Query 012286
Match_columns 466
No_of_seqs 487 out of 1286
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 06:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 5.5E-41 1.9E-45 321.9 24.0 390 5-429 32-432 (451)
2 3o7q_A L-fucose-proton symport 100.0 7.4E-40 2.5E-44 312.9 24.4 359 5-418 30-420 (438)
3 4gc0_A D-xylose-proton symport 100.0 1.5E-39 5.2E-44 315.3 15.8 420 6-451 17-482 (491)
4 2gfp_A EMRD, multidrug resista 100.0 3.8E-38 1.3E-42 294.6 18.2 354 5-415 4-361 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 6.3E-35 2.1E-39 282.9 21.7 415 7-427 19-468 (491)
6 2cfq_A Lactose permease; trans 100.0 4E-32 1.4E-36 256.9 10.4 361 16-425 22-394 (417)
7 2xut_A Proton/peptide symporte 100.0 4.1E-30 1.4E-34 251.1 18.2 169 7-175 18-198 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 2.7E-14 9.4E-19 136.2 11.4 169 8-176 259-434 (451)
9 2cfq_A Lactose permease; trans 99.5 1.2E-13 4E-18 130.3 9.4 146 33-178 256-402 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.4 8.3E-13 2.8E-17 127.4 12.2 173 249-428 13-194 (491)
11 3o7q_A L-fucose-proton symport 99.4 4.1E-12 1.4E-16 120.7 13.2 150 252-408 29-183 (438)
12 2xut_A Proton/peptide symporte 99.3 8.7E-12 3E-16 121.3 11.2 169 249-424 12-192 (524)
13 4gc0_A D-xylose-proton symport 99.3 2.1E-11 7.1E-16 117.6 12.4 160 21-181 297-468 (491)
14 2gfp_A EMRD, multidrug resista 99.2 1.2E-11 4.3E-16 114.7 5.3 159 255-421 6-165 (375)
15 2g9p_A Antimicrobial peptide l 50.9 3.9 0.00013 19.1 0.3 14 55-68 2-15 (26)
16 4dve_A Biotin transporter BIOY 24.5 2.7E+02 0.0092 22.2 7.4 26 42-67 99-124 (198)
17 1cmk_I CAMP-dependent protein 23.4 20 0.00069 17.6 0.3 10 60-69 9-18 (26)
18 2dw3_A Intrinsic membrane prot 23.2 1.3E+02 0.0044 19.5 3.9 30 153-182 31-60 (77)
19 3mkt_A Multi antimicrobial ext 22.4 4.3E+02 0.015 23.8 23.3 29 110-138 145-173 (460)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=5.5e-41 Score=321.95 Aligned_cols=390 Identities=13% Similarity=0.068 Sum_probs=303.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286 5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG 84 (466)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 84 (466)
.+.+..+.++++...+++..|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++.+++.++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 110 (451)
T 1pw4_A 32 GIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG 110 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 345566777888888889999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred h----hhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcc-hhHHHH
Q 012286 85 S----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFW 159 (466)
Q Consensus 85 ~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~ 159 (466)
+ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..| ||+.|+
T Consensus 111 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~ 190 (451)
T 1pw4_A 111 FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY 190 (451)
T ss_dssp HCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred hhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999888888 999999
Q ss_pred HhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhh
Q 012286 160 GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS 239 (466)
Q Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (466)
+.++++++..++.++..||+++..+.+++++... . ++ ++.+ .+++++. ..+ .
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~--~~~~----~~~~~~~-------~~~--~ 242 (451)
T 1pw4_A 191 MPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN----------D---YP--DDYN----EKAEQEL-------TAK--Q 242 (451)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC----------C-----------------------------CCT--H
T ss_pred HHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc----------c---cc--ccch----hhhhccc-------ccc--c
Confidence 9999888888777777777544322111110000 0 00 0000 0000000 000 0
Q ss_pred hhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhh--ccccc
Q 012286 240 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM--GATIS 316 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~ 316 (466)
...++.+++|.++...+..++..........+.|.|+++.++.++... .......++.+++.++.+++.||+ ++|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-- 320 (451)
T 1pw4_A 243 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-- 320 (451)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--
T ss_pred chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--
Confidence 114577889999999998888888888999999999999888886554 555677888999999999999999 777
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHH--hhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhccc
Q 012286 317 NAFKLLSAATFLGA-ISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV 393 (466)
Q Consensus 317 ~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~ 393 (466)
+.+.....+.. +..++.... .+.+......++.+++.+...+.......+.+|+++|+++.|+.+...+.+|..
T Consensus 321 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 397 (451)
T 1pw4_A 321 ---GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 397 (451)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence 55544444433 333333332 245555666666777666666666788889999999999999998776664778
Q ss_pred CccchhHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 012286 394 PSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV 429 (466)
Q Consensus 394 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 429 (466)
++|.+.|.+.|..| +...+++.+++.+++.++...
T Consensus 398 ~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 398 AASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999887 777777777666665554443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=7.4e-40 Score=312.89 Aligned_cols=359 Identities=17% Similarity=0.202 Sum_probs=289.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhh-
Q 012286 5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC- 83 (466)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~- 83 (466)
.+.+..+..+++....++..|.+.+++|+++.+.|++.+.+.+++.++++++|+++||+|||++++.+.++.+++.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3556677889998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --hhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhcc-CCcc-------
Q 012286 84 --GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLN------- 153 (466)
Q Consensus 84 --~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~g------- 153 (466)
++++|++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+. +..+
T Consensus 110 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 189 (438)
T 3o7q_A 110 PAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL 189 (438)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHH
T ss_pred hccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 888999999999999999999999999999999999999999999999999999999999999988 6554
Q ss_pred ------------------hhHHHHHhHHHHHHHHHHHHhhc-cccccCCCCCccccccccccccccccccCCCCcccccc
Q 012286 154 ------------------WRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI 214 (466)
Q Consensus 154 ------------------wr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (466)
||+.|++.+++.++..++.++.. ||.+++.+++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------------------- 243 (438)
T 3o7q_A 190 DKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-------------------------- 243 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS--------------------------
T ss_pred ccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc--------------------------
Confidence 99999988877766665544432 332111000000
Q ss_pred ccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhh-hhhhccccchhh-HHHhh
Q 012286 215 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA-GYNIYHMSNADM-MFGGV 292 (466)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~ 292 (466)
.++..+++++++++|.++...+..++..........+.|.| +++.++.++... .....
T Consensus 244 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 303 (438)
T 3o7q_A 244 --------------------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTG 303 (438)
T ss_dssp --------------------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred --------------------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHH
Confidence 00112356788899999999988888888888888999999 888878886554 55566
Q ss_pred hhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccC
Q 012286 293 TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK 372 (466)
Q Consensus 293 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (466)
..++.+++.++.+++.||++|| +.+..+..+..+..++....++.+. .....+.+++.+...+.......+.+|
T Consensus 304 ~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 377 (438)
T 3o7q_A 304 TMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLG 377 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCG
T ss_pred HHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7788899999999999999998 6666666666665555555544443 334466667777777777777788888
Q ss_pred CchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHH
Q 012286 373 PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS 418 (466)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 418 (466)
++ ++++.++.. .... |..++|.+.|.+.|..|++...+.+...
T Consensus 378 ~~-~~~~~~~~~-~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 420 (438)
T 3o7q_A 378 QD-TKYGSSFIV-MTII-GGGIVTPVMGFVSDAAGNIPTAELIPAL 420 (438)
T ss_dssp GG-HHHHHHHHH-HTTH-HHHHHHHHHHHHHHHHTSSGGGGHHHHH
T ss_pred cc-ccchhhHHH-HHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 66 888888875 4444 8889999999999988756666665433
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.5e-39 Score=315.33 Aligned_cols=420 Identities=14% Similarity=0.089 Sum_probs=270.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccccc--------cccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHH
Q 012286 6 VKELAMIKEYVLLVAGFIHGSCRGDFKL--------NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT 77 (466)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 77 (466)
.++-.+++|||...++..+|.+.++++. ++.+.|++.+++.+|..++++++|+++||+|||+++.++.+++.
T Consensus 17 a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~ 96 (491)
T 4gc0_A 17 ATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFF 96 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4556789999999999999998887743 34567899999999999999999999999999999999999999
Q ss_pred HHHHhhh------------------hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhh
Q 012286 78 FATAGCG------------------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA 139 (466)
Q Consensus 78 ~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 139 (466)
+++++++ +++|+++++++|+++|++.|...+..+.+++|+.|+++|++..++.+.+..+|.+
T Consensus 97 i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~ 176 (491)
T 4gc0_A 97 ISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL 176 (491)
T ss_dssp HHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence 9999988 4789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccC--------CcchhHHHHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccc
Q 012286 140 LGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVS 211 (466)
Q Consensus 140 ~g~~~~~~l~~--------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (466)
+++.++..+.. ..+||..+.+..+..++..+. .+..||+++....+++.+...+.. ++....+. .+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peSp~~L~~~~~~~~a~~~l--~~~~~~~~---~~ 250 (491)
T 4gc0_A 177 LVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLML-LYTVPESPRWLMSRGKQEQAEGIL--RKIMGNTL---AT 250 (491)
T ss_dssp HHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHH-GGGSCCCHHHHHHTTCHHHHHHHH--HHHHHHHH---HH
T ss_pred hhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhh-hhcCCCChHHHHHcCchhHHHHhH--HHhcCCch---hH
Confidence 99988766543 235888888887766655444 344587765432221111110000 00000000 00
Q ss_pred cccccchhhhccccccccchhhhhhhhhhhHHhhhchhHHHH-HHHHHHHHHHHhhhhHhhhhhhhhhhccccchhhHHH
Q 012286 212 EDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV-NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG 290 (466)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (466)
++..+..+.. ...+.. ......++.+.... .....+......+....|.|.+.+.....+.......
T Consensus 251 ~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (491)
T 4gc0_A 251 QAVQEIKHSL-----------DHGRKT-GGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQT 318 (491)
T ss_dssp HHHHHHHHHH-----------HHHHHH-TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHH-----------Hhhhhh-hhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHH
Confidence 0000000000 000000 01112233333333 3333344444556666777777666444333333445
Q ss_pred hhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHH---H-hhHHHHHHHHHHHHHHHHhcCccc-ee
Q 012286 291 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---L-SSLYGFLALFTVGELLVFATQAPV-NY 365 (466)
Q Consensus 291 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~-~~ 365 (466)
.+..+..+++.++++++.||+||| +.+........+..+.... . ...+..+....+...+.+....+. +.
T Consensus 319 ~~~~~~~~~~~~~~~~l~dr~Grr-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
T 4gc0_A 319 IIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWV 393 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSH-----HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc-----chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 566788889999999999999999 5554444443333322211 1 122333333333334444444443 45
Q ss_pred eeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcch-----hhHHHHHHHHHHHHHHHHHHHHHHHhhc-cccc
Q 012286 366 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN-----NWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKF 439 (466)
Q Consensus 366 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 439 (466)
+..|.+|++.|+++.|+.+...++ ++++++.+.+.+.+... +....+++.+++.+++.++. ..+.|| |+++
T Consensus 394 ~~~E~fPt~~R~~~~g~~~~~~~~-~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~--~~~~PETkg~t 470 (491)
T 4gc0_A 394 LLSEIFPNAIRGKALAIAVAAQWL-ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM--WKFVPETKGKT 470 (491)
T ss_dssp HHHHSSCTTTHHHHHHHHHHHHHH-HHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HHHCCCCTTCC
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HheecCCCCCC
Confidence 667888889999999999888887 77778888877765321 12234455444443333322 234565 8899
Q ss_pred cccccccccccc
Q 012286 440 NEDGENQISLDS 451 (466)
Q Consensus 440 ~~~~~~~~~~~~ 451 (466)
.||.++..+++.
T Consensus 471 Leei~~~f~~~~ 482 (491)
T 4gc0_A 471 LEELEALWEPET 482 (491)
T ss_dssp HHHHGGGTC---
T ss_pred HHHHHHHhCCCC
Confidence 988887665443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=3.8e-38 Score=294.59 Aligned_cols=354 Identities=14% Similarity=0.056 Sum_probs=282.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhh
Q 012286 5 GVKELAMIKEYVLLVAGFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG 84 (466)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 84 (466)
.+.+..+..+++...+.+..|.+.+++|.|+++.+++.+.+.++..++++++|+++||+|||+++..+.++..++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHH
Q 012286 85 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL 164 (466)
Q Consensus 85 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~ 164 (466)
+++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+||+.|++.+++
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999887
Q ss_pred HHHHHHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHh
Q 012286 165 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV 244 (466)
Q Consensus 165 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (466)
.++..+..++..||+++..+++ ++ ..+++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~--~~-----------------------------------------------~~~~~~~ 194 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVDAPR--TR-----------------------------------------------LLTSYKT 194 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTTCCC--CC-----------------------------------------------TTTCSTH
T ss_pred HHHHHHHHHHHCcccCCCCccc--cc-----------------------------------------------HHHHHHH
Confidence 7766654444555533221000 00 0123456
Q ss_pred hhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHH
Q 012286 245 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS 323 (466)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 323 (466)
.+++|.++...+..++..........+.|.|+++..+.++... .......++.+++.++.+++.||.+++ ....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~ 269 (375)
T 2gfp_A 195 LFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQS 269 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH-----HHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 7788999988888888888888899999999998888775544 444566777788888888888887763 2222
Q ss_pred HHH-HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhH
Q 012286 324 AAT-FLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG 400 (466)
Q Consensus 324 ~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g 400 (466)
... ............ .++.+...+...+.+++.+...+.......+..| ++|+++.|+.+...+. |..++|.+.|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~-g~~~~~~~~g 347 (375)
T 2gfp_A 270 VICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNI-GSGVLASLSA 347 (375)
T ss_dssp HHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHH-HHHCCSTTCT
T ss_pred HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHH-HHHHHHHHHH
Confidence 211 111111111111 2345555566677778888888888888888887 8999999999887777 8899999999
Q ss_pred HhhhcchhhHHHHHH
Q 012286 401 VLQDHVNNWRKTTLA 415 (466)
Q Consensus 401 ~l~~~~g~~~~~~~~ 415 (466)
.+.+..+ +...+..
T Consensus 348 ~l~~~~~-~~~~~~~ 361 (375)
T 2gfp_A 348 MLPQTGQ-GSLGLLM 361 (375)
T ss_dssp HHHHHHH-HHHHHHH
T ss_pred HHhcCCc-ccHHHHH
Confidence 9987544 6555544
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=6.3e-35 Score=282.87 Aligned_cols=415 Identities=9% Similarity=-0.039 Sum_probs=268.4
Q ss_pred HHHHHHHHHHHHHH-hhhhhccccc-----ccccccchhHHHHHHHHHHHhhhhhhhhhhcc-cCCchhhHhHHHHHHHH
Q 012286 7 KELAMIKEYVLLVA-GFIHGSCRGD-----FKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFA 79 (466)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~~i~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~ 79 (466)
....+...+..... ....+.+.++ +|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~ 98 (491)
T 4aps_A 19 FMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLG 98 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 33445555554444 3333444444 99999999999999999999999999999999 89999999999999999
Q ss_pred HHhhhhhhhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCC--chhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHH
Q 012286 80 TAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYA 157 (466)
Q Consensus 80 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~ 157 (466)
.+++++++|++.++++|+++|++.+...+...++++|++|+++ |+.++++++.+.++|..++|.+++.+.+..|||+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 178 (491)
T 4aps_A 99 HIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVA 178 (491)
T ss_dssp HHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999999999999999999999999999999999998 77788889999999999999999999998999999
Q ss_pred HHHhHHHHHHHHHHHHhhccccccCCCCCccccccccccccccccc----------------cCCCCccccccccchhhh
Q 012286 158 FWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA----------------SNLNDHVSEDISDQASER 221 (466)
Q Consensus 158 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 221 (466)
|++.++..++..++.++..|+..++..++++.+.. .++..+..+. .....+.++.........
T Consensus 179 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (491)
T 4aps_A 179 FSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLA-PEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVA 257 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCS-HHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccccccCCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHH
Confidence 99998877766666555544433221111110000 0000000000 000000000000000000
Q ss_pred ccccccccchhhhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhccccc-hhhHHHhhhhhhcccc
Q 012286 222 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVG 300 (466)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 300 (466)
..... .......++......+..+....+...+...+..........+.|.|.++..+.+. ..........+..+++
T Consensus 258 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (491)
T 4aps_A 258 IAIPV--FYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLY 335 (491)
T ss_dssp HHHHH--HHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHH
T ss_pred HHHHH--HHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHH
Confidence 00000 00000000000000111122233444445555556666667788888888777663 2334445667777888
Q ss_pred chhhhhhHhhhcccccchhHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHhcCccceeeeeccc
Q 012286 301 TISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---------SSLYGFLALFTVGELLVFATQAPVNYVCLHSV 371 (466)
Q Consensus 301 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (466)
.++.+++.||++||+......+..+..+..+........ .+.+.......+.+++.+...+.......+..
T Consensus 336 ~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 415 (491)
T 4aps_A 336 TPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA 415 (491)
T ss_dssp HHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 899999999999985433233334444444433333222 14455666667777777777888888889999
Q ss_pred CCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHHHHHHHHHHHHHHHH
Q 012286 372 KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW 427 (466)
Q Consensus 372 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 427 (466)
|++.|+++.|+.+...+. |..++|.+.+.+.+.. +...+...+.+.+++.++.
T Consensus 416 p~~~~g~~~g~~~~~~~~-g~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 416 PKAFNSQMMSMWFLSSSV-GSALNAQLVTLYNAKS--EVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp TTTCSSSSTHHHHHHHHH-HHHHHHHHGGGGGGSS--TTHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHH
Confidence 999999999999877777 8899999998888753 4455655555544444333
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=4e-32 Score=256.89 Aligned_cols=361 Identities=11% Similarity=0.008 Sum_probs=232.7
Q ss_pred HHHHHhhhhhc-ccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHH---HhhhhhhhHH-
Q 012286 16 VLLVAGFIHGS-CRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW- 90 (466)
Q Consensus 16 ~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~~- 90 (466)
......+.+|. +++++|+|+.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. ....+++...
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343444554 667899999999999999999999999999999999999999999888776532 2223333221
Q ss_pred HHHHHHHHhhhcchhhhcchhhhhhccCCC--CCchhHHHHHHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHH
Q 012286 91 SIAICRMLVGVGEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF 168 (466)
Q Consensus 91 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~ 168 (466)
.+...+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALIL 180 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence 245677787777776665555666665543 346777888888999999999999998876 48999999887765443
Q ss_pred HHHHHhhccccccCCCCCccccccccccccccccccCCCCccccccccchhhhccccccccchhhhhhhhhhhHHhhhch
Q 012286 169 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE 248 (466)
Q Consensus 169 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (466)
.+.. +..|+++++. .++++ . ++ + ++++. ..+++++++++
T Consensus 181 ~~~~-~~~~~~~~~~--~~~~~---------------~-~~--~--------~~~~~------------~~~~~~~~~~~ 219 (417)
T 2cfq_A 181 AVLL-FFAKTDAPSS--ATVAN---------------A-VG--A--------NHSAF------------SLKLALELFRQ 219 (417)
T ss_dssp HHHS-CSSCCCCSCS--SCSSS---------------S-SS--S--------CCCCC------------CHHHHHHHTTC
T ss_pred HHHH-HHcCcccccc--ccccc---------------c-cc--c--------ccccc------------cHHHHHHHhcC
Confidence 3332 2223211100 00000 0 00 0 00000 01234567788
Q ss_pred hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhcccc---chhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHH
Q 012286 249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS---NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA 324 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 324 (466)
|.++...+..+.....+..+..+.|.|+.+.++.. .... ....+..++.+++.++.+++.||++|| +.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~ 294 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLL 294 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHH
Confidence 88877666655555555555567888877655422 1122 333455567788899999999999988 66655
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHH-HHHHHhhcccCccchhHHhh
Q 012286 325 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS-TVSIHIFGDVPSSPLVGVLQ 403 (466)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~g~~~~~~~~g~l~ 403 (466)
+..+..+..+.....++.+...+...+.++......+....+..|..|++.|+++.+.. +...+. |.+++|.+.|.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l-g~~~gp~l~G~l~ 373 (417)
T 2cfq_A 295 AGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL-AMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH-HHHHHTHHHHTHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH-HHHHhhhhHHHHH
Confidence 55554444333333344444444444444444444444556778888889999999984 555556 8888999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHH
Q 012286 404 DHVNNWRKTTLALTSIFFLAAG 425 (466)
Q Consensus 404 ~~~g~~~~~~~~~~~~~~~~~~ 425 (466)
|..| +...|.+.+++.+++.+
T Consensus 374 ~~~g-~~~~f~~~~~~~l~~~~ 394 (417)
T 2cfq_A 374 ESIG-FQGAYLVLGLVALGFTL 394 (417)
T ss_dssp HHSH-HHHHHHHHHHHHHHHHH
T ss_pred HhcC-cHHHHHHHHHHHHHHHH
Confidence 9776 66677666655444443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=4.1e-30 Score=251.08 Aligned_cols=169 Identities=12% Similarity=0.081 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHhh-hhhccccccc------ccccchhHHHHHHHHHHHhhhhhhhhhhccc-CCchhhHhHHHHHHH
Q 012286 7 KELAMIKEYVLLVAGF-IHGSCRGDFK------LNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTF 78 (466)
Q Consensus 7 ~~~~~~~~~~~~~~~~-~~~~i~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~ 78 (466)
.+..++..+....... ..+.+.+++| .++.+.+++.+.+.++..++++++|+++||+ |||+++..+.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4445555555544443 4445678899 9999999999999999999999999999999 999999999999999
Q ss_pred HHHhhhhhh-hHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHH---HHhhhhhhhhhhhhhhhhccCCcch
Q 012286 79 ATAGCGSSF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM---FYMCIPTGVALGYVYGGVVGSHLNW 154 (466)
Q Consensus 79 ~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~gw 154 (466)
+.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.+..||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (524)
T 2xut_A 98 GHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA 177 (524)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 999999999 999999999999999999999999999999999999876666 9999999999999999999988899
Q ss_pred hHHHHHhHHHHHHHHHHHHhh
Q 012286 155 RYAFWGEAILMLPFAVLAFVI 175 (466)
Q Consensus 155 r~~f~~~~~~~~~~~~~~~~~ 175 (466)
|+.|++.+++.++..+..++.
T Consensus 178 ~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 178 AVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999988776655554433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.53 E-value=2.7e-14 Score=136.24 Aligned_cols=169 Identities=9% Similarity=-0.077 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHhhhhhccccc-ccccccchhHHHHHHHHHHHhhhhhhhhhhccc--CCchhhHhHHHHHH-HHHHhh
Q 012286 8 ELAMIKEYVLLVAGFIHGSCRGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGVGLSVWT-FATAGC 83 (466)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~ 83 (466)
+..++.......+....|.+.++ +|.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (451)
T 1pw4_A 259 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 33444444444455555655555 899999999999999999999999999999999 99999988887776 677776
Q ss_pred hhh--hhHHHHHHHHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhh-hhhhhhhhhhhccCCcchhHHHHH
Q 012286 84 GSS--FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWG 160 (466)
Q Consensus 84 ~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~gwr~~f~~ 160 (466)
.+. ++.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||+..|++
T Consensus 339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 418 (451)
T 1pw4_A 339 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 418 (451)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 666 47788888889999998888888899999999999999999999999999 999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhc
Q 012286 161 EAILMLPFAVLAFVIK 176 (466)
Q Consensus 161 ~~~~~~~~~~~~~~~~ 176 (466)
.+++.++..++.++..
T Consensus 419 ~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 419 MIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988887776666553
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.46 E-value=1.2e-13 Score=130.32 Aligned_cols=146 Identities=8% Similarity=0.006 Sum_probs=125.7
Q ss_pred ccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhcchhhhcchhh
Q 012286 33 LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAP 112 (466)
Q Consensus 33 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 112 (466)
.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556688888888899999999999999999999999999988888888888888888888888888887777777889
Q ss_pred hhhccCCCCCchhHHHH-HHhhhhhhhhhhhhhhhhccCCcchhHHHHHhHHHHHHHHHHHHhhccc
Q 012286 113 FIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 178 (466)
Q Consensus 113 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~ 178 (466)
++.|.+|++.|+++.++ ++....+|..++|.+++.+.+..|++..|.+.++++++..++.++..||
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999 5888889999999999999988899999999988877777665555454
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.42 E-value=8.3e-13 Score=127.45 Aligned_cols=173 Identities=11% Similarity=0.049 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhh-----ccccchhh-HHHhhhhhhccccchhhhhhHhh-hcccccchhHH
Q 012286 249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-----YHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKL 321 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~ 321 (466)
+.++...+..++....++....+++.|+++. ++.+..+. ...+...++..++.++.|+++|| +||| +.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----~~ 87 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR-----PA 87 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----HH
Confidence 4566667777777788888888999999988 88886655 55677888999999999999999 8998 77
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCch--hhHHHHHHHHHHHhhcccCccchh
Q 012286 322 LSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL--RALSMAISTVSIHIFGDVPSSPLV 399 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~g~~~~~~~~ 399 (466)
+..+..+..+..++....++.+...+..++.+++.+...+....++.+.+|+++ |+.+.++.+...+. |..++|.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~ 166 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINL-GAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHH-HHHHHHHHH
Confidence 777777777777666667777777788888888888888888899999999887 77888888777777 889999999
Q ss_pred HHhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 012286 400 GVLQDHVNNWRKTTLALTSIFFLAAGIWF 428 (466)
Q Consensus 400 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 428 (466)
+.+.+..| |+..+++.+...+++.++..
T Consensus 167 ~~l~~~~g-~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 167 GAAQEAAG-YHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHSC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 99998876 88888876655554444433
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.37 E-value=4.1e-12 Score=120.66 Aligned_cols=150 Identities=9% Similarity=0.041 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHH
Q 012286 252 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA 330 (466)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 330 (466)
....+..+.............|.+ ++.++.+..+. ...+...++..++.++.|++.||+||| +.+..+..+..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~l~~~~~~~~ 102 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK-----AGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----HHHHHHHHHHH
Confidence 333444455555555566667764 45577776655 556778889999999999999999999 77777766666
Q ss_pred HHHHHH---HHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhh-hcc
Q 012286 331 ISCLTA---FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ-DHV 406 (466)
Q Consensus 331 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~-~~~ 406 (466)
+..++. ...++.+...+..++.+++.+...+....++.+..|+++|+++.++.+..... |.+++|.+.+.+. +..
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF-GAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH-HHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccc
Confidence 666555 55667788888888899998888888899999999999999999999877777 9999999999988 554
Q ss_pred hh
Q 012286 407 NN 408 (466)
Q Consensus 407 g~ 408 (466)
+.
T Consensus 182 ~~ 183 (438)
T 3o7q_A 182 PH 183 (438)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.30 E-value=8.7e-12 Score=121.31 Aligned_cols=169 Identities=12% Similarity=0.014 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhcc------ccchhh-HHHhhhhhhccccchhhhhhHhhh-cccccchhH
Q 012286 249 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH------MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFK 320 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~ 320 (466)
+.++...+..++.....+....++|.|+++..+ .++.+. ...+...++..++.++.|+++||+ ||| +
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----~ 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY-----N 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----H
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----H
Confidence 455666677777777788888899999988888 776554 555777888899999999999999 998 7
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHH---HHHHHHhhcccCcc
Q 012286 321 LLSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI---STVSIHIFGDVPSS 396 (466)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~g~~~~~ 396 (466)
.+..+..+..+..++....+ +.+...+..++.+++.+...+....++.+.+|+++|+++.+. .+...+. |..++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~~g~ 165 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF-GSFFAS 165 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH-HHHHHH
Confidence 77666666666666666666 777777777888888888888888999999999999876666 7666666 888999
Q ss_pred chhHHhhhcchhhHHHHHHHHHHHHHHH
Q 012286 397 PLVGVLQDHVNNWRKTTLALTSIFFLAA 424 (466)
Q Consensus 397 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 424 (466)
.+.+.+.+..| |+..+.+.+...++..
T Consensus 166 ~~~~~l~~~~g-~~~~f~~~~~~~~~~~ 192 (524)
T 2xut_A 166 LSMPLLLKNFG-AAVAFGIPGVLMFVAT 192 (524)
T ss_dssp HTSTHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHHHH
Confidence 99999988766 8777776665544433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.27 E-value=2.1e-11 Score=117.60 Aligned_cols=160 Identities=8% Similarity=-0.019 Sum_probs=120.8
Q ss_pred hhhhhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhcccCCchhhHhHHHHHHHHHHhhhhhh-----hHHHHHH-
Q 012286 21 GFIHGSCRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-----DFWSIAI- 94 (466)
Q Consensus 21 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~- 94 (466)
....|.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +...+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3445667777777777777777788888999999999999999999999999888888777665431 2222222
Q ss_pred HHHHhhhcchhhhcchhhhhhccCCCCCchhHHHHHHhhhhhhhhhhhhhhhhccC------CcchhHHHHHhHHHHHHH
Q 012286 95 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPF 168 (466)
Q Consensus 95 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~gwr~~f~~~~~~~~~~ 168 (466)
.-+..+.+. ...|....+.+|.+|.+.|++++++......+|..+++.+...+.+ ..++...|++.++++++.
T Consensus 377 ~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 455 (491)
T 4gc0_A 377 LFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 455 (491)
T ss_dssp HHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 222222232 2446678899999999999999999999999999988877665543 235667889999999999
Q ss_pred HHHHHhhcccccc
Q 012286 169 AVLAFVIKPLQLK 181 (466)
Q Consensus 169 ~~~~~~~~p~~~~ 181 (466)
.+..++++||++.
T Consensus 456 ~i~~~~~~PETkg 468 (491)
T 4gc0_A 456 ALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHCCCCTT
T ss_pred HHHHHheecCCCC
Confidence 9888889998753
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.18 E-value=1.2e-11 Score=114.72 Aligned_cols=159 Identities=14% Similarity=0.067 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhccccchhh-HHHhhhhhhccccchhhhhhHhhhcccccchhHHHHHHHHHHHHHH
Q 012286 255 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 333 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
.+..++............|.+.+ .++.++.+. ...+...++..++.++.|++.||+||| +.+..+..+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMAR-DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR-----PVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC-----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHH
Confidence 34445555555556666676554 467776554 555777888999999999999999998 55656666666666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCccceeeeecccCCchhhHHHHHHHHHHHhhcccCccchhHHhhhcchhhHHHH
Q 012286 334 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 413 (466)
......++.+...+...+.+++.+...+.......|..|+++|+++.++.+..... |..++|.+.+.+.+..+ |+..+
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~ 157 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILV-SPLLAPLIGGLLDTMWN-WRACY 157 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHH-HHHHHHHHHHHSSCHHH-HHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhcc-HHHHH
Confidence 66666677777777788888888888888888889999999999999999877777 88999999999988765 77777
Q ss_pred HHHHHHHH
Q 012286 414 LALTSIFF 421 (466)
Q Consensus 414 ~~~~~~~~ 421 (466)
.+.+...+
T Consensus 158 ~~~~~~~~ 165 (375)
T 2gfp_A 158 LFLLVLCA 165 (375)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=50.90 E-value=3.9 Score=19.15 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=10.9
Q ss_pred hhhhhhcccCCchh
Q 012286 55 IFASLAKSHNPFRL 68 (466)
Q Consensus 55 ~~g~l~dr~Grr~~ 68 (466)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788899999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=24.46 E-value=2.7e+02 Score=22.19 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCCch
Q 012286 42 SSAFMVGLLVASPIFASLAKSHNPFR 67 (466)
Q Consensus 42 ~s~~~~~~~~~~~~~g~l~dr~Grr~ 67 (466)
+.-|.+++.+++.+.|++.||..+++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~~ 124 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKITT 124 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccc
Confidence 45778888999999999999976443
No 17
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=23.36 E-value=20 Score=17.63 Aligned_cols=10 Identities=10% Similarity=-0.034 Sum_probs=7.7
Q ss_pred hcccCCchhh
Q 012286 60 AKSHNPFRLI 69 (466)
Q Consensus 60 ~dr~Grr~~l 69 (466)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5788888764
No 18
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=23.18 E-value=1.3e+02 Score=19.51 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=13.9
Q ss_pred chhHHHHHhHHHHHHHHHHHHhhccccccC
Q 012286 153 NWRYAFWGEAILMLPFAVLAFVIKPLQLKG 182 (466)
Q Consensus 153 gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~ 182 (466)
||-.++.+...+.++..-.+=.++||..+.
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 354555444443333333333445775544
No 19
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=22.42 E-value=4.3e+02 Score=23.80 Aligned_cols=29 Identities=3% Similarity=-0.397 Sum_probs=15.5
Q ss_pred hhhhhhccCCCCCchhHHHHHHhhhhhhh
Q 012286 110 AAPFIDDNAPVPQKTAWLSMFYMCIPTGV 138 (466)
Q Consensus 110 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 138 (466)
...........++|.+.....+....+-.
T Consensus 145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (460)
T 3mkt_A 145 LFQALRSFTDGMSLTKPAMVIGFIGLLLN 173 (460)
T ss_dssp HHHHHTTTTCTTSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 34444555666666666555555544433
Done!