BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012284
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|B Chain B, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|C Chain C, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|D Chain D, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
Length = 391
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 40/298 (13%)
Query: 138 RLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGST 197
RLL A+Y P+N Y +H+D+ +AE LA F NV V + + A T
Sbjct: 101 RLLRAIYMPQNFYCIHVDR---KAEESFLAAVQGIASCF---DNVFVASQLESVVYASWT 154
Query: 198 SISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDR 257
+ + L+ L +++ NW + INL+ D+P+ +++ L E N ++
Sbjct: 155 RVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK 214
Query: 258 RDSSRMKRIIVDPGLYLSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTD 317
+ + + +VD L + K P LFSGSA +++R +V + +L +
Sbjct: 215 EERWKKRYAVVDGKLTNTG-------IVKAPPPLKTPLFSGSAYFVVTREYVGY-VLENE 266
Query: 318 NLPRTL----------------LMYLSNTPSSFPNYFPTILCNSH--------QFNKTVI 353
N+ + + + + P SFP+ L + + Q+ + +
Sbjct: 267 NIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDV 326
Query: 354 NDSLLYVACDKPSKQN-CTLNSTEFDDMIQSGAIFASQFQFD-DPVLDRIDREILNRS 409
++ Y C ++ C + + M++ +FA++F D DP + E L R
Sbjct: 327 SNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHLRRK 384
>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAK|B Chain B, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAM|A Chain A, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|B Chain B, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|C Chain C, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|D Chain D, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
Length = 391
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 122/298 (40%), Gaps = 40/298 (13%)
Query: 138 RLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGST 197
RLL A+Y P+N Y +H+D+ +AE LA F NV V + + A T
Sbjct: 101 RLLRAIYMPQNFYCIHVDR---KAEESFLAAVQGIASCF---DNVFVASQLESVVYASWT 154
Query: 198 SISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDR 257
+ + L+ L +++ NW + INL D+P+ +++ L E N ++
Sbjct: 155 RVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK 214
Query: 258 RDSSRMKRIIVDPGLYLSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTD 317
+ + + +VD L + K P LFSGSA +++R +V + +L +
Sbjct: 215 EERWKKRYAVVDGKLTNTG-------IVKAPPPLKTPLFSGSAYFVVTREYVGY-VLENE 266
Query: 318 NLPRTL----------------LMYLSNTPSSFPNYFPTILCNSHQFNKTV--------I 353
N+ + + + + P SFP+ L + + + V +
Sbjct: 267 NIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDV 326
Query: 354 NDSLLYVACDKPSKQN-CTLNSTEFDDMIQSGAIFASQFQFD-DPVLDRIDREILNRS 409
++ Y C ++ C + + M++ +FA++F D DP + E L R
Sbjct: 327 SNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHLRRK 384
>pdb|2ZE4|A Chain A, Crystal Structure Of Phospholipase D From Streptomyces
Antibioticus
Length = 509
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 23/72 (31%)
Query: 396 PVLDRIDREILNRSPG-----------------NVVPGGWCLGEPGNNTCSVWGDADILR 438
P LD I+R + + SPG + P GW L PG WGDA +
Sbjct: 7 PHLDAIERSLRDTSPGLEGSVWQRTDGNRLDAPDGDPAGWLLQTPG-----CWGDAGC-K 60
Query: 439 PGPGSRRLENRL 450
G+RRL +++
Sbjct: 61 DRAGTRRLLDKM 72
>pdb|2ZE9|A Chain A, Crystal Structure Of H168a Mutant Of Phospholipase D From
Streptomyces Antibioticus, As A Complex With
Phosphatidylcholine
Length = 509
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 23/72 (31%)
Query: 396 PVLDRIDREILNRSPG-----------------NVVPGGWCLGEPGNNTCSVWGDADILR 438
P LD I+R + + SPG + P GW L PG WGDA +
Sbjct: 7 PHLDAIERSLRDTSPGLEGSVWQRTDGNRLDAPDGDPAGWLLQTPG-----CWGDAGC-K 60
Query: 439 PGPGSRRLENRL 450
G+RRL +++
Sbjct: 61 DRAGTRRLLDKM 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,677,010
Number of Sequences: 62578
Number of extensions: 507706
Number of successful extensions: 952
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 7
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)