Query 012284
Match_columns 467
No_of_seqs 222 out of 759
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 01:00:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 6E-113 1E-117 889.2 38.3 398 61-465 6-421 (421)
2 KOG0799 Branching enzyme [Carb 100.0 3.6E-65 7.9E-70 536.5 21.2 332 115-463 97-439 (439)
3 PF02485 Branch: Core-2/I-Bran 100.0 5.6E-53 1.2E-57 410.1 19.4 237 122-381 1-244 (244)
4 TIGR03469 HonB hopene-associat 93.8 4.4 9.5E-05 42.4 17.9 119 116-240 36-159 (384)
5 cd02525 Succinoglycan_BP_ExoA 88.7 7.4 0.00016 36.5 12.0 100 121-240 1-104 (249)
6 cd06439 CESA_like_1 CESA_like_ 85.1 21 0.00044 34.0 13.1 106 115-242 24-134 (251)
7 TIGR03472 HpnI hopanoid biosyn 84.8 14 0.00031 38.3 12.7 106 119-241 40-150 (373)
8 PRK11204 N-glycosyltransferase 83.0 19 0.00041 37.7 12.8 106 117-240 51-160 (420)
9 cd06437 CESA_CaSu_A2 Cellulose 80.6 15 0.00032 34.8 10.0 103 120-237 1-107 (232)
10 TIGR03111 glyc2_xrt_Gpos1 puta 79.6 34 0.00074 36.5 13.4 106 118-240 47-157 (439)
11 PF08660 Alg14: Oligosaccharid 78.6 18 0.00039 34.0 9.7 123 125-252 3-130 (170)
12 PRK14583 hmsR N-glycosyltransf 78.5 28 0.0006 37.2 12.3 105 118-240 73-181 (444)
13 cd06421 CESA_CelA_like CESA_Ce 78.2 32 0.00069 32.0 11.4 104 120-241 1-108 (234)
14 PRK14716 bacteriophage N4 adso 78.0 30 0.00065 38.2 12.6 102 118-230 64-173 (504)
15 COG1216 Predicted glycosyltran 75.2 25 0.00054 35.4 10.4 104 120-241 3-111 (305)
16 PF00535 Glycos_transf_2: Glyc 75.0 23 0.00049 30.3 8.8 99 125-241 3-105 (169)
17 PF13641 Glyco_tranf_2_3: Glyc 73.7 10 0.00022 35.5 6.6 113 120-250 1-120 (228)
18 PRK10063 putative glycosyl tra 70.4 91 0.002 30.6 12.8 101 120-239 1-106 (248)
19 TIGR01556 rhamnosyltran L-rham 70.2 41 0.00089 33.0 10.4 85 129-229 3-87 (281)
20 PF07521 RMMBL: RNA-metabolisi 68.5 3.1 6.8E-05 30.2 1.5 28 126-155 14-41 (43)
21 cd06434 GT2_HAS Hyaluronan syn 68.4 76 0.0016 29.6 11.4 99 122-240 2-100 (235)
22 cd02520 Glucosylceramide_synth 68.3 57 0.0012 30.0 10.4 104 120-240 1-109 (196)
23 PRK07132 DNA polymerase III su 66.9 42 0.00091 34.5 9.8 97 119-224 16-128 (299)
24 cd04187 DPM1_like_bac Bacteria 64.8 77 0.0017 28.4 10.3 97 125-240 2-103 (181)
25 cd04179 DPM_DPG-synthase_like 64.6 60 0.0013 28.9 9.5 107 125-250 2-113 (185)
26 PRK05454 glucosyltransferase M 64.3 2.2E+02 0.0047 32.9 15.8 125 115-250 119-255 (691)
27 cd04184 GT2_RfbC_Mx_like Myxoc 64.3 1.1E+02 0.0024 27.6 12.7 104 120-239 1-108 (202)
28 PTZ00260 dolichyl-phosphate be 64.0 1.5E+02 0.0033 30.5 13.4 112 116-240 66-188 (333)
29 cd02511 Beta4Glucosyltransfera 63.0 82 0.0018 30.0 10.6 97 121-241 1-98 (229)
30 PRK10073 putative glycosyl tra 61.2 82 0.0018 32.3 10.8 93 119-229 5-99 (328)
31 cd02526 GT2_RfbF_like RfbF is 58.6 95 0.0021 28.9 10.1 96 125-239 2-97 (237)
32 PLN02726 dolichyl-phosphate be 58.4 1.7E+02 0.0037 28.0 12.0 105 117-240 6-116 (243)
33 cd06427 CESA_like_2 CESA_like_ 57.1 1.3E+02 0.0029 28.5 11.0 105 120-240 1-110 (241)
34 PRK07414 cob(I)yrinic acid a,c 56.7 1.3E+02 0.0029 28.7 10.5 106 133-249 36-152 (178)
35 cd04186 GT_2_like_c Subfamily 54.2 1.4E+02 0.003 25.6 10.8 92 125-239 2-96 (166)
36 cd02510 pp-GalNAc-T pp-GalNAc- 53.9 1.2E+02 0.0026 30.1 10.4 99 124-239 2-105 (299)
37 TIGR03030 CelA cellulose synth 49.6 2E+02 0.0043 33.1 12.4 117 117-250 128-263 (713)
38 cd06913 beta3GnTL1_like Beta 1 48.7 1.5E+02 0.0032 27.6 9.6 105 125-240 2-110 (219)
39 PRK05986 cob(I)alamin adenolsy 48.5 2.3E+02 0.0049 27.4 10.8 106 133-249 37-152 (191)
40 cd04185 GT_2_like_b Subfamily 47.6 2.2E+02 0.0047 25.9 10.4 90 125-229 2-93 (202)
41 PRK11234 nfrB bacteriophage N4 46.2 1.5E+02 0.0033 34.3 10.8 102 117-229 60-169 (727)
42 cd04192 GT_2_like_e Subfamily 43.8 2.6E+02 0.0056 25.6 11.9 99 125-240 2-105 (229)
43 cd06442 DPM1_like DPM1_like re 42.3 2.1E+02 0.0046 26.3 9.5 97 125-240 2-101 (224)
44 PF02572 CobA_CobO_BtuR: ATP:c 41.1 1.7E+02 0.0036 27.8 8.5 106 133-249 18-133 (172)
45 cd06423 CESA_like CESA_like is 37.5 2.5E+02 0.0054 23.6 9.0 96 125-238 2-99 (180)
46 cd04196 GT_2_like_d Subfamily 36.7 3.2E+02 0.0069 24.6 11.1 98 124-240 2-102 (214)
47 PRK10714 undecaprenyl phosphat 36.6 4.6E+02 0.01 26.8 11.8 106 119-242 5-115 (325)
48 PRK05917 DNA polymerase III su 36.1 1.6E+02 0.0035 30.2 8.2 14 119-132 17-30 (290)
49 PF07747 MTH865: MTH865-like f 35.8 17 0.00037 30.0 0.8 19 222-240 11-29 (75)
50 PF12273 RCR: Chitin synthesis 35.3 22 0.00048 31.7 1.6 11 64-74 1-11 (130)
51 cd00761 Glyco_tranf_GTA_type G 35.2 2.5E+02 0.0054 22.9 9.7 89 125-230 2-92 (156)
52 PRK05818 DNA polymerase III su 33.8 1.8E+02 0.0039 29.5 7.9 14 119-132 5-18 (261)
53 PRK15489 nfrB bacteriophage N4 33.6 3.1E+02 0.0067 31.8 10.6 108 118-239 69-187 (703)
54 COG2109 BtuR ATP:corrinoid ade 32.8 4.8E+02 0.01 25.5 10.9 106 133-249 43-159 (198)
55 cd04195 GT2_AmsE_like GT2_AmsE 31.7 3.9E+02 0.0083 24.1 10.7 89 124-230 2-95 (201)
56 cd04188 DPG_synthase DPG_synth 31.2 2.3E+02 0.005 26.1 7.9 97 125-240 2-105 (211)
57 KOG3339 Predicted glycosyltran 31.2 2.9E+02 0.0063 27.0 8.4 113 122-240 40-158 (211)
58 PRK07276 DNA polymerase III su 30.5 2.8E+02 0.006 28.5 8.8 115 119-252 22-141 (290)
59 PRK08058 DNA polymerase III su 29.3 3.7E+02 0.0081 27.6 9.7 26 119-144 26-53 (329)
60 PLN02917 CMP-KDO synthetase 27.0 6.2E+02 0.013 25.7 10.7 26 215-241 135-160 (293)
61 cd06420 GT2_Chondriotin_Pol_N 26.5 4.5E+02 0.0097 23.1 11.4 100 125-241 2-103 (182)
62 cd06438 EpsO_like EpsO protein 26.0 4.9E+02 0.011 23.4 12.0 99 125-240 2-104 (183)
63 COG4746 Uncharacterized protei 25.8 34 0.00074 28.4 1.0 19 222-240 16-34 (80)
64 cd06433 GT_2_WfgS_like WfgS an 25.7 4.6E+02 0.01 23.0 10.0 87 124-230 2-90 (202)
65 cd02522 GT_2_like_a GT_2_like_ 25.2 4.9E+02 0.011 23.7 8.9 92 123-240 2-95 (221)
66 COG3618 Predicted metal-depend 25.2 3.2E+02 0.0069 28.1 8.0 91 132-233 145-243 (279)
67 PRK06581 DNA polymerase III su 24.2 6.6E+02 0.014 25.6 9.9 13 118-130 12-24 (263)
68 PF07172 GRP: Glycine rich pro 24.1 74 0.0016 27.3 2.8 17 63-79 3-19 (95)
69 cd02537 GT8_Glycogenin Glycoge 23.5 6.5E+02 0.014 24.4 9.7 108 122-238 1-112 (240)
70 PRK05707 DNA polymerase III su 23.0 6.4E+02 0.014 26.1 10.0 26 118-143 19-46 (328)
71 PRK07993 DNA polymerase III su 23.0 3.8E+02 0.0081 27.9 8.3 98 119-225 22-147 (334)
72 cd06435 CESA_NdvC_like NdvC_li 22.8 6.2E+02 0.013 23.5 11.5 104 124-242 2-109 (236)
73 PRK06090 DNA polymerase III su 22.7 5.6E+02 0.012 26.6 9.5 15 118-132 22-36 (319)
74 cd02514 GT13_GLCNAC-TI GT13_GL 20.7 7.8E+02 0.017 25.8 10.1 97 122-230 2-112 (334)
75 PRK13915 putative glucosyl-3-p 20.3 9.2E+02 0.02 24.5 10.9 116 118-249 29-150 (306)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=6e-113 Score=889.23 Aligned_cols=398 Identities=44% Similarity=0.785 Sum_probs=366.7
Q ss_pred ccchHH--HHHHHHHHHHHHHHhh----cCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEE
Q 012284 61 KATRSV--LLTTLFFSLLFLVSFY----STSSS-----------SRRSIDSQTQSDPFLFPTRPAFPSKIPSHPAPPSLA 123 (467)
Q Consensus 61 ~~~~~~--~~~~~~~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~kiA 123 (467)
++|||+ ++++++++++|+++++ .++.+ ...+++.+.|+|+++.+.+. +.+.++.|||||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~A 81 (421)
T PLN03183 6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPH----PPPVQDKLPRFA 81 (421)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCC----CCCCCCCCCeEE
Confidence 789999 8888998877655333 11111 01245666788988876542 123456789999
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHHHH
Q 012284 124 YLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTL 203 (467)
Q Consensus 124 YLIlahk~d~~~l~RLL~aLyhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~AtL 203 (467)
|||+||+||.+|++|||++||||+|+||||+|+||+..++.+++..|+.+|++.+++||+|+++++.|+|||+|||+|||
T Consensus 82 YLI~~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL 161 (421)
T PLN03183 82 YLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTL 161 (421)
T ss_pred EEEEecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHH
Confidence 99999988999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhcCCCCCceeecccCCCCccccceeeeeeCCCcccccCCCccee
Q 012284 204 HGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQNPMFYV 283 (467)
Q Consensus 204 ~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~~~rg~NFIe~~s~~gwk~~~r~~~~i~d~glyl~~k~~~~~~ 283 (467)
+||+.|++.+.+|||||||||+||||+||+||++.|..+|+|+|||++++..+|++.+|+++++++||+|..+++.++|.
T Consensus 162 ~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~ 241 (421)
T PLN03183 162 HACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWV 241 (421)
T ss_pred HHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhh
Confidence 99999999889999999999999999999998887777899999999998899999999999999999998888888999
Q ss_pred cccCCCCCCceeecccceeeecHHHHHHhhhccCCcHHHHHHhhCCCCCCCCchHHHHhhcCccCCcccccCceEEEeCC
Q 012284 284 SQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKTVINDSLLYVACD 363 (467)
Q Consensus 284 ~~kR~lP~~~~lf~GS~W~~LSR~fveyll~~~dnlpr~ll~yfk~t~~pDE~fFqTVl~NS~~F~~t~vn~nLRyI~W~ 363 (467)
.++|.+|.++++|+||+||+|||+||+||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+|||||+|+
T Consensus 242 ~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~ 321 (421)
T PLN03183 242 TPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWD 321 (421)
T ss_pred hhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcc-ccChHHHHHHhhcCceEEeccCCChHHHHHHHHHHhccCCCCCcCCccccCCCCCCCccccCCCCcccCCCc
Q 012284 364 KPSKQNC-TLNSTEFDDMIQSGAIFASQFQFDDPVLDRIDREILNRSPGNVVPGGWCLGEPGNNTCSVWGDADILRPGPG 442 (467)
Q Consensus 364 ~~~k~hP-~Lt~~D~~~L~~S~alFARKF~~D~~vLd~ID~~ll~r~~~~~~pg~W~~~~~~~~~c~~~g~~~~~~pg~~ 442 (467)
+++++|| +|+.+||++|++|+++|||||+.|++|||+||++|++|..++++|||||.| .||||+|||+++||||||
T Consensus 322 ~~~~~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~---~~~c~~~~~~~~~~p~~~ 398 (421)
T PLN03183 322 NPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG---KPKCSRVGDPAKIKPGPG 398 (421)
T ss_pred CCCCCCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC---CCcccccCCcCccCCCcH
Confidence 9988899 999999999999999999999999999999999999999999999999987 579999999999999999
Q ss_pred hHHHHHHHHHHccCCCCCCCCcc
Q 012284 443 SRRLENRLIEMFSGGNFRSQQCI 465 (467)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~c~ 465 (467)
|+||++||.+||++++||++||+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~c~ 421 (421)
T PLN03183 399 AQRLKGLVSRLVLEAKLGQNQCK 421 (421)
T ss_pred HHHHHHHHHHHhchhccccccCC
Confidence 99999999999999999999996
No 2
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-65 Score=536.54 Aligned_cols=332 Identities=39% Similarity=0.629 Sum_probs=303.3
Q ss_pred CCCCCC-cEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceecc
Q 012284 115 SHPAPP-SLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYP 193 (467)
Q Consensus 115 ~~~~p~-kiAYLIlahk~d~~~l~RLL~aLyhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~W 193 (467)
..+.++ .+||+.++|+ |.++++|+|+|+|||+|+||||||++|++++|..++. ++.|++||+|++++..|+|
T Consensus 97 s~~~~~~~~a~~~~v~k-d~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~------L~~cf~NV~v~~k~~~v~~ 169 (439)
T KOG0799|consen 97 SKELKPFPAAFLRVVYK-DYEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQ------LASCFPNVIVLPKRESVTY 169 (439)
T ss_pred cccccccceEEEEeecc-cHHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHH------HHhcCCceEEeccccceec
Confidence 445555 4555555565 9999999999999999999999999999999977664 4579999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhcCCCCCceeecccCCCCccccceeeeeeCCCcc
Q 012284 194 AGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLY 273 (467)
Q Consensus 194 gG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~~~rg~NFIe~~s~~gwk~~~r~~~~i~d~gly 273 (467)
||+|+++|+|+||+.|++...+|||||||||+|||||||+||+++|+.+ +|.|||++++..+|++.++.++++.+++ |
T Consensus 170 ~G~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L-~g~N~i~~~~~~~~~~~~~~k~~~~~~~-~ 247 (439)
T KOG0799|consen 170 GGHSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL-RGANFVEHTSEIGWKLNRKAKWDIIDLK-Y 247 (439)
T ss_pred CCchhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc-CCcccccCcccccHHHhcccCCcccccc-h
Confidence 9999999999999999999889999999999999999999999999987 6999999999999999999998899998 6
Q ss_pred cccCCCcceecccCCCCCCceeecccceeeecHHHHHHhhhccCCcHHHHHHhhCCCCCCCCchHHHHhhcCccCCcccc
Q 012284 274 LSEQNPMFYVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLMYLSNTPSSFPNYFPTILCNSHQFNKTVI 353 (467)
Q Consensus 274 l~~k~~~~~~~~kR~lP~~~~lf~GS~W~~LSR~fveyll~~~dnlpr~ll~yfk~t~~pDE~fFqTVl~NS~~F~~t~v 353 (467)
+.+++.++|.. +|.+|++|+||.|++|||+||+||+.+ ++|+++++||+++++|||+||||++||+ |+.+.+
T Consensus 248 ~~~~s~~~~~~----lp~~~ki~~Gs~~~~LsR~fv~y~i~~--~~~~~ll~~~~~t~~~dE~f~~Tl~~n~--~~~~g~ 319 (439)
T KOG0799|consen 248 FRNKSPLPWVI----LPTALKLFKGSAWVSLSRAFVEYLISG--NLPRTLLMYYNNTYSPDEGFFHTLQCNP--FGMPGV 319 (439)
T ss_pred heecCCCcccc----CCCceEEEecceeEEEeHHHHHHHhcC--ccHHHHHHHHhCccCcchhhhHhhhccc--cCCCCc
Confidence 66667777755 999999999999999999999999985 8899999999999999999999999998 899999
Q ss_pred cCc--eEEEeCCC----CCCCcc-ccChHHHHHHhhcCc-eEEeccC--CChHHHHHHHHHHhccCCCCCcCCccccCCC
Q 012284 354 NDS--LLYVACDK----PSKQNC-TLNSTEFDDMIQSGA-IFASQFQ--FDDPVLDRIDREILNRSPGNVVPGGWCLGEP 423 (467)
Q Consensus 354 n~n--LRyI~W~~----~~k~hP-~Lt~~D~~~L~~S~a-lFARKF~--~D~~vLd~ID~~ll~r~~~~~~pg~W~~~~~ 423 (467)
++| +||+.|+. ++++|| .++..|+..|..++. .|||||. .++++++.+|.+++++..+..++|+||..+.
T Consensus 320 ~~~~~lr~~~W~~~~~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k~~~l~~nkvl~~~d~~~i~c~~~~~~~~~~~~~~~ 399 (439)
T KOG0799|consen 320 FNDECLRYTNWDRKDVDPPKQHCHSLTVRDFICVFGSGDLPFARKFPHLVANKVLDKFDPELIGCLAEFNRTGGWCDHSL 399 (439)
T ss_pred ccchhhcceecccccccccccCCcccccccceeeeecchhHHHhhCchhhcccchhccCHHHHhhhhhccCccccccccc
Confidence 999 99999998 678899 999999999999999 8999999 4899999999999999888788999993333
Q ss_pred CCCCccccCCCCcccCCCchHHHHHHHHHHccCCCCCCCC
Q 012284 424 GNNTCSVWGDADILRPGPGSRRLENRLIEMFSGGNFRSQQ 463 (467)
Q Consensus 424 ~~~~c~~~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ 463 (467)
..++|+..++...+.|||++.|++.++..++..++|+..|
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
T KOG0799|consen 400 RTLPCSELGDAVKLTPGPGAPRLEELCTPLLSHENFRLYQ 439 (439)
T ss_pred ccccccccccceeeccCCcchhHHhhhhccccchhhhccC
Confidence 7899999999999999999999999999999999998876
No 3
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=5.6e-53 Score=410.07 Aligned_cols=237 Identities=29% Similarity=0.444 Sum_probs=160.4
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHH
Q 012284 122 LAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISS 201 (467)
Q Consensus 122 iAYLIlahk~d~~~l~RLL~aLyhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~A 201 (467)
|||||+||+++++++++|++++|+|+|+||||||+|++...+.+++.+. .+++||++++++..|.|||+|||+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~~------~~~~nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKLI------SCFPNVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHHH------CT-TTEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHhc------ccCCceeecccccccccCCccHHHH
Confidence 7999999999999999999999999999999999999988888777643 5899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhcCCCCCceeecccCCCCccccceeeeeeCCCcccccCCCcc
Q 012284 202 TLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHTSYLDRRDSSRMKRIIVDPGLYLSEQNPMF 281 (467)
Q Consensus 202 tL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~~~rg~NFIe~~s~~gwk~~~r~~~~i~d~glyl~~k~~~~ 281 (467)
||.||+.|++.+.+|||||||||+||||+|+++|.++|+..+++.+|+++....+++...|+.+...++..+.
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~------- 147 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPF------- 147 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEE-------
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccc-------
Confidence 9999999999777999999999999999999999999998667789999876555433344433322222111
Q ss_pred eecccCCCCCCceeecccceeeecHHHHHHhhhccCCcHHHHHH-hhCCCCCCCCchHHHHhhcCccCCcccccCceEEE
Q 012284 282 YVSQKRQLPNAFRLFSGSAVVILSRNFVEFCILGTDNLPRTLLM-YLSNTPSSFPNYFPTILCNSHQFNKTVINDSLLYV 360 (467)
Q Consensus 282 ~~~~kR~lP~~~~lf~GS~W~~LSR~fveyll~~~dnlpr~ll~-yfk~t~~pDE~fFqTVl~NS~~F~~t~vn~nLRyI 360 (467)
..++ ++|+|||||+|||+||+||+. |......++ |++++++|||.|||||++|++.|+++++++++|||
T Consensus 148 --~~~~------~~~~GSqW~~Ltr~~v~~il~--~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i 217 (244)
T PF02485_consen 148 --FRKR------TLYKGSQWFSLTRDFVEYILD--DPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYI 217 (244)
T ss_dssp --EEEE--------EEE-S--EEEHHHHHHHHH---HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE
T ss_pred --cccc------cccccceeeEeeHHHHHHhhh--hHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEE
Confidence 1111 899999999999999999995 444444444 44599999999999999999879999999999999
Q ss_pred eCCCCCCCcc------ccChHHHHHHh
Q 012284 361 ACDKPSKQNC------TLNSTEFDDMI 381 (467)
Q Consensus 361 ~W~~~~k~hP------~Lt~~D~~~L~ 381 (467)
+|++..++|| .++++|+++|.
T Consensus 218 ~W~~~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 218 DWSRRGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp -BTGT-SS---SSEEEE--GGGHHHH-
T ss_pred ECCCCCCCCCCeeeeeeeCHHHHHhhC
Confidence 9995556776 56788888873
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.79 E-value=4.4 Score=42.41 Aligned_cols=119 Identities=12% Similarity=0.088 Sum_probs=73.9
Q ss_pred CCCCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCcc-cee
Q 012284 116 HPAPPSLAYLISGSAGDAARIVRLLHAVY---HPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKA-DFS 191 (467)
Q Consensus 116 ~~~p~kiAYLIlahk~d~~~l~RLL~aLy---hP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr-~~V 191 (467)
++..|++..+|-+++ ..+.+.++|+.|. .|.+.=+|-||..+.+.-.+.++++.+..| ..++++++... ...
T Consensus 36 ~~~~p~VSVIIpa~N-e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~---~~~~i~vi~~~~~~~ 111 (384)
T TIGR03469 36 PEAWPAVVAVVPARN-EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG---RGDRLTVVSGQPLPP 111 (384)
T ss_pred CCCCCCEEEEEecCC-cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC---CCCcEEEecCCCCCC
Confidence 345678999999998 7799999999995 343445678888877665544544432221 22378888632 234
Q ss_pred ccCCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccc-hHHHHHHHh
Q 012284 192 YPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIK-QDDLLHILS 240 (467)
Q Consensus 192 ~WgG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT-~ddI~~~ls 240 (467)
.|+|- ..|.-.+++.+-+...+-||++.+.+.+.+-.. ..++.+.+.
T Consensus 112 g~~Gk--~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~ 159 (384)
T TIGR03469 112 GWSGK--LWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARAR 159 (384)
T ss_pred CCcch--HHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 55553 344445566654433447899999998876322 244444444
No 5
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=88.68 E-value=7.4 Score=36.55 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=62.2
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHc---CC-CCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCc
Q 012284 121 SLAYLISGSAGDAARIVRLLHAVY---HP-KNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGS 196 (467)
Q Consensus 121 kiAYLIlahk~d~~~l~RLL~aLy---hP-~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~ 196 (467)
+++.+|.+++ +.+.+.++|..+. .| .+.=+|=+|..+++.....++.+. ...+.|+++..... |.
T Consensus 1 ~~sIiip~~n-~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~------~~~~~v~~i~~~~~----~~ 69 (249)
T cd02525 1 FVSIIIPVRN-EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA------AKDPRIRLIDNPKR----IQ 69 (249)
T ss_pred CEEEEEEcCC-chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH------hcCCeEEEEeCCCC----Cc
Confidence 4678888888 7889999998884 22 343356667666665444454432 34678888865421 21
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHh
Q 012284 197 TSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 197 S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls 240 (467)
..|--.+++.+ ..||++.|.+.|.+ +.+.|...+.
T Consensus 70 --~~a~N~g~~~a-----~~d~v~~lD~D~~~--~~~~l~~~~~ 104 (249)
T cd02525 70 --SAGLNIGIRNS-----RGDIIIRVDAHAVY--PKDYILELVE 104 (249)
T ss_pred --hHHHHHHHHHh-----CCCEEEEECCCccC--CHHHHHHHHH
Confidence 12333344433 57999999999986 5555555553
No 6
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=85.14 E-value=21 Score=34.00 Aligned_cols=106 Identities=11% Similarity=0.121 Sum_probs=64.2
Q ss_pred CCCCCCcEEEEEEecCCCHHHHHHHHHHHc---CCC--CeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccc
Q 012284 115 SHPAPPSLAYLISGSAGDAARIVRLLHAVY---HPK--NQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKAD 189 (467)
Q Consensus 115 ~~~~p~kiAYLIlahk~d~~~l~RLL~aLy---hP~--n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~ 189 (467)
.....++++.+|.+|+ +.+.+.++|+.+. .|. -.++|..|. +++...+.++.+. .. +|.++....
T Consensus 24 ~~~~~~~isVvip~~n-~~~~l~~~l~si~~q~~~~~~~eiivvdd~-s~d~t~~~~~~~~-------~~-~v~~i~~~~ 93 (251)
T cd06439 24 DPAYLPTVTIIIPAYN-EEAVIEAKLENLLALDYPRDRLEIIVVSDG-STDGTAEIAREYA-------DK-GVKLLRFPE 93 (251)
T ss_pred CCCCCCEEEEEEecCC-cHHHHHHHHHHHHhCcCCCCcEEEEEEECC-CCccHHHHHHHHh-------hC-cEEEEEcCC
Confidence 3455689999999998 7788999888874 233 245555555 4444333333321 22 788775322
Q ss_pred eeccCCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhcC
Q 012284 190 FSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYM 242 (467)
Q Consensus 190 ~V~WgG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~~ 242 (467)
. .| ...|--.+++.+ .-||++.+.+.+.|- .+.|.+.++.+
T Consensus 94 ~---~g--~~~a~n~gi~~a-----~~d~i~~lD~D~~~~--~~~l~~l~~~~ 134 (251)
T cd06439 94 R---RG--KAAALNRALALA-----TGEIVVFTDANALLD--PDALRLLVRHF 134 (251)
T ss_pred C---CC--hHHHHHHHHHHc-----CCCEEEEEccccCcC--HHHHHHHHHHh
Confidence 1 23 344444555543 129999999999995 56666665543
No 7
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=84.82 E-value=14 Score=38.34 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=61.4
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCC--eEEeCccceecc
Q 012284 119 PPSLAYLISGSAGDAARIVRLLHAVY---HPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQN--VDVIGKADFSYP 193 (467)
Q Consensus 119 p~kiAYLIlahk~d~~~l~RLL~aLy---hP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~N--V~vv~kr~~V~W 193 (467)
.|++..+|-+++ ..+.+.+.|+++- .|+-.++| +|..+++.-.+-++++. ..+++ |+++.......|
T Consensus 40 ~p~VSViiP~~n-ee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~------~~~p~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 40 WPPVSVLKPLHG-DEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLR------ADFPDADIDLVIDARRHGP 111 (373)
T ss_pred CCCeEEEEECCC-CChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHH------HhCCCCceEEEECCCCCCC
Confidence 467999999998 6678888888883 35544444 66666554444444433 24565 555643333233
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhc
Q 012284 194 AGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSY 241 (467)
Q Consensus 194 gG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~ 241 (467)
.+ -+.+..++++. .+.||++.+-+.+.| +.+-|.+....
T Consensus 112 ~~--K~~~l~~~~~~-----a~ge~i~~~DaD~~~--~p~~L~~lv~~ 150 (373)
T TIGR03472 112 NR--KVSNLINMLPH-----ARHDILVIADSDISV--GPDYLRQVVAP 150 (373)
T ss_pred Ch--HHHHHHHHHHh-----ccCCEEEEECCCCCc--ChhHHHHHHHH
Confidence 22 23333333332 356888888888776 55555555443
No 8
>PRK11204 N-glycosyltransferase; Provisional
Probab=83.03 E-value=19 Score=37.68 Aligned_cols=106 Identities=8% Similarity=0.136 Sum_probs=64.4
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceecc
Q 012284 117 PAPPSLAYLISGSAGDAARIVRLLHAVY---HPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYP 193 (467)
Q Consensus 117 ~~p~kiAYLIlahk~d~~~l~RLL~aLy---hP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~W 193 (467)
+..|+++.+|-+|+ +.+.+.+.++++. .|+..+ |=+|..+++...+.++++. ..+++|+++.... .
T Consensus 51 ~~~p~vsViIp~yn-e~~~i~~~l~sl~~q~yp~~ei-iVvdD~s~d~t~~~l~~~~------~~~~~v~~i~~~~---n 119 (420)
T PRK11204 51 KEYPGVSILVPCYN-EGENVEETISHLLALRYPNYEV-IAINDGSSDNTGEILDRLA------AQIPRLRVIHLAE---N 119 (420)
T ss_pred CCCCCEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEE-EEEECCCCccHHHHHHHHH------HhCCcEEEEEcCC---C
Confidence 34578999999998 7788999888874 454344 5566666655554454432 3567898886322 1
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccc-hHHHHHHHh
Q 012284 194 AGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIK-QDDLLHILS 240 (467)
Q Consensus 194 gG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT-~ddI~~~ls 240 (467)
+| ...| +..+++. .+.||++.+-+.+.|-.. ..++.+.|.
T Consensus 120 ~G--ka~a----ln~g~~~-a~~d~i~~lDaD~~~~~d~L~~l~~~~~ 160 (420)
T PRK11204 120 QG--KANA----LNTGAAA-ARSEYLVCIDGDALLDPDAAAYMVEHFL 160 (420)
T ss_pred CC--HHHH----HHHHHHH-cCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 33 2222 2222321 357999999999877332 234455553
No 9
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=80.60 E-value=15 Score=34.78 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=57.4
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CC-CeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCC
Q 012284 120 PSLAYLISGSAGDAARIVRLLHAVYH---PK-NQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAG 195 (467)
Q Consensus 120 ~kiAYLIlahk~d~~~l~RLL~aLyh---P~-n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG 195 (467)
+++..+|.+|+ ..+.|.++|++|.. |. ..-+|=+|. +++.....++++.+..+ ....+|.++...... |
T Consensus 1 p~vSViIp~yN-e~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~--~~~~~i~~~~~~~~~---G 73 (232)
T cd06437 1 PMVTVQLPVFN-EKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA--AQGVNIKHVRRADRT---G 73 (232)
T ss_pred CceEEEEecCC-cHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh--hcCCceEEEECCCCC---C
Confidence 36888999998 88999999999843 33 334456786 55554444444332111 123456655432222 2
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHH
Q 012284 196 STSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLH 237 (467)
Q Consensus 196 ~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~ 237 (467)
+. ..|.-.+++. ...||++.+-+.+++ ..+-|.+
T Consensus 74 ~k-~~a~n~g~~~-----a~~~~i~~~DaD~~~--~~~~l~~ 107 (232)
T cd06437 74 YK-AGALAEGMKV-----AKGEYVAIFDADFVP--PPDFLQK 107 (232)
T ss_pred Cc-hHHHHHHHHh-----CCCCEEEEEcCCCCC--ChHHHHH
Confidence 21 1111122222 256899999998886 3444444
No 10
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=79.61 E-value=34 Score=36.54 Aligned_cols=106 Identities=6% Similarity=0.103 Sum_probs=63.0
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHc---CCCC-eEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceecc
Q 012284 118 APPSLAYLISGSAGDAARIVRLLHAVY---HPKN-QYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYP 193 (467)
Q Consensus 118 ~p~kiAYLIlahk~d~~~l~RLL~aLy---hP~n-~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~W 193 (467)
..|+++.+|-+|+ ..+.+.++|+++. .|.. .-+|=+|..+.++-.+.++++. ..++++.++.... .
T Consensus 47 ~~P~vsVIIP~yN-e~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~------~~~~~v~v~~~~~--~- 116 (439)
T TIGR03111 47 KLPDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ------NEFPGLSLRYMNS--D- 116 (439)
T ss_pred CCCCEEEEEEeCC-ChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH------HhCCCeEEEEeCC--C-
Confidence 4578999999999 7799999999884 3443 3356778777666444444332 3467777643211 1
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccc-hHHHHHHHh
Q 012284 194 AGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIK-QDDLLHILS 240 (467)
Q Consensus 194 gG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT-~ddI~~~ls 240 (467)
+|.+ .++..+++. .+-||++.+-+.+.|-.. ..++...|.
T Consensus 117 ~Gka------~AlN~gl~~-s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 117 QGKA------KALNAAIYN-SIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred CCHH------HHHHHHHHH-ccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 3432 122222222 234789999999988332 244455554
No 11
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=78.60 E-value=18 Score=34.01 Aligned_cols=123 Identities=18% Similarity=0.282 Sum_probs=73.1
Q ss_pred EEEecCCCHHHHHHHHHHH----cCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHH
Q 012284 125 LISGSAGDAARIVRLLHAV----YHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSIS 200 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aL----yhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~ 200 (467)
++++++|-..+|.+|++++ +.++.++ |--+.+.+...-.++.+......-..+.+.++-+.+. -.+.=++++.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~i-vt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~--~~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYI-VTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQS--YLTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEE-EEcCCcccHHHHHHHHHhccccceeeccceEEEechh--hHhhHHHHHH
Confidence 4667777889999999999 6544444 3333333322222232211100001233444444332 1334577888
Q ss_pred HHHHHHHHHHhcCCCCcE-EEEecCCceeccchHHHHHHHhcCCCCCceeecc
Q 012284 201 STLHGASILLKLSKNWDW-FINLNAADYPLIKQDDLLHILSYMPKELNFVNHT 252 (467)
Q Consensus 201 AtL~~~~~lL~~~~~wDy-finLSgsDyPLkT~ddI~~~ls~~~rg~NFIe~~ 252 (467)
+.+.++..+.+..+ |- +-|=+|.++|+.=...+.++|--.....-|||..
T Consensus 80 ~~~~~~~il~r~rP--dvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 80 AFLQSLRILRRERP--DVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HHHHHHHHHHHhCC--CEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 88899999987543 44 4466789999999999998886444445777764
No 12
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=78.48 E-value=28 Score=37.20 Aligned_cols=105 Identities=10% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccC
Q 012284 118 APPSLAYLISGSAGDAARIVRLLHAVY---HPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPA 194 (467)
Q Consensus 118 ~p~kiAYLIlahk~d~~~l~RLL~aLy---hP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wg 194 (467)
..|+++.+|-+|+ +.+.+.++|+++- .|+-. +|-+|..+++.-.+.++++. ..+++|+++... ..+
T Consensus 73 ~~p~vsViIP~yN-E~~~i~~~l~sll~q~yp~~e-IivVdDgs~D~t~~~~~~~~------~~~~~v~vv~~~---~n~ 141 (444)
T PRK14583 73 GHPLVSILVPCFN-EGLNARETIHAALAQTYTNIE-VIAINDGSSDDTAQVLDALL------AEDPRLRVIHLA---HNQ 141 (444)
T ss_pred CCCcEEEEEEeCC-CHHHHHHHHHHHHcCCCCCeE-EEEEECCCCccHHHHHHHHH------HhCCCEEEEEeC---CCC
Confidence 3578999999998 7778888888873 35434 56677666665555554443 356788887521 223
Q ss_pred CchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccc-hHHHHHHHh
Q 012284 195 GSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIK-QDDLLHILS 240 (467)
Q Consensus 195 G~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT-~ddI~~~ls 240 (467)
|- . .++...++. .+.||++.+.+.+.|-.. ..++...|.
T Consensus 142 Gk--a----~AlN~gl~~-a~~d~iv~lDAD~~~~~d~L~~lv~~~~ 181 (444)
T PRK14583 142 GK--A----IALRMGAAA-ARSEYLVCIDGDALLDKNAVPYLVAPLI 181 (444)
T ss_pred CH--H----HHHHHHHHh-CCCCEEEEECCCCCcCHHHHHHHHHHHH
Confidence 42 1 223333332 467999999999987432 233444443
No 13
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=78.18 E-value=32 Score=32.01 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=58.0
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CC-CeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCC
Q 012284 120 PSLAYLISGSAGDAARIVRLLHAVYH---PK-NQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAG 195 (467)
Q Consensus 120 ~kiAYLIlahk~d~~~l~RLL~aLyh---P~-n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG 195 (467)
|++..+|-+++.+.+.+++.|+.+-. |. +.=+|=+|-.+++.-.+.++.+. ...++.++... ..+|+
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~-------~~~~~~~~~~~--~~~~~ 71 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELG-------VEYGYRYLTRP--DNRHA 71 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhh-------cccCceEEEeC--CCCCC
Confidence 36788888998556788888888832 33 13344577766655444443321 11244554322 23343
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhc
Q 012284 196 STSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSY 241 (467)
Q Consensus 196 ~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~ 241 (467)
..- +.-.+++.+ ..||++.|.+.|++ ..+.|...++.
T Consensus 72 ~~~--~~n~~~~~a-----~~d~i~~lD~D~~~--~~~~l~~l~~~ 108 (234)
T cd06421 72 KAG--NLNNALAHT-----TGDFVAILDADHVP--TPDFLRRTLGY 108 (234)
T ss_pred cHH--HHHHHHHhC-----CCCEEEEEccccCc--CccHHHHHHHH
Confidence 221 112333322 56899999999988 34555555543
No 14
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=78.03 E-value=30 Score=38.15 Aligned_cols=102 Identities=9% Similarity=0.010 Sum_probs=59.9
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHH----HcCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceecc
Q 012284 118 APPSLAYLISGSAGDAARIVRLLHA----VYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYP 193 (467)
Q Consensus 118 ~p~kiAYLIlahk~d~~~l~RLL~a----LyhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~W 193 (467)
+.++++.+|-+|+ +.+.+.++|+. ++.|+-.++|=.|. +++.-...++... ..++||+++..+. -
T Consensus 64 ~~p~vaIlIPA~N-E~~vI~~~l~s~L~~ldY~~~eIiVv~d~-ndd~T~~~v~~l~------~~~p~v~~vv~~~---~ 132 (504)
T PRK14716 64 PEKRIAIFVPAWR-EADVIGRMLEHNLATLDYENYRIFVGTYP-NDPATLREVDRLA------ARYPRVHLVIVPH---D 132 (504)
T ss_pred CCCceEEEEeccC-chhHHHHHHHHHHHcCCCCCeEEEEEECC-CChhHHHHHHHHH------HHCCCeEEEEeCC---C
Confidence 3688999999998 77777777775 33354344444443 3333233343322 4688888654221 1
Q ss_pred CCchHHHHHHHHHHHHHh----cCCCCcEEEEecCCceecc
Q 012284 194 AGSTSISSTLHGASILLK----LSKNWDWFINLNAADYPLI 230 (467)
Q Consensus 194 gG~S~V~AtL~~~~~lL~----~~~~wDyfinLSgsDyPLk 230 (467)
|+.+-..|--.+++.+.. .+.++|+++.+-+.|.|=.
T Consensus 133 gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~P 173 (504)
T PRK14716 133 GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHP 173 (504)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCc
Confidence 334445554455554422 2346899999999888543
No 15
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=75.23 E-value=25 Score=35.43 Aligned_cols=104 Identities=16% Similarity=0.229 Sum_probs=66.7
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCC--CCeEEEEEcCCCChhHHHHHHHhhhccccccc-CCCeEEeCccceeccCCc
Q 012284 120 PSLAYLISGSAGDAARIVRLLHAVYHP--KNQYLLHLDQSAPQAERDSLAVTIESVPVFRA-AQNVDVIGKADFSYPAGS 196 (467)
Q Consensus 120 ~kiAYLIlahk~d~~~l~RLL~aLyhP--~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~-~~NV~vv~kr~~V~WgG~ 196 (467)
++++.+|..|. ..+.+...|..|..- ...++|=+|-.+.+.....++. . +++|.++.......|+|-
T Consensus 3 ~~i~~iiv~yn-~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~---------~~~~~v~~i~~~~NlG~agg 72 (305)
T COG1216 3 PKISIIIVTYN-RGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKA---------RFFPNVRLIENGENLGFAGG 72 (305)
T ss_pred cceEEEEEecC-CHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHh---------hcCCcEEEEEcCCCccchhh
Confidence 67888888998 888888888888532 2333335688777776655542 3 799999987666666554
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEecCCceec--cchHHHHHHHhc
Q 012284 197 TSISSTLHGASILLKLSKNWDWFINLNAADYPL--IKQDDLLHILSY 241 (467)
Q Consensus 197 S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPL--kT~ddI~~~ls~ 241 (467)
-. .+++.++..+.+ |+++| ..|-++ -..+++.+.++.
T Consensus 73 ~n-----~g~~~a~~~~~~--~~l~L-N~D~~~~~~~l~~ll~~~~~ 111 (305)
T COG1216 73 FN-----RGIKYALAKGDD--YVLLL-NPDTVVEPDLLEELLKAAEE 111 (305)
T ss_pred hh-----HHHHHHhcCCCc--EEEEE-cCCeeeChhHHHHHHHHHHh
Confidence 43 688888864322 45555 456322 334455555554
No 16
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=74.97 E-value=23 Score=30.31 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=62.6
Q ss_pred EEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHH
Q 012284 125 LISGSAGDAARIVRLLHAVY---HPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISS 201 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLy---hP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~A 201 (467)
+|.+++ ..+.|.++|..|- .+...+ |=+|-.+++...+.++.+.+ ...+|+++..... ...-.+
T Consensus 3 vip~~n-~~~~l~~~l~sl~~q~~~~~ei-ivvdd~s~d~~~~~~~~~~~------~~~~i~~i~~~~n-----~g~~~~ 69 (169)
T PF00535_consen 3 VIPTYN-EAEYLERTLESLLKQTDPDFEI-IVVDDGSTDETEEILEEYAE------SDPNIRYIRNPEN-----LGFSAA 69 (169)
T ss_dssp EEEESS--TTTHHHHHHHHHHHSGCEEEE-EEEECS-SSSHHHHHHHHHC------CSTTEEEEEHCCC-----SHHHHH
T ss_pred EEEeeC-CHHHHHHHHHHHhhccCCCEEE-EEeccccccccccccccccc------ccccccccccccc-----cccccc
Confidence 566777 6788888888774 233444 55666666655555655431 3678888864432 144455
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCceeccc-hHHHHHHHhc
Q 012284 202 TLHGASILLKLSKNWDWFINLNAADYPLIK-QDDLLHILSY 241 (467)
Q Consensus 202 tL~~~~~lL~~~~~wDyfinLSgsDyPLkT-~ddI~~~ls~ 241 (467)
.-.+++.+.. +|+..|.+.|++... .+++.+++..
T Consensus 70 ~n~~~~~a~~-----~~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 70 RNRGIKHAKG-----EYILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp HHHHHHH--S-----SEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred ccccccccce-----eEEEEeCCCceEcHHHHHHHHHHHHh
Confidence 5566666542 499999999999887 7788888876
No 17
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=73.74 E-value=10 Score=35.53 Aligned_cols=113 Identities=15% Similarity=0.204 Sum_probs=54.0
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCC--eEEeCccceeccC
Q 012284 120 PSLAYLISGSAGDAARIVRLLHAVYH---PKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQN--VDVIGKADFSYPA 194 (467)
Q Consensus 120 ~kiAYLIlahk~d~~~l~RLL~aLyh---P~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~N--V~vv~kr~~V~Wg 194 (467)
|+++.+|.+++ ..+.+.+.|+++-+ |+-.+ +=+|..+++...+.++++.+ .+++ |+++..... .
T Consensus 1 P~v~Vvip~~~-~~~~l~~~l~sl~~~~~~~~~v-~vvd~~~~~~~~~~~~~~~~------~~~~~~v~vi~~~~~---~ 69 (228)
T PF13641_consen 1 PRVSVVIPAYN-EDDVLRRCLESLLAQDYPRLEV-VVVDDGSDDETAEILRALAA------RYPRVRVRVIRRPRN---P 69 (228)
T ss_dssp --EEEE--BSS--HHHHHHHHHHHTTSHHHTEEE-EEEEE-SSS-GCTTHHHHHH------TTGG-GEEEEE-------H
T ss_pred CEEEEEEEecC-CHHHHHHHHHHHHcCCCCCeEE-EEEECCCChHHHHHHHHHHH------HcCCCceEEeecCCC---C
Confidence 56899999988 88899999999953 44344 33564444433333443332 3444 566643211 1
Q ss_pred Cc-hHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhcC-CCCCceee
Q 012284 195 GS-TSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYM-PKELNFVN 250 (467)
Q Consensus 195 G~-S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~~-~rg~NFIe 250 (467)
|. +...|.-++++.+ +.||++.|.+.+.| ..+-|...+..+ ..+...+.
T Consensus 70 g~~~k~~a~n~~~~~~-----~~d~i~~lD~D~~~--~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 70 GPGGKARALNEALAAA-----RGDYILFLDDDTVL--DPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHHHHHHHHHHHHH--------SEEEEE-SSEEE---CHHHHHHHHHHHBSS--EEE
T ss_pred CcchHHHHHHHHHHhc-----CCCEEEEECCCcEE--CHHHHHHHHHHHHhCCCCeEe
Confidence 22 3334444455442 37899999999888 444344433222 33556654
No 18
>PRK10063 putative glycosyl transferase; Provisional
Probab=70.44 E-value=91 Score=30.55 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=63.5
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC-----CCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccC
Q 012284 120 PSLAYLISGSAGDAARIVRLLHAVYH-----PKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPA 194 (467)
Q Consensus 120 ~kiAYLIlahk~d~~~l~RLL~aLyh-----P~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wg 194 (467)
|++..+|.+++ ..+.+.+.|+.|.. ..+.=+|=+|..|++.-.+-++.+. ...+|+++...+ .
T Consensus 1 ~~vSVIi~~yN-~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-------~~~~i~~i~~~~----~ 68 (248)
T PRK10063 1 MLLSVITVAFR-NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-------GIFNLRFVSEPD----N 68 (248)
T ss_pred CeEEEEEEeCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-------ccCCEEEEECCC----C
Confidence 67889999998 88889998888841 2345578899888776544444321 113577775432 3
Q ss_pred CchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHH
Q 012284 195 GSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHIL 239 (467)
Q Consensus 195 G~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~l 239 (467)
|.. .|.-.+++.+ .-||++.|.+.|+.....-++...+
T Consensus 69 G~~--~A~N~Gi~~a-----~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 69 GIY--DAMNKGIAMA-----QGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CHH--HHHHHHHHHc-----CCCEEEEEeCCcccCcCHHHHHHHH
Confidence 332 2333455543 2389999999999876433444444
No 19
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=70.24 E-value=41 Score=32.98 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=55.5
Q ss_pred cCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHHHHHHHHH
Q 012284 129 SAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTLHGASI 208 (467)
Q Consensus 129 hk~d~~~l~RLL~aLyhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~AtL~~~~~ 208 (467)
+..+.+.|+++|++|.. ++..+|=||-.+... ..+...+ ...++|+++...... |. -.|-=.+++.
T Consensus 3 yn~~~~~l~~~l~sl~~-q~~~iiVVDN~S~~~--~~~~~~~------~~~~~i~~i~~~~N~--G~---a~a~N~Gi~~ 68 (281)
T TIGR01556 3 FNPDLEHLGELITSLPK-QVDRIIAVDNSPHSD--QPLKNAR------LRGQKIALIHLGDNQ--GI---AGAQNQGLDA 68 (281)
T ss_pred cCccHHHHHHHHHHHHh-cCCEEEEEECcCCCc--HhHHHHh------ccCCCeEEEECCCCc--ch---HHHHHHHHHH
Confidence 44467899999999984 456788999876533 2222222 356889988643222 21 1233356666
Q ss_pred HHhcCCCCcEEEEecCCceec
Q 012284 209 LLKLSKNWDWFINLNAADYPL 229 (467)
Q Consensus 209 lL~~~~~wDyfinLSgsDyPL 229 (467)
|++ .+.||++.|-..+.|-
T Consensus 69 a~~--~~~d~i~~lD~D~~~~ 87 (281)
T TIGR01556 69 SFR--RGVQGVLLLDQDSRPG 87 (281)
T ss_pred HHH--CCCCEEEEECCCCCCC
Confidence 665 3679999999999985
No 20
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=68.45 E-value=3.1 Score=30.24 Aligned_cols=28 Identities=25% Similarity=0.578 Sum_probs=23.7
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCeEEEEEc
Q 012284 126 ISGSAGDAARIVRLLHAVYHPKNQYLLHLD 155 (467)
Q Consensus 126 Ilahk~d~~~l~RLL~aLyhP~n~y~IHvD 155 (467)
.+||. |.++|..+++.+ .|++.++||=|
T Consensus 14 fSgHa-d~~~L~~~i~~~-~p~~vilVHGe 41 (43)
T PF07521_consen 14 FSGHA-DREELLEFIEQL-NPRKVILVHGE 41 (43)
T ss_dssp CSSS--BHHHHHHHHHHH-CSSEEEEESSE
T ss_pred ecCCC-CHHHHHHHHHhc-CCCEEEEecCC
Confidence 35787 999999999999 79999999954
No 21
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=68.43 E-value=76 Score=29.60 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=59.1
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHH
Q 012284 122 LAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISS 201 (467)
Q Consensus 122 iAYLIlahk~d~~~l~RLL~aLyhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~A 201 (467)
+..+|.+|++..+.+.++|+.+......=+|=||-.+++.....+... ...+.+.++.. .++|. ..|
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~-------~~~~~~~v~~~----~~~g~--~~a 68 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQT-------VKYGGIFVITV----PHPGK--RRA 68 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhh-------ccCCcEEEEec----CCCCh--HHH
Confidence 567888998444999999999975323334555655555444333211 24566666643 23453 233
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHh
Q 012284 202 TLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 202 tL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls 240 (467)
.-.+++.+ +-||++.|-+.+.|-.. .|...+.
T Consensus 69 ~n~g~~~a-----~~d~v~~lD~D~~~~~~--~l~~l~~ 100 (235)
T cd06434 69 LAEGIRHV-----TTDIVVLLDSDTVWPPN--ALPEMLK 100 (235)
T ss_pred HHHHHHHh-----CCCEEEEECCCceeChh--HHHHHHH
Confidence 33444443 46999999999998744 3444443
No 22
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=68.27 E-value=57 Score=30.02 Aligned_cols=104 Identities=12% Similarity=0.126 Sum_probs=57.6
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCC--CeEEeCccceeccC
Q 012284 120 PSLAYLISGSAGDAARIVRLLHAVY---HPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQ--NVDVIGKADFSYPA 194 (467)
Q Consensus 120 ~kiAYLIlahk~d~~~l~RLL~aLy---hP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~--NV~vv~kr~~V~Wg 194 (467)
|++..+|-+++ ..+.+.++|+.|. .|. .=+|=||-.+++...+.++.+.+ .++ +++++.....+ |
T Consensus 1 p~vsviip~~n-~~~~l~~~L~sl~~q~~~~-~eiivVdd~s~d~t~~~~~~~~~------~~~~~~~~~~~~~~~~--g 70 (196)
T cd02520 1 PGVSILKPLCG-VDPNLYENLESFFQQDYPK-YEILFCVQDEDDPAIPVVRKLIA------KYPNVDARLLIGGEKV--G 70 (196)
T ss_pred CCeEEEEecCC-CCccHHHHHHHHHhccCCC-eEEEEEeCCCcchHHHHHHHHHH------HCCCCcEEEEecCCcC--C
Confidence 35788899998 5567888888884 244 33455666666554554544432 334 34454332222 2
Q ss_pred CchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHh
Q 012284 195 GSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 195 G~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls 240 (467)
+.....+.-.+++. ..-||++.+-+.+.+ +.+-|.+.+.
T Consensus 71 ~~~~~~~~n~g~~~-----a~~d~i~~~D~D~~~--~~~~l~~l~~ 109 (196)
T cd02520 71 INPKVNNLIKGYEE-----ARYDILVISDSDISV--PPDYLRRMVA 109 (196)
T ss_pred CCHhHHHHHHHHHh-----CCCCEEEEECCCceE--ChhHHHHHHH
Confidence 22222221223332 346899999887764 5566655554
No 23
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=66.90 E-value=42 Score=34.46 Aligned_cols=97 Identities=12% Similarity=0.178 Sum_probs=53.8
Q ss_pred CCcEEEEEEecCCC--HHHHHHHHHHH-----------cCCCCeEEEEEcCCCChhHHHHHHHhhhcccccc---cCCCe
Q 012284 119 PPSLAYLISGSAGD--AARIVRLLHAV-----------YHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFR---AAQNV 182 (467)
Q Consensus 119 p~kiAYLIlahk~d--~~~l~RLL~aL-----------yhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~---~~~NV 182 (467)
.+.+|||+.|..|- -.....+.+++ .||.|+. ++|.....-..++++...+..+... ....|
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~--~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANII--LFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceE--EeccCCCcCCHHHHHHHHHHhccCCcccCCceE
Confidence 47899999998753 23556666666 2565554 4472111111233443333333222 24566
Q ss_pred EEeCccceeccCCchHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 012284 183 DVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNA 224 (467)
Q Consensus 183 ~vv~kr~~V~WgG~S~V~AtL~~~~~lL~~~~~wDyfinLSg 224 (467)
.++.... .|-.+..+++--.+++.++..+||+++.
T Consensus 94 vII~~~e-------~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 94 LIIKNIE-------KTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred EEEeccc-------ccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 6666532 3333344455555666788899998886
No 24
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=64.76 E-value=77 Score=28.40 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=52.1
Q ss_pred EEEecCCCHHHHHHHHHHHc----C-CCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHH
Q 012284 125 LISGSAGDAARIVRLLHAVY----H-PKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSI 199 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLy----h-P~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V 199 (467)
+|.+|+ ..+.+.++|+.|. . ..+.=+|=+|-.+++.....++.+. ...+||.++.... ..| ..
T Consensus 2 iIp~~n-~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~------~~~~~i~~i~~~~--n~G---~~ 69 (181)
T cd04187 2 VVPVYN-EEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELA------ARDPRVKVIRLSR--NFG---QQ 69 (181)
T ss_pred EEeecC-chhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHH------hhCCCEEEEEecC--CCC---cH
Confidence 566777 7788888777663 1 1223345567777665444444332 3457888875321 222 22
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHh
Q 012284 200 SSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 200 ~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls 240 (467)
.|.-.+++.+. =||++.+.+.+. + +.+.+...++
T Consensus 70 ~a~n~g~~~a~-----~d~i~~~D~D~~-~-~~~~l~~l~~ 103 (181)
T cd04187 70 AALLAGLDHAR-----GDAVITMDADLQ-D-PPELIPEMLA 103 (181)
T ss_pred HHHHHHHHhcC-----CCEEEEEeCCCC-C-CHHHHHHHHH
Confidence 33334444432 288888886554 4 3444555444
No 25
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=64.65 E-value=60 Score=28.90 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=61.0
Q ss_pred EEEecCCCHHHHHHHHHHHcCC----CCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHH
Q 012284 125 LISGSAGDAARIVRLLHAVYHP----KNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSIS 200 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLyhP----~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~ 200 (467)
+|.+|+ ..+.+.++|+.+..- .+.=+|=+|..+++...+.++.+. ...+.++++...... | ...
T Consensus 2 ii~~~n-~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~------~~~~~~~~~~~~~n~---G--~~~ 69 (185)
T cd04179 2 VIPAYN-EEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELA------ARVPRVRVIRLSRNF---G--KGA 69 (185)
T ss_pred eecccC-hHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHH------HhCCCeEEEEccCCC---C--ccH
Confidence 466777 778888888888422 244466677766655555555443 234555554322211 2 334
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhc-CCCCCceee
Q 012284 201 STLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSY-MPKELNFVN 250 (467)
Q Consensus 201 AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~-~~rg~NFIe 250 (467)
|...+++.+- + ||++.|.+.|.+ +.+.|...++. ...+.+++-
T Consensus 70 a~n~g~~~a~--g---d~i~~lD~D~~~--~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 70 AVRAGFKAAR--G---DIVVTMDADLQH--PPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred HHHHHHHHhc--C---CEEEEEeCCCCC--CHHHHHHHHHHHhccCCcEEE
Confidence 4445555542 2 899999998875 55656666553 233445543
No 26
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=64.30 E-value=2.2e+02 Score=32.87 Aligned_cols=125 Identities=11% Similarity=0.106 Sum_probs=68.3
Q ss_pred CCCCCCcEEEEEEecCCCHH----HHHHHHHHHc---CCCCeEEEEEcCCCChh----HHHHHHHhhhcccccccCCCeE
Q 012284 115 SHPAPPSLAYLISGSAGDAA----RIVRLLHAVY---HPKNQYLLHLDQSAPQA----ERDSLAVTIESVPVFRAAQNVD 183 (467)
Q Consensus 115 ~~~~p~kiAYLIlahk~d~~----~l~RLL~aLy---hP~n~y~IHvD~ka~~~----~r~~L~~~v~~~~~~~~~~NV~ 183 (467)
+.+..+|.+.+|-+|+.|++ .++..++.+. .++++.++-+|..+++. +++.++.+.+..+ ..++|+
T Consensus 119 ~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~---~~~~i~ 195 (691)
T PRK05454 119 PPPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELG---GEGRIF 195 (691)
T ss_pred CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcC---CCCcEE
Confidence 44566899999999997775 4555555442 45566556666655543 2222333322211 245788
Q ss_pred EeCccceeccCCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccc-hHHHHHHHhcCCCCCceee
Q 012284 184 VIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIK-QDDLLHILSYMPKELNFVN 250 (467)
Q Consensus 184 vv~kr~~V~WgG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT-~ddI~~~ls~~~rg~NFIe 250 (467)
+....... |...- ++...+-+.+.++||++.|-+...|-.. ..+++..|.. +.+.-.|.
T Consensus 196 yr~R~~n~---~~KaG----Nl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~-dP~vGlVQ 255 (691)
T PRK05454 196 YRRRRRNV---GRKAG----NIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA-NPRAGLIQ 255 (691)
T ss_pred EEECCcCC---CccHH----HHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh-CcCEEEEe
Confidence 75433222 22111 1112222334689999999988886643 4556666653 33555555
No 27
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=64.28 E-value=1.1e+02 Score=27.62 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=58.8
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCC--CCeEEEEEcCCCChhHHHH-HHHhhhcccccccCCCeEEeCccceeccCCc
Q 012284 120 PSLAYLISGSAGDAARIVRLLHAVYHP--KNQYLLHLDQSAPQAERDS-LAVTIESVPVFRAAQNVDVIGKADFSYPAGS 196 (467)
Q Consensus 120 ~kiAYLIlahk~d~~~l~RLL~aLyhP--~n~y~IHvD~ka~~~~r~~-L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~ 196 (467)
|++.++|.+++++.+.+.++|+.|..- .+.-+|=+|..+++..-.. ++.+. ...+++.++.... -.|
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~------~~~~~~~~~~~~~---~~g- 70 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYA------AQDPRIKVVFREE---NGG- 70 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHH------hcCCCEEEEEccc---CCC-
Confidence 467889999984449999999999531 2334566666665432222 22222 2346677654221 122
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccc-hHHHHHHH
Q 012284 197 TSISSTLHGASILLKLSKNWDWFINLNAADYPLIK-QDDLLHIL 239 (467)
Q Consensus 197 S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT-~ddI~~~l 239 (467)
...|--.+++.+ .-||+..|.+.|.+-.. .+.+++.+
T Consensus 71 -~~~a~n~g~~~a-----~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 71 -ISAATNSALELA-----TGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred -HHHHHHHHHHhh-----cCCEEEEECCCCcCChHHHHHHHHHH
Confidence 234444455543 24899999888876322 24455555
No 28
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=64.03 E-value=1.5e+02 Score=30.54 Aligned_cols=112 Identities=9% Similarity=0.087 Sum_probs=62.4
Q ss_pred CCCCCcEEEEEEecCCCHHHHHHHHHHHcC----------CCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEe
Q 012284 116 HPAPPSLAYLISGSAGDAARIVRLLHAVYH----------PKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVI 185 (467)
Q Consensus 116 ~~~p~kiAYLIlahk~d~~~l~RLL~aLyh----------P~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv 185 (467)
.++.+.+..+|-+++ ..+.+.++|+.+.. ..+.=+|=||-.|.+.-.+.++++.+... ..-.+++++
T Consensus 66 ~~~~~~isVVIP~yN-e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~--~~~~~i~vi 142 (333)
T PTZ00260 66 KDSDVDLSIVIPAYN-EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI--NPNIDIRLL 142 (333)
T ss_pred CCCCeEEEEEEeeCC-CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC--CCCCcEEEE
Confidence 566789999999998 77888888877642 22444567787776654444444432110 011358887
Q ss_pred CccceeccCCchHHHHHHHHHHHHHhcCCCCcEEEEecCCce-eccchHHHHHHHh
Q 012284 186 GKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADY-PLIKQDDLLHILS 240 (467)
Q Consensus 186 ~kr~~V~WgG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDy-PLkT~ddI~~~ls 240 (467)
..... .|. -.|.-.+++.+ .-||++.+-+.+. +....+.+.+.+.
T Consensus 143 ~~~~N---~G~--~~A~~~Gi~~a-----~gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 143 SLLRN---KGK--GGAVRIGMLAS-----RGKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred EcCCC---CCh--HHHHHHHHHHc-----cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 53322 222 23333344433 2378888877654 3334445555554
No 29
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=62.97 E-value=82 Score=29.96 Aligned_cols=97 Identities=18% Similarity=0.293 Sum_probs=59.5
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHH
Q 012284 121 SLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSIS 200 (467)
Q Consensus 121 kiAYLIlahk~d~~~l~RLL~aLyhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~ 200 (467)
++..+|.+++ +.+.|.++|.+|..-... +|=||..+.+.-. ++. +..++.++.. .|+|++.-.
T Consensus 1 ~isvii~~~N-e~~~l~~~l~sl~~~~~e-iivvD~gStD~t~-~i~----------~~~~~~v~~~----~~~g~~~~~ 63 (229)
T cd02511 1 TLSVVIITKN-EERNIERCLESVKWAVDE-IIVVDSGSTDRTV-EIA----------KEYGAKVYQR----WWDGFGAQR 63 (229)
T ss_pred CEEEEEEeCC-cHHHHHHHHHHHhcccCE-EEEEeCCCCccHH-HHH----------HHcCCEEEEC----CCCChHHHH
Confidence 4678888988 888999999999742133 4568887766533 332 1245666643 567765321
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCceeccc-hHHHHHHHhc
Q 012284 201 STLHGASILLKLSKNWDWFINLNAADYPLIK-QDDLLHILSY 241 (467)
Q Consensus 201 AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT-~ddI~~~ls~ 241 (467)
-.+++.+ .-||++.|-+.+.+-.. .+++.+.+..
T Consensus 64 --n~~~~~a-----~~d~vl~lDaD~~~~~~~~~~l~~~~~~ 98 (229)
T cd02511 64 --NFALELA-----TNDWVLSLDADERLTPELADEILALLAT 98 (229)
T ss_pred --HHHHHhC-----CCCEEEEEeCCcCcCHHHHHHHHHHHhC
Confidence 1233322 24699999999986443 3455666654
No 30
>PRK10073 putative glycosyl transferase; Provisional
Probab=61.24 E-value=82 Score=32.35 Aligned_cols=93 Identities=11% Similarity=0.155 Sum_probs=60.8
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHcCC--CCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCc
Q 012284 119 PPSLAYLISGSAGDAARIVRLLHAVYHP--KNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGS 196 (467)
Q Consensus 119 p~kiAYLIlahk~d~~~l~RLL~aLyhP--~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~ 196 (467)
.|.+..+|-+++ ..+.|.+.|+.|..- .+.=+|=||-.+++...+-+..+. ...++|.++.+.+ +|.
T Consensus 5 ~p~vSVIIP~yN-~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~------~~~~~i~vi~~~n----~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYN-AGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYA------ENYPHVRLLHQAN----AGV 73 (328)
T ss_pred CCeEEEEEeccC-CHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHH------hhCCCEEEEECCC----CCh
Confidence 367899999998 678999999999532 244456667666665444454443 3567899886432 444
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEecCCceec
Q 012284 197 TSISSTLHGASILLKLSKNWDWFINLNAADYPL 229 (467)
Q Consensus 197 S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPL 229 (467)
+ .|--.+++.+ .=||+..|.+.|+..
T Consensus 74 ~--~arN~gl~~a-----~g~yi~flD~DD~~~ 99 (328)
T PRK10073 74 S--VARNTGLAVA-----TGKYVAFPDADDVVY 99 (328)
T ss_pred H--HHHHHHHHhC-----CCCEEEEECCCCccC
Confidence 3 3333455443 228999999999954
No 31
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=58.56 E-value=95 Score=28.95 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=60.4
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHHHHH
Q 012284 125 LISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISSTLH 204 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLyhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~AtL~ 204 (467)
+|.++++..+.+.++|+.+... +.-+|=+|..+++... ....+ ..+++.++.... . .| ...|--.
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~-~~~~~--------~~~~i~~i~~~~--n-~G--~~~a~N~ 66 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIE-LRLRL--------NSEKIELIHLGE--N-LG--IAKALNI 66 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHH-HHhhc--------cCCcEEEEECCC--c-ee--hHHhhhH
Confidence 5677884559999999999865 4455678887655432 22110 246787775322 1 22 2333345
Q ss_pred HHHHHHhcCCCCcEEEEecCCceeccchHHHHHHH
Q 012284 205 GASILLKLSKNWDWFINLNAADYPLIKQDDLLHIL 239 (467)
Q Consensus 205 ~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~l 239 (467)
+++.+.. .+.||++.|.+.+++ ..+.|.+.+
T Consensus 67 g~~~a~~--~~~d~v~~lD~D~~~--~~~~l~~l~ 97 (237)
T cd02526 67 GIKAALE--NGADYVLLFDQDSVP--PPDMVEKLL 97 (237)
T ss_pred HHHHHHh--CCCCEEEEECCCCCc--CHhHHHHHH
Confidence 5555543 368999999999986 466666663
No 32
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=58.38 E-value=1.7e+02 Score=27.95 Aligned_cols=105 Identities=10% Similarity=0.171 Sum_probs=60.0
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHH----cCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccC--CCeEEeCccce
Q 012284 117 PAPPSLAYLISGSAGDAARIVRLLHAV----YHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAA--QNVDVIGKADF 190 (467)
Q Consensus 117 ~~p~kiAYLIlahk~d~~~l~RLL~aL----yhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~--~NV~vv~kr~~ 190 (467)
+..|++..+|-+++ ..+.+..++..+ ....+.=+|-+|-.+++.-.+.++++. ..+ .+|.++....
T Consensus 6 ~~~~~vsVvIp~yn-e~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~------~~~~~~~v~~~~~~~- 77 (243)
T PLN02726 6 EGAMKYSIIVPTYN-ERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQ------KVYGEDRILLRPRPG- 77 (243)
T ss_pred CCCceEEEEEccCC-chhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHH------HhcCCCcEEEEecCC-
Confidence 34578999999998 777777766555 223244467788777765444444332 123 3566654221
Q ss_pred eccCCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHh
Q 012284 191 SYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 191 V~WgG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls 240 (467)
-.|.+ .|...+++.+ .=||++.|.+.+.+ ..+.|...+.
T Consensus 78 --n~G~~--~a~n~g~~~a-----~g~~i~~lD~D~~~--~~~~l~~l~~ 116 (243)
T PLN02726 78 --KLGLG--TAYIHGLKHA-----SGDFVVIMDADLSH--HPKYLPSFIK 116 (243)
T ss_pred --CCCHH--HHHHHHHHHc-----CCCEEEEEcCCCCC--CHHHHHHHHH
Confidence 12332 2333444433 24799999988873 5555555443
No 33
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=57.08 E-value=1.3e+02 Score=28.53 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=56.8
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CC-CeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCC
Q 012284 120 PSLAYLISGSAGDAARIVRLLHAVYH---PK-NQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAG 195 (467)
Q Consensus 120 ~kiAYLIlahk~d~~~l~RLL~aLyh---P~-n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG 195 (467)
|.+..+|-++. ..+.+.++|+.+.. |. +.=+|-||..+++...+.++.+.. ....+|.++.. ....|
T Consensus 1 p~vsIiIp~~N-e~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~-----~~~~~i~~~~~---~~~~G 71 (241)
T cd06427 1 PVYTILVPLYK-EAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL-----PSIFRVVVVPP---SQPRT 71 (241)
T ss_pred CeEEEEEecCC-cHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc-----CCCeeEEEecC---CCCCc
Confidence 46788999998 77899999999842 32 233556676666554444433210 01123444332 12233
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccc-hHHHHHHHh
Q 012284 196 STSISSTLHGASILLKLSKNWDWFINLNAADYPLIK-QDDLLHILS 240 (467)
Q Consensus 196 ~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT-~ddI~~~ls 240 (467)
.+ .|--.+++. ..-||++.+.+.|.+-.. ..+++.+|.
T Consensus 72 ~~--~a~n~g~~~-----a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 72 KP--KACNYALAF-----ARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred hH--HHHHHHHHh-----cCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 33 222233332 235899999998884422 224444554
No 34
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=56.72 E-value=1.3e+02 Score=28.72 Aligned_cols=106 Identities=10% Similarity=0.158 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCC-ChhHHHHHHHhhhcccccccCCCeEEeCccc--eeccCCch-----HHHHHHH
Q 012284 133 AARIVRLLHAVYHPKNQYLLHLDQSA-PQAERDSLAVTIESVPVFRAAQNVDVIGKAD--FSYPAGST-----SISSTLH 204 (467)
Q Consensus 133 ~~~l~RLL~aLyhP~n~y~IHvD~ka-~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~--~V~WgG~S-----~V~AtL~ 204 (467)
...+-.-++|+=|...+++|..=|.. ...|...++ ..+||.+..-.. ...+.... ..++-+.
T Consensus 36 TAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~----------~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (178)
T PRK07414 36 TSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQ----------LGQNLDWVRCDLPRCLDTPHLDESEKKALQELWQ 105 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHH----------hCCCcEEEECCCCCeeeCCCcCHHHHHHHHHHHH
Confidence 45888889999999999999998865 345554443 446777754222 12222222 2223333
Q ss_pred HHHHHHhcCCCCcEEEE---ecCCceeccchHHHHHHHhcCCCCCcee
Q 012284 205 GASILLKLSKNWDWFIN---LNAADYPLIKQDDLLHILSYMPKELNFV 249 (467)
Q Consensus 205 ~~~~lL~~~~~wDyfin---LSgsDyPLkT~ddI~~~ls~~~rg~NFI 249 (467)
-++.++. ..+||.+|+ +.+-+|=|.+-++++++|+..|.+.+-|
T Consensus 106 ~a~~~l~-~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evI 152 (178)
T PRK07414 106 YTQAVVD-EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVI 152 (178)
T ss_pred HHHHHHh-CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEE
Confidence 3344443 468999886 6777888999999999998767666655
No 35
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=54.22 E-value=1.4e+02 Score=25.56 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=53.1
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHH
Q 012284 125 LISGSAGDAARIVRLLHAVYH---PKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISS 201 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLyh---P~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~A 201 (467)
+|.+++ ..+.+.++|+.|.. +.-.+ |=+|..+.+...+.+.. ...++.++.... ..|. ..|
T Consensus 2 ii~~~~-~~~~l~~~l~sl~~~~~~~~~i-iivdd~s~~~~~~~~~~---------~~~~~~~~~~~~---~~g~--~~a 65 (166)
T cd04186 2 IIVNYN-SLEYLKACLDSLLAQTYPDFEV-IVVDNASTDGSVELLRE---------LFPEVRLIRNGE---NLGF--GAG 65 (166)
T ss_pred EEEecC-CHHHHHHHHHHHHhccCCCeEE-EEEECCCCchHHHHHHH---------hCCCeEEEecCC---CcCh--HHH
Confidence 566777 78999999999953 23344 44665555555544442 223677664322 1222 333
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHH
Q 012284 202 TLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHIL 239 (467)
Q Consensus 202 tL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~l 239 (467)
--.+++.+ +.+|++.+.+.+++- .+.+....
T Consensus 66 ~n~~~~~~-----~~~~i~~~D~D~~~~--~~~l~~~~ 96 (166)
T cd04186 66 NNQGIREA-----KGDYVLLLNPDTVVE--PGALLELL 96 (166)
T ss_pred hhHHHhhC-----CCCEEEEECCCcEEC--ccHHHHHH
Confidence 33444443 578999999888874 34444443
No 36
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=53.90 E-value=1.2e+02 Score=30.09 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=59.7
Q ss_pred EEEEecCCCH-HHHHHHHHHHcC---CC-CeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchH
Q 012284 124 YLISGSAGDA-ARIVRLLHAVYH---PK-NQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTS 198 (467)
Q Consensus 124 YLIlahk~d~-~~l~RLL~aLyh---P~-n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~ 198 (467)
.+|.++. .. +.+.++|.+|.. +. ..=+|-||-.+++.....+.+... ....++|+++..... .|++
T Consensus 2 IIIp~~N-~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~----~~~~~~v~vi~~~~n---~G~~- 72 (299)
T cd02510 2 VIIIFHN-EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYY----KKYLPKVKVLRLKKR---EGLI- 72 (299)
T ss_pred EEEEEec-CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHH----hhcCCcEEEEEcCCC---CCHH-
Confidence 3667777 55 999999999853 22 235789998887665444432110 134678999853221 3333
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHH
Q 012284 199 ISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHIL 239 (467)
Q Consensus 199 V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~l 239 (467)
.|--.+++.+ .-||++.|.+.+.+ +.+-|...+
T Consensus 73 -~a~N~g~~~A-----~gd~i~fLD~D~~~--~~~wL~~ll 105 (299)
T cd02510 73 -RARIAGARAA-----TGDVLVFLDSHCEV--NVGWLEPLL 105 (299)
T ss_pred -HHHHHHHHHc-----cCCEEEEEeCCccc--CccHHHHHH
Confidence 3444445543 23899999999887 444444443
No 37
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=49.58 E-value=2e+02 Score=33.10 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=64.9
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHH---cCC-CCeEEEEEcCCCChh--------------HHHHHHHhhhccccccc
Q 012284 117 PAPPSLAYLISGSAGDAARIVRLLHAV---YHP-KNQYLLHLDQSAPQA--------------ERDSLAVTIESVPVFRA 178 (467)
Q Consensus 117 ~~p~kiAYLIlahk~d~~~l~RLL~aL---yhP-~n~y~IHvD~ka~~~--------------~r~~L~~~v~~~~~~~~ 178 (467)
+..|+++.+|-+|+.+.+.+++.++++ +.| ++.=++=+|..+.+. .+.+++++. +
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~-------~ 200 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFC-------R 200 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHH-------H
Confidence 344789999999996667777777665 345 343345556554332 234454443 2
Q ss_pred CCCeEEeCccceeccCCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccch-HHHHHHHhcCCCCCceee
Q 012284 179 AQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQ-DDLLHILSYMPKELNFVN 250 (467)
Q Consensus 179 ~~NV~vv~kr~~V~WgG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~-ddI~~~ls~~~rg~NFIe 250 (467)
..+|+++.... ..++-. .++..+++. .+-||++.+-+.+.|-... .++..+|.. +.+..++.
T Consensus 201 ~~~v~yi~r~~--n~~~KA------gnLN~al~~-a~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~Vq 263 (713)
T TIGR03030 201 KLGVNYITRPR--NVHAKA------GNINNALKH-TDGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLVQ 263 (713)
T ss_pred HcCcEEEECCC--CCCCCh------HHHHHHHHh-cCCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEEe
Confidence 23677775332 222211 122233332 2458999999999986432 455556643 33444553
No 38
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=48.70 E-value=1.5e+02 Score=27.63 Aligned_cols=105 Identities=8% Similarity=-0.016 Sum_probs=58.5
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHH
Q 012284 125 LISGSAGDAARIVRLLHAVYH---PKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISS 201 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLyh---P~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~A 201 (467)
+|.+++ ..+.|.++|+.|.. +++.=+|-+|..+++.....++.+.+.. ...+++++.....-. .+.+.-.|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~----~~~~~~~~~~~~~~~-~~~G~~~a 75 (219)
T cd06913 2 ILPVHN-GEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL----EDSGVIVLVGSHNSP-SPKGVGYA 75 (219)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC----cccCeEEEEecccCC-CCccHHHH
Confidence 566777 78999999999953 3345568888887765544454443211 134566553211111 11223333
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCceeccc-hHHHHHHHh
Q 012284 202 TLHGASILLKLSKNWDWFINLNAADYPLIK-QDDLLHILS 240 (467)
Q Consensus 202 tL~~~~~lL~~~~~wDyfinLSgsDyPLkT-~ddI~~~ls 240 (467)
.-.+++.+ .-||++.|.+.|++.-. ...+...+.
T Consensus 76 ~N~g~~~a-----~gd~i~~lD~D~~~~~~~l~~~~~~~~ 110 (219)
T cd06913 76 KNQAIAQS-----SGRYLCFLDSDDVMMPQRIRLQYEAAL 110 (219)
T ss_pred HHHHHHhc-----CCCEEEEECCCccCChhHHHHHHHHHH
Confidence 33444432 34899999999985443 233444443
No 39
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=48.45 E-value=2.3e+02 Score=27.44 Aligned_cols=106 Identities=19% Similarity=0.157 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCC-ChhHHHHHHHhhhcccccccCCCeEEeCccceeccCC------chHHHHHHHH
Q 012284 133 AARIVRLLHAVYHPKNQYLLHLDQSA-PQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAG------STSISSTLHG 205 (467)
Q Consensus 133 ~~~l~RLL~aLyhP~n~y~IHvD~ka-~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG------~S~V~AtL~~ 205 (467)
...+---++|+-+...+.+|..=+.. ...|...++ ..+||.+..-.....|.. .-.....+.-
T Consensus 37 t~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~----------~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~ 106 (191)
T PRK05986 37 TAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE----------FGGGVEFHVMGTGFTWETQDRERDIAAAREGWEE 106 (191)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh----------cCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHH
Confidence 34677778888899999999998866 445665553 346787764333333432 1223333444
Q ss_pred HHHHHhcCCCCcEEEE---ecCCceeccchHHHHHHHhcCCCCCcee
Q 012284 206 ASILLKLSKNWDWFIN---LNAADYPLIKQDDLLHILSYMPKELNFV 249 (467)
Q Consensus 206 ~~~lL~~~~~wDyfin---LSgsDyPLkT~ddI~~~ls~~~rg~NFI 249 (467)
++.++. ..+||-+|+ +-+-+|=|.+-++++++|+..|.+.+-|
T Consensus 107 a~~~l~-~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV 152 (191)
T PRK05986 107 AKRMLA-DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVV 152 (191)
T ss_pred HHHHHh-CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEE
Confidence 444554 568999886 6778888999999999998767665554
No 40
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.61 E-value=2.2e+02 Score=25.88 Aligned_cols=90 Identities=11% Similarity=0.192 Sum_probs=51.5
Q ss_pred EEEecCCCHHHHHHHHHHHcCC--CCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHHH
Q 012284 125 LISGSAGDAARIVRLLHAVYHP--KNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISST 202 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLyhP--~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~At 202 (467)
+|.+++ ..+.+.++|++|..- .+.=+|=+|..+.+.-.+.++++. ...++.++.... .-|....+
T Consensus 2 iI~~~n-~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~-------~~~~i~~~~~~~--n~g~~~~~--- 68 (202)
T cd04185 2 VVVTYN-RLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG-------DLDNIVYLRLPE--NLGGAGGF--- 68 (202)
T ss_pred EEEeeC-CHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc-------CCCceEEEECcc--ccchhhHH---
Confidence 567777 778999999999531 122356678777765554444331 222355553221 22322222
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCceec
Q 012284 203 LHGASILLKLSKNWDWFINLNAADYPL 229 (467)
Q Consensus 203 L~~~~~lL~~~~~wDyfinLSgsDyPL 229 (467)
=.+++.+. ..+.||++.|.+.|.+-
T Consensus 69 n~~~~~a~--~~~~d~v~~ld~D~~~~ 93 (202)
T cd04185 69 YEGVRRAY--ELGYDWIWLMDDDAIPD 93 (202)
T ss_pred HHHHHHHh--ccCCCEEEEeCCCCCcC
Confidence 23344444 24579999999888874
No 41
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=46.22 E-value=1.5e+02 Score=34.32 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=56.9
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHH----HcCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceec
Q 012284 117 PAPPSLAYLISGSAGDAARIVRLLHA----VYHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSY 192 (467)
Q Consensus 117 ~~p~kiAYLIlahk~d~~~l~RLL~a----LyhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~ 192 (467)
+.+++++.+|=+|+ +...+.+++.. ++.|+-.+++=.|.. ++.-...+.+.. +.+|+|+++-....
T Consensus 60 ~~~~~vsIlVPa~n-E~~vi~~~i~~ll~~ldYP~~eI~vi~~~n-D~~T~~~~~~l~------~~~p~~~~v~~~~~-- 129 (727)
T PRK11234 60 PDEKPLAIMVPAWN-ETGVIGNMAELAATTLDYENYHIFVGTYPN-DPATQADVDAVC------ARFPNVHKVVCARP-- 129 (727)
T ss_pred CCCCCEEEEEecCc-chhhHHHHHHHHHHhCCCCCeEEEEEecCC-ChhHHHHHHHHH------HHCCCcEEEEeCCC--
Confidence 45589999999998 77766666664 566875555545432 222123333321 36788875532221
Q ss_pred cCCchHHHHHHHHHHHHHhc----CCCCcEEEEecCCceec
Q 012284 193 PAGSTSISSTLHGASILLKL----SKNWDWFINLNAADYPL 229 (467)
Q Consensus 193 WgG~S~V~AtL~~~~~lL~~----~~~wDyfinLSgsDyPL 229 (467)
|.-+-..|--.+++.+.+. +.+++.++..-+.|.|=
T Consensus 130 -g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~ 169 (727)
T PRK11234 130 -GPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVIS 169 (727)
T ss_pred -CCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCC
Confidence 1223344444444444321 34678888888877753
No 42
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.77 E-value=2.6e+02 Score=25.57 Aligned_cols=99 Identities=15% Similarity=0.273 Sum_probs=53.7
Q ss_pred EEEecCCCHHHHHHHHHHHc---CCC--CeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHH
Q 012284 125 LISGSAGDAARIVRLLHAVY---HPK--NQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSI 199 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLy---hP~--n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V 199 (467)
+|.+++ +.+.+.++|++|. +|. ..+ |=||-.+++...+.++ +... ...++|.++.... ..++|..
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~~ei-ivvdd~s~d~t~~~~~-~~~~----~~~~~v~~~~~~~-~~~~g~~-- 71 (229)
T cd04192 2 VIAARN-EAENLPRLLQSLSALDYPKEKFEV-ILVDDHSTDGTVQILE-FAAA----KPNFQLKILNNSR-VSISGKK-- 71 (229)
T ss_pred EEEecC-cHHHHHHHHHHHHhCCCCCCceEE-EEEcCCCCcChHHHHH-HHHh----CCCcceEEeeccC-cccchhH--
Confidence 456666 8899999999983 343 344 4455555444333332 2111 2346777775432 1222222
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHh
Q 012284 200 SSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 200 ~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls 240 (467)
.|--.+++. ..-||++.+.+.|.+ ..+.|...+.
T Consensus 72 ~a~n~g~~~-----~~~d~i~~~D~D~~~--~~~~l~~l~~ 105 (229)
T cd04192 72 NALTTAIKA-----AKGDWIVTTDADCVV--PSNWLLTFVA 105 (229)
T ss_pred HHHHHHHHH-----hcCCEEEEECCCccc--CHHHHHHHHH
Confidence 222233332 235899999999976 3455555554
No 43
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=42.26 E-value=2.1e+02 Score=26.27 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=55.6
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHH
Q 012284 125 LISGSAGDAARIVRLLHAVYHP---KNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISS 201 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLyhP---~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~A 201 (467)
+|.+++ ..+.|.++|+.+..- .+.=+|=||-.+++.-.+.++.+. ...++|.++... .-+|.+ .|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~------~~~~~i~~~~~~---~n~G~~--~a 69 (224)
T cd06442 2 IIPTYN-ERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELA------KEYPRVRLIVRP---GKRGLG--SA 69 (224)
T ss_pred eEeccc-hhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHH------HhCCceEEEecC---CCCChH--HH
Confidence 566777 678888988888631 233356677766654444444433 245677666422 224443 33
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHh
Q 012284 202 TLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 202 tL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls 240 (467)
--.+++.+. =||++.|.+.|.+ ..+.|...+.
T Consensus 70 ~n~g~~~a~-----gd~i~~lD~D~~~--~~~~l~~l~~ 101 (224)
T cd06442 70 YIEGFKAAR-----GDVIVVMDADLSH--PPEYIPELLE 101 (224)
T ss_pred HHHHHHHcC-----CCEEEEEECCCCC--CHHHHHHHHH
Confidence 335555542 2899999988775 3444444443
No 44
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=41.08 E-value=1.7e+02 Score=27.80 Aligned_cols=106 Identities=21% Similarity=0.218 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCC-CChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchH------HHHHHHH
Q 012284 133 AARIVRLLHAVYHPKNQYLLHLDQS-APQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTS------ISSTLHG 205 (467)
Q Consensus 133 ~~~l~RLL~aLyhP~n~y~IHvD~k-a~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~------V~AtL~~ 205 (467)
...+--.++|+=|...++++..=+. ....|...+ ...+||.+..-.....|..-.. .+.-+.-
T Consensus 18 TAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l----------~~l~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~ 87 (172)
T PF02572_consen 18 TAALGLALRAAGHGMRVLIVQFLKGGRYSGELKAL----------KKLPNVEIERFGKGFVWRMNEEEEDRAAAREGLEE 87 (172)
T ss_dssp HHHHHHHHHHHCTT--EEEEESS--SS--HHHHHH----------GGGT--EEEE--TT----GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHH----------HhCCeEEEEEcCCcccccCCCcHHHHHHHHHHHHH
Confidence 3467778899999999999999887 334455444 3567777764333445543322 2233333
Q ss_pred HHHHHhcCCCCcEEEE---ecCCceeccchHHHHHHHhcCCCCCcee
Q 012284 206 ASILLKLSKNWDWFIN---LNAADYPLIKQDDLLHILSYMPKELNFV 249 (467)
Q Consensus 206 ~~~lL~~~~~wDyfin---LSgsDyPLkT~ddI~~~ls~~~rg~NFI 249 (467)
++.++. ...||.+|+ +-+-+|=+.+.+++.++++..|...+-|
T Consensus 88 a~~~i~-~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evV 133 (172)
T PF02572_consen 88 AKEAIS-SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVV 133 (172)
T ss_dssp HHHHTT--TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEE
T ss_pred HHHHHh-CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEE
Confidence 333333 568999886 6667788899999999998766555554
No 45
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=37.46 E-value=2.5e+02 Score=23.60 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=51.8
Q ss_pred EEEecCCCHHHHHHHHHHHcCC--CCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHHH
Q 012284 125 LISGSAGDAARIVRLLHAVYHP--KNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISST 202 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLyhP--~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~At 202 (467)
+|.+++ ..+.+.++|+.+..- .+.=+|=+|-.+++...+.+..+... ...++.++... ...| ...|-
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~-----~~~~~~~~~~~---~~~g--~~~~~ 70 (180)
T cd06423 2 IVPAYN-EEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAAL-----YIRRVLVVRDK---ENGG--KAGAL 70 (180)
T ss_pred eecccC-hHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcc-----ccceEEEEEec---ccCC--chHHH
Confidence 456676 779999999999642 13334456666655544444433210 11334444321 1233 22333
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHH
Q 012284 203 LHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHI 238 (467)
Q Consensus 203 L~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ 238 (467)
-.+++.+ .-||++.+-+.|++ +.+.|...
T Consensus 71 n~~~~~~-----~~~~i~~~D~D~~~--~~~~l~~~ 99 (180)
T cd06423 71 NAGLRHA-----KGDIVVVLDADTIL--EPDALKRL 99 (180)
T ss_pred HHHHHhc-----CCCEEEEECCCCCc--ChHHHHHH
Confidence 3344433 56899999988877 44555555
No 46
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.71 E-value=3.2e+02 Score=24.63 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=55.9
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC--CeEEEEEcCCCChhHHHHHHHhhhcccccccC-CCeEEeCccceeccCCchHHH
Q 012284 124 YLISGSAGDAARIVRLLHAVYHPK--NQYLLHLDQSAPQAERDSLAVTIESVPVFRAA-QNVDVIGKADFSYPAGSTSIS 200 (467)
Q Consensus 124 YLIlahk~d~~~l~RLL~aLyhP~--n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~-~NV~vv~kr~~V~WgG~S~V~ 200 (467)
.+|-+++ ..+.|.+.|..+.... ..=+|=+|..+++...+.++.+.+ .+ .++.++... ++.+...
T Consensus 2 IvIp~yn-~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~------~~~~~~~~~~~~-----~~~G~~~ 69 (214)
T cd04196 2 VLMATYN-GEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYID------KDPFIIILIRNG-----KNLGVAR 69 (214)
T ss_pred EEEEecC-cHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHh------cCCceEEEEeCC-----CCccHHH
Confidence 4666777 7788999998885321 333566777776665555555432 23 244444322 2333333
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHh
Q 012284 201 STLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 201 AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls 240 (467)
+.-.+++. ...||++.|.+.|+.. .+.|.+.++
T Consensus 70 ~~n~g~~~-----~~g~~v~~ld~Dd~~~--~~~l~~~~~ 102 (214)
T cd04196 70 NFESLLQA-----ADGDYVFFCDQDDIWL--PDKLERLLK 102 (214)
T ss_pred HHHHHHHh-----CCCCEEEEECCCcccC--hhHHHHHHH
Confidence 33333222 3579999999998875 444554444
No 47
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=36.61 E-value=4.6e+02 Score=26.80 Aligned_cols=106 Identities=13% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc-----CCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceecc
Q 012284 119 PPSLAYLISGSAGDAARIVRLLHAVY-----HPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYP 193 (467)
Q Consensus 119 p~kiAYLIlahk~d~~~l~RLL~aLy-----hP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~W 193 (467)
.+++..+|-+++ +.+.+.++++++. .+.+.=+|=+|..+++.-.+.+++..+ ....+|..+...
T Consensus 5 ~~~vSVVIP~yN-E~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~-----~~~~~v~~i~~~----- 73 (325)
T PRK10714 5 IKKVSVVIPVYN-EQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQ-----APDSHIVAILLN----- 73 (325)
T ss_pred CCeEEEEEcccC-chhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHh-----hcCCcEEEEEeC-----
Confidence 457889999998 7777777766652 123334567777776655544444321 112455543211
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhcC
Q 012284 194 AGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYM 242 (467)
Q Consensus 194 gG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~~ 242 (467)
.++..-.|...+++.+ .-||++.+-+.+- .+.++|.+.++.+
T Consensus 74 ~n~G~~~A~~~G~~~A-----~gd~vv~~DaD~q--~~p~~i~~l~~~~ 115 (325)
T PRK10714 74 RNYGQHSAIMAGFSHV-----TGDLIITLDADLQ--NPPEEIPRLVAKA 115 (325)
T ss_pred CCCCHHHHHHHHHHhC-----CCCEEEEECCCCC--CCHHHHHHHHHHH
Confidence 2233334444555443 3489998888776 3666666666554
No 48
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=36.12 E-value=1.6e+02 Score=30.19 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=11.0
Q ss_pred CCcEEEEEEecCCC
Q 012284 119 PPSLAYLISGSAGD 132 (467)
Q Consensus 119 p~kiAYLIlahk~d 132 (467)
.+.+|||+.|..|.
T Consensus 17 rl~HAyLf~G~~G~ 30 (290)
T PRK05917 17 KVPSAIILHGQDLS 30 (290)
T ss_pred CcCeeEeeECCCCC
Confidence 47899999887653
No 49
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=35.77 E-value=17 Score=30.03 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=15.7
Q ss_pred ecCCceeccchHHHHHHHh
Q 012284 222 LNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 222 LSgsDyPLkT~ddI~~~ls 240 (467)
+.|.|||++|..||+..|=
T Consensus 11 ~~~a~FPI~s~~eL~~alP 29 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPALP 29 (75)
T ss_dssp HTTSSSTTBHHHHHHHH-T
T ss_pred HhcCCCCCCCHHHHHHhCC
Confidence 4578999999999999983
No 50
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=35.27 E-value=22 Score=31.69 Aligned_cols=11 Identities=27% Similarity=0.479 Sum_probs=5.3
Q ss_pred hHHHHHHHHHH
Q 012284 64 RSVLLTTLFFS 74 (467)
Q Consensus 64 ~~~~~~~~~~~ 74 (467)
||+|++.++++
T Consensus 1 RW~l~~iii~~ 11 (130)
T PF12273_consen 1 RWVLFAIIIVA 11 (130)
T ss_pred CeeeHHHHHHH
Confidence 68744333333
No 51
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=35.16 E-value=2.5e+02 Score=22.92 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=48.0
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHHH
Q 012284 125 LISGSAGDAARIVRLLHAVYHPK--NQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISST 202 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLyhP~--n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~At 202 (467)
+|.+++ ..+.+.++++++..-. +.-++-+|..+++.....+....+ ...++..+. ..+..+...+-
T Consensus 2 ii~~~~-~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----~~~~~g~~~~~ 69 (156)
T cd00761 2 IIPAYN-EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAK------KDPRVIRVI-----NEENQGLAAAR 69 (156)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHh------cCCCeEEEE-----ecCCCChHHHH
Confidence 456666 7899999999995332 344556777666554444443321 111222221 22223333333
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCceecc
Q 012284 203 LHGASILLKLSKNWDWFINLNAADYPLI 230 (467)
Q Consensus 203 L~~~~~lL~~~~~wDyfinLSgsDyPLk 230 (467)
-.+++.+ +-||++.+.+.+.+..
T Consensus 70 ~~~~~~~-----~~d~v~~~d~D~~~~~ 92 (156)
T cd00761 70 NAGLKAA-----RGEYILFLDADDLLLP 92 (156)
T ss_pred HHHHHHh-----cCCEEEEECCCCccCc
Confidence 3444443 4789999987777543
No 52
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=33.81 E-value=1.8e+02 Score=29.53 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=10.7
Q ss_pred CCcEEEEEEecCCC
Q 012284 119 PPSLAYLISGSAGD 132 (467)
Q Consensus 119 p~kiAYLIlahk~d 132 (467)
.+.+|||+.|..|-
T Consensus 5 ~~~HA~Lf~G~~G~ 18 (261)
T PRK05818 5 NKTHPLLLIERKGS 18 (261)
T ss_pred CCCcceeeeCCCCC
Confidence 35789999988765
No 53
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=33.63 E-value=3.1e+02 Score=31.78 Aligned_cols=108 Identities=8% Similarity=0.088 Sum_probs=59.7
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHH----cCCCCeEEEEE--cCCCChhHHHHHHHhhhcccccccCCCeEEeCcccee
Q 012284 118 APPSLAYLISGSAGDAARIVRLLHAV----YHPKNQYLLHL--DQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFS 191 (467)
Q Consensus 118 ~p~kiAYLIlahk~d~~~l~RLL~aL----yhP~n~y~IHv--D~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V 191 (467)
..++++.+|=+|+ +.+.+.++++++ +.|+ |-|.| +..-. +-...++... ..+|++++|....
T Consensus 69 ~~~~vsIlVPa~n-E~~VI~~~v~~ll~~ldYp~--~~I~v~~~~nD~-~T~~~~~~~~------~~~p~~~~v~~~~-- 136 (703)
T PRK15489 69 DEQPLAIMVPAWK-EYDVIAKMIENMLATLDYRR--YVIFVGTYPNDA-ETITEVERMR------RRYKRLVRVEVPH-- 136 (703)
T ss_pred CCCceEEEEeCCC-cHHHHHHHHHHHHhcCCCCC--eEEEEEecCCCc-cHHHHHHHHh------ccCCcEEEEEcCC--
Confidence 4468999999999 888888888863 5674 44555 12111 1122233221 3568888765322
Q ss_pred ccCC-chHHHHHHHHHHHHHh----cCCCCcEEEEecCCceeccchHHHHHHH
Q 012284 192 YPAG-STSISSTLHGASILLK----LSKNWDWFINLNAADYPLIKQDDLLHIL 239 (467)
Q Consensus 192 ~WgG-~S~V~AtL~~~~~lL~----~~~~wDyfinLSgsDyPLkT~ddI~~~l 239 (467)
+| -+--.|-=.+++.+++ .+..++.++..-+.|.|=-.+-....++
T Consensus 137 --~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~~~~ 187 (703)
T PRK15489 137 --DGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYFNYL 187 (703)
T ss_pred --CCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHHHhh
Confidence 23 2222222233333322 2455777899999998755444433333
No 54
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=32.81 E-value=4.8e+02 Score=25.51 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCC-ChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCch------HHHHHHHH
Q 012284 133 AARIVRLLHAVYHPKNQYLLHLDQSA-PQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGST------SISSTLHG 205 (467)
Q Consensus 133 ~~~l~RLL~aLyhP~n~y~IHvD~ka-~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S------~V~AtL~~ 205 (467)
...+---++|+=|.-.++++.+=+-. ...|+..+..+ -.+|.+..-..-++|.... ..++-+.-
T Consensus 43 TAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~---------~~~v~~~~~~~g~tw~~~~~~~d~~aa~~~w~~ 113 (198)
T COG2109 43 TAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF---------GLGVEFHGMGEGFTWETQDREADIAAAKAGWEH 113 (198)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh---------ccceeEEecCCceeCCCcCcHHHHHHHHHHHHH
Confidence 44777788899999999999987766 45566555321 2567776655667888663 33333334
Q ss_pred HHHHHhcCCCCcEEEEecCC----ceeccchHHHHHHHhcCCCCCcee
Q 012284 206 ASILLKLSKNWDWFINLNAA----DYPLIKQDDLLHILSYMPKELNFV 249 (467)
Q Consensus 206 ~~~lL~~~~~wDyfinLSgs----DyPLkT~ddI~~~ls~~~rg~NFI 249 (467)
++.++. ++.||.+|+ -.- .|=+.+.+|+...|..-|.....|
T Consensus 114 a~~~l~-~~~ydlviL-DEl~~al~~g~l~~eeV~~~l~~kP~~~~vI 159 (198)
T COG2109 114 AKEALA-DGKYDLVIL-DELNYALRYGLLPLEEVVALLKARPEHTHVI 159 (198)
T ss_pred HHHHHh-CCCCCEEEE-ehhhHHHHcCCCCHHHHHHHHhcCCCCcEEE
Confidence 444554 457887664 444 445589999999998767665554
No 55
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=31.67 E-value=3.9e+02 Score=24.05 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=47.6
Q ss_pred EEEEecCCC-HHHHHHHHHHHcC---CCCeEEEEEcCCC-ChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchH
Q 012284 124 YLISGSAGD-AARIVRLLHAVYH---PKNQYLLHLDQSA-PQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTS 198 (467)
Q Consensus 124 YLIlahk~d-~~~l~RLL~aLyh---P~n~y~IHvD~ka-~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~ 198 (467)
.+|-++.++ .+.+.++|+++.. +.... |=||-.+ ++.-.+-+..+. ..++ +.++..... .|.
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~ei-iivdd~ss~d~t~~~~~~~~------~~~~-i~~i~~~~n---~G~-- 68 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDEV-VLVKDGPVTQSLNEVLEEFK------RKLP-LKVVPLEKN---RGL-- 68 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcEE-EEEECCCCchhHHHHHHHHH------hcCC-eEEEEcCcc---ccH--
Confidence 356666543 5789999999953 33334 4455444 444333333332 1233 766643221 232
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEecCCceecc
Q 012284 199 ISSTLHGASILLKLSKNWDWFINLNAADYPLI 230 (467)
Q Consensus 199 V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLk 230 (467)
..|.-.|++. .+-||++.|.+.|++..
T Consensus 69 ~~a~N~g~~~-----a~gd~i~~lD~Dd~~~~ 95 (201)
T cd04195 69 GKALNEGLKH-----CTYDWVARMDTDDISLP 95 (201)
T ss_pred HHHHHHHHHh-----cCCCEEEEeCCccccCc
Confidence 2232233332 24589999999998653
No 56
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=31.21 E-value=2.3e+02 Score=26.06 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=53.7
Q ss_pred EEEecCCCHHHHHHHHHHHcC------CCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCC-eEEeCccceeccCCch
Q 012284 125 LISGSAGDAARIVRLLHAVYH------PKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQN-VDVIGKADFSYPAGST 197 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLyh------P~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~N-V~vv~kr~~V~WgG~S 197 (467)
+|.++. ..+.+.++|+.+.. +.+.=+|-+|-.+++.-...++.+.+ ..++ |+++.... ..|.+
T Consensus 2 iip~yN-~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~------~~~~~i~~i~~~~---n~G~~ 71 (211)
T cd04188 2 VIPAYN-EEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLAR------KNPALIRVLTLPK---NRGKG 71 (211)
T ss_pred EEcccC-hHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHH------hCCCcEEEEEccc---CCCcH
Confidence 455666 55666666665531 13444677888887765555555432 3343 46654321 23433
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHh
Q 012284 198 SISSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 198 ~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls 240 (467)
.|...+++.+. -||++.|.+.+.+ +.+.|...+.
T Consensus 72 --~a~~~g~~~a~-----gd~i~~ld~D~~~--~~~~l~~l~~ 105 (211)
T cd04188 72 --GAVRAGMLAAR-----GDYILFADADLAT--PFEELEKLEE 105 (211)
T ss_pred --HHHHHHHHHhc-----CCEEEEEeCCCCC--CHHHHHHHHH
Confidence 34445666552 2899999988873 3444544444
No 57
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=31.16 E-value=2.9e+02 Score=26.98 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=66.0
Q ss_pred EEEEEEecCCCHHHHHHHHHHH---cCCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchH
Q 012284 122 LAYLISGSAGDAARIVRLLHAV---YHPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTS 198 (467)
Q Consensus 122 iAYLIlahk~d~~~l~RLL~aL---yhP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~ 198 (467)
--++++|++|-...+.||++++ |.|+.++ +--+...+ .+..+.+....+ .....|..+ .+...|.=.=.|.
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS---~~k~~~F~~~~a-~~~a~~~~i-pRsReVgQS~ltS 113 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMS---EQKARSFELSLA-HCKAKNYEI-PRSREVGQSWLTS 113 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHhhcCceEEE-EecCchhh---HHHHHhhhcccc-ccchhheec-chhhhhhhhhhhh
Confidence 3577888888888888999988 5666554 22222222 223333322111 123345554 3334455444566
Q ss_pred HHHHHHHHHHHHhc--CCCCcEEEEec-CCceeccchHHHHHHHh
Q 012284 199 ISSTLHGASILLKL--SKNWDWFINLN-AADYPLIKQDDLLHILS 240 (467)
Q Consensus 199 V~AtL~~~~~lL~~--~~~wDyfinLS-gsDyPLkT~ddI~~~ls 240 (467)
|-.++.++...+.. ...-|-+.+.- |.|.|+-=-..|.++|.
T Consensus 114 v~Tti~all~s~~lv~RirPdlil~NGPGTCv~i~~~a~l~~iL~ 158 (211)
T KOG3339|consen 114 VFTTIWALLQSFVLVWRIRPDLILCNGPGTCVPICLSAYLMEILG 158 (211)
T ss_pred HHHHHHHHHHHheEEEecCCCEEEECCCCcEeHHHHHHHHHHHhC
Confidence 77777777665532 12245555554 79999988888888885
No 58
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=30.50 E-value=2.8e+02 Score=28.47 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=57.5
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCC--ChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCc
Q 012284 119 PPSLAYLISGSAGDAARIVRLLHAVYHPKNQYLLHLDQSA--PQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGS 196 (467)
Q Consensus 119 p~kiAYLIlahk~d~~~l~RLL~aLyhP~n~y~IHvD~ka--~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~ 196 (467)
.+.+|||+.|..|.......+.++|--.+. -+... .-..-..+. ...+|+|+++... |-
T Consensus 22 rl~hAyLf~G~~G~~~~A~~~A~~llC~~~-----~~~~~Cg~C~~C~~i~--------~~~HPD~~~i~p~------~~ 82 (290)
T PRK07276 22 RLNHAYLFSGDFASFEMALFLAQSLFCEQK-----EGVLPCGHCRSCRLIE--------QGEFSDVTVIEPQ------GQ 82 (290)
T ss_pred CcceeeeeeCCccHHHHHHHHHHHHcCCCC-----CCCCCCCCCHHHHHHh--------cCCCCCeeeecCC------CC
Confidence 478999999877665555666666642210 00000 001111111 1357777777532 11
Q ss_pred hH-HHHHHHHHHHHHhc--CCCCcEEEEecCCceeccchHHHHHHHhcCCCCCceeecc
Q 012284 197 TS-ISSTLHGASILLKL--SKNWDWFINLNAADYPLIKQDDLLHILSYMPKELNFVNHT 252 (467)
Q Consensus 197 S~-V~AtL~~~~~lL~~--~~~wDyfinLSgsDyPLkT~ddI~~~ls~~~rg~NFIe~~ 252 (467)
+. |+..-.+.+.+... ...|..||.=.+..+-.-...-|+.++++=+.+.-||=.+
T Consensus 83 ~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t 141 (290)
T PRK07276 83 VIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLT 141 (290)
T ss_pred cCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 11 22222333333322 2356666666666666667777888887633334555444
No 59
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=29.28 E-value=3.7e+02 Score=27.61 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=17.3
Q ss_pred CCcEEEEEEecCCC--HHHHHHHHHHHc
Q 012284 119 PPSLAYLISGSAGD--AARIVRLLHAVY 144 (467)
Q Consensus 119 p~kiAYLIlahk~d--~~~l~RLL~aLy 144 (467)
.+.+|||+.|..|- ......+.+++.
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 47789999998764 334455556664
No 60
>PLN02917 CMP-KDO synthetase
Probab=27.03 E-value=6.2e+02 Score=25.66 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=20.5
Q ss_pred CCcEEEEecCCceeccchHHHHHHHhc
Q 012284 215 NWDWFINLNAADYPLIKQDDLLHILSY 241 (467)
Q Consensus 215 ~wDyfinLSgsDyPLkT~ddI~~~ls~ 241 (467)
++|+++++. .|-|+.+.+.|...++.
T Consensus 135 ~~d~Vlil~-gD~PlI~~~tI~~li~~ 160 (293)
T PLN02917 135 KYDIVVNIQ-GDEPLIEPEIIDGVVKA 160 (293)
T ss_pred CCCEEEEec-CCcCCCCHHHHHHHHHH
Confidence 578776666 69999999998888764
No 61
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=26.45 E-value=4.5e+02 Score=23.12 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=53.5
Q ss_pred EEEecCCCHHHHHHHHHHHcC--CCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHHH
Q 012284 125 LISGSAGDAARIVRLLHAVYH--PKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISST 202 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLyh--P~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~At 202 (467)
+|.++. ..+.++++|.++.. ..+.=+|=+|-.+++...+.+..+.+. .....+++... . .|+....+.
T Consensus 2 vip~~n-~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~----~~~~~~~~~~~-~----~~~~~~~~~ 71 (182)
T cd06420 2 IITTYN-RPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQ----FPIPIKHVWQE-D----EGFRKAKIR 71 (182)
T ss_pred EEeecC-ChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhh----cCCceEEEEcC-C----cchhHHHHH
Confidence 567776 77899999999953 122333456766665544444433211 01233444332 1 122222222
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhc
Q 012284 203 LHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSY 241 (467)
Q Consensus 203 L~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~ 241 (467)
-.+++.+ .-+|++.|.+.|.| +.+-|...+..
T Consensus 72 n~g~~~a-----~g~~i~~lD~D~~~--~~~~l~~~~~~ 103 (182)
T cd06420 72 NKAIAAA-----KGDYLIFIDGDCIP--HPDFIADHIEL 103 (182)
T ss_pred HHHHHHh-----cCCEEEEEcCCccc--CHHHHHHHHHH
Confidence 3344433 34899999999987 44555555543
No 62
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=25.97 E-value=4.9e+02 Score=23.38 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=53.8
Q ss_pred EEEecCCCHHHHHHHHHHHcC---C-CCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHH
Q 012284 125 LISGSAGDAARIVRLLHAVYH---P-KNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSIS 200 (467)
Q Consensus 125 LIlahk~d~~~l~RLL~aLyh---P-~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~ 200 (467)
+|-+++ +.+.+.++|+++.. | .++-+|=||..+++.-.+.++. ....|.+... ..++|-+ .
T Consensus 2 vIp~~n-e~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~---------~~~~~~~~~~---~~~~gk~--~ 66 (183)
T cd06438 2 LIPAHN-EEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA---------AGATVLERHD---PERRGKG--Y 66 (183)
T ss_pred EEeccc-hHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH---------cCCeEEEeCC---CCCCCHH--H
Confidence 566777 77889999998842 3 2333455666665543322221 1122333221 2334433 3
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHh
Q 012284 201 STLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 201 AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls 240 (467)
|.-.+++.+.....+.||++.+-+.+.|- .+.|.+...
T Consensus 67 aln~g~~~a~~~~~~~d~v~~~DaD~~~~--p~~l~~l~~ 104 (183)
T cd06438 67 ALDFGFRHLLNLADDPDAVVVFDADNLVD--PNALEELNA 104 (183)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCCCCC--hhHHHHHHH
Confidence 43456666543345689999999888874 444444433
No 63
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.81 E-value=34 Score=28.36 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=16.4
Q ss_pred ecCCceeccchHHHHHHHh
Q 012284 222 LNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 222 LSgsDyPLkT~ddI~~~ls 240 (467)
|-|.|||++++.+|...|-
T Consensus 16 ~k~a~fPInn~~eL~~ALP 34 (80)
T COG4746 16 LKGADFPINNPEELVAALP 34 (80)
T ss_pred HccCCCCCCCHHHHHHhcc
Confidence 3468999999999999984
No 64
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.73 E-value=4.6e+02 Score=23.04 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=50.4
Q ss_pred EEEEecCCCHHHHHHHHHHHcCC--CCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHHH
Q 012284 124 YLISGSAGDAARIVRLLHAVYHP--KNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSISS 201 (467)
Q Consensus 124 YLIlahk~d~~~l~RLL~aLyhP--~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~A 201 (467)
.+|.+++ ..+.+.++|..|... .+.=+|=+|..+.+.....++++. .. .+.+... ..+|. ..|
T Consensus 2 ivi~~~n-~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~------~~--~~~~~~~----~~~g~--~~a 66 (202)
T cd06433 2 IITPTYN-QAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYE------DK--ITYWISE----PDKGI--YDA 66 (202)
T ss_pred EEEeccc-hHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhH------hh--cEEEEec----CCcCH--HHH
Confidence 3566777 778999999988421 223356678777666555454331 11 2344332 22333 333
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCceecc
Q 012284 202 TLHGASILLKLSKNWDWFINLNAADYPLI 230 (467)
Q Consensus 202 tL~~~~~lL~~~~~wDyfinLSgsDyPLk 230 (467)
.-.+++.+ .-||++.|.+.|.+..
T Consensus 67 ~n~~~~~a-----~~~~v~~ld~D~~~~~ 90 (202)
T cd06433 67 MNKGIALA-----TGDIIGFLNSDDTLLP 90 (202)
T ss_pred HHHHHHHc-----CCCEEEEeCCCcccCc
Confidence 33444432 3489999999998764
No 65
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.24 E-value=4.9e+02 Score=23.72 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=52.5
Q ss_pred EEEEEecCCCHHHHHHHHHHHcCC--CCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchHHH
Q 012284 123 AYLISGSAGDAARIVRLLHAVYHP--KNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSIS 200 (467)
Q Consensus 123 AYLIlahk~d~~~l~RLL~aLyhP--~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~ 200 (467)
..+|.+|+ ..+.+.++|+.|..- .+.-+|=+|..+.+.....++ . .+++++... .|.+.
T Consensus 2 svii~~~n-~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~----------~-~~~~~~~~~-----~g~~~-- 62 (221)
T cd02522 2 SIIIPTLN-EAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIAR----------S-AGVVVISSP-----KGRAR-- 62 (221)
T ss_pred EEEEEccC-cHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHh----------c-CCeEEEeCC-----cCHHH--
Confidence 45677777 777888888887521 234456678777654332221 2 566666532 23321
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHh
Q 012284 201 STLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILS 240 (467)
Q Consensus 201 AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls 240 (467)
|--.+++.+ .-+|++.+.+.++| +.+.+...+.
T Consensus 63 a~n~g~~~a-----~~~~i~~~D~D~~~--~~~~l~~l~~ 95 (221)
T cd02522 63 QMNAGAAAA-----RGDWLLFLHADTRL--PPDWDAAIIE 95 (221)
T ss_pred HHHHHHHhc-----cCCEEEEEcCCCCC--ChhHHHHHHH
Confidence 111233222 24899999999988 4555555443
No 66
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=25.18 E-value=3.2e+02 Score=28.07 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHH-cCCCCeEEE-EEcC---CC--ChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCch-HHHHHH
Q 012284 132 DAARIVRLLHAV-YHPKNQYLL-HLDQ---SA--PQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGST-SISSTL 203 (467)
Q Consensus 132 d~~~l~RLL~aL-yhP~n~y~I-HvD~---ka--~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S-~V~AtL 203 (467)
+++||..++..+ ..|+..++| |.-. +. ....++.|..+. ..+||.+= -...+.+++.+ -++...
T Consensus 145 ~~~ql~~~i~l~~~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~la-------~~pNv~~K-lSG~~~~~~~~w~~~~v~ 216 (279)
T COG3618 145 DPHQLPDLIPLALKAPDVNFVLDHCGRPDIKINLEDPWKAALARLA-------RRPNVWAK-LSGVYAYSDESWTVEDVR 216 (279)
T ss_pred ChhhhHHHHHHHhhCCCCCEEeccCCCCCccccccCHHHHHHHHHH-------hCCCeEEE-EeeecccccCCCCHHHHH
Confidence 556676666655 467555544 3322 21 234566676653 67888762 12334555555 444444
Q ss_pred HHHHHHHhcCCCCcEEEEecCCceeccchH
Q 012284 204 HGASILLKLSKNWDWFINLNAADYPLIKQD 233 (467)
Q Consensus 204 ~~~~~lL~~~~~wDyfinLSgsDyPLkT~d 233 (467)
--++.+.+ ...||.+|- |||||..+..
T Consensus 217 p~~e~~i~-~fg~dR~vf--GSdwPv~~l~ 243 (279)
T COG3618 217 PYVEELIE-LFGWDRFVF--GSDWPVTSLE 243 (279)
T ss_pred HHHHHHHH-hcCccceEe--cCCCCccccc
Confidence 55555554 456888776 8899987654
No 67
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=24.16 E-value=6.6e+02 Score=25.64 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=10.4
Q ss_pred CCCcEEEEEEecC
Q 012284 118 APPSLAYLISGSA 130 (467)
Q Consensus 118 ~p~kiAYLIlahk 130 (467)
..+.+|||+.|..
T Consensus 12 ~kLshAYLfeG~n 24 (263)
T PRK06581 12 NKLYNSWLIEAEN 24 (263)
T ss_pred CcchheeeEeCCC
Confidence 3578999999866
No 68
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.09 E-value=74 Score=27.31 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=9.3
Q ss_pred chHHHHHHHHHHHHHHH
Q 012284 63 TRSVLLTTLFFSLLFLV 79 (467)
Q Consensus 63 ~~~~~~~~~~~~~~~~~ 79 (467)
.|.+|+++++|.++||+
T Consensus 3 SK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLI 19 (95)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45555555555555555
No 69
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=23.49 E-value=6.5e+02 Score=24.44 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=56.6
Q ss_pred EEEEEEecCC-CHHHHHHHHHHHc--CCCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceeccCCchH
Q 012284 122 LAYLISGSAG-DAARIVRLLHAVY--HPKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTS 198 (467)
Q Consensus 122 iAYLIlahk~-d~~~l~RLL~aLy--hP~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~ 198 (467)
.||+-++... -...+.-++..|- +++..++|+++...+.+.++.|+... ...-.|..+.........+-..
T Consensus 1 ~ay~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~------~~~~~v~~i~~~~~~~~~~~~~ 74 (240)
T cd02537 1 EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVG------WIVREVEPIDPPDSANLLKRPR 74 (240)
T ss_pred CEEEEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcC------CEEEecCccCCcchhhhccchH
Confidence 3777776642 2345555555552 34555667788777777777776431 0111111121111110011112
Q ss_pred HHHHH-HHHHHHHhcCCCCcEEEEecCCceeccchHHHHHH
Q 012284 199 ISSTL-HGASILLKLSKNWDWFINLNAADYPLIKQDDLLHI 238 (467)
Q Consensus 199 V~AtL-~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ 238 (467)
..++. ++...-+ .++|.++.|.+.-+.+.+.++|.+.
T Consensus 75 ~~~~~~kl~~~~l---~~~drvlylD~D~~v~~~i~~Lf~~ 112 (240)
T cd02537 75 FKDTYTKLRLWNL---TEYDKVVFLDADTLVLRNIDELFDL 112 (240)
T ss_pred HHHHhHHHHhccc---cccceEEEEeCCeeEccCHHHHhCC
Confidence 22222 2221111 3699999999999999988887654
No 70
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=23.05 E-value=6.4e+02 Score=26.10 Aligned_cols=26 Identities=38% Similarity=0.449 Sum_probs=15.9
Q ss_pred CCCcEEEEEEecCCCH--HHHHHHHHHH
Q 012284 118 APPSLAYLISGSAGDA--ARIVRLLHAV 143 (467)
Q Consensus 118 ~p~kiAYLIlahk~d~--~~l~RLL~aL 143 (467)
..+.+|||+.|..|-+ .....+.++|
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHH
Confidence 3478899999877643 2334444444
No 71
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=23.00 E-value=3.8e+02 Score=27.89 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=50.1
Q ss_pred CCcEEEEEEecCCCHH-------------------------HHHHHHHHHcCCCCeEEEEEcCC-C--ChhHHHHHHHhh
Q 012284 119 PPSLAYLISGSAGDAA-------------------------RIVRLLHAVYHPKNQYLLHLDQS-A--PQAERDSLAVTI 170 (467)
Q Consensus 119 p~kiAYLIlahk~d~~-------------------------~l~RLL~aLyhP~n~y~IHvD~k-a--~~~~r~~L~~~v 170 (467)
.+.+|||+.|-.|-+. .-.|++.+-.|||-.+ |--+.+ . ..++-.++.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~-i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYT-LTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEE-EecccccccCCHHHHHHHHHHH
Confidence 4788999988766322 1224555556777444 333322 2 233333344333
Q ss_pred hcccccccCCCeEEeCccceeccCCchHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 012284 171 ESVPVFRAAQNVDVIGKADFSYPAGSTSISSTLHGASILLKLSKNWDWFINLNAA 225 (467)
Q Consensus 171 ~~~~~~~~~~NV~vv~kr~~V~WgG~S~V~AtL~~~~~lL~~~~~wDyfinLSgs 225 (467)
...|. ...-.|.++...+ .|-.+.-+++=-.|++.++..+||+++.+
T Consensus 101 ~~~~~-~g~~kV~iI~~ae-------~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 101 YEHAR-LGGAKVVWLPDAA-------LLTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred hhccc-cCCceEEEEcchH-------hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 22221 1122344544433 44444444444445667788888888864
No 72
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=22.76 E-value=6.2e+02 Score=23.47 Aligned_cols=104 Identities=7% Similarity=0.073 Sum_probs=57.0
Q ss_pred EEEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChhH-HHHHHHhhhcccccccCCCeEEeCccceeccCCchHH
Q 012284 124 YLISGSAGDAARIVRLLHAVYH---PKNQYLLHLDQSAPQAE-RDSLAVTIESVPVFRAAQNVDVIGKADFSYPAGSTSI 199 (467)
Q Consensus 124 YLIlahk~d~~~l~RLL~aLyh---P~n~y~IHvD~ka~~~~-r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~WgG~S~V 199 (467)
.+|-+|+.+++.|.++|+.|.. |+ .=+|=+|..+.+.. ...++.+.+. ...++.++.... ..|+- .
T Consensus 2 iiip~~ne~~~~l~~~l~sl~~q~~~~-~eiiVvdd~s~D~t~~~~i~~~~~~-----~~~~i~~i~~~~--~~G~~--~ 71 (236)
T cd06435 2 IHVPCYEEPPEMVKETLDSLAALDYPN-FEVIVIDNNTKDEALWKPVEAHCAQ-----LGERFRFFHVEP--LPGAK--A 71 (236)
T ss_pred eeEeeCCCcHHHHHHHHHHHHhCCCCC-cEEEEEeCCCCchhHHHHHHHHHHH-----hCCcEEEEEcCC--CCCCc--h
Confidence 3567888456889999888853 33 33466676655443 2334433321 124676664321 22331 1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecCCceeccchHHHHHHHhcC
Q 012284 200 SSTLHGASILLKLSKNWDWFINLNAADYPLIKQDDLLHILSYM 242 (467)
Q Consensus 200 ~AtL~~~~~lL~~~~~wDyfinLSgsDyPLkT~ddI~~~ls~~ 242 (467)
.|.-.+++.+. .+.||++.|-+.+. .+.+.|.+.++.+
T Consensus 72 ~a~n~g~~~a~---~~~d~i~~lD~D~~--~~~~~l~~l~~~~ 109 (236)
T cd06435 72 GALNYALERTA---PDAEIIAVIDADYQ--VEPDWLKRLVPIF 109 (236)
T ss_pred HHHHHHHHhcC---CCCCEEEEEcCCCC--cCHHHHHHHHHHh
Confidence 22233444331 34799999988875 4667776666543
No 73
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=22.71 E-value=5.6e+02 Score=26.58 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=11.5
Q ss_pred CCCcEEEEEEecCCC
Q 012284 118 APPSLAYLISGSAGD 132 (467)
Q Consensus 118 ~p~kiAYLIlahk~d 132 (467)
..+.+|||+.|.+|-
T Consensus 22 ~rl~hA~L~~G~~G~ 36 (319)
T PRK06090 22 GRIPGALLLQSDEGL 36 (319)
T ss_pred CCcceeEeeECCCCC
Confidence 347789999988764
No 74
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=20.67 E-value=7.8e+02 Score=25.80 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=53.8
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCC-----CCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccc--eeccC
Q 012284 122 LAYLISGSAGDAARIVRLLHAVYHP-----KNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKAD--FSYPA 194 (467)
Q Consensus 122 iAYLIlahk~d~~~l~RLL~aLyhP-----~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~--~V~Wg 194 (467)
++.+|++++ -++.++|.|++|..- ....+|--|.... +..+.++.+ ..+|.++.... ....|
T Consensus 2 ~PVlv~ayN-Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~-~~~~~v~~~---------~~~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIACN-RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE-EVADVAKSF---------GDGVTHIQHPPISIKNVN 70 (334)
T ss_pred cCEEEEecC-CHHHHHHHHHHHHhccccCCCceEEEEeCCCch-HHHHHHHhh---------ccccEEEEcccccccccC
Confidence 467888998 799999999999632 2334466777432 222222211 02344443211 11111
Q ss_pred ------C-chHHHHHHHHHHHHHhcCCCCcEEEEecCCceecc
Q 012284 195 ------G-STSISSTLHGASILLKLSKNWDWFINLNAADYPLI 230 (467)
Q Consensus 195 ------G-~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLk 230 (467)
+ ..+......++..++.. .+.+++|.|=+.+.|-.
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~-~~~~~vIILEDDl~~sP 112 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNL-FGYSFVIILEDDLDIAP 112 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHh-cCCCEEEEECCCCccCH
Confidence 2 22222233466677653 36899999998887543
No 75
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=20.26 E-value=9.2e+02 Score=24.50 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=61.5
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHcC----CCCeEEEEEcCCCChhHHHHHHHhhhcccccccCCCeEEeCccceecc
Q 012284 118 APPSLAYLISGSAGDAARIVRLLHAVYH----PKNQYLLHLDQSAPQAERDSLAVTIESVPVFRAAQNVDVIGKADFSYP 193 (467)
Q Consensus 118 ~p~kiAYLIlahk~d~~~l~RLL~aLyh----P~n~y~IHvD~ka~~~~r~~L~~~v~~~~~~~~~~NV~vv~kr~~V~W 193 (467)
..+++..+|-+++ ..+.|.++|+.+.. +...=+|-||..|.+.-.+.++++-. .......++.. . ..-
T Consensus 29 ~~~~vSVVIPayN-ee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~-----~v~~~~~~~~~-~-~~n 100 (306)
T PRK13915 29 AGRTVSVVLPALN-EEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGA-----RVVSREEILPE-L-PPR 100 (306)
T ss_pred CCCCEEEEEecCC-cHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcc-----hhhcchhhhhc-c-ccC
Confidence 4578999999998 77888888888852 22233456888777654433332100 00111111110 0 112
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCcEEEEecCCceecc--chHHHHHHHhcCCCCCcee
Q 012284 194 AGSTSISSTLHGASILLKLSKNWDWFINLNAADYPLI--KQDDLLHILSYMPKELNFV 249 (467)
Q Consensus 194 gG~S~V~AtL~~~~~lL~~~~~wDyfinLSgsDyPLk--T~ddI~~~ls~~~rg~NFI 249 (467)
.|.+ .|...+++.+ +-||++.+.+.+.+.. -...+...|.. +.+..++
T Consensus 101 ~Gkg--~A~~~g~~~a-----~gd~vv~lDaD~~~~~p~~l~~l~~~l~~-~~~~~~V 150 (306)
T PRK13915 101 PGKG--EALWRSLAAT-----TGDIVVFVDADLINFDPMFVPGLLGPLLT-DPGVHLV 150 (306)
T ss_pred CCHH--HHHHHHHHhc-----CCCEEEEEeCccccCCHHHHHHHHHHHHh-CCCceEE
Confidence 3332 3333344332 3489999999886433 34566666642 2344444
Done!