-HHHH------HHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHH
Q 012283 271 LGRPFRSVPRHPVPPLRV-SISRRL-KEVV------AEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWA 342 (467)
Q Consensus 271 Lgi~~~~v~~~~~p~~~l-~l~~~~-~~~a------~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~ 342 (467)
.|++... +.+ ..+-.+ .... ....+..++++++++++..+.-... ... -..+.+.
T Consensus 159 ~G~~~~k--------I~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~------~~~---k~~~~l~ 221 (363)
T cd03786 159 EGEPPER--------IFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENV------DDG---EQLEEIL 221 (363)
T ss_pred cCCCccc--------EEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCcccc------CCh---HHHHHHH
Confidence 6765321 111 111111 1100 0011234555567776653211100 001 1133444
Q ss_pred HHHHHhhhCCC-EEEecCcccHHHHHHHHhcC----CCCcc--cCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEE
Q 012283 343 EIANGLREFRP-LFVIPHEKEREGVEDVVGDD----ASIVF--ITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIA 415 (467)
Q Consensus 343 ~Li~~L~~~~~-Vvl~g~~~e~~~~~~i~~~~----~~~~~--~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVa 415 (467)
+.++.+.+... +++.+++..++.+++..... .++.+ ...-.++..+++.||++|++-+|..--|++.|+|+|+
T Consensus 222 ~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sggi~~Ea~~~g~PvI~ 301 (363)
T cd03786 222 EALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSGGIQEEASFLGVPVLN 301 (363)
T ss_pred HHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCccHHhhhhhcCCCEEe
Confidence 44444433333 44444555455555544332 23322 2345789999999999998877665455567899999
Q ss_pred EeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 416 LFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 416 LFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
+-..+ .+ +...+..+.+ .-.=+++++.+++.+++..
T Consensus 302 ~~~~~----~~-~~~~~~g~~~-------~~~~~~~~i~~~i~~ll~~ 337 (363)
T cd03786 302 LRDRT----ER-PETVESGTNV-------LVGTDPEAILAAIEKLLSD 337 (363)
T ss_pred eCCCC----cc-chhhheeeEE-------ecCCCHHHHHHHHHHHhcC
Confidence 63221 11 2211112111 1111488999999888764
No 20
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.41 E-value=0.0084 Score=58.48 Aligned_cols=243 Identities=13% Similarity=0.105 Sum_probs=130.0
Q ss_pred cEEEEEecC----CchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHh
Q 012283 123 RRCCCIISG----GVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVM 198 (467)
Q Consensus 123 ~rILII~~~----~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~L 198 (467)
|||+|+.-+ |+|-+..+.-+.++|++. +..+.+++.+...++... +-+++....-.. -..+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~--~~~~~fl~k~~~e~~~~~---~~~~f~~~~~~~----------~n~i 65 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKR--GFACLFLTKQDIEAIIHK---VYEGFKVLEGRG----------NNLI 65 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhc--CceEEEecccchhhhhhh---hhhhccceeeec----------cccc
Confidence 688888754 789999999999999998 489999999886663332 211211111110 1156
Q ss_pred HhCCCcEEEEcccCCchHHHHHH---HhCCCeeEeccCCCCCccccccccceeecCCccccccchhhHHHHHHHHcCCCC
Q 012283 199 KNRYYDMVLSTKLAGLGHAAFLF---MTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPF 275 (467)
Q Consensus 199 r~~~yDlvI~l~~~~~~~~ll~~---l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~~lL~~Lgi~~ 275 (467)
+.++||++|.-+. +.....+-. =++.+ .+-|+...... +.+...... .+..-.+..|...
T Consensus 66 k~~k~d~lI~Dsy-gl~~dd~k~ik~e~~~k-~l~fDd~~~~~-----~~d~d~ivN----------~~~~a~~~y~~v~ 128 (318)
T COG3980 66 KEEKFDLLIFDSY-GLNADDFKLIKEEAGSK-ILIFDDENAKS-----FKDNDLIVN----------AILNANDYYGLVP 128 (318)
T ss_pred ccccCCEEEEecc-CCCHHHHHHHHHHhCCc-EEEecCCCccc-----hhhhHhhhh----------hhhcchhhccccC
Confidence 7789999876554 344433322 23433 23344222111 111101000 0000011111110
Q ss_pred CCCCCCCCCCceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-C-
Q 012283 276 RSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-P- 353 (467)
Q Consensus 276 ~~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~- 353 (467)
.....-.-|. ...+-++-.+..+..+.+ +.+-|+|.-|+++.. .. --+++..|.+.. .
T Consensus 129 ~k~~~~lGp~-y~~lr~eF~~~r~~~~~r----~~r~ilI~lGGsDpk-----------~l----t~kvl~~L~~~~~nl 188 (318)
T COG3980 129 NKTRYYLGPG-YAPLRPEFYALREENTER----PKRDILITLGGSDPK-----------NL----TLKVLAELEQKNVNL 188 (318)
T ss_pred cceEEEecCC-ceeccHHHHHhHHHHhhc----chheEEEEccCCChh-----------hh----HHHHHHHhhccCeeE
Confidence 0000000010 011222222222222221 134488887666532 23 235666666654 2
Q ss_pred -EEEecCcccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEe
Q 012283 354 -LFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALF 417 (467)
Q Consensus 354 -Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLF 417 (467)
|++..+...........+..+++..--.-.+++.|++.||+.|+.=+..+.=|+.+|+|.++|-
T Consensus 189 ~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~aI~AaGstlyEa~~lgvP~l~l~ 253 (318)
T COG3980 189 HIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADLAISAAGSTLYEALLLGVPSLVLP 253 (318)
T ss_pred EEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHHHhcchheeccchHHHHHHHhcCCceEEe
Confidence 4555445556666666777777665445578999999999999999999999999999954443
No 21
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=97.39 E-value=0.016 Score=60.32 Aligned_cols=303 Identities=10% Similarity=-0.005 Sum_probs=149.0
Q ss_pred ecCCchhHHhHHHHHHHHHHHCCCcEEE---EEEcCCchhhhhcCCCCCEEEEecCCCCC-CCh------------HHHH
Q 012283 129 ISGGVYENLLFFPAIQLLKDRYPGVLID---VIASARGKQTFELNKNVRWANVYDLDDDW-PEP------------AEYT 192 (467)
Q Consensus 129 ~~~~IGD~Il~tP~l~aLk~~yP~a~I~---ll~~~~~~~l~~~~p~Id~ii~~~~~~~~-~~~------------~~~~ 192 (467)
..+|-|.=++...++++|++.+|+++|. ++...+..+ -+..|.+..+..++..... .++ ...+
T Consensus 3 ~snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e-~~~ip~~g~~~~~~sgg~~~~~~~~~~~~~~~gl~~~~~ 81 (396)
T TIGR03492 3 LSNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ-NLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGLTL 81 (396)
T ss_pred CCCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh-hCCCceeCCCCCCCCCCccCCCHHHHHHHHHhhHHHHHH
Confidence 4578899999999999999999999999 998876543 2223332233334433210 111 1122
Q ss_pred HHHHHhHhC--CCcEEEEcccCCchHHHHHHHhCCCeeE-eccCCCCC---cccc--ccccceeecCC------------
Q 012283 193 DILGVMKNR--YYDMVLSTKLAGLGHAAFLFMTTARDRV-SYIYPNVN---AAGA--GLLLSETFTAE------------ 252 (467)
Q Consensus 193 ~l~~~Lr~~--~yDlvI~l~~~~~~~~ll~~l~gak~ri-G~~~~~~~---~~~~--~~~~t~~i~~~------------ 252 (467)
+-++.+++. +.|+|+-+. ++-..+.++++|.+.-+ |-...+.. ..++ ..+| +.++-.
T Consensus 82 ~~~~~~~~~~~~p~~v~~~G--g~v~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~-~~~~G~~~~p~e~n~l~~ 158 (396)
T TIGR03492 82 GQWRALRKWAKKGDLIVAVG--DIVPLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEY-HRLEGSLYLPWERWLMRS 158 (396)
T ss_pred HHHHHHHHHhhcCCEEEEEC--cHHHHHHHHHcCCCceEEEeeccceeecCCCCCccchhh-hccCCCccCHHHHHHhhc
Confidence 334456666 899999988 45556668999988765 11110100 0000 0000 000000
Q ss_pred -ccccccchhhHHHHHHHHcCCCCCCCCCCCCCCceeecCHHHHHHHHHHHHHcCCC-CCcEEEEecCCCCccccccCCC
Q 012283 253 -SMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRG 330 (467)
Q Consensus 253 -~~~~~~~~~h~~~~lL~~Lgi~~~~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~-~~~~I~i~pgas~s~~~~~~r~ 330 (467)
.....-.....-.+.+..-|+...- .-.|-.+- +.... . .++. ..+.|++-||+-++.
T Consensus 159 ~~a~~v~~~~~~t~~~l~~~g~k~~~---vGnPv~d~-l~~~~-----~----~~l~~~~~~lllLpGSR~ae------- 218 (396)
T TIGR03492 159 RRCLAVFVRDRLTARDLRRQGVRASY---LGNPMMDG-LEPPE-----R----KPLLTGRFRIALLPGSRPPE------- 218 (396)
T ss_pred hhhCEEeCCCHHHHHHHHHCCCeEEE---eCcCHHhc-Ccccc-----c----cccCCCCCEEEEECCCCHHH-------
Confidence 0000000001111233333332110 00121110 00000 0 0222 246788888655432
Q ss_pred CCCCCCCHHHHHHHHHHhhhC-C-C-EEEecCcccHHHHHHHHhcCC-----------------CCcccCCHHHHHHHHH
Q 012283 331 DTDSLLPIQVWAEIANGLREF-R-P-LFVIPHEKEREGVEDVVGDDA-----------------SIVFITTPGQLAALIN 390 (467)
Q Consensus 331 ~~K~rWP~e~~~~Li~~L~~~-~-~-Vvl~g~~~e~~~~~~i~~~~~-----------------~~~~~~sL~el~alI~ 390 (467)
..+ . ...+.+.++.|.++ . . ++...+..+.+.+++...... ++.+.....++..+++
T Consensus 219 ~~~-~--lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 295 (396)
T TIGR03492 219 AYR-N--LKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILH 295 (396)
T ss_pred HHc-c--HHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHH
Confidence 111 2 34677777777643 2 2 334434444444444332111 0111234468999999
Q ss_pred hcCEEEeCCchHHHH-HHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 391 DSAGVIATNTAAIQL-ANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 391 ~a~lvIg~DTG~~HL-AaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
.||++|+- ||.+-. ++++|+|+|.++++.+.. .+ -. .+....+ .+....+.+-+++.+.+++.++++.
T Consensus 296 ~ADlvI~r-SGt~T~E~a~lg~P~Ilip~~~~q~-na-~~-~~~~~~l-~g~~~~l~~~~~~~l~~~l~~ll~d 364 (396)
T TIGR03492 296 WADLGIAM-AGTATEQAVGLGKPVIQLPGKGPQF-TY-GF-AEAQSRL-LGGSVFLASKNPEQAAQVVRQLLAD 364 (396)
T ss_pred hCCEEEEC-cCHHHHHHHHhCCCEEEEeCCCCHH-HH-HH-HHhhHhh-cCCEEecCCCCHHHHHHHHHHHHcC
Confidence 99999998 555556 888999999999764321 11 00 1110000 0111122344568888888877653
No 22
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.27 E-value=0.064 Score=52.91 Aligned_cols=273 Identities=11% Similarity=0.064 Sum_probs=129.2
Q ss_pred EEEEEecC--CchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhc--CCCCCEEEEecCCCCCCChHHHHHHHHHhH
Q 012283 124 RCCCIISG--GVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL--NKNVRWANVYDLDDDWPEPAEYTDILGVMK 199 (467)
Q Consensus 124 rILII~~~--~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~--~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr 199 (467)
|||++... .=|.......++++|.+. +.++.+++.......... ..+|. ++.+.....+..+....++.+.++
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~i~-v~~~~~~~~~~~~~~~~~~~~~~~ 77 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRD--RFEHVVISLTDRGELGEELEEAGVP-VYCLGKRPGRPDPGALLRLYKLIR 77 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhc--cceEEEEecCcchhhhHHHHhcCCe-EEEEecccccccHHHHHHHHHHHH
Confidence 46666542 345777778889999764 567787776544333222 23554 555554433345566677888888
Q ss_pred hCCCcEEEEcccCC-chHHHHHHH-hCCCeeEeccCCCCCcc-cccc---ccceeecCCccccccchhhHHHHHHHHcCC
Q 012283 200 NRYYDMVLSTKLAG-LGHAAFLFM-TTARDRVSYIYPNVNAA-GAGL---LLSETFTAESMNLSERGYNMYEQMVDWLGR 273 (467)
Q Consensus 200 ~~~yDlvI~l~~~~-~~~~ll~~l-~gak~riG~~~~~~~~~-~~~~---~~t~~i~~~~~~~~~~~~h~~~~lL~~Lgi 273 (467)
+.++|+++...... ....+..+. .+.+............. .... .+...+...... .-...+...+.+...|+
T Consensus 78 ~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~s~~~~~~~~~~~~ 156 (365)
T cd03807 78 RLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPL-IVANSAAAAEYHQAIGY 156 (365)
T ss_pred hhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCe-EEeccHHHHHHHHHcCC
Confidence 89999998765321 122233333 23332222111000000 0000 000000000000 00011112223333344
Q ss_pred CCCCCCCCCCCC-ceee-cCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhC
Q 012283 274 PFRSVPRHPVPP-LRVS-ISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREF 351 (467)
Q Consensus 274 ~~~~v~~~~~p~-~~l~-l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~ 351 (467)
....+ ...|. +... +... ........++.+++.++.+++..|.-. ..|. .+.+.+.++.|.++
T Consensus 157 ~~~~~--~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~G~~~---------~~K~---~~~li~a~~~l~~~ 221 (365)
T cd03807 157 PPKKI--VVIPNGVDTERFSPD-LDARARLREELGLPEDTFLIGIVARLH---------PQKD---HATLLRAAALLLKK 221 (365)
T ss_pred Chhhe--eEeCCCcCHHhcCCc-ccchHHHHHhcCCCCCCeEEEEecccc---------hhcC---HHHHHHHHHHHHHh
Confidence 32110 00110 0000 0000 011112223455554555555542211 2232 46677777777654
Q ss_pred C---CEEEecCcccHHHHHHHHh-cCC---CCcccCCHHHHHHHHHhcCEEEeCCc-----hHHHHHHhcCCCEEE
Q 012283 352 R---PLFVIPHEKEREGVEDVVG-DDA---SIVFITTPGQLAALINDSAGVIATNT-----AAIQLANAREKPSIA 415 (467)
Q Consensus 352 ~---~Vvl~g~~~e~~~~~~i~~-~~~---~~~~~~sL~el~alI~~a~lvIg~DT-----G~~HLAaAlg~PtVa 415 (467)
. .+++.|...+....+.... ... ++.......++..+++.||++|.+-. ..+.=|.++|+|+|+
T Consensus 222 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~ 297 (365)
T cd03807 222 FPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVA 297 (365)
T ss_pred CCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEE
Confidence 3 3556665555555544443 221 12222345789999999999997654 478899999999998
No 23
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.22 E-value=0.078 Score=54.45 Aligned_cols=305 Identities=12% Similarity=0.036 Sum_probs=152.2
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchh-hhhcCCCCCEEEEecCCC-----CCC-------ChH
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQ-TFELNKNVRWANVYDLDD-----DWP-------EPA 189 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~-l~~~~p~Id~ii~~~~~~-----~~~-------~~~ 189 (467)
|+|++.-.+.=|-+--...+.++|+++-.+ ++.++......+ .+.....+ +++.++... .+. -+.
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~-~v~~~~~~~~~e~~l~~~~~~-~~~~I~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWE-QVIVLGTGDGLEAFLVKQYGI-EFELIPSGGLRRKGSLKLLKAPFKLLK 78 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCcc-EEEEecccccceeeeccccCc-eEEEEecccccccCcHHHHHHHHHHHH
Confidence 466777777889999999999999999666 888885544332 22222233 455555433 111 112
Q ss_pred HHHHHHHHhHhCCCcEEEEcccC-CchHHHHHHHhCCCeeEeccCCCCCccccccccceeecCCccccccchhhHHHHHH
Q 012283 190 EYTDILGVMKNRYYDMVLSTKLA-GLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMV 268 (467)
Q Consensus 190 ~~~~l~~~Lr~~~yDlvI~l~~~-~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~~lL 268 (467)
...+..+.|++.+.|+||.+... +....+.+++.|++.-+ +..+..-+.-++++... .. .....+...
T Consensus 79 ~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i-hEqn~~~G~ank~~~~~-a~--------~V~~~f~~~- 147 (357)
T COG0707 79 GVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVII-HEQNAVPGLANKILSKF-AK--------KVASAFPKL- 147 (357)
T ss_pred HHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEE-EecCCCcchhHHHhHHh-hc--------eeeeccccc-
Confidence 23455557899999999998842 11334446777776543 22222111111111000 00 000000000
Q ss_pred HHcCCCCCCCCCCCCCCceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHh
Q 012283 269 DWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGL 348 (467)
Q Consensus 269 ~~Lgi~~~~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L 348 (467)
.-+.....+..+-.| +..+-...........+..+.+.|+|-+||-|+. .. .+...++...|
T Consensus 148 -~~~~~~~~~~~tG~P-----vr~~~~~~~~~~~~~~~~~~~~~ilV~GGS~Ga~-----------~l-n~~v~~~~~~l 209 (357)
T COG0707 148 -EAGVKPENVVVTGIP-----VRPEFEELPAAEVRKDGRLDKKTILVTGGSQGAK-----------AL-NDLVPEALAKL 209 (357)
T ss_pred -cccCCCCceEEecCc-----ccHHhhccchhhhhhhccCCCcEEEEECCcchhH-----------HH-HHHHHHHHHHh
Confidence 011110000000011 1111111001111111111357888887665532 11 23344444455
Q ss_pred hhCCCEEEecCcccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCCc-hHHHHHHhcCCCEEEEeCCCC-CCCcc
Q 012283 349 REFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNT-AAIQLANAREKPSIALFSSEL-KGRLF 426 (467)
Q Consensus 349 ~~~~~Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~DT-G~~HLAaAlg~PtVaLFg~t~-p~~~~ 426 (467)
.++..|+...|+++.+................=..++.++++.||++||==. ..+-=++++|+|.|-+--+.- .....
T Consensus 210 ~~~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~ 289 (357)
T COG0707 210 ANRIQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQE 289 (357)
T ss_pred hhCeEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHH
Confidence 4433466667766655444433322212222234789999999999999755 455566799999998865542 11110
Q ss_pred ---ccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 427 ---VPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 427 ---~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
........+.++.. .++++|++.+.+.+++..
T Consensus 290 ~NA~~l~~~gaa~~i~~-----~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 290 YNAKFLEKAGAALVIRQ-----SELTPEKLAELILRLLSN 324 (357)
T ss_pred HHHHHHHhCCCEEEecc-----ccCCHHHHHHHHHHHhcC
Confidence 00001112333322 248899999999998863
No 24
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.20 E-value=0.096 Score=52.77 Aligned_cols=101 Identities=11% Similarity=-0.001 Sum_probs=59.6
Q ss_pred EEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcC--CCCCEEEEecCCC-----CCCC-------hH
Q 012283 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN--KNVRWANVYDLDD-----DWPE-------PA 189 (467)
Q Consensus 124 rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~--p~Id~ii~~~~~~-----~~~~-------~~ 189 (467)
||+|...+.=|++-....+.++|.++ +.++++++....... +.. ..++ +..++... .+.. +.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~--G~ev~v~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER--GAEVLFLGTKRGLEA-RLVPKAGIP-LHTIPVGGLRRKGSLKKLKAPFKLLK 76 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC--CCEEEEEECCCcchh-hcccccCCc-eEEEEecCcCCCChHHHHHHHHHHHH
Confidence 57777776559999999999999998 789999988653221 211 1243 33333211 1111 11
Q ss_pred HHHHHHHHhHhCCCcEEEEcccC-CchHHHHHHHhCCCee
Q 012283 190 EYTDILGVMKNRYYDMVLSTKLA-GLGHAAFLFMTTARDR 228 (467)
Q Consensus 190 ~~~~l~~~Lr~~~yDlvI~l~~~-~~~~~ll~~l~gak~r 228 (467)
....+.+.+++.++|+|+..... .+...+.++..+.+..
T Consensus 77 ~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v 116 (350)
T cd03785 77 GVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLV 116 (350)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEE
Confidence 22345566788899999976531 1122334566666654
No 25
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.16 E-value=0.053 Score=55.60 Aligned_cols=295 Identities=13% Similarity=0.056 Sum_probs=144.7
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCch--hhhhcCCCCCEEEEecCCC-----CCCC-------h
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK--QTFELNKNVRWANVYDLDD-----DWPE-------P 188 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~--~l~~~~p~Id~ii~~~~~~-----~~~~-------~ 188 (467)
+||++.--|-=|-+.=...+.++|++ ++.+|.++++.... .++... .++ .+.++... .++. +
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~--~g~~v~~vg~~~~~e~~l~~~~-g~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 77 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE--DNWDISYIGSHQGIEKTIIEKE-NIP-YYSISSGKLRRYFDLKNIKDPFLVM 77 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh--CCCEEEEEECCCccccccCccc-CCc-EEEEeccCcCCCchHHHHHHHHHHH
Confidence 45555555667888888888889997 58999999977643 343332 233 22333211 1111 2
Q ss_pred HHHHHHHHHhHhCCCcEEEEcccCCch---HHHHHHHhCCCeeEeccCCCCCcccccccc---ceeecCCccccccchhh
Q 012283 189 AEYTDILGVMKNRYYDMVLSTKLAGLG---HAAFLFMTTARDRVSYIYPNVNAAGAGLLL---SETFTAESMNLSERGYN 262 (467)
Q Consensus 189 ~~~~~l~~~Lr~~~yDlvI~l~~~~~~---~~ll~~l~gak~riG~~~~~~~~~~~~~~~---t~~i~~~~~~~~~~~~h 262 (467)
...++.++.+++.++|+|+.+.. .- ..+.+++.|.+..+ +..+..-+. .+.++ .+.+-..-. ....
T Consensus 78 ~~~~~~~~i~~~~kPdvvi~~Gg--y~s~p~~~aa~~~~~p~~i-~e~n~~~g~-~nr~~~~~a~~v~~~f~----~~~~ 149 (352)
T PRK12446 78 KGVMDAYVRIRKLKPDVIFSKGG--FVSVPVVIGGWLNRVPVLL-HESDMTPGL-ANKIALRFASKIFVTFE----EAAK 149 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEecCc--hhhHHHHHHHHHcCCCEEE-ECCCCCccH-HHHHHHHhhCEEEEEcc----chhh
Confidence 23455666789999999999763 33 35668888888654 332211110 00010 000000000 0000
Q ss_pred HHH-HHHHHcCCCCCCCCCCCCCCceeecCHHHHHHHHHHHHHcCCCC-CcEEEEecCCCCccccccCCCCCCCCCCHHH
Q 012283 263 MYE-QMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQ-GKYIVIHGIESDSKASMQSRGDTDSLLPIQV 340 (467)
Q Consensus 263 ~~~-~lL~~Lgi~~~~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~-~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~ 340 (467)
.+. .-....|.+. .+ .+...+...+ .+.+++.+ ++.|+|-+|+-|+. .-.+.
T Consensus 150 ~~~~~k~~~tG~Pv-------r~----~~~~~~~~~~---~~~~~l~~~~~~iLv~GGS~Ga~------------~in~~ 203 (352)
T PRK12446 150 HLPKEKVIYTGSPV-------RE----EVLKGNREKG---LAFLGFSRKKPVITIMGGSLGAK------------KINET 203 (352)
T ss_pred hCCCCCeEEECCcC-------Cc----ccccccchHH---HHhcCCCCCCcEEEEECCccchH------------HHHHH
Confidence 000 0000122221 11 1111111111 12344433 46777876655532 22345
Q ss_pred HHHHHHHhhhCCCEEEecCcccHHHHHHHHhcCCCCcccCCH-HHHHHHHHhcCEEEeCCch-HHHHHHhcCCCEEEEeC
Q 012283 341 WAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTP-GQLAALINDSAGVIATNTA-AIQLANAREKPSIALFS 418 (467)
Q Consensus 341 ~~~Li~~L~~~~~Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL-~el~alI~~a~lvIg~DTG-~~HLAaAlg~PtVaLFg 418 (467)
+.+++..+.....|+...|.++.+.... . ..+.....=+ .++..+++.||++|+-=+| .+.=+++.|+|.|.+--
T Consensus 204 ~~~~l~~l~~~~~vv~~~G~~~~~~~~~--~-~~~~~~~~f~~~~m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP~ 280 (352)
T PRK12446 204 VREALPELLLKYQIVHLCGKGNLDDSLQ--N-KEGYRQFEYVHGELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPL 280 (352)
T ss_pred HHHHHHhhccCcEEEEEeCCchHHHHHh--h-cCCcEEecchhhhHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEEcC
Confidence 5566666543333555555544333211 1 1121111112 5688999999999999544 55999999999999921
Q ss_pred CCC--CCCcc--ccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 012283 419 SEL--KGRLF--VPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNE 462 (467)
Q Consensus 419 ~t~--p~~~~--~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~ 462 (467)
+.. +...+ +-+..+......- .-.+++++.+.+++.+++.
T Consensus 281 ~~~~~~~~Q~~Na~~l~~~g~~~~l----~~~~~~~~~l~~~l~~ll~ 324 (352)
T PRK12446 281 SKFASRGDQILNAESFERQGYASVL----YEEDVTVNSLIKHVEELSH 324 (352)
T ss_pred CCCCCCchHHHHHHHHHHCCCEEEc----chhcCCHHHHHHHHHHHHc
Confidence 110 11111 0000111111110 1245688999988888764
No 26
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.13 E-value=0.081 Score=53.25 Aligned_cols=101 Identities=10% Similarity=-0.056 Sum_probs=60.2
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCch--hhhhcCCCCCEEEEecCCCCC-CC-----------h
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK--QTFELNKNVRWANVYDLDDDW-PE-----------P 188 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~--~l~~~~p~Id~ii~~~~~~~~-~~-----------~ 188 (467)
|||+|+.-+--||+-....++++|+++ +.++++++..... .+++. ..++ ++.++..... .. +
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~--g~eV~vv~~~~~~~~~~~~~-~g~~-~~~i~~~~~~~~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR--GVEVLWLGTKRGLEKRLVPK-AGIE-FYFIPVGGLRRKGSFRLIKTPLKLL 76 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC--CCEEEEEeCCCcchhccccc-CCCc-eEEEeccCcCCCChHHHHHHHHHHH
Confidence 588988777778888777999999987 5799999875431 22222 2332 3333322100 01 1
Q ss_pred HHHHHHHHHhHhCCCcEEEEcccCC-chHHHHHHHhCCCe
Q 012283 189 AEYTDILGVMKNRYYDMVLSTKLAG-LGHAAFLFMTTARD 227 (467)
Q Consensus 189 ~~~~~l~~~Lr~~~yDlvI~l~~~~-~~~~ll~~l~gak~ 227 (467)
....++.+.++++++|+|+...... +...+.+++.+.+.
T Consensus 77 ~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~ 116 (348)
T TIGR01133 77 KAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPL 116 (348)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCE
Confidence 2234555668888999999975311 12233456666654
No 27
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.04 E-value=0.061 Score=54.66 Aligned_cols=103 Identities=11% Similarity=-0.057 Sum_probs=63.0
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCc--hhhhhcCCCCCEEEEecCCC--CCC----------C
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG--KQTFELNKNVRWANVYDLDD--DWP----------E 187 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~--~~l~~~~p~Id~ii~~~~~~--~~~----------~ 187 (467)
+|||+|+..+.=|+.-...-+.++|++. +.++++++.... ...++. ..++ ++.++... ... .
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~--g~ev~vv~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~l~~~~~~ 76 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKR--GWEVLYLGTARGMEARLVPK-AGIE-FHFIPSGGLRRKGSLANLKAPFKL 76 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhC--CCEEEEEECCCchhhhcccc-CCCc-EEEEeccCcCCCChHHHHHHHHHH
Confidence 3899998764339999888999999987 789999998663 233332 2333 33343211 001 1
Q ss_pred hHHHHHHHHHhHhCCCcEEEEcccC-CchHHHHHHHhCCCee
Q 012283 188 PAEYTDILGVMKNRYYDMVLSTKLA-GLGHAAFLFMTTARDR 228 (467)
Q Consensus 188 ~~~~~~l~~~Lr~~~yDlvI~l~~~-~~~~~ll~~l~gak~r 228 (467)
+..+.++.+.+++.++|+++..... .+...+..+..+.+..
T Consensus 77 ~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v 118 (357)
T PRK00726 77 LKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLV 118 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEE
Confidence 2233455566788899999998631 1233334556666654
No 28
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.95 E-value=0.084 Score=52.35 Aligned_cols=247 Identities=13% Similarity=0.106 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHHCCCcEEEEEEcCC--chhhhhcCCCCCEEEEecCCCCCC-Ch----HHHHHHHHHhHhCCCcEEEEcc
Q 012283 138 LFFPAIQLLKDRYPGVLIDVIASAR--GKQTFELNKNVRWANVYDLDDDWP-EP----AEYTDILGVMKNRYYDMVLSTK 210 (467)
Q Consensus 138 l~tP~l~aLk~~yP~a~I~ll~~~~--~~~l~~~~p~Id~ii~~~~~~~~~-~~----~~~~~l~~~Lr~~~yDlvI~l~ 210 (467)
..-+++..+++. |.+|-+.|... ..++++.....-.++.=.....+. .+ .....+-+..++.+.|+.+--+
T Consensus 15 fFk~lI~elekk--G~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i~~~ 92 (346)
T COG1817 15 FFKNLIWELEKK--GHEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAIGKH 92 (346)
T ss_pred HHHHHHHHHHhC--CeEEEEEEeecCcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEeecC
Confidence 345678888887 66777777754 467777764443332211111111 11 1224555667788999999855
Q ss_pred cCCchHHHHHHHhCCCeeEeccCCCCCcccccccc----ceeecCCccccccchhhHHHHHHHHcCCCCCCCC-C----C
Q 012283 211 LAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLL----SETFTAESMNLSERGYNMYEQMVDWLGRPFRSVP-R----H 281 (467)
Q Consensus 211 ~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~~----t~~i~~~~~~~~~~~~h~~~~lL~~Lgi~~~~v~-~----~ 281 (467)
+...+-.++.+|.+. |++....+.. ....+ .+.+-.+. ...+..+...|....... . .
T Consensus 93 --s~~l~rvafgLg~ps-Ii~~D~ehA~--~qnkl~~Pla~~ii~P~--------~~~~~~~~~~G~~p~~i~~~~giae 159 (346)
T COG1817 93 --SPELPRVAFGLGIPS-IIFVDNEHAE--AQNKLTLPLADVIITPE--------AIDEEELLDFGADPNKISGYNGIAE 159 (346)
T ss_pred --CcchhhHHhhcCCce-EEecCChhHH--HHhhcchhhhhheeccc--------ccchHHHHHhCCCccceecccceeE
Confidence 345555677788774 5555332211 11111 11111111 111123344554321100 0 0
Q ss_pred CCCCceeecCHHHHHHHHHHHHHcCCCC-CcEEEEecCCCCccccccCCCCCCCCCCH--HHHHHHHHHhhhCCCEEEec
Q 012283 282 PVPPLRVSISRRLKEVVAEKYKNAGAEQ-GKYIVIHGIESDSKASMQSRGDTDSLLPI--QVWAEIANGLREFRPLFVIP 358 (467)
Q Consensus 282 ~~p~~~l~l~~~~~~~a~~~l~~~~l~~-~~~I~i~pgas~s~~~~~~r~~~K~rWP~--e~~~~Li~~L~~~~~Vvl~g 358 (467)
..+-+. +.++ .+.++++|+.. .+||++-|-..++.|- .|.. +.-..+++.|.+.+ +++++
T Consensus 160 ~~~v~~--f~pd-----~evlkeLgl~~~~~yIVmRpe~~~A~y~---------~g~~~~~~~~~li~~l~k~g-iV~ip 222 (346)
T COG1817 160 LANVYG--FVPD-----PEVLKELGLEEGETYIVMRPEPWGAHYD---------NGDRGISVLPDLIKELKKYG-IVLIP 222 (346)
T ss_pred Eeeccc--CCCC-----HHHHHHcCCCCCCceEEEeeccccceee---------ccccchhhHHHHHHHHHhCc-EEEec
Confidence 011111 1111 24678889875 4799999976665532 2333 33667888888777 66777
Q ss_pred CcccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCC
Q 012283 359 HEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSS 419 (467)
Q Consensus 359 ~~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~ 419 (467)
.+.+.+. +.+.+.+.+....+-+...|+-.|+++||.-.-..-=||++|||+|..|..
T Consensus 223 r~~~~~e---ife~~~n~i~pk~~vD~l~Llyya~lvig~ggTMarEaAlLGtpaIs~~pG 280 (346)
T COG1817 223 REKEQAE---IFEGYRNIIIPKKAVDTLSLLYYATLVIGAGGTMAREAALLGTPAISCYPG 280 (346)
T ss_pred CchhHHH---HHhhhccccCCcccccHHHHHhhhheeecCCchHHHHHHHhCCceEEecCC
Confidence 6655432 223333333233456677899999999997666666789999999999944
No 29
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=96.88 E-value=0.023 Score=58.52 Aligned_cols=301 Identities=15% Similarity=0.129 Sum_probs=152.0
Q ss_pred EEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCC--C----CCChHHH----HHH
Q 012283 125 CCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD--D----WPEPAEY----TDI 194 (467)
Q Consensus 125 ILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~--~----~~~~~~~----~~l 194 (467)
|+|+.-..=||.. ..-++++||+++|+.++.=+..+..+. .+++-++.++.-. . ++.+..+ .++
T Consensus 1 I~i~AGE~SGD~~-ga~Li~~Lk~~~p~~~~~GvGG~~M~~-----~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~ 74 (373)
T PF02684_consen 1 IFISAGEASGDLH-GARLIRALKARDPDIEFYGVGGPRMQA-----AGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKL 74 (373)
T ss_pred CEEEeeCccHHHH-HHHHHHHHHhhCCCcEEEEEechHHHh-----CCCceecchHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 4556666678875 456899999999999999999887654 2343332222111 0 1111122 334
Q ss_pred HHHhHhCCCcEEEEcccCCc--hHHHHHHHhCCCee-EeccCCCCCccccccccceeecCCccccccchhhHHH------
Q 012283 195 LGVMKNRYYDMVLSTKLAGL--GHAAFLFMTTARDR-VSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYE------ 265 (467)
Q Consensus 195 ~~~Lr~~~yDlvI~l~~~~~--~~~ll~~l~gak~r-iG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~------ 265 (467)
.+.++.++.|++|-....++ +-+-.++-.|.+.+ +=|..+. -|-|+ ..+- ......++
T Consensus 75 ~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~Pq--vWAWr--------~~R~---~~i~~~~D~ll~if 141 (373)
T PF02684_consen 75 VERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQ--VWAWR--------PGRA---KKIKKYVDHLLVIF 141 (373)
T ss_pred HHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCc--eeeeC--------ccHH---HHHHHHHhheeECC
Confidence 44567789999988775555 33333455555532 3333221 11111 0000 00111111
Q ss_pred ----HHHHHcCCCCCCCCCCCCCCceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHH
Q 012283 266 ----QMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVW 341 (467)
Q Consensus 266 ----~lL~~Lgi~~~~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~ 341 (467)
.+.+..|++...|. .|-++..-.........+.+ .. +++++|++-||+-. .+.++.+| -|
T Consensus 142 PFE~~~y~~~g~~~~~VG---HPl~d~~~~~~~~~~~~~~~--l~-~~~~iIaLLPGSR~--------~EI~rllP--~~ 205 (373)
T PF02684_consen 142 PFEPEFYKKHGVPVTYVG---HPLLDEVKPEPDRAEAREKL--LD-PDKPIIALLPGSRK--------SEIKRLLP--IF 205 (373)
T ss_pred cccHHHHhccCCCeEEEC---CcchhhhccCCCHHHHHHhc--CC-CCCcEEEEeCCCCH--------HHHHHHHH--HH
Confidence 23444554432111 22111100111112222221 11 24689999996433 23342343 68
Q ss_pred HHHHHHhhhCC--C-EEEecCccc-HHHHHHHHhcCC-CCcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEE
Q 012283 342 AEIANGLREFR--P-LFVIPHEKE-REGVEDVVGDDA-SIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIAL 416 (467)
Q Consensus 342 ~~Li~~L~~~~--~-Vvl~g~~~e-~~~~~~i~~~~~-~~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaL 416 (467)
.+.++.|.++. . +++-..+.. .+.++++..... .......-.+.-.+++.||+.+..-.-..==|+.+|+|+|+.
T Consensus 206 l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~SGTaTLE~Al~g~P~Vv~ 285 (373)
T PF02684_consen 206 LEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAASGTATLEAALLGVPMVVA 285 (373)
T ss_pred HHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcCCHHHHHHHHhCCCEEEE
Confidence 88888888775 2 333333333 333444443332 222122225678889999998877555555577899999999
Q ss_pred eCCCCCCCcc-------ccCCCCCceEeecCC---CCCC-CCCCHHHHHHHHHHHHHh
Q 012283 417 FSSELKGRLF-------VPNAEEKKCTVISSR---TGKL-IDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 417 Fg~t~p~~~~-------~P~~~~~~c~i~~~~---~~cm-~~Is~e~V~~ai~~ll~~ 463 (467)
|-.+ +...| .|+.+-.+ ++.+. ...+ .+.+++.+.+++.+++..
T Consensus 286 Yk~~-~lt~~iak~lvk~~~isL~N--iia~~~v~PEliQ~~~~~~~i~~~~~~ll~~ 340 (373)
T PF02684_consen 286 YKVS-PLTYFIAKRLVKVKYISLPN--IIAGREVVPELIQEDATPENIAAELLELLEN 340 (373)
T ss_pred EcCc-HHHHHHHHHhhcCCEeechh--hhcCCCcchhhhcccCCHHHHHHHHHHHhcC
Confidence 9866 22111 12211111 01110 1111 356899999888887754
No 30
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.85 E-value=0.45 Score=46.63 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=56.6
Q ss_pred EEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCC----CCCChHHHHHHHHHhH
Q 012283 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD----DWPEPAEYTDILGVMK 199 (467)
Q Consensus 124 rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~----~~~~~~~~~~l~~~Lr 199 (467)
|||++....-|.......+++.|++. +.++++++......-......++ ++.++... .+..+.....+.+.++
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~--g~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAA--GYEVHVVAPPGDELEELEALGVK-VIPIPLDRRGINPFKDLKALLRLYRLLR 77 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhc--CCeeEEEecCCCcccccccCCce-EEeccccccccChHhHHHHHHHHHHHHH
Confidence 68888888888999999999999776 78999999876544212223343 33444322 1222344556677788
Q ss_pred hCCCcEEEEcc
Q 012283 200 NRYYDMVLSTK 210 (467)
Q Consensus 200 ~~~yDlvI~l~ 210 (467)
+.++|+++...
T Consensus 78 ~~~~dvv~~~~ 88 (359)
T cd03808 78 KERPDIVHTHT 88 (359)
T ss_pred hcCCCEEEEcc
Confidence 89999988754
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=96.82 E-value=0.075 Score=53.51 Aligned_cols=100 Identities=11% Similarity=-0.019 Sum_probs=65.1
Q ss_pred EEEEEec-CCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcC--CCCCEE----EEecCCC--CCCCh------
Q 012283 124 RCCCIIS-GGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN--KNVRWA----NVYDLDD--DWPEP------ 188 (467)
Q Consensus 124 rILII~~-~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~--p~Id~i----i~~~~~~--~~~~~------ 188 (467)
|||+... .|+|-+.-..+++++|++ +.+|.+++......+++.. +.+..+ +...... .+..+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~---g~ev~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~ 77 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN---DYEVSYIASGRSKNYISKYGFKVFETFPGIKLKGEDGKVNIVKTLRNKEYS 77 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC---CCeEEEEEcCCHHHhhhhhcCcceeccCCceEeecCCcCcHHHHHHhhccc
Confidence 5777555 599999999999999996 7889999988766665543 111111 1111111 01111
Q ss_pred --HHHHHHHHHhHhCCCcEEEEcccCCchHHHHHHHhCCCee
Q 012283 189 --AEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDR 228 (467)
Q Consensus 189 --~~~~~l~~~Lr~~~yDlvI~l~~~~~~~~ll~~l~gak~r 228 (467)
....+..+.+++.++|+||... ++.+.+.++..|++..
T Consensus 78 ~~~~~~~~~~~l~~~~pDlVi~d~--~~~~~~aA~~~~iP~i 117 (321)
T TIGR00661 78 PKKAIRREINIIREYNPDLIISDF--EYSTVVAAKLLKIPVI 117 (321)
T ss_pred cHHHHHHHHHHHHhcCCCEEEECC--chHHHHHHHhcCCCEE
Confidence 1233455678889999999975 3566777888998865
No 32
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=96.80 E-value=0.1 Score=53.68 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=45.4
Q ss_pred HHHHHHHhhhC-C-CEEEecCc--ccHHHHHHHHhcCC-CCcccCCHHHHHHHHHhcCEEEeCCchHH--HHHHhcCCCE
Q 012283 341 WAEIANGLREF-R-PLFVIPHE--KEREGVEDVVGDDA-SIVFITTPGQLAALINDSAGVIATNTAAI--QLANAREKPS 413 (467)
Q Consensus 341 ~~~Li~~L~~~-~-~Vvl~g~~--~e~~~~~~i~~~~~-~~~~~~sL~el~alI~~a~lvIg~DTG~~--HLAaAlg~Pt 413 (467)
+.++++.+.+. . .+++++|. ..++.+++.....+ ++.+..-..++..+++.||++|+ ++|++ -=|.|.|+|+
T Consensus 218 ~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~-~~gg~t~~EA~a~g~Pv 296 (380)
T PRK13609 218 VKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMIT-KPGGITLSEAAALGVPV 296 (380)
T ss_pred HHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEe-CCCchHHHHHHHhCCCE
Confidence 45677766544 2 34444332 23455555544433 33332234578899999999998 45553 4578999997
Q ss_pred EEE
Q 012283 414 IAL 416 (467)
Q Consensus 414 VaL 416 (467)
|+.
T Consensus 297 I~~ 299 (380)
T PRK13609 297 ILY 299 (380)
T ss_pred EEC
Confidence 764
No 33
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=96.74 E-value=0.35 Score=50.02 Aligned_cols=266 Identities=16% Similarity=0.127 Sum_probs=136.6
Q ss_pred EEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEE-cCCchhhhh-cCCCCCEEEEecCCCCCCChHHHHHHHHHhHhC
Q 012283 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIA-SARGKQTFE-LNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (467)
Q Consensus 124 rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~-~~~~~~l~~-~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~~ 201 (467)
..+-++...+|.++..+|++++|++.||+..|.+-+ .+-..+.++ ..+....+...+.+.. ...-+-|++-
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~-------~~v~rFl~~~ 122 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP-------IAVRRFLRKW 122 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch-------HHHHHHHHhc
Confidence 356677789999999999999999999999998887 344445444 3554333334444331 1223456667
Q ss_pred CCcEEEEcccCCchHHHH-HHHhCCCeeEeccC-CCCCccccc---cccceeecCCccccccchhhHHHHHHHHcCCCCC
Q 012283 202 YYDMVLSTKLAGLGHAAF-LFMTTARDRVSYIY-PNVNAAGAG---LLLSETFTAESMNLSERGYNMYEQMVDWLGRPFR 276 (467)
Q Consensus 202 ~yDlvI~l~~~~~~~~ll-~~l~gak~riG~~~-~~~~~~~~~---~~~t~~i~~~~~~~~~~~~h~~~~lL~~Lgi~~~ 276 (467)
+.|++|.+..--|...+. +...|++..+-=.+ -.+....|+ .++...+..-..-. -..+.-.+-+..||...-
T Consensus 123 ~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~--aQse~D~~Rf~~LGa~~v 200 (419)
T COG1519 123 RPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLIL--AQSEEDAQRFRSLGAKPV 200 (419)
T ss_pred CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceee--ecCHHHHHHHHhcCCcce
Confidence 899999988533444443 44556664331000 000000110 11111110000000 001111234556776531
Q ss_pred CCCCCCCCCceee--cCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCCC-
Q 012283 277 SVPRHPVPPLRVS--ISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRP- 353 (467)
Q Consensus 277 ~v~~~~~p~~~l~--l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~~- 353 (467)
. . .-.+++. .++.+....+.+-...+.. .+.++.. |. . + =-.|-+.++.+.|.++.+
T Consensus 201 ~--v--~GNlKfd~~~~~~~~~~~~~~r~~l~~~-r~v~iaa---ST------H--~----GEeei~l~~~~~l~~~~~~ 260 (419)
T COG1519 201 V--V--TGNLKFDIEPPPQLAAELAALRRQLGGH-RPVWVAA---ST------H--E----GEEEIILDAHQALKKQFPN 260 (419)
T ss_pred E--E--ecceeecCCCChhhHHHHHHHHHhcCCC-CceEEEe---cC------C--C----chHHHHHHHHHHHHhhCCC
Confidence 1 1 1122332 3333444444444444422 3433333 11 1 1 115678999999988862
Q ss_pred --EEEecCccc-HHHHHHHHhcCCC----------------CcccCCHHHHHHHHHhcCEEEeCCchH------HHHHHh
Q 012283 354 --LFVIPHEKE-REGVEDVVGDDAS----------------IVFITTPGQLAALINDSAGVIATNTAA------IQLANA 408 (467)
Q Consensus 354 --Vvl~g~~~e-~~~~~~i~~~~~~----------------~~~~~sL~el~alI~~a~lvIg~DTG~------~HLAaA 408 (467)
+++.+-..| .+.++++....+- +...-+++|+..+...||+.+=.-|-. .==+++
T Consensus 261 ~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~ 340 (419)
T COG1519 261 LLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAA 340 (419)
T ss_pred ceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhhHHH
Confidence 555554444 3455555443210 011357899999999999876544432 113667
Q ss_pred cCCCEEEEeCCC
Q 012283 409 REKPSIALFSSE 420 (467)
Q Consensus 409 lg~PtVaLFg~t 420 (467)
+++|+ |||+.
T Consensus 341 ~~~pv--i~Gp~ 350 (419)
T COG1519 341 FGTPV--IFGPY 350 (419)
T ss_pred cCCCE--EeCCc
Confidence 77776 46665
No 34
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.68 E-value=0.021 Score=61.79 Aligned_cols=261 Identities=10% Similarity=0.006 Sum_probs=133.9
Q ss_pred EEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCC------CCCChHH----HHH
Q 012283 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD------DWPEPAE----YTD 193 (467)
Q Consensus 124 rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~------~~~~~~~----~~~ 193 (467)
||+|+.-..=||+. ..-++++||+++|+.++.=+..+..+.. +++-++.++.-. -++.+.. +.+
T Consensus 228 kIfI~AGE~SGDlh-gA~Li~aLk~~~P~i~~~GvGG~~M~aa-----G~e~l~d~~eLsVmG~~EVL~~l~~l~~~~~~ 301 (608)
T PRK01021 228 SCFISAGEHSGDTL-GGNLLKEIKALYPDIHCFGVGGPQMRAE-----GFHPLFNMEEFQVSGFWEVLLALFKLWYRYRK 301 (608)
T ss_pred eEEEEeccccHHHH-HHHHHHHHHhcCCCcEEEEEccHHHHhC-----cCcccCChHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 78888877889965 4567999999999999988888765531 222111111000 0111222 234
Q ss_pred HHHHhHhCCCcEEEEcccCCchHHH--HHHHhCCC-eeEeccCCCCCccccccccceeecCCccccccchhhHHH-----
Q 012283 194 ILGVMKNRYYDMVLSTKLAGLGHAA--FLFMTTAR-DRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYE----- 265 (467)
Q Consensus 194 l~~~Lr~~~yDlvI~l~~~~~~~~l--l~~l~gak-~riG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~----- 265 (467)
+.+.+++++.|++|-....++.-.+ .++-.|.+ ..+=|..+. -+-|+ ..+- ......++
T Consensus 302 l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPq--VWAWR--------~~Ri---kki~k~vD~ll~I 368 (608)
T PRK01021 302 LYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPS--IWAWR--------PKRK---TILEKYLDLLLLI 368 (608)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc--ceeeC--------cchH---HHHHHHhhhheec
Confidence 4456778899999887754553333 33434431 123333221 11111 0000 00111112
Q ss_pred -----HHHHHcCCCCCCCCCCCCCCceeecC-HHHHHHHHHHHHHcCCC-CCcEEEEecCCCCccccccCCCCCCCCCCH
Q 012283 266 -----QMVDWLGRPFRSVPRHPVPPLRVSIS-RRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPI 338 (467)
Q Consensus 266 -----~lL~~Lgi~~~~v~~~~~p~~~l~l~-~~~~~~a~~~l~~~~l~-~~~~I~i~pgas~s~~~~~~r~~~K~rWP~ 338 (467)
++.+.-|++..-|. .|-++. ++ ..+. ++..++++++ +++.|++-||+-. .+.++.+|
T Consensus 369 fPFE~~~y~~~gv~v~yVG---HPL~d~-i~~~~~~---~~~r~~lgl~~~~~iIaLLPGSR~--------~EI~rllP- 432 (608)
T PRK01021 369 LPFEQNLFKDSPLRTVYLG---HPLVET-ISSFSPN---LSWKEQLHLPSDKPIVAAFPGSRR--------GDILRNLT- 432 (608)
T ss_pred CccCHHHHHhcCCCeEEEC---CcHHhh-cccCCCH---HHHHHHcCCCCCCCEEEEECCCCH--------HHHHHHHH-
Confidence 23444555432111 121111 11 0011 1223456664 4589999996432 24443344
Q ss_pred HHHHHHHH--HhhhCCC-EEEecCcccHHHHHHHHhcCCCCccc-CCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEE
Q 012283 339 QVWAEIAN--GLREFRP-LFVIPHEKEREGVEDVVGDDASIVFI-TTPGQLAALINDSAGVIATNTAAIQLANAREKPSI 414 (467)
Q Consensus 339 e~~~~Li~--~L~~~~~-Vvl~g~~~e~~~~~~i~~~~~~~~~~-~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtV 414 (467)
-+.+.++ .+.++.. ++....+.+++..++..+..+-+... .+-.+.-.+++.||+.++.-.-..==|+.+|+|+|
T Consensus 433 -v~l~aa~~~~l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~aLaaSGTaTLEaAL~g~PmV 511 (608)
T PRK01021 433 -IQVQAFLASSLASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDCALAKCGTIVLETALNQTPTI 511 (608)
T ss_pred -HHHHHHHHHHhccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCeeeecCCHHHHHHHHhCCCEE
Confidence 5677776 5544332 33223333346666655422201111 11113468999999999886666666888999999
Q ss_pred EEeCCC
Q 012283 415 ALFSSE 420 (467)
Q Consensus 415 aLFg~t 420 (467)
+.|-.+
T Consensus 512 V~YK~s 517 (608)
T PRK01021 512 VTCQLR 517 (608)
T ss_pred EEEecC
Confidence 999655
No 35
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=96.66 E-value=0.053 Score=56.25 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCEEEeCCchHH--HHHHhcCCCEEEEe
Q 012283 382 PGQLAALINDSAGVIATNTAAI--QLANAREKPSIALF 417 (467)
Q Consensus 382 L~el~alI~~a~lvIg~DTG~~--HLAaAlg~PtVaLF 417 (467)
..++..+++.||++|+ .+|.+ -=|.|.|+|+|+.-
T Consensus 264 ~~~~~~~~~~aDl~I~-k~gg~tl~EA~a~G~PvI~~~ 300 (391)
T PRK13608 264 TKHMNEWMASSQLMIT-KPGGITISEGLARCIPMIFLN 300 (391)
T ss_pred cchHHHHHHhhhEEEe-CCchHHHHHHHHhCCCEEECC
Confidence 3688999999999998 45554 45889999999973
No 36
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=96.56 E-value=0.38 Score=48.02 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=61.6
Q ss_pred HHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCC---CC
Q 012283 303 KNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SI 376 (467)
Q Consensus 303 ~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~---~~ 376 (467)
++.++..++++++..|... ..|. .+...+.+..+.++. .+++.|...+.+..++...... ++
T Consensus 180 ~~~~~~~~~~~~l~~g~~~---------~~kg---~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v 247 (360)
T cd04951 180 NALGVKNDTFVILAVGRLV---------EAKD---YPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRV 247 (360)
T ss_pred HHcCcCCCCEEEEEEeeCc---------hhcC---cHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcE
Confidence 4445554566666643211 2232 356666666666542 3555555555555555444332 23
Q ss_pred cccCCHHHHHHHHHhcCEEEeCC-----chHHHHHHhcCCCEEEE
Q 012283 377 VFITTPGQLAALINDSAGVIATN-----TAAIQLANAREKPSIAL 416 (467)
Q Consensus 377 ~~~~sL~el~alI~~a~lvIg~D-----TG~~HLAaAlg~PtVaL 416 (467)
.+.....++..+++.||++|.+- ...+-=|.|.|+|+|+-
T Consensus 248 ~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~ 292 (360)
T cd04951 248 KLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVAT 292 (360)
T ss_pred EEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEe
Confidence 33344578899999999999875 45677788999999973
No 37
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.54 E-value=0.29 Score=49.82 Aligned_cols=103 Identities=14% Similarity=0.029 Sum_probs=55.8
Q ss_pred cEEEEEecC-CchhH-HhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcC--CCCCEEEEecCCCCCCChHHHHHHHHHh
Q 012283 123 RRCCCIISG-GVYEN-LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN--KNVRWANVYDLDDDWPEPAEYTDILGVM 198 (467)
Q Consensus 123 ~rILII~~~-~IGD~-Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~--p~Id~ii~~~~~~~~~~~~~~~~l~~~L 198 (467)
.|||.|..+ ..|-+ -+...+++.|.+. +.++++++-.....+.+.. .+|. ++.+.... ...+..+.++.+.+
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~--~~~~~v~~~~~~~~~~~~~~~~~i~-~~~~~~~~-~~~~~~~~~l~~~l 77 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPAD--RYRHAVVALTEVSAFRKRIQRPDVA-FYALHKQP-GKDVAVYPQLYRLL 77 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhcccc--ccceEEEEcCCCChhHHHHHhcCce-EEEeCCCC-CCChHHHHHHHHHH
Confidence 467777654 34444 5566667777664 4566777644322333322 2343 55555332 13345566778888
Q ss_pred HhCCCcEEEEcccCCchHHHHHHHhCCCeeE
Q 012283 199 KNRYYDMVLSTKLAGLGHAAFLFMTTARDRV 229 (467)
Q Consensus 199 r~~~yDlvI~l~~~~~~~~ll~~l~gak~ri 229 (467)
++.++|+|..-........+.+++.+.+.++
T Consensus 78 ~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 78 RQLRPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred HHhCCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 9999999865332111223345556666444
No 38
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=96.51 E-value=0.32 Score=46.48 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHhhhCC-CE-EEecCccc----HHHHHHH---HhcCCCC---cccCCHHHHHHHHHhcCEEEeCCchHH
Q 012283 336 LPIQVWAEIANGLREFR-PL-FVIPHEKE----REGVEDV---VGDDASI---VFITTPGQLAALINDSAGVIATNTAAI 403 (467)
Q Consensus 336 WP~e~~~~Li~~L~~~~-~V-vl~g~~~e----~~~~~~i---~~~~~~~---~~~~sL~el~alI~~a~lvIg~DTG~~ 403 (467)
...+.++++++.+.+.+ .+ ++.....+ ....... ....... ....++.|+..++++|+++||+=-=..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH~~ 269 (286)
T PF04230_consen 190 EYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLHGA 269 (286)
T ss_pred hHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCHHH
Confidence 44778899999988865 22 22221111 1111111 1111111 126789999999999999999876666
Q ss_pred HHHHhcCCCEEEEeC
Q 012283 404 QLANAREKPSIALFS 418 (467)
Q Consensus 404 HLAaAlg~PtVaLFg 418 (467)
=+|.+.|+|+|+|-.
T Consensus 270 I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 270 ILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHcCCCEEEEec
Confidence 688899999999853
No 39
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=96.43 E-value=0.47 Score=48.95 Aligned_cols=46 Identities=13% Similarity=0.020 Sum_probs=42.3
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcC
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN 170 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~ 170 (467)
||||++-.++.||+-=..++.++|+++ |.+|++++.+..+..++..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r--Gh~V~~~t~~~~~~~v~~~ 46 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA--GHEVRVATPPEFADLVEAA 46 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC--CCeEEEeeCHhHHHHHHHc
Confidence 799999999999999999999999987 7999999999888777764
No 40
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=96.30 E-value=0.79 Score=44.62 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCC---CCcccCCHHHHHHHHHhcCEEEeCC-----chHHHHH
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SIVFITTPGQLAALINDSAGVIATN-----TAAIQLA 406 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~---~~~~~~sL~el~alI~~a~lvIg~D-----TG~~HLA 406 (467)
.+...+.++.+.+++ .+++.|...+.+..+++..... ++.......++..+++.||++|.+- ...+-=|
T Consensus 204 ~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea 283 (353)
T cd03811 204 FDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEA 283 (353)
T ss_pred hHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHH
Confidence 566777777877653 3555665555555555544332 2222233567788999999999764 3456778
Q ss_pred HhcCCCEEEE
Q 012283 407 NAREKPSIAL 416 (467)
Q Consensus 407 aAlg~PtVaL 416 (467)
.+.|+|+|+-
T Consensus 284 ~~~G~PvI~~ 293 (353)
T cd03811 284 MALGTPVVAT 293 (353)
T ss_pred HHhCCCEEEc
Confidence 9999999983
No 41
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=96.29 E-value=0.64 Score=47.88 Aligned_cols=276 Identities=12% Similarity=0.070 Sum_probs=134.4
Q ss_pred cEEEEEec---CCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCc---hhhhh-cCCCCCEEEEecC-CC----CCCChHH
Q 012283 123 RRCCCIIS---GGVYENLLFFPAIQLLKDRYPGVLIDVIASARG---KQTFE-LNKNVRWANVYDL-DD----DWPEPAE 190 (467)
Q Consensus 123 ~rILII~~---~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~---~~l~~-~~p~Id~ii~~~~-~~----~~~~~~~ 190 (467)
||+++... +..||-.+.-.++++|++.-|+++|.++|.... .+++. .+|....-..+.. +. .++.. .
T Consensus 1 m~~~L~g~~g~gN~Gdeail~all~~l~~~~~~~~~~~~~~~p~~i~~p~~~~~~p~~~~~~l~g~~k~v~R~~~k~~-~ 79 (385)
T COG2327 1 MKALLLGYYGFGNIGDEAILKALLDMLRRLNPDAKVLVMGRRPPVIVDPVFLSANPEGSAAGLNGRVKSVLRRRLKHP-G 79 (385)
T ss_pred CeeEEEeeecCCCcccHHHHHHHHHHHHhhCcccceeeeecCCcccccceeecCCcccCchhhhHHHHHHHHHhhccc-c
Confidence 46666653 679999999999999999999999999998541 11111 1222211000000 00 00000 1
Q ss_pred HHHHHHHhHhCCCcEEEEcccCCc-------h-------HHHHHHHhCCCee-EeccCCCCCccccccccceeecCCccc
Q 012283 191 YTDILGVMKNRYYDMVLSTKLAGL-------G-------HAAFLFMTTARDR-VSYIYPNVNAAGAGLLLSETFTAESMN 255 (467)
Q Consensus 191 ~~~l~~~Lr~~~yDlvI~l~~~~~-------~-------~~ll~~l~gak~r-iG~~~~~~~~~~~~~~~t~~i~~~~~~ 255 (467)
+..++..|. ++|++|.... +. . +..++++.+.+.- +|..-+.......+++++..+.....
T Consensus 80 ~~~il~~l~--~~d~~I~~Gg-~l~~d~~~~~~~~~~~~~~~la~l~~kp~~~~g~svGP~~~~~s~~~~~~~~~~~s~- 155 (385)
T COG2327 80 LVSILSALG--KADLIIIGGG-GLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQSVGPLKHPLSRQLLNYVLGGCSA- 155 (385)
T ss_pred HHHHHHHhh--hCCEEEEcCc-ccccCccccceehhhHHHHHHHHHcCCCEEEEeccCCCccCHHHHHHHHHHhcCCcE-
Confidence 112444453 6999998764 21 0 1233555665532 12221111111223444433321110
Q ss_pred cccchhhHHHHHHHHcCCCCCCCCCCCCCCceeecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCC
Q 012283 256 LSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSL 335 (467)
Q Consensus 256 ~~~~~~h~~~~lL~~Lgi~~~~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~r 335 (467)
. -.......++|+.+|++..-+ ..|.+.+..+.++... +.+....+.+++..-+-. . -..+.+
T Consensus 156 i-~vRD~~S~~llk~~gi~a~l~---~D~Af~L~~~~~~~~~------~~~~~~~~~~~i~lr~~~------~-~~t~~~ 218 (385)
T COG2327 156 I-SVRDPVSYELLKQLGINARLV---TDPAFLLPASSQNATA------SDVEAREKTVAITLRGLH------P-DNTAQR 218 (385)
T ss_pred E-EEecHHhHHHHHHcCCCeEee---cCcceecccccccccc------cccccccceEEEEecccC------C-chhhhH
Confidence 0 011123336888999875321 1332222222211110 001112456777641000 0 001100
Q ss_pred CCHHHHHHHHHHhh-hCC--C-EE--EecCcccHHHHHHHHhcCCCC---cc--cCCHHHHHHHHHhcCEEEeCCchHHH
Q 012283 336 LPIQVWAEIANGLR-EFR--P-LF--VIPHEKEREGVEDVVGDDASI---VF--ITTPGQLAALINDSAGVIATNTAAIQ 404 (467)
Q Consensus 336 WP~e~~~~Li~~L~-~~~--~-Vv--l~g~~~e~~~~~~i~~~~~~~---~~--~~sL~el~alI~~a~lvIg~DTG~~H 404 (467)
==.+.-.++++.+. +.. . +. -.+..+|....+.+..++... .. .....++..++++|+++||.===.+=
T Consensus 219 ~~~~~v~~~l~~~~~~~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~HsaI 298 (385)
T COG2327 219 SILKYVNEALDLVERQVKALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLHSAI 298 (385)
T ss_pred HHHHHHHHHHHHHHHhhhcceEEEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhHHHH
Confidence 00122233333331 112 1 22 234456677777787777632 22 23356777799999999998766666
Q ss_pred HHHhcCCCEEEEeCCC
Q 012283 405 LANAREKPSIALFSSE 420 (467)
Q Consensus 405 LAaAlg~PtVaLFg~t 420 (467)
+|.+.|+|+|+|.-..
T Consensus 299 ~al~~g~p~i~i~Y~~ 314 (385)
T COG2327 299 MALAFGVPAIAIAYDP 314 (385)
T ss_pred HHHhcCCCeEEEeecH
Confidence 8899999999997644
No 42
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.28 E-value=0.069 Score=55.42 Aligned_cols=311 Identities=13% Similarity=0.094 Sum_probs=145.1
Q ss_pred cCCccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCC---CCCChH----HH
Q 012283 119 RGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD---DWPEPA----EY 191 (467)
Q Consensus 119 r~~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~---~~~~~~----~~ 191 (467)
|.-+-||+|.--+-=||+.-. .++++|++..|+.++.-+..+.... +..+..-.+..+.... .++.+. .+
T Consensus 2 ~~~~~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~--~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~ 78 (385)
T TIGR00215 2 RIFIPTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAA--EGCEVLYSMEELSVMGLREVLGRLGRLLKIR 78 (385)
T ss_pred CCcCCeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHh--CcCccccChHHhhhccHHHHHHHHHHHHHHH
Confidence 334567877776667999999 9999999987765544443332211 0111000011111111 111111 22
Q ss_pred HHHHHHhHhCCCcEEEEcccCCchHHH--HHHHhCCCeeEeccCCCCCccccc----ccc----ceeecCCccccccchh
Q 012283 192 TDILGVMKNRYYDMVLSTKLAGLGHAA--FLFMTTARDRVSYIYPNVNAAGAG----LLL----SETFTAESMNLSERGY 261 (467)
Q Consensus 192 ~~l~~~Lr~~~yDlvI~l~~~~~~~~l--l~~l~gak~riG~~~~~~~~~~~~----~~~----t~~i~~~~~~~~~~~~ 261 (467)
.+..+.+++.+.|+||-+...++...+ .++..|++.- =|..+..+. |. ..+ ++.+..-
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v-~~i~P~~wa--w~~~~~r~l~~~~d~v~~~~--------- 146 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKII-YYISPQVWA--WRKWRAKKIEKATDFLLAIL--------- 146 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEE-EEeCCcHhh--cCcchHHHHHHHHhHhhccC---------
Confidence 344566888999999998854443233 5666777743 232111100 10 000 0000000
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCc-eeecCHHHHHHHHHHHHHcCCCC-CcEEEEecCCCCccccccCCCCCCCCCCHH
Q 012283 262 NMYEQMVDWLGRPFRSVPRHPVPPL-RVSISRRLKEVVAEKYKNAGAEQ-GKYIVIHGIESDSKASMQSRGDTDSLLPIQ 339 (467)
Q Consensus 262 h~~~~lL~~Lgi~~~~v~~~~~p~~-~l~l~~~~~~~a~~~l~~~~l~~-~~~I~i~pgas~s~~~~~~r~~~K~rWP~e 339 (467)
..-.+.+...|....-+ ..|-. .+.....+.. ...++++++. ++.|++-||+-++. -.| . .+
T Consensus 147 ~~e~~~~~~~g~~~~~v---GnPv~~~~~~~~~~~~---~~r~~lgl~~~~~~Ilvl~GSR~ae-------i~k--~-~~ 210 (385)
T TIGR00215 147 PFEKAFYQKKNVPCRFV---GHPLLDAIPLYKPDRK---SAREKLGIDHNGETLALLPGSRGSE-------VEK--L-FP 210 (385)
T ss_pred CCcHHHHHhcCCCEEEE---CCchhhhccccCCCHH---HHHHHcCCCCCCCEEEEECCCCHHH-------HHH--h-HH
Confidence 00011233333221100 01100 0100000111 1223456543 46777777543321 011 1 34
Q ss_pred HHHHHHHHhhhCC---C-EEEecCcccHHHHHHHHhcCC-CCcccCCHHHHHHHHHhcCEEEeC-CchHHHHHHhcCCCE
Q 012283 340 VWAEIANGLREFR---P-LFVIPHEKEREGVEDVVGDDA-SIVFITTPGQLAALINDSAGVIAT-NTAAIQLANAREKPS 413 (467)
Q Consensus 340 ~~~~Li~~L~~~~---~-Vvl~g~~~e~~~~~~i~~~~~-~~~~~~sL~el~alI~~a~lvIg~-DTG~~HLAaAlg~Pt 413 (467)
.+.+.++.|.+.. . ++.+++....+..+++.+... +.....-..+...+++.||++|+. =|..+ =|+++|+|+
T Consensus 211 ~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~aADl~V~~SGt~tl-Ea~a~G~P~ 289 (385)
T TIGR00215 211 LFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDGDARKAMFAADAALLASGTAAL-EAALIKTPM 289 (385)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECchHHHHHHhCCEEeecCCHHHH-HHHHcCCCE
Confidence 5555667776543 1 233344334444555544331 111111113556799999999986 44455 889999999
Q ss_pred EEEeCCCCCCCccc-------cCCCCCceEeecCC---CCCC-CCCCHHHHHHHHHHHHHhh
Q 012283 414 IALFSSELKGRLFV-------PNAEEKKCTVISSR---TGKL-IDTPVEAVLNAMQIFNESL 464 (467)
Q Consensus 414 VaLFg~t~p~~~~~-------P~~~~~~c~i~~~~---~~cm-~~Is~e~V~~ai~~ll~~~ 464 (467)
|.+|..+ |...|. |+.+..+ ++.+. ...+ .+.+++.+.+++.+++...
T Consensus 290 Vv~yk~~-pl~~~~~~~~~~~~~~~~~n--il~~~~~~pel~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 290 VVGYRMK-PLTFLIARRLVKTDYISLPN--ILANRLLVPELLQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred EEEEcCC-HHHHHHHHHHHcCCeeeccH--HhcCCccchhhcCCCCCHHHHHHHHHHHhcCC
Confidence 9999865 221110 1101001 01110 1222 4679999999999888643
No 43
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=96.25 E-value=1.1 Score=44.54 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhCC---CEEEec-CcccHHHHHHH---HhcC---CCCcccCCHHHHHHHHHhcCEEEeCCc------h
Q 012283 338 IQVWAEIANGLREFR---PLFVIP-HEKEREGVEDV---VGDD---ASIVFITTPGQLAALINDSAGVIATNT------A 401 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g-~~~e~~~~~~i---~~~~---~~~~~~~sL~el~alI~~a~lvIg~DT------G 401 (467)
.+.+.++++.|.+.+ .+++.| ++.+....+.+ .... .++.+.....++..+++.||++|.+-+ .
T Consensus 200 ~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~ 279 (355)
T cd03819 200 QEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGR 279 (355)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCch
Confidence 567788888887643 244444 43333332222 2221 223333336789999999999998862 3
Q ss_pred HHHHHHhcCCCEEEE
Q 012283 402 AIQLANAREKPSIAL 416 (467)
Q Consensus 402 ~~HLAaAlg~PtVaL 416 (467)
.+-=|.|.|+|+|+-
T Consensus 280 ~l~EA~a~G~PvI~~ 294 (355)
T cd03819 280 TAVEAQAMGRPVIAS 294 (355)
T ss_pred HHHHHHhcCCCEEEc
Confidence 566789999999974
No 44
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.06 E-value=1.6 Score=43.86 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhhCC--CEEEecCcccHHHHHHHHhcCC---CCcccCCHHHHHHHHHhcCEEEeCC-----chHHHHHH
Q 012283 338 IQVWAEIANGLREFR--PLFVIPHEKEREGVEDVVGDDA---SIVFITTPGQLAALINDSAGVIATN-----TAAIQLAN 407 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~--~Vvl~g~~~e~~~~~~i~~~~~---~~~~~~sL~el~alI~~a~lvIg~D-----TG~~HLAa 407 (467)
.+...+.+..+.++. .+++.|...+.+..++...... ++.+.....++..+++.||++|.+- ...+-=|.
T Consensus 212 ~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAm 291 (371)
T cd04962 212 IDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAM 291 (371)
T ss_pred HHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHH
Confidence 455566666665543 3555555555555655554432 2333334468899999999999775 34677788
Q ss_pred hcCCCEEEE
Q 012283 408 AREKPSIAL 416 (467)
Q Consensus 408 Alg~PtVaL 416 (467)
+.|+|+|+-
T Consensus 292 a~g~PvI~s 300 (371)
T cd04962 292 ACGVPVVAS 300 (371)
T ss_pred HcCCCEEEe
Confidence 999999983
No 45
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=95.92 E-value=0.16 Score=51.97 Aligned_cols=308 Identities=13% Similarity=0.135 Sum_probs=151.3
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhh-hhcCCCCCEEEEecCCCCCCCh----HHHHHHHH
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQT-FELNKNVRWANVYDLDDDWPEP----AEYTDILG 196 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l-~~~~p~Id~ii~~~~~~~~~~~----~~~~~l~~ 196 (467)
.+||.|+--..=||.+- .-++++||++||++++.=+..+..+.- ++..=...++-+.-.-.-++.+ ....++++
T Consensus 1 ~~ki~i~AGE~SGDllG-a~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~ 79 (381)
T COG0763 1 MLKIALSAGEASGDLLG-AGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVR 79 (381)
T ss_pred CceEEEEecccchhhHH-HHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 36888888888899765 568999999999999888887654321 1111111111000000000111 22234455
Q ss_pred HhHhCCCcEEEEcccCCchHHH--HHHHhCCCee-EeccCCCCCccccccccceeecCCccccccchhhHHH--------
Q 012283 197 VMKNRYYDMVLSTKLAGLGHAA--FLFMTTARDR-VSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYE-------- 265 (467)
Q Consensus 197 ~Lr~~~yDlvI~l~~~~~~~~l--l~~l~gak~r-iG~~~~~~~~~~~~~~~t~~i~~~~~~~~~~~~h~~~-------- 265 (467)
.+...+.|++|-....++...+ -.+-.|.+.+ |=|..+. -|-|+ ..+. ......++
T Consensus 80 ~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~Ps--VWAWr--------~~Ra---~~i~~~~D~lLailPF 146 (381)
T COG0763 80 YILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPS--VWAWR--------PKRA---VKIAKYVDHLLAILPF 146 (381)
T ss_pred HHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcc--eeeec--------hhhH---HHHHHHhhHeeeecCC
Confidence 5667899998877754554443 3455553322 3344322 11111 0000 00111122
Q ss_pred --HHHHHcCCCCCCCCCCCCCCc-eeecCHHHHHHHHHHHHHcCCC-CCcEEEEecCCCCccccccCCCCCCCCCCHHHH
Q 012283 266 --QMVDWLGRPFRSVPRHPVPPL-RVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVW 341 (467)
Q Consensus 266 --~lL~~Lgi~~~~v~~~~~p~~-~l~l~~~~~~~a~~~l~~~~l~-~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~ 341 (467)
.+.+..|++..-+. .|-. ++.+. .+++.++ ++++++ +++++++-||+-.+ +.+ +. .+-|
T Consensus 147 E~~~y~k~g~~~~yVG---Hpl~d~i~~~-~~r~~ar---~~l~~~~~~~~lalLPGSR~s--------EI~-rl-~~~f 209 (381)
T COG0763 147 EPAFYDKFGLPCTYVG---HPLADEIPLL-PDREAAR---EKLGIDADEKTLALLPGSRRS--------EIR-RL-LPPF 209 (381)
T ss_pred CHHHHHhcCCCeEEeC---Chhhhhcccc-ccHHHHH---HHhCCCCCCCeEEEecCCcHH--------HHH-HH-HHHH
Confidence 24455565422111 1100 11111 1222233 344544 35799999965443 333 23 5678
Q ss_pred HHHHHHhhhCC---CE-EEecCcccHHHHHHHHhcCC-CCcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEE
Q 012283 342 AEIANGLREFR---PL-FVIPHEKEREGVEDVVGDDA-SIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIAL 416 (467)
Q Consensus 342 ~~Li~~L~~~~---~V-vl~g~~~e~~~~~~i~~~~~-~~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaL 416 (467)
.+.++.|.++. .+ +-...+..+...++...... .......=.+.-..+..||+.+..-.-..==++..|+|+|+-
T Consensus 210 ~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aSGT~tLE~aL~g~P~Vv~ 289 (381)
T COG0763 210 VQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAASGTATLEAALAGTPMVVA 289 (381)
T ss_pred HHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhccHHHHHHHHhCCCEEEE
Confidence 99999998664 23 33333333333333332221 111111224556678888887765443444466789999999
Q ss_pred eCCCCCCCcc-------ccCCCCCce----EeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 417 FSSELKGRLF-------VPNAEEKKC----TVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 417 Fg~t~p~~~~-------~P~~~~~~c----~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
|-.. +..+| .|+.+-.+. .++..--+ .+.+++.+.++++.++..
T Consensus 290 Yk~~-~it~~iak~lvk~~yisLpNIi~~~~ivPEliq--~~~~pe~la~~l~~ll~~ 344 (381)
T COG0763 290 YKVK-PITYFIAKRLVKLPYVSLPNILAGREIVPELIQ--EDCTPENLARALEELLLN 344 (381)
T ss_pred Eecc-HHHHHHHHHhccCCcccchHHhcCCccchHHHh--hhcCHHHHHHHHHHHhcC
Confidence 9866 22221 133222121 01110001 456788888888877653
No 46
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=95.56 E-value=2.5 Score=41.02 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCCC---CcccCCHHHHHHHHHhcCEEEeCC-----chHHHHH
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDAS---IVFITTPGQLAALINDSAGVIATN-----TAAIQLA 406 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~~---~~~~~sL~el~alI~~a~lvIg~D-----TG~~HLA 406 (467)
.+.+.+.++.+.+.. .+++.|...+.+..++....... +.....-.++..+++.||++|.+- ...+.=|
T Consensus 193 ~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea 272 (348)
T cd03820 193 FDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEA 272 (348)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHHH
Confidence 566777777776543 35566666666666554443321 222222588999999999999886 5678889
Q ss_pred HhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 407 NAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 407 aAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
.+.|+|+|+-=...... ..... + ....++ ..-+++++.+++.+++..
T Consensus 273 ~a~G~Pvi~~~~~~~~~-~~~~~-~-~~g~~~-------~~~~~~~~~~~i~~ll~~ 319 (348)
T cd03820 273 MAFGLPVISFDCPTGPS-EIIED-G-VNGLLV-------PNGDVEALAEALLRLMED 319 (348)
T ss_pred HHcCCCEEEecCCCchH-hhhcc-C-cceEEe-------CCCCHHHHHHHHHHHHcC
Confidence 99999999742222111 11111 1 111222 233578888888887654
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.51 E-value=2.8 Score=41.23 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhCC-CEEEecCcccHHHHHHHHhcCCCCcc--cCCHHHHHHHHHhcCEEEeCCc----h--HHHHHHh
Q 012283 338 IQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVF--ITTPGQLAALINDSAGVIATNT----A--AIQLANA 408 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~-~Vvl~g~~~e~~~~~~i~~~~~~~~~--~~sL~el~alI~~a~lvIg~DT----G--~~HLAaA 408 (467)
.+.+.+.+..+.+.. .++++|...+............++.+ ..+-.++..+++.||++|.+.. . .+-=|.|
T Consensus 206 ~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a 285 (359)
T cd03823 206 VDLLLEAFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALA 285 (359)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHH
Confidence 456677777776533 35555554443333222222223333 3345899999999999997642 2 3556889
Q ss_pred cCCCEEE
Q 012283 409 REKPSIA 415 (467)
Q Consensus 409 lg~PtVa 415 (467)
.|+|+|+
T Consensus 286 ~G~Pvi~ 292 (359)
T cd03823 286 AGVPVIA 292 (359)
T ss_pred CCCCEEE
Confidence 9999997
No 48
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=95.45 E-value=1.7 Score=42.37 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcC---CCCcc--cCCHHHHHHHHHhcCEEEeCC-----chHHH
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVF--ITTPGQLAALINDSAGVIATN-----TAAIQ 404 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~---~~~~~--~~sL~el~alI~~a~lvIg~D-----TG~~H 404 (467)
.+.+.+.+..+.+++ .+++.|+..+.+..+++.... .++.+ ..+-.|+..+++.||++|.+- +..+.
T Consensus 214 ~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~ 293 (374)
T cd03801 214 VDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLL 293 (374)
T ss_pred HHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHH
Confidence 456667777766653 356667666666665554222 22333 344599999999999999654 34567
Q ss_pred HHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 405 LANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 405 LAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
=|.+.|+|+|+-=.+... ... .. + ....++ ..-+++++.+++.+++..
T Consensus 294 Ea~~~g~pvI~~~~~~~~-~~~-~~-~-~~g~~~-------~~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 294 EAMAAGLPVVASDVGGIP-EVV-ED-G-ETGLLV-------PPGDPEALAEAILRLLDD 341 (374)
T ss_pred HHHHcCCcEEEeCCCChh-HHh-cC-C-cceEEe-------CCCCHHHHHHHHHHHHcC
Confidence 789999999985432211 111 11 1 111222 223478888888776543
No 49
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=95.41 E-value=0.47 Score=48.57 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=59.4
Q ss_pred CcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCCCEEEecCcccHHHHHHHHhcCCCCcccCCHHHHHHHH
Q 012283 310 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALI 389 (467)
Q Consensus 310 ~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~~Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL~el~alI 389 (467)
++.|++-|||-++. .++.. .-+.+.++.|.++..++++.+..+.+.+++..+......+. .+...++
T Consensus 167 ~~~I~llPGSR~~E--------i~~ll--P~~~~aa~~L~~~~~~~~i~~a~~~~~i~~~~~~~~~~~~~---~~~~~~m 233 (347)
T PRK14089 167 EGTIAFMPGSRKSE--------IKRLM--PIFKELAKKLEGKEKILVVPSFFKGKDLKEIYGDISEFEIS---YDTHKAL 233 (347)
T ss_pred CCEEEEECCCCHHH--------HHHHH--HHHHHHHHHHhhcCcEEEEeCCCcHHHHHHHHhcCCCcEEe---ccHHHHH
Confidence 57899998654432 11122 34557777777654344444444445555544322211112 3567889
Q ss_pred HhcCEEEeCCchHHHHHHhcCCCEEEEeCCC
Q 012283 390 NDSAGVIATNTAAIQLANAREKPSIALFSSE 420 (467)
Q Consensus 390 ~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t 420 (467)
+.||++|+.-.-..==++.+|+|+|..|-.+
T Consensus 234 ~~aDlal~~SGT~TLE~al~g~P~Vv~Yk~~ 264 (347)
T PRK14089 234 LEAEFAFICSGTATLEAALIGTPFVLAYKAK 264 (347)
T ss_pred HhhhHHHhcCcHHHHHHHHhCCCEEEEEeCC
Confidence 9999998875444446788999999998755
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=95.21 E-value=3.2 Score=40.91 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCC---CCcc--cCCHHHHHHHHHhcCEEEeCCc-----hHHH
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SIVF--ITTPGQLAALINDSAGVIATNT-----AAIQ 404 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~---~~~~--~~sL~el~alI~~a~lvIg~DT-----G~~H 404 (467)
.+...+++..+.+++ .+++.|+..+.+..++...... ++.+ ..+-.++..+++.||++|.+.. ..+-
T Consensus 217 ~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~ 296 (374)
T cd03817 217 IDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLL 296 (374)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHH
Confidence 567777777777653 3555565555555555543332 2322 3456899999999999996642 4566
Q ss_pred HHHhcCCCEEEEe
Q 012283 405 LANAREKPSIALF 417 (467)
Q Consensus 405 LAaAlg~PtVaLF 417 (467)
=|.+.|+|+|+--
T Consensus 297 Ea~~~g~PvI~~~ 309 (374)
T cd03817 297 EAMAAGLPVVAVD 309 (374)
T ss_pred HHHHcCCcEEEeC
Confidence 7889999999853
No 51
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=95.06 E-value=4.1 Score=40.55 Aligned_cols=116 Identities=12% Similarity=0.102 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCC---CCcccCCHHHHHHHHHhcCEEEeCC-----chHHHHH
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SIVFITTPGQLAALINDSAGVIATN-----TAAIQLA 406 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~---~~~~~~sL~el~alI~~a~lvIg~D-----TG~~HLA 406 (467)
.+...+.+..|.+++ .++++|...+.+..++...... ++.+.....++..+++.||++|.+. ...+-=|
T Consensus 207 ~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEA 286 (358)
T cd03812 207 HEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEA 286 (358)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHH
Confidence 567778888887654 3455554444444444443222 2222222567889999999999764 2334557
Q ss_pred HhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 012283 407 NAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNESLA 465 (467)
Q Consensus 407 aAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~~~ 465 (467)
-|.|+|+|+--.+..+. .. .. .+.. +...=+++++.+++.+++..+.
T Consensus 287 ma~G~PvI~s~~~~~~~-~i----~~-~~~~------~~~~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 287 QASGLPCILSDTITKEV-DL----TD-LVKF------LSLDESPEIWAEEILKLKSEDR 333 (358)
T ss_pred HHhCCCEEEEcCCchhh-hh----cc-CccE------EeCCCCHHHHHHHHHHHHhCcc
Confidence 79999999854433211 11 11 1111 1122357999999999887553
No 52
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=95.05 E-value=3.1 Score=44.09 Aligned_cols=101 Identities=13% Similarity=0.183 Sum_probs=55.5
Q ss_pred CEEEecCcccHHHHHHHHhcCCCCcc--cCCHHHHHHHHHhcCEEEeCCc-----hHHHHHHhcCCCEEEEeCCCCCCCc
Q 012283 353 PLFVIPHEKEREGVEDVVGDDASIVF--ITTPGQLAALINDSAGVIATNT-----AAIQLANAREKPSIALFSSELKGRL 425 (467)
Q Consensus 353 ~Vvl~g~~~e~~~~~~i~~~~~~~~~--~~sL~el~alI~~a~lvIg~DT-----G~~HLAaAlg~PtVaLFg~t~p~~~ 425 (467)
.+++.|...+++.++++.... ++.+ ..+-.|+..+++.||++|.+-. ..+==|.|.|+|+|+--....+. .
T Consensus 292 ~l~ivG~G~~~~~l~~~~~~~-~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~e-i 369 (465)
T PLN02871 292 RLAFVGDGPYREELEKMFAGT-PTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAGGIPD-I 369 (465)
T ss_pred EEEEEeCChHHHHHHHHhccC-CeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCCcHh-h
Confidence 355555545555555554432 2333 3345899999999999997642 12335789999999643222111 1
Q ss_pred ccc-CCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 426 FVP-NAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 426 ~~P-~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
... ..+..+. ++ ..-+++++.+++.++++.
T Consensus 370 v~~~~~~~~G~-lv-------~~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 370 IPPDQEGKTGF-LY-------TPGDVDDCVEKLETLLAD 400 (465)
T ss_pred hhcCCCCCceE-Ee-------CCCCHHHHHHHHHHHHhC
Confidence 101 0011121 11 223678888888877753
No 53
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=94.54 E-value=4.2 Score=40.33 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcC---CCCcc--cCCHHHHHHHHHhcCEEEeCCch--------
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVF--ITTPGQLAALINDSAGVIATNTA-------- 401 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~---~~~~~--~~sL~el~alI~~a~lvIg~DTG-------- 401 (467)
.+.+.+.++.+.+++ .+.++|...+.+..++..... .++.+ ..+-.++..+++.||++|.+-..
T Consensus 194 ~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~ 273 (355)
T cd03799 194 LDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREG 273 (355)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccC
Confidence 567777777777653 255556555555555554433 22332 34568999999999999986332
Q ss_pred ---HHHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 402 ---AIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 402 ---~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
.+==|.|.|+|+|+--.+.. ...... +...+ ++ ..=+++++.+++.+++..
T Consensus 274 ~~~~~~Ea~a~G~Pvi~~~~~~~-~~~i~~--~~~g~-~~-------~~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 274 LPVVLMEAMAMGLPVISTDVSGI-PELVED--GETGL-LV-------PPGDPEALADAIERLLDD 327 (355)
T ss_pred ccHHHHHHHHcCCCEEecCCCCc-chhhhC--CCceE-Ee-------CCCCHHHHHHHHHHHHhC
Confidence 34558899999998422221 111111 11111 11 122688888888877653
No 54
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=93.76 E-value=3 Score=42.97 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCEEEeCCc-hHHHHHHhcCCCEEEEe
Q 012283 383 GQLAALINDSAGVIATNT-AAIQLANAREKPSIALF 417 (467)
Q Consensus 383 ~el~alI~~a~lvIg~DT-G~~HLAaAlg~PtVaLF 417 (467)
.++..+++.||++|+.-. +.+.=|.|.|+|+|+.-
T Consensus 274 ~~~~~l~~aaDv~V~~~g~~ti~EAma~g~PvI~~~ 309 (382)
T PLN02605 274 TNMEEWMGACDCIITKAGPGTIAEALIRGLPIILNG 309 (382)
T ss_pred ccHHHHHHhCCEEEECCCcchHHHHHHcCCCEEEec
Confidence 589999999999998433 34467889999999964
No 55
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=93.26 E-value=8.8 Score=37.47 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCC---CCcc--cCCHHHHHHHHHhcCEEEeCC-----chHHH
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SIVF--ITTPGQLAALINDSAGVIATN-----TAAIQ 404 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~---~~~~--~~sL~el~alI~~a~lvIg~D-----TG~~H 404 (467)
.+.+.+.++.+.+++ .+++.|...+.+..++..+... ++.. ..+-.++..+++.||++|.+- +..+.
T Consensus 217 ~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~ 296 (377)
T cd03798 217 IDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLL 296 (377)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHH
Confidence 567777888877653 2455565555555555544222 2222 456689999999999999654 45678
Q ss_pred HHHhcCCCEEEE
Q 012283 405 LANAREKPSIAL 416 (467)
Q Consensus 405 LAaAlg~PtVaL 416 (467)
=|.+.|+|+|+-
T Consensus 297 Ea~~~G~pvI~~ 308 (377)
T cd03798 297 EAMACGLPVVAT 308 (377)
T ss_pred HHHhcCCCEEEe
Confidence 899999999973
No 56
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=93.24 E-value=8 Score=38.04 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=45.4
Q ss_pred HHHHHHhhhCC-CEEEecCcccHHHHHHHH-hc---CCCCcc--cCCHHHHHHHHHhcCEEEeCC----c-h-HHHHHHh
Q 012283 342 AEIANGLREFR-PLFVIPHEKEREGVEDVV-GD---DASIVF--ITTPGQLAALINDSAGVIATN----T-A-AIQLANA 408 (467)
Q Consensus 342 ~~Li~~L~~~~-~Vvl~g~~~e~~~~~~i~-~~---~~~~~~--~~sL~el~alI~~a~lvIg~D----T-G-~~HLAaA 408 (467)
..+++.+.+.+ .+++.|...+.+..+... .. ..++.+ ..+-.++..+++.+|++|-+- + | .+-=|-|
T Consensus 187 ~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma 266 (335)
T cd03802 187 HLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMA 266 (335)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHh
Confidence 34555544444 344455444443333322 22 223333 345578899999999999653 2 2 2444889
Q ss_pred cCCCEEEEeCCC
Q 012283 409 REKPSIALFSSE 420 (467)
Q Consensus 409 lg~PtVaLFg~t 420 (467)
.|+|+|+--.+.
T Consensus 267 ~G~PvI~~~~~~ 278 (335)
T cd03802 267 CGTPVIAFRRGA 278 (335)
T ss_pred cCCCEEEeCCCC
Confidence 999999764433
No 57
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=92.94 E-value=10 Score=37.34 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHhhhC-C-CEEEecCcccHHHHHHHHh--cCCCCcc--cCCHHHHHHHHHhcCEEEeCCc--h------H
Q 012283 337 PIQVWAEIANGLREF-R-PLFVIPHEKEREGVEDVVG--DDASIVF--ITTPGQLAALINDSAGVIATNT--A------A 402 (467)
Q Consensus 337 P~e~~~~Li~~L~~~-~-~Vvl~g~~~e~~~~~~i~~--~~~~~~~--~~sL~el~alI~~a~lvIg~DT--G------~ 402 (467)
..+.+.+.++.+.+. . .++++|...+.+..++... ..+++.. ..+-.++..+++.||++|.+-. + +
T Consensus 234 ~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p 313 (394)
T cd03794 234 GLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSP 313 (394)
T ss_pred CHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCc
Confidence 367788888888765 3 3556666555555555322 2233333 3456899999999999985422 1 1
Q ss_pred --HHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 012283 403 --IQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNE 462 (467)
Q Consensus 403 --~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~ 462 (467)
+-=|.+.|+|+|+--.+.... .... +.... +...=+++++.+++.+++.
T Consensus 314 ~~~~Ea~~~G~pvi~~~~~~~~~-~~~~--~~~g~--------~~~~~~~~~l~~~i~~~~~ 364 (394)
T cd03794 314 SKLFEYMAAGKPVLASVDGESAE-LVEE--AGAGL--------VVPPGDPEALAAAILELLD 364 (394)
T ss_pred hHHHHHHHCCCcEEEecCCCchh-hhcc--CCcce--------EeCCCCHHHHHHHHHHHHh
Confidence 356888999999864443211 1111 11111 1122267888888888774
No 58
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=92.93 E-value=0.24 Score=50.61 Aligned_cols=114 Identities=14% Similarity=0.159 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhhC-C-CEEEecC--cccHHHHHHHHhcCCCCcc--cCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCC
Q 012283 338 IQVWAEIANGLREF-R-PLFVIPH--EKEREGVEDVVGDDASIVF--ITTPGQLAALINDSAGVIATNTAAIQLANAREK 411 (467)
Q Consensus 338 ~e~~~~Li~~L~~~-~-~Vvl~g~--~~e~~~~~~i~~~~~~~~~--~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~ 411 (467)
.+.+.++++.|.+. + ++++..+ +.-...+.+....+.++.. .+.-.++.+++++|+++||+-||..==|..+|+
T Consensus 199 ~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~vvgdSsGI~eEa~~lg~ 278 (346)
T PF02350_consen 199 LEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADLVVGDSSGIQEEAPSLGK 278 (346)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESEEEESSHHHHHHGGGGT-
T ss_pred HHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceEEEEcCccHHHHHHHhCC
Confidence 56778888888876 4 4555555 3334444443333345444 345589999999999999988855559999999
Q ss_pred CEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 412 PSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 412 PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
|+|.|=-.++....- =. + .+ ++ -..+.++|.+++++.+..
T Consensus 279 P~v~iR~~geRqe~r-~~-~-~n--vl-------v~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 279 PVVNIRDSGERQEGR-ER-G-SN--VL-------VGTDPEAIIQAIEKALSD 318 (346)
T ss_dssp -EEECSSS-S-HHHH-HT-T-SE--EE-------ETSSHHHHHHHHHHHHH-
T ss_pred eEEEecCCCCCHHHH-hh-c-ce--EE-------eCCCHHHHHHHHHHHHhC
Confidence 999994333211110 01 1 12 11 135799999999998864
No 59
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=92.27 E-value=13 Score=36.92 Aligned_cols=79 Identities=16% Similarity=0.092 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhhCCCEEEecCc-ccHHHHHHHHh---cCCCCcc--cCCHHHHHHHHHhcCEEEeCCch------HHHH
Q 012283 338 IQVWAEIANGLREFRPLFVIPHE-KEREGVEDVVG---DDASIVF--ITTPGQLAALINDSAGVIATNTA------AIQL 405 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~~Vvl~g~~-~e~~~~~~i~~---~~~~~~~--~~sL~el~alI~~a~lvIg~DTG------~~HL 405 (467)
.+...+.+..+..+..++++|+. .+.+..+.+.+ ...++.+ ..+-.++..+++.|+++|.+... .+-=
T Consensus 208 ~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~E 287 (363)
T cd04955 208 IDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLE 287 (363)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHH
Confidence 44555555555442234445443 33334344432 2223333 34557899999999999887654 4677
Q ss_pred HHhcCCCEEEE
Q 012283 406 ANAREKPSIAL 416 (467)
Q Consensus 406 AaAlg~PtVaL 416 (467)
|.|.|+|+|+-
T Consensus 288 Ama~G~PvI~s 298 (363)
T cd04955 288 AMAYGCPVLAS 298 (363)
T ss_pred HHHcCCCEEEe
Confidence 88999999985
No 60
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=91.60 E-value=13 Score=37.58 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=62.3
Q ss_pred HHHHHHHhhhC--C-CEEEecCcccHHHHHHHHhcCC---CCcc---cC-CHHHHHHHHHhcCEEEeCCc-----hHHHH
Q 012283 341 WAEIANGLREF--R-PLFVIPHEKEREGVEDVVGDDA---SIVF---IT-TPGQLAALINDSAGVIATNT-----AAIQL 405 (467)
Q Consensus 341 ~~~Li~~L~~~--~-~Vvl~g~~~e~~~~~~i~~~~~---~~~~---~~-sL~el~alI~~a~lvIg~DT-----G~~HL 405 (467)
+..+++.+... . .++++|...+++.++++.+... ++.+ .. .-.++...++.||++|.+.. ..+-=
T Consensus 197 ~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lE 276 (359)
T PRK09922 197 VKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLE 276 (359)
T ss_pred HHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHH
Confidence 33444444332 2 3555555555666666655432 2332 12 34778899999999997643 33444
Q ss_pred HHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHhh
Q 012283 406 ANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNESL 464 (467)
Q Consensus 406 AaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~~ 464 (467)
|-|.|+|+|+-=........... +..+ .+ +..-+++++.+++.+++...
T Consensus 277 Ama~G~Pvv~s~~~~g~~eiv~~--~~~G-~l-------v~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 277 AMSYGIPCISSDCMSGPRDIIKP--GLNG-EL-------YTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred HHHcCCCEEEeCCCCChHHHccC--CCce-EE-------ECCCCHHHHHHHHHHHHhCc
Confidence 88999999985301111111100 1111 11 12347888888888877643
No 61
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=88.88 E-value=2.4 Score=43.73 Aligned_cols=304 Identities=9% Similarity=-0.025 Sum_probs=145.6
Q ss_pred cCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCC--------C-CChHHH---------
Q 012283 130 SGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD--------W-PEPAEY--------- 191 (467)
Q Consensus 130 ~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~--------~-~~~~~~--------- 191 (467)
.+..||+-=..++.++|+++ |.+|++++.+.+.+.++... + +++.++.... + ......
T Consensus 3 ~p~~Ghv~P~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~~G-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (392)
T TIGR01426 3 IPAHGHVNPTLGVVEELVAR--GHRVTYATTEEFAERVEAAG-A-EFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAE 78 (392)
T ss_pred CCccccccccHHHHHHHHhC--CCeEEEEeCHHHHHHHHHcC-C-EEEecCCcCccccccccccCcchHHHHHHHHHHHH
Confidence 46789999999999999998 89999999999988887653 2 1333332110 0 011111
Q ss_pred ---HHHHHHhHhCCCcEEEEcccCCchHHHHHHHhCCCeeEeccCCCCCccccccc--ccee-ecCCcc-c-cccchhhH
Q 012283 192 ---TDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLL--LSET-FTAESM-N-LSERGYNM 263 (467)
Q Consensus 192 ---~~l~~~Lr~~~yDlvI~l~~~~~~~~ll~~l~gak~riG~~~~~~~~~~~~~~--~t~~-i~~~~~-~-~~~~~~h~ 263 (467)
-.+...++..++|+||.-.. ..-....+...|++...-.............. +... ...... . ........
T Consensus 79 ~~~~~l~~~~~~~~pDlVi~d~~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (392)
T TIGR01426 79 DVLPQLEEAYKGDRPDLIVYDIA-SWTGRLLARKWDVPVISSFPTFAANEEFEEMVSPAGEGSAEEGAIAERGLAEYVAR 157 (392)
T ss_pred HHHHHHHHHhcCCCCCEEEECCc-cHHHHHHHHHhCCCEEEEehhhcccccccccccccchhhhhhhccccchhHHHHHH
Confidence 11233345668999987553 23445567778888542211000000000000 0000 000000 0 00001122
Q ss_pred HHHHHHHcCCCCCCCCC--CCCCCceeecCHHHHHHH---------------------HHHHHHcCCCCCcEEEEecCCC
Q 012283 264 YEQMVDWLGRPFRSVPR--HPVPPLRVSISRRLKEVV---------------------AEKYKNAGAEQGKYIVIHGIES 320 (467)
Q Consensus 264 ~~~lL~~Lgi~~~~v~~--~~~p~~~l~l~~~~~~~a---------------------~~~l~~~~l~~~~~I~i~pgas 320 (467)
..++.+.+|+....... .......+...+...... ..+.. ....++.|.+..|+.
T Consensus 158 ~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~--~~~~~~~v~vs~Gs~ 235 (392)
T TIGR01426 158 LSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRKEDGSWER--PGDGRPVVLISLGTV 235 (392)
T ss_pred HHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECCCCCCccccCCCCC--CCCCCCEEEEecCcc
Confidence 22345556653110000 000000111111110000 00000 012246677765432
Q ss_pred CccccccCCCCCCCCCCHHHHHHHHHHhhhCC-C-EEEecCcccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeC
Q 012283 321 DSKASMQSRGDTDSLLPIQVWAEIANGLREFR-P-LFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIAT 398 (467)
Q Consensus 321 ~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~-Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~ 398 (467)
. .+..+.+.++++.+.+.+ . |+..|...+.+..+ ..-.++....-+.+ ..++.+|+++|+.
T Consensus 236 ~-------------~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~---~~~~~v~~~~~~p~-~~ll~~~~~~I~h 298 (392)
T TIGR01426 236 F-------------NNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLG---ELPPNVEVRQWVPQ-LEILKKADAFITH 298 (392)
T ss_pred C-------------CCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhc---cCCCCeEEeCCCCH-HHHHhhCCEEEEC
Confidence 1 133457778888887765 3 44444333333222 21223322111222 3678999999998
Q ss_pred Cc-hHHHHHHhcCCCEEEEeCCCCCCCccc-cCCCCCce-EeecCCCCCCCCCCHHHHHHHHHHHHHhh
Q 012283 399 NT-AAIQLANAREKPSIALFSSELKGRLFV-PNAEEKKC-TVISSRTGKLIDTPVEAVLNAMQIFNESL 464 (467)
Q Consensus 399 DT-G~~HLAaAlg~PtVaLFg~t~p~~~~~-P~~~~~~c-~i~~~~~~cm~~Is~e~V~~ai~~ll~~~ 464 (467)
-. |.++=|.+.|+|.|++....+ ...++ -. ....+ ..+. ..+++++++.+++++++...
T Consensus 299 gG~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~l-~~~g~g~~l~-----~~~~~~~~l~~ai~~~l~~~ 360 (392)
T TIGR01426 299 GGMNSTMEALFNGVPMVAVPQGAD-QPMTARRI-AELGLGRHLP-----PEEVTAEKLREAVLAVLSDP 360 (392)
T ss_pred CCchHHHHHHHhCCCEEecCCccc-HHHHHHHH-HHCCCEEEec-----cccCCHHHHHHHHHHHhcCH
Confidence 76 569999999999999976543 11110 00 00011 1111 13678999999999887643
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.28 E-value=28 Score=34.35 Aligned_cols=115 Identities=18% Similarity=0.129 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhhCCCEEEecCcccHHHHHHHHhcC---CCCcc--cCCHHHHHHHHHhcCEEEeCC-----c-hH-HHH
Q 012283 338 IQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDD---ASIVF--ITTPGQLAALINDSAGVIATN-----T-AA-IQL 405 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~~Vvl~g~~~e~~~~~~i~~~~---~~~~~--~~sL~el~alI~~a~lvIg~D-----T-G~-~HL 405 (467)
.+.+.+.++.+. +..++++|...+.+..+++.... .++.+ ..+-.++..+++.||++|-+. + |. +-=
T Consensus 206 ~~~li~a~~~l~-~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~E 284 (357)
T cd03795 206 LDVLLEAAAALP-DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLE 284 (357)
T ss_pred HHHHHHHHHhcc-CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHH
Confidence 455666666665 32355555545555555554222 23333 345678999999999999653 2 22 333
Q ss_pred HHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 406 ANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 406 AaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
|.+.|+|+|+-=.+.. ...+... +...+ + ...=+++++.+++.+++..
T Consensus 285 a~~~g~Pvi~~~~~~~-~~~i~~~-~~~g~-~-------~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 285 AMAFGKPVISTEIGTG-GSYVNLH-GVTGL-V-------VPPGDPAALAEAIRRLLED 332 (357)
T ss_pred HHHcCCCEEecCCCCc-hhHHhhC-CCceE-E-------eCCCCHHHHHHHHHHHHHC
Confidence 7789999997311110 0111100 11111 1 1223688899998888754
No 63
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=87.90 E-value=36 Score=35.21 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCC
Q 012283 379 ITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSEL 421 (467)
Q Consensus 379 ~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~ 421 (467)
.+.-.++..|+++|-+++|.-+|..==|..+|+|+++|=-.|.
T Consensus 269 pl~~~~f~~L~~~a~~iltDSGgiqEEAp~lg~Pvl~lR~~TE 311 (383)
T COG0381 269 PLGYLDFHNLMKNAFLILTDSGGIQEEAPSLGKPVLVLRDTTE 311 (383)
T ss_pred CcchHHHHHHHHhceEEEecCCchhhhHHhcCCcEEeeccCCC
Confidence 4566899999999999999999999999999999999988774
No 64
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=87.61 E-value=38 Score=35.21 Aligned_cols=113 Identities=8% Similarity=0.020 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhhC--------C-CEEEecCcccHHHHHHHHhcCC--CCcc---cCCHHHHHHHHHhcCEEEeCCc---
Q 012283 338 IQVWAEIANGLREF--------R-PLFVIPHEKEREGVEDVVGDDA--SIVF---ITTPGQLAALINDSAGVIATNT--- 400 (467)
Q Consensus 338 ~e~~~~Li~~L~~~--------~-~Vvl~g~~~e~~~~~~i~~~~~--~~~~---~~sL~el~alI~~a~lvIg~DT--- 400 (467)
.+...+.++.|.+. . .++++|...+++.+++..+..+ +.+. ..+-.++..+++.||++|....
T Consensus 247 ~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~ 326 (415)
T cd03816 247 FGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSS 326 (415)
T ss_pred HHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEcccccc
Confidence 45666666666531 1 2444454445555555554432 3332 2467999999999999995321
Q ss_pred h-----HHHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 401 A-----AIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 401 G-----~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
| .+-=|-|.|+|+|+-=.+..+ ..-.. +..+. +. + +++++.+++.+++..
T Consensus 327 ~~~~p~~~~Eama~G~PVI~s~~~~~~-eiv~~--~~~G~--------lv-~-d~~~la~~i~~ll~~ 381 (415)
T cd03816 327 GLDLPMKVVDMFGCGLPVCALDFKCID-ELVKH--GENGL--------VF-G-DSEELAEQLIDLLSN 381 (415)
T ss_pred ccCCcHHHHHHHHcCCCEEEeCCCCHH-HHhcC--CCCEE--------EE-C-CHHHHHHHHHHHHhc
Confidence 2 244567899999983222211 11100 11121 11 2 689999999888765
No 65
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=87.10 E-value=10 Score=32.38 Aligned_cols=81 Identities=12% Similarity=0.170 Sum_probs=51.9
Q ss_pred EEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCC-CCCChHHHHHHHHHhHhCC
Q 012283 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD-DWPEPAEYTDILGVMKNRY 202 (467)
Q Consensus 124 rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~-~~~~~~~~~~l~~~Lr~~~ 202 (467)
|||++.... -......++.|+++ |.++++++.....+-......+. ++.++... .........++.+.+++.+
T Consensus 1 KIl~i~~~~---~~~~~~~~~~L~~~--g~~V~ii~~~~~~~~~~~~~~i~-~~~~~~~~k~~~~~~~~~~l~k~ik~~~ 74 (139)
T PF13477_consen 1 KILLIGNTP---STFIYNLAKELKKR--GYDVHIITPRNDYEKYEIIEGIK-VIRLPSPRKSPLNYIKYFRLRKIIKKEK 74 (139)
T ss_pred CEEEEecCc---HHHHHHHHHHHHHC--CCEEEEEEcCCCchhhhHhCCeE-EEEecCCCCccHHHHHHHHHHHHhccCC
Confidence 566665543 13466789999987 78999999976654444455563 45554222 1111223557777889999
Q ss_pred CcEEEEcc
Q 012283 203 YDMVLSTK 210 (467)
Q Consensus 203 yDlvI~l~ 210 (467)
||+|..-.
T Consensus 75 ~DvIh~h~ 82 (139)
T PF13477_consen 75 PDVIHCHT 82 (139)
T ss_pred CCEEEEec
Confidence 99997655
No 66
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=86.96 E-value=3.1 Score=38.64 Aligned_cols=90 Identities=18% Similarity=0.095 Sum_probs=50.2
Q ss_pred EEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCC-chhhhhcC--CCCCEEEEecCCCCCCChHHHHHHHHHhHh
Q 012283 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASAR-GKQTFELN--KNVRWANVYDLDDDWPEPAEYTDILGVMKN 200 (467)
Q Consensus 124 rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~-~~~l~~~~--p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~ 200 (467)
+.+-++...+|++....|++++|++++|+.+|.+-+... ..+.++.. +.|.. ..++.+. .....++++.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~-~~~P~D~----~~~~~rfl~~~-- 94 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDV-QYLPLDF----PWAVRRFLDHW-- 94 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SE-EE---SS----HHHHHHHHHHH--
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEE-EEeCccC----HHHHHHHHHHh--
Confidence 678888889999999999999999999999998888754 34444432 34553 3355443 23334455544
Q ss_pred CCCcEEEEcccCCchHHHHHHH
Q 012283 201 RYYDMVLSTKLAGLGHAAFLFM 222 (467)
Q Consensus 201 ~~yDlvI~l~~~~~~~~ll~~l 222 (467)
+.|++|-+.. ...-.++..+
T Consensus 95 -~P~~~i~~Et-ElWPnll~~a 114 (186)
T PF04413_consen 95 -RPDLLIWVET-ELWPNLLREA 114 (186)
T ss_dssp ---SEEEEES-----HHHHHH-
T ss_pred -CCCEEEEEcc-ccCHHHHHHH
Confidence 5899999885 4555555433
No 67
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=85.47 E-value=39 Score=33.23 Aligned_cols=102 Identities=12% Similarity=0.121 Sum_probs=60.2
Q ss_pred CcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHh---hh-CC-CEEEecCcccHHHHHHHHhc-CCCC---cc--
Q 012283 310 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGL---RE-FR-PLFVIPHEKEREGVEDVVGD-DASI---VF-- 378 (467)
Q Consensus 310 ~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L---~~-~~-~Vvl~g~~~e~~~~~~i~~~-~~~~---~~-- 378 (467)
+++|++--|++...| .|..++-.+++..| .+ .+ .+++.-+..--+.++.+... .... ..
T Consensus 161 rq~vAVlVGg~nk~f----------~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~ 230 (329)
T COG3660 161 RQRVAVLVGGNNKAF----------VFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNN 230 (329)
T ss_pred CceEEEEecCCCCCC----------ccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCC
Confidence 667766655444331 26555544444443 34 34 56655554444444444432 3322 11
Q ss_pred -cCCHHHHHHHHHhcCEEEe-CCchHH-HHHHhcCCCEEEEeCCCC
Q 012283 379 -ITTPGQLAALINDSAGVIA-TNTAAI-QLANAREKPSIALFSSEL 421 (467)
Q Consensus 379 -~~sL~el~alI~~a~lvIg-~DTG~~-HLAaAlg~PtVaLFg~t~ 421 (467)
.++-.=..++++.||.+|+ .||=.| -=|++.|+|+.++|.+..
T Consensus 231 ~d~g~NPY~~~La~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 231 EDTGYNPYIDMLAAADYIISTADSINMCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred CCCCCCchHHHHhhcceEEEecchhhhhHHHhccCCCeEEEecCCc
Confidence 2345568899999998775 465444 458899999999998764
No 68
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=83.97 E-value=1.6 Score=38.03 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=44.5
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcC-----CCCCEEEEecCC
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN-----KNVRWANVYDLD 182 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~-----p~Id~ii~~~~~ 182 (467)
..+|||+.-.+=||.....|++..+.+..|+.++.++....+.++.... ..|=.++.++.+
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 3489999999999999999999999999999999999999888777643 345556666644
No 69
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=82.30 E-value=16 Score=37.31 Aligned_cols=269 Identities=14% Similarity=0.097 Sum_probs=105.0
Q ss_pred ccccccCCccEEEEEec--CCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHH
Q 012283 114 LPLKIRGDVRRCCCIIS--GGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEY 191 (467)
Q Consensus 114 ~~~~~r~~~~rILII~~--~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~ 191 (467)
+.+.++.+.++|++... ...+|... .+++.|++.+|+.++.|+++.... +..+.--+++.+ .++...
T Consensus 5 ~~~~~p~~~~~Ivf~~~~g~~~~dN~~--~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~------~s~~~~ 73 (369)
T PF04464_consen 5 LFKFLPKKKKKIVFESESGNKFSDNPK--ALFEYLIKNYPDYKIYWIINKKSP---ELKPKGIKVVKF------GSLKHI 73 (369)
T ss_dssp -----G-EEEEEEEEBTTTTBS-HHHH--HHHHHHHHH-TTSEEEEEESSGGG-------SS-EEEET------TSHHHH
T ss_pred ccccCcccCCEEEEEECCCCCCCCCHH--HHHHHHHhhCCCcEEEEEEcCchH---hhccCCceEEee------cHHHHH
Confidence 45566777788888876 45777655 678889999999999999998655 222222233322 122222
Q ss_pred HHHHHHhHhCCCcEEEEcccCCchH-HHHHHHh---------C-CCeeEeccCCCCCc-----cccccccceeecCCccc
Q 012283 192 TDILGVMKNRYYDMVLSTKLAGLGH-AAFLFMT---------T-ARDRVSYIYPNVNA-----AGAGLLLSETFTAESMN 255 (467)
Q Consensus 192 ~~l~~~Lr~~~yDlvI~l~~~~~~~-~ll~~l~---------g-ak~riG~~~~~~~~-----~~~~~~~t~~i~~~~~~ 255 (467)
..+.+ -..+|..+. ... ..+.... | +-.++|+....... ......++..+...
T Consensus 74 ----~~~~~--Ak~~i~~~~--~~~~~~~~~~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~~~~~~~~~~d~~~~~s--- 142 (369)
T PF04464_consen 74 ----YYLAR--AKYIISDSY--FPDLIYFKKRKNQKYIQLWHGIPLKKIGYDSPDNKNYRKNYKRNYRNYDYFIVSS--- 142 (369)
T ss_dssp ----HHHHH--EEEEEESS-----T--TS---TTSEEEE--SS--SB--GGG-S---TS-HHHHHHHTT-SEEEESS---
T ss_pred ----HHHHh--CcEEEECCC--CCcccccccCCCcEEEEecCCCcccccchhccccccchhhhhhhccCCcEEEECC---
Confidence 22222 344555431 111 0011111 1 11233443211100 00001112111110
Q ss_pred cccchhhHHHHHHHHcCCCCCCCCCCCCCCceeecCHHHHHHHHHHHHHcCCCC-CcEEEEecCCCCccccccCCC-CCC
Q 012283 256 LSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQ-GKYIVIHGIESDSKASMQSRG-DTD 333 (467)
Q Consensus 256 ~~~~~~h~~~~lL~~Lgi~~~~v~~~~~p~~~l~l~~~~~~~a~~~l~~~~l~~-~~~I~i~pgas~s~~~~~~r~-~~K 333 (467)
....+.+.+..++....+-....|..+..+.... ...+...+..++.. ++.|+..|.=.+.. . . ..+
T Consensus 143 -----~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~-~~~~~i~~~~~~~~~~k~ILyaPT~R~~~----~-~~~~~ 211 (369)
T PF04464_consen 143 -----EFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSK-ENRNRIKKKLGIDKDKKVILYAPTWRDNS----S-NEYFK 211 (369)
T ss_dssp -----HHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT--HHHHHHHHTT--SS-EEEEEE----GGG-------GGSS
T ss_pred -----HHHHHHHHHHhccCcceEEEeCCCeEhHHhccCH-HHHHHHHHHhccCCCCcEEEEeecccccc----c-ccccc
Confidence 1112223455665432111112332222111111 11223334455543 45788887211110 0 0 000
Q ss_pred CCCCHHHHHHHHHHhhhCC-CEEEecCcccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCC
Q 012283 334 SLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKP 412 (467)
Q Consensus 334 ~rWP~e~~~~Li~~L~~~~-~Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~P 412 (467)
.....-.+.+|. .+.+.+ .+++-.+|..............++....+=.++..++..||++||==|+.+-=++.+++|
T Consensus 212 ~~~~~~~~~~l~-~~~~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~~aDiLITDySSi~fD~~~l~KP 290 (369)
T PF04464_consen 212 FFFSDLDFEKLN-FLLKNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVSDNEDIYDLLAAADILITDYSSIIFDFLLLNKP 290 (369)
T ss_dssp ----TT-HHHHH-HHHTTTEEEEE--SHHHHTT----TT-TTTEEE-TT-S-HHHHHHT-SEEEESS-THHHHHGGGT--
T ss_pred ccccccCHHHHH-HHhCCCcEEEEEeCchhhhchhhhhccCCcEEECCCCCCHHHHHHhcCEEEEechhHHHHHHHhCCC
Confidence 001222455666 445555 456667776655444332223333332233478899999999999999999999999999
Q ss_pred EEEE
Q 012283 413 SIAL 416 (467)
Q Consensus 413 tVaL 416 (467)
+|-.
T Consensus 291 iify 294 (369)
T PF04464_consen 291 IIFY 294 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7743
No 70
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=80.33 E-value=6.2 Score=38.55 Aligned_cols=81 Identities=23% Similarity=0.306 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccH-----HHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhc
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKER-----EGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAR 409 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~-----~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAl 409 (467)
.+.+.++++.+.+.. .+++=.+|.+. ...+++.. ..+.....+=..+..||++|+.||+..|...==|...
T Consensus 139 ~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ll~~s~~VvtinStvGlEAll~ 217 (269)
T PF05159_consen 139 QADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN-LPNVVIIDDDVNLYELLEQSDAVVTINSTVGLEALLH 217 (269)
T ss_pred HhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc-CCCeEEECCCCCHHHHHHhCCEEEEECCHHHHHHHHc
Confidence 467888888887664 36666777443 22222222 2222221111345678999999999999999999999
Q ss_pred CCCEEEEeCCC
Q 012283 410 EKPSIALFSSE 420 (467)
Q Consensus 410 g~PtVaLFg~t 420 (467)
|+|+++ ||..
T Consensus 218 gkpVi~-~G~~ 227 (269)
T PF05159_consen 218 GKPVIV-FGRA 227 (269)
T ss_pred CCceEE-ecCc
Confidence 999998 5655
No 71
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=77.19 E-value=33 Score=34.61 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhCCCE-EEecCcccHHHHHHHH---hcCCC----Ccc---cCCHHHHHHHHHhcCEEEeCC---c-hH
Q 012283 338 IQVWAEIANGLREFRPL-FVIPHEKEREGVEDVV---GDDAS----IVF---ITTPGQLAALINDSAGVIATN---T-AA 402 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~~V-vl~g~~~e~~~~~~i~---~~~~~----~~~---~~sL~el~alI~~a~lvIg~D---T-G~ 402 (467)
.+...+.++.+.....+ ++++++.+.+..+++. ..... +.. ..+-.++..+++.||++|.+- + |.
T Consensus 216 ~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~ 295 (388)
T TIGR02149 216 VPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGI 295 (388)
T ss_pred HHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCCh
Confidence 45555666665443334 4445554433333332 22221 221 346789999999999999752 2 33
Q ss_pred H-HHHHhcCCCEEEE
Q 012283 403 I-QLANAREKPSIAL 416 (467)
Q Consensus 403 ~-HLAaAlg~PtVaL 416 (467)
. ==|.+.|+|+|+-
T Consensus 296 ~~lEA~a~G~PvI~s 310 (388)
T TIGR02149 296 VNLEAMACGTPVVAS 310 (388)
T ss_pred HHHHHHHcCCCEEEe
Confidence 3 3478999999984
No 72
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=76.58 E-value=79 Score=30.93 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCc-ccHHHHHH-----HHhc--CCCCcc--c-CCHHHHHHHHHhcCEEEeC---C-
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHE-KEREGVED-----VVGD--DASIVF--I-TTPGQLAALINDSAGVIAT---N- 399 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~-~e~~~~~~-----i~~~--~~~~~~--~-~sL~el~alI~~a~lvIg~---D- 399 (467)
.+.+.+.+..+.+++ .++++|.. .+...... +... ..++.+ . .+-.++..+++.||++|.+ +
T Consensus 200 ~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~ 279 (366)
T cd03822 200 LELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSAD 279 (366)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccc
Confidence 466667777776653 24444433 22221111 2221 122322 2 4568999999999999953 2
Q ss_pred ---chHHHHHHhcCCCEEE
Q 012283 400 ---TAAIQLANAREKPSIA 415 (467)
Q Consensus 400 ---TG~~HLAaAlg~PtVa 415 (467)
++.+--|.|.|+|+|+
T Consensus 280 ~~~~~~~~Ea~a~G~PvI~ 298 (366)
T cd03822 280 QTQSGVLAYAIGFGKPVIS 298 (366)
T ss_pred cccchHHHHHHHcCCCEEe
Confidence 3456668999999997
No 73
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=75.67 E-value=50 Score=33.88 Aligned_cols=73 Identities=10% Similarity=0.076 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHhcCEEEeCCc------hHHHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHH
Q 012283 380 TTPGQLAALINDSAGVIATNT------AAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAV 453 (467)
Q Consensus 380 ~sL~el~alI~~a~lvIg~DT------G~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V 453 (467)
.+-.++..+++.||++|.+-. ..+-=|.|.|+|+|+--....+. .... +...+.+ ...-+++++
T Consensus 265 ~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~E-iv~~--~~~G~~l-------~~~~d~~~l 334 (380)
T PRK15484 265 QPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITE-FVLE--GITGYHL-------AEPMTSDSI 334 (380)
T ss_pred CCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHh-hccc--CCceEEE-------eCCCCHHHH
Confidence 456899999999999997532 23445779999999965433211 1111 1112111 122357777
Q ss_pred HHHHHHHHH
Q 012283 454 LNAMQIFNE 462 (467)
Q Consensus 454 ~~ai~~ll~ 462 (467)
.+++.+++.
T Consensus 335 a~~I~~ll~ 343 (380)
T PRK15484 335 ISDINRTLA 343 (380)
T ss_pred HHHHHHHHc
Confidence 777777664
No 74
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=75.41 E-value=15 Score=33.52 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=29.4
Q ss_pred HHHHHhcCEEEeC--------CchHHH---HHHhcCCCEEEEeCCC
Q 012283 386 AALINDSAGVIAT--------NTAAIQ---LANAREKPSIALFSSE 420 (467)
Q Consensus 386 ~alI~~a~lvIg~--------DTG~~H---LAaAlg~PtVaLFg~t 420 (467)
+++|.+||++|.+ |||.+- .|.|+|+||+++..-.
T Consensus 63 ~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~AlgKPv~~~~~d~ 108 (172)
T COG3613 63 IKLIDQADIVLANLDPFRPDPDSGTAFELGYAIALGKPVYAYRKDA 108 (172)
T ss_pred HHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHcCCceEEEeecc
Confidence 7789999999874 688864 7899999999999754
No 75
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=75.04 E-value=48 Score=35.07 Aligned_cols=78 Identities=9% Similarity=0.050 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhhCC-CEEEecCc--ccHHHHHHHHhcCCC-Ccc--cCCHHHHHHHHHhcCEEEeCC----ch-HHHHH
Q 012283 338 IQVWAEIANGLREFR-PLFVIPHE--KEREGVEDVVGDDAS-IVF--ITTPGQLAALINDSAGVIATN----TA-AIQLA 406 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~-~Vvl~g~~--~e~~~~~~i~~~~~~-~~~--~~sL~el~alI~~a~lvIg~D----TG-~~HLA 406 (467)
.+...+.+..|.++. .++++|.. ...+.++++....+. +.+ ..+-.++..+++.||++|-+- .| .+--|
T Consensus 306 ~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEA 385 (473)
T TIGR02095 306 VDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYA 385 (473)
T ss_pred hHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHH
Confidence 456777777776655 34444443 234555666554443 222 334456778999999999762 23 44568
Q ss_pred HhcCCCEEE
Q 012283 407 NAREKPSIA 415 (467)
Q Consensus 407 aAlg~PtVa 415 (467)
.+.|+|+|+
T Consensus 386 ma~G~pvI~ 394 (473)
T TIGR02095 386 MRYGTVPIV 394 (473)
T ss_pred HHCCCCeEE
Confidence 999999987
No 76
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=74.69 E-value=17 Score=36.38 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcC---CCCcc--cCCHHHHHHHHHhcCEEEeCC----------
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVF--ITTPGQLAALINDSAGVIATN---------- 399 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~---~~~~~--~~sL~el~alI~~a~lvIg~D---------- 399 (467)
.+...+.+..|.+++ .+++.|...+.+.++++.+.. .++.+ ..+-.++..+++.||++|.+-
T Consensus 203 ~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~ 282 (367)
T cd05844 203 PLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEG 282 (367)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccC
Confidence 345566666665543 355556544455555555442 22333 345588999999999998753
Q ss_pred -chHHHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 400 -TAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 400 -TG~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
...+==|.|.|+|+|+-=..... ... -- +...+ ++ ..-+++++.+++.++++.
T Consensus 283 ~~~~~~EA~a~G~PvI~s~~~~~~-e~i-~~-~~~g~-~~-------~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 283 LPVVLLEAQASGVPVVATRHGGIP-EAV-ED-GETGL-LV-------PEGDVAALAAALGRLLAD 336 (367)
T ss_pred CchHHHHHHHcCCCEEEeCCCCch-hhe-ec-CCeeE-EE-------CCCCHHHHHHHHHHHHcC
Confidence 13456688999999963211110 001 00 11111 11 233678888888887754
No 77
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=74.65 E-value=46 Score=33.98 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhhCC----C-EEEecCc-----ccHHHHHHHHhcCC---CCcc--cCCHHHHHHHHHhcCEEEeCC---
Q 012283 338 IQVWAEIANGLREFR----P-LFVIPHE-----KEREGVEDVVGDDA---SIVF--ITTPGQLAALINDSAGVIATN--- 399 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~----~-Vvl~g~~-----~e~~~~~~i~~~~~---~~~~--~~sL~el~alI~~a~lvIg~D--- 399 (467)
.+...+.+..|.++. . ++++|++ .+.+.++++.+... ++.+ ..+-.++..+++.||++|-+-
T Consensus 234 ~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E 313 (405)
T TIGR03449 234 PDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNE 313 (405)
T ss_pred HHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCC
Confidence 345555555554432 2 4555542 23344555444332 2332 345689999999999998653
Q ss_pred --chHHHHHHhcCCCEEEEe
Q 012283 400 --TAAIQLANAREKPSIALF 417 (467)
Q Consensus 400 --TG~~HLAaAlg~PtVaLF 417 (467)
...+-=|.|.|+|+|+--
T Consensus 314 ~~g~~~lEAma~G~Pvi~~~ 333 (405)
T TIGR03449 314 SFGLVAMEAQACGTPVVAAR 333 (405)
T ss_pred CcChHHHHHHHcCCCEEEec
Confidence 346888999999999854
No 78
>PRK10307 putative glycosyl transferase; Provisional
Probab=74.19 E-value=53 Score=33.82 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhhCC--CEEEecCcccHHHHHHHHhcC--CCCcc--cCCHHHHHHHHHhcCEEEeCCc-h------H--
Q 012283 338 IQVWAEIANGLREFR--PLFVIPHEKEREGVEDVVGDD--ASIVF--ITTPGQLAALINDSAGVIATNT-A------A-- 402 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~--~Vvl~g~~~e~~~~~~i~~~~--~~~~~--~~sL~el~alI~~a~lvIg~DT-G------~-- 402 (467)
.+...+.++.+.+.. .++++|...+++.+++..+.. .++.+ ..+-.++..+++.||++|.+-. + |
T Consensus 244 ~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~k 323 (412)
T PRK10307 244 LELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSK 323 (412)
T ss_pred HHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHH
Confidence 344555555554332 255666555566666555432 23333 3467899999999999875422 1 1
Q ss_pred HHHHHhcCCCEEEEe
Q 012283 403 IQLANAREKPSIALF 417 (467)
Q Consensus 403 ~HLAaAlg~PtVaLF 417 (467)
+==|-|.|+|+|+-=
T Consensus 324 l~eama~G~PVi~s~ 338 (412)
T PRK10307 324 LTNMLASGRNVVATA 338 (412)
T ss_pred HHHHHHcCCCEEEEe
Confidence 112468999999864
No 79
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=73.50 E-value=34 Score=33.48 Aligned_cols=79 Identities=16% Similarity=0.152 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhhC-C-CEEEecCcccHHHHHHHHhcCCCCcc--cCCHHHHHHHHHhcCEEEeCC-----chHHHHHHh
Q 012283 338 IQVWAEIANGLREF-R-PLFVIPHEKEREGVEDVVGDDASIVF--ITTPGQLAALINDSAGVIATN-----TAAIQLANA 408 (467)
Q Consensus 338 ~e~~~~Li~~L~~~-~-~Vvl~g~~~e~~~~~~i~~~~~~~~~--~~sL~el~alI~~a~lvIg~D-----TG~~HLAaA 408 (467)
.+.+.++++.+.++ . .+++.|...+.+..+ ....++.+ ..+-.++..+++.||++|.+- ...+-=|.|
T Consensus 212 ~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a 288 (364)
T cd03814 212 LEALLDADLPLRRRPPVRLVIVGDGPARARLE---ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMA 288 (364)
T ss_pred HHHHHHHHHHhhhcCCceEEEEeCCchHHHHh---ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHH
Confidence 57788888888764 2 355555444444333 22233333 346789999999999999653 234667889
Q ss_pred cCCCEEEEeCC
Q 012283 409 REKPSIALFSS 419 (467)
Q Consensus 409 lg~PtVaLFg~ 419 (467)
.|+|+|+--.+
T Consensus 289 ~g~PvI~~~~~ 299 (364)
T cd03814 289 SGLPVVAPDAG 299 (364)
T ss_pred cCCCEEEcCCC
Confidence 99999975433
No 80
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=73.13 E-value=60 Score=28.49 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHhhhC---C-CEEEecCcccHHHHHHHHhcCC---CCcc--cCCHHHHHHHHHhcCEEEeC---CchHH-
Q 012283 337 PIQVWAEIANGLREF---R-PLFVIPHEKEREGVEDVVGDDA---SIVF--ITTPGQLAALINDSAGVIAT---NTAAI- 403 (467)
Q Consensus 337 P~e~~~~Li~~L~~~---~-~Vvl~g~~~e~~~~~~i~~~~~---~~~~--~~sL~el~alI~~a~lvIg~---DTG~~- 403 (467)
..+.+.+++..+.++ . .+++.|................ ++.+ ..+-.++..+++.|+++|.. +++++
T Consensus 29 ~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~ 108 (172)
T PF00534_consen 29 GIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKSSDIFVSPSRNEGFGLS 108 (172)
T ss_dssp THHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHHTSEEEE-BSSBSS-HH
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccccccccccceeccccccccccccc
Confidence 367788888888642 2 3556663333333333333222 2222 23356999999999999965 23333
Q ss_pred -HHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 404 -QLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 404 -HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
==|.+.|+|+|+--.+.. ...... +. ...++. .=+++++.+++.+++..
T Consensus 109 ~~Ea~~~g~pvI~~~~~~~-~e~~~~--~~-~g~~~~-------~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 109 LLEAMACGCPVIASDIGGN-NEIIND--GV-NGFLFD-------PNDIEELADAIEKLLND 158 (172)
T ss_dssp HHHHHHTT-EEEEESSTHH-HHHSGT--TT-SEEEES-------TTSHHHHHHHHHHHHHH
T ss_pred cccccccccceeeccccCC-ceeecc--cc-ceEEeC-------CCCHHHHHHHHHHHHCC
Confidence 226789999998654332 122211 11 122322 12889999999988865
No 81
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=72.38 E-value=5.4 Score=34.48 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=42.3
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCC-CCCEEEE
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNK-NVRWANV 178 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p-~Id~ii~ 178 (467)
|||++...|+++-.- ...+++.|++. +.+|+++.++....++.... ..++++.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~--g~~v~vv~S~~A~~~~~~~~~~~~~v~~ 54 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA--GWEVRVVLSPSAERFVTPEGLTGEPVYT 54 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT--TSEEEEEESHHHHHHSHHHGHCCSCEEC
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC--CCEEEEEECCcHHHHhhhhccccchhhh
Confidence 799999999988777 99999999998 89999999998887777654 4555543
No 82
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=72.05 E-value=37 Score=34.13 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhhCC---CEEEecC-ccc-----HHHHHHHHhcCC---CCcc--cCCHHHHHHHHHhcCEEEeCC---c
Q 012283 338 IQVWAEIANGLREFR---PLFVIPH-EKE-----REGVEDVVGDDA---SIVF--ITTPGQLAALINDSAGVIATN---T 400 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~-~~e-----~~~~~~i~~~~~---~~~~--~~sL~el~alI~~a~lvIg~D---T 400 (467)
.+.+.+.+..+.+++ .++++|+ ..+ ...++.+.+... ++.+ ..+-.++..+++.||++|.+- +
T Consensus 235 ~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~ 314 (398)
T cd03800 235 IDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEP 314 (398)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccc
Confidence 567777777777543 2444443 322 112233333322 2222 456789999999999999652 1
Q ss_pred --hHHHHHHhcCCCEEEE
Q 012283 401 --AAIQLANAREKPSIAL 416 (467)
Q Consensus 401 --G~~HLAaAlg~PtVaL 416 (467)
..+.=|.|.|+|+|+-
T Consensus 315 ~~~~l~Ea~a~G~Pvi~s 332 (398)
T cd03800 315 FGLTALEAMACGLPVVAT 332 (398)
T ss_pred cCcHHHHHHhcCCCEEEC
Confidence 2467788999999863
No 83
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=71.91 E-value=23 Score=32.01 Aligned_cols=83 Identities=20% Similarity=0.154 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHH-HHhc--CCCCccc--C-CHHHHHHHHHhcCEEEeCC-----chHH
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVED-VVGD--DASIVFI--T-TPGQLAALINDSAGVIATN-----TAAI 403 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~-i~~~--~~~~~~~--~-sL~el~alI~~a~lvIg~D-----TG~~ 403 (467)
.+.+.+.++.+.++. .+++.|...+....+. +... ..++.+. . .-.+...+.+.||++|.+. +..+
T Consensus 119 ~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~ 198 (229)
T cd01635 119 LDDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVV 198 (229)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHH
Confidence 567778888887652 3555666555554443 2221 1223322 2 2345555555599999999 7889
Q ss_pred HHHHhcCCCEEEEeCCC
Q 012283 404 QLANAREKPSIALFSSE 420 (467)
Q Consensus 404 HLAaAlg~PtVaLFg~t 420 (467)
.=|.+.|+|+|+--.+.
T Consensus 199 ~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 199 LEAMACGLPVIATDVGG 215 (229)
T ss_pred HHHHhCCCCEEEcCCCC
Confidence 99999999999866554
No 84
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=71.66 E-value=22 Score=36.99 Aligned_cols=114 Identities=11% Similarity=0.190 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCC---CCcc--cCCHHHHHHHHHhcCEEEeCC---------c
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SIVF--ITTPGQLAALINDSAGVIATN---------T 400 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~---~~~~--~~sL~el~alI~~a~lvIg~D---------T 400 (467)
.+...+.+..|.+++ .++++|...+++.++++.+..+ ++.+ ..+-.|+..+++.||++|-+- +
T Consensus 237 ~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg 316 (406)
T PRK15427 237 LHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEG 316 (406)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccC
Confidence 456666666666554 2445554444555555554332 2222 345689999999999999763 2
Q ss_pred hH--HHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 012283 401 AA--IQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNE 462 (467)
Q Consensus 401 G~--~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~ 462 (467)
.+ +-=|-|.|+|+|+--.+..+. .. -- +...+ ++ ..=++++..+++.+++.
T Consensus 317 ~p~~llEAma~G~PVI~t~~~g~~E-~v-~~-~~~G~-lv-------~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 317 IPVALMEAMAVGIPVVSTLHSGIPE-LV-EA-DKSGW-LV-------PENDAQALAQRLAAFSQ 369 (406)
T ss_pred ccHHHHHHHhCCCCEEEeCCCCchh-hh-cC-CCceE-Ee-------CCCCHHHHHHHHHHHHh
Confidence 23 445889999999854332111 11 11 11121 11 22357777777777765
No 85
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=71.04 E-value=1.9e+02 Score=32.70 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCC---CCcccCCHHHHHHHHHhcCEEEeCCc-----hHHHHH
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SIVFITTPGQLAALINDSAGVIATNT-----AAIQLA 406 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~---~~~~~~sL~el~alI~~a~lvIg~DT-----G~~HLA 406 (467)
.+.+.+.+..+.++. .++++|+..+++.++++.+... .+.+.--..++..+++.||++|-+-. ..+-=|
T Consensus 532 ~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEA 611 (694)
T PRK15179 532 PFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEA 611 (694)
T ss_pred HHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHH
Confidence 455666666665443 3555665556666666665443 23332223678899999999997532 234457
Q ss_pred HhcCCCEEEEe
Q 012283 407 NAREKPSIALF 417 (467)
Q Consensus 407 aAlg~PtVaLF 417 (467)
-|.|+|+|+--
T Consensus 612 MA~G~PVVat~ 622 (694)
T PRK15179 612 QFSGVPVVTTL 622 (694)
T ss_pred HHcCCeEEEEC
Confidence 79999999853
No 86
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=70.04 E-value=50 Score=33.91 Aligned_cols=79 Identities=10% Similarity=0.056 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCC--C-Ccc--cCCHHHHHHHHHhcCEEEeCCc-----hHHH
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA--S-IVF--ITTPGQLAALINDSAGVIATNT-----AAIQ 404 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~--~-~~~--~~sL~el~alI~~a~lvIg~DT-----G~~H 404 (467)
.+...+.++.|.++. .+++.|...+.+..+++..... + +.+ ..+-.++..+++.||++|.+.. ..+-
T Consensus 208 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~ 287 (398)
T cd03796 208 IDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIV 287 (398)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHH
Confidence 355666666665543 3445554444555555544332 2 222 2345899999999999997642 2666
Q ss_pred HHHhcCCCEEEE
Q 012283 405 LANAREKPSIAL 416 (467)
Q Consensus 405 LAaAlg~PtVaL 416 (467)
=|-|.|+|+|+-
T Consensus 288 EAma~G~PVI~s 299 (398)
T cd03796 288 EAASCGLLVVST 299 (398)
T ss_pred HHHHcCCCEEEC
Confidence 789999999884
No 87
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=68.82 E-value=11 Score=31.80 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=59.7
Q ss_pred HHHHHH-HHHHhhhCC---CEEEecCcccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCC------chHHHHHH
Q 012283 338 IQVWAE-IANGLREFR---PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATN------TAAIQLAN 407 (467)
Q Consensus 338 ~e~~~~-Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~D------TG~~HLAa 407 (467)
.+.+.+ .++.+.++. .+.++|...+ .++++ ..+++.....+.|+.++++.||++|.+= ++.+-=|.
T Consensus 17 ~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~--~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~ 92 (135)
T PF13692_consen 17 LEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL--RRPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAM 92 (135)
T ss_dssp HHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH--HHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHH
T ss_pred ccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh--cCCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHH
Confidence 566666 777777664 2445555333 13222 1334444333379999999999999852 36777788
Q ss_pred hcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 012283 408 AREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNE 462 (467)
Q Consensus 408 Alg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~ 462 (467)
+.|+|+|+-=.+ ...+ +. . ..+-+ ++ .=+++++.+++.+++.
T Consensus 93 ~~G~pvi~~~~~---~~~~-~~-~-~~~~~------~~-~~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 93 AAGKPVIASDNG---AEGI-VE-E-DGCGV------LV-ANDPEELAEAIERLLN 134 (135)
T ss_dssp CTT--EEEEHHH---CHCH-S-----SEEE------E--TT-HHHHHHHHHHHHH
T ss_pred HhCCCEEECCcc---hhhh-ee-e-cCCeE------EE-CCCHHHHHHHHHHHhc
Confidence 999999995552 1223 21 1 12211 12 2389999999999875
No 88
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=67.84 E-value=59 Score=32.08 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhC--C-C-EEEecCcccHHHHHHHHhcCCCCcc--cCC-HHHHHHHHHhcCEEEeCC-----chHHHH
Q 012283 338 IQVWAEIANGLREF--R-P-LFVIPHEKEREGVEDVVGDDASIVF--ITT-PGQLAALINDSAGVIATN-----TAAIQL 405 (467)
Q Consensus 338 ~e~~~~Li~~L~~~--~-~-Vvl~g~~~e~~~~~~i~~~~~~~~~--~~s-L~el~alI~~a~lvIg~D-----TG~~HL 405 (467)
.+...+.+..+.++ . . ++++|...+.... ....++.+ ... -.++..+++.||++|.+- +..+.=
T Consensus 208 ~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~E 283 (365)
T cd03825 208 FDELIEALKRLAERWKDDIELVVFGASDPEIPP----DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIE 283 (365)
T ss_pred HHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc----cCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHH
Confidence 56667777777663 2 2 4444544332211 11112222 222 568899999999999975 578888
Q ss_pred HHhcCCCEEEEe
Q 012283 406 ANAREKPSIALF 417 (467)
Q Consensus 406 AaAlg~PtVaLF 417 (467)
|.+.|+|+|+.-
T Consensus 284 am~~g~PvI~~~ 295 (365)
T cd03825 284 ALACGTPVVAFD 295 (365)
T ss_pred HHhcCCCEEEec
Confidence 999999999754
No 89
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=65.91 E-value=84 Score=31.76 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=28.1
Q ss_pred CHHHHHHHHHhcCEEEeCCc----h-HHHHHHhcCCCEEEE
Q 012283 381 TPGQLAALINDSAGVIATNT----A-AIQLANAREKPSIAL 416 (467)
Q Consensus 381 sL~el~alI~~a~lvIg~DT----G-~~HLAaAlg~PtVaL 416 (467)
+-.++.++++.||+++.+-. | .+==|.|.|+|+|+-
T Consensus 263 ~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s 303 (372)
T cd03792 263 SDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAG 303 (372)
T ss_pred CHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEc
Confidence 55889999999999997643 3 344477999999874
No 90
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=65.82 E-value=79 Score=30.73 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcc--cHHHHHHHHhcCC---CCcc--cCCHHHHHHHHHhcCEEEeCCc-----hH
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEK--EREGVEDVVGDDA---SIVF--ITTPGQLAALINDSAGVIATNT-----AA 402 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~--e~~~~~~i~~~~~---~~~~--~~sL~el~alI~~a~lvIg~DT-----G~ 402 (467)
.+.+.+.+..|.+++ .++++|... .....+.+..... ++.+ ..+-.++..+++.||++|.+-. ..
T Consensus 218 ~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~ 297 (375)
T cd03821 218 LDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIV 297 (375)
T ss_pred HHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcH
Confidence 466777777777653 344555332 2333333322222 2222 3344699999999999987653 44
Q ss_pred HHHHHhcCCCEEEE
Q 012283 403 IQLANAREKPSIAL 416 (467)
Q Consensus 403 ~HLAaAlg~PtVaL 416 (467)
+-=|.+.|+|+|+-
T Consensus 298 ~~Eama~G~PvI~~ 311 (375)
T cd03821 298 VAEALACGTPVVTT 311 (375)
T ss_pred HHHHHhcCCCEEEc
Confidence 56688999999983
No 91
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=65.35 E-value=49 Score=32.98 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=60.6
Q ss_pred HHHHHHHhhhCC-CEEEecCcccHHHHHHHHhcCCCCcc--cCCHHHHHHHHHhcCEEEeCC--c--hHHHHHHhcCCCE
Q 012283 341 WAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVF--ITTPGQLAALINDSAGVIATN--T--AAIQLANAREKPS 413 (467)
Q Consensus 341 ~~~Li~~L~~~~-~Vvl~g~~~e~~~~~~i~~~~~~~~~--~~sL~el~alI~~a~lvIg~D--T--G~~HLAaAlg~Pt 413 (467)
...+++.+.... .++++|...+.+..++ ....++.+ ..+-.++..+++.||++|.+- + -.+-=|.|.|+|+
T Consensus 210 ~~~li~a~~~~~~~l~ivG~g~~~~~l~~--~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pv 287 (351)
T cd03804 210 IDLAIEAFNKLGKRLVVIGDGPELDRLRA--KAGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPV 287 (351)
T ss_pred hHHHHHHHHHCCCcEEEEECChhHHHHHh--hcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCE
Confidence 334444444333 3555555445454444 22234443 456678999999999999652 2 2233477999999
Q ss_pred EEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHhh
Q 012283 414 IALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNESL 464 (467)
Q Consensus 414 VaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~~ 464 (467)
|+.-.+... ... -. +..+. ++..-+++++.+++.+++...
T Consensus 288 i~~~~~~~~-e~i-~~-~~~G~--------~~~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 288 IAYGKGGAL-ETV-ID-GVTGI--------LFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred EEeCCCCCc-cee-eC-CCCEE--------EeCCCCHHHHHHHHHHHHhCc
Confidence 996322211 111 00 11111 223346788888888887643
No 92
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=64.48 E-value=81 Score=33.05 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=45.2
Q ss_pred HHHHhhhCC-CEEEecCcc-----cHHHHHHHHhcCC-CCcccCCHHHHHHHH--HhcCEEEeCCchHHHHHHhcCCCEE
Q 012283 344 IANGLREFR-PLFVIPHEK-----EREGVEDVVGDDA-SIVFITTPGQLAALI--NDSAGVIATNTAAIQLANAREKPSI 414 (467)
Q Consensus 344 Li~~L~~~~-~Vvl~g~~~-----e~~~~~~i~~~~~-~~~~~~sL~el~alI--~~a~lvIg~DTG~~HLAaAlg~PtV 414 (467)
+++.|.+-| .|+..+... ..+..+.+.. .. .+.....+.+...++ ..+|++||+ |...++|..+|+|.+
T Consensus 295 la~~L~elGmevv~~~t~~~~~~~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~~~~~pDl~Ig~-s~~~~~a~~~giP~~ 372 (416)
T cd01980 295 VARLLIESGAEVPYVSTSIPKTSLSAPDYEWLSA-LGVEVRYRKSLEDDIAAVEEYRPDLAIGT-TPLVQYAKEKGIPAL 372 (416)
T ss_pred HHHHHHHcCCEEEEEecCCCChhhhHHHHHHHHh-cCCccccCCCHHHHHHHHhhcCCCEEEeC-ChhhHHHHHhCCCEE
Confidence 788887777 344333321 2233333322 22 111235555555543 368999999 889999999999998
Q ss_pred EEeCC
Q 012283 415 ALFSS 419 (467)
Q Consensus 415 aLFg~ 419 (467)
-+.-+
T Consensus 373 r~~~~ 377 (416)
T cd01980 373 YYTNL 377 (416)
T ss_pred EecCh
Confidence 86655
No 93
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=63.60 E-value=70 Score=31.86 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=61.5
Q ss_pred CcEEEEecCCCCccccccCCCCCCC---------CCCHHHHHHHHHHhhhCC--C-EEEecCcccHHHHHHHHhcCCC-C
Q 012283 310 GKYIVIHGIESDSKASMQSRGDTDS---------LLPIQVWAEIANGLREFR--P-LFVIPHEKEREGVEDVVGDDAS-I 376 (467)
Q Consensus 310 ~~~I~i~pgas~s~~~~~~r~~~K~---------rWP~e~~~~Li~~L~~~~--~-Vvl~g~~~e~~~~~~i~~~~~~-~ 376 (467)
...|+||- +|+++.. .=+.+++.+-++.+.++. + +++++ +|.+.+++....... .
T Consensus 163 ~~~V~VHI----------RRGDy~~~~~~~~~~~~~~~~Yy~~Ai~~i~~~~~~~~f~ifS--DD~~w~k~~l~~~~~~~ 230 (298)
T PF01531_consen 163 SNSVCVHI----------RRGDYVSNGNHNWKHGICDKDYYKKAIEYIREKVKNPKFFIFS--DDIEWCKENLKFSNGDV 230 (298)
T ss_pred CCeEEEEE----------EchhccccccccccCCCCCHHHHHHHHHHHHHhCCCCEEEEEc--CCHHHHHHHHhhcCCcE
Confidence 56899994 4455432 125688999999998775 3 44555 356666554433322 2
Q ss_pred cc--cCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCC-CEEEEe
Q 012283 377 VF--ITTPGQLAALINDSAGVIATNTAAIQLANAREK-PSIALF 417 (467)
Q Consensus 377 ~~--~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~-PtVaLF 417 (467)
.+ ..+..+=..++++|+.+|...|.-..-||-++. +.+.+.
T Consensus 231 ~~~~~~~~~~Dl~lms~C~~~IisnSTFswW~a~L~~~~~i~i~ 274 (298)
T PF01531_consen 231 YFSGNNSPYEDLYLMSQCKHFIISNSTFSWWAAYLSKNDKIVIA 274 (298)
T ss_pred EEECCCCHHHHHHHHHhCCcEEECCChHHHHHHHHCCCCCEEEE
Confidence 22 234444455789999999999999999998865 445443
No 94
>PRK00654 glgA glycogen synthase; Provisional
Probab=60.14 E-value=1.4e+02 Score=31.63 Aligned_cols=79 Identities=9% Similarity=-0.016 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhhCC-CEEEecCc-c-cHHHHHHHHhcCCC-Ccc--cCCHHHHHHHHHhcCEEEeCC----ch-HHHHH
Q 012283 338 IQVWAEIANGLREFR-PLFVIPHE-K-EREGVEDVVGDDAS-IVF--ITTPGQLAALINDSAGVIATN----TA-AIQLA 406 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~-~Vvl~g~~-~-e~~~~~~i~~~~~~-~~~--~~sL~el~alI~~a~lvIg~D----TG-~~HLA 406 (467)
.+...+.+..+.++. .++++|+. . ..+.++++....+. +.. ..+-.+...+++.||++|-+- .| ..--|
T Consensus 297 ~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEA 376 (466)
T PRK00654 297 LDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYA 376 (466)
T ss_pred hHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHH
Confidence 456666666666555 34444433 2 23455566555543 221 223234567899999999873 23 56678
Q ss_pred HhcCCCEEEE
Q 012283 407 NAREKPSIAL 416 (467)
Q Consensus 407 aAlg~PtVaL 416 (467)
.+.|+|+|+-
T Consensus 377 ma~G~p~V~~ 386 (466)
T PRK00654 377 LRYGTLPIVR 386 (466)
T ss_pred HHCCCCEEEe
Confidence 8999999884
No 95
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=60.01 E-value=1.3e+02 Score=31.69 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhhCC-CEEEec-Cccc-HHHHHHHHhcCC-CCcc--cCCHHHHHHHHHhcCEEEeCC----chH-HHHH
Q 012283 338 IQVWAEIANGLREFR-PLFVIP-HEKE-REGVEDVVGDDA-SIVF--ITTPGQLAALINDSAGVIATN----TAA-IQLA 406 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~-~Vvl~g-~~~e-~~~~~~i~~~~~-~~~~--~~sL~el~alI~~a~lvIg~D----TG~-~HLA 406 (467)
.+...+.+..+.++. .++++| ++.+ .+..+++..... ++.+ ..+-.+...+++.||++|.+- .|. +--|
T Consensus 311 ~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEA 390 (476)
T cd03791 311 IDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYA 390 (476)
T ss_pred HHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHH
Confidence 466777777777665 344444 3322 344445544432 3322 334445567999999999763 343 3468
Q ss_pred HhcCCCEEEE
Q 012283 407 NAREKPSIAL 416 (467)
Q Consensus 407 aAlg~PtVaL 416 (467)
.+.|+|+|+-
T Consensus 391 ma~G~pvI~~ 400 (476)
T cd03791 391 MRYGTVPIVR 400 (476)
T ss_pred hhCCCCCEEC
Confidence 8999999874
No 96
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=58.09 E-value=58 Score=32.59 Aligned_cols=83 Identities=12% Similarity=0.158 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHhhhCCCEEEecCc---ccHHHHHH-HHhcCCC-Ccc----cCCHHHHHHHHHhcC-----EEEeC---
Q 012283 336 LPIQVWAEIANGLREFRPLFVIPHE---KEREGVED-VVGDDAS-IVF----ITTPGQLAALINDSA-----GVIAT--- 398 (467)
Q Consensus 336 WP~e~~~~Li~~L~~~~~Vvl~g~~---~e~~~~~~-i~~~~~~-~~~----~~sL~el~alI~~a~-----lvIg~--- 398 (467)
...+.|++|.+.+-++ +.++|.. ...++++. +.....+ +.. ..|+.|+...++.|+ .+|+.
T Consensus 161 dD~e~w~~lt~~~g~~--~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~~a~~~g~~~vvS~rsg 238 (295)
T PF00113_consen 161 DDWEGWAKLTKRLGDK--IQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVKLAKSAGWGVVVSHRSG 238 (295)
T ss_dssp T-HHHHHHHHHHHTTT--SEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHHHHHHTT-EEEEE--SS
T ss_pred cchHHHHHHHHhhhcc--eeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHHHHHHCCceeeccCCCC
Confidence 4568999999998654 3334432 23444444 3333223 222 478888877777766 78876
Q ss_pred ---CchHHHHHHhcCCCEEEEeCCC
Q 012283 399 ---NTAAIQLANAREKPSIALFSSE 420 (467)
Q Consensus 399 ---DTG~~HLAaAlg~PtVaLFg~t 420 (467)
||-.+|||.+++++.|=.=++.
T Consensus 239 EteD~~iadLaVg~~a~~iK~G~p~ 263 (295)
T PF00113_consen 239 ETEDTFIADLAVGLGAGQIKTGAPC 263 (295)
T ss_dssp --S--HHHHHHHHTT-SEEEEESSS
T ss_pred CcCchhHHHHHhccCcCeEecccch
Confidence 8889999999999988765444
No 97
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=57.07 E-value=74 Score=31.89 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHhhhCCC-EEEecC---------cccHHHHHHHHhcCCCCc----c----------cCCHHHHHHHHHh
Q 012283 336 LPIQVWAEIANGLREFRP-LFVIPH---------EKEREGVEDVVGDDASIV----F----------ITTPGQLAALIND 391 (467)
Q Consensus 336 WP~e~~~~Li~~L~~~~~-Vvl~g~---------~~e~~~~~~i~~~~~~~~----~----------~~sL~el~alI~~ 391 (467)
+..+.+.+-++.|.+.+. |++... ..++++++++.+.+.+.. . .+...+...+-++
T Consensus 15 ~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~rlL~~lD~~~i~~~ 94 (308)
T cd07062 15 ELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDSNELLPYLDYELIKKN 94 (308)
T ss_pred cCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCHhhhhhhcCHHHHhhC
Confidence 446889999999988883 443332 346778888887664421 1 1222334445577
Q ss_pred cCEEEe-CCchHHHHHHhcCCCEEEEeCCC
Q 012283 392 SAGVIA-TNTAAIQLANAREKPSIALFSSE 420 (467)
Q Consensus 392 a~lvIg-~DTG~~HLAaAlg~PtVaLFg~t 420 (467)
-+.||| .|...+|+|-...+-.++++||.
T Consensus 95 PK~fiGySDiTaL~~al~~~~g~~t~hGp~ 124 (308)
T cd07062 95 PKIFIGYSDITALHLAIYKKTGLVTYYGPN 124 (308)
T ss_pred CCEEEeccHHHHHHHHHHHhcCCeEEECcc
Confidence 899999 79999999998777788899975
No 98
>PRK14098 glycogen synthase; Provisional
Probab=56.70 E-value=1.8e+02 Score=31.08 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhCC-CEEEecC-cc-cHHHHHHHHhcCCC-Ccc--cCCHHHHHHHHHhcCEEEeCC----chHH-HHH
Q 012283 338 IQVWAEIANGLREFR-PLFVIPH-EK-EREGVEDVVGDDAS-IVF--ITTPGQLAALINDSAGVIATN----TAAI-QLA 406 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~-~Vvl~g~-~~-e~~~~~~i~~~~~~-~~~--~~sL~el~alI~~a~lvIg~D----TG~~-HLA 406 (467)
.+...+.+..|.+.. .++++|+ +. .++.++++.+..++ +.+ ..+=.++..+++.||++|-+- .|.. -.|
T Consensus 322 ~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEA 401 (489)
T PRK14098 322 AELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFA 401 (489)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHH
Confidence 456667777776555 3444443 32 24556666655543 322 345567789999999999653 2333 357
Q ss_pred HhcCCCEEEE
Q 012283 407 NAREKPSIAL 416 (467)
Q Consensus 407 aAlg~PtVaL 416 (467)
.+.|+|.|+-
T Consensus 402 ma~G~ppVv~ 411 (489)
T PRK14098 402 MSYGTIPVAY 411 (489)
T ss_pred HhCCCCeEEe
Confidence 8899988874
No 99
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=56.53 E-value=88 Score=31.53 Aligned_cols=118 Identities=13% Similarity=0.112 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhCCCEEE--ecC------cccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCC
Q 012283 340 VWAEIANGLREFRPLFV--IPH------EKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREK 411 (467)
Q Consensus 340 ~~~~Li~~L~~~~~Vvl--~g~------~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~ 411 (467)
.+++-++.|.....|++ ..+ .-..+.+.++.+..|+..+..=+...+++.+.|| +||.-++...++.....
T Consensus 63 fMae~a~~l~p~k~vilp~~~a~C~~a~~~~~~~i~~lk~~~Pda~vvah~n~~aeVka~aD-~v~TSsna~~~v~~~~~ 141 (310)
T TIGR00550 63 FMGETAKILNPEKTVLMPDLGAGCSMADMCPPEEFKKLKERHPDAFVVTYVNTTAEVKALAD-IVCTSSNAVKVVEHLDK 141 (310)
T ss_pred hHHHHHHHhCCCCEEEccCCCCCCccccccCHHHHHHHHHHCCCCEEEEECCCCHHHHHhCC-EEEchHHHHHHHHhccc
Confidence 56777776655443443 111 1223456667777765432111112233444444 56666777777776633
Q ss_pred C-EEEEeCCCCC-CCccccCCCCCceEeecCCCCC--CCCCCHHHHHHHHHH
Q 012283 412 P-SIALFSSELK-GRLFVPNAEEKKCTVISSRTGK--LIDTPVEAVLNAMQI 459 (467)
Q Consensus 412 P-tVaLFg~t~p-~~~~~P~~~~~~c~i~~~~~~c--m~~Is~e~V~~ai~~ 459 (467)
. -..||++... ..+.. ....+....+..+..| |+.+++++|.++.++
T Consensus 142 ~~~~Iif~pd~~L~~~~~-~~p~k~~i~~~~~g~C~vh~~~t~e~v~~~~~~ 192 (310)
T TIGR00550 142 DNKKILFLPDKNLGRYVQ-EQTLKDMILWPEQGHCSVHEKFTTEDLERLKEK 192 (310)
T ss_pred CCCEEEEECchHHHHHHH-hCCCCEEEeCCCCCCCcChhhCCHHHHHHHHHH
Confidence 1 2345555411 00000 0011121111112233 577899999888765
No 100
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=56.29 E-value=19 Score=33.46 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=39.7
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhc
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL 169 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~ 169 (467)
++||++..+|++| .+.+.-+++.|++.. +++|+++.++.+..++..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~-g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVG-EIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhc-CCeEEEEECHHHHHHHHH
Confidence 4789999999999 788889999998753 789999999998887764
No 101
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=55.98 E-value=21 Score=34.27 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=40.2
Q ss_pred EEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcC
Q 012283 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN 170 (467)
Q Consensus 124 rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~ 170 (467)
||++-.+|+-+=+..+..+++.|++.|++++|+++.++.+..++...
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhh
Confidence 57777788777778999999999999999999999999887776644
No 102
>COG4261 Predicted acyltransferase [General function prediction only]
Probab=55.11 E-value=8.3 Score=37.25 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.4
Q ss_pred CchHHHHHHhcCCCEEEEeCCCC
Q 012283 399 NTAAIQLANAREKPSIALFSSEL 421 (467)
Q Consensus 399 DTG~~HLAaAlg~PtVaLFg~t~ 421 (467)
-+||.|||+++++|++-+||-..
T Consensus 222 pqgP~ilAaaLk~PV~l~fgLy~ 244 (309)
T COG4261 222 PQGPFILAAALKCPVNLIFGLYQ 244 (309)
T ss_pred CCCHHHHHHHhCCCeEEEEEeee
Confidence 47999999999999999999553
No 103
>PLN02316 synthase/transferase
Probab=54.56 E-value=50 Score=38.77 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=34.8
Q ss_pred ccccCCccEEEEEe--------cCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCc
Q 012283 116 LKIRGDVRRCCCII--------SGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG 163 (467)
Q Consensus 116 ~~~r~~~~rILII~--------~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~ 163 (467)
...+.+.||||.|. .|||||++-.+| ++|++. |.+|++++....
T Consensus 581 ~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp--~ALa~~--Gh~V~VitP~Y~ 632 (1036)
T PLN02316 581 GIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLS--RAVQDL--NHNVDIILPKYD 632 (1036)
T ss_pred CCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHH--HHHHHc--CCEEEEEecCCc
Confidence 34567789999764 799999998887 778776 789999998653
No 104
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=52.80 E-value=2.6e+02 Score=28.16 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=68.2
Q ss_pred cCHHHHHHHHH-HHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhh---C-C-CEEEecCcc-c
Q 012283 290 ISRRLKEVVAE-KYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLRE---F-R-PLFVIPHEK-E 362 (467)
Q Consensus 290 l~~~~~~~a~~-~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~---~-~-~Vvl~g~~~-e 362 (467)
++++....+.. +..++.-..++.++|--|+.+.. + .|..+.+.+|++.|.+ . + .+++..+.- .
T Consensus 125 i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~--------~--~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp 194 (311)
T PF06258_consen 125 ITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKH--------Y--RWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTP 194 (311)
T ss_pred CCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCC--------c--ccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCc
Confidence 45555544433 33333322356666554433221 2 4999977777766653 3 3 366666543 3
Q ss_pred HHHHHHHHhcC---CCCcc--cCCHHHHHHHHHhcCE-EEeCCchHH-HHHHhcCCCEEEEeCCC
Q 012283 363 REGVEDVVGDD---ASIVF--ITTPGQLAALINDSAG-VIATNTAAI-QLANAREKPSIALFSSE 420 (467)
Q Consensus 363 ~~~~~~i~~~~---~~~~~--~~sL~el~alI~~a~l-vIg~DTG~~-HLAaAlg~PtVaLFg~t 420 (467)
.+..+.+.+.+ +.+.+ ...-.=+.++++.||. +||.||--| -=|++.|+|+..+--+.
T Consensus 195 ~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 195 PEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 33444444444 22312 2223336678888875 577888655 56889999998886655
No 105
>PRK06849 hypothetical protein; Provisional
Probab=52.74 E-value=59 Score=33.52 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=54.2
Q ss_pred CccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHH-HHHHHhH
Q 012283 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYT-DILGVMK 199 (467)
Q Consensus 121 ~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~-~l~~~Lr 199 (467)
..|+|||+-.+ .-.+.+++|+++++ |.++.++..... .+.....++++.+.++... .....+. .++..++
T Consensus 3 ~~~~VLI~G~~----~~~~l~iar~l~~~--G~~Vi~~d~~~~-~~~~~s~~~d~~~~~p~p~--~d~~~~~~~L~~i~~ 73 (389)
T PRK06849 3 TKKTVLITGAR----APAALELARLFHNA--GHTVILADSLKY-PLSRFSRAVDGFYTIPSPR--WDPDAYIQALLSIVQ 73 (389)
T ss_pred CCCEEEEeCCC----cHHHHHHHHHHHHC--CCEEEEEeCCch-HHHHHHHhhhheEEeCCCC--CCHHHHHHHHHHHHH
Confidence 46889888433 33688999999998 888888766542 3335566788877765322 1222333 3445567
Q ss_pred hCCCcEEEEccc
Q 012283 200 NRYYDMVLSTKL 211 (467)
Q Consensus 200 ~~~yDlvI~l~~ 211 (467)
+++.|++|-+..
T Consensus 74 ~~~id~vIP~~e 85 (389)
T PRK06849 74 RENIDLLIPTCE 85 (389)
T ss_pred HcCCCEEEECCh
Confidence 788999999773
No 106
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=52.64 E-value=3.3e+02 Score=29.34 Aligned_cols=78 Identities=9% Similarity=0.090 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCC--C-CcccCCHHHHHHHHHhcCEEEeCCc----hHHHH-HH
Q 012283 339 QVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA--S-IVFITTPGQLAALINDSAGVIATNT----AAIQL-AN 407 (467)
Q Consensus 339 e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~--~-~~~~~sL~el~alI~~a~lvIg~DT----G~~HL-Aa 407 (467)
+...+.+..+.++. .+++.|...+.+.++++++..+ + +.+.. -.++..+++.|+++|.+-. |.+.+ |.
T Consensus 335 ~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G-~~~~~~~~~~adv~v~pS~~Egfgl~~lEAm 413 (500)
T TIGR02918 335 DWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKG-HRNLSEVYKDYELYLSASTSEGFGLTLMEAV 413 (500)
T ss_pred HHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcC-CCCHHHHHHhCCEEEEcCccccccHHHHHHH
Confidence 34444444444443 2444555555666666655432 1 22211 2367788999999998653 44444 66
Q ss_pred hcCCCEEEEe
Q 012283 408 AREKPSIALF 417 (467)
Q Consensus 408 Alg~PtVaLF 417 (467)
|.|+|+|+-=
T Consensus 414 a~G~PVI~~d 423 (500)
T TIGR02918 414 GSGLGMIGFD 423 (500)
T ss_pred HhCCCEEEec
Confidence 9999999953
No 107
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=50.51 E-value=20 Score=31.91 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCEEEeCC-chHHHHHHhcCCCEEEE
Q 012283 382 PGQLAALINDSAGVIATN-TAAIQLANAREKPSIAL 416 (467)
Q Consensus 382 L~el~alI~~a~lvIg~D-TG~~HLAaAlg~PtVaL 416 (467)
..++..+++.||++||-= .|.+-=|.+.|+|+|.+
T Consensus 63 ~~~m~~~m~~aDlvIs~aG~~Ti~E~l~~g~P~I~i 98 (167)
T PF04101_consen 63 VDNMAELMAAADLVISHAGAGTIAEALALGKPAIVI 98 (167)
T ss_dssp SSSHHHHHHHHSEEEECS-CHHHHHHHHCT--EEEE
T ss_pred hhhHHHHHHHcCEEEeCCCccHHHHHHHcCCCeecc
Confidence 345899999999999954 57889999999999877
No 108
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=50.27 E-value=85 Score=33.09 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhCC--CEEEecCcccHHHHHHH---HhcC---CCC--cccCCHHHHHHHHHh--cCEEEeCCchHHHHHH
Q 012283 340 VWAEIANGLREFR--PLFVIPHEKEREGVEDV---VGDD---ASI--VFITTPGQLAALIND--SAGVIATNTAAIQLAN 407 (467)
Q Consensus 340 ~~~~Li~~L~~~~--~Vvl~g~~~e~~~~~~i---~~~~---~~~--~~~~sL~el~alI~~--a~lvIg~DTG~~HLAa 407 (467)
+...+++.|.+-| ++.+..+.......+++ .... .+. ....++.++...++. .|++||+..+ -|+|.
T Consensus 314 ~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~~-~~~a~ 392 (435)
T cd01974 314 FLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTYG-KYIAR 392 (435)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEEEECccH-HHHHH
Confidence 3457778887767 33333222333333333 3321 121 225678888887766 7899999986 89999
Q ss_pred hcCCCEEEEeCCC
Q 012283 408 AREKPSIALFSSE 420 (467)
Q Consensus 408 Alg~PtVaLFg~t 420 (467)
-+|+|.+.+--|.
T Consensus 393 ~~gip~v~~~~P~ 405 (435)
T cd01974 393 DTDIPLVRFGFPI 405 (435)
T ss_pred HhCCCEEEeeCCc
Confidence 9999998664454
No 109
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=49.85 E-value=18 Score=37.78 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=45.1
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCC
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNK 171 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p 171 (467)
.||||++..+..|++.=+..+.++|+++ +.+|++.|...+++.++...
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~--gheV~~~~~~~~~~~ve~ag 48 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR--GHEVVFASTGKFKEFVEAAG 48 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc--CCeEEEEeCHHHHHHHHHhC
Confidence 3899999998899999999999999998 89999999999999999887
No 110
>PLN02275 transferase, transferring glycosyl groups
Probab=49.23 E-value=42 Score=34.28 Aligned_cols=64 Identities=8% Similarity=0.080 Sum_probs=40.8
Q ss_pred EEEecCcccHHHHHHHHhcC--CCCcc---cCCHHHHHHHHHhcCEEEeCC--c-h-----HHHHHHhcCCCEEEEe
Q 012283 354 LFVIPHEKEREGVEDVVGDD--ASIVF---ITTPGQLAALINDSAGVIATN--T-A-----AIQLANAREKPSIALF 417 (467)
Q Consensus 354 Vvl~g~~~e~~~~~~i~~~~--~~~~~---~~sL~el~alI~~a~lvIg~D--T-G-----~~HLAaAlg~PtVaLF 417 (467)
+++.|...+++.+++..+.. .++.+ ..+-.++..+++.||++|..- + | .+==|-|.|+|+|+--
T Consensus 264 l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~ 340 (371)
T PLN02275 264 FIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVS 340 (371)
T ss_pred EEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEec
Confidence 44555545566666555433 23332 235689999999999999531 1 1 2334789999999953
No 111
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=49.21 E-value=1.1e+02 Score=32.49 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhCC--C-EEEecCc----ccHHHHHHHHhcCC--C-CcccCCHHHHHHHHH----hcCEEEeCCchHHH
Q 012283 339 QVWAEIANGLREFR--P-LFVIPHE----KEREGVEDVVGDDA--S-IVFITTPGQLAALIN----DSAGVIATNTAAIQ 404 (467)
Q Consensus 339 e~~~~Li~~L~~~~--~-Vvl~g~~----~e~~~~~~i~~~~~--~-~~~~~sL~el~alI~----~a~lvIg~DTG~~H 404 (467)
++-..+++.|.+-+ + +++.+.. .+.+..+++....+ . +....++.++...++ .+|++||+.-+ -|
T Consensus 322 ~~~~~l~~~l~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~~~d~~~l~~~i~~~~~~~Dliig~s~~-~~ 400 (461)
T TIGR02931 322 DLVIGLAEFCLDLEMKPVLLLLGDDNSGYVDDPRIKALQENVDYDMEIVTNADFWELESRIKNQGLELDLILGHSKG-RF 400 (461)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCcccchhHHHHHHHhhCCCCceEEeCCCHHHHHHHHHhcCCCCCEEEECcch-HH
Confidence 34457777777666 3 3344432 23455555544432 1 233678999999999 59999999987 89
Q ss_pred HHHhcCCCEEEEeCCC
Q 012283 405 LANAREKPSIALFSSE 420 (467)
Q Consensus 405 LAaAlg~PtVaLFg~t 420 (467)
+|..+|+|.+-+--|.
T Consensus 401 ~a~k~gip~~~~g~Pv 416 (461)
T TIGR02931 401 ISIDYNIPMVRVGFPT 416 (461)
T ss_pred HHHHcCCCEEEecCcc
Confidence 9999999999884444
No 112
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=48.26 E-value=94 Score=31.70 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhhCC-CEEEecCcccHHHHHHHHhcCC-C-Ccc---cCCH-----------HHHHHHHH--hcCEEEeC
Q 012283 338 IQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDA-S-IVF---ITTP-----------GQLAALIN--DSAGVIAT 398 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~-~Vvl~g~~~e~~~~~~i~~~~~-~-~~~---~~sL-----------~el~alI~--~a~lvIg~ 398 (467)
.-.|..+++.|.++| .|++..-.. +...++.+.++ + ..+ ..++ .++..+++ +-|++||-
T Consensus 13 vhfFk~~I~eL~~~GheV~it~R~~--~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~ 90 (335)
T PF04007_consen 13 VHFFKNIIRELEKRGHEVLITARDK--DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAISF 90 (335)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEecc--chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEec
Confidence 457899999999998 355554433 33444544432 1 111 1221 35666676 68899998
Q ss_pred Cch-HHHHHHhcCCCEEEEeCCC
Q 012283 399 NTA-AIQLANAREKPSIALFSSE 420 (467)
Q Consensus 399 DTG-~~HLAaAlg~PtVaLFg~t 420 (467)
.|- ..|+|.++|+|+|.++=..
T Consensus 91 ~s~~a~~va~~lgiP~I~f~D~e 113 (335)
T PF04007_consen 91 GSPEAARVAFGLGIPSIVFNDTE 113 (335)
T ss_pred CcHHHHHHHHHhCCCeEEEecCc
Confidence 875 4569999999999998643
No 113
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=47.77 E-value=1.2e+02 Score=30.58 Aligned_cols=85 Identities=21% Similarity=0.245 Sum_probs=49.7
Q ss_pred ecCHHHHHHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCCC-EEEecCcccHHHHH
Q 012283 289 SISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRP-LFVIPHEKEREGVE 367 (467)
Q Consensus 289 ~l~~~~~~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~~-Vvl~g~~~e~~~~~ 367 (467)
.+++++.+...+.+..+ +.+..+|++++ |. .. ..|.+.|++|++.+++.+. |++=.+. +.+.
T Consensus 110 ~is~~~~~~~l~~~~~~-l~~~d~VvlsG----Sl--------P~-g~~~d~y~~li~~~~~~g~~vilD~Sg---~~L~ 172 (310)
T COG1105 110 EISEAELEQFLEQLKAL-LESDDIVVLSG----SL--------PP-GVPPDAYAELIRILRQQGAKVILDTSG---EALL 172 (310)
T ss_pred CCCHHHHHHHHHHHHHh-cccCCEEEEeC----CC--------CC-CCCHHHHHHHHHHHHhcCCeEEEECCh---HHHH
Confidence 36777766655555552 23467888874 11 11 4899999999999999984 5443332 2222
Q ss_pred HHHhcCCCCcccCCHHHHHHHHHh
Q 012283 368 DVVGDDASIVFITTPGQLAALIND 391 (467)
Q Consensus 368 ~i~~~~~~~~~~~sL~el~alI~~ 391 (467)
+..+.-|.++ +.+..|+.+++..
T Consensus 173 ~~L~~~P~lI-KPN~~EL~~~~g~ 195 (310)
T COG1105 173 AALEAKPWLI-KPNREELEALFGR 195 (310)
T ss_pred HHHccCCcEE-ecCHHHHHHHhCC
Confidence 3333334332 5566666666543
No 114
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=47.69 E-value=56 Score=33.01 Aligned_cols=114 Identities=17% Similarity=0.098 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhhC-----C-CEEEecCccc--------HHHHHHHHhc-C---CCCcc--cCCHHHHHHHHHhcCEEEe
Q 012283 338 IQVWAEIANGLREF-----R-PLFVIPHEKE--------REGVEDVVGD-D---ASIVF--ITTPGQLAALINDSAGVIA 397 (467)
Q Consensus 338 ~e~~~~Li~~L~~~-----~-~Vvl~g~~~e--------~~~~~~i~~~-~---~~~~~--~~sL~el~alI~~a~lvIg 397 (467)
.+...+.++.+.++ . .++++|+... .+.++++.+. . .++.+ ..+-.++..+++.||++|-
T Consensus 226 ~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~ 305 (392)
T cd03805 226 IALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLY 305 (392)
T ss_pred hHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEE
Confidence 45666777777654 2 2444554322 1333333333 1 22333 4556788999999999995
Q ss_pred CCc-----hHHHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 398 TNT-----AAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 398 ~DT-----G~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
+.. ..+-=|.|.|+|+|+-=.+... ... -- +... . +... +++++.+++.+++..
T Consensus 306 ~s~~E~~g~~~lEAma~G~PvI~s~~~~~~-e~i-~~-~~~g--~------~~~~-~~~~~a~~i~~l~~~ 364 (392)
T cd03805 306 TPSNEHFGIVPLEAMYAGKPVIACNSGGPL-ETV-VD-GETG--F------LCEP-TPEEFAEAMLKLAND 364 (392)
T ss_pred CCCcCCCCchHHHHHHcCCCEEEECCCCcH-HHh-cc-CCce--E------EeCC-CHHHHHHHHHHHHhC
Confidence 321 2234488999999996433211 111 11 1111 1 1222 678888888877654
No 115
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=47.20 E-value=93 Score=30.41 Aligned_cols=113 Identities=18% Similarity=0.091 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhCC---CEEEecC-cccHHHHHHH-Hhc--CCCCcc--cCCHHHHHHHHHhcCEEEeCC-----chHH
Q 012283 338 IQVWAEIANGLREFR---PLFVIPH-EKEREGVEDV-VGD--DASIVF--ITTPGQLAALINDSAGVIATN-----TAAI 403 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~-~~e~~~~~~i-~~~--~~~~~~--~~sL~el~alI~~a~lvIg~D-----TG~~ 403 (467)
.+...+.+..+.+.+ .++++|. ..+.+..... ... ..++.. ..+-.++..+++.||++|.+- +..+
T Consensus 210 ~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~ 289 (365)
T cd03809 210 LERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPV 289 (365)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCH
Confidence 567778888887764 3555554 3332322222 111 112222 345589999999999998662 2345
Q ss_pred HHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 404 QLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 404 HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
-=|.+.|+|+|+--.+..+ ... ++..+ .+..-+++++.+++.+++..
T Consensus 290 ~Ea~a~G~pvI~~~~~~~~-e~~----~~~~~--------~~~~~~~~~~~~~i~~l~~~ 336 (365)
T cd03809 290 LEAMACGTPVIASNISSLP-EVA----GDAAL--------YFDPLDPEALAAAIERLLED 336 (365)
T ss_pred HHHhcCCCcEEecCCCCcc-cee----cCcee--------eeCCCCHHHHHHHHHHHhcC
Confidence 5688999999983222111 111 11111 12223688888888887653
No 116
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=47.03 E-value=42 Score=28.54 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=43.4
Q ss_pred EEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCC
Q 012283 125 CCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLD 182 (467)
Q Consensus 125 ILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~ 182 (467)
|||.-.+.-||+.=..++.++|+++ +.++.+.+.+...+.++.. +++ ...++..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r--Gh~V~~~~~~~~~~~v~~~-Gl~-~~~~~~~ 54 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR--GHEVRLATPPDFRERVEAA-GLE-FVPIPGD 54 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT--T-EEEEEETGGGHHHHHHT-T-E-EEESSSC
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc--CCeEEEeecccceeccccc-Cce-EEEecCC
Confidence 6888889999999999999999998 8899999999999988654 443 4455544
No 117
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=46.72 E-value=74 Score=31.94 Aligned_cols=117 Identities=10% Similarity=0.059 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCC---CCcccCCHHHHHHHHHhcCEEEeCC-----chHHHHH
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SIVFITTPGQLAALINDSAGVIATN-----TAAIQLA 406 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~---~~~~~~sL~el~alI~~a~lvIg~D-----TG~~HLA 406 (467)
.+...+.+..+.++. .++++|...+....+....... .+.+.....++..+++.|+++|.+- ...+-=|
T Consensus 219 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEA 298 (372)
T cd04949 219 LDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEA 298 (372)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHH
Confidence 445555556665543 2444444444444444443222 1222224568899999999999764 2345558
Q ss_pred HhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHhh
Q 012283 407 NAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNESL 464 (467)
Q Consensus 407 aAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~~ 464 (467)
.+.|+|+|+.=.+..+.....+ +..+. + +..-+++++.+++..++..+
T Consensus 299 ma~G~PvI~~~~~~g~~~~v~~--~~~G~-l-------v~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 299 LSHGLPVISYDVNYGPSEIIED--GENGY-L-------VPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred HhCCCCEEEecCCCCcHHHccc--CCCce-E-------eCCCcHHHHHHHHHHHHcCH
Confidence 8999999984211101111111 11221 1 12346888888888887643
No 118
>COG1158 Rho Transcription termination factor [Transcription]
Probab=45.56 E-value=1.4e+02 Score=30.50 Aligned_cols=100 Identities=13% Similarity=0.141 Sum_probs=66.9
Q ss_pred ccccccccccCCccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEE-EEEcCCchhhhhcCCCCC-EEEEecCCCC---
Q 012283 110 EIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLID-VIASARGKQTFELNKNVR-WANVYDLDDD--- 184 (467)
Q Consensus 110 ~~~~~~~~~r~~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~-ll~~~~~~~l~~~~p~Id-~ii~~~~~~~--- 184 (467)
.+-.|...+ +.-.|-||+.+-.-|-.++..-+..+|-.++|++++. ++..++-.++-...-.|. +|+.-..+..
T Consensus 162 RviDL~~PI-GkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaSTFDepp~~ 240 (422)
T COG1158 162 RVIDLISPI-GKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPPSR 240 (422)
T ss_pred HHHhhhccc-CCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHhhcceEEeecCCCcchh
Confidence 333444333 2346999999999999999999999999999999854 556777666665544443 4554333321
Q ss_pred CCChHHH-HHHHHHhHhCCCcEEEEcc
Q 012283 185 WPEPAEY-TDILGVMKNRYYDMVLSTK 210 (467)
Q Consensus 185 ~~~~~~~-~~l~~~Lr~~~yDlvI~l~ 210 (467)
.-..+++ +.-.+.|-.++.|+||-+.
T Consensus 241 HvqVAE~viEkAKRlVE~~kDVVILLD 267 (422)
T COG1158 241 HVQVAEMVIEKAKRLVEHGKDVVILLD 267 (422)
T ss_pred hHHHHHHHHHHHHHHHHcCCcEEEEeh
Confidence 0112222 3445667778999999988
No 119
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=44.22 E-value=1.3e+02 Score=31.98 Aligned_cols=77 Identities=21% Similarity=0.203 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhCC---CEEEec-CcccHHHHH---HHHhcCC---CCcccCCHHHHHHHHHhcCEEEeCC-----chH
Q 012283 338 IQVWAEIANGLREFR---PLFVIP-HEKEREGVE---DVVGDDA---SIVFITTPGQLAALINDSAGVIATN-----TAA 402 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g-~~~e~~~~~---~i~~~~~---~~~~~~sL~el~alI~~a~lvIg~D-----TG~ 402 (467)
.+.+.+.++.+.++. .++++| ++.+.++.+ ++.+... ++.+ +.-.++..+++.||++|-+- ...
T Consensus 308 ~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f-~G~~~v~~~l~~aDv~vlpS~~Eg~p~~ 386 (475)
T cd03813 308 IKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKF-TGFQNVKEYLPKLDVLVLTSISEGQPLV 386 (475)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEE-cCCccHHHHHHhCCEEEeCchhhcCChH
Confidence 456666666666553 244444 433433333 3333221 2222 22467888999999999653 236
Q ss_pred HHHHHhcCCCEEE
Q 012283 403 IQLANAREKPSIA 415 (467)
Q Consensus 403 ~HLAaAlg~PtVa 415 (467)
+-=|-|.|+|+|+
T Consensus 387 vlEAma~G~PVVa 399 (475)
T cd03813 387 ILEAMAAGIPVVA 399 (475)
T ss_pred HHHHHHcCCCEEE
Confidence 7778999999999
No 120
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=43.93 E-value=1.3e+02 Score=25.00 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhCCCEEEecCcccH-------HHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeC------CchHH-
Q 012283 338 IQVWAEIANGLREFRPLFVIPHEKER-------EGVEDVVGDDASIVFITTPGQLAALINDSAGVIAT------NTAAI- 403 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~~Vvl~g~~~e~-------~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~------DTG~~- 403 (467)
.+...++.+.|.+.+.-++.+...+. ...+++ ...-...|+.||++|.+ |+|..
T Consensus 13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i------------~~~d~~~i~~~D~via~l~~~~~d~Gt~~ 80 (113)
T PF05014_consen 13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREI------------FERDLEGIRECDIVIANLDGFRPDSGTAF 80 (113)
T ss_dssp HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHH------------HHHHHHHHHHSSEEEEEECSSS--HHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHH------------HHHHHHHHHHCCEEEEECCCCCCCCcHHH
Confidence 45667788888777754445542211 111111 13346789999999864 56653
Q ss_pred --HHHHhcCCCEEEEeCCCCC
Q 012283 404 --QLANAREKPSIALFSSELK 422 (467)
Q Consensus 404 --HLAaAlg~PtVaLFg~t~p 422 (467)
=.|.|+|+|++++......
T Consensus 81 ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 81 ELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHHHCCCEEEEEEcCCcc
Confidence 4789999999999987643
No 121
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=41.40 E-value=2.4e+02 Score=27.87 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEEEecCcc--cHHHHHHHHhc
Q 012283 296 EVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEK--EREGVEDVVGD 372 (467)
Q Consensus 296 ~~a~~~l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~Vvl~g~~~--e~~~~~~i~~~ 372 (467)
..+++++.+. ..|+|.||-+.. -|-.+..+++++.+.++. ++|+-+..- -.+..+.+...
T Consensus 93 ~~i~k~L~Rl-----havVIGPGLGRd------------p~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~ 155 (306)
T KOG3974|consen 93 DIIEKLLQRL-----HAVVIGPGLGRD------------PAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGG 155 (306)
T ss_pred hHHHHHHhhe-----eEEEECCCCCCC------------HHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhcc
Confidence 3344555543 468888864431 265678999999999887 554333210 01122224444
Q ss_pred CCCCcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCCCCCccccC
Q 012283 373 DASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPN 429 (467)
Q Consensus 373 ~~~~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~p~~~~~P~ 429 (467)
+++.+.+.+.-|+--|....-.=.-+-+...|||+.++-=+|..=|..+. ..| |+
T Consensus 156 ~~~viLTPNvvEFkRLcd~~l~~~d~~~~~~~L~~~l~nv~vvqKG~~D~-ils-~~ 210 (306)
T KOG3974|consen 156 YPKVILTPNVVEFKRLCDAELDKVDSHSQMQHLAAELMNVTVVQKGESDK-ILS-PD 210 (306)
T ss_pred CceeeeCCcHHHHHHHHHHhhccccchHHHHHHHHHhcCeEEEEecCCce-eeC-CC
Confidence 55444455666766665554433334466789999998888888888864 233 65
No 122
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=41.36 E-value=45 Score=30.76 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=36.9
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhh
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~ 168 (467)
.|||++..+|++|=.- +.-+++.|++. +++|+++.++..+.++.
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~--g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKR--GYQVTVLMTKAATKFIT 44 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHC--CCEEEEEEChhHHHHcC
Confidence 4789999999999665 78889999886 78999999998776654
No 123
>PRK05920 aromatic acid decarboxylase; Validated
Probab=41.13 E-value=43 Score=31.59 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=39.2
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhh
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~ 168 (467)
.|||++-.+|++|= +.+..+++.|++. +++|.+++++....++.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~--g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAA--DYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHC--CCEEEEEEChhHHHHHH
Confidence 47899999999999 5999999999987 89999999998877665
No 124
>PRK12608 transcription termination factor Rho; Provisional
Probab=41.03 E-value=1.4e+02 Score=30.95 Aligned_cols=91 Identities=10% Similarity=0.026 Sum_probs=62.0
Q ss_pred CccEEEEEecCCchhHHhHHHHHHHHHHHCCCcE-EEEEEcCCchhhhhcCCCCCEEEEecCCC--CCCCh---HHHHHH
Q 012283 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVL-IDVIASARGKQTFELNKNVRWANVYDLDD--DWPEP---AEYTDI 194 (467)
Q Consensus 121 ~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~-I~ll~~~~~~~l~~~~p~Id~ii~~~~~~--~~~~~---~~~~~l 194 (467)
.-.|+||+-..|-|=..+..-+++.+..++|+.. +.+++..+..++-+....+..++.....+ ..... ......
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999987 56577766554444333333333333211 11111 123566
Q ss_pred HHHhHhCCCcEEEEccc
Q 012283 195 LGVMKNRYYDMVLSTKL 211 (467)
Q Consensus 195 ~~~Lr~~~yDlvI~l~~ 211 (467)
+..++.+.+|++|.+..
T Consensus 212 Ae~f~~~GkdVVLvlDs 228 (380)
T PRK12608 212 AKRLVEQGKDVVILLDS 228 (380)
T ss_pred HHHHHHcCCCEEEEEeC
Confidence 77888999999998884
No 125
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=40.88 E-value=1.5e+02 Score=30.29 Aligned_cols=75 Identities=12% Similarity=-0.029 Sum_probs=45.6
Q ss_pred cCCHHHHHHHHHhcCEEEeCCc-----hHHHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHH
Q 012283 379 ITTPGQLAALINDSAGVIATNT-----AAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAV 453 (467)
Q Consensus 379 ~~sL~el~alI~~a~lvIg~DT-----G~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V 453 (467)
..+-.++..+++.||++|.... -.+-=|.|.|+|+|+-=.+..+ ... -- +.... + +..-+++++
T Consensus 288 ~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~-e~i-~~-~~~G~-l-------v~~~d~~~l 356 (396)
T cd03818 288 RVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVR-EVI-TD-GENGL-L-------VDFFDPDAL 356 (396)
T ss_pred CCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCch-hhc-cc-CCceE-E-------cCCCCHHHH
Confidence 3456899999999999996543 1456788999999984222111 111 00 11121 1 122358888
Q ss_pred HHHHHHHHHhh
Q 012283 454 LNAMQIFNESL 464 (467)
Q Consensus 454 ~~ai~~ll~~~ 464 (467)
.+++.+++..+
T Consensus 357 a~~i~~ll~~~ 367 (396)
T cd03818 357 AAAVIELLDDP 367 (396)
T ss_pred HHHHHHHHhCH
Confidence 88888887643
No 126
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=40.40 E-value=2.2e+02 Score=29.86 Aligned_cols=81 Identities=14% Similarity=0.055 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhhCC--CEE-EecCcc--cHHHHHHHHhcC-CCCc--ccCCHHHHHHHHHh--cCEEEeCCchHHHHHHh
Q 012283 339 QVWAEIANGLREFR--PLF-VIPHEK--EREGVEDVVGDD-ASIV--FITTPGQLAALIND--SAGVIATNTAAIQLANA 408 (467)
Q Consensus 339 e~~~~Li~~L~~~~--~Vv-l~g~~~--e~~~~~~i~~~~-~~~~--~~~sL~el~alI~~--a~lvIg~DTG~~HLAaA 408 (467)
++...+++.|.+-+ ++. ..+... ..+.++++.... .+.. ...++.|+..++++ +|++||+.-+ -|+|.-
T Consensus 310 ~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~~~dliiG~s~~-~~~a~~ 388 (429)
T cd03466 310 DFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKELKIDVLIGNSYG-RRIAEK 388 (429)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhcCCCEEEECchh-HHHHHH
Confidence 35557777777767 322 222221 133333333322 2222 25678888888866 7899999987 699999
Q ss_pred cCCCEEEEeCCC
Q 012283 409 REKPSIALFSSE 420 (467)
Q Consensus 409 lg~PtVaLFg~t 420 (467)
+|+|.+-+.-|.
T Consensus 389 ~~ip~~~~~~P~ 400 (429)
T cd03466 389 LGIPLIRIGFPI 400 (429)
T ss_pred cCCCEEEecCCc
Confidence 999999776564
No 127
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=39.25 E-value=2.1e+02 Score=28.94 Aligned_cols=74 Identities=12% Similarity=0.008 Sum_probs=49.0
Q ss_pred HHHHHHhhhC-C----CEEEecCc-ccHHHHHHHHhc----CC--CCc---ccCCHHHHHHHHHhcCEEEeCCc-----h
Q 012283 342 AEIANGLREF-R----PLFVIPHE-KEREGVEDVVGD----DA--SIV---FITTPGQLAALINDSAGVIATNT-----A 401 (467)
Q Consensus 342 ~~Li~~L~~~-~----~Vvl~g~~-~e~~~~~~i~~~----~~--~~~---~~~sL~el~alI~~a~lvIg~DT-----G 401 (467)
.++++.|.+. + .++.++-| .+.++++++... ++ +.. ..+++.|..++++.||+.|-+=- |
T Consensus 162 ie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiG 241 (322)
T PRK02797 162 IEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIG 241 (322)
T ss_pred HHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHh
Confidence 3555555443 2 24444443 677787777643 33 111 26889999999999999987643 6
Q ss_pred HHHHHHhcCCCEEE
Q 012283 402 AIQLANAREKPSIA 415 (467)
Q Consensus 402 ~~HLAaAlg~PtVa 415 (467)
.+=+.-.+|+|++.
T Consensus 242 nl~lLi~~G~~v~l 255 (322)
T PRK02797 242 TLCLLIQLGKPVVL 255 (322)
T ss_pred HHHHHHHCCCcEEE
Confidence 67777788999764
No 128
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=39.22 E-value=2.3e+02 Score=26.55 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=48.0
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEE-cCCch---hhhhcCCCCCEEEEecCCCCCCChHHH-HHHHHH
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIA-SARGK---QTFELNKNVRWANVYDLDDDWPEPAEY-TDILGV 197 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~-~~~~~---~l~~~~p~Id~ii~~~~~~~~~~~~~~-~~l~~~ 197 (467)
|||.|+..|. |.+ ..++++++.+..-.++|.+++ +.... ..++. -+|. ++.++.... ..-..+ -.++..
T Consensus 2 ~ki~vl~sg~-gs~--~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~-~gIp-~~~~~~~~~-~~~~~~~~~~~~~ 75 (200)
T PRK05647 2 KRIVVLASGN-GSN--LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEA-AGIP-TFVLDHKDF-PSREAFDAALVEA 75 (200)
T ss_pred ceEEEEEcCC-Chh--HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHH-cCCC-EEEECcccc-CchhHhHHHHHHH
Confidence 7888887754 544 448888888876667888764 43322 23332 2454 333343221 111111 245667
Q ss_pred hHhCCCcEEEEccc
Q 012283 198 MKNRYYDMVLSTKL 211 (467)
Q Consensus 198 Lr~~~yDlvI~l~~ 211 (467)
|++.++|+++....
T Consensus 76 l~~~~~D~iv~~~~ 89 (200)
T PRK05647 76 LDAYQPDLVVLAGF 89 (200)
T ss_pred HHHhCcCEEEhHHh
Confidence 88889999998664
No 129
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=39.16 E-value=1.2e+02 Score=29.88 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhhCCC-EEEec---------CcccHHHHHHHHhcCCC--Cc--c----------cCCHHHHHHHHHhcCE
Q 012283 339 QVWAEIANGLREFRP-LFVIP---------HEKEREGVEDVVGDDAS--IV--F----------ITTPGQLAALINDSAG 394 (467)
Q Consensus 339 e~~~~Li~~L~~~~~-Vvl~g---------~~~e~~~~~~i~~~~~~--~~--~----------~~sL~el~alI~~a~l 394 (467)
+.+.+.++.|.+.+. |++.. +..++++++++.+.+.+ +. . .+...+...+=++-+.
T Consensus 14 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~rlL~~ld~~~~~~~pK~ 93 (282)
T cd07025 14 ERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGANRLLPYLDYDLIRANPKI 93 (282)
T ss_pred HHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHHHhhhhCCHHHHhhCCeE
Confidence 788899999988873 44332 34567788888776543 21 1 1222234444488999
Q ss_pred EEe-CCchHHHHHHhcCCCEEEEeCCC
Q 012283 395 VIA-TNTAAIQLANAREKPSIALFSSE 420 (467)
Q Consensus 395 vIg-~DTG~~HLAaAlg~PtVaLFg~t 420 (467)
+|| .|...+|+|-...+-.++++||.
T Consensus 94 ~iGySDiTaL~~~l~~~~g~~t~hGp~ 120 (282)
T cd07025 94 FVGYSDITALHLALYAKTGLVTFHGPM 120 (282)
T ss_pred EEEecHHHHHHHHHHHhcCceEEECcc
Confidence 999 79999999998888888899974
No 130
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=38.98 E-value=1.5e+02 Score=30.89 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=47.9
Q ss_pred HHHHHhhhCC-CEEEecCc-ccHHHHHHHHhcCC-CC--cccCCHHHHHHHHHh--cCEEEeCCchHHHHHHhcCCCEEE
Q 012283 343 EIANGLREFR-PLFVIPHE-KEREGVEDVVGDDA-SI--VFITTPGQLAALIND--SAGVIATNTAAIQLANAREKPSIA 415 (467)
Q Consensus 343 ~Li~~L~~~~-~Vvl~g~~-~e~~~~~~i~~~~~-~~--~~~~sL~el~alI~~--a~lvIg~DTG~~HLAaAlg~PtVa 415 (467)
.+++.|.+-| .|+.++.+ .+.+..+.+....+ .. ....+..++...++. .|++||+ |.--|+|..+|+|.+-
T Consensus 301 ~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~e~~~~i~~~~pDl~ig~-s~~~~~a~~~gip~~~ 379 (410)
T cd01968 301 SLVSALQDLGMEVVATGTQKGTKEDYERIKELLGEGTVIVDDANPRELKKLLKEKKADLLVAG-GKERYLALKLGIPFCD 379 (410)
T ss_pred HHHHHHHHCCCEEEEEecccCCHHHHHHHHHHhCCCcEEEeCCCHHHHHHHHhhcCCCEEEEC-CcchhhHHhcCCCEEE
Confidence 4666666667 34433322 22333334444443 21 225677888887776 8999999 5557999999999997
Q ss_pred EeCCC
Q 012283 416 LFSSE 420 (467)
Q Consensus 416 LFg~t 420 (467)
+.+..
T Consensus 380 ~~~~~ 384 (410)
T cd01968 380 INHER 384 (410)
T ss_pred ccccc
Confidence 75543
No 131
>PRK08462 biotin carboxylase; Validated
Probab=38.74 E-value=91 Score=32.79 Aligned_cols=83 Identities=13% Similarity=0.033 Sum_probs=53.2
Q ss_pred CCccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhH
Q 012283 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMK 199 (467)
Q Consensus 120 ~~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr 199 (467)
...+||||+-.|-+ ..|++++.|+. |.++..+++..... .......|+.+.+.....-.+....-.++...+
T Consensus 2 ~~~k~ili~~~g~~-----~~~~~~~~~~~--G~~~v~~~~~~d~~-~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~ 73 (445)
T PRK08462 2 KEIKRILIANRGEI-----ALRAIRTIQEM--GKEAIAIYSTADKD-ALYLKYADAKICIGGAKSSESYLNIPAIISAAE 73 (445)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHHHHc--CCCEEEEechhhcC-CchhhhCCEEEEeCCCchhcccCCHHHHHHHHH
Confidence 34689999887755 56999999998 78877776544321 122234577776643221112223345677778
Q ss_pred hCCCcEEEEcc
Q 012283 200 NRYYDMVLSTK 210 (467)
Q Consensus 200 ~~~yDlvI~l~ 210 (467)
+.+.|.++-..
T Consensus 74 ~~~~D~i~pg~ 84 (445)
T PRK08462 74 IFEADAIFPGY 84 (445)
T ss_pred HcCCCEEEECC
Confidence 88999999876
No 132
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=38.53 E-value=1.7e+02 Score=25.65 Aligned_cols=104 Identities=20% Similarity=0.287 Sum_probs=59.8
Q ss_pred HHHHhhhCC-CEEEecCcccHHH----HHHHHhcCCCCcc------cCCHHHHHHHHHhcCEEEe------------CCc
Q 012283 344 IANGLREFR-PLFVIPHEKEREG----VEDVVGDDASIVF------ITTPGQLAALINDSAGVIA------------TNT 400 (467)
Q Consensus 344 Li~~L~~~~-~Vvl~g~~~e~~~----~~~i~~~~~~~~~------~~sL~el~alI~~a~lvIg------------~DT 400 (467)
+.+...+.+ +|.+.+.-.+.+. .++|...-++... +.+--.+--+|..||+||. .|-
T Consensus 14 I~~ga~~~~L~v~F~~PvtdH~~SD~~G~~iLG~e~~~fw~D~k~a~iN~iRT~~li~~aDvVVvrFGekYKQWNaAfDA 93 (141)
T PF11071_consen 14 IKEGAKAAGLPVEFTSPVTDHEASDDCGVDILGEEPNKFWRDHKGAKINAIRTRTLIEKADVVVVRFGEKYKQWNAAFDA 93 (141)
T ss_pred HHHHHHHcCCCeEEecCCCCchhhhhhhHHHhCCCCccccccchhhhhhHHHHHHHHhhCCEEEEEechHHHHHHHHhhH
Confidence 344444455 5665555444433 3345544443221 2333456789999999995 455
Q ss_pred hHHHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHH
Q 012283 401 AAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFN 461 (467)
Q Consensus 401 G~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll 461 (467)
| .|+|+|+|.|.|-++.. -+|. -+-. . .-..-.=+|++|++.+.-++
T Consensus 94 g---~a~AlgKplI~lh~~~~----~HpL-KEvd----a--~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 94 G---YAAALGKPLITLHPEEL----HHPL-KEVD----A--AALAVAETPEQVVEILRYVL 140 (141)
T ss_pred H---HHHHcCCCeEEecchhc----cccH-HHHh----H--hhHhhhCCHHHHHHHHHHHh
Confidence 5 69999999999988762 2465 2110 0 00111227899988876544
No 133
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=37.72 E-value=1.7e+02 Score=31.65 Aligned_cols=81 Identities=9% Similarity=0.053 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhhCC--CEEEecCccc---HHHHHHHHhcCC---CC--cccCCHHHHHHHHHh--cCEEEeCCchHHHHH
Q 012283 339 QVWAEIANGLREFR--PLFVIPHEKE---REGVEDVVGDDA---SI--VFITTPGQLAALIND--SAGVIATNTAAIQLA 406 (467)
Q Consensus 339 e~~~~Li~~L~~~~--~Vvl~g~~~e---~~~~~~i~~~~~---~~--~~~~sL~el~alI~~--a~lvIg~DTG~~HLA 406 (467)
++...+++.|.+-| ++.++.+... .+.++++....+ +. ....++.++..+|.. .|++||+--| -++|
T Consensus 373 d~~~~l~~fL~ElGmepv~v~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~~~Dl~~l~~~l~~~~~DlliG~s~~-k~~a 451 (515)
T TIGR01286 373 DFVMGLVRFVLELGCEPVHILCTNGTKRWKAEMKALLAASPYGQNATVWIGKDLWHLRSLVFTEPVDFLIGNSYG-KYIQ 451 (515)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhcCCCCCccEEEeCCCHHHHHHHHhhcCCCEEEECchH-HHHH
Confidence 45567888888777 3333333333 333444443222 11 124689999988755 9999999877 8999
Q ss_pred HhcCCCEEEEeCCC
Q 012283 407 NAREKPSIALFSSE 420 (467)
Q Consensus 407 aAlg~PtVaLFg~t 420 (467)
.-+|+|.|-+--|.
T Consensus 452 ~~~giPlir~gfPi 465 (515)
T TIGR01286 452 RDTLVPLIRIGFPI 465 (515)
T ss_pred HHcCCCEEEecCCe
Confidence 99999988765454
No 134
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=37.18 E-value=90 Score=36.99 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=54.4
Q ss_pred ccCCccEEEEEecCC--chhH----HhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHH
Q 012283 118 IRGDVRRCCCIISGG--VYEN----LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEY 191 (467)
Q Consensus 118 ~r~~~~rILII~~~~--IGD~----Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~ 191 (467)
.|.+++|||||-.|. ||.. .-.+.++++||+. +.++.++..... .+.......|+++..+.. .
T Consensus 2 ~~~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~--G~~vi~v~~np~-~~~~~~~~aD~~y~~p~~-----~--- 70 (1050)
T TIGR01369 2 KRTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEE--GYRVILVNSNPA-TIMTDPEMADKVYIEPLT-----P--- 70 (1050)
T ss_pred CCCCCcEEEEECCCcchhcchhcccchHHHHHHHHHHc--CCEEEEEecchh-hccCChhcCCEEEECCCC-----H---
Confidence 367899999999886 6732 4456789999987 888777665432 222333356777654432 1
Q ss_pred HHHHHHhHhCCCcEEEEcc
Q 012283 192 TDILGVMKNRYYDMVLSTK 210 (467)
Q Consensus 192 ~~l~~~Lr~~~yDlvI~l~ 210 (467)
-.+.+.+++++.|.++-..
T Consensus 71 ~~v~~ii~~e~~DaIlp~~ 89 (1050)
T TIGR01369 71 EAVEKIIEKERPDAILPTF 89 (1050)
T ss_pred HHHHHHHHHhCCCEEEECC
Confidence 1344556778999999865
No 135
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=37.06 E-value=1.1e+02 Score=36.27 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=53.1
Q ss_pred ccCCccEEEEEecCC--ch-----hHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHH
Q 012283 118 IRGDVRRCCCIISGG--VY-----ENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAE 190 (467)
Q Consensus 118 ~r~~~~rILII~~~~--IG-----D~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~ 190 (467)
.|.+++||||+-.|. || |. ..+-++++|++. |.++.++-... ..+.......|.++.-+. . .
T Consensus 3 ~~~~~~kvlviG~G~~~igq~~E~d~-sg~q~~~aL~e~--G~~vi~v~~np-~~~~~d~~~ad~~y~ep~-~----~-- 71 (1068)
T PRK12815 3 KDTDIQKILVIGSGPIVIGQAAEFDY-SGTQACLALKEE--GYQVVLVNPNP-ATIMTDPAPADTVYFEPL-T----V-- 71 (1068)
T ss_pred CCCCCCEEEEECCCcchhcchhhhhh-HHHHHHHHHHHc--CCEEEEEeCCc-chhhcCcccCCeeEECCC-C----H--
Confidence 478899999999886 46 44 677889999997 88877775543 223333334555543221 1 1
Q ss_pred HHHHHHHhHhCCCcEEEEcc
Q 012283 191 YTDILGVMKNRYYDMVLSTK 210 (467)
Q Consensus 191 ~~~l~~~Lr~~~yDlvI~l~ 210 (467)
-.+.+.++++++|.++-..
T Consensus 72 -e~l~~ii~~e~~D~Iip~~ 90 (1068)
T PRK12815 72 -EFVKRIIAREKPDALLATL 90 (1068)
T ss_pred -HHHHHHHHHhCcCEEEECC
Confidence 2344556788999999765
No 136
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=35.89 E-value=1.8e+02 Score=28.82 Aligned_cols=77 Identities=10% Similarity=0.020 Sum_probs=45.1
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhHhC
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~~ 201 (467)
+|||||.-.+.. + +++++|++..++.+|..+-.....+-.. ..|+.+..+... .....-.++..++++
T Consensus 1 ~~~vLv~g~~~~---~---~~~~~l~~~~~g~~vi~~d~~~~~~~~~---~~d~~~~~p~~~---~~~~~~~l~~~~~~~ 68 (326)
T PRK12767 1 MMNILVTSAGRR---V---QLVKALKKSLLKGRVIGADISELAPALY---FADKFYVVPKVT---DPNYIDRLLDICKKE 68 (326)
T ss_pred CceEEEecCCcc---H---HHHHHHHHhccCCEEEEECCCCcchhhH---hccCcEecCCCC---ChhHHHHHHHHHHHh
Confidence 478998866433 2 7899999987667766654443332222 344444444322 111222455566778
Q ss_pred CCcEEEEcc
Q 012283 202 YYDMVLSTK 210 (467)
Q Consensus 202 ~yDlvI~l~ 210 (467)
+.|.+|-..
T Consensus 69 ~id~ii~~~ 77 (326)
T PRK12767 69 KIDLLIPLI 77 (326)
T ss_pred CCCEEEECC
Confidence 899988765
No 137
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=35.67 E-value=1.6e+02 Score=30.08 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=51.6
Q ss_pred cEEEEEec-CCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhHhC
Q 012283 123 RRCCCIIS-GGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (467)
Q Consensus 123 ~rILII~~-~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~~ 201 (467)
++|||+-. +|+|= -+++..|... -++++-.|++...++.+... .|+++.|+.. ++...++.....
T Consensus 159 ~~vLv~ggsggVG~-----~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lG-Ad~vvdy~~~-------~~~e~~kk~~~~ 224 (347)
T KOG1198|consen 159 KSVLVLGGSGGVGT-----AAIQLAKHAG-AIKVVTACSKEKLELVKKLG-ADEVVDYKDE-------NVVELIKKYTGK 224 (347)
T ss_pred CeEEEEeCCcHHHH-----HHHHHHHhcC-CcEEEEEcccchHHHHHHcC-CcEeecCCCH-------HHHHHHHhhcCC
Confidence 47888765 47874 4455555553 57888899999999999885 6667665531 333333333345
Q ss_pred CCcEEEEcccC
Q 012283 202 YYDMVLSTKLA 212 (467)
Q Consensus 202 ~yDlvI~l~~~ 212 (467)
.||+|+|+-..
T Consensus 225 ~~DvVlD~vg~ 235 (347)
T KOG1198|consen 225 GVDVVLDCVGG 235 (347)
T ss_pred CccEEEECCCC
Confidence 79999999864
No 138
>PRK12678 transcription termination factor Rho; Provisional
Probab=35.65 E-value=1.1e+02 Score=33.70 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=61.8
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcE-EEEEEcCCchhhhhcCCCC-CEEEEecCCCC----CCChHHHHHHH
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVL-IDVIASARGKQTFELNKNV-RWANVYDLDDD----WPEPAEYTDIL 195 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~-I~ll~~~~~~~l~~~~p~I-d~ii~~~~~~~----~~~~~~~~~l~ 195 (467)
-.|.||+-..+-|=..+..-++.++.+++|++. |.+++..+..++-+..-.| -+|+.-..+.. .....--+...
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 469999999999999988889999999999998 4666777776663332223 13444332221 11111225667
Q ss_pred HHhHhCCCcEEEEccc
Q 012283 196 GVMKNRYYDMVLSTKL 211 (467)
Q Consensus 196 ~~Lr~~~yDlvI~l~~ 211 (467)
+.|+.+.+|++|.+..
T Consensus 496 e~fre~G~dVlillDS 511 (672)
T PRK12678 496 KRLVELGKDVVVLLDS 511 (672)
T ss_pred HHHHHcCCCEEEEEeC
Confidence 7899999999999884
No 139
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=35.06 E-value=72 Score=29.30 Aligned_cols=43 Identities=33% Similarity=0.468 Sum_probs=35.0
Q ss_pred EEEEEecCCchhHHh-HHHHHHHHHHHCCCcEEEEEEcCCchhhhh
Q 012283 124 RCCCIISGGVYENLL-FFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (467)
Q Consensus 124 rILII~~~~IGD~Il-~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~ 168 (467)
||++-..|+ |+.+. +..+++.|++++ +++|+++.++.+..+++
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~-g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRY-GDEIDVFLSKAGEQVVK 44 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhc-CCEEEEEECHhHHHHHH
Confidence 567777777 88776 888999999776 88999999998886655
No 140
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=34.07 E-value=2.1e+02 Score=29.93 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhhCC-CEEEecCcccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCC-chHHHHHHhcCCCEEE
Q 012283 338 IQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATN-TAAIQLANAREKPSIA 415 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~-~Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~D-TG~~HLAaAlg~PtVa 415 (467)
.+-+..+++.+.+-+ .|++..+..+. . ....-.+.. ........+++.+||+||++= .|.+--|-..|+|+|+
T Consensus 251 ~~l~~~~~~a~~~l~~~vi~~~~~~~~-~---~~~~p~n~~-v~~~~p~~~~l~~ad~vI~hGG~gtt~eaL~~gvP~vv 325 (406)
T COG1819 251 VELLAIVLEALADLDVRVIVSLGGARD-T---LVNVPDNVI-VADYVPQLELLPRADAVIHHGGAGTTSEALYAGVPLVV 325 (406)
T ss_pred HHHHHHHHHHHhcCCcEEEEecccccc-c---cccCCCceE-EecCCCHHHHhhhcCEEEecCCcchHHHHHHcCCCEEE
Confidence 778888888887776 34444433221 1 111111222 223333455999999999985 4566667789999999
Q ss_pred EeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 416 LFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 416 LFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
+=...+ ...|+=.-.+.+| +..--....+.+.+.++|+++|..
T Consensus 326 ~P~~~D-Q~~nA~rve~~G~----G~~l~~~~l~~~~l~~av~~vL~~ 368 (406)
T COG1819 326 IPDGAD-QPLNAERVEELGA----GIALPFEELTEERLRAAVNEVLAD 368 (406)
T ss_pred ecCCcc-hhHHHHHHHHcCC----ceecCcccCCHHHHHHHHHHHhcC
Confidence 866642 2122110000011 111122356777777777777753
No 141
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=34.01 E-value=1.6e+02 Score=31.42 Aligned_cols=75 Identities=11% Similarity=0.263 Sum_probs=46.7
Q ss_pred HHHHHhhhCC-CEEEe----cCcccHHHHHHHHhcCCCCcc--cCCHHHHHHHHHh--cCEEEeCCchHHHHHHhcCCCE
Q 012283 343 EIANGLREFR-PLFVI----PHEKEREGVEDVVGDDASIVF--ITTPGQLAALIND--SAGVIATNTAAIQLANAREKPS 413 (467)
Q Consensus 343 ~Li~~L~~~~-~Vvl~----g~~~e~~~~~~i~~~~~~~~~--~~sL~el~alI~~--a~lvIg~DTG~~HLAaAlg~Pt 413 (467)
.+++.|.+-| .|+.+ .++.+.+.++.+.. +...+ ..+..|+..+++. .|++||+ +.--|+|.-+|+|.
T Consensus 338 ~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~--~~~~v~~d~~~~e~~~~i~~~~pDliig~-s~~~~~a~k~giP~ 414 (475)
T PRK14478 338 SVVKALQELGMEVVGTSVKKSTDEDKERIKELMG--PDAHMIDDANPRELYKMLKEAKADIMLSG-GRSQFIALKAGMPW 414 (475)
T ss_pred HHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcC--CCcEEEeCCCHHHHHHHHhhcCCCEEEec-CchhhhhhhcCCCE
Confidence 5666666667 23222 22333333333332 22222 4567888887765 8999997 66679999999999
Q ss_pred EEEeCCC
Q 012283 414 IALFSSE 420 (467)
Q Consensus 414 VaLFg~t 420 (467)
+-..+..
T Consensus 415 ~~~~~~~ 421 (475)
T PRK14478 415 LDINQER 421 (475)
T ss_pred EEccccc
Confidence 9766543
No 142
>PLN02591 tryptophan synthase
Probab=33.82 E-value=4.5e+02 Score=25.54 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=12.8
Q ss_pred cCCHHHHHHHHHh-cCEEEeC
Q 012283 379 ITTPGQLAALIND-SAGVIAT 398 (467)
Q Consensus 379 ~~sL~el~alI~~-a~lvIg~ 398 (467)
..+..+...+++. ||.+|-.
T Consensus 198 I~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 198 ISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred CCCHHHHHHHHhcCCCEEEEC
Confidence 4456677777777 7776654
No 143
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=33.25 E-value=3.3e+02 Score=28.86 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=45.7
Q ss_pred HHHHHhhhCC-CEEEecCc-ccHHHHHHHHhcCC-CCcc--cCCHHHHHHHHHh--cCEEEeCCchHHHHHHhcCCCEEE
Q 012283 343 EIANGLREFR-PLFVIPHE-KEREGVEDVVGDDA-SIVF--ITTPGQLAALIND--SAGVIATNTAAIQLANAREKPSIA 415 (467)
Q Consensus 343 ~Li~~L~~~~-~Vvl~g~~-~e~~~~~~i~~~~~-~~~~--~~sL~el~alI~~--a~lvIg~DTG~~HLAaAlg~PtVa 415 (467)
.+++.|.+-| .|+..+.. ...+..+.+....+ +..+ ..++.++..+++. .|++||+ +-..++|.-+|+|.+-
T Consensus 340 ~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~~~d~~e~~~~i~~~~pDl~ig~-~~~~~~a~k~giP~i~ 418 (456)
T TIGR01283 340 SLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLDDANPRELLKLLLEYKADLLIAG-GKERYTALKLGIPFCD 418 (456)
T ss_pred HHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEeCCCHHHHHHHHhhcCCCEEEEc-cchHHHHHhcCCCEEE
Confidence 5556666667 34433321 11222233333333 2222 4588888888877 7899997 4448999999999987
Q ss_pred EeC
Q 012283 416 LFS 418 (467)
Q Consensus 416 LFg 418 (467)
+.+
T Consensus 419 ~~~ 421 (456)
T TIGR01283 419 INH 421 (456)
T ss_pred ccc
Confidence 754
No 144
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=33.19 E-value=1.1e+02 Score=36.26 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=53.0
Q ss_pred ccCCccEEEEEecCC--chhHH----hHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHH
Q 012283 118 IRGDVRRCCCIISGG--VYENL----LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEY 191 (467)
Q Consensus 118 ~r~~~~rILII~~~~--IGD~I----l~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~ 191 (467)
.+.+++||||+-.|. ||... -.+.++++||+. |.++.++.... ..+.......|+++..+.. .
T Consensus 3 ~~~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~--G~~vi~v~~~p-~~~~~~~~~aD~~y~~p~~--------~ 71 (1066)
T PRK05294 3 KRTDIKKILIIGSGPIVIGQACEFDYSGTQACKALREE--GYRVVLVNSNP-ATIMTDPEMADATYIEPIT--------P 71 (1066)
T ss_pred CCCCCCEEEEECCchhhhcccccccchHHHHHHHHHHc--CCEEEEEcCCc-ccccCCcccCCEEEECCCC--------H
Confidence 467899999999886 57331 456789999987 88877665433 2222223346666554421 1
Q ss_pred HHHHHHhHhCCCcEEEEcc
Q 012283 192 TDILGVMKNRYYDMVLSTK 210 (467)
Q Consensus 192 ~~l~~~Lr~~~yDlvI~l~ 210 (467)
-.+.+.++++++|.++...
T Consensus 72 e~l~~ii~~e~~D~Iip~~ 90 (1066)
T PRK05294 72 EFVEKIIEKERPDAILPTM 90 (1066)
T ss_pred HHHHHHHHHHCcCEEEECC
Confidence 2344557788999999865
No 145
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.17 E-value=4.9e+02 Score=27.29 Aligned_cols=40 Identities=10% Similarity=-0.066 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHh--cCEEEeCCchHHHHHHhcCCCEEEEeCC
Q 012283 379 ITTPGQLAALIND--SAGVIATNTAAIQLANAREKPSIALFSS 419 (467)
Q Consensus 379 ~~sL~el~alI~~--a~lvIg~DTG~~HLAaAlg~PtVaLFg~ 419 (467)
..++.|+..+|++ .|++||+-- -.|+|.-+|+|.+-+...
T Consensus 355 ~~d~~e~~~~i~~~~pDliig~~~-~~~~a~k~giP~~~~~~~ 396 (421)
T cd01976 355 DVTHYELEEFVKRLKPDLIGSGIK-EKYVFQKMGIPFRQMHSW 396 (421)
T ss_pred CCCHHHHHHHHHHhCCCEEEecCc-chhhhhhcCCCeEeCCcc
Confidence 4578888888765 899999876 789999999999877543
No 146
>PRK09375 quinolinate synthetase; Provisional
Probab=32.99 E-value=1.9e+02 Score=29.29 Aligned_cols=88 Identities=15% Similarity=0.259 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCC----------CCCccccCCCC
Q 012283 363 REGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSEL----------KGRLFVPNAEE 432 (467)
Q Consensus 363 ~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~----------p~~~~~P~~~~ 432 (467)
.+.++++++.+|+..+..=+.-..++.+.||+ ||.=|+.+.++.+..... .|||+.. |.+.+.|+...
T Consensus 195 ~e~i~~~r~~~Pda~Vv~HPEc~~eV~a~AD~-vgSTs~~i~~v~~~~~~~-~iigTE~~L~~~l~~~~P~K~fi~~~~~ 272 (319)
T PRK09375 195 AEDLERLRAEYPDAKVLVHPECPPEVVALADF-VGSTSQIIKAAKASPAKK-FIVGTEIGIVHRLQKANPDKEFIPARSC 272 (319)
T ss_pred HHHHHHHHHHCcCCeEEEecCCCHHHHHhcCE-EecHHHHHHHHHhCCCCe-EEEEccHHHHHHHHHHCCCCEEEECCCC
Confidence 45666777788875431111222344555664 444466666666664333 4555541 22222232100
Q ss_pred CceEeecCCCCCCCCCCHHHHHHHHHH
Q 012283 433 KKCTVISSRTGKLIDTPVEAVLNAMQI 459 (467)
Q Consensus 433 ~~c~i~~~~~~cm~~Is~e~V~~ai~~ 459 (467)
..| ..|+.|+++.|.++++.
T Consensus 273 ~~C-------~~Mk~~tle~l~~~L~~ 292 (319)
T PRK09375 273 AHC-------PTMKMITLEKLLEALEE 292 (319)
T ss_pred CcC-------cChhhcCHHHHHHHHhc
Confidence 122 24788899999888764
No 147
>PLN02735 carbamoyl-phosphate synthase
Probab=32.77 E-value=1.2e+02 Score=36.20 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=54.0
Q ss_pred ccCCccEEEEEecCC--chhH----HhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHH
Q 012283 118 IRGDVRRCCCIISGG--VYEN----LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEY 191 (467)
Q Consensus 118 ~r~~~~rILII~~~~--IGD~----Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~ 191 (467)
.|.+++||||+-.|. ||-. ...+.++++||+. |.++.++-... ..+.......|+++..+.. . +
T Consensus 19 ~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~--G~~Vi~vd~np-~t~~~~~~~aD~~yi~p~~-----~-e- 88 (1102)
T PLN02735 19 KRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEE--GYEVVLINSNP-ATIMTDPETADRTYIAPMT-----P-E- 88 (1102)
T ss_pred cccCCCEEEEECCCccccccceeecchHHHHHHHHHHc--CCEEEEEeCCc-ccccCChhhCcEEEeCCCC-----H-H-
Confidence 477899999999886 5633 4578899999998 78876664332 2222223346776543321 1 1
Q ss_pred HHHHHHhHhCCCcEEEEccc
Q 012283 192 TDILGVMKNRYYDMVLSTKL 211 (467)
Q Consensus 192 ~~l~~~Lr~~~yDlvI~l~~ 211 (467)
.+...++++++|.|+....
T Consensus 89 -~v~~ii~~e~~D~Iip~~g 107 (1102)
T PLN02735 89 -LVEQVIAKERPDALLPTMG 107 (1102)
T ss_pred -HHHHHHHHhCCCEEEECCC
Confidence 2344567889999998653
No 148
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.68 E-value=2.4e+02 Score=31.02 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCC---CCcccCCHHHHHHHHHhcCEEEeC---Cc-h-HHHHHH
Q 012283 339 QVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SIVFITTPGQLAALINDSAGVIAT---NT-A-AIQLAN 407 (467)
Q Consensus 339 e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~---~~~~~~sL~el~alI~~a~lvIg~---DT-G-~~HLAa 407 (467)
..+.+.+..+.++. .++++|...+++.+++.....+ ++.+.-...++..+++.||++|.+ +. | .+==|.
T Consensus 414 ~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAM 493 (578)
T PRK15490 414 FAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQ 493 (578)
T ss_pred HHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHH
Confidence 34444444443332 3555665556666665554332 233333457889999999999964 32 2 333477
Q ss_pred hcCCCEEEEeC
Q 012283 408 AREKPSIALFS 418 (467)
Q Consensus 408 Alg~PtVaLFg 418 (467)
|.|+|+|+--.
T Consensus 494 A~GlPVVATdv 504 (578)
T PRK15490 494 MVGVPVISTPA 504 (578)
T ss_pred HhCCCEEEeCC
Confidence 99999997643
No 149
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=32.34 E-value=1.7e+02 Score=29.32 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=44.2
Q ss_pred HHHcCCCCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEEEecCcccHHHHHHHHhcCCCCcccC
Q 012283 302 YKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFIT 380 (467)
Q Consensus 302 l~~~~l~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~Vvl~g~~~e~~~~~~i~~~~~~~~~~~ 380 (467)
+...|+....+|+||||+.. + .| .--.+++++-++.|.+.. ..+++-..+- ..
T Consensus 139 ~~~lG~~~~~~vViHpG~~~---~------~k-e~al~r~~~~l~~l~~~~~~~L~LEN~~~----------------~~ 192 (303)
T PRK02308 139 LDLMGIDDSSKINIHVGGAY---G------DK-EKALERFIENIKKLPESIKKRLTLENDDK----------------TY 192 (303)
T ss_pred HHHCCCCCCCEEEECCCccC---C------CH-HHHHHHHHHHHHHhhHHhCCEEEEeeCCC----------------CC
Confidence 34456533349999997642 1 11 134667777777765542 2222211110 14
Q ss_pred CHHHHHHHHHhcCEEEeCCc
Q 012283 381 TPGQLAALINDSAGVIATNT 400 (467)
Q Consensus 381 sL~el~alI~~a~lvIg~DT 400 (467)
++.|+..++...++-|+-|+
T Consensus 193 t~~ell~I~e~~~ipv~~D~ 212 (303)
T PRK02308 193 TVEELLYICEKLGIPVVFDY 212 (303)
T ss_pred CHHHHHHHHHHcCCCEEEeH
Confidence 88999999999988899993
No 150
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=30.85 E-value=69 Score=26.95 Aligned_cols=80 Identities=10% Similarity=0.037 Sum_probs=48.4
Q ss_pred CccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhHh
Q 012283 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKN 200 (467)
Q Consensus 121 ~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~ 200 (467)
+.+||||+..|-+ +.-+++++|+. +.+..++-+.. ..........|+++..+....-.+....-+++...++
T Consensus 1 ~ikkvLIanrGei-----a~r~~ra~r~~--Gi~tv~v~s~~-d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~ 72 (110)
T PF00289_consen 1 MIKKVLIANRGEI-----AVRIIRALREL--GIETVAVNSNP-DTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARK 72 (110)
T ss_dssp SSSEEEESS-HHH-----HHHHHHHHHHT--TSEEEEEEEGG-GTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHH
T ss_pred CCCEEEEECCCHH-----HHHHHHHHHHh--CCcceeccCch-hcccccccccccceecCcchhhhhhccHHHHhhHhhh
Confidence 3689999888777 78889999988 77765554432 1122233345777776632211233344566677777
Q ss_pred CCCcEEEE
Q 012283 201 RYYDMVLS 208 (467)
Q Consensus 201 ~~yDlvI~ 208 (467)
+..|.+.=
T Consensus 73 ~g~~~i~p 80 (110)
T PF00289_consen 73 EGADAIHP 80 (110)
T ss_dssp TTESEEES
T ss_pred hcCccccc
Confidence 77777654
No 151
>PTZ00378 hypothetical protein; Provisional
Probab=30.84 E-value=99 Score=33.33 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHhcC----EEE--------eCCchHHHHHHhcCCCEEEEeCCC
Q 012283 379 ITTPGQLAALINDSA----GVI--------ATNTAAIQLANAREKPSIALFSSE 420 (467)
Q Consensus 379 ~~sL~el~alI~~a~----lvI--------g~DTG~~HLAaAlg~PtVaLFg~t 420 (467)
.-||.|++..++.|. ..| |.||-.+|||.|+|...|-.=++.
T Consensus 407 IGTlSEtieav~lA~~~g~~~v~v~vShRSGeD~~IAdLAVa~ga~~IKtGa~~ 460 (518)
T PTZ00378 407 IGTLSDVVEIVRAVGEDEGRAVTVLVQTLAGNAATAAHLAVAMGARFLCSGGLF 460 (518)
T ss_pred ceeHHHHHHHHHHHHHcCCcEEccccCCCcCCccHHHHHHHHcCCCccccCCCc
Confidence 467777666655443 233 789999999999999987654444
No 152
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=30.69 E-value=2.8e+02 Score=29.63 Aligned_cols=69 Identities=6% Similarity=-0.047 Sum_probs=42.8
Q ss_pred HhhhCC-CEEEecCc--ccHHHHHHHHhcCCCCcc--cCCHHHHHHHHHh--cCEEEeCCchHHHHHHhcCCCEEEE
Q 012283 347 GLREFR-PLFVIPHE--KEREGVEDVVGDDASIVF--ITTPGQLAALIND--SAGVIATNTAAIQLANAREKPSIAL 416 (467)
Q Consensus 347 ~L~~~~-~Vvl~g~~--~e~~~~~~i~~~~~~~~~--~~sL~el~alI~~--a~lvIg~DTG~~HLAaAlg~PtVaL 416 (467)
.|.+-| .++..+.. .+.++.+.+......... ..++.|+..+|.. .|++||+--| .|+|.-+|+|.+-+
T Consensus 353 ~l~ELGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~~~d~~el~~~i~~~~pDl~ig~~~~-~~~a~k~gIP~~~~ 428 (466)
T TIGR01282 353 AFEDLGMEVIGTGYEFAHNDDYERTTKYMKDGTLIYDDVTHYEFEEFVEKLKPDLVGSGIKE-KYVFQKMGVPFRQM 428 (466)
T ss_pred HHHHCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHHHhCCCEEEecCCc-cceeeecCCCcccc
Confidence 355567 35555542 223333323222222221 4677888877664 8999999887 99999999998543
No 153
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=30.54 E-value=3.6e+02 Score=23.73 Aligned_cols=103 Identities=22% Similarity=0.274 Sum_probs=58.0
Q ss_pred HHHHhhhCC-CEEEecCcccH----HHHHHHHhcCCCCcc------cCCHHHHHHHHHhcCEEEe------------CCc
Q 012283 344 IANGLREFR-PLFVIPHEKER----EGVEDVVGDDASIVF------ITTPGQLAALINDSAGVIA------------TNT 400 (467)
Q Consensus 344 Li~~L~~~~-~Vvl~g~~~e~----~~~~~i~~~~~~~~~------~~sL~el~alI~~a~lvIg------------~DT 400 (467)
+.+...+.+ +|.+.+.-.+. +...+|...-++... +.+--.+--+|..||++|- -|-
T Consensus 17 I~~ga~~~~L~v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvVvrFGekYKQWNaAfDA 96 (144)
T TIGR03646 17 IKEGAKSKNLPIVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVIALFGEKYKQWNAAFDA 96 (144)
T ss_pred HHHHHHHcCCCeEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEEEEechHHHHHHHHhhH
Confidence 333344445 56555443333 333455554443221 2333456789999999985 455
Q ss_pred hHHHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHH
Q 012283 401 AAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIF 460 (467)
Q Consensus 401 G~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~l 460 (467)
| .|+|+|+|.|.|-++.. -+|. -+-.- ....-.=+|++|++.+.-.
T Consensus 97 g---~aaAlgKplI~lh~~~~----~HpL-KEvda------aA~avaetp~Qvv~iL~Yv 142 (144)
T TIGR03646 97 G---YAAALGKPLIILRPEEL----IHPL-KEVDN------KAQAVVETPEQAIETLKYI 142 (144)
T ss_pred H---HHHHcCCCeEEecchhc----cccH-HHHhH------HHHHHhcCHHHHHHHHHHh
Confidence 5 68999999999988763 2465 21100 0001122788888877643
No 154
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=30.43 E-value=1.4e+02 Score=31.87 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=23.8
Q ss_pred cCCHHHHHHHHHhcCEEEeC-----CchHHHHHHhcCCCEEEEeCCCC
Q 012283 379 ITTPGQLAALINDSAGVIAT-----NTAAIQLANAREKPSIALFSSEL 421 (467)
Q Consensus 379 ~~sL~el~alI~~a~lvIg~-----DTG~~HLAaAlg~PtVaLFg~t~ 421 (467)
..+-.|.....+.+|+++-+ -|-.++ |-..|+|+|++=|.+-
T Consensus 349 ~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~d-ALwmGVPvVTl~G~~~ 395 (468)
T PF13844_consen 349 VAPREEHLRRYQLADICLDTFPYNGGTTTLD-ALWMGVPVVTLPGETM 395 (468)
T ss_dssp ---HHHHHHHGGG-SEEE--SSS--SHHHHH-HHHHT--EEB---SSG
T ss_pred CCCHHHHHHHhhhCCEEeeCCCCCCcHHHHH-HHHcCCCEEeccCCCc
Confidence 34567888899999999843 233455 6789999999999873
No 155
>PRK14099 glycogen synthase; Provisional
Probab=30.39 E-value=6.8e+02 Score=26.69 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhhCC-CEEEec-Ccc-cHHHHHHHHhcCCC-Cc-ccCCHHHHHHHHH-hcCEEEeCCc----hHH-HHH
Q 012283 338 IQVWAEIANGLREFR-PLFVIP-HEK-EREGVEDVVGDDAS-IV-FITTPGQLAALIN-DSAGVIATNT----AAI-QLA 406 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~-~Vvl~g-~~~-e~~~~~~i~~~~~~-~~-~~~sL~el~alI~-~a~lvIg~DT----G~~-HLA 406 (467)
.+...+.+..+.+.. .++++| |+. .++..+++....+. +. +..--.+++.++. .||++|.+-- |.. -.|
T Consensus 310 ~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fGl~~lEA 389 (485)
T PRK14099 310 LDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADALLVPSRFEPCGLTQLCA 389 (485)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCcHHHHHH
Confidence 455666666665554 344444 432 24455555554442 21 1112367888885 6999997632 444 467
Q ss_pred HhcCCCEEE
Q 012283 407 NAREKPSIA 415 (467)
Q Consensus 407 aAlg~PtVa 415 (467)
.+.|+|.|+
T Consensus 390 ma~G~ppVv 398 (485)
T PRK14099 390 LRYGAVPVV 398 (485)
T ss_pred HHCCCCcEE
Confidence 899987666
No 156
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=30.00 E-value=1.8e+02 Score=29.48 Aligned_cols=44 Identities=16% Similarity=0.059 Sum_probs=31.3
Q ss_pred CCCCcc--cCCHHHHHHHHHhcCEEEeC--Cc--------hHHHHHHhcCCCEEEE
Q 012283 373 DASIVF--ITTPGQLAALINDSAGVIAT--NT--------AAIQLANAREKPSIAL 416 (467)
Q Consensus 373 ~~~~~~--~~sL~el~alI~~a~lvIg~--DT--------G~~HLAaAlg~PtVaL 416 (467)
.+++.. ..+-.++.+.++.||+.|-+ ++ .-+-=|.|.|+|+|+-
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat 308 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVAT 308 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEec
Confidence 345443 44668999999999999864 11 1245688999999963
No 157
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=29.57 E-value=1.2e+02 Score=31.11 Aligned_cols=89 Identities=17% Similarity=0.098 Sum_probs=61.9
Q ss_pred CccEEEEEecC--CchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecC---CC-C-------CCC
Q 012283 121 DVRRCCCIISG--GVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDL---DD-D-------WPE 187 (467)
Q Consensus 121 ~~~rILII~~~--~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~---~~-~-------~~~ 187 (467)
+.+||++...+ |||-..-++-+.++|-+.|++-+|.+++...-..=|..-..||.| .++. .+ . -..
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V-~LPsl~k~~~G~~~~~d~~~~ 86 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFV-KLPSLIKGDNGEYGLVDLDGD 86 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceE-ecCceEecCCCceeeeecCCC
Confidence 35699999865 999999999999999999999999999998766666666667754 3331 11 0 011
Q ss_pred hHHHHH-----HHHHhHhCCCcEEEEcc
Q 012283 188 PAEYTD-----ILGVMKNRYYDMVLSTK 210 (467)
Q Consensus 188 ~~~~~~-----l~~~Lr~~~yDlvI~l~ 210 (467)
..+..+ ++...+..+.|++|.-.
T Consensus 87 l~e~~~~Rs~lil~t~~~fkPDi~IVd~ 114 (400)
T COG4671 87 LEETKKLRSQLILSTAETFKPDIFIVDK 114 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 222222 34456778899976533
No 158
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=29.47 E-value=74 Score=27.37 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=27.6
Q ss_pred HHHHHHhcCEEEeCCchHHHHHHhcCCCEEEEeCCCC
Q 012283 385 LAALINDSAGVIATNTAAIQLANAREKPSIALFSSEL 421 (467)
Q Consensus 385 l~alI~~a~lvIg~DTG~~HLAaAlg~PtVaLFg~t~ 421 (467)
+-.+++.++++|++|.|.-|+...+|..--.+-|.-+
T Consensus 9 ~~~l~~~~~~~i~aDgGa~~l~~~~g~~Pd~iiGDfD 45 (123)
T PF04263_consen 9 FKNLWKNADFIIAADGGANRLYELFGIKPDLIIGDFD 45 (123)
T ss_dssp HHHHHHTTSEEEEETTHHHHHHHTTTT--SEEEC-SS
T ss_pred HHhhhhcCCEEEEEchHHHHHHHhcCCCCCEEEecCC
Confidence 3457899999999999999998875766666667543
No 159
>PRK09932 glycerate kinase II; Provisional
Probab=29.33 E-value=72 Score=33.13 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHhcCEEEeCCc-------------hHHHHHHhcCCCEEEEeCCC
Q 012283 379 ITTPGQLAALINDSAGVIATNT-------------AAIQLANAREKPSIALFSSE 420 (467)
Q Consensus 379 ~~sL~el~alI~~a~lvIg~DT-------------G~~HLAaAlg~PtVaLFg~t 420 (467)
...+..+-..|+.||+||+..- |..++|...++|+|+|-|.-
T Consensus 272 v~~~~~l~~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~ 326 (381)
T PRK09932 272 VLNAVNLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVL 326 (381)
T ss_pred HHHhcChHHHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEeccc
Confidence 3455677788999999999764 78899999999999999975
No 160
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=28.71 E-value=1.6e+02 Score=30.86 Aligned_cols=88 Identities=11% Similarity=0.025 Sum_probs=57.0
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEE-EEcCCch---hhhhcCCCCCEEEEecCCCC----CCChHHHHH
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDV-IASARGK---QTFELNKNVRWANVYDLDDD----WPEPAEYTD 193 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~l-l~~~~~~---~l~~~~p~Id~ii~~~~~~~----~~~~~~~~~ 193 (467)
-.|.||+-..|.|=..+.--+...+...+++..+.+ ++..... ++.+..-. .|+.-..+.. ++.....+.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg--~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKG--EVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcC--cEEEECCCCCHHHHHHHHHHHHH
Confidence 469999999999999999999999998888988554 4444433 34444332 3443332221 111122345
Q ss_pred HHHHhHhCCCcEEEEccc
Q 012283 194 ILGVMKNRYYDMVLSTKL 211 (467)
Q Consensus 194 l~~~Lr~~~yDlvI~l~~ 211 (467)
..+.++.+..|++|.+..
T Consensus 247 ~Ae~~~e~G~dVlL~iDs 264 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDS 264 (416)
T ss_pred HHHHHHHcCCCEEEEEEC
Confidence 566677788999988873
No 161
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=28.28 E-value=83 Score=28.90 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=35.1
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhh
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~ 168 (467)
+||++..+|++|=. .+.-+++.|++. +++++++.++....++.
T Consensus 1 k~I~lgvtGs~~a~-~~~~ll~~L~~~--g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 1 KKILLAVTGSIAAY-KAADLTSQLTKL--GYDVTVLMTQAATQFIT 43 (177)
T ss_pred CEEEEEEcCHHHHH-HHHHHHHHHHHC--CCEEEEEEChHHHhhcc
Confidence 58999999999866 555889999886 78999999988776554
No 162
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=28.27 E-value=3.8e+02 Score=27.65 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhCC---C--EEEecCcccHHHHHHHHhcC-CC--Ccc--cCCHHHHHHHHHh--cCEEEeCCc-----
Q 012283 338 IQVWAEIANGLREFR---P--LFVIPHEKEREGVEDVVGDD-AS--IVF--ITTPGQLAALIND--SAGVIATNT----- 400 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~--Vvl~g~~~e~~~~~~i~~~~-~~--~~~--~~sL~el~alI~~--a~lvIg~DT----- 400 (467)
.+...+.+..+.+.+ . ++++|+..+.+..++..+.. .+ +.+ ..+=.|+.++++. |+++|-+..
T Consensus 245 ~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p 324 (407)
T cd04946 245 VDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLP 324 (407)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCcccccc
Confidence 456666666666553 1 23445544555555554322 12 222 3455788899876 677775543
Q ss_pred hHHHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 401 AAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 401 G~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
..+-=|.|.|+|+|+--.+..+ ... -- +..++.+ . ..-+++++.+++.+++..
T Consensus 325 ~~llEAma~G~PVIas~vgg~~-e~i-~~-~~~G~l~-~------~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 325 VSIMEAMSFGIPVIATNVGGTP-EIV-DN-GGNGLLL-S------KDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHHHHHHHcCCCEEeCCCCCcH-HHh-cC-CCcEEEe-C------CCCCHHHHHHHHHHHHhC
Confidence 2244488999999983211111 011 00 1112211 1 123688999999888753
No 163
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=28.04 E-value=2.3e+02 Score=25.50 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHhhhCC--CEEEecCccc
Q 012283 335 LLPIQVWAEIANGLREFR--PLFVIPHEKE 362 (467)
Q Consensus 335 rWP~e~~~~Li~~L~~~~--~Vvl~g~~~e 362 (467)
.|+-|.|+..++.+...| ..+++||+.-
T Consensus 79 ~~sSe~fA~~l~~~~~~G~~i~f~IGG~~G 108 (155)
T COG1576 79 ALSSEEFADFLERLRDDGRDISFLIGGADG 108 (155)
T ss_pred cCChHHHHHHHHHHHhcCCeEEEEEeCccc
Confidence 599999999999999887 4566676653
No 164
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=27.93 E-value=1.7e+02 Score=29.94 Aligned_cols=95 Identities=11% Similarity=0.102 Sum_probs=51.8
Q ss_pred EEEecCcccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCC---chH---HHHHHhcCCCEEEEeCCCCCCCccc
Q 012283 354 LFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATN---TAA---IQLANAREKPSIALFSSELKGRLFV 427 (467)
Q Consensus 354 Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~D---TG~---~HLAaAlg~PtVaLFg~t~p~~~~~ 427 (467)
++++|...+. .++++.. .+++.+...+.++..+++.||++|.+- .|. +-=|.|.|+|+|+-=... ..-
T Consensus 262 l~ivG~g~~~-~~~~l~~-~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~---~~i- 335 (397)
T TIGR03087 262 FYIVGAKPSP-AVRALAA-LPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAA---EGI- 335 (397)
T ss_pred EEEECCCChH-HHHHhcc-CCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCccc---ccc-
Confidence 4455543332 3333322 234433333457889999999999652 343 666889999999932110 000
Q ss_pred cCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHh
Q 012283 428 PNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 463 (467)
Q Consensus 428 P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~ 463 (467)
.. . .. .+.+-.-+++++.+++.+++..
T Consensus 336 ~~-~-~~-------~g~lv~~~~~~la~ai~~ll~~ 362 (397)
T TIGR03087 336 DA-L-PG-------AELLVAADPADFAAAILALLAN 362 (397)
T ss_pred cc-c-CC-------cceEeCCCHHHHHHHHHHHHcC
Confidence 00 0 01 1111124688888888887754
No 165
>PRK10342 glycerate kinase I; Provisional
Probab=27.80 E-value=69 Score=33.25 Aligned_cols=42 Identities=29% Similarity=0.303 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHhcCEEEeCCc-------------hHHHHHHhcCCCEEEEeCCC
Q 012283 379 ITTPGQLAALINDSAGVIATNT-------------AAIQLANAREKPSIALFSSE 420 (467)
Q Consensus 379 ~~sL~el~alI~~a~lvIg~DT-------------G~~HLAaAlg~PtVaLFg~t 420 (467)
...+..+-..|+.||+||+..- |...+|...++|+|+|-|.-
T Consensus 272 v~~~~~l~~~l~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~~ 326 (381)
T PRK10342 272 VTTALNLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSL 326 (381)
T ss_pred HHHhcCHHHHhccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEeccc
Confidence 4556678888999999999875 78888999999999999975
No 166
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=27.80 E-value=1.5e+02 Score=31.07 Aligned_cols=81 Identities=10% Similarity=-0.017 Sum_probs=47.4
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhHhC
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~~ 201 (467)
.+||||+-.+-+ ..++++++|+. +.++..+....... .......|+.+.+.....-....+.-.++...++.
T Consensus 2 ~k~iLi~g~g~~-----a~~i~~aa~~~--G~~vv~~~~~~d~~-a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~ 73 (451)
T PRK08591 2 FDKILIANRGEI-----ALRIIRACKEL--GIKTVAVHSTADRD-ALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEIT 73 (451)
T ss_pred cceEEEECCCHH-----HHHHHHHHHHc--CCeEEEEcChhhcc-CCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHh
Confidence 478999866555 47888899987 78877775543221 11112456666553211101122333456666778
Q ss_pred CCcEEEEcc
Q 012283 202 YYDMVLSTK 210 (467)
Q Consensus 202 ~yDlvI~l~ 210 (467)
+.|.++-..
T Consensus 74 ~id~I~p~~ 82 (451)
T PRK08591 74 GADAIHPGY 82 (451)
T ss_pred CCCEEEECC
Confidence 899998654
No 167
>PLN02939 transferase, transferring glycosyl groups
Probab=27.44 E-value=9e+02 Score=28.53 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=34.4
Q ss_pred cccccccCCccEEEEE--------ecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCC
Q 012283 113 SLPLKIRGDVRRCCCI--------ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASAR 162 (467)
Q Consensus 113 ~~~~~~r~~~~rILII--------~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~ 162 (467)
++..+-+...||||.| +.|||||++-.+| ++|++. |..|.+++...
T Consensus 472 ~~~~~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLP--kAL~~~--GhdV~VIlP~Y 525 (977)
T PLN02939 472 KLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLG--KALQKK--GHLVEIVLPKY 525 (977)
T ss_pred HhccCCCCCCCEEEEEEcccccccccccHHHHHHHHH--HHHHHc--CCeEEEEeCCC
Confidence 3344445677899876 5799999999988 677765 77888888754
No 168
>PLN02939 transferase, transferring glycosyl groups
Probab=27.43 E-value=72 Score=37.10 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhCC-CEEEec-Cccc--HHHHHHHHhcCC---CCcccCCHH--HHHHHHHhcCEEEeCC-----chHHH
Q 012283 339 QVWAEIANGLREFR-PLFVIP-HEKE--REGVEDVVGDDA---SIVFITTPG--QLAALINDSAGVIATN-----TAAIQ 404 (467)
Q Consensus 339 e~~~~Li~~L~~~~-~Vvl~g-~~~e--~~~~~~i~~~~~---~~~~~~sL~--el~alI~~a~lvIg~D-----TG~~H 404 (467)
+...+.+..+.+.+ .++++| |+.. .+..+.+...++ ++.+..... ....+++.||+||-+- .-..-
T Consensus 795 DlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqL 874 (977)
T PLN02939 795 HLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQM 874 (977)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHH
Confidence 45555555554444 344444 4322 234445555443 122222232 3457999999999753 34556
Q ss_pred HHHhcCCCEEEE
Q 012283 405 LANAREKPSIAL 416 (467)
Q Consensus 405 LAaAlg~PtVaL 416 (467)
.|.+.|+|.|+-
T Consensus 875 EAMAyGtPPVVs 886 (977)
T PLN02939 875 IAMRYGSVPIVR 886 (977)
T ss_pred HHHHCCCCEEEe
Confidence 788999999874
No 169
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=27.36 E-value=1.3e+02 Score=25.85 Aligned_cols=67 Identities=13% Similarity=0.025 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEec---CCCCCCChHHHHHHHHHhHhCCCcEE
Q 012283 136 NLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD---LDDDWPEPAEYTDILGVMKNRYYDMV 206 (467)
Q Consensus 136 ~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~---~~~~~~~~~~~~~l~~~Lr~~~yDlv 206 (467)
-..+.-++++|+++ |.++++++.....+.... .+....... .......+.....+.+.+++.++|+|
T Consensus 15 e~~~~~l~~~l~~~--G~~v~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DiV 84 (177)
T PF13439_consen 15 ERVVLNLARALAKR--GHEVTVVSPGVKDPIEEE--LVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKPDIV 84 (177)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEESS-TTS-SST--EEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHC--CCEEEEEEcCCCccchhh--ccceeeeeecccccccchhHHHHHHHHHHHHHcCCCeE
Confidence 45566678899886 899999998866555554 111111111 11111223344667777888899988
No 170
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=27.36 E-value=79 Score=32.78 Aligned_cols=43 Identities=23% Similarity=0.140 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHhcCEEEeCC-------------chHHHHHHhcCCCEEEEeCCCC
Q 012283 379 ITTPGQLAALINDSAGVIATN-------------TAAIQLANAREKPSIALFSSEL 421 (467)
Q Consensus 379 ~~sL~el~alI~~a~lvIg~D-------------TG~~HLAaAlg~PtVaLFg~t~ 421 (467)
...+..+-..|+.||+||+.. .|..++|...++|+|+|-|...
T Consensus 271 v~~~~~l~~~l~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~ 326 (375)
T TIGR00045 271 VLELLDLEQKIKDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSLG 326 (375)
T ss_pred HHHhhCHHHHhcCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEecccC
Confidence 345567788899999999976 4888999999999999999763
No 171
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=27.24 E-value=3e+02 Score=27.27 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=60.9
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhh---c---CCCCCEEEE-ecCCCC-----CCChHH
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE---L---NKNVRWANV-YDLDDD-----WPEPAE 190 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~---~---~p~Id~ii~-~~~~~~-----~~~~~~ 190 (467)
.|++|+-..|.|=..+..-+++.+++++.+.-|..++.++..++.+ . ....++.+. ....+. +.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~ 149 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALT 149 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 4999999999999999999999999999888888888887665433 2 223343333 332221 111112
Q ss_pred HHHHHHHhHhC-CCcEEEEccc
Q 012283 191 YTDILGVMKNR-YYDMVLSTKL 211 (467)
Q Consensus 191 ~~~l~~~Lr~~-~yDlvI~l~~ 211 (467)
-+.+...+|.+ ..|+++.+..
T Consensus 150 a~~~AEyfr~~~g~~Vl~~~Ds 171 (274)
T cd01133 150 GLTMAEYFRDEEGQDVLLFIDN 171 (274)
T ss_pred HHHHHHHHHHhcCCeEEEEEeC
Confidence 24566778877 8999988883
No 172
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=27.14 E-value=1.4e+02 Score=26.95 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=45.1
Q ss_pred EEEecCcccHHHHHHHHhcCCCCc------c---cCCHHHHHHHHH-----hcCEEEeCCchHHHHH----HhcCCCEEE
Q 012283 354 LFVIPHEKEREGVEDVVGDDASIV------F---ITTPGQLAALIN-----DSAGVIATNTAAIQLA----NAREKPSIA 415 (467)
Q Consensus 354 Vvl~g~~~e~~~~~~i~~~~~~~~------~---~~sL~el~alI~-----~a~lvIg~DTG~~HLA----aAlg~PtVa 415 (467)
.++.|+..|.+..++....+.... + --++.++..+++ ..+++|+.-.+..||+ +....|+|+
T Consensus 2 ~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIg 81 (156)
T TIGR01162 2 GIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIG 81 (156)
T ss_pred EEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEE
Confidence 356677777776666554432211 0 245677777765 4799999999999975 566789998
Q ss_pred EeCCC
Q 012283 416 LFSSE 420 (467)
Q Consensus 416 LFg~t 420 (467)
+=-+.
T Consensus 82 vP~~~ 86 (156)
T TIGR01162 82 VPVPS 86 (156)
T ss_pred ecCCc
Confidence 87654
No 173
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=27.09 E-value=2.6e+02 Score=29.43 Aligned_cols=76 Identities=12% Similarity=0.071 Sum_probs=45.6
Q ss_pred HHHHHhhhCC-CEEEecCcc----cHHHHHHHHhcCC-CCcccCCHH-HHHHHHH-hcCEEEeCCchHHHHHHhcCCCEE
Q 012283 343 EIANGLREFR-PLFVIPHEK----EREGVEDVVGDDA-SIVFITTPG-QLAALIN-DSAGVIATNTAAIQLANAREKPSI 414 (467)
Q Consensus 343 ~Li~~L~~~~-~Vvl~g~~~----e~~~~~~i~~~~~-~~~~~~sL~-el~alI~-~a~lvIg~DTG~~HLAaAlg~PtV 414 (467)
.+++.|.+-| .++.+++.. -.+...+...... .+....++. ++-.+-+ ..|++||+ |+..++|..+|+|.+
T Consensus 299 ~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~~~~~~~~v~~~~dl~~~~~~l~~~~pDllig~-s~~~~~A~k~gIP~v 377 (422)
T TIGR02015 299 LVVRLLLESGADVPYVGTAIPRTAWGAEDKRWLEMLGVEVKYRASLEDDMEAVLEFEPDLAIGT-TPLVQFAKEHGIPAL 377 (422)
T ss_pred HHHHHHHHCCCEEEEEecCCCCccccHHHHHHHHhcCCCceeccCHHHHHHHHhhCCCCEEEcC-CcchHHHHHcCCCEE
Confidence 6777788777 344333221 1111112222222 233345675 4444444 69999999 999999999999999
Q ss_pred EEeCC
Q 012283 415 ALFSS 419 (467)
Q Consensus 415 aLFg~ 419 (467)
-+.=|
T Consensus 378 r~g~p 382 (422)
T TIGR02015 378 YFTNL 382 (422)
T ss_pred Eecch
Confidence 87644
No 174
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=26.23 E-value=3.4e+02 Score=28.37 Aligned_cols=78 Identities=18% Similarity=0.150 Sum_probs=49.4
Q ss_pred HHHHHHhhhCC--CE-EEe--cCcccHHHHHHHHhcC---CCCcccCCHHHHHHHHHh--cCEEEeCCchHHHHHHhcCC
Q 012283 342 AEIANGLREFR--PL-FVI--PHEKEREGVEDVVGDD---ASIVFITTPGQLAALIND--SAGVIATNTAAIQLANAREK 411 (467)
Q Consensus 342 ~~Li~~L~~~~--~V-vl~--g~~~e~~~~~~i~~~~---~~~~~~~sL~el~alI~~--a~lvIg~DTG~~HLAaAlg~ 411 (467)
..+++.|.+.+ ++ ++. ..+.+.+..+...... ..++...++.|+..+++. .|++||+--+ .|+|..+|+
T Consensus 312 ~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~~pdliig~~~~-~~~a~~~~i 390 (428)
T cd01965 312 LGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEEPVDLLIGNSHG-RYLARDLGI 390 (428)
T ss_pred HHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhccCCCEEEECchh-HHHHHhcCC
Confidence 36777777776 22 222 2333333332222211 112336788999999988 9999998877 899999999
Q ss_pred CEEEEeCCC
Q 012283 412 PSIALFSSE 420 (467)
Q Consensus 412 PtVaLFg~t 420 (467)
|.+.+=-|.
T Consensus 391 p~i~~~~P~ 399 (428)
T cd01965 391 PLVRVGFPI 399 (428)
T ss_pred CEEEecCCc
Confidence 998653343
No 175
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=26.12 E-value=4.8e+02 Score=27.70 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=45.8
Q ss_pred HHHHHhh-hCC-CEEEecCc-ccHHHHHHHHhcCCCC-c--ccCCHHHHHHHHH--hcCEEEeCCchHHHHHHhcCCCEE
Q 012283 343 EIANGLR-EFR-PLFVIPHE-KEREGVEDVVGDDASI-V--FITTPGQLAALIN--DSAGVIATNTAAIQLANAREKPSI 414 (467)
Q Consensus 343 ~Li~~L~-~~~-~Vvl~g~~-~e~~~~~~i~~~~~~~-~--~~~sL~el~alI~--~a~lvIg~DTG~~HLAaAlg~PtV 414 (467)
.+++.|. +-| .++..+.. ...+..+++....+.. . ...+..|+...++ +.|++||+--+ .|+|.-+|+|.+
T Consensus 339 ~l~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~e~~~~i~~~~pDllig~~~~-~~~a~k~gip~~ 417 (457)
T TIGR01284 339 HWPRPLEDELGMEVVAVSTKFGHEDDYEKIIARVREGTVIIDDPNELELEEIIEKYKPDIILTGIRE-GELAKKLGVPYI 417 (457)
T ss_pred HHHHHHHHhCCCEEEEEEEEeCCHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHhcCCCEEEecCCc-chhhhhcCCCEE
Confidence 4555565 356 23322221 1233334455444432 2 2456667776664 48999999877 899999999999
Q ss_pred EEeC
Q 012283 415 ALFS 418 (467)
Q Consensus 415 aLFg 418 (467)
-+.+
T Consensus 418 ~~~~ 421 (457)
T TIGR01284 418 NIHS 421 (457)
T ss_pred Eccc
Confidence 8854
No 176
>PHA01630 putative group 1 glycosyl transferase
Probab=25.89 E-value=4.3e+02 Score=26.64 Aligned_cols=78 Identities=8% Similarity=-0.034 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCCc----h-HHHHHHhc
Q 012283 338 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNT----A-AIQLANAR 409 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~DT----G-~~HLAaAl 409 (467)
.+...+.++.|.+++ .++++|+..+... +.. ........+-.++..+++.||++|-+-. | ++==|-|.
T Consensus 157 ~d~Li~A~~~l~~~~~~~~llivG~~~~~~~---l~~-~~~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~ 232 (331)
T PHA01630 157 GDIVVKIFHELQNEGYDFYFLIKSSNMLDPR---LFG-LNGVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALAL 232 (331)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEeCcccchh---hcc-ccceeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHc
Confidence 566666667666543 2444443222211 111 1111113466899999999999996432 2 33347799
Q ss_pred CCCEEEEeCC
Q 012283 410 EKPSIALFSS 419 (467)
Q Consensus 410 g~PtVaLFg~ 419 (467)
|+|+|+--..
T Consensus 233 G~PVIas~~g 242 (331)
T PHA01630 233 GLDVVVTEKG 242 (331)
T ss_pred CCCEEEeCCC
Confidence 9999997543
No 177
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=25.69 E-value=4.8e+02 Score=30.53 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=48.8
Q ss_pred HHHHHhhhCC-CEEEecCc----ccHHHHHHHHhcCCCCcccCCHHHHHHHHHh--cCEEEeCCchHHHHHHhcCCCEEE
Q 012283 343 EIANGLREFR-PLFVIPHE----KEREGVEDVVGDDASIVFITTPGQLAALIND--SAGVIATNTAAIQLANAREKPSIA 415 (467)
Q Consensus 343 ~Li~~L~~~~-~Vvl~g~~----~e~~~~~~i~~~~~~~~~~~sL~el~alI~~--a~lvIg~DTG~~HLAaAlg~PtVa 415 (467)
.+++.|.+-| .|+..+.. +|.+.++++......+....++.++..+|+. .|++||+ +--.++|..+|+|.+-
T Consensus 334 ~la~~l~elGmevv~~g~~~~~~~d~~~~~~~~~~~~~vi~~~d~~el~~~i~~~~pDLlig~-~~~~~~a~k~giP~~~ 412 (917)
T PRK14477 334 SMVNALRELGVEVLAAGTQNSTLEDFARMKALMHKDAHIIEDTSTAGLLRVMREKMPDLIVAG-GKTKFLALKTRTPFLD 412 (917)
T ss_pred HHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHhcCCCEEEec-CchhhHHHHcCCCeEE
Confidence 3666666667 35555543 2233333333221112225678888888765 7899994 3348999999999999
Q ss_pred EeCCC
Q 012283 416 LFSSE 420 (467)
Q Consensus 416 LFg~t 420 (467)
+.+..
T Consensus 413 ~~~~~ 417 (917)
T PRK14477 413 INHGR 417 (917)
T ss_pred ccCCc
Confidence 88744
No 178
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=25.62 E-value=4.1e+02 Score=28.20 Aligned_cols=81 Identities=12% Similarity=0.125 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhCC--C-EEEecCc-c---cHHHHHHHHhcCC---CCcccCCHHHHHHHHHh----cCEEEeCCchHHH
Q 012283 339 QVWAEIANGLREFR--P-LFVIPHE-K---EREGVEDVVGDDA---SIVFITTPGQLAALIND----SAGVIATNTAAIQ 404 (467)
Q Consensus 339 e~~~~Li~~L~~~~--~-Vvl~g~~-~---e~~~~~~i~~~~~---~~~~~~sL~el~alI~~----a~lvIg~DTG~~H 404 (467)
++...+.+.|.+-+ + +++.+.. . +.+..+++.+... .+.+..++.|+..+++. .|++||+--+ -|
T Consensus 315 ~~~~~l~~fl~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e~~~~i~~~~~~~dliig~s~~-~~ 393 (454)
T cd01973 315 DLVIGLAEFCLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIVTNADLWELEKRIKNKGLELDLILGHSKG-RY 393 (454)
T ss_pred HHHHHHHHHHHHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEEECCCHHHHHHHHHhcCCCCCEEEECCcc-HH
Confidence 35667888887666 3 3334442 1 2334444533222 23336789999999865 7999998766 89
Q ss_pred HHHhcCCCEEEEeCCC
Q 012283 405 LANAREKPSIALFSSE 420 (467)
Q Consensus 405 LAaAlg~PtVaLFg~t 420 (467)
+|.-+|+|.+-+--|.
T Consensus 394 ~A~~~gip~~~~g~Pv 409 (454)
T cd01973 394 IAIDNNIPMVRVGFPT 409 (454)
T ss_pred HHHHcCCCEEEecCCe
Confidence 9999999998874444
No 179
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=25.36 E-value=4.9e+02 Score=26.80 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=58.5
Q ss_pred EEEecCc-ccHHHHHHHHhc----CCC--Cc---ccCCHHHHHHHHHhcCEEEeCC-----chHHHHHHhcCCCEEEEeC
Q 012283 354 LFVIPHE-KEREGVEDVVGD----DAS--IV---FITTPGQLAALINDSAGVIATN-----TAAIQLANAREKPSIALFS 418 (467)
Q Consensus 354 Vvl~g~~-~e~~~~~~i~~~----~~~--~~---~~~sL~el~alI~~a~lvIg~D-----TG~~HLAaAlg~PtVaLFg 418 (467)
++-++-+ +..++++++.+. ++. +. ..+++.|..++++.||+.|-+= -|.+=++-.+|+|++. .
T Consensus 218 ivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L--~ 295 (360)
T PF07429_consen 218 IVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFL--S 295 (360)
T ss_pred EEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEE--e
Confidence 4444433 456666666543 332 22 1578899999999999999875 3667777788888764 2
Q ss_pred CCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHH
Q 012283 419 SELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFN 461 (467)
Q Consensus 419 ~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll 461 (467)
..+| .|.=. .+.+..+.- .-++++...|.+|=+++.
T Consensus 296 ~~np--~~~~l-~~~~ipVlf----~~d~L~~~~v~ea~rql~ 331 (360)
T PF07429_consen 296 RDNP--FWQDL-KEQGIPVLF----YGDELDEALVREAQRQLA 331 (360)
T ss_pred cCCh--HHHHH-HhCCCeEEe----ccccCCHHHHHHHHHHHh
Confidence 3333 34322 223332321 234677777777755443
No 180
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=25.31 E-value=4e+02 Score=28.76 Aligned_cols=134 Identities=8% Similarity=-0.047 Sum_probs=74.2
Q ss_pred CcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEEEecCcccHHHHHHHHhcCCCCcccCCHHHHHHH
Q 012283 310 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAAL 388 (467)
Q Consensus 310 ~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL~el~al 388 (467)
++.|.+.-|+... .. ..|.+....+++.+.+.. .|++-.+.+..+ ...-.++....-+.| .++
T Consensus 296 ~g~V~vS~GS~~~---------~~-~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~-----~~~p~Nv~i~~w~Pq-~~l 359 (507)
T PHA03392 296 NGVVYVSFGSSID---------TN-DMDNEFLQMLLRTFKKLPYNVLWKYDGEVEA-----INLPANVLTQKWFPQ-RAV 359 (507)
T ss_pred CcEEEEECCCCCc---------CC-CCCHHHHHHHHHHHHhCCCeEEEEECCCcCc-----ccCCCceEEecCCCH-HHH
Confidence 3578787654321 11 267888889999887765 344333222111 111123332222333 457
Q ss_pred H--HhcCEEEeCC-chHHHHHHhcCCCEEEEeCCCCCCCccccCCCCCceEeecCCCCCCCCCCHHHHHHHHHHHHHhh
Q 012283 389 I--NDSAGVIATN-TAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNESL 464 (467)
Q Consensus 389 I--~~a~lvIg~D-TG~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~~~c~i~~~~~~cm~~Is~e~V~~ai~~ll~~~ 464 (467)
+ .++++||+.- .|.++=|...|+|.|++=--.+ ...++=...+.++-+. -...+++.+++.+|+++++..+
T Consensus 360 L~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~D-Q~~Na~rv~~~G~G~~----l~~~~~t~~~l~~ai~~vl~~~ 433 (507)
T PHA03392 360 LKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGD-QFYNTNKYVELGIGRA----LDTVTVSAAQLVLAIVDVIENP 433 (507)
T ss_pred hcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCcc-HHHHHHHHHHcCcEEE----eccCCcCHHHHHHHHHHHhCCH
Confidence 7 5699999975 4788999999999998632221 1011000001122111 1125689999999999988654
No 181
>PLN02501 digalactosyldiacylglycerol synthase
Probab=25.30 E-value=2.7e+02 Score=31.68 Aligned_cols=82 Identities=10% Similarity=0.018 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhhCC---CEEEecCcccHHHHHHHHhcCC-CCcccCCHHHHHHHHHhcCEEEeC---CchHH--HHHHhc
Q 012283 339 QVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA-SIVFITTPGQLAALINDSAGVIAT---NTAAI--QLANAR 409 (467)
Q Consensus 339 e~~~~Li~~L~~~~---~Vvl~g~~~e~~~~~~i~~~~~-~~~~~~sL~el~alI~~a~lvIg~---DTG~~--HLAaAl 409 (467)
+...+.+..+.++. .++++|...+++.++....... ++.+..-..+...+++.+|+||-+ ++-++ -=|-|.
T Consensus 562 d~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~ 641 (794)
T PLN02501 562 RELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAM 641 (794)
T ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHc
Confidence 44445555444432 3555565556666666554332 222222223345799999999874 33332 236789
Q ss_pred CCCEEEEeCCC
Q 012283 410 EKPSIALFSSE 420 (467)
Q Consensus 410 g~PtVaLFg~t 420 (467)
|+|+|+-=.+.
T Consensus 642 GlPVVATd~pG 652 (794)
T PLN02501 642 GKFVVCADHPS 652 (794)
T ss_pred CCCEEEecCCC
Confidence 99999986654
No 182
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=25.23 E-value=83 Score=31.25 Aligned_cols=96 Identities=11% Similarity=0.102 Sum_probs=53.2
Q ss_pred ccCcccccccccccCCccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEE-EcCCchhhhhcCCCCCEEEEecCCCC
Q 012283 106 GFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVI-ASARGKQTFELNKNVRWANVYDLDDD 184 (467)
Q Consensus 106 ~~~~~~~~~~~~~r~~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll-~~~~~~~l~~~~p~Id~ii~~~~~~~ 184 (467)
-|..=+..+++....+.+|||||-.| |- .++|++-++.+-.+|+++ .++..-++.+..-.....-.+|.+-.
T Consensus 61 ~yhEml~h~~~~ah~~pk~VLiiGgG---dG----~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~ 133 (282)
T COG0421 61 IYHEMLAHVPLLAHPNPKRVLIIGGG---DG----GTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVE 133 (282)
T ss_pred HHHHHHHhchhhhCCCCCeEEEECCC---cc----HHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceE
Confidence 45555567777778888999998543 32 357888888888888887 44544444443211111001111000
Q ss_pred CCChHHHHHHHHHhHhCCCcEEEEcc
Q 012283 185 WPEPAEYTDILGVMKNRYYDMVLSTK 210 (467)
Q Consensus 185 ~~~~~~~~~l~~~Lr~~~yDlvI~l~ 210 (467)
-.+-+-.++++.... +||+||.-.
T Consensus 134 -i~i~Dg~~~v~~~~~-~fDvIi~D~ 157 (282)
T COG0421 134 -IIIDDGVEFLRDCEE-KFDVIIVDS 157 (282)
T ss_pred -EEeccHHHHHHhCCC-cCCEEEEcC
Confidence 001123345555544 799987654
No 183
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=25.10 E-value=6.5e+02 Score=24.52 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=53.0
Q ss_pred CccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCc------hhhhhcCCCCCEEEEecCCCCCCChHHHHHH
Q 012283 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG------KQTFELNKNVRWANVYDLDDDWPEPAEYTDI 194 (467)
Q Consensus 121 ~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~------~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l 194 (467)
++++|||.-- |.+-.-++..++++|.+..++.++++++.+.+ ....+..++|. ++.+. . ++
T Consensus 169 ~~~~iLi~~G-G~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~-~~~~~--------~---~m 235 (279)
T TIGR03590 169 PLRRVLVSFG-GADPDNLTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNII-LFIDV--------E---NM 235 (279)
T ss_pred ccCeEEEEeC-CcCCcCHHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEE-EEeCH--------H---HH
Confidence 4556755554 44333367888999988777889999998754 23344455543 22211 1 22
Q ss_pred HHHhHhCCCcEEEEcccCCchHHHHHHHhCCCee
Q 012283 195 LGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDR 228 (467)
Q Consensus 195 ~~~Lr~~~yDlvI~l~~~~~~~~ll~~l~gak~r 228 (467)
...++ .-|++|... + .+.+=+...|.+..
T Consensus 236 ~~lm~--~aDl~Is~~--G-~T~~E~~a~g~P~i 264 (279)
T TIGR03590 236 AELMN--EADLAIGAA--G-STSWERCCLGLPSL 264 (279)
T ss_pred HHHHH--HCCEEEECC--c-hHHHHHHHcCCCEE
Confidence 23343 389999954 3 34433566676643
No 184
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=24.97 E-value=1.2e+03 Score=27.71 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=50.7
Q ss_pred CccEEEEEecC--CchhHH----hHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHHHH
Q 012283 121 DVRRCCCIISG--GVYENL----LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDI 194 (467)
Q Consensus 121 ~~~rILII~~~--~IGD~I----l~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l 194 (467)
+.+||||+-.| .||--+ ++..++++||+. +.++.++.... ..+-......|+.+.-+. ..-.+
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~--G~~vI~vn~np-etvs~~~~~aD~~y~ep~--------~~e~v 622 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKE--GYETIMINNNP-ETVSTDYDTADRLYFEPL--------TLEDV 622 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHc--CCEEEEEeCCc-cccccccccCceEEEccC--------CHHHH
Confidence 57899999876 478766 788999999998 78766554432 112222223455432111 12345
Q ss_pred HHHhHhCCCcEEEEcc
Q 012283 195 LGVMKNRYYDMVLSTK 210 (467)
Q Consensus 195 ~~~Lr~~~yDlvI~l~ 210 (467)
+..+++++.|.||-..
T Consensus 623 l~I~~~e~~dgVI~~~ 638 (1068)
T PRK12815 623 LNVAEAENIKGVIVQF 638 (1068)
T ss_pred HHHHhhcCCCEEEEec
Confidence 6667888999999754
No 185
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=24.60 E-value=1.5e+02 Score=29.45 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=18.4
Q ss_pred CHHHHHHHHHhcC-EEEeCCchHHHHH
Q 012283 381 TPGQLAALINDSA-GVIATNTAAIQLA 406 (467)
Q Consensus 381 sL~el~alI~~a~-lvIg~DTG~~HLA 406 (467)
+|.+++.++..-+ +-+|-||.=+|-|
T Consensus 156 ~L~eii~~~~~~~~igvCiDtcH~~Aa 182 (280)
T COG0648 156 ELAEIIDLIEEKERIGVCIDTCHAFAA 182 (280)
T ss_pred hHHHHHHhhcccCceEEEEEchhhhhc
Confidence 4555566666555 8899999888855
No 186
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=24.60 E-value=2.7e+02 Score=22.74 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=50.0
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCch--hhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhHh
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK--QTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKN 200 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~--~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~ 200 (467)
+||.||-.|.+|.. .++++++..|+.+|.-+++.... .-+.....+. .|+ ++ -..+..
T Consensus 1 i~v~iiG~G~~g~~-----~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~---~~~------~~------~~ll~~ 60 (120)
T PF01408_consen 1 IRVGIIGAGSIGRR-----HLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP---VYT------DL------EELLAD 60 (120)
T ss_dssp EEEEEESTSHHHHH-----HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE---EES------SH------HHHHHH
T ss_pred CEEEEECCcHHHHH-----HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc---chh------HH------HHHHHh
Confidence 47778877666544 47788888899999999998643 2222233443 232 11 123445
Q ss_pred CCCcEEEEcccCCchHHHHHHHhC
Q 012283 201 RYYDMVLSTKLAGLGHAAFLFMTT 224 (467)
Q Consensus 201 ~~yDlvI~l~~~~~~~~ll~~l~g 224 (467)
.+.|+|+..........+...++.
T Consensus 61 ~~~D~V~I~tp~~~h~~~~~~~l~ 84 (120)
T PF01408_consen 61 EDVDAVIIATPPSSHAEIAKKALE 84 (120)
T ss_dssp TTESEEEEESSGGGHHHHHHHHHH
T ss_pred hcCCEEEEecCCcchHHHHHHHHH
Confidence 689999998864334444444443
No 187
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=24.44 E-value=6.1e+02 Score=24.02 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=53.5
Q ss_pred CcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCCCEEEecCcccHHH-HHHHHhcCCCCcccCCHHHHHHH
Q 012283 310 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREG-VEDVVGDDASIVFITTPGQLAAL 388 (467)
Q Consensus 310 ~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~~Vvl~g~~~e~~~-~~~i~~~~~~~~~~~sL~el~al 388 (467)
++.|+|-+++-+ . .+|.+++ +|.+.+.+.+-+++..-+.+... ...+. .=..+++-
T Consensus 98 g~tIaVl~~gld-----------~-~yp~~n~-~l~~~i~~~gglliSe~p~~~~~~~~~f~----------~RNriia~ 154 (220)
T TIGR00732 98 GRTIAVLGTGLD-----------Q-IYPRQNS-KLAAKIAENGGLLLSEYPPDTKPIKYNFP----------KRNRIISG 154 (220)
T ss_pred CCEEEEECCCCc-----------c-CCchhhH-HHHHHHHHcCCEEEEecCCCCCCCcccHH----------HHHHHHHH
Confidence 577877764332 2 4887765 67777766652333322221100 00000 01467888
Q ss_pred HHhcCEEEeCC--chHHHHHH---hcCCCEEEEeCCCC
Q 012283 389 INDSAGVIATN--TAAIQLAN---AREKPSIALFSSEL 421 (467)
Q Consensus 389 I~~a~lvIg~D--TG~~HLAa---Alg~PtVaLFg~t~ 421 (467)
++.+-+++... ||.+|.|. ..|+|+.++-|+.+
T Consensus 155 ls~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~~ 192 (220)
T TIGR00732 155 LSRAVLVVEAPLKSGALITARYALEQGREVFAYPGDLN 192 (220)
T ss_pred hcCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCCCC
Confidence 88888999885 88887665 68999999977653
No 188
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=23.95 E-value=1.5e+02 Score=26.63 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=42.0
Q ss_pred EEEecCcccHHHHHHHHhcCCC--Cc----c---cCCHHHHHHHHHh-----cCEEEeCCchHHHH----HHhcCCCEEE
Q 012283 354 LFVIPHEKEREGVEDVVGDDAS--IV----F---ITTPGQLAALIND-----SAGVIATNTAAIQL----ANAREKPSIA 415 (467)
Q Consensus 354 Vvl~g~~~e~~~~~~i~~~~~~--~~----~---~~sL~el~alI~~-----a~lvIg~DTG~~HL----AaAlg~PtVa 415 (467)
.++.|+..|.+.+++....+.. +. . -.++.++..+++. +++||+.-.+..|| |+-...|+|+
T Consensus 4 ~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~PVIg 83 (150)
T PF00731_consen 4 AIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTLPVIG 83 (150)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-EEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCCCEEE
Confidence 4667888888777776554432 11 1 2466677777654 68999988887776 5567899999
Q ss_pred EeCCC
Q 012283 416 LFSSE 420 (467)
Q Consensus 416 LFg~t 420 (467)
+=-++
T Consensus 84 vP~~~ 88 (150)
T PF00731_consen 84 VPVSS 88 (150)
T ss_dssp EEE-S
T ss_pred eecCc
Confidence 94444
No 189
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=23.90 E-value=3.1e+02 Score=26.71 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=45.1
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCC-chhhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhHhC
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASAR-GKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~-~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~~ 201 (467)
|||||+ +|=|| ...+.+.|.++ +.++...+... ..+++...+.+ .++. ..- +...+...++++
T Consensus 1 m~ILvl--GGT~e---gr~la~~L~~~--g~~v~~s~~t~~~~~~~~~~g~~-~v~~-g~l-------~~~~l~~~l~~~ 64 (256)
T TIGR00715 1 MTVLLM--GGTVD---SRAIAKGLIAQ--GIEILVTVTTSEGKHLYPIHQAL-TVHT-GAL-------DPQELREFLKRH 64 (256)
T ss_pred CeEEEE--echHH---HHHHHHHHHhC--CCeEEEEEccCCccccccccCCc-eEEE-CCC-------CHHHHHHHHHhc
Confidence 566665 66666 67778888765 56666666554 45566655444 2332 211 122345667888
Q ss_pred CCcEEEEccc
Q 012283 202 YYDMVLSTKL 211 (467)
Q Consensus 202 ~yDlvI~l~~ 211 (467)
+.|+|||...
T Consensus 65 ~i~~VIDAtH 74 (256)
T TIGR00715 65 SIDILVDATH 74 (256)
T ss_pred CCCEEEEcCC
Confidence 9999999884
No 190
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=23.69 E-value=4.2e+02 Score=28.20 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhhCC--C-EEEecCc-cc---HHHHHHHHhcCC---CCcccCCHHHHHHHHH---hcCEEEeCCchHHHH
Q 012283 339 QVWAEIANGLREFR--P-LFVIPHE-KE---REGVEDVVGDDA---SIVFITTPGQLAALIN---DSAGVIATNTAAIQL 405 (467)
Q Consensus 339 e~~~~Li~~L~~~~--~-Vvl~g~~-~e---~~~~~~i~~~~~---~~~~~~sL~el~alI~---~a~lvIg~DTG~~HL 405 (467)
++...+.+.+.+-+ + +++.+.. .+ .+..+++.+... .+....++.|+...+. ..|++||+--+ .++
T Consensus 319 ~~~~~l~~fl~Elg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~d~~el~~~l~~~~~~dllig~s~~-~~~ 397 (457)
T TIGR02932 319 DLVIGLAEFCLEVELEPVLLLLGDDNSKYKKDPRIEELKNKANFDIEVVWNADLWELEKRIKAKLDIDLIMGHSKG-RYV 397 (457)
T ss_pred HHHHHHHHHHHHCCCeEEEEEECCCCccccchHHHHHHHhhcCCCceEEeCCCHHHHHHHHhhcCCCCEEEECCch-HHH
Confidence 45667778777665 3 4445542 11 233444543221 2233578888887654 59999999876 999
Q ss_pred HHhcCCCEEEEeCCC
Q 012283 406 ANAREKPSIALFSSE 420 (467)
Q Consensus 406 AaAlg~PtVaLFg~t 420 (467)
|..+|+|.+-+--|.
T Consensus 398 A~klgip~~~~g~Pv 412 (457)
T TIGR02932 398 AIDANIPMVRVGFPT 412 (457)
T ss_pred HHHcCCCEEEecCCc
Confidence 999999998774343
No 191
>PLN02366 spermidine synthase
Probab=23.67 E-value=1.9e+02 Score=29.13 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=27.4
Q ss_pred cCcccccccccccCCccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEE
Q 012283 107 FNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIA 159 (467)
Q Consensus 107 ~~~~~~~~~~~~r~~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~ 159 (467)
|..=+.++++..-.+.+|+|+|-.|. |= +++++.+..+..+|+++=
T Consensus 77 Y~e~l~h~~l~~~~~pkrVLiIGgG~-G~------~~rellk~~~v~~V~~VE 122 (308)
T PLN02366 77 YQEMITHLPLCSIPNPKKVLVVGGGD-GG------VLREIARHSSVEQIDICE 122 (308)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEcCCc-cH------HHHHHHhCCCCCeEEEEE
Confidence 43334556665567789999987654 22 345665443335777764
No 192
>PLN02210 UDP-glucosyl transferase
Probab=23.66 E-value=3.8e+02 Score=28.47 Aligned_cols=137 Identities=14% Similarity=0.010 Sum_probs=73.8
Q ss_pred CcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-C-EEEecCcccHHHHHHHHhcC--CCCcccCCHHHH
Q 012283 310 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-P-LFVIPHEKEREGVEDVVGDD--ASIVFITTPGQL 385 (467)
Q Consensus 310 ~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~-~-Vvl~g~~~e~~~~~~i~~~~--~~~~~~~sL~el 385 (467)
+..|.++-|+.. ..+.+++.+++..|...+ + |..++.....+..+.+.+.. ++..+..-..|
T Consensus 269 ~svvyvsfGS~~-------------~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ- 334 (456)
T PLN02210 269 SSVVYISFGSML-------------ESLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQ- 334 (456)
T ss_pred CceEEEEecccc-------------cCCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCCH-
Confidence 467777754321 267899999999999887 4 33343221111111122221 11111222233
Q ss_pred HHHHHhcC--EEEeCC-chHHHHHHhcCCCEEEEeCCCCCCCccccCCCC-CceE-eecCCCCCCCCCCHHHHHHHHHHH
Q 012283 386 AALINDSA--GVIATN-TAAIQLANAREKPSIALFSSELKGRLFVPNAEE-KKCT-VISSRTGKLIDTPVEAVLNAMQIF 460 (467)
Q Consensus 386 ~alI~~a~--lvIg~D-TG~~HLAaAlg~PtVaLFg~t~p~~~~~P~~~~-~~c~-i~~~~~~cm~~Is~e~V~~ai~~l 460 (467)
..++++++ +||+.- -+-++=|...|+|.|++=--.+-. .++=.-.+ ..+- .+.... --..++.++|.++++++
T Consensus 335 ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~-~na~~~~~~~g~G~~l~~~~-~~~~~~~~~l~~av~~~ 412 (456)
T PLN02210 335 EKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQP-IDARLLVDVFGIGVRMRNDA-VDGELKVEEVERCIEAV 412 (456)
T ss_pred HHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccH-HHHHHHHHHhCeEEEEeccc-cCCcCCHHHHHHHHHHH
Confidence 46899998 999876 467788889999999873322210 10000000 0111 111110 01257999999999998
Q ss_pred HH
Q 012283 461 NE 462 (467)
Q Consensus 461 l~ 462 (467)
+.
T Consensus 413 m~ 414 (456)
T PLN02210 413 TE 414 (456)
T ss_pred hc
Confidence 84
No 193
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.60 E-value=4.6e+02 Score=27.28 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=26.7
Q ss_pred CCCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC
Q 012283 308 EQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR 352 (467)
Q Consensus 308 ~~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~~ 352 (467)
+++.+|++|+-+-+. +. . ....|+|.+|++.+.+++
T Consensus 170 ~~~~vvLLH~CcHNP----TG---~--D~t~~qW~~l~~~~~~r~ 205 (396)
T COG1448 170 PEGSVVLLHGCCHNP----TG---I--DPTEEQWQELADLIKERG 205 (396)
T ss_pred CCCCEEEEecCCCCC----CC---C--CCCHHHHHHHHHHHHHcC
Confidence 457799999643332 22 1 478999999999999998
No 194
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=23.49 E-value=1.7e+02 Score=27.53 Aligned_cols=48 Identities=15% Similarity=0.003 Sum_probs=35.0
Q ss_pred ccEEEEEecCCchhH----HhHHHHHHHHHHHCCCcEEEEEEcCCchhhhh-cCCCCCE
Q 012283 122 VRRCCCIISGGVYEN----LLFFPAIQLLKDRYPGVLIDVIASARGKQTFE-LNKNVRW 175 (467)
Q Consensus 122 ~~rILII~~~~IGD~----Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~-~~p~Id~ 175 (467)
++|||+|..+-.||. .+.--++...|+++|+.+|... +|++ ..|++|.
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~------DL~~e~iP~ld~ 53 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIER------DLAAEPIPHLDE 53 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEe------ecccCCCcccCH
Confidence 358999999888885 5566778889999999998764 3333 2566664
No 195
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=23.48 E-value=1.4e+02 Score=28.04 Aligned_cols=46 Identities=22% Similarity=0.163 Sum_probs=38.4
Q ss_pred CccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhh
Q 012283 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (467)
Q Consensus 121 ~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~ 168 (467)
..+||++-.+|++|=.-.+.-+++.|++. +++|+++.++....+..
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~--G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDE--GAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhC--cCEEEEEECHhHHHHhh
Confidence 35789999999999776678889999887 89999999988776544
No 196
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=23.42 E-value=3.4e+02 Score=28.80 Aligned_cols=82 Identities=11% Similarity=0.028 Sum_probs=48.9
Q ss_pred CCccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCch-hhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHh
Q 012283 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK-QTFELNKNVRWANVYDLDDDWPEPAEYTDILGVM 198 (467)
Q Consensus 120 ~~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~-~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~L 198 (467)
+..+||||+..|-++ .++++++|+. +.++..+++.... ... ....|+.+.+.....-.+....-.++...
T Consensus 3 ~~~~~vLi~~~geia-----~~ii~aa~~l--G~~~v~~~s~~d~~~~~--~~~aD~~~~i~p~~~~~~y~d~~~i~~~a 73 (467)
T PRK12833 3 SRIRKVLVANRGEIA-----VRIIRAAREL--GMRTVAACSDADRDSLA--ARMADEAVHIGPSHAAKSYLNPAAILAAA 73 (467)
T ss_pred CCCcEEEEECCcHHH-----HHHHHHHHHc--CCeEEEEECCCCCCChh--HHhCCEEEecCCCCccccccCHHHHHHHH
Confidence 457899999887665 6888999987 7887766653211 111 12367766543221101122233456667
Q ss_pred HhCCCcEEEEcc
Q 012283 199 KNRYYDMVLSTK 210 (467)
Q Consensus 199 r~~~yDlvI~l~ 210 (467)
++.+.|.|+-..
T Consensus 74 ~~~~~daI~pg~ 85 (467)
T PRK12833 74 RQCGADAIHPGY 85 (467)
T ss_pred HHhCCCEEEECC
Confidence 778899998654
No 197
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=23.27 E-value=1.8e+02 Score=26.49 Aligned_cols=46 Identities=24% Similarity=0.300 Sum_probs=34.6
Q ss_pred ccEEEEEecCCchhH-HhHHHHHHHHHHHCCCcEEEEEEcCCchhhhh
Q 012283 122 VRRCCCIISGGVYEN-LLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (467)
Q Consensus 122 ~~rILII~~~~IGD~-Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~ 168 (467)
.|||.--.+ |=||. .-+.-++..||+.||+.+|+++.++...++++
T Consensus 8 ~~rIaWgIT-GaG~~L~Et~~imk~lk~~~~~~~v~v~lSkageeVvk 54 (187)
T COG1036 8 KKRIAWGIT-GAGHLLPETYQIMKELKKEYGDVEVDVFLSKAGEEVVK 54 (187)
T ss_pred cceEEEEEe-ccccccHHHHHHHHHHHhhcCCceEEEeehhhHHHHHH
Confidence 345544444 55775 45678899999999999999999998776654
No 198
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=23.19 E-value=54 Score=34.27 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=49.2
Q ss_pred cccccccccCCccEEEEEecCCchhHHhHHH-------------HHHHHHHHCCCcEEEEEEcCCchhhhh
Q 012283 111 IASLPLKIRGDVRRCCCIISGGVYENLLFFP-------------AIQLLKDRYPGVLIDVIASARGKQTFE 168 (467)
Q Consensus 111 ~~~~~~~~r~~~~rILII~~~~IGD~Il~tP-------------~l~aLk~~yP~a~I~ll~~~~~~~l~~ 168 (467)
|++++...++.-.|+.|....|+|..=++|| +++.||++||++++..+...-.+.++-
T Consensus 143 Vr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~ 213 (409)
T KOG1838|consen 143 VRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILT 213 (409)
T ss_pred HHHHHHHHHhCCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHHHhCCCCceEEEEecchHHHHH
Confidence 6677777888889999999999988888877 688999999999999998887665553
No 199
>PLN02316 synthase/transferase
Probab=22.86 E-value=5.6e+02 Score=30.43 Aligned_cols=79 Identities=8% Similarity=0.008 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhCC-CEEEec-Cccc--HHHHHHHHhcC----CC-CcccCCHHH-H-HHHHHhcCEEEeCC----chH
Q 012283 338 IQVWAEIANGLREFR-PLFVIP-HEKE--REGVEDVVGDD----AS-IVFITTPGQ-L-AALINDSAGVIATN----TAA 402 (467)
Q Consensus 338 ~e~~~~Li~~L~~~~-~Vvl~g-~~~e--~~~~~~i~~~~----~~-~~~~~sL~e-l-~alI~~a~lvIg~D----TG~ 402 (467)
.+...+.+..+.+.+ .++++| |++. ++.++++.... ++ +.+.....+ + ..+++.||+||-+- .|.
T Consensus 855 vdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GL 934 (1036)
T PLN02316 855 IHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGL 934 (1036)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccH
Confidence 445555555555444 344444 4332 23344444422 21 222222233 3 36999999999763 255
Q ss_pred HH-HHHhcCCCEEEE
Q 012283 403 IQ-LANAREKPSIAL 416 (467)
Q Consensus 403 ~H-LAaAlg~PtVaL 416 (467)
.. .|-+.|+|.|+-
T Consensus 935 vqLEAMa~GtppVvs 949 (1036)
T PLN02316 935 TQLTAMRYGSIPVVR 949 (1036)
T ss_pred HHHHHHHcCCCeEEE
Confidence 54 577999988883
No 200
>PLN02949 transferase, transferring glycosyl groups
Probab=22.69 E-value=2.6e+02 Score=29.73 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=28.6
Q ss_pred CCccEEEEEecCC-ch---hHHhHHHHHHHHHHHCCCcEEEEEEc
Q 012283 120 GDVRRCCCIISGG-VY---ENLLFFPAIQLLKDRYPGVLIDVIAS 160 (467)
Q Consensus 120 ~~~~rILII~~~~-IG---D~Il~tP~l~aLk~~yP~a~I~ll~~ 160 (467)
...++|.+++++. +| |=++-- ++++|.+..++.++.+.++
T Consensus 31 ~~~~~v~f~HP~~~~ggG~ERvl~~-a~~~l~~~~~~~~v~iyt~ 74 (463)
T PLN02949 31 SRKRAVGFFHPYTNDGGGGERVLWC-AVRAIQEENPDLDCVIYTG 74 (463)
T ss_pred CCCcEEEEECCCCCCCCChhhHHHH-HHHHHHhhCCCCeEEEEcC
Confidence 3455899999863 55 555443 4677778889999999994
No 201
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.51 E-value=7.5e+02 Score=24.36 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=14.3
Q ss_pred cCCHHHHHHHHHhcCEEEeC
Q 012283 379 ITTPGQLAALINDSAGVIAT 398 (467)
Q Consensus 379 ~~sL~el~alI~~a~lvIg~ 398 (467)
..+..+...+.+.||.+|..
T Consensus 214 Is~~e~~~~v~~~ADGVIVG 233 (265)
T COG0159 214 ISSPEQAAQVAEAADGVIVG 233 (265)
T ss_pred cCCHHHHHHHHHhCCeEEEc
Confidence 45677777777778877753
No 202
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=22.46 E-value=1.5e+02 Score=27.63 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=36.8
Q ss_pred cEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhh
Q 012283 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (467)
Q Consensus 123 ~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~ 168 (467)
+||++-.+|++|=.-....+++.|++. +++|+++.++....+..
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~--g~~V~vI~S~~A~~~~~ 44 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDE--GAEVTPIVSETVQTTDT 44 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhC--cCEEEEEEchhHHHHHH
Confidence 589999999999877777999999887 89999999988765333
No 203
>PTZ00081 enolase; Provisional
Probab=22.21 E-value=2.7e+02 Score=29.58 Aligned_cols=82 Identities=7% Similarity=0.114 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHhhhCCCEEEecCc---ccHHHHHHHH-hcCCCCc-c----cCCHHHHHHHHH---hc--CEEE-----
Q 012283 336 LPIQVWAEIANGLREFRPLFVIPHE---KEREGVEDVV-GDDASIV-F----ITTPGQLAALIN---DS--AGVI----- 396 (467)
Q Consensus 336 WP~e~~~~Li~~L~~~~~Vvl~g~~---~e~~~~~~i~-~~~~~~~-~----~~sL~el~alI~---~a--~lvI----- 396 (467)
+..+.|++|.+.+-.. +.+.+++ .....+...+ ....+.. . .-++.++..+++ .. .++|
T Consensus 309 ~D~eg~~~Lt~~lg~~--i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iishrsg 386 (439)
T PTZ00081 309 DDWEAYAKLTAAIGQK--VQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHRSG 386 (439)
T ss_pred ccHHHHHHHHHhhCCC--ceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEEeCCCc
Confidence 5567788887766222 3333433 2233333333 2222321 1 345655544443 33 4567
Q ss_pred -eCCchHHHHHHhcCCCEEEEeCC
Q 012283 397 -ATNTAAIQLANAREKPSIALFSS 419 (467)
Q Consensus 397 -g~DTG~~HLAaAlg~PtVaLFg~ 419 (467)
+.||..+|||.++|...|-.=++
T Consensus 387 ETed~~iadLAVa~~~~~iK~G~~ 410 (439)
T PTZ00081 387 ETEDTFIADLVVGLGTGQIKTGAP 410 (439)
T ss_pred hhHHHHHHHHHHHcCCCceecCCC
Confidence 67999999999999988754433
No 204
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=21.84 E-value=1.2e+02 Score=27.77 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhCCCEEEecCcccHHHHHHHHhcCCCCcccCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCC--CEEEE
Q 012283 339 QVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREK--PSIAL 416 (467)
Q Consensus 339 e~~~~Li~~L~~~~~Vvl~g~~~e~~~~~~i~~~~~~~~~~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~--PtVaL 416 (467)
.+..+|++.+.+.+..++-.. ..|+.|.+++++.|+++||.-.+.+|-+.-+.. -+|.|
T Consensus 119 ~Ne~el~~~l~~~~~~~v~~~-------------------~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei 179 (206)
T PF04577_consen 119 LNEDELLEILKKYGFEVVDPE-------------------DLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEI 179 (206)
T ss_pred cCHHHHHHHHhhCCeEEEeCC-------------------CCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEE
Confidence 456677777776663222211 357899999999999999999988887665433 34444
Q ss_pred eCC
Q 012283 417 FSS 419 (467)
Q Consensus 417 Fg~ 419 (467)
+.+
T Consensus 180 ~~~ 182 (206)
T PF04577_consen 180 FPP 182 (206)
T ss_pred eCC
Confidence 344
No 205
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=21.65 E-value=4.8e+02 Score=26.20 Aligned_cols=90 Identities=22% Similarity=0.206 Sum_probs=61.5
Q ss_pred CCCCCCCCCCccc------ccCCccCccc-ccccccccCCccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcC
Q 012283 89 RPPDDPNNPYGFL------KFPMGFNPEI-ASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (467)
Q Consensus 89 ~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~r~~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~ 161 (467)
.||.+|+-|.|-. ..|..+ +-| -.-+-++-+|..+=+|..-||-|-.-|.+-++..|++..-+.+|+++-..
T Consensus 235 PPp~~~~~PpG~mSSyi~sLKpGDK-vtisGPfGEfFaKdtdaemvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGA 313 (410)
T COG2871 235 PPPRNPDAPPGQMSSYIWSLKPGDK-VTISGPFGEFFAKDTDAEMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGA 313 (410)
T ss_pred CCCCCCCCCccceeeeEEeecCCCe-EEEeccchhhhhccCCCceEEEecCcCcCchHHHHHHHHHhhcccceeeeeecc
Confidence 4788888776643 223322 000 01144566777788888889999999999999999999999999999776
Q ss_pred Cc----------hhhhhcCCCCCEEEEe
Q 012283 162 RG----------KQTFELNKNVRWANVY 179 (467)
Q Consensus 162 ~~----------~~l~~~~p~Id~ii~~ 179 (467)
+. .+|-+.+|+......+
T Consensus 314 RS~rE~fY~Ed~d~L~ae~pNF~wH~aL 341 (410)
T COG2871 314 RSLREMFYQEDFDQLQAENPNFHWHLAL 341 (410)
T ss_pred chHHHhHHHHHHHHHHhhCCCcEEEEEe
Confidence 43 3345556766554443
No 206
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=21.61 E-value=2.7e+02 Score=29.08 Aligned_cols=36 Identities=28% Similarity=0.225 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHhc-----CEEEe------CCchHHHHHHhcCCCEEE
Q 012283 380 TTPGQLAALINDS-----AGVIA------TNTAAIQLANAREKPSIA 415 (467)
Q Consensus 380 ~sL~el~alI~~a-----~lvIg------~DTG~~HLAaAlg~PtVa 415 (467)
-||.|+...|+.| ..+|+ .||-..|||.|++++.|=
T Consensus 339 GTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa~~agqIK 385 (423)
T COG0148 339 GTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVATNAGQIK 385 (423)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEecCCCCcccchHHHHHHHhCCCeee
Confidence 5677666665544 46777 599999999999999874
No 207
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=21.30 E-value=87 Score=31.57 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=26.5
Q ss_pred EecCCchhHHhHHHHHHHHHHHCCCcEEEEEE
Q 012283 128 IISGGVYENLLFFPAIQLLKDRYPGVLIDVIA 159 (467)
Q Consensus 128 I~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~ 159 (467)
+-..|=||+.-++-++++||++||+..|..=.
T Consensus 213 tgaaGd~Df~atL~AvE~Lr~~fP~m~IE~GM 244 (466)
T PF09505_consen 213 TGAAGDGDFYATLKAVEALRKKFPNMYIEMGM 244 (466)
T ss_pred cccCCChhHHHHHHHHHHHHHhCcceeEeccc
Confidence 34456799999999999999999998886543
No 208
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=21.26 E-value=4.5e+02 Score=26.69 Aligned_cols=27 Identities=7% Similarity=-0.024 Sum_probs=14.5
Q ss_pred cccccccCCccEEEEEecCCchhHHhH
Q 012283 113 SLPLKIRGDVRRCCCIISGGVYENLLF 139 (467)
Q Consensus 113 ~~~~~~r~~~~rILII~~~~IGD~Il~ 139 (467)
.++..+++.--+|.++......+.+..
T Consensus 14 ~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 40 (392)
T TIGR01426 14 GVVEELVARGHRVTYATTEEFAERVEA 40 (392)
T ss_pred HHHHHHHhCCCeEEEEeCHHHHHHHHH
Confidence 344445555556666666555544433
No 209
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=21.23 E-value=1.6e+02 Score=30.41 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHhhhC---CCEEEecCcccHHHHHHHHhcCCCCc-c-cCCHHHHHHHHHh---cCEEEeCCchH----
Q 012283 335 LLPIQVWAEIANGLREF---RPLFVIPHEKEREGVEDVVGDDASIV-F-ITTPGQLAALIND---SAGVIATNTAA---- 402 (467)
Q Consensus 335 rWP~e~~~~Li~~L~~~---~~Vvl~g~~~e~~~~~~i~~~~~~~~-~-~~sL~el~alI~~---a~lvIg~DTG~---- 402 (467)
+|-.|++.++++.|.+. +.+++.-|+.|.+.++++-= ..+.. . ..++.+-+..|-. .+++|+.|--+
T Consensus 4 ~~~~~~~~~~~~~l~~~~~~~~~ilveg~~d~~~l~~lgi-~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~D~d~~G~~ 82 (360)
T PRK14719 4 QESLEKLLLIIDDLKLLAEKGIPILVEGPNDILSLKNLKI-NANFITVSNTPVFQIADDLIAENISEVILLTDFDRAGRV 82 (360)
T ss_pred HHHHHHHHHHHHHHHHhhhCCCEEEEEcchHHHHHHHcCC-CCcEEEEeCCchHHHHHHHHHcCCCEEEEEECCCCCCCc
Confidence 36689999999999854 46788899999887665421 11221 1 3455665555533 67999986322
Q ss_pred -----HHHHHhcCCCEEEEeC
Q 012283 403 -----IQLANAREKPSIALFS 418 (467)
Q Consensus 403 -----~HLAaAlg~PtVaLFg 418 (467)
..+=...|+.+..++-
T Consensus 83 ~~~~~~~~L~~aGi~V~~~l~ 103 (360)
T PRK14719 83 YAKNIMEEFQSRGIKVNNLIR 103 (360)
T ss_pred cchHHHHHHHHCCCEEEeehH
Confidence 3444567787765543
No 210
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=21.22 E-value=5.4e+02 Score=27.10 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHhc----CEEEeCCchHHHHHH
Q 012283 380 TTPGQLAALINDS----AGVIATNTAAIQLAN 407 (467)
Q Consensus 380 ~sL~el~alI~~a----~lvIg~DTG~~HLAa 407 (467)
.++.++..+|... ++-|+-||+-+|.|.
T Consensus 285 ~~~eeL~~Iid~v~~~~rlGvCLDTcHafaAG 316 (413)
T PTZ00372 285 SKFEDLRDIIALVEDKSRVGVCLDTCHLFAAG 316 (413)
T ss_pred CCHHHHHHHHHhcCCcCCeEEEEEHHHHHhcC
Confidence 4678888888754 589999999998665
No 211
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=21.09 E-value=1.9e+02 Score=28.33 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=28.2
Q ss_pred cEEEEEecCCc--hhHHhHHHHHHHHHHHCCCcEEEEEEcCCc
Q 012283 123 RRCCCIISGGV--YENLLFFPAIQLLKDRYPGVLIDVIASARG 163 (467)
Q Consensus 123 ~rILII~~~~I--GD~Il~tP~l~aLk~~yP~a~I~ll~~~~~ 163 (467)
||||++..... |-...+.-+.++|++. |.++++++....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~--G~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAA--GVDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhc--CCceeEEEeecc
Confidence 78999976532 4456666678888886 678888887654
No 212
>PF12466 GDH_N: Glutamate dehydrogenase N terminal; InterPro: IPR024727 Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyse the reversible oxidative deamination of glutamate to ketoglutarate and ammonia []. This entry represents a domain found in the N-terminal region of a bacterial family of putative GDHs.
Probab=20.99 E-value=52 Score=24.14 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=15.3
Q ss_pred HHhHHHHHHHHHHHCCCc
Q 012283 136 NLLFFPAIQLLKDRYPGV 153 (467)
Q Consensus 136 ~Il~tP~l~aLk~~yP~a 153 (467)
.+..-|++.+||++||-+
T Consensus 32 ~v~LepVfaALRkryPaa 49 (60)
T PF12466_consen 32 MVSLEPVFAALRKRYPAA 49 (60)
T ss_pred ccchhHHHHHHHHhCcHH
Confidence 466789999999999965
No 213
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.94 E-value=4.3e+02 Score=26.29 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=28.7
Q ss_pred ccccCCccEEEEEec---CCchhHHhHHHHHHHHHHHCCCcEEEEEEc
Q 012283 116 LKIRGDVRRCCCIIS---GGVYENLLFFPAIQLLKDRYPGVLIDVIAS 160 (467)
Q Consensus 116 ~~~r~~~~rILII~~---~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~ 160 (467)
..+...++||-||-. .+++|++ +.+++++|..+|.+.=.
T Consensus 8 ~~lP~~p~~I~vITs~~gAa~~D~~------~~~~~r~~~~~~~~~p~ 49 (319)
T PF02601_consen 8 KPLPKFPKRIAVITSPTGAAIQDFL------RTLKRRNPIVEIILYPA 49 (319)
T ss_pred CCCCCCCCEEEEEeCCchHHHHHHH------HHHHHhCCCcEEEEEec
Confidence 346677889999975 3789974 56777999888876533
No 214
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=20.84 E-value=6.1e+02 Score=27.42 Aligned_cols=80 Identities=10% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHHHhhh-CC-CEEEecC--cccHHHHHHHHhcCC-CCcccCCHHHHHHHHHh--cCEEEeCCchHHHHHHhcCCC
Q 012283 340 VWAEIANGLRE-FR-PLFVIPH--EKEREGVEDVVGDDA-SIVFITTPGQLAALIND--SAGVIATNTAAIQLANAREKP 412 (467)
Q Consensus 340 ~~~~Li~~L~~-~~-~Vvl~g~--~~e~~~~~~i~~~~~-~~~~~~sL~el~alI~~--a~lvIg~DTG~~HLAaAlg~P 412 (467)
+...+++.|.+ -| .++..+. ..+.+..++...... +..+..++.|+...|+. .|++||+- ---|+|.-+|+|
T Consensus 304 ~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~~D~~el~~~i~~~~PdliiG~~-~er~~a~~lgiP 382 (519)
T PRK02910 304 HAVAAARILSDELGFEVVGAGTYLREDARWVRAAAKEYGDEALITDDYLEVEDAIAEAAPELVLGTQ-MERHSAKRLGIP 382 (519)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCcchhHHHHHHHHhcCCCeEEecCHHHHHHHHHhcCCCEEEEcc-hHHHHHHHcCCC
Confidence 55678888874 46 4554444 222333443333332 33334577888888776 89999654 778999999999
Q ss_pred EEEEeCCC
Q 012283 413 SIALFSSE 420 (467)
Q Consensus 413 tVaLFg~t 420 (467)
.+.+-.|.
T Consensus 383 ~~~i~~Pv 390 (519)
T PRK02910 383 CAVISAPT 390 (519)
T ss_pred EEEecccc
Confidence 98875544
No 215
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=20.83 E-value=1e+03 Score=25.14 Aligned_cols=75 Identities=7% Similarity=0.064 Sum_probs=45.4
Q ss_pred HHHH-HhhhCC-CEEEecCcc-cHHHHHHHHhcCCC--Ccc-cCCHHHHHHHHHh--cCEEEeCCchHHHHHHhcCCCEE
Q 012283 343 EIAN-GLREFR-PLFVIPHEK-EREGVEDVVGDDAS--IVF-ITTPGQLAALIND--SAGVIATNTAAIQLANAREKPSI 414 (467)
Q Consensus 343 ~Li~-~L~~~~-~Vvl~g~~~-e~~~~~~i~~~~~~--~~~-~~sL~el~alI~~--a~lvIg~DTG~~HLAaAlg~PtV 414 (467)
.+++ .+.+-| .++..+.+. ..+..+......+. +.. ..+..++...++. .|++||+--| -|+|.-+|+|.+
T Consensus 331 ~~~~~ll~elGm~v~~~~~~~~~~~~~~~~l~~l~~~~~~v~~~~~~e~~~~i~~~~pdllig~s~~-~~~A~~lgip~~ 409 (443)
T TIGR01862 331 HWIGSAEEDLGMEVVAVGYEFAHEDDYEKTMKRMGEGTLLIDDPNELEFEEILEKLKPDIIFSGIKE-KFVAQKLGVPYR 409 (443)
T ss_pred HHHHHHHHHCCCEEEEeccccccHHHHHHHHHhCCCceEEecCCCHHHHHHHHHhcCCCEEEEcCcc-hhhhhhcCCCeE
Confidence 4555 444556 354444443 23222333333332 111 4566777766655 8999999877 899999999998
Q ss_pred EEeC
Q 012283 415 ALFS 418 (467)
Q Consensus 415 aLFg 418 (467)
-+++
T Consensus 410 ~~~~ 413 (443)
T TIGR01862 410 QMHS 413 (443)
T ss_pred ecCC
Confidence 7654
No 216
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=20.81 E-value=7.2e+02 Score=23.49 Aligned_cols=118 Identities=11% Similarity=0.131 Sum_probs=72.5
Q ss_pred eeecCHHHHHHHHHHHHHcCCC------CCcEEEEecCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhC---C-CE--
Q 012283 287 RVSISRRLKEVVAEKYKNAGAE------QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREF---R-PL-- 354 (467)
Q Consensus 287 ~l~l~~~~~~~a~~~l~~~~l~------~~~~I~i~pgas~s~~~~~~r~~~K~rWP~e~~~~Li~~L~~~---~-~V-- 354 (467)
..++|+....+...++...+.+ -.-+|++-+ - .|...+ .|.+-+-+.++.++++ | .|
T Consensus 44 scYmPpsVy~El~~fl~~~~~~~e~~~kl~twv~~Ks---P------~rye~~--IPA~i~ye~I~e~R~RInkGLRVAE 112 (206)
T TIGR03875 44 ECYMPPSVYKELRRFLERNGCDPETLAKLDTWVVKKS---P------NRYEVK--IPAEIFYEYIEEVRERIDKGLRVAE 112 (206)
T ss_pred eeecCHHHHHHHHHHHHhcCCCHHHHHhheeEEEEcC---C------Ceeeee--ccHHHHHHHHHHHHHHHhcchhHHH
Confidence 5567777777777888777664 134676663 1 224444 8999999999998865 3 12
Q ss_pred ------EEecC--------ccc-HHHHHHHHhcCCC-----Ccc-cCCHHHHHHHHHhcCEEEeCCchHHHHHHhcCCCE
Q 012283 355 ------FVIPH--------EKE-REGVEDVVGDDAS-----IVF-ITTPGQLAALINDSAGVIATNTAAIQLANAREKPS 413 (467)
Q Consensus 355 ------vl~g~--------~~e-~~~~~~i~~~~~~-----~~~-~~sL~el~alI~~a~lvIg~DTG~~HLAaAlg~Pt 413 (467)
...+. +.+ -+.+..+.+.+-. +.. .+++.-++-.+..-..+||.|-|...+|.-+|+..
T Consensus 113 e~vrea~~~~~~~~~~~~~~~~~~~~I~~lRekYReAlR~GiLdS~~DidvlaLA~ELda~lvTdD~giqn~A~~Lgi~~ 192 (206)
T TIGR03875 113 EHVREAALAGDEISAEHEKKEEVGKIIRKLREKYREALRKGILDSAEDLDVLLLAKELDAAVVSADEGIRKWAERLGLRF 192 (206)
T ss_pred HHHHHHhhcccchhccccccccHHHHHHHHHHHHHHHHHccccCchhhHHHHHHHHHcCcEEEeCcHHHHHHHHHcCCee
Confidence 11111 111 1222233322211 112 45566666666667889999999999999999987
Q ss_pred EE
Q 012283 414 IA 415 (467)
Q Consensus 414 Va 415 (467)
+.
T Consensus 193 ~~ 194 (206)
T TIGR03875 193 VD 194 (206)
T ss_pred ec
Confidence 64
No 217
>PF13638 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_B 2WP8_J.
Probab=20.65 E-value=1.4e+02 Score=25.20 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcC-----EEEeCCchHHHHHHhcCCCEEEE
Q 012283 382 PGQLAALINDSA-----GVIATNTAAIQLANAREKPSIAL 416 (467)
Q Consensus 382 L~el~alI~~a~-----lvIg~DTG~~HLAaAlg~PtVaL 416 (467)
+.+.+..++.-. ++||+|.+..=.|.+.|+|++.+
T Consensus 93 Il~~a~~~~~~~~~~~vvLvT~D~~l~~~A~~~gi~~~~~ 132 (133)
T PF13638_consen 93 ILNCALYLQEENPGRKVVLVTNDKNLRLKARAEGIPAVSY 132 (133)
T ss_dssp HHHHHHHHHHHCGCEEEEEEE--HHHHHHHHHTT--EE--
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHhhcccccccC
Confidence 455666666666 89999999999999999999753
No 218
>PLN02448 UDP-glycosyltransferase family protein
Probab=20.45 E-value=1.9e+02 Score=30.77 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=47.6
Q ss_pred CCccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcC---CCCCEEEEec
Q 012283 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN---KNVRWANVYD 180 (467)
Q Consensus 120 ~~~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~---p~Id~ii~~~ 180 (467)
.+.-+|+++-..+.|++.=++.+.+.|..+.|+..|++++.+.+...++.. +.|+ ++.++
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~-fv~lp 70 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIR-FATIP 70 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEE-EEECC
Confidence 345589999999999999999999999987789999999999877655553 3453 44554
No 219
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=20.18 E-value=2.8e+02 Score=28.00 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=43.0
Q ss_pred CchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhc-CCCCCEEEEecCCCCCCChHHH--HHHHHHhHhCCCcEEEE
Q 012283 132 GVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL-NKNVRWANVYDLDDDWPEPAEY--TDILGVMKNRYYDMVLS 208 (467)
Q Consensus 132 ~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~-~p~Id~ii~~~~~~~~~~~~~~--~~l~~~Lr~~~yDlvI~ 208 (467)
++-|++.++--+..+.+..+.-.|.++.....++-++. +|. ..|+.-+.... -...+. ..-++++|+++.|.+|.
T Consensus 33 ~~aD~~gdS~~l~~~a~~~~~~~IvF~gv~fMae~a~~l~p~-k~vilp~~~a~-C~~a~~~~~~~i~~lk~~~Pda~vv 110 (310)
T TIGR00550 33 QIADYTGDSLELAQIAAKTDADIIVFCGVHFMGETAKILNPE-KTVLMPDLGAG-CSMADMCPPEEFKKLKERHPDAFVV 110 (310)
T ss_pred HhhcceeeHHHHHHHHHhCCCCEEEEeCCchHHHHHHHhCCC-CEEEccCCCCC-CccccccCHHHHHHHHHHCCCCEEE
Confidence 45666666666666666564444555555556666666 777 44543222221 111111 23366778777788887
Q ss_pred ccc
Q 012283 209 TKL 211 (467)
Q Consensus 209 l~~ 211 (467)
.+.
T Consensus 111 ah~ 113 (310)
T TIGR00550 111 TYV 113 (310)
T ss_pred EEC
Confidence 775
No 220
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=20.17 E-value=3e+02 Score=28.77 Aligned_cols=80 Identities=11% Similarity=0.000 Sum_probs=46.8
Q ss_pred ccEEEEEecCCchhHHhHHHHHHHHHHHCCCcEEEEEEcCCchhhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhHhC
Q 012283 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (467)
Q Consensus 122 ~~rILII~~~~IGD~Il~tP~l~aLk~~yP~a~I~ll~~~~~~~l~~~~p~Id~ii~~~~~~~~~~~~~~~~l~~~Lr~~ 201 (467)
.+||||+-.+-+| .++++++++. +.++.++...... ........|+.+.++....-......-.++...++.
T Consensus 2 ~~~ililg~g~~~-----~~~~~~a~~l--G~~~v~~~~~~~~-~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~ 73 (450)
T PRK06111 2 FQKVLIANRGEIA-----VRIIRTCQKL--GIRTVAIYSEADR-DALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKT 73 (450)
T ss_pred cceEEEECCcHHH-----HHHHHHHHHc--CCeEEEEechhhc-cCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHh
Confidence 4788888766554 7778888887 7888777654321 111122356666654321001122233456666778
Q ss_pred CCcEEEEc
Q 012283 202 YYDMVLST 209 (467)
Q Consensus 202 ~yDlvI~l 209 (467)
+.|.++-.
T Consensus 74 ~id~I~p~ 81 (450)
T PRK06111 74 GAEAIHPG 81 (450)
T ss_pred CCCEEEeC
Confidence 89999864
Done!