Query 012287
Match_columns 466
No_of_seqs 246 out of 762
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 01:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12498 bZIP_C: Basic leucine 99.9 5.1E-27 1.1E-31 206.1 9.2 115 329-459 1-115 (115)
2 smart00338 BRLZ basic region l 99.3 8.8E-12 1.9E-16 98.5 9.4 62 259-320 2-63 (65)
3 PF00170 bZIP_1: bZIP transcri 99.3 1.8E-11 3.8E-16 96.6 9.2 62 259-320 2-63 (64)
4 KOG4005 Transcription factor X 99.2 1.2E-10 2.5E-15 114.1 11.9 78 260-337 67-144 (292)
5 KOG4343 bZIP transcription fac 99.2 1E-10 2.3E-15 124.2 10.3 71 255-325 274-344 (655)
6 PF07716 bZIP_2: Basic region 99.0 2.4E-09 5.3E-14 82.3 8.8 51 260-311 3-53 (54)
7 KOG3584 cAMP response element 99.0 1.2E-09 2.6E-14 109.5 7.2 60 256-315 285-344 (348)
8 KOG0709 CREB/ATF family transc 98.9 3.8E-09 8.3E-14 111.1 7.1 73 257-336 246-318 (472)
9 KOG0837 Transcriptional activa 98.1 1.3E-05 2.8E-10 80.0 8.7 50 260-309 203-253 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.0 1E-07 2.3E-12 80.5 -6.6 55 259-313 27-81 (92)
11 KOG4571 Activating transcripti 97.1 0.0039 8.5E-08 63.4 11.1 54 260-313 224-278 (294)
12 KOG4196 bZIP transcription fac 96.9 0.0074 1.6E-07 55.2 9.7 63 260-336 51-113 (135)
13 KOG3119 Basic region leucine z 96.7 0.0073 1.6E-07 60.5 8.5 46 265-310 197-242 (269)
14 TIGR02449 conserved hypothetic 96.6 0.022 4.8E-07 46.6 9.3 61 285-348 2-62 (65)
15 PF06005 DUF904: Protein of un 96.3 0.063 1.4E-06 44.5 10.6 61 283-343 4-64 (72)
16 KOG3863 bZIP transcription fac 96.0 0.013 2.9E-07 64.6 6.7 72 262-346 490-561 (604)
17 PF07989 Microtub_assoc: Micro 95.6 0.13 2.9E-06 42.8 9.4 61 285-345 2-70 (75)
18 PRK10884 SH3 domain-containing 94.8 0.4 8.6E-06 46.8 11.5 30 310-339 131-160 (206)
19 TIGR02449 conserved hypothetic 94.6 0.3 6.6E-06 40.0 8.7 56 283-338 7-62 (65)
20 PF06156 DUF972: Protein of un 94.5 0.18 4E-06 44.6 7.9 47 284-337 9-55 (107)
21 PRK13169 DNA replication intia 94.5 0.18 4E-06 44.9 7.9 47 284-330 9-55 (110)
22 TIGR02894 DNA_bind_RsfA transc 94.4 0.33 7.2E-06 46.0 9.6 57 291-347 98-154 (161)
23 PF02183 HALZ: Homeobox associ 94.2 0.14 3.1E-06 38.9 5.6 42 294-335 2-43 (45)
24 PF06156 DUF972: Protein of un 94.1 0.32 7E-06 43.1 8.5 43 283-332 15-57 (107)
25 PF08614 ATG16: Autophagy prot 94.1 1.3 2.8E-05 42.1 13.2 72 259-330 113-184 (194)
26 PF14197 Cep57_CLD_2: Centroso 93.4 0.83 1.8E-05 37.6 9.1 55 282-336 11-65 (69)
27 PRK13729 conjugal transfer pil 93.3 0.32 7E-06 52.8 8.5 49 283-331 76-124 (475)
28 PF08614 ATG16: Autophagy prot 92.8 0.73 1.6E-05 43.8 9.2 63 284-346 110-172 (194)
29 PRK13169 DNA replication intia 92.8 0.65 1.4E-05 41.5 8.2 52 286-337 4-55 (110)
30 PF07888 CALCOCO1: Calcium bin 92.8 2.2 4.7E-05 47.4 13.9 83 262-344 150-232 (546)
31 PRK10884 SH3 domain-containing 92.7 2 4.3E-05 42.0 12.3 52 283-334 118-169 (206)
32 PF13851 GAS: Growth-arrest sp 92.2 5 0.00011 38.8 14.2 86 259-344 69-169 (201)
33 PF06005 DUF904: Protein of un 92.1 2.5 5.4E-05 35.1 10.3 53 284-336 12-64 (72)
34 PRK11637 AmiB activator; Provi 92.0 3.4 7.4E-05 43.5 13.9 44 283-326 75-118 (428)
35 PF11559 ADIP: Afadin- and alp 91.8 2.8 6E-05 38.1 11.4 73 262-334 45-117 (151)
36 PF11559 ADIP: Afadin- and alp 91.8 6.3 0.00014 35.8 13.6 80 265-344 41-120 (151)
37 COG3074 Uncharacterized protei 91.3 1.5 3.3E-05 36.8 8.2 51 284-334 19-69 (79)
38 PF04899 MbeD_MobD: MbeD/MobD 90.8 3.8 8.3E-05 34.0 10.1 51 295-345 19-69 (70)
39 COG4467 Regulator of replicati 90.5 1.4 3E-05 39.7 7.7 49 288-336 6-54 (114)
40 PRK15422 septal ring assembly 90.4 3.8 8.2E-05 35.0 9.8 39 284-322 5-43 (79)
41 PF04156 IncA: IncA protein; 89.9 9.8 0.00021 35.4 13.3 72 272-343 119-190 (191)
42 KOG4005 Transcription factor X 89.6 6 0.00013 40.2 12.3 82 258-340 69-154 (292)
43 PF07106 TBPIP: Tat binding pr 89.4 2.8 6.2E-05 38.8 9.3 49 283-331 86-136 (169)
44 PF10224 DUF2205: Predicted co 88.5 2.4 5.3E-05 36.0 7.4 46 285-330 18-63 (80)
45 PRK11637 AmiB activator; Provi 88.4 11 0.00024 39.7 14.1 65 267-331 182-253 (428)
46 PRK15422 septal ring assembly 88.3 3.2 6.9E-05 35.5 7.9 51 284-334 19-69 (79)
47 PF09738 DUF2051: Double stran 88.3 8.3 0.00018 39.9 12.6 86 255-341 85-170 (302)
48 TIGR03752 conj_TIGR03752 integ 87.5 3.6 7.9E-05 44.9 9.9 61 284-344 74-135 (472)
49 PF11932 DUF3450: Protein of u 87.5 10 0.00022 37.3 12.3 39 281-319 54-92 (251)
50 PF04880 NUDE_C: NUDE protein, 87.4 0.96 2.1E-05 43.1 4.9 51 285-339 2-52 (166)
51 PF04102 SlyX: SlyX; InterPro 87.3 3.1 6.7E-05 33.8 7.2 48 283-330 4-51 (69)
52 PF05266 DUF724: Protein of un 87.2 14 0.0003 35.8 12.7 71 260-330 87-164 (190)
53 COG1579 Zn-ribbon protein, pos 87.2 17 0.00037 36.7 13.7 52 261-312 30-81 (239)
54 COG4467 Regulator of replicati 87.1 2.4 5.2E-05 38.2 6.9 51 283-333 8-60 (114)
55 COG4026 Uncharacterized protei 87.1 4.8 0.0001 40.6 9.7 46 283-328 135-180 (290)
56 PF10186 Atg14: UV radiation r 87.0 20 0.00043 34.9 13.9 8 326-333 127-134 (302)
57 PRK09039 hypothetical protein; 86.9 9.1 0.0002 39.9 12.1 54 285-338 132-185 (343)
58 COG3883 Uncharacterized protei 86.5 6.1 0.00013 40.3 10.3 70 278-347 33-103 (265)
59 PF10473 CENP-F_leu_zip: Leuci 86.5 25 0.00054 32.8 13.4 53 264-316 33-85 (140)
60 TIGR03495 phage_LysB phage lys 86.5 6.8 0.00015 36.3 9.7 71 284-354 27-97 (135)
61 PF09304 Cortex-I_coil: Cortex 86.4 11 0.00024 33.9 10.6 55 263-317 17-71 (107)
62 COG4942 Membrane-bound metallo 86.4 14 0.0003 40.1 13.3 73 262-334 38-110 (420)
63 PF13747 DUF4164: Domain of un 86.3 17 0.00037 31.2 11.5 71 260-330 9-79 (89)
64 PF09755 DUF2046: Uncharacteri 85.9 4.5 9.8E-05 42.1 9.2 54 286-339 23-76 (310)
65 PF15070 GOLGA2L5: Putative go 85.9 13 0.00028 42.0 13.4 57 267-323 106-186 (617)
66 PF12808 Mto2_bdg: Micro-tubul 85.8 2 4.3E-05 34.0 5.1 49 280-331 1-49 (52)
67 COG3074 Uncharacterized protei 85.7 11 0.00023 32.0 9.5 51 283-333 4-54 (79)
68 KOG1414 Transcriptional activa 85.2 0.044 9.6E-07 57.6 -5.7 53 257-309 149-205 (395)
69 PF10805 DUF2730: Protein of u 85.2 9.4 0.0002 33.5 9.6 62 282-343 34-97 (106)
70 PF06785 UPF0242: Uncharacteri 85.2 4.4 9.6E-05 42.8 8.7 55 277-331 121-175 (401)
71 PF12777 MT: Microtubule-bindi 85.2 4.4 9.6E-05 41.8 8.8 65 284-348 229-293 (344)
72 PF09726 Macoilin: Transmembra 85.1 16 0.00035 41.8 13.8 37 288-324 543-579 (697)
73 PF11932 DUF3450: Protein of u 85.0 22 0.00048 35.0 13.2 21 291-311 57-77 (251)
74 PF12325 TMF_TATA_bd: TATA ele 84.3 4.2 9E-05 36.9 7.2 12 322-333 72-83 (120)
75 PF12718 Tropomyosin_1: Tropom 84.0 8.8 0.00019 35.4 9.3 60 280-339 32-94 (143)
76 TIGR00219 mreC rod shape-deter 83.8 4 8.7E-05 41.4 7.7 35 291-325 67-105 (283)
77 PF11577 NEMO: NF-kappa-B esse 83.5 14 0.00031 30.6 9.4 62 287-348 3-68 (68)
78 PF08317 Spc7: Spc7 kinetochor 83.1 10 0.00022 38.9 10.4 58 283-340 209-266 (325)
79 PRK02119 hypothetical protein; 83.1 7.4 0.00016 32.3 7.6 29 283-311 9-37 (73)
80 COG2433 Uncharacterized conser 83.0 9.8 0.00021 43.0 10.7 65 282-346 435-502 (652)
81 PF04849 HAP1_N: HAP1 N-termin 83.0 10 0.00022 39.5 10.3 24 141-164 94-117 (306)
82 PF14662 CCDC155: Coiled-coil 83.0 8.3 0.00018 37.8 9.0 53 285-337 10-62 (193)
83 PF05377 FlaC_arch: Flagella a 82.9 8.7 0.00019 30.8 7.6 46 285-344 2-47 (55)
84 PF07106 TBPIP: Tat binding pr 82.8 6 0.00013 36.6 7.8 55 285-344 81-135 (169)
85 PF14197 Cep57_CLD_2: Centroso 82.6 4.8 0.00011 33.1 6.3 41 297-337 5-45 (69)
86 PHA03162 hypothetical protein; 82.5 3.6 7.9E-05 38.1 6.1 74 279-352 9-104 (135)
87 KOG1414 Transcriptional activa 82.0 0.6 1.3E-05 49.3 1.0 44 260-303 283-326 (395)
88 PF15294 Leu_zip: Leucine zipp 81.9 4.8 0.0001 41.3 7.4 45 288-332 130-174 (278)
89 COG4026 Uncharacterized protei 81.7 16 0.00035 37.0 10.7 54 282-335 141-194 (290)
90 PF14662 CCDC155: Coiled-coil 81.5 11 0.00025 36.9 9.4 44 290-333 8-51 (193)
91 PRK09039 hypothetical protein; 81.3 12 0.00026 39.0 10.2 48 283-330 137-184 (343)
92 PRK04406 hypothetical protein; 81.3 12 0.00027 31.2 8.4 40 284-330 12-51 (75)
93 PF12325 TMF_TATA_bd: TATA ele 81.2 14 0.00031 33.5 9.3 34 300-333 71-111 (120)
94 PLN02678 seryl-tRNA synthetase 81.1 34 0.00074 37.2 13.8 78 283-367 33-120 (448)
95 PF15035 Rootletin: Ciliary ro 80.8 15 0.00032 35.4 9.9 61 282-342 66-126 (182)
96 PF12329 TMF_DNA_bd: TATA elem 80.8 22 0.00048 29.5 9.6 57 286-342 8-64 (74)
97 PHA02562 46 endonuclease subun 80.7 30 0.00065 37.1 13.2 42 285-326 360-401 (562)
98 PF12329 TMF_DNA_bd: TATA elem 80.5 26 0.00057 29.0 10.0 63 280-342 9-71 (74)
99 PRK02119 hypothetical protein; 80.4 13 0.00029 30.8 8.2 49 284-332 3-51 (73)
100 PRK00295 hypothetical protein; 80.2 13 0.00028 30.4 8.0 29 283-311 5-33 (68)
101 KOG0288 WD40 repeat protein Ti 80.0 29 0.00063 37.8 12.5 28 281-308 46-73 (459)
102 PRK02793 phi X174 lysis protei 79.7 12 0.00025 31.0 7.6 28 283-310 8-35 (72)
103 PF05667 DUF812: Protein of un 79.6 15 0.00033 41.3 10.8 63 282-344 327-389 (594)
104 TIGR02894 DNA_bind_RsfA transc 79.2 17 0.00036 34.9 9.4 35 282-316 110-144 (161)
105 PRK04325 hypothetical protein; 79.1 12 0.00027 31.0 7.7 27 284-310 10-36 (74)
106 TIGR02169 SMC_prok_A chromosom 79.1 36 0.00078 39.3 13.9 9 69-77 121-129 (1164)
107 PRK13922 rod shape-determining 78.9 13 0.00029 36.7 9.3 32 294-325 73-107 (276)
108 PF15030 DUF4527: Protein of u 78.6 49 0.0011 33.9 13.0 87 258-344 11-98 (277)
109 PF09728 Taxilin: Myosin-like 78.6 18 0.0004 37.3 10.4 63 283-345 244-306 (309)
110 KOG1962 B-cell receptor-associ 78.5 7 0.00015 38.9 7.0 38 291-328 173-210 (216)
111 PRK10803 tol-pal system protei 78.5 15 0.00032 36.9 9.5 48 283-330 54-101 (263)
112 PRK00888 ftsB cell division pr 78.4 8.6 0.00019 33.8 6.9 39 302-340 32-70 (105)
113 PF04111 APG6: Autophagy prote 78.4 60 0.0013 33.6 14.0 69 280-348 61-136 (314)
114 PF02183 HALZ: Homeobox associ 78.2 9.6 0.00021 29.1 6.2 37 301-337 2-38 (45)
115 PF12718 Tropomyosin_1: Tropom 78.1 23 0.00049 32.7 9.8 52 283-334 14-65 (143)
116 COG1579 Zn-ribbon protein, pos 78.1 36 0.00079 34.4 12.0 59 280-338 86-144 (239)
117 PRK00736 hypothetical protein; 77.8 15 0.00033 30.0 7.7 29 283-311 5-33 (68)
118 PRK05431 seryl-tRNA synthetase 77.8 29 0.00063 37.2 12.0 74 284-363 29-112 (425)
119 PF09726 Macoilin: Transmembra 77.5 34 0.00074 39.3 13.0 21 290-310 460-480 (697)
120 PF07888 CALCOCO1: Calcium bin 77.4 51 0.0011 37.0 13.9 50 285-334 187-236 (546)
121 PF10211 Ax_dynein_light: Axon 77.4 40 0.00087 32.4 11.7 39 285-323 122-160 (189)
122 PF06810 Phage_GP20: Phage min 77.2 13 0.00029 34.7 8.2 14 284-297 35-48 (155)
123 PF06785 UPF0242: Uncharacteri 77.0 38 0.00082 36.2 12.1 73 261-337 74-160 (401)
124 PF02403 Seryl_tRNA_N: Seryl-t 77.0 46 0.001 28.4 12.2 78 267-344 7-100 (108)
125 PF10481 CENP-F_N: Cenp-F N-te 76.9 45 0.00097 34.7 12.3 60 287-346 57-130 (307)
126 PRK04406 hypothetical protein; 76.9 15 0.00033 30.7 7.6 52 285-346 6-57 (75)
127 KOG3119 Basic region leucine z 76.8 15 0.00033 37.1 9.1 56 283-338 194-249 (269)
128 PF03962 Mnd1: Mnd1 family; I 76.8 37 0.00079 32.7 11.2 68 278-345 78-155 (188)
129 PF05266 DUF724: Protein of un 76.5 66 0.0014 31.2 12.9 57 287-343 128-184 (190)
130 PHA03155 hypothetical protein; 76.1 16 0.00034 33.3 7.9 26 283-308 8-33 (115)
131 PF10186 Atg14: UV radiation r 76.1 65 0.0014 31.4 13.0 47 279-325 59-105 (302)
132 COG4942 Membrane-bound metallo 76.1 30 0.00064 37.6 11.4 71 269-339 38-108 (420)
133 PF10805 DUF2730: Protein of u 76.0 31 0.00067 30.3 9.7 54 284-337 43-98 (106)
134 PF05837 CENP-H: Centromere pr 75.9 25 0.00053 30.9 9.0 63 284-347 18-80 (106)
135 TIGR01843 type_I_hlyD type I s 75.8 37 0.0008 34.5 11.6 28 287-314 207-234 (423)
136 PF07558 Shugoshin_N: Shugoshi 75.5 3.1 6.8E-05 31.7 2.9 39 265-304 4-42 (46)
137 PF07407 Seadorna_VP6: Seadorn 75.4 11 0.00023 40.0 7.7 13 283-295 46-58 (420)
138 PF05278 PEARLI-4: Arabidopsis 75.4 50 0.0011 34.0 12.2 52 282-333 206-257 (269)
139 KOG0239 Kinesin (KAR3 subfamil 75.3 26 0.00056 40.0 11.3 83 285-367 243-328 (670)
140 PRK02793 phi X174 lysis protei 75.3 21 0.00046 29.5 8.0 45 286-330 4-48 (72)
141 KOG0982 Centrosomal protein Nu 74.9 55 0.0012 36.0 12.9 53 283-335 297-349 (502)
142 PRK04325 hypothetical protein; 74.8 21 0.00045 29.7 7.9 47 284-330 3-49 (74)
143 PF07798 DUF1640: Protein of u 74.7 17 0.00036 34.3 8.2 48 287-334 48-96 (177)
144 KOG0288 WD40 repeat protein Ti 74.3 9.8 0.00021 41.3 7.2 54 284-337 28-81 (459)
145 PF08647 BRE1: BRE1 E3 ubiquit 74.2 57 0.0012 28.1 12.2 65 265-329 6-70 (96)
146 PRK00846 hypothetical protein; 74.0 26 0.00055 29.8 8.2 41 283-330 13-53 (77)
147 smart00340 HALZ homeobox assoc 74.0 6.5 0.00014 30.2 4.2 26 307-332 8-33 (44)
148 PRK00888 ftsB cell division pr 73.7 14 0.0003 32.6 6.9 32 279-310 30-61 (105)
149 PF00769 ERM: Ezrin/radixin/mo 73.6 61 0.0013 32.4 12.2 53 288-340 66-118 (246)
150 PF07412 Geminin: Geminin; In 73.0 16 0.00034 36.1 7.7 47 297-347 125-171 (200)
151 TIGR02977 phageshock_pspA phag 73.0 49 0.0011 32.2 11.2 56 282-337 98-153 (219)
152 PF09730 BicD: Microtubule-ass 73.0 36 0.00079 39.3 11.7 47 292-338 99-148 (717)
153 PF07058 Myosin_HC-like: Myosi 72.8 11 0.00025 39.4 7.1 24 321-344 69-92 (351)
154 PF01166 TSC22: TSC-22/dip/bun 72.7 4.7 0.0001 32.8 3.4 29 298-326 15-43 (59)
155 PRK05431 seryl-tRNA synthetase 72.5 50 0.0011 35.4 12.1 54 291-344 29-92 (425)
156 PF04102 SlyX: SlyX; InterPro 72.3 24 0.00052 28.7 7.5 47 287-333 1-47 (69)
157 PF05812 Herpes_BLRF2: Herpesv 72.1 6.3 0.00014 35.9 4.5 72 281-352 1-94 (118)
158 PLN02939 transferase, transfer 72.0 1E+02 0.0022 37.0 15.2 36 309-344 224-259 (977)
159 PF07926 TPR_MLP1_2: TPR/MLP1/ 71.9 52 0.0011 29.6 10.4 22 316-337 103-124 (132)
160 TIGR02209 ftsL_broad cell divi 71.9 19 0.00042 29.3 7.0 36 297-332 24-59 (85)
161 PF04977 DivIC: Septum formati 71.9 20 0.00044 28.4 7.0 27 304-330 24-50 (80)
162 PRK00295 hypothetical protein; 71.7 34 0.00074 28.0 8.3 44 288-331 3-46 (68)
163 PF06419 COG6: Conserved oligo 71.7 57 0.0012 36.6 12.8 64 282-345 44-107 (618)
164 PF12711 Kinesin-relat_1: Kine 71.6 22 0.00047 30.9 7.4 41 294-334 21-67 (86)
165 smart00338 BRLZ basic region l 71.3 17 0.00036 28.7 6.3 33 305-337 27-59 (65)
166 PF04642 DUF601: Protein of un 71.2 4.7 0.0001 41.2 3.8 57 283-339 217-273 (311)
167 COG3883 Uncharacterized protei 71.2 34 0.00074 35.1 9.9 61 286-346 48-109 (265)
168 PF07926 TPR_MLP1_2: TPR/MLP1/ 71.2 71 0.0015 28.7 11.0 10 341-350 114-123 (132)
169 KOG1029 Endocytic adaptor prot 71.1 31 0.00066 40.5 10.4 8 323-330 442-449 (1118)
170 PRK00846 hypothetical protein; 71.1 28 0.0006 29.6 7.8 52 286-347 9-60 (77)
171 PF09730 BicD: Microtubule-ass 70.8 51 0.0011 38.2 12.2 48 285-332 71-118 (717)
172 KOG1103 Predicted coiled-coil 70.8 21 0.00046 38.3 8.6 67 271-337 226-292 (561)
173 KOG2077 JNK/SAPK-associated pr 70.7 14 0.0003 41.8 7.5 50 287-336 326-375 (832)
174 PF10174 Cast: RIM-binding pro 70.6 26 0.00056 40.7 10.0 64 279-342 297-360 (775)
175 COG2433 Uncharacterized conser 70.6 33 0.00072 39.0 10.4 62 283-344 443-507 (652)
176 PF13094 CENP-Q: CENP-Q, a CEN 70.6 54 0.0012 30.2 10.4 60 295-354 32-92 (160)
177 KOG0243 Kinesin-like protein [ 70.3 40 0.00087 40.4 11.5 58 266-323 414-481 (1041)
178 PF14915 CCDC144C: CCDC144C pr 70.2 52 0.0011 34.4 11.1 81 260-342 172-252 (305)
179 TIGR03319 YmdA_YtgF conserved 70.1 1E+02 0.0022 34.1 14.0 7 360-366 190-196 (514)
180 PF04977 DivIC: Septum formati 70.0 20 0.00044 28.4 6.6 31 279-309 20-50 (80)
181 PF10226 DUF2216: Uncharacteri 70.0 67 0.0014 31.7 11.1 94 259-352 20-135 (195)
182 PF00170 bZIP_1: bZIP transcri 69.9 24 0.00051 27.8 6.9 27 307-333 29-55 (64)
183 KOG0250 DNA repair protein RAD 69.8 62 0.0014 39.0 12.8 62 273-334 369-431 (1074)
184 PF04949 Transcrip_act: Transc 69.8 83 0.0018 30.1 11.4 89 258-346 40-137 (159)
185 KOG3650 Predicted coiled-coil 69.7 20 0.00043 32.2 7.0 43 288-330 61-103 (120)
186 PF06428 Sec2p: GDP/GTP exchan 69.7 14 0.00029 32.7 5.9 66 281-346 6-72 (100)
187 KOG0977 Nuclear envelope prote 69.7 25 0.00053 39.4 9.2 63 272-334 130-192 (546)
188 PF00038 Filament: Intermediat 69.5 1.3E+02 0.0027 30.1 13.7 41 293-333 212-252 (312)
189 KOG4403 Cell surface glycoprot 69.1 38 0.00082 37.3 10.2 76 260-339 240-323 (575)
190 PF11180 DUF2968: Protein of u 69.0 1.2E+02 0.0025 30.0 12.6 82 257-339 101-182 (192)
191 PF04111 APG6: Autophagy prote 69.0 77 0.0017 32.8 12.1 85 266-354 61-145 (314)
192 PF09304 Cortex-I_coil: Cortex 69.0 90 0.0019 28.2 12.9 58 277-334 10-67 (107)
193 PRK13922 rod shape-determining 69.0 38 0.00081 33.6 9.6 32 309-340 67-98 (276)
194 TIGR03752 conj_TIGR03752 integ 68.9 30 0.00064 38.2 9.5 47 288-334 85-132 (472)
195 PRK12704 phosphodiesterase; Pr 68.5 1.2E+02 0.0025 33.7 14.1 7 360-366 196-202 (520)
196 PRK10698 phage shock protein P 68.4 1.1E+02 0.0024 30.2 12.5 57 283-339 99-155 (222)
197 PF05335 DUF745: Protein of un 67.9 67 0.0015 31.3 10.8 66 279-344 63-128 (188)
198 PF08317 Spc7: Spc7 kinetochor 67.7 1.2E+02 0.0025 31.4 13.1 48 284-331 217-264 (325)
199 PF05837 CENP-H: Centromere pr 67.0 23 0.00049 31.1 6.8 46 291-336 4-49 (106)
200 PF00038 Filament: Intermediat 66.9 1.4E+02 0.0031 29.8 13.6 35 280-314 220-254 (312)
201 PF10506 MCC-bdg_PDZ: PDZ doma 66.9 46 0.00099 27.6 8.1 56 287-342 2-57 (67)
202 KOG2391 Vacuolar sorting prote 66.8 39 0.00085 36.0 9.5 55 283-337 225-279 (365)
203 PF10224 DUF2205: Predicted co 66.7 64 0.0014 27.6 9.1 53 281-333 6-59 (80)
204 PF02388 FemAB: FemAB family; 66.6 32 0.0007 36.4 9.1 59 283-345 242-300 (406)
205 PRK00736 hypothetical protein; 66.3 44 0.00095 27.3 7.9 43 288-330 3-45 (68)
206 PF10211 Ax_dynein_light: Axon 66.3 62 0.0013 31.1 10.2 59 279-337 123-182 (189)
207 PF10482 CtIP_N: Tumour-suppre 66.2 43 0.00093 30.7 8.4 62 273-334 4-65 (120)
208 TIGR00414 serS seryl-tRNA synt 65.9 79 0.0017 33.9 11.9 70 288-363 42-115 (418)
209 PF05529 Bap31: B-cell recepto 65.8 51 0.0011 31.1 9.4 31 300-330 157-187 (192)
210 PF06632 XRCC4: DNA double-str 65.7 60 0.0013 34.3 10.7 21 324-344 193-213 (342)
211 PF08172 CASP_C: CASP C termin 65.7 25 0.00054 35.4 7.6 41 283-330 93-133 (248)
212 KOG2264 Exostosin EXT1L [Signa 65.6 43 0.00093 38.2 9.9 55 283-337 93-147 (907)
213 PF08826 DMPK_coil: DMPK coile 65.5 49 0.0011 26.9 7.9 34 302-335 23-56 (61)
214 PF00769 ERM: Ezrin/radixin/mo 65.5 59 0.0013 32.5 10.2 80 265-344 15-94 (246)
215 PF05103 DivIVA: DivIVA protei 65.4 3.6 7.9E-05 35.8 1.6 45 283-327 25-69 (131)
216 KOG1962 B-cell receptor-associ 65.3 86 0.0019 31.4 11.1 46 288-333 149-194 (216)
217 PRK04863 mukB cell division pr 65.2 1E+02 0.0022 38.5 13.9 89 262-350 321-429 (1486)
218 PRK00106 hypothetical protein; 65.1 1.5E+02 0.0032 33.3 14.1 7 360-366 211-217 (535)
219 COG1196 Smc Chromosome segrega 64.9 83 0.0018 37.8 13.0 59 282-340 438-496 (1163)
220 PF15619 Lebercilin: Ciliary p 64.9 46 0.00099 32.4 9.0 39 300-338 153-191 (194)
221 PF09744 Jnk-SapK_ap_N: JNK_SA 64.8 44 0.00096 31.6 8.7 46 286-331 92-137 (158)
222 PF01166 TSC22: TSC-22/dip/bun 64.7 11 0.00024 30.7 4.0 22 283-304 21-42 (59)
223 PF13805 Pil1: Eisosome compon 64.5 40 0.00087 34.7 8.9 69 264-337 129-199 (271)
224 PF07716 bZIP_2: Basic region 64.5 20 0.00043 27.6 5.3 29 304-332 25-53 (54)
225 KOG4643 Uncharacterized coiled 64.5 94 0.002 37.5 12.7 72 260-331 371-442 (1195)
226 PF14988 DUF4515: Domain of un 64.4 75 0.0016 31.2 10.5 43 292-334 158-200 (206)
227 PF04012 PspA_IM30: PspA/IM30 64.0 96 0.0021 29.7 11.0 44 287-330 102-145 (221)
228 PF00261 Tropomyosin: Tropomyo 63.7 72 0.0016 31.3 10.3 52 288-339 139-190 (237)
229 PF09789 DUF2353: Uncharacteri 63.7 38 0.00082 35.6 8.7 38 288-325 70-107 (319)
230 PF05278 PEARLI-4: Arabidopsis 63.7 1.9E+02 0.0041 30.0 13.7 63 282-344 199-261 (269)
231 PF10146 zf-C4H2: Zinc finger- 63.6 1.7E+02 0.0036 29.4 13.0 52 279-330 28-79 (230)
232 KOG3564 GTPase-activating prot 63.5 62 0.0013 36.2 10.5 84 258-344 27-110 (604)
233 cd07596 BAR_SNX The Bin/Amphip 62.9 1.2E+02 0.0025 27.9 11.1 66 262-330 110-182 (218)
234 PF05384 DegS: Sensor protein 62.8 1.4E+02 0.0031 28.4 12.2 81 267-347 18-127 (159)
235 PF09744 Jnk-SapK_ap_N: JNK_SA 62.6 1.4E+02 0.0031 28.3 12.5 31 267-297 34-64 (158)
236 KOG4196 bZIP transcription fac 62.5 83 0.0018 29.5 9.7 53 283-336 47-99 (135)
237 PLN02320 seryl-tRNA synthetase 62.5 1.9E+02 0.0041 32.3 14.1 75 283-363 93-176 (502)
238 COG2919 Septum formation initi 62.4 1.2E+02 0.0025 27.1 11.5 47 298-344 51-97 (117)
239 smart00787 Spc7 Spc7 kinetocho 62.3 1.8E+02 0.004 30.3 13.3 57 284-340 205-261 (312)
240 PRK13454 F0F1 ATP synthase sub 62.2 1.5E+02 0.0031 28.2 13.7 47 260-306 60-106 (181)
241 PRK12705 hypothetical protein; 62.0 2.1E+02 0.0045 32.0 14.4 6 360-365 184-189 (508)
242 PF07558 Shugoshin_N: Shugoshi 61.9 8.8 0.00019 29.3 2.9 38 291-328 8-45 (46)
243 PF10146 zf-C4H2: Zinc finger- 61.9 1.8E+02 0.0039 29.2 14.0 43 290-332 60-102 (230)
244 smart00787 Spc7 Spc7 kinetocho 61.9 69 0.0015 33.3 10.2 19 316-334 216-234 (312)
245 KOG4797 Transcriptional regula 61.8 16 0.00034 33.3 4.9 29 297-325 67-95 (123)
246 PF03980 Nnf1: Nnf1 ; InterPr 61.6 13 0.00028 32.1 4.3 31 280-310 77-107 (109)
247 PF10168 Nup88: Nuclear pore c 61.4 1.8E+02 0.0038 33.8 14.2 34 282-315 578-611 (717)
248 PHA02562 46 endonuclease subun 61.3 1.6E+02 0.0034 31.7 13.2 8 70-77 115-122 (562)
249 PRK10803 tol-pal system protei 60.9 38 0.00083 34.0 8.0 44 287-330 44-87 (263)
250 PF14712 Snapin_Pallidin: Snap 60.7 97 0.0021 25.7 9.4 35 284-318 15-49 (92)
251 KOG0804 Cytoplasmic Zn-finger 60.4 60 0.0013 35.8 9.7 43 302-344 387-429 (493)
252 PF03961 DUF342: Protein of un 60.2 66 0.0014 34.4 10.1 35 7-45 11-45 (451)
253 TIGR01000 bacteriocin_acc bact 60.2 1.1E+02 0.0024 32.7 11.7 28 139-166 89-119 (457)
254 KOG0996 Structural maintenance 59.8 63 0.0014 39.3 10.5 56 278-333 537-592 (1293)
255 PRK13729 conjugal transfer pil 59.7 39 0.00085 37.3 8.3 55 283-344 69-123 (475)
256 PF15058 Speriolin_N: Sperioli 59.6 17 0.00038 35.8 5.1 33 286-326 8-40 (200)
257 KOG0999 Microtubule-associated 59.4 80 0.0017 35.9 10.6 48 290-337 170-220 (772)
258 TIGR02231 conserved hypothetic 58.6 1.8E+02 0.0039 31.6 13.2 47 300-346 127-173 (525)
259 KOG0933 Structural maintenance 58.3 1.5E+02 0.0033 35.9 13.0 43 295-337 820-862 (1174)
260 PF04340 DUF484: Protein of un 58.1 26 0.00056 33.9 6.1 53 284-340 41-93 (225)
261 KOG0250 DNA repair protein RAD 58.1 1.8E+02 0.0038 35.4 13.6 62 277-338 366-428 (1074)
262 TIGR02209 ftsL_broad cell divi 58.1 35 0.00076 27.8 6.0 31 280-310 28-58 (85)
263 KOG4807 F-actin binding protei 57.9 61 0.0013 35.5 9.1 56 279-334 389-458 (593)
264 COG1792 MreC Cell shape-determ 57.8 32 0.00069 35.1 6.9 34 295-328 71-107 (284)
265 PF04728 LPP: Lipoprotein leuc 57.6 1E+02 0.0022 25.0 8.6 29 284-312 4-32 (56)
266 KOG1318 Helix loop helix trans 57.5 52 0.0011 35.7 8.7 76 259-334 226-320 (411)
267 PF10473 CENP-F_leu_zip: Leuci 57.5 1.7E+02 0.0036 27.4 13.2 23 312-334 74-96 (140)
268 KOG0243 Kinesin-like protein [ 57.4 1.8E+02 0.0039 35.3 13.5 28 280-307 445-472 (1041)
269 PF06216 RTBV_P46: Rice tungro 57.4 55 0.0012 34.0 8.4 46 269-317 67-112 (389)
270 PF08826 DMPK_coil: DMPK coile 57.3 1.1E+02 0.0023 25.0 9.8 44 289-332 17-60 (61)
271 PF12709 Kinetocho_Slk19: Cent 57.1 50 0.0011 28.8 7.0 50 283-332 27-77 (87)
272 KOG0804 Cytoplasmic Zn-finger 56.8 1.3E+02 0.0029 33.3 11.5 50 265-314 367-420 (493)
273 PF07889 DUF1664: Protein of u 56.6 1.6E+02 0.0035 27.1 10.5 53 283-335 68-120 (126)
274 PF09789 DUF2353: Uncharacteri 56.2 1.1E+02 0.0024 32.2 10.6 37 309-345 70-106 (319)
275 KOG0709 CREB/ATF family transc 56.1 29 0.00063 38.2 6.6 23 309-331 277-299 (472)
276 PF10883 DUF2681: Protein of u 56.1 56 0.0012 28.4 7.1 52 291-348 31-82 (87)
277 KOG3335 Predicted coiled-coil 56.0 26 0.00056 34.2 5.5 41 260-306 89-129 (181)
278 PF12777 MT: Microtubule-bindi 55.9 39 0.00084 35.0 7.3 41 270-310 229-269 (344)
279 PF05700 BCAS2: Breast carcino 55.9 55 0.0012 32.0 7.9 31 305-335 176-206 (221)
280 PRK04863 mukB cell division pr 55.5 1.8E+02 0.0039 36.5 13.7 30 303-332 389-418 (1486)
281 PF11544 Spc42p: Spindle pole 55.4 59 0.0013 27.8 6.9 48 285-332 7-54 (76)
282 PF04849 HAP1_N: HAP1 N-termin 55.1 1E+02 0.0022 32.3 10.1 31 297-327 234-264 (306)
283 PF09738 DUF2051: Double stran 54.8 73 0.0016 33.2 9.0 52 290-341 112-163 (302)
284 PF15290 Syntaphilin: Golgi-lo 54.7 1.2E+02 0.0025 31.8 10.2 23 316-338 122-144 (305)
285 PF04999 FtsL: Cell division p 54.5 55 0.0012 27.5 6.8 38 295-332 33-70 (97)
286 KOG3650 Predicted coiled-coil 54.5 52 0.0011 29.7 6.8 40 293-332 59-98 (120)
287 PRK10361 DNA recombination pro 54.3 2.6E+02 0.0056 31.1 13.4 20 290-309 67-86 (475)
288 PF15035 Rootletin: Ciliary ro 54.1 1.1E+02 0.0024 29.5 9.6 21 292-312 90-110 (182)
289 PRK10963 hypothetical protein; 54.0 38 0.00081 33.1 6.5 52 285-340 39-90 (223)
290 TIGR00414 serS seryl-tRNA synt 53.8 90 0.0019 33.5 9.8 64 283-346 30-97 (418)
291 PF14817 HAUS5: HAUS augmin-li 53.5 1.2E+02 0.0027 34.6 11.1 34 283-316 100-133 (632)
292 PF05529 Bap31: B-cell recepto 53.2 1E+02 0.0023 29.0 9.2 29 316-344 152-180 (192)
293 KOG0977 Nuclear envelope prote 53.1 1.6E+02 0.0034 33.3 11.7 40 300-339 151-190 (546)
294 PF05377 FlaC_arch: Flagella a 53.1 52 0.0011 26.5 5.9 30 284-313 8-37 (55)
295 KOG3156 Uncharacterized membra 53.1 71 0.0015 32.1 8.2 52 293-347 97-149 (220)
296 PF10828 DUF2570: Protein of u 53.0 1.6E+02 0.0035 25.9 10.7 51 285-335 34-84 (110)
297 PRK14127 cell division protein 52.9 36 0.00078 30.6 5.6 29 311-339 37-65 (109)
298 PF05622 HOOK: HOOK protein; 52.6 4.6 0.0001 45.5 0.0 63 272-334 314-379 (713)
299 PF10205 KLRAQ: Predicted coil 52.6 1.5E+02 0.0031 26.7 9.2 45 290-334 26-70 (102)
300 PF08537 NBP1: Fungal Nap bind 52.5 1.3E+02 0.0028 31.9 10.3 37 260-296 120-156 (323)
301 KOG1319 bHLHZip transcription 52.3 1.9E+02 0.0042 28.9 10.8 85 260-344 56-152 (229)
302 PF07767 Nop53: Nop53 (60S rib 51.8 76 0.0017 33.3 8.8 37 259-295 273-309 (387)
303 PF05700 BCAS2: Breast carcino 51.8 1.3E+02 0.0027 29.5 9.7 33 302-334 180-212 (221)
304 KOG0946 ER-Golgi vesicle-tethe 51.3 1.1E+02 0.0023 36.3 10.2 47 284-330 651-697 (970)
305 PF13166 AAA_13: AAA domain 51.1 2.5E+02 0.0055 31.3 13.0 62 284-345 404-465 (712)
306 PF04012 PspA_IM30: PspA/IM30 50.9 1.9E+02 0.0041 27.7 10.6 49 289-337 97-145 (221)
307 PF10205 KLRAQ: Predicted coil 50.6 64 0.0014 28.9 6.8 54 284-337 13-66 (102)
308 PF11544 Spc42p: Spindle pole 50.6 1.4E+02 0.003 25.6 8.4 34 312-345 13-46 (76)
309 PF08232 Striatin: Striatin fa 50.5 1.7E+02 0.0036 26.8 9.7 50 286-335 14-63 (134)
310 PF06657 Cep57_MT_bd: Centroso 50.3 1.5E+02 0.0034 24.9 8.8 58 287-344 14-76 (79)
311 TIGR02231 conserved hypothetic 50.2 2.1E+02 0.0045 31.2 12.0 47 292-338 126-172 (525)
312 PF07200 Mod_r: Modifier of ru 50.0 2E+02 0.0042 26.0 12.5 78 265-344 38-115 (150)
313 KOG0995 Centromere-associated 49.9 87 0.0019 35.4 9.1 43 283-325 280-322 (581)
314 PRK02224 chromosome segregatio 49.8 3E+02 0.0065 31.6 13.7 16 282-297 508-523 (880)
315 PF12709 Kinetocho_Slk19: Cent 49.8 1.6E+02 0.0035 25.8 8.8 30 283-312 42-71 (87)
316 PF06548 Kinesin-related: Kine 49.5 1.4E+02 0.003 33.2 10.3 61 282-342 384-479 (488)
317 PF01486 K-box: K-box region; 49.5 83 0.0018 26.9 7.2 26 302-327 73-98 (100)
318 COG3879 Uncharacterized protei 49.4 61 0.0013 33.1 7.2 42 287-331 61-102 (247)
319 PRK11546 zraP zinc resistance 49.0 1.4E+02 0.0031 28.1 9.1 48 285-332 63-110 (143)
320 KOG0946 ER-Golgi vesicle-tethe 49.0 1.2E+02 0.0026 36.0 10.1 57 272-328 660-716 (970)
321 KOG2189 Vacuolar H+-ATPase V0 48.7 1.4E+02 0.003 35.2 10.6 60 280-339 53-127 (829)
322 COG0172 SerS Seryl-tRNA synthe 48.6 1.3E+02 0.0028 33.0 10.0 81 283-363 29-114 (429)
323 PF13935 Ead_Ea22: Ead/Ea22-li 48.6 1.2E+02 0.0027 27.6 8.6 7 283-289 81-87 (139)
324 TIGR00606 rad50 rad50. This fa 48.5 2.5E+02 0.0054 34.4 13.3 9 69-77 664-672 (1311)
325 KOG2129 Uncharacterized conser 48.4 34 0.00073 37.5 5.5 57 286-342 46-102 (552)
326 KOG4571 Activating transcripti 48.3 1.2E+02 0.0025 31.9 9.1 16 64-79 65-80 (294)
327 TIGR02132 phaR_Bmeg polyhydrox 48.0 1.5E+02 0.0032 29.3 9.2 56 284-346 80-135 (189)
328 KOG0999 Microtubule-associated 47.8 84 0.0018 35.8 8.5 74 259-332 114-191 (772)
329 PF14782 BBS2_C: Ciliary BBSom 47.8 1.9E+02 0.0041 31.6 11.1 94 258-354 303-398 (431)
330 TIGR03185 DNA_S_dndD DNA sulfu 47.7 2.3E+02 0.005 31.9 12.1 9 69-77 134-142 (650)
331 PF01486 K-box: K-box region; 47.7 65 0.0014 27.5 6.3 22 285-306 77-98 (100)
332 KOG0971 Microtubule-associated 47.6 93 0.002 37.3 9.1 43 273-315 400-442 (1243)
333 KOG4360 Uncharacterized coiled 47.6 99 0.0021 34.8 9.0 44 283-326 219-262 (596)
334 PF11365 DUF3166: Protein of u 47.6 81 0.0017 27.9 6.8 39 286-331 4-42 (96)
335 PF04899 MbeD_MobD: MbeD/MobD 47.6 1.5E+02 0.0032 24.8 8.0 44 291-334 22-65 (70)
336 PRK10636 putative ABC transpor 47.6 1.6E+02 0.0034 33.1 10.8 54 284-337 564-624 (638)
337 PF13815 Dzip-like_N: Iguana/D 47.5 1.2E+02 0.0026 26.8 8.1 37 295-331 78-114 (118)
338 PF08606 Prp19: Prp19/Pso4-lik 47.4 52 0.0011 27.7 5.3 32 306-337 10-41 (70)
339 KOG4343 bZIP transcription fac 47.3 79 0.0017 35.7 8.2 55 261-315 284-341 (655)
340 PF10168 Nup88: Nuclear pore c 47.2 1.6E+02 0.0035 34.0 11.0 59 285-346 560-618 (717)
341 TIGR01000 bacteriocin_acc bact 46.9 1.5E+02 0.0033 31.7 10.2 28 318-345 291-318 (457)
342 KOG0996 Structural maintenance 46.9 1.3E+02 0.0028 36.9 10.3 83 271-353 523-605 (1293)
343 KOG1103 Predicted coiled-coil 46.5 1.3E+02 0.0029 32.6 9.4 60 261-323 113-172 (561)
344 TIGR00998 8a0101 efflux pump m 46.4 1.5E+02 0.0032 29.6 9.5 21 319-339 140-160 (334)
345 PRK14872 rod shape-determining 46.3 60 0.0013 34.4 6.9 28 311-338 57-84 (337)
346 PF13870 DUF4201: Domain of un 46.2 2.5E+02 0.0054 26.2 10.4 75 270-344 20-117 (177)
347 cd07666 BAR_SNX7 The Bin/Amphi 46.1 1.9E+02 0.0041 29.2 10.1 57 265-331 152-208 (243)
348 PRK13182 racA polar chromosome 45.7 1.5E+02 0.0033 28.4 9.0 23 324-346 124-146 (175)
349 PF05600 DUF773: Protein of un 45.7 88 0.0019 34.6 8.4 49 281-329 444-492 (507)
350 PRK10929 putative mechanosensi 45.6 3.1E+02 0.0068 33.5 13.3 54 293-346 261-314 (1109)
351 PRK05892 nucleoside diphosphat 45.6 58 0.0013 30.6 6.1 54 284-337 12-73 (158)
352 PF15397 DUF4618: Domain of un 45.3 3.5E+02 0.0076 27.8 11.9 48 288-335 177-224 (258)
353 TIGR01843 type_I_hlyD type I s 45.2 3.5E+02 0.0076 27.6 13.7 30 287-316 200-229 (423)
354 PF05667 DUF812: Protein of un 45.2 93 0.002 35.2 8.6 44 285-328 337-380 (594)
355 COG3352 FlaC Putative archaeal 45.2 1.5E+02 0.0032 28.6 8.6 54 283-336 79-133 (157)
356 KOG0161 Myosin class II heavy 45.2 2.4E+02 0.0052 36.4 12.7 57 287-343 1481-1551(1930)
357 PF09325 Vps5: Vps5 C terminal 44.9 2.1E+02 0.0046 27.1 9.9 69 262-333 128-203 (236)
358 COG2900 SlyX Uncharacterized p 44.6 1.5E+02 0.0033 25.2 7.6 24 283-306 8-31 (72)
359 PF14282 FlxA: FlxA-like prote 44.6 1.7E+02 0.0037 25.7 8.5 14 287-300 23-36 (106)
360 KOG0933 Structural maintenance 44.4 3.2E+02 0.0068 33.4 12.7 59 281-339 813-871 (1174)
361 PF05557 MAD: Mitotic checkpoi 44.2 1.9E+02 0.0041 33.0 10.9 64 282-345 509-626 (722)
362 PF08912 Rho_Binding: Rho Bind 43.9 1.1E+02 0.0024 25.7 6.7 33 288-320 1-33 (69)
363 PF11382 DUF3186: Protein of u 43.9 53 0.0011 33.8 6.0 27 284-310 33-59 (308)
364 PF12711 Kinesin-relat_1: Kine 43.8 1.1E+02 0.0023 26.7 6.9 40 292-333 46-85 (86)
365 COG3352 FlaC Putative archaeal 43.4 2.3E+02 0.0051 27.2 9.6 63 283-345 72-135 (157)
366 PF13851 GAS: Growth-arrest sp 43.3 3.2E+02 0.007 26.6 12.2 32 302-333 91-122 (201)
367 PF04375 HemX: HemX; InterPro 43.2 2.2E+02 0.0048 30.0 10.6 44 287-330 90-135 (372)
368 PF03245 Phage_lysis: Bacterio 43.1 2.1E+02 0.0045 25.9 9.0 48 282-329 13-60 (125)
369 KOG4001 Axonemal dynein light 42.9 1.5E+02 0.0033 29.9 8.7 56 272-327 170-229 (259)
370 PF04859 DUF641: Plant protein 42.6 75 0.0016 29.4 6.2 34 291-324 95-128 (131)
371 PF10046 BLOC1_2: Biogenesis o 42.4 2.3E+02 0.0049 24.5 10.1 53 292-344 37-92 (99)
372 PF10174 Cast: RIM-binding pro 42.4 4.4E+02 0.0094 31.1 13.5 58 280-337 354-411 (775)
373 KOG4643 Uncharacterized coiled 42.3 1.2E+02 0.0027 36.6 9.1 32 280-311 527-558 (1195)
374 PF14645 Chibby: Chibby family 42.0 90 0.0019 28.2 6.5 30 290-319 78-107 (116)
375 PRK09174 F0F1 ATP synthase sub 41.8 3.4E+02 0.0074 26.5 13.1 46 260-305 82-127 (204)
376 PF14915 CCDC144C: CCDC144C pr 41.8 2.6E+02 0.0056 29.5 10.5 56 276-331 21-83 (305)
377 KOG0612 Rho-associated, coiled 41.6 3.4E+02 0.0073 33.7 12.6 20 61-80 258-277 (1317)
378 PLN03188 kinesin-12 family pro 41.2 2.2E+02 0.0047 35.4 11.0 69 282-350 1154-1257(1320)
379 PRK14160 heat shock protein Gr 41.2 1.5E+02 0.0032 29.5 8.4 45 284-328 55-99 (211)
380 KOG0161 Myosin class II heavy 41.1 3.8E+02 0.0081 34.9 13.5 17 285-301 945-961 (1930)
381 PF15070 GOLGA2L5: Putative go 40.9 3.9E+02 0.0084 30.6 12.5 40 299-338 89-128 (617)
382 KOG0980 Actin-binding protein 40.9 2.7E+02 0.0058 33.4 11.4 56 30-85 205-263 (980)
383 TIGR02680 conserved hypothetic 40.8 4.3E+02 0.0094 32.8 13.8 13 141-153 161-173 (1353)
384 PF09727 CortBP2: Cortactin-bi 40.6 3.6E+02 0.0077 26.7 10.7 43 292-334 136-178 (192)
385 cd07667 BAR_SNX30 The Bin/Amph 40.3 2.9E+02 0.0063 28.0 10.4 55 274-331 151-205 (240)
386 PTZ00454 26S protease regulato 40.2 1.2E+02 0.0026 32.4 8.1 20 288-307 27-46 (398)
387 PF13870 DUF4201: Domain of un 40.0 3.1E+02 0.0068 25.5 12.9 26 313-338 147-172 (177)
388 PRK11147 ABC transporter ATPas 39.9 1.4E+02 0.003 33.4 8.9 24 285-308 570-593 (635)
389 PF10234 Cluap1: Clusterin-ass 39.8 2E+02 0.0043 29.7 9.3 65 281-348 156-220 (267)
390 KOG1853 LIS1-interacting prote 39.7 3.6E+02 0.0077 28.3 10.9 17 322-338 168-184 (333)
391 KOG0483 Transcription factor H 39.5 46 0.00099 32.7 4.6 35 301-335 109-143 (198)
392 KOG4593 Mitotic checkpoint pro 39.1 5.5E+02 0.012 30.1 13.3 82 266-347 207-304 (716)
393 PRK10698 phage shock protein P 38.8 4E+02 0.0086 26.3 13.8 50 290-339 99-148 (222)
394 KOG4673 Transcription factor T 38.7 3.3E+02 0.0072 32.1 11.4 22 318-339 580-601 (961)
395 KOG4603 TBP-1 interacting prot 38.6 1.6E+02 0.0035 29.0 7.9 11 335-345 173-183 (201)
396 KOG0976 Rho/Rac1-interacting s 38.4 2E+02 0.0044 34.3 9.9 52 282-333 105-156 (1265)
397 PF08941 USP8_interact: USP8 i 38.4 10 0.00023 36.7 0.0 32 322-353 22-53 (179)
398 PRK11281 hypothetical protein; 38.4 5.3E+02 0.012 31.7 13.8 55 292-346 280-334 (1113)
399 PRK11091 aerobic respiration c 38.3 5.3E+02 0.011 29.0 13.1 59 284-342 104-162 (779)
400 PF11500 Cut12: Spindle pole b 38.2 2.5E+02 0.0053 26.8 9.0 53 259-311 81-133 (152)
401 KOG2991 Splicing regulator [RN 38.0 1.8E+02 0.0039 30.4 8.6 65 283-347 236-300 (330)
402 PF06103 DUF948: Bacterial pro 38.0 2.3E+02 0.0051 23.5 10.3 47 284-330 27-73 (90)
403 PF06216 RTBV_P46: Rice tungro 37.9 2.1E+02 0.0045 29.9 9.0 52 283-334 64-115 (389)
404 PF08172 CASP_C: CASP C termin 37.7 1.5E+02 0.0032 30.1 7.9 15 146-160 18-32 (248)
405 PF07200 Mod_r: Modifier of ru 37.6 2.7E+02 0.0058 25.1 8.9 51 266-316 31-81 (150)
406 PF07246 Phlebovirus_NSM: Phle 37.5 3.6E+02 0.0078 27.9 10.6 37 312-348 203-239 (264)
407 TIGR00219 mreC rod shape-deter 37.5 1.8E+02 0.0039 29.6 8.6 15 316-330 71-85 (283)
408 PF03980 Nnf1: Nnf1 ; InterPr 37.5 59 0.0013 28.1 4.5 31 302-332 78-108 (109)
409 PF07851 TMPIT: TMPIT-like pro 37.5 3E+02 0.0066 29.2 10.4 24 285-308 6-29 (330)
410 COG1340 Uncharacterized archae 37.3 5.2E+02 0.011 27.2 12.3 16 265-280 29-44 (294)
411 PRK03992 proteasome-activating 37.2 1.2E+02 0.0027 31.8 7.6 11 322-332 33-43 (389)
412 PLN02678 seryl-tRNA synthetase 37.1 3.8E+02 0.0083 29.4 11.5 24 311-334 78-101 (448)
413 PF15619 Lebercilin: Ciliary p 37.0 4.1E+02 0.0088 25.9 11.4 32 273-304 8-40 (194)
414 PF10046 BLOC1_2: Biogenesis o 37.0 2.8E+02 0.006 24.0 13.5 18 295-312 26-43 (99)
415 PF03233 Cauli_AT: Aphid trans 36.8 1E+02 0.0022 29.8 6.2 51 285-346 113-163 (163)
416 KOG4797 Transcriptional regula 36.8 45 0.00098 30.4 3.7 41 260-304 55-95 (123)
417 KOG4403 Cell surface glycoprot 36.8 3.6E+02 0.0077 30.2 10.9 14 358-371 452-465 (575)
418 PRK10476 multidrug resistance 36.7 2.4E+02 0.0053 28.7 9.4 24 315-338 142-165 (346)
419 TIGR00606 rad50 rad50. This fa 36.6 4.1E+02 0.0089 32.6 12.7 14 275-288 849-862 (1311)
420 PF11853 DUF3373: Protein of u 36.6 28 0.00061 38.5 2.9 24 284-307 32-55 (489)
421 PF12808 Mto2_bdg: Micro-tubul 36.5 69 0.0015 25.4 4.3 25 286-310 25-49 (52)
422 PRK03992 proteasome-activating 36.5 1.1E+02 0.0023 32.3 7.0 7 322-328 40-46 (389)
423 PF04728 LPP: Lipoprotein leuc 36.4 2.3E+02 0.005 22.9 7.9 35 291-332 4-38 (56)
424 PF07111 HCR: Alpha helical co 36.4 5.9E+02 0.013 29.9 13.0 26 276-301 507-532 (739)
425 PF10454 DUF2458: Protein of u 36.3 3.7E+02 0.008 25.3 12.1 35 321-368 86-125 (150)
426 PRK11281 hypothetical protein; 36.2 1.7E+02 0.0037 35.6 9.4 46 261-306 159-215 (1113)
427 KOG3433 Protein involved in me 36.2 3.6E+02 0.0078 26.9 9.9 9 287-295 120-128 (203)
428 KOG3091 Nuclear pore complex, 36.1 1.4E+02 0.003 33.5 7.9 35 317-351 410-444 (508)
429 PF00261 Tropomyosin: Tropomyo 36.1 4.3E+02 0.0093 25.9 14.3 55 285-339 171-225 (237)
430 PF03234 CDC37_N: Cdc37 N term 36.0 2.5E+02 0.0053 27.3 8.8 22 282-303 45-66 (177)
431 KOG4360 Uncharacterized coiled 36.0 2.4E+02 0.0051 32.0 9.6 61 285-345 242-302 (596)
432 PF12999 PRKCSH-like: Glucosid 36.0 2E+02 0.0043 28.0 8.1 36 275-310 138-173 (176)
433 KOG0964 Structural maintenance 35.9 4E+02 0.0086 32.6 11.8 77 269-345 418-501 (1200)
434 PF14362 DUF4407: Domain of un 35.9 4.7E+02 0.01 26.3 12.5 31 282-312 134-164 (301)
435 TIGR01010 BexC_CtrB_KpsE polys 35.8 5.1E+02 0.011 26.7 11.8 31 283-313 170-200 (362)
436 PF07047 OPA3: Optic atrophy 3 35.6 75 0.0016 29.0 5.0 39 259-303 94-132 (134)
437 PHA03161 hypothetical protein; 35.6 3.4E+02 0.0074 26.0 9.4 61 283-346 54-114 (150)
438 PF10498 IFT57: Intra-flagella 35.5 5.8E+02 0.013 27.2 12.2 42 291-332 267-308 (359)
439 KOG0612 Rho-associated, coiled 35.5 3.7E+02 0.0079 33.4 11.6 10 142-151 309-318 (1317)
440 PRK14872 rod shape-determining 35.4 82 0.0018 33.4 5.9 18 293-310 60-77 (337)
441 PF13118 DUF3972: Protein of u 35.2 1.5E+02 0.0033 27.5 6.9 59 260-328 65-123 (126)
442 TIGR02132 phaR_Bmeg polyhydrox 35.2 2.3E+02 0.005 28.0 8.4 22 140-161 32-53 (189)
443 PF05911 DUF869: Plant protein 35.2 1.6E+02 0.0035 34.5 8.6 55 282-336 91-166 (769)
444 PRK10361 DNA recombination pro 35.1 6.5E+02 0.014 28.1 12.8 19 323-341 138-156 (475)
445 cd07611 BAR_Amphiphysin_I_II T 35.1 1.2E+02 0.0027 30.1 6.8 68 277-353 112-183 (211)
446 KOG1850 Myosin-like coiled-coi 35.0 3.1E+02 0.0066 29.5 9.8 62 286-347 253-314 (391)
447 PF11180 DUF2968: Protein of u 35.0 3.7E+02 0.008 26.7 9.8 54 286-339 115-168 (192)
448 PRK01156 chromosome segregatio 34.9 6.8E+02 0.015 29.1 13.6 14 322-335 253-266 (895)
449 PF07407 Seadorna_VP6: Seadorn 34.7 59 0.0013 34.8 4.7 52 291-344 33-88 (420)
450 PRK13923 putative spore coat p 34.6 4.2E+02 0.0091 25.8 10.0 43 305-347 112-154 (170)
451 COG1382 GimC Prefoldin, chaper 34.6 1.4E+02 0.0031 27.4 6.6 26 281-306 68-93 (119)
452 PF14257 DUF4349: Domain of un 34.6 2.6E+02 0.0056 27.6 9.0 22 321-342 172-193 (262)
453 PF06698 DUF1192: Protein of u 34.6 1.3E+02 0.0028 24.5 5.6 24 285-308 23-46 (59)
454 TIGR02680 conserved hypothetic 34.5 6.9E+02 0.015 31.1 14.2 40 273-312 872-911 (1353)
455 COG1842 PspA Phage shock prote 34.4 3.8E+02 0.0082 26.8 10.1 11 443-453 212-222 (225)
456 KOG0995 Centromere-associated 34.4 2.6E+02 0.0057 31.9 9.7 53 282-334 445-501 (581)
457 PF09486 HrpB7: Bacterial type 34.3 4.2E+02 0.009 25.3 9.9 25 284-308 80-104 (158)
458 PF08647 BRE1: BRE1 E3 ubiquit 34.2 3E+02 0.0066 23.6 10.8 62 284-345 18-79 (96)
459 KOG0993 Rab5 GTPase effector R 34.2 3.2E+02 0.0069 30.4 10.0 47 284-330 135-181 (542)
460 PF03962 Mnd1: Mnd1 family; I 34.2 4.4E+02 0.0094 25.4 10.2 54 282-335 68-127 (188)
461 PF10212 TTKRSYEDQ: Predicted 34.2 2.6E+02 0.0056 31.5 9.6 42 290-331 434-475 (518)
462 PRK04778 septation ring format 34.1 4.2E+02 0.0092 29.5 11.4 44 300-343 379-422 (569)
463 PRK13923 putative spore coat p 34.1 1.1E+02 0.0024 29.6 6.1 36 282-317 110-145 (170)
464 cd07596 BAR_SNX The Bin/Amphip 34.0 3.1E+02 0.0067 25.2 8.9 57 274-330 108-171 (218)
465 PRK15396 murein lipoprotein; P 33.9 2.8E+02 0.0061 23.7 7.8 31 284-314 26-56 (78)
466 KOG0978 E3 ubiquitin ligase in 33.8 6.8E+02 0.015 29.3 13.1 64 281-344 550-613 (698)
467 TIGR00998 8a0101 efflux pump m 33.6 3.3E+02 0.0072 27.1 9.7 14 319-332 154-167 (334)
468 COG4372 Uncharacterized protei 33.5 5.7E+02 0.012 28.3 11.7 29 284-312 138-166 (499)
469 KOG4674 Uncharacterized conser 33.5 2.1E+02 0.0045 36.8 9.6 57 275-331 1235-1291(1822)
470 PF15369 KIAA1328: Uncharacter 33.2 6.3E+02 0.014 27.0 13.7 109 258-368 4-118 (328)
471 TIGR01554 major_cap_HK97 phage 33.2 2.9E+02 0.0062 28.7 9.4 26 284-309 35-60 (378)
472 COG4372 Uncharacterized protei 33.1 7.1E+02 0.015 27.6 13.7 40 270-309 131-170 (499)
473 COG3599 DivIVA Cell division i 33.0 3.7E+02 0.0079 26.8 9.6 20 314-333 84-103 (212)
474 KOG2751 Beclin-like protein [S 32.9 4.2E+02 0.0092 29.3 10.8 21 327-347 248-268 (447)
475 KOG0964 Structural maintenance 32.9 4.3E+02 0.0094 32.3 11.5 62 272-333 407-468 (1200)
476 PF04599 Pox_G5: Poxvirus G5 p 32.8 2E+02 0.0044 31.5 8.4 78 253-334 73-155 (425)
477 COG5570 Uncharacterized small 32.8 73 0.0016 25.7 3.8 19 283-301 5-23 (57)
478 KOG2129 Uncharacterized conser 32.7 3.9E+02 0.0084 29.8 10.4 30 13-46 2-31 (552)
479 KOG0994 Extracellular matrix g 32.7 2.5E+02 0.0054 34.9 9.6 93 258-350 1207-1299(1758)
480 PF14282 FlxA: FlxA-like prote 32.5 2.1E+02 0.0046 25.1 7.2 48 297-344 19-70 (106)
481 KOG0018 Structural maintenance 32.4 3.9E+02 0.0085 32.7 11.1 78 260-337 400-477 (1141)
482 PF05103 DivIVA: DivIVA protei 32.3 37 0.0008 29.5 2.4 60 286-345 21-80 (131)
483 PF08232 Striatin: Striatin fa 32.3 2.9E+02 0.0064 25.3 8.3 60 265-324 14-73 (134)
484 PRK09841 cryptic autophosphory 32.1 2.8E+02 0.0061 31.7 9.9 75 270-344 254-330 (726)
485 KOG0982 Centrosomal protein Nu 32.1 3.4E+02 0.0073 30.2 9.9 66 278-345 280-345 (502)
486 TIGR01554 major_cap_HK97 phage 32.1 2.4E+02 0.0053 29.2 8.7 60 285-344 1-60 (378)
487 KOG4807 F-actin binding protei 32.1 3E+02 0.0065 30.4 9.4 63 282-347 427-489 (593)
488 PTZ00464 SNF-7-like protein; P 32.0 5.2E+02 0.011 25.6 10.8 76 273-348 15-98 (211)
489 PHA03011 hypothetical protein; 31.9 3.4E+02 0.0073 24.7 8.3 54 282-335 63-116 (120)
490 PF10779 XhlA: Haemolysin XhlA 31.8 2.8E+02 0.0061 22.5 7.8 56 292-347 1-56 (71)
491 PF10359 Fmp27_WPPW: RNA pol I 31.8 1.8E+02 0.0039 31.7 8.0 62 284-345 164-227 (475)
492 PF13805 Pil1: Eisosome compon 31.7 5E+02 0.011 27.0 10.6 101 262-367 144-244 (271)
493 TIGR02977 phageshock_pspA phag 31.5 4.6E+02 0.0099 25.5 10.0 60 283-342 92-151 (219)
494 TIGR01069 mutS2 MutS2 family p 31.4 8E+02 0.017 28.7 13.4 85 255-345 493-578 (771)
495 PF05600 DUF773: Protein of un 31.2 3.5E+02 0.0077 30.0 10.2 62 282-343 431-492 (507)
496 KOG0976 Rho/Rac1-interacting s 31.2 3.7E+02 0.0079 32.4 10.4 68 278-345 101-168 (1265)
497 COG3937 Uncharacterized conser 31.1 2.1E+02 0.0046 26.0 6.9 62 282-343 45-108 (108)
498 cd07429 Cby_like Chibby, a nuc 31.0 1.1E+02 0.0024 27.6 5.2 37 283-319 72-108 (108)
499 PRK10636 putative ABC transpor 30.9 3.3E+02 0.0071 30.6 10.0 76 270-345 543-625 (638)
500 KOG1318 Helix loop helix trans 30.9 88 0.0019 34.1 5.4 65 276-340 283-360 (411)
No 1
>PF12498 bZIP_C: Basic leucine-zipper C terminal; InterPro: IPR020983 Basic leucine-zipper (bZIP) proteins are found in eukaryotes. They are typically between 174 and 411 amino acids in length. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin []. This entry represents a C-terminal domain found in bZIP proteins. It is found in association with PF00170 from PFAM. There is a conserved KVK sequence motif and a single completely conserved residue K that may be functionally important.
Probab=99.94 E-value=5.1e-27 Score=206.08 Aligned_cols=115 Identities=54% Similarity=0.757 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHhccCccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccCccc
Q 012287 329 TLRAKVKMAEETVKRITGLNPLLQGSPEMSSMSMSSFGGSHSDTSADATVPLQDDPKHHFFQPPSDNPVSSHDLRVNNAL 408 (466)
Q Consensus 329 ~Lr~kl~maE~~v~Rl~~ln~~l~~~~~~~~~~mp~~~gs~s~~s~~~~vp~q~~~~~~f~~~~~n~~~~~~~~~~~n~~ 408 (466)
+||+|||||||+|||++|++++|++++++++++||++ +++++...++++|+||++.|||+++.+|..++.|+ |
T Consensus 1 TLRAKVKMAEe~VkRvTg~n~~~~~~~~~ss~~~p~~-~~~s~~~~~~~~Piq~~~~~~~~~~~~~~~i~~~~----~-- 73 (115)
T PF12498_consen 1 TLRAKVKMAEETVKRVTGMNPMFQAISQMSSMGMPFS-SSPSPADSSAAVPIQDNSNNYFHQPNPNPTISVHG----N-- 73 (115)
T ss_pred ChhHHHHHHHHHHHHHhccCccccccccCCCCCCCCC-CCcccccccccCCccCCchhhccCCCCCCCcCCCC----c--
Confidence 5999999999999999999999999999999999965 55566555599999999999999998887766553 0
Q ss_pred cccccccccCCCcccccccccCcCCCccccchhhhHHHHhhhhcCCCCCCC
Q 012287 409 SDISSVENVQPNAGATAAASGNKIGRTVSLQRVASLEHLQKRIRGGVSPCG 459 (466)
Q Consensus 409 ~~~~~~~~~q~~~~~~~~~~~~~m~~~~s~q~vaslehlqkri~~~~~~~~ 459 (466)
+.++...+.+.+.||+|+++|||||||||||||||||++||+
T Consensus 74 ---------~~~~~~~~~~~~~~~~~t~smqrvaslEhlQkri~~g~~~~~ 115 (115)
T PF12498_consen 74 ---------NDNPEPGGAFVGGKMGRTASMQRVASLEHLQKRIRGGPTSST 115 (115)
T ss_pred ---------ccccccccccccccccCCccCccchhHHHHHHHhcCCCCCCC
Confidence 112222355688999999999999999999999999999985
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.33 E-value=8.8e-12 Score=98.45 Aligned_cols=62 Identities=42% Similarity=0.558 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN 320 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN 320 (466)
.|+|+.||+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..+..+|
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999999999999999999999999999999999999999999988876666665554
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.29 E-value=1.8e-11 Score=96.61 Aligned_cols=62 Identities=40% Similarity=0.558 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN 320 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN 320 (466)
.+.|+.+|+++||+||++||.||++|+++||.+|..|+.+|..|..++..|..++..|..+|
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999999999999999999999999999999988888887776
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.20 E-value=1.2e-10 Score=114.10 Aligned_cols=78 Identities=28% Similarity=0.387 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
|+|-.||+|+||.+|+.+|.|||+++++||.+|.+|..||+.|..+...|+.+...|.++|.+|..+++.|++.|...
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998877443
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.17 E-value=1e-10 Score=124.21 Aligned_cols=71 Identities=34% Similarity=0.436 Sum_probs=68.0
Q ss_pred CCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 255 NMDPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (466)
Q Consensus 255 ~~d~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKa 325 (466)
.+|++--||+.|||+|||||..||+|||+|+..||.+++.|..||+.|+++...|++++..+..||.+||-
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 46888899999999999999999999999999999999999999999999999999999999999999964
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.00 E-value=2.4e-09 Score=82.31 Aligned_cols=51 Identities=43% Similarity=0.636 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
|+++.||+ +||+||++||.||++++.+|+.+|..|+.+|..|..++..|+.
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67888888 9999999999999999999999999999999999998888764
No 7
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.96 E-value=1.2e-09 Score=109.52 Aligned_cols=60 Identities=32% Similarity=0.515 Sum_probs=54.4
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 256 MDPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE 315 (466)
Q Consensus 256 ~d~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~ 315 (466)
.++.-.||+-|++||||+||.||+|||+|++.||.+|..|+.+|..|-++|..|++-|..
T Consensus 285 aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 285 AEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred chhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 355667888899999999999999999999999999999999999999999999876643
No 8
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.86 E-value=3.8e-09 Score=111.13 Aligned_cols=73 Identities=36% Similarity=0.516 Sum_probs=65.4
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 257 DPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 257 d~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
.+...||.||+|+|.+||+.||+|||.|++.||.+|..-..||++|.+++..| +.+|+.|-+++..|++.+.+
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~L-------e~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEEL-------ELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHH-------hhccHHHHHHHHHHHHHHhh
Confidence 46678999999999999999999999999999999999999999988877665 58999999999999877644
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.08 E-value=1.3e-05 Score=79.98 Aligned_cols=50 Identities=32% Similarity=0.565 Sum_probs=42.3
Q ss_pred HHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRR-MLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDI 309 (466)
Q Consensus 260 D~KR~RR-mLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L 309 (466)
|..|..| .++||++|.+||.||..+|..||.+|..|..+|..|...+..|
T Consensus 203 e~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l 253 (279)
T KOG0837|consen 203 EKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKL 253 (279)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 4444444 7999999999999999999999999999999999887766443
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.00 E-value=1e-07 Score=80.55 Aligned_cols=55 Identities=36% Similarity=0.534 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKY 313 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~ 313 (466)
.+.|..||.++||.+|++||.||..++.+||.++..|+.+...|..++..+..++
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~ 81 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999998888777776666655443
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.14 E-value=0.0039 Score=63.41 Aligned_cols=54 Identities=24% Similarity=0.386 Sum_probs=43.3
Q ss_pred HHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRM-LSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKY 313 (466)
Q Consensus 260 D~KR~RRm-LsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~ 313 (466)
+.|+.||+ +.|..+|.|=|+||++..++|+.+...|+.+|..|+.++..+.++.
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI 278 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREI 278 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 4444569999999999999999999999999999999887766443
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.91 E-value=0.0074 Score=55.24 Aligned_cols=63 Identities=25% Similarity=0.379 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
-.|..||-|+||=.|+-||-|+...-.+||.+-..|..|...|. .||..++.++..++.++..
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~--------------~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLK--------------EENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 34777799999999999999999988888887777666655554 5556666666666665533
No 13
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.66 E-value=0.0073 Score=60.51 Aligned_cols=46 Identities=26% Similarity=0.454 Sum_probs=38.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 265 RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
.|.-+|=+++||||.+.+....++..+|..|+.||..|+.++..|+
T Consensus 197 err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~ 242 (269)
T KOG3119|consen 197 ERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLK 242 (269)
T ss_pred HHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444688999999999999999999999999999988887765443
No 14
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.60 E-value=0.022 Score=46.57 Aligned_cols=61 Identities=23% Similarity=0.194 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLN 348 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln 348 (466)
+..|+.||.+|-.....|+.++..|.++...+..|++.|+.+++.-|.++ |+|+.||.++-
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv---EamI~RLk~le 62 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV---EAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhc
Confidence 45677777777776777777777777777777788888888777777665 66788887754
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.32 E-value=0.063 Score=44.49 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~R 343 (466)
.-++.||.+|+.+-.....|..++..|+++...+..+|..|+.+.+.|+..-....+.++.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999998888888888888888888665555444433
No 16
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.01 E-value=0.013 Score=64.61 Aligned_cols=72 Identities=25% Similarity=0.394 Sum_probs=54.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETV 341 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v 341 (466)
|=.||.=|||.+|+++|+||..-|..||..|..|+.|.++|.++-.. +...=.+++.++..|-+ +++
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~-------~d~~L~~~kqqls~L~~------~Vf 556 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDE-------LDSTLGVMKQQLSELYQ------EVF 556 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH------HHH
Confidence 44578889999999999999999999999999999999888654332 23444566777776644 446
Q ss_pred HHHhc
Q 012287 342 KRITG 346 (466)
Q Consensus 342 ~Rl~~ 346 (466)
++|..
T Consensus 557 ~~lrd 561 (604)
T KOG3863|consen 557 QQLRD 561 (604)
T ss_pred HHHhc
Confidence 66654
No 17
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=95.56 E-value=0.13 Score=42.81 Aligned_cols=61 Identities=26% Similarity=0.374 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNE--------AAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~--------l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
+.+.|.+++.|+.||-.|+-++-.|.+.... +..+|-.||.+++.|++.++....++..+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999887763 578999999999999999988887776653
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.77 E-value=0.4 Score=46.78 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 310 SQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 310 ~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
.+....|..+|..|+.+++.++.++..++.
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444443333
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.62 E-value=0.3 Score=40.03 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
..++.|-....+|+.||..|+.++..+..+...+...|..-+.+|++|=.+++..|
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 56888999999999999999999999999999999999999999999988887654
No 20
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.55 E-value=0.18 Score=44.58 Aligned_cols=47 Identities=32% Similarity=0.400 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
.+.+||.++..|-.+...|+.++.. +..||..|+.+.+.||.++...
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~-------l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQE-------LLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555 5555555555555555544433
No 21
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.51 E-value=0.18 Score=44.94 Aligned_cols=47 Identities=26% Similarity=0.384 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
.+..||.++..|-.+-..|+.++..+-++...|..||..||.++..+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666666666655555555555555555555555555555544
No 22
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.37 E-value=0.33 Score=46.03 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
....|+.||..|..++..|++++..|..+|..|..++..+....++.=.+++|...+
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788899999999999999999999999999999999988888887788776543
No 23
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.20 E-value=0.14 Score=38.89 Aligned_cols=42 Identities=24% Similarity=0.444 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 294 QLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 294 ~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
+|+.+...|+.....|..+|..|..||..|++++..|..+++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577778888888888888888899999999999999877664
No 24
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.13 E-value=0.32 Score=43.05 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
+.+..|-.++..|+.....|..+.+.|+ .||..||.++..+..
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~-------~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLR-------IENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 3455566666666666666666555443 788888888887765
No 25
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.12 E-value=1.3 Score=42.12 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
.+.++.+.+...+..-+.-.......|.+++.-+..|+.|...|..++..++.++..+..||..|-.+....
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777777888888888888888888888888888888889999998888887754
No 26
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.35 E-value=0.83 Score=37.58 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
+.+++-|.++++..+.+|..|..+-.....+...+..+|..|+++++.|+.++.-
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888887777778888888888888888888877543
No 27
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=93.34 E-value=0.32 Score=52.83 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
...++||.|++.|+.|.+.|.++...+++++..++.||..|+.+++.+.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4678999999999999999999999999999999999999999996653
No 28
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.81 E-value=0.73 Score=43.76 Aligned_cols=63 Identities=22% Similarity=0.481 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
.+.+.+.++..|+.++..|..++..+..........|..|+.++.+|.-++.++|+-..+|..
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555555555555555544444433
No 29
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=92.77 E-value=0.65 Score=41.52 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
.+|=.+|..|+.....|..++..|++....+..||..|+.+...||.++...
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677899999999999999999999999999999999999999999887643
No 30
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.76 E-value=2.2 Score=47.36 Aligned_cols=83 Identities=18% Similarity=0.309 Sum_probs=61.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETV 341 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v 341 (466)
|....+++-..........-+.++++|+.++...+.++..|..+...+......+..|+..|+.+...++.++...++-+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445777777777777777788888888888888888888888888887777777787777777777777766666544
Q ss_pred HHH
Q 012287 342 KRI 344 (466)
Q Consensus 342 ~Rl 344 (466)
+.+
T Consensus 230 ~~l 232 (546)
T PF07888_consen 230 KTL 232 (546)
T ss_pred HHH
Confidence 433
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.74 E-value=2 Score=41.97 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
++..+|+.++..+..+...|..++..|++++..+..++..|++++..+....
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444445555555566666666666655444
No 32
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.21 E-value=5 Score=38.85 Aligned_cols=86 Identities=23% Similarity=0.409 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA---------------VDNRVL 323 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~---------------~EN~~L 323 (466)
.+....++.+.+-++-+.+=..-+..+..++.++..|+.|+..|..++..+.++...|. ..|-.|
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lL 148 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLL 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888999999999999999999999988877766553 456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012287 324 KADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 324 Kaqve~Lr~kl~maE~~v~Rl 344 (466)
..++..|...+...++-+.-+
T Consensus 149 EkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 149 EKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776666644444
No 33
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.07 E-value=2.5 Score=35.11 Aligned_cols=53 Identities=15% Similarity=0.329 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
.+..+-..+..|+.|+..|+.+...+.+....|..+|..|+.+-.....++..
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777777788888888888888888887776643
No 34
>PRK11637 AmiB activator; Provisional
Probab=92.00 E-value=3.4 Score=43.54 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKAD 326 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaq 326 (466)
..+..|+.++..++.+...+..++..++++...+..+=..++.+
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433333333333333
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.85 E-value=2.8 Score=38.07 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=46.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.+..|=..-||..-....++...++.|+..+..|+.++..+..++..++.+...+..+++.+...+..++..+
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~ 117 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEEL 117 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777777777777777777777777777777766666666665555555555544444444333
No 36
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.75 E-value=6.3 Score=35.78 Aligned_cols=80 Identities=20% Similarity=0.393 Sum_probs=32.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 265 RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
-.+|.-|+.-...|.-=...+..|+.....|+..+..|..++..++++...+..+-+.|+.++..+...++...+-+.++
T Consensus 41 ~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 41 YDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333333333333333333333344444444444444444444444444444444444444444444433333
No 37
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.32 E-value=1.5 Score=36.83 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
-|.-|.-+|..|+.+|.+|..+...+++....|..+|..||.+-.....++
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888888888888888999999988877765443
No 38
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=90.77 E-value=3.8 Score=34.04 Aligned_cols=51 Identities=16% Similarity=0.353 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 295 LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 295 Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
....-......+..|+..+.....+|..|++++..|.++|....+-+.||.
T Consensus 19 y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 19 YEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445566667777777777889999999999999999999999888874
No 39
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=90.47 E-value=1.4 Score=39.68 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
+=.+|..|+...-.|.+++..+.+....+..||..|+-+.+.||.++..
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3345666666667777777778888888888888888888888766533
No 40
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.36 E-value=3.8 Score=35.00 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRV 322 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~ 322 (466)
-++.||.||++.-....-|..++.+|.++...+..++..
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667766665555555555555555554444444443
No 41
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.87 E-value=9.8 Score=35.43 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 272 ESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 272 ESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~R 343 (466)
...+.-++.++..+..++..+..+..+-..|...+.+.++....+..+-..++.....+..+++..+++.+|
T Consensus 119 ~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 119 QELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344455555556666666666666666655555555666666666666666666666666666665554
No 42
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=89.64 E-value=6 Score=40.18 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 258 PVDAKRVRRMLSNRESARRSR---RRKQ-AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 258 ~~D~KR~RRmLsNRESARRSR---~RKq-~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
..+.||.|-.++- +-||-.+ +-|. ..+.||+.+-..|+.||..|+.+...|--+.+++..+=..|++++.+|.++
T Consensus 69 K~~RrKLKNRVAA-QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 69 KVQRRKLKNRVAA-QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 4577888854443 2233222 2233 347799999999999999999999999999999999999999999999888
Q ss_pred HHHHHHH
Q 012287 334 VKMAEET 340 (466)
Q Consensus 334 l~maE~~ 340 (466)
.++---+
T Consensus 148 ~~~~~~v 154 (292)
T KOG4005|consen 148 QQHNTRV 154 (292)
T ss_pred HHHhhHH
Confidence 7765443
No 43
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.36 E-value=2.8 Score=38.76 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRL--TDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql--~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
..+.+|+.++..|+.|...|...+ .+|......+..++..|..+++.|+
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443 2333344444444444444444443
No 44
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=88.46 E-value=2.4 Score=36.03 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
-++|..++..|+..-..|..++...+.++..|..||..|..=|..|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888898888999999999999999999999998888887
No 45
>PRK11637 AmiB activator; Provisional
Probab=88.43 E-value=11 Score=39.72 Aligned_cols=65 Identities=14% Similarity=0.222 Sum_probs=31.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 267 MLSNRESARRSRRRKQAHLTELETQVSQLRVENSS-------LLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 267 mLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~-------L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
+...+......+..++..+.+++.+...|+.+... |..++...+.+...+..+-..|...|..|.
T Consensus 182 L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 182 LAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555554444 333333333344444444444555554443
No 46
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.29 E-value=3.2 Score=35.46 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
-|.=|.-+|..|+.+|..|..++..+......|..+|..||.+-.....++
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888888888888877777777788888888888887775443
No 47
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=88.29 E-value=8.3 Score=39.92 Aligned_cols=86 Identities=15% Similarity=0.274 Sum_probs=57.8
Q ss_pred CCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 255 NMDPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 255 ~~d~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.+.+.++|=.|=|++|-+== --|..=.-+++-|..++..|+.....|.+++.+....+..+......|+.++..|+.+|
T Consensus 85 ~l~evEekyrkAMv~naQLD-Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNAQLD-NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999984311 01112223455566666666666667776666666666667777788888888888888
Q ss_pred HHHHHHH
Q 012287 335 KMAEETV 341 (466)
Q Consensus 335 ~maE~~v 341 (466)
...++++
T Consensus 164 ~~rdeli 170 (302)
T PF09738_consen 164 KQRDELI 170 (302)
T ss_pred HHHHHHH
Confidence 7777766
No 48
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.51 E-value=3.6 Score=44.93 Aligned_cols=61 Identities=23% Similarity=0.396 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEA-AVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l-~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
.+..|+.+-+.|+.||+.|+++...+.++.+.. ..+..+|..+.+.|..+++....++..|
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888887776654 4677888888888877766554444333
No 49
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.48 E-value=10 Score=37.32 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD 319 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~E 319 (466)
-++.+..|+.+++.|+..|..|...+...+++...+..+
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555444444444444333
No 50
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=87.45 E-value=0.96 Score=43.10 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
|+|+|.+..+--.+|.-|..+| ++-..|..+++.||.++..|++.+...|.
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek 52 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEK 52 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH-------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999888 44667889999999999999888855443
No 51
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=87.31 E-value=3.1 Score=33.84 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
++|.+||.++..++.-...|...+..-+++...|..+-+.|+.++..+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888888888888888887777766655555555555554444443
No 52
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.24 E-value=14 Score=35.84 Aligned_cols=71 Identities=13% Similarity=0.199 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQL-------RVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~L-------e~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
+.+-.+..|....+-+-.+.+++.+...||.++..- +.+...|..++..|+++...+..++.....++..|
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~l 164 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRL 164 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777778888888888888888888887755 44444444444444444333333333333333333
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=87.22 E-value=17 Score=36.67 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=33.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (466)
Q Consensus 261 ~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~ 312 (466)
.+-.+++..-.+.+++.-.-++..+++|+.+|.+++.+...++.++..++.+
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666667777777777777777777766666655443
No 54
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=87.15 E-value=2.4 Score=38.22 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET--LRAK 333 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~--Lr~k 333 (466)
..+.+||.++..|-.|...|++.+..+-++...|.-||..||.++.. +...
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~ 60 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKT 60 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccch
Confidence 45789999999999999999999999999999999999999999988 6443
No 55
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.10 E-value=4.8 Score=40.65 Aligned_cols=46 Identities=24% Similarity=0.427 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve 328 (466)
...+++..+.+.++.|+..|..++..++.+|..+..+=..|+.+..
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666665555544443333333333
No 56
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.96 E-value=20 Score=34.86 Aligned_cols=8 Identities=13% Similarity=0.459 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 012287 326 DVETLRAK 333 (466)
Q Consensus 326 qve~Lr~k 333 (466)
.+...+.+
T Consensus 127 ~~~~~~~~ 134 (302)
T PF10186_consen 127 ELEERKQR 134 (302)
T ss_pred HHHHHHHH
Confidence 33333333
No 57
>PRK09039 hypothetical protein; Validated
Probab=86.85 E-value=9.1 Score=39.86 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
..+...+|..|+.+...|+.++..++.....++.+.+..+.+++.|++++..+-
T Consensus 132 ~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 132 SARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677888888888888888888888888888999999999988876663
No 58
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.49 E-value=6.1 Score=40.34 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcc
Q 012287 278 RRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE-TVKRITGL 347 (466)
Q Consensus 278 R~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~-~v~Rl~~l 347 (466)
...+...+.+++..+..++.+...|..++..++.+...+..++..+++++..|..++...+. +++|=..+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888888999999999999999999888888888888888888888888765544 33333333
No 59
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.47 E-value=25 Score=32.81 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=29.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 264 VRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (466)
Q Consensus 264 ~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l 316 (466)
......|++.+-+=-.-+++.+..|+.++..+..+...|...|..+......+
T Consensus 33 Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 33 LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666666666665555555555554444333333
No 60
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=86.46 E-value=6.8 Score=36.31 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCC
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQGS 354 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~~~ 354 (466)
.++.....+...+..+..+..+|..+......-...-..|+.+++...+.+...|..++||+.+|.-|+..
T Consensus 27 ~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~W 97 (135)
T TIGR03495 27 DLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRW 97 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 34444555666777777777788888777777777778999999999999999999999999999988865
No 61
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.41 E-value=11 Score=33.87 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=36.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 263 RVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (466)
Q Consensus 263 R~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~ 317 (466)
+.+-+..-.|...-|+..=.+.-++|+..+..|+.++.++..++.+|+.++..+.
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666677777666666666777777777777777777777666665543
No 62
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.36 E-value=14 Score=40.07 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=58.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
|+++-+.++=+.-.++....+.....|+.+++.|+.+...+..++.........+..++..+..++..|+.+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5556666665666666677778888999999999999999999998888888888888888888888887665
No 63
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=86.29 E-value=17 Score=31.19 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
-.+|..+.+.+=|++=..|.-+.....+|+.+++.|....+.|..+|.....++..++.-|.++..++...
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888777888999999999999999999999999999999999998888887755
No 64
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.94 E-value=4.5 Score=42.09 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
++|..++..|+.+|..|+.++.....++..|..+|+.||.....+.+++..-|+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE 76 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEE 76 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666666666666666666666666666555555544443
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.90 E-value=13 Score=41.98 Aligned_cols=57 Identities=23% Similarity=0.409 Sum_probs=40.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 267 MLSNRESARRSRRRKQAHLTELETQVSQLRV------------------------ENSSLLKRLTDISQKYNEAAVDNRV 322 (466)
Q Consensus 267 mLsNRESARRSR~RKq~~LeELE~qV~~Le~------------------------ENs~L~~ql~~L~q~~~~l~~EN~~ 322 (466)
.+.|.+.--+--..+..+|.+||.++..++. .|..|+.+|.+++..|..+.++|.+
T Consensus 106 qv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~e 185 (617)
T PF15070_consen 106 QVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENME 185 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3445554444444677788888877766554 4677899999999999999998844
Q ss_pred H
Q 012287 323 L 323 (466)
Q Consensus 323 L 323 (466)
|
T Consensus 186 l 186 (617)
T PF15070_consen 186 L 186 (617)
T ss_pred h
Confidence 4
No 66
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=85.81 E-value=2 Score=33.95 Aligned_cols=49 Identities=31% Similarity=0.440 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
||+..|.|||.++..-+ |...+ .-....+.+..+..||+.|+++++.++
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~--d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSL--DRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccC--CchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888766544 22221 124455667778899999999998765
No 67
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.65 E-value=11 Score=32.00 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
.-++.||.+|++.-.-..-|.-++.+|.++.+.|..|-..++...++|++.
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 346778888877555555555555555555555555555555555555443
No 68
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=85.25 E-value=0.044 Score=57.59 Aligned_cols=53 Identities=28% Similarity=0.322 Sum_probs=45.8
Q ss_pred ChhHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 012287 257 DPVDAKRVRRMLSNRESARR---SRRRKQAHLTELETQVSQLR-VENSSLLKRLTDI 309 (466)
Q Consensus 257 d~~D~KR~RRmLsNRESARR---SR~RKq~~LeELE~qV~~Le-~ENs~L~~ql~~L 309 (466)
...+.|+..|+..|+.+|.+ +|.||+.+...|..+|+.|+ .++..|..++..|
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~L 205 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPL 205 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccc
Confidence 46689999999999999999 99999999999999999999 7777755555444
No 69
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.21 E-value=9.4 Score=33.48 Aligned_cols=62 Identities=11% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDI--SQKYNEAAVDNRVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L--~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~R 343 (466)
+..++.|+.++......-+.|..++..+ .+.++.+..+=.+++-++.+|+++++-.+..++.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444455444444444444444444444 4444444444444555555555544444333333
No 70
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=85.18 E-value=4.4 Score=42.84 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 277 SRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 277 SR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
-=.|-+.+...||.-+..++.||..|..+|.++.+++.+.+.|+..|..++.+..
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 3456677888889999999999999999999999999999999988876665543
No 71
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=85.16 E-value=4.4 Score=41.78 Aligned_cols=65 Identities=25% Similarity=0.434 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLN 348 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln 348 (466)
.+.+.+.++...+.+...|..++..|+.+|.....+...|..+++....++..|+.++..|.+..
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence 44556666666666777777778888888888889999999999999999999998887776553
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.06 E-value=16 Score=41.79 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLK 324 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LK 324 (466)
+..+..+|+.|...|+.++...++++..++.|..+|+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666655555555555554443
No 73
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.98 E-value=22 Score=34.99 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q 311 (466)
++..|+.|...|...+..++.
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~ 77 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLER 77 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 74
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.32 E-value=4.2 Score=36.85 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 012287 322 VLKADVETLRAK 333 (466)
Q Consensus 322 ~LKaqve~Lr~k 333 (466)
.|+.++..|+.+
T Consensus 72 ~L~~el~~l~~r 83 (120)
T PF12325_consen 72 ELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.01 E-value=8.8 Score=35.41 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA---VDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~---~EN~~LKaqve~Lr~kl~maE~ 339 (466)
+|-..|..|..++..|+.+...+..++..+........ ..|..|..+|..|+..+..++.
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~ 94 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEK 94 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 34455555555555555555555555555554443332 2344555555555555555544
No 76
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=83.78 E-value=4 Score=41.35 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNE----AAVDNRVLKA 325 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~----l~~EN~~LKa 325 (466)
.+.+|+.||..|++++..++++... +..||..||+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888887776444332 4455555554
No 77
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=83.53 E-value=14 Score=30.55 Aligned_cols=62 Identities=27% Similarity=0.352 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 012287 287 ELETQVSQLRVENSSLLKRLT----DISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLN 348 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~----~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln 348 (466)
++..++..|-.||..|+..|. .+.++|..+..=-..-+.+.+-+..+++.|.++|.+|+-.|
T Consensus 3 e~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~EN 68 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEEN 68 (68)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 455678888888888776654 45667777777666777788888899999999999987543
No 78
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.14 E-value=10 Score=38.92 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEET 340 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~ 340 (466)
..|..|..++..+..+...++.++..++.+...+..+-..+.++...+..++..++..
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666666666666666666544
No 79
>PRK02119 hypothetical protein; Provisional
Probab=83.08 E-value=7.4 Score=32.28 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
++|.+||.++..++.-...|...+..-++
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~ 37 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQF 37 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777766666666555554443
No 80
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.03 E-value=9.8 Score=42.95 Aligned_cols=65 Identities=15% Similarity=0.299 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVL---KADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~L---Kaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
+.+..+|+.++.+|+.++..|..++..+..+...-.-.++++ ..++..|+.+|......++.|..
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888887777666554455444 45777787777777766666643
No 81
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.99 E-value=10 Score=39.48 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=12.8
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHhh
Q 012287 141 NLEDYQAVLKSKLNLACAAVALSR 164 (466)
Q Consensus 141 dp~~Y~a~LK~kLd~~cAAvA~~r 164 (466)
+..+-+..|-..|..++..|+--|
T Consensus 94 ~L~~~~~~le~~L~~~~e~v~qLr 117 (306)
T PF04849_consen 94 DLSERNEALEEQLGAALEQVEQLR 117 (306)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666555433
No 82
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.95 E-value=8.3 Score=37.81 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
|++|+..-..|..||..|...+..+.+-...|..++..|+.++..+.+-+..+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a 62 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA 62 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443333333
No 83
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=82.88 E-value=8.7 Score=30.80 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
+++||.++..+......+ ..||..|+..++.|.+-++..=++-+-+
T Consensus 2 i~elEn~~~~~~~~i~tv--------------k~en~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 2 IDELENELPRIESSINTV--------------KKENEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666554333 3566667777777765554444443333
No 84
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.79 E-value=6 Score=36.61 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
+.+|..++..|+.++..|..++..|.... -|.+|+..+..|+.++...++-+..|
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~-----t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEP-----TNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554321 23344444444444444444333333
No 85
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.62 E-value=4.8 Score=33.14 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 297 ~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
.++..|+.++..+.+++.....+|+.|+.+=.....++.++
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a 45 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDA 45 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444433333333333
No 86
>PHA03162 hypothetical protein; Provisional
Probab=82.49 E-value=3.6 Score=38.15 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 012287 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDI---------------SQKYNEAAVDN-------RVLKADVETLRAKVKM 336 (466)
Q Consensus 279 ~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L---------------~q~~~~l~~EN-------~~LKaqve~Lr~kl~m 336 (466)
-+|+.-++||..++..|+.||..|++++..- +++..-...-| ..|+++|..+-.++.-
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe~KVr~~t~~~vT 88 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIEAKIRHETLKATT 88 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3566789999999999999999999999321 11111111122 3455555555555555
Q ss_pred HHHHHHHHhccCcccc
Q 012287 337 AEETVKRITGLNPLLQ 352 (466)
Q Consensus 337 aE~~v~Rl~~ln~~l~ 352 (466)
.+++.+-|.++.-.++
T Consensus 89 k~e~e~aL~~lt~Rid 104 (135)
T PHA03162 89 KEEFEAAIANIRFRVD 104 (135)
T ss_pred HHHHHHHHhcCeeeEE
Confidence 5666666766654443
No 87
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=81.97 E-value=0.6 Score=49.27 Aligned_cols=44 Identities=36% Similarity=0.543 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLL 303 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~ 303 (466)
++|++|=+.+||.+|-|+|.|||..+..|+.+...+..+|..|.
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 44455558999999999999999999999999999999998876
No 88
>PF15294 Leu_zip: Leucine zipper
Probab=81.94 E-value=4.8 Score=41.34 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
|..++..|+.||..|+.++..++.++..+..|+..|..++..|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888888888888888888888888877777765
No 89
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.70 E-value=16 Score=37.01 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
+..++++..+...|..++..|..++..++.++..+..||..|......|.-++.
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~ 194 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVY 194 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 345677777777788888888888888888888888888777766655544443
No 90
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.51 E-value=11 Score=36.89 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
..|..|+.-|..|..+...|+.....++..|..|..++..|+.+
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q 51 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQ 51 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 91
>PRK09039 hypothetical protein; Validated
Probab=81.34 E-value=12 Score=39.00 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
..+.-|..++..|+.+...|...|..++++......+=..|+.+++.+
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444334444444433
No 92
>PRK04406 hypothetical protein; Provisional
Probab=81.29 E-value=12 Score=31.19 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
+|.+||.++..++.-...|...+..-+ .+-..|+.++..|
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq-------~~I~~L~~ql~~L 51 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQ-------LLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 456666666665555555554444333 3334445555544
No 93
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.18 E-value=14 Score=33.47 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 012287 300 SSLLKRLTDISQKYNE-------AAVDNRVLKADVETLRAK 333 (466)
Q Consensus 300 s~L~~ql~~L~q~~~~-------l~~EN~~LKaqve~Lr~k 333 (466)
..|..++.+++.+|.. ...++.+|+.+|..|..-
T Consensus 71 ~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 71 EELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3344555555555544 356788888888887543
No 94
>PLN02678 seryl-tRNA synthetase
Probab=81.12 E-value=34 Score=37.24 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYN----------EAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQ 352 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~----------~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~ 352 (466)
..+-+|..+...|+.+...|+.+...+..+.. .+..+=+.|+.++..|+.++...++-+..+ +.
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~------~~ 106 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAK------LK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 34444444444444444444444444444433 333444556666666666665555433332 33
Q ss_pred CCCCCCCCCCCCCCC
Q 012287 353 GSPEMSSMSMSSFGG 367 (466)
Q Consensus 353 ~~~~~~~~~mp~~~g 367 (466)
.++++....+| +++
T Consensus 107 ~iPNi~~~~VP-~G~ 120 (448)
T PLN02678 107 TIGNLVHDSVP-VSN 120 (448)
T ss_pred hCCCCCCccCC-CCC
Confidence 45555666666 344
No 95
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=80.83 E-value=15 Score=35.35 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVK 342 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~ 342 (466)
...|+|=..+...|..-|.-|+.++.........|..++..|+.+...|+.++...|....
T Consensus 66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~ 126 (182)
T PF15035_consen 66 LIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWR 126 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777778888888999999999999988889999999999999998888888776543
No 96
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=80.76 E-value=22 Score=29.47 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVK 342 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~ 342 (466)
.+=..++.+|..|-..|..+.-.+......|...|..+..++..|..++...+.-+.
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555555555555555555555555554444444333
No 97
>PHA02562 46 endonuclease subunit; Provisional
Probab=80.72 E-value=30 Score=37.08 Aligned_cols=42 Identities=10% Similarity=0.208 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKAD 326 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaq 326 (466)
...|+.++..|+.++..+..++..+..++..+..+-..+..+
T Consensus 360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444455555555555544444444333
No 98
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=80.54 E-value=26 Score=29.04 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVK 342 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~ 342 (466)
-|-..|..|-.+-..|....-.+...+..|+.+...+..+...|+.+++.+..++...++..+
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366788888888888888888888888888888888888888888888888887766665443
No 99
>PRK02119 hypothetical protein; Provisional
Probab=80.42 E-value=13 Score=30.79 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
.+..||.++..|+....-+...+..|+.....-..+-..|+.++..|..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999998888777777777766555555555555655555533
No 100
>PRK00295 hypothetical protein; Provisional
Probab=80.25 E-value=13 Score=30.41 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
++|.+||.++..++.-...|...+..-++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~ 33 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQR 33 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888999998888887777776655443
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.97 E-value=29 Score=37.81 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRLTD 308 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql~~ 308 (466)
=++++.++|..+..|+.||..|..+...
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999998876644
No 102
>PRK02793 phi X174 lysis protein; Provisional
Probab=79.65 E-value=12 Score=30.98 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
++|.+||.++..++.-...|...+..-+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq 35 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHE 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777766666555444
No 103
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=79.61 E-value=15 Score=41.30 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
++.+++|+.+++.|..+...+...+..+...+..+..+..+.+.+.+.|+++++..+.+++-|
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL 389 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELL 389 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666666666666666666666666666666666665555444
No 104
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.16 E-value=17 Score=34.87 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l 316 (466)
+..+.+|..++..|+.||..|..++..+++.|..|
T Consensus 110 ~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 110 KNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554444443
No 105
>PRK04325 hypothetical protein; Provisional
Probab=79.14 E-value=12 Score=31.01 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
+|.+||.++..++.-...|...+..-+
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq 36 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQ 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888888877777766665544
No 106
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=79.11 E-value=36 Score=39.33 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=4.5
Q ss_pred HHHHHHHHh
Q 012287 69 AFQRFLQEA 77 (466)
Q Consensus 69 aFqrFLeE~ 77 (466)
.+..+|...
T Consensus 121 ~~~~~l~~~ 129 (1164)
T TIGR02169 121 EIHDFLAAA 129 (1164)
T ss_pred HHHHHHHHc
Confidence 345555543
No 107
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=78.90 E-value=13 Score=36.72 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 012287 294 QLRVENSSLLKRLTDISQKYN---EAAVDNRVLKA 325 (466)
Q Consensus 294 ~Le~ENs~L~~ql~~L~q~~~---~l~~EN~~LKa 325 (466)
+|+.||..|++++..|+.+.. .+..||..||.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333222 33444444444
No 108
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=78.64 E-value=49 Score=33.94 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 258 PVDAKRVRRMLSNRESARRSRRRKQAHLT-ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 258 ~~D~KR~RRmLsNRESARRSR~RKq~~Le-ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
++|.|-.-|.|-.+.=--++..|-|.-.- +|....++-..-..+|..++.+|+++.++..-.-.=||+++..|-+|++.
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~e 90 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRE 90 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHH
Confidence 44555555667777777777777666555 66666666555566677778888887777777777888888888888877
Q ss_pred HHHHHHHH
Q 012287 337 AEETVKRI 344 (466)
Q Consensus 337 aE~~v~Rl 344 (466)
...++.++
T Consensus 91 Rn~Li~~l 98 (277)
T PF15030_consen 91 RNRLITHL 98 (277)
T ss_pred HHHHHHHH
Confidence 77776666
No 109
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=78.61 E-value=18 Score=37.28 Aligned_cols=63 Identities=16% Similarity=0.324 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
..++.+..++..|+.||..+..+..........+..|+..+..++..+..++...+.+...|.
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667778888999999999999888888889999999999999999999988888877664
No 110
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.54 E-value=7 Score=38.86 Aligned_cols=38 Identities=13% Similarity=0.286 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve 328 (466)
+.+.++.++..|.++...++.+|..+..||..|+.+++
T Consensus 173 ~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 173 KLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33334444444444555555555555555555555443
No 111
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=78.54 E-value=15 Score=36.88 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
+-+.+|..+++.|+.|...|+-+++.++.+...+....+.|-.++..+
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999988888888888888888764
No 112
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=78.42 E-value=8.6 Score=33.80 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEET 340 (466)
Q Consensus 302 L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~ 340 (466)
|.+++..++++...+..+|..|+.+++.|+..-...|++
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 333444444444444556666666666665432333333
No 113
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.42 E-value=60 Score=33.55 Aligned_cols=69 Identities=22% Similarity=0.360 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQ-------KYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLN 348 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q-------~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln 348 (466)
+..+.+.+||.+...|..|...|..+...+.+ .+..+..+-..+..+...|..++..+...+++|...|
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344555555554444444444444444433 2333333333444555555566666666666665544
No 114
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.16 E-value=9.6 Score=29.09 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 301 ~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
+|......|...|..|..+|..|+.+.+.|++++...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677888889999999999999999888776543
No 115
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.08 E-value=23 Score=32.75 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
...+.|+.++..|+.++..+-.+|..|+.+...+..+=..|..++..+..++
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554444444444444444443333
No 116
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=78.07 E-value=36 Score=34.35 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
.+...+..|+.++..++..-..|..++..+......+..+=..|+.++..++..+..++
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777777766666666666666666665554443
No 117
>PRK00736 hypothetical protein; Provisional
Probab=77.83 E-value=15 Score=30.01 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
.+|.+||.++..++.-...|...+..-++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~ 33 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWK 33 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999988887777766655443
No 118
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=77.81 E-value=29 Score=37.15 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccC
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYN----------EAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQG 353 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~----------~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~~ 353 (466)
.+-+|..+..+|+.+...|+.+...+.++.. .+..+-+.|+.++..|+.+++..++-+..+ +..
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~ 102 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL------LLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHh
Confidence 3444445555555555555555555444443 344455666666666666665555543333 333
Q ss_pred CCCCCCCCCC
Q 012287 354 SPEMSSMSMS 363 (466)
Q Consensus 354 ~~~~~~~~mp 363 (466)
++++..-.+|
T Consensus 103 iPN~~~~~vP 112 (425)
T PRK05431 103 IPNLPHDSVP 112 (425)
T ss_pred CCCCCCccCC
Confidence 4455555566
No 119
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.49 E-value=34 Score=39.25 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~ 310 (466)
.++.+|+.||..|..++..|.
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~L~ 480 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQNLV 480 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444443
No 120
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=77.41 E-value=51 Score=37.01 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
++.|+.+.+.+...+..|..+...|..++..+...-..|..++..|.++.
T Consensus 187 ~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 187 MEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333333333333333333344444444444444
No 121
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=77.39 E-value=40 Score=32.40 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVL 323 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~L 323 (466)
..+|+.++..|+.++..|..++..+..++..+...+.++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777788888777777777777776665555443
No 122
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=77.21 E-value=13 Score=34.71 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRV 297 (466)
Q Consensus 284 ~LeELE~qV~~Le~ 297 (466)
.|.+...++..|+.
T Consensus 35 ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 35 QLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333344444443
No 123
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=77.05 E-value=38 Score=36.17 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=51.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q 012287 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDIS--------------QKYNEAAVDNRVLKAD 326 (466)
Q Consensus 261 ~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~--------------q~~~~l~~EN~~LKaq 326 (466)
.-|.|.+.-|-|--|.-| +-+++-..+.++|+..|+.|..+|...+ .-...+..||..|..+
T Consensus 74 q~kirk~~e~~eglr~i~----es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq 149 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIR----ESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ 149 (401)
T ss_pred HHHHHHHHhccHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 346667777777777666 3455556667778888888887775543 3344567899999999
Q ss_pred HHHHHHHHHHH
Q 012287 327 VETLRAKVKMA 337 (466)
Q Consensus 327 ve~Lr~kl~ma 337 (466)
+.++.+++...
T Consensus 150 L~~l~~e~~Ek 160 (401)
T PF06785_consen 150 LDALQQECGEK 160 (401)
T ss_pred HHHHHHHHhHh
Confidence 99998877433
No 124
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.02 E-value=46 Score=28.43 Aligned_cols=78 Identities=21% Similarity=0.368 Sum_probs=42.6
Q ss_pred HHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 012287 267 MLSNRESARRSRRRKQ------AHLTELETQVSQLRVENSSLLKRLTDISQKY----------NEAAVDNRVLKADVETL 330 (466)
Q Consensus 267 mLsNRESARRSR~RKq------~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~----------~~l~~EN~~LKaqve~L 330 (466)
+..|.+.-+.+-.++. ..+-+|..+...|..+-..|+.+-..+..+. ..+..+=..|+.++..|
T Consensus 7 ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 7 IRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKEL 86 (108)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHH
Confidence 3446666666555552 3344444555555555555555555444443 34555666666677777
Q ss_pred HHHHHHHHHHHHHH
Q 012287 331 RAKVKMAEETVKRI 344 (466)
Q Consensus 331 r~kl~maE~~v~Rl 344 (466)
+.++...++-+..+
T Consensus 87 e~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 87 EEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666554444
No 125
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=76.90 E-value=45 Score=34.73 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQK--------------YNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~--------------~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
+-..++..|+.||..|......+.+. +..++.+....|.+++.|.+.++....-++|...
T Consensus 57 ~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 57 EEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666777887777766665443 3345566677777777777777777666666543
No 126
>PRK04406 hypothetical protein; Provisional
Probab=76.86 E-value=15 Score=30.68 Aligned_cols=52 Identities=10% Similarity=0.222 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
++.|+.++..|+....-+...+..|+ ..=.....+|..|+++++.. .+|+..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN-------~~v~~Qq~~I~~L~~ql~~L---~~rl~~ 57 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELN-------DALSQQQLLITKMQDQMKYV---VGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---HHHHHh
Confidence 44677777777776555544444332 22233345567777666554 556654
No 127
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=76.78 E-value=15 Score=37.08 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
+|.+-.++....++..-..=+.+..+++++...|+.||..||.+|+.|++++....
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444466666777777888888888888877664443
No 128
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.75 E-value=37 Score=32.70 Aligned_cols=68 Identities=22% Similarity=0.404 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 012287 278 RRRKQAHLTELETQVSQLRV------ENSSLLKRLTDISQKYNEAAVDNRVLK----ADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 278 R~RKq~~LeELE~qV~~Le~------ENs~L~~ql~~L~q~~~~l~~EN~~LK----aqve~Lr~kl~maE~~v~Rl~ 345 (466)
-.+....+.+|+.++..++. +...|..++..|+.+...+..+-..+. ..++.|+..+..+-+.+.|.|
T Consensus 78 ~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 78 IEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555554432 223334444444433333333222221 234444444444444444443
No 129
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=76.54 E-value=66 Score=31.23 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~R 343 (466)
++|.++..|+.....|+.+...+..+......+...|+..+..|.+.+.-++--...
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777788888888888888777766654433
No 130
>PHA03155 hypothetical protein; Provisional
Probab=76.15 E-value=16 Score=33.34 Aligned_cols=26 Identities=38% Similarity=0.652 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTD 308 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~ 308 (466)
.-++||+.++..|+.||..|++++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35799999999999999999999854
No 131
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.10 E-value=65 Score=31.36 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (466)
Q Consensus 279 ~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKa 325 (466)
...+..+.+++.++..|+.+...+..++...+++...+...+...+.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555554444444433
No 132
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=76.08 E-value=30 Score=37.65 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=40.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 269 SNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 269 sNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
+++...++--.++...+.+-..+.+.|+.+...|..++..+..+......++.+++++|..++..+...+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 34444555555555555555555555666666666666666666666666666666666666655554443
No 133
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.02 E-value=31 Score=30.26 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSL--LKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L--~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
.+.+.+.++..++.+...| ...+..|+-....+..+=+.|.+++..+.+++.+.
T Consensus 43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444 44445555455555566666677777776666544
No 134
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=75.87 E-value=25 Score=30.88 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
.|.+++.+--.+...|..|..++..+.++...-.. +..++.+++.++++++.....+.-+.+.
T Consensus 18 ~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~v 80 (106)
T PF05837_consen 18 KLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKNV 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666665554444333 6778889999999888887766666554
No 135
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=75.79 E-value=37 Score=34.55 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYN 314 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~ 314 (466)
+++.++..++.+...+..++..++.++.
T Consensus 207 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 234 (423)
T TIGR01843 207 EAQGELGRLEAELEVLKRQIDELQLERQ 234 (423)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 136
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=75.52 E-value=3.1 Score=31.71 Aligned_cols=39 Identities=36% Similarity=0.414 Sum_probs=5.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLK 304 (466)
Q Consensus 265 RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ 304 (466)
++...||+=|+..-... ..+.+||.++..|..||-.|+.
T Consensus 4 k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~ 42 (46)
T PF07558_consen 4 KYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRE 42 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444444333332 3344444444444444444433
No 137
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=75.43 E-value=11 Score=40.03 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQL 295 (466)
Q Consensus 283 ~~LeELE~qV~~L 295 (466)
+..++|..+|..|
T Consensus 46 kEN~~Lk~eVerL 58 (420)
T PF07407_consen 46 KENNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555555
No 138
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=75.40 E-value=50 Score=34.02 Aligned_cols=52 Identities=21% Similarity=0.421 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
+..++.++.++.+.+.+...++.++++...++..+..+-..|...+.-+..|
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666666666666655555555555555555444
No 139
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.31 E-value=26 Score=40.02 Aligned_cols=83 Identities=16% Similarity=0.256 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccCccccCCCCCCCCC
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE---ETVKRITGLNPLLQGSPEMSSMS 361 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE---~~v~Rl~~ln~~l~~~~~~~~~~ 361 (466)
+..|..++..|+.+...|..++..+.+.+.....++..+..++..++..+.... ...++|...-.-|.....+.=.-
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRv 322 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRV 322 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEe
Confidence 778888888888888888888888888888888888888888888887777666 56666655544454444444445
Q ss_pred CCCCCC
Q 012287 362 MSSFGG 367 (466)
Q Consensus 362 mp~~~g 367 (466)
.|.+.+
T Consensus 323 RP~~~~ 328 (670)
T KOG0239|consen 323 RPLLPS 328 (670)
T ss_pred cCCCcc
Confidence 555443
No 140
>PRK02793 phi X174 lysis protein; Provisional
Probab=75.28 E-value=21 Score=29.47 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
.++|.++..|+....-+...+..|.+-...-..+-..|+.++..|
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888877777777777665555555555555555554
No 141
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.90 E-value=55 Score=35.98 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
-.++.|+.++++|+.||..|+..++.|...+..+..+-..+-.+++.|+-++.
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 44566778899999999999999999988888888888777777777766653
No 142
>PRK04325 hypothetical protein; Provisional
Probab=74.77 E-value=21 Score=29.66 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
+...++.++..|+....-+...+..|.+....-..+-..|+.++..|
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668888888888777777777666654444444444444444444
No 143
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.71 E-value=17 Score=34.25 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQ-KYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q-~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
++|.....++...+.|+.++..+.+ ++..+..++..|+.+++.|++++
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555544432 44555555556666666555544
No 144
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.30 E-value=9.8 Score=41.27 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
..+.+-.|...|+.|...+.++++..+-.+..|..||..|+.+.-..+...++.
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~ 81 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTL 81 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888888888888888889999999999888776665554443
No 145
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=74.16 E-value=57 Score=28.09 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=53.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (466)
Q Consensus 265 RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~ 329 (466)
.+|-..++.....=..|+..+..||.++..|..|...-..+.-.+.+....+..||+.|+..+..
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46667777888888899999999999999999998888888888888888888888888776653
No 146
>PRK00846 hypothetical protein; Provisional
Probab=74.03 E-value=26 Score=29.80 Aligned_cols=41 Identities=27% Similarity=0.244 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
++|.+||.++...+.-...|...+...+ .+-..|+.++..|
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq-------~~I~~L~~ql~~L 53 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADAR-------LTGARNAELIRHL 53 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4566666666666655555544444332 3334455555544
No 147
>smart00340 HALZ homeobox associated leucin zipper.
Probab=73.95 E-value=6.5 Score=30.17 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 307 TDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 307 ~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
..|.+-+..|..||+.|+.++++||+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788889999999999999964
No 148
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=73.74 E-value=14 Score=32.57 Aligned_cols=32 Identities=16% Similarity=0.356 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 279 ~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
.+.++++.+++.+++.|+.+|..|..++..|+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666666666666666666554
No 149
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.63 E-value=61 Score=32.39 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEET 340 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~ 340 (466)
|+.+......+...|..++..+......+..+...-..+...|+.++..+...
T Consensus 66 L~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 66 LEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555666666666666666666666666677777666666553
No 150
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=73.02 E-value=16 Score=36.11 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 297 ~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
.||..|..++..+..++..|..||..|+.-++.+ +-.-++++||++.
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~----~~la~~ie~l~~~ 171 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAEHV----QYLAEVIERLTGQ 171 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH----HHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence 4788888888888888888889998888754443 3334678888664
No 151
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=73.01 E-value=49 Score=32.17 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
...+..|+.++..++.....|..++..|++++..+...-..|.+++...+++..+.
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~ 153 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVR 153 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777888888888877777777777777776666554443
No 152
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.99 E-value=36 Score=39.27 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 292 VSQLRVENSSLLKRLTDISQ---KYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q---~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
...|+.||-.|.+++..|++ +|.++..|++.|..+++-|+.++..+.
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777765 566777777777777777777765543
No 153
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=72.77 E-value=11 Score=39.42 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 321 RVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 321 ~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
.+|..+-.+|++.|..+...+.|+
T Consensus 69 ~elneEkrtLeRELARaKV~aNRV 92 (351)
T PF07058_consen 69 QELNEEKRTLERELARAKVSANRV 92 (351)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Confidence 345555555556665555556665
No 154
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=72.72 E-value=4.7 Score=32.76 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 298 ENSSLLKRLTDISQKYNEAAVDNRVLKAD 326 (466)
Q Consensus 298 ENs~L~~ql~~L~q~~~~l~~EN~~LKaq 326 (466)
|...|+.++.+|..+...|+.||..||..
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666666666666777777654
No 155
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.48 E-value=50 Score=35.41 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDN----------RVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN----------~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
++-.|-.+-.+|..++..|+.+...+..+= ..|++++..|..+++..++..+.+
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666655555444211 134444444544444444444444
No 156
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=72.32 E-value=24 Score=28.70 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
.||.++..|+....-+...+..|++....-..+-..|+.++..|..+
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888887777777767666655555555555555555555433
No 157
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=72.06 E-value=6.3 Score=35.93 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQ---------------KYNEAAVDN-------RVLKADVETLRAKVKMAE 338 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql~~L~q---------------~~~~l~~EN-------~~LKaqve~Lr~kl~maE 338 (466)
|..-++||..++..|+.||..|++++..-.. +..-...-| ..|+.+|..+-.++--.+
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe~kVr~~t~~~vTk~ 80 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKIEAKVRKLTAKLVTKE 80 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Confidence 4567899999999999999999999865431 111111122 344455555555555556
Q ss_pred HHHHHHhccCcccc
Q 012287 339 ETVKRITGLNPLLQ 352 (466)
Q Consensus 339 ~~v~Rl~~ln~~l~ 352 (466)
++.+-|.++.-.++
T Consensus 81 e~~e~l~~l~~Ri~ 94 (118)
T PF05812_consen 81 EIEEALKNLTIRID 94 (118)
T ss_dssp HHHHHHHT-EEEEE
T ss_pred HHHHHHhcceeeEE
Confidence 67777777664444
No 158
>PLN02939 transferase, transferring glycosyl groups
Probab=72.00 E-value=1e+02 Score=37.02 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 309 ISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 309 L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
|..++..+..||..||.+++.|.+++-...++-+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERV 259 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 567788899999999999999999886665555554
No 159
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=71.94 E-value=52 Score=29.57 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 316 AAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 316 l~~EN~~LKaqve~Lr~kl~ma 337 (466)
+..+...++.++..|..+.++.
T Consensus 103 le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 103 LEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 160
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=71.92 E-value=19 Score=29.28 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 297 ~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
.+...+..++..++++...+..||..|+.++..|..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455566666666666667777777777777754
No 161
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.87 E-value=20 Score=28.41 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 304 KRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 304 ~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
.++..++.+...+..+|..|+.+++.|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444555555555555
No 162
>PRK00295 hypothetical protein; Provisional
Probab=71.74 E-value=34 Score=27.98 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
||.++..|+....-+...+..|++....-..+-..|+.++..|.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~ 46 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888877777766666666555544444455555555543
No 163
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=71.71 E-value=57 Score=36.63 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
.++++.++..|+.|......+..++.....+...+..+=..|+.+.+.++.|.++.....++.+
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~ 107 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFT 107 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4678888888888888888899888888888888888889999999998888888888777764
No 164
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=71.64 E-value=22 Score=30.86 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 294 QLRVENSSLLKRLTDISQ------KYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 294 ~Le~ENs~L~~ql~~L~q------~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
-+..+|..|..++..|+. +......||..|+.++..|+.-.
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666554 34567889999999999887554
No 165
>smart00338 BRLZ basic region leucin zipper.
Probab=71.32 E-value=17 Score=28.71 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 305 RLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 305 ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
.+..|+.+...|..+|..|+.++..|+.++...
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666667777777777776665444
No 166
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=71.22 E-value=4.7 Score=41.24 Aligned_cols=57 Identities=28% Similarity=0.347 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
.++.++|.+|+.|+.-|..|.++|+.-..-|..+...-..+|+++.+++.+++..|+
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE 273 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEE 273 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccH
Confidence 467899999999999999999999887777887777777899999999888765554
No 167
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.20 E-value=34 Score=35.08 Aligned_cols=61 Identities=10% Similarity=0.323 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE-TVKRITG 346 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~-~v~Rl~~ 346 (466)
.+++.+|+.|..+...+..++..++.+...+..+=..|+.+|..|+..+...++ +-+|++.
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555666666555544444 3445543
No 168
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=71.18 E-value=71 Score=28.74 Aligned_cols=10 Identities=20% Similarity=0.404 Sum_probs=3.6
Q ss_pred HHHHhccCcc
Q 012287 341 VKRITGLNPL 350 (466)
Q Consensus 341 v~Rl~~ln~~ 350 (466)
++-|..-|.+
T Consensus 114 ~~dL~~QN~l 123 (132)
T PF07926_consen 114 IEDLNEQNKL 123 (132)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 169
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.15 E-value=31 Score=40.45 Aligned_cols=8 Identities=50% Similarity=0.829 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 012287 323 LKADVETL 330 (466)
Q Consensus 323 LKaqve~L 330 (466)
|..++++|
T Consensus 442 l~~eletL 449 (1118)
T KOG1029|consen 442 LQQELETL 449 (1118)
T ss_pred HHHHHHHH
Confidence 33333333
No 170
>PRK00846 hypothetical protein; Provisional
Probab=71.08 E-value=28 Score=29.61 Aligned_cols=52 Identities=12% Similarity=0.101 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
.+|+.++..|+....-....+..| ...=......+..|+++++ -+++||...
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~L-------N~~v~~qq~~I~~L~~ql~---~L~~rL~~~ 60 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTEL-------SEALADARLTGARNAELIR---HLLEDLGKV 60 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 345566666655443333222222 2222334455555655543 345666654
No 171
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=70.83 E-value=51 Score=38.17 Aligned_cols=48 Identities=27% Similarity=0.319 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
.+.||.+...|+.|...++.+-..+-+.|..|+.||-.|..+|..|+.
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555566666666666666666655544
No 172
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=70.83 E-value=21 Score=38.29 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 271 RESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 271 RESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
-++|.--|+|-.+.-...|..+.++..|...|+.++.........+..||..||.-+..|++-.++.
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 4677777888888888888888999999999999999888888888889999998888888776665
No 173
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=70.74 E-value=14 Score=41.79 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
+|-.||.+|..|+.-|+-++...++-...|+..+++|..++..+++++..
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999998888887788888888887777777666533
No 174
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=70.64 E-value=26 Score=40.71 Aligned_cols=64 Identities=20% Similarity=0.408 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVK 342 (466)
Q Consensus 279 ~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~ 342 (466)
.||...+..|..+...+..+...++..|..++..+.....++..|..+++.||.++..++..+.
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4666778888888888888888888888888888888888888888888888888766665543
No 175
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.60 E-value=33 Score=38.96 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDI---SQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L---~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
.++++|+.++..|+.+...+..++..- ..++..+..++..|+.++++=..++.+.+.-..++
T Consensus 443 ~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 443 RELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554321 22444455566666655554444444444433333
No 176
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=70.55 E-value=54 Score=30.16 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCccccCC
Q 012287 295 LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG-LNPLLQGS 354 (466)
Q Consensus 295 Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~-ln~~l~~~ 354 (466)
|+..-......+..|+.++...+.....-...+..|+..++..+..+++... ..++|+..
T Consensus 32 LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 32 LERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 3333333444444455555555555555555566666666555555555443 37777653
No 177
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=70.35 E-value=40 Score=40.38 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=27.4
Q ss_pred HHHHhHHHHHHHHHH----HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 266 RMLSNRESARRSRRR----KQA------HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVL 323 (466)
Q Consensus 266 RmLsNRESARRSR~R----Kq~------~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~L 323 (466)
-+|+++..|.|.+.- +.. ...+...++++|+.|...+..++..++..|......|..|
T Consensus 414 erLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l 481 (1041)
T KOG0243|consen 414 ERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELL 481 (1041)
T ss_pred HHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 346667777765421 111 1333444455555555555555555555554333333333
No 178
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=70.20 E-value=52 Score=34.44 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
|.=|.|-++- |+++|=....+.++.++|.-...-+........+-..+++++..+..||.-|++++.....+....|.
T Consensus 172 daLrEKtL~l--E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek 249 (305)
T PF14915_consen 172 DALREKTLAL--ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEK 249 (305)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555443 78888888888888888877666666666666666777888888889999999999988888776665
Q ss_pred HHH
Q 012287 340 TVK 342 (466)
Q Consensus 340 ~v~ 342 (466)
+|-
T Consensus 250 ~Vi 252 (305)
T PF14915_consen 250 TVI 252 (305)
T ss_pred HHh
Confidence 443
No 179
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=70.07 E-value=1e+02 Score=34.12 Aligned_cols=7 Identities=0% Similarity=0.410 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 012287 360 MSMSSFG 366 (466)
Q Consensus 360 ~~mp~~~ 366 (466)
..|+-+.
T Consensus 190 ~aiqr~a 196 (514)
T TIGR03319 190 TAIQRYA 196 (514)
T ss_pred HHHHhcc
Confidence 4555443
No 180
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.99 E-value=20 Score=28.40 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDI 309 (466)
Q Consensus 279 ~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L 309 (466)
.+.++.+.+|+.+++.|+.+|..|..++..+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777777777777777777777665
No 181
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=69.97 E-value=67 Score=31.74 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAH----LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD--------------- 319 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~----LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~E--------------- 319 (466)
.-.+|.||..+.+.++=.-+-+=.+. +...-.++..|+..|+.|.....+|..-+..|.-+
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFG 99 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFG 99 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhh
Confidence 34678888888877775444332222 22222345556666666666666655544444321
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 012287 320 ---NRVLKADVETLRAKVKMAEETVKRITGLNPLLQ 352 (466)
Q Consensus 320 ---N~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~ 352 (466)
-.+++.++....+|++..|.-.+.|.-.|..|.
T Consensus 100 ryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLK 135 (195)
T PF10226_consen 100 RYTASVMRQEVAQYQQKLKELEDKQEELIRENLELK 135 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 357888999999999999888777777776665
No 182
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=69.85 E-value=24 Score=27.82 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 307 TDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 307 ~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
..|+.++..|..+|..|+.++..|...
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 183
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=69.83 E-value=62 Score=38.96 Aligned_cols=62 Identities=15% Similarity=0.289 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 273 SARRSRRRKQAHLTELETQV-SQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 273 SARRSR~RKq~~LeELE~qV-~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
..+.+..+..+.|.+++.+. ..+..+-.++..++..|+++...+..++..|+.+.+.+..++
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555444 444444444444455555555555555555555555554444
No 184
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=69.83 E-value=83 Score=30.14 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 012287 258 PVDAKRVRRMLSNRESARRSRR-----RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA----VDNRVLKADVE 328 (466)
Q Consensus 258 ~~D~KR~RRmLsNRESARRSR~-----RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~----~EN~~LKaqve 328 (466)
+.+.-|.|+-+.-+.-|+++|. |=....++||.-+.-.+.|...+++++....+++.-|- -.-++++.-++
T Consensus 40 EeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykeale 119 (159)
T PF04949_consen 40 EEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALE 119 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3345566677788888888874 22333456666666667777777777776666555432 23356666666
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 012287 329 TLRAKVKMAEETVKRITG 346 (466)
Q Consensus 329 ~Lr~kl~maE~~v~Rl~~ 346 (466)
++..+.+....+|.+|..
T Consensus 120 a~nEknkeK~~Lv~~L~e 137 (159)
T PF04949_consen 120 AFNEKNKEKAQLVTRLME 137 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 776666666666666644
No 185
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=69.72 E-value=20 Score=32.22 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
|-.||-+|+.....|.+++..+.++...|..||.+|-+=|+.|
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 4456777777777777777777777777788888888777765
No 186
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=69.70 E-value=14 Score=32.68 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRL-TDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql-~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
+.+...+++..+..++.|...|...| ............+...+..+...|+.+++.++.+++.+..
T Consensus 6 e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~ 72 (100)
T PF06428_consen 6 ERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQA 72 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777666 4444444455555566666667776666666665555543
No 187
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.67 E-value=25 Score=39.40 Aligned_cols=63 Identities=21% Similarity=0.415 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 272 ESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 272 ESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
+.|.+.|..=...+.+++..+..|+.|...++.++..+..+...|..||..|+.++..++.++
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344444444455667777788888888888888888888888888888888888888887654
No 188
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=69.48 E-value=1.3e+02 Score=30.12 Aligned_cols=41 Identities=12% Similarity=0.252 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 293 SQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 293 ~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
..++.|+..++.++..++.++..+...|..|..++..|+.+
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 33444444444444444444444444454444444444433
No 189
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=69.13 E-value=38 Score=37.30 Aligned_cols=76 Identities=25% Similarity=0.452 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEA--------AVDNRVLKADVETLR 331 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l--------~~EN~~LKaqve~Lr 331 (466)
..+..++|.+.-|.-+|- .+.+.||+.++..-+.|+....-+--.|+++..++ -.||..+|.+++.||
T Consensus 240 akehv~km~kdle~Lq~a----Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR 315 (575)
T KOG4403|consen 240 AKEHVNKMMKDLEGLQRA----EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLR 315 (575)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHH
Confidence 344455566555554433 35566666666666666544433333333333311 256777777777777
Q ss_pred HHHHHHHH
Q 012287 332 AKVKMAEE 339 (466)
Q Consensus 332 ~kl~maE~ 339 (466)
.+|..||.
T Consensus 316 ~~L~kAEk 323 (575)
T KOG4403|consen 316 VALEKAEK 323 (575)
T ss_pred HHHHHHHH
Confidence 77766653
No 190
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.01 E-value=1.2e+02 Score=30.05 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 257 DPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 257 d~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
...|.||. ++.+-.+-..|.-..-++++..|...+..-+..-.....+-...+++...|..|...+++++..|.+++..
T Consensus 101 A~~eirR~-~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~ 179 (192)
T PF11180_consen 101 ADVEIRRA-QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQ 179 (192)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455444 45565666666667777788888888877777777777777788888888888888888888888888766
Q ss_pred HHH
Q 012287 337 AEE 339 (466)
Q Consensus 337 aE~ 339 (466)
.+.
T Consensus 180 Lq~ 182 (192)
T PF11180_consen 180 LQR 182 (192)
T ss_pred HHH
Confidence 654
No 191
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.00 E-value=77 Score=32.81 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=56.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 266 RMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 266 RmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
+++..=+...+-+..=.+.+.+|+.+...|+.+-..+......++.+...+..+...|+.++..+..++.. ++++.
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~----L~ktN 136 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDR----LRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----HHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcC
Confidence 33444444444445555667777778888877777777788888888888888888888888888777743 46777
Q ss_pred ccCccccCC
Q 012287 346 GLNPLLQGS 354 (466)
Q Consensus 346 ~ln~~l~~~ 354 (466)
-.|..|.+.
T Consensus 137 v~n~~F~I~ 145 (314)
T PF04111_consen 137 VYNDTFHIW 145 (314)
T ss_dssp TTTTT--EE
T ss_pred chhceeeEe
Confidence 788777754
No 192
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=68.99 E-value=90 Score=28.24 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 277 SRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 277 SR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
||.-.+..+..|+..+..++.....|.++-..|......|..+|..+-.++..|++++
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki 67 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKI 67 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555555555555555555444
No 193
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=68.98 E-value=38 Score=33.60 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 309 ISQKYNEAAVDNRVLKADVETLRAKVKMAEET 340 (466)
Q Consensus 309 L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~ 340 (466)
.-..+..+..||+.|++++..|+.++...+++
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l 98 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQELEQL 98 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777777777777777766654443
No 194
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.94 E-value=30 Score=38.17 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDIS-QKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~-q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
|..+-+.|+.....+..++...- .....+..|-..|+.++..|+.++
T Consensus 85 l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 85 LKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443322 223344444555555555444443
No 195
>PRK12704 phosphodiesterase; Provisional
Probab=68.48 E-value=1.2e+02 Score=33.74 Aligned_cols=7 Identities=0% Similarity=0.111 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 012287 360 MSMSSFG 366 (466)
Q Consensus 360 ~~mp~~~ 366 (466)
..|+-+.
T Consensus 196 ~a~qr~a 202 (520)
T PRK12704 196 QAIQRCA 202 (520)
T ss_pred HHHHhhc
Confidence 4555443
No 196
>PRK10698 phage shock protein PspA; Provisional
Probab=68.42 E-value=1.1e+02 Score=30.16 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
..+..|+.++...+.....|..++..|+.++..+...-..|.++...-+.+.++.+.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~ 155 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQ 155 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777777777777777777777777777766666555543
No 197
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=67.87 E-value=67 Score=31.30 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 279 ~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
.-|+.-++.||.+|.+.+.-.......|...+........--...+.++..|...|+.+...+...
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a 128 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANA 128 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999888888888877777766666666666777777766666665544443
No 198
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=67.72 E-value=1.2e+02 Score=31.35 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
.|.++..++..++.+...|..++..+..+...+..+-..|++++..++
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 199
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=67.00 E-value=23 Score=31.10 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
.+..+..++..+..+|..++.+...+...|++|-.++.+|..+.+.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~ 49 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKS 49 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555666666666666666666666666676666666666555433
No 200
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=66.94 E-value=1.4e+02 Score=29.76 Aligned_cols=35 Identities=23% Similarity=0.508 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~ 314 (466)
+-+..+..|+.++..|+..|..|..++.+++..+.
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 44455666666666666667777776666655444
No 201
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=66.92 E-value=46 Score=27.61 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVK 342 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~ 342 (466)
.|..+++.|+..|..|...+....++...+......-.+..-+|+-+++=.+.+++
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e 57 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKE 57 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46778888999999999999998888888888888888888888776665555444
No 202
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.78 E-value=39 Score=36.01 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
+.++.|....+.|+.--++|..-.+.|......|+.+=..|+..++-|..|++++
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ea 279 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREA 279 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4445555555555555555555555555555555555566666666666665553
No 203
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=66.73 E-value=64 Score=27.60 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=38.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 281 KQAHLTELETQ-VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 281 Kq~~LeELE~q-V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
....++.++.+ -..|..+...|...|..|..+......||..|+.+-+.|...
T Consensus 6 ~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 6 NSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555543 667777778888888888888888888888888888777544
No 204
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=66.63 E-value=32 Score=36.37 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
+|++.|+.++..|+.+...|..++.... ....+-..|..+++.+..++..++++++.-.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~ 300 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAEYG 300 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555566666666666666655554433 3344556688888888888888888765543
No 205
>PRK00736 hypothetical protein; Provisional
Probab=66.32 E-value=44 Score=27.34 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
++.++..|+....-+...+..|+.....-..+-..|+.++..|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777776666666666554444444444444444444
No 206
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=66.30 E-value=62 Score=31.12 Aligned_cols=59 Identities=12% Similarity=0.265 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 012287 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE-AAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 279 ~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~-l~~EN~~LKaqve~Lr~kl~ma 337 (466)
..-...+.+|+.+...|+.+...|..++..+.++... ...+++..+.++..|.+..+..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677778888888888888777777777776654 3455666666776665554433
No 207
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=66.23 E-value=43 Score=30.72 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 273 SARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 273 SARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
+..|-|.=-...+.+|+.+|..|..|--.=..++.++-.+.+.+..+|+.|+.-|..|+.++
T Consensus 4 ~l~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RL 65 (120)
T PF10482_consen 4 LLNKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRL 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556777888888888887766667777777777777777777777777776555
No 208
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=65.92 E-value=79 Score=33.87 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCCCCCCCC
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQK----YNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQGSPEMSSMSMS 363 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~----~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~~~~~~~~~~mp 363 (466)
|..+++.|+.|-..+.+++..+... ...+..+-+.|+.++..|.++++..++-+..+ +..++++..-.+|
T Consensus 42 ~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~lPN~~~~~vP 115 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK------LLSIPNIPHESVP 115 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhCCCCCCccCC
Confidence 3344444555544555544442211 33444555666666666666665555433332 3334455555666
No 209
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.82 E-value=51 Score=31.07 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 300 SSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 300 s~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
..+..+++.+.++....+.|-..||.|.+.|
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444
No 210
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=65.71 E-value=60 Score=34.31 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012287 324 KADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 324 Kaqve~Lr~kl~maE~~v~Rl 344 (466)
|++|..|+.+|..++...+.+
T Consensus 193 K~KIR~lq~~L~~~~~~~~~~ 213 (342)
T PF06632_consen 193 KAKIRELQRLLASAKEEEKSP 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccch
Confidence 566677776676666554444
No 211
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=65.70 E-value=25 Score=35.43 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
++..|||.++..++.+...|+.++. .|..+|-.|=.++.-|
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~-------~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVE-------SLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4566777777666666655555444 4446776665555433
No 212
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=65.58 E-value=43 Score=38.17 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
..+.|||.|-++|+.|.+++..+++++++.......|=..||..++.-+.+++.+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 6789999999999999999999999999988888888888998888776665444
No 213
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=65.50 E-value=49 Score=26.91 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 302 L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
.+...-.+..++......|+.|..+|..|+.++.
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555566777777777777765553
No 214
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=65.48 E-value=59 Score=32.48 Aligned_cols=80 Identities=18% Similarity=0.278 Sum_probs=45.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 265 RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
+-+..-=..|+.-=.+....+..|+.+...++.+-..|..+...+.+....|..+......+-..|.+++..++..|.+|
T Consensus 15 ~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l 94 (246)
T PF00769_consen 15 RQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARL 94 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334455555566777888888888888888888888777777777666555444444445555555555555544
No 215
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=65.43 E-value=3.6 Score=35.82 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqv 327 (466)
.||+.|...+..|..+|..|..++..|+.+...+...+..|+..+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 588888888999998888888888877766655555554444433
No 216
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=65.31 E-value=86 Score=31.38 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
|+.+...+..+-..|..++.....++..+..++..|+.+.+.+...
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 5666666666666677777777777777777777777777766443
No 217
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.18 E-value=1e+02 Score=38.52 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=39.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 012287 262 KRVRRMLSNRESARRSRRRKQA-------------HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA--- 325 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~-------------~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKa--- 325 (466)
++.+.+.+.++.|++-+.-+.. .+++|+.++...+.+...+..++..+..++..+..+-..|+.
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665544332 223333333333333344433444444333333333344433
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhccCcc
Q 012287 326 ----DVETLRAKVKMAEETVKRITGLNPL 350 (466)
Q Consensus 326 ----qve~Lr~kl~maE~~v~Rl~~ln~~ 350 (466)
.+..++.++...+..+.++.....+
T Consensus 401 elqqel~elQ~el~q~qq~i~~Le~~~~~ 429 (1486)
T PRK04863 401 DYQQALDVQQTRAIQYQQAVQALERAKQL 429 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555444433
No 218
>PRK00106 hypothetical protein; Provisional
Probab=65.13 E-value=1.5e+02 Score=33.31 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 012287 360 MSMSSFG 366 (466)
Q Consensus 360 ~~mp~~~ 366 (466)
..|+-+.
T Consensus 211 ~aiqr~a 217 (535)
T PRK00106 211 QAMQRLA 217 (535)
T ss_pred HHHHHhc
Confidence 4555443
No 219
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=64.94 E-value=83 Score=37.82 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEET 340 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~ 340 (466)
+.+++++..++..|+.....+..++..+.+.+..+..+-..++.++..++.++...+..
T Consensus 438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 496 (1163)
T COG1196 438 QTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496 (1163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666666666666666666666666666666666555553
No 220
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=64.87 E-value=46 Score=32.35 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 300 SSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 300 s~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
.....++.....+...+..++..|..++..|..+++..|
T Consensus 153 k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 153 KSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555666777888888888888888887765
No 221
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=64.82 E-value=44 Score=31.65 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
.+|..+|..|+.+|..|..++..+..+...+......|+.+...|.
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 3466677777777777776666666665566666666666555553
No 222
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=64.68 E-value=11 Score=30.67 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLK 304 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ 304 (466)
..|.+|+.++.+|+.||.-|+.
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777777777777777754
No 223
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=64.52 E-value=40 Score=34.70 Aligned_cols=69 Identities=25% Similarity=0.404 Sum_probs=43.9
Q ss_pred HHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 012287 264 VRRMLSNRESARR-SRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA-KVKMA 337 (466)
Q Consensus 264 ~RRmLsNRESARR-SR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~-kl~ma 337 (466)
.=.-|+|||..=. +|.||+ .|. .++..|+...- -..+|..|++++..++.+|.+..+++..+.+ +++.+
T Consensus 129 ~LK~IR~~E~sl~p~R~~r~-~l~---d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa 199 (271)
T PF13805_consen 129 HLKSIRNREESLQPSRDRRR-KLQ---DEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEA 199 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHhH-HHH---HHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHH
Confidence 3356788887644 444444 333 33334443322 2457888999999999999999999988844 35444
No 224
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=64.48 E-value=20 Score=27.56 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 304 KRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 304 ~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
..+..+..++..|..+|..|+.++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666667777888888888877754
No 225
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=64.47 E-value=94 Score=37.51 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
-.|..|-.|.||+--..--+++-..++++-.|.-.|+.|+..|..++..|++++..+...+..|...-..|.
T Consensus 371 s~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~ 442 (1195)
T KOG4643|consen 371 SDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQ 442 (1195)
T ss_pred hHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999888888888888888888888888888888888888888888777766666655444443
No 226
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=64.42 E-value=75 Score=31.15 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
...+..||..|...|..+.+++..|...+..|..+-..|.+..
T Consensus 158 ~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq 200 (206)
T PF14988_consen 158 TRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQ 200 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666555443
No 227
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.00 E-value=96 Score=29.66 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
.|+.++..+......|...+..+..++..+..+=..|+++....
T Consensus 102 ~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 102 RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444433
No 228
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=63.70 E-value=72 Score=31.33 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
+|.++..|+.+...+...+..+......+......+..+|..|..+++.++.
T Consensus 139 ~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 139 AESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333233333334445555555555554443
No 229
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.70 E-value=38 Score=35.59 Aligned_cols=38 Identities=32% Similarity=0.442 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKa 325 (466)
|..-+.+.+.+|..|..++..|++++.++..+|..||.
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~ 107 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLRE 107 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 33444444444444444444444444444444444444
No 230
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=63.67 E-value=1.9e+02 Score=29.99 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
...++..+.++..++.+-....+++.+++++.......=..|+.+-..|...+..+..-|+++
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444444333333333333333433333343344444
No 231
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.64 E-value=1.7e+02 Score=29.39 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 279 ~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
+....+|+|++.+...|..|-..+..+|..+.+.+..++..=+.++.+-...
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~ 79 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKR 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455889999999999999999998888888887777654444444333333
No 232
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=63.46 E-value=62 Score=36.18 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 258 PVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 258 ~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
+.+--|.+|+... -..+.+|--+.+.+.+..+..-+.+-..|--++...+.+......+|+.++++.+.|+.+.+..
T Consensus 27 e~ef~rl~k~fed---~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i 103 (604)
T KOG3564|consen 27 EDEFIRLRKDFED---FEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLI 103 (604)
T ss_pred HHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4555666666543 2233344445555566677777788888889999999999999999999999999999999888
Q ss_pred HHHHHHH
Q 012287 338 EETVKRI 344 (466)
Q Consensus 338 E~~v~Rl 344 (466)
.++.+--
T Consensus 104 ~d~l~~~ 110 (604)
T KOG3564|consen 104 KDMLKCD 110 (604)
T ss_pred HHHHhcc
Confidence 7775543
No 233
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=62.90 E-value=1.2e+02 Score=27.91 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=39.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELET-------QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~-------qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
+++.+++..-+.+...-.+|++.++.|+. +|..|+.+...+..++..+..++..+ +..++.++..+
T Consensus 110 ~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f 182 (218)
T cd07596 110 DDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRF 182 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 33345555567777777777776666643 56666666666666666665555444 33455555554
No 234
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=62.84 E-value=1.4e+02 Score=28.37 Aligned_cols=81 Identities=23% Similarity=0.386 Sum_probs=50.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----------------------HHH
Q 012287 267 MLSNRESARRSRRRKQAHLTELETQVSQLRVENSS-------LLKRLTDISQKYN----------------------EAA 317 (466)
Q Consensus 267 mLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~-------L~~ql~~L~q~~~----------------------~l~ 317 (466)
+..=.|+||.-..+-+..|+++..+|...-.+... .+.+|.++.+.|. .+.
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~r 97 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLR 97 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456888888888888888888766655444444 4445544444332 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 318 VDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 318 ~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
.+-..|+.+-..|+..++..+++++|-..+
T Consensus 98 e~E~qLr~rRD~LErrl~~l~~tierAE~l 127 (159)
T PF05384_consen 98 EREKQLRERRDELERRLRNLEETIERAENL 127 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666677777777777776666544
No 235
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=62.64 E-value=1.4e+02 Score=28.29 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=12.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 267 MLSNRESARRSRRRKQAHLTELETQVSQLRV 297 (466)
Q Consensus 267 mLsNRESARRSR~RKq~~LeELE~qV~~Le~ 297 (466)
.|-+=+|+.-....-...+..|.....+|..
T Consensus 34 vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~ 64 (158)
T PF09744_consen 34 VLELLESLASRNQEHEVELELLREDNEQLET 64 (158)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3334444443333333333333333333333
No 236
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=62.46 E-value=83 Score=29.46 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
..+-.|.++-..|+..--...+++..++| -+.|+.+|.+|.++|+.|++.+..
T Consensus 47 eEVvrlKQrRRTLKNRGYA~sCR~KRv~Q-k~eLE~~k~~L~qqv~~L~~e~s~ 99 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRGYAQSCRVKRVQQ-KHELEKEKAELQQQVEKLKEENSR 99 (135)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677777777777788888765 457889999999999988777543
No 237
>PLN02320 seryl-tRNA synthetase
Probab=62.45 E-value=1.9e+02 Score=32.31 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccC
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYN---------EAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQG 353 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~---------~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~~ 353 (466)
..+.+|..+...|+.+...|+.+...+..+.. .+..+=+.|+.++..|+.+++..++-+.. ++..
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~------~~l~ 166 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL------EAQS 166 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHh
Confidence 34444455555555555555555555444433 33344455555555555555555443333 2334
Q ss_pred CCCCCCCCCC
Q 012287 354 SPEMSSMSMS 363 (466)
Q Consensus 354 ~~~~~~~~mp 363 (466)
++++..-.+|
T Consensus 167 iPN~~h~~VP 176 (502)
T PLN02320 167 IPNMTHPDVP 176 (502)
T ss_pred CCCCCCccCC
Confidence 4555555666
No 238
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=62.40 E-value=1.2e+02 Score=27.13 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 298 ENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 298 ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
....|..+++..++++..+..+|..|++++..|+....+.++...+-
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~ 97 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSE 97 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34445555666677777778888888888888877744555444443
No 239
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=62.28 E-value=1.8e+02 Score=30.26 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEET 340 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~ 340 (466)
++..|..++..+..++...+.++.+++++...+...=..++.+..+++.+++.++..
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555556666666666666665555555555555555555555555554
No 240
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=62.16 E-value=1.5e+02 Score=28.21 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRL 306 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql 306 (466)
-.+|..++...-+.|.+.+..=.+...+.|.++...+.|...+....
T Consensus 60 l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 60 LAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777778888888888888888888888888888877766655
No 241
>PRK12705 hypothetical protein; Provisional
Probab=62.03 E-value=2.1e+02 Score=31.99 Aligned_cols=6 Identities=17% Similarity=0.301 Sum_probs=2.8
Q ss_pred CCCCCC
Q 012287 360 MSMSSF 365 (466)
Q Consensus 360 ~~mp~~ 365 (466)
..|+-+
T Consensus 184 ~aiqr~ 189 (508)
T PRK12705 184 QAMQRI 189 (508)
T ss_pred HHHHHh
Confidence 345543
No 242
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=61.93 E-value=8.8 Score=29.28 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve 328 (466)
+..+|-..|+.|..++.+++.+...|..||..||.++-
T Consensus 8 qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 8 QNRELAKRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 44566677888888888888888888888888887764
No 243
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=61.89 E-value=1.8e+02 Score=29.18 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
..+..|+....++..+.....+....+..|=..||.++..+|.
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444455555555555543
No 244
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.85 E-value=69 Score=33.31 Aligned_cols=19 Identities=11% Similarity=0.115 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012287 316 AAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 316 l~~EN~~LKaqve~Lr~kl 334 (466)
+..++...+.+++.++.++
T Consensus 216 ~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 216 LLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 245
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=61.84 E-value=16 Score=33.27 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 297 VENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (466)
Q Consensus 297 ~ENs~L~~ql~~L~q~~~~l~~EN~~LKa 325 (466)
.|.+.|+.++.+|.++...|+.||..||.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566666666666677777765
No 246
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=61.63 E-value=13 Score=32.11 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
-|+.+++.|..+++.++.+|..|..++...+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467888888888888888888888877654
No 247
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.45 E-value=1.8e+02 Score=33.75 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNE 315 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~ 315 (466)
.+.+.+|+.+.+.|+.....|..++..+.++...
T Consensus 578 l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~ 611 (717)
T PF10168_consen 578 LKELQELQEERKSLRESAEKLAERYEEAKDKQEK 611 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666555444333
No 248
>PHA02562 46 endonuclease subunit; Provisional
Probab=61.34 E-value=1.6e+02 Score=31.74 Aligned_cols=8 Identities=25% Similarity=0.924 Sum_probs=4.8
Q ss_pred HHHHHHHh
Q 012287 70 FQRFLQEA 77 (466)
Q Consensus 70 FqrFLeE~ 77 (466)
|+.||++.
T Consensus 115 ~~~~i~~~ 122 (562)
T PHA02562 115 FQKYFEQM 122 (562)
T ss_pred HHHHHHHH
Confidence 45666663
No 249
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=60.91 E-value=38 Score=33.99 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
.||+.+..-..-.-.|..+|..|+++...|.-++.++.-+++.|
T Consensus 44 ~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 44 QLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34443333333333444444444444444444444444444443
No 250
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=60.71 E-value=97 Score=25.73 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAV 318 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~ 318 (466)
.++.++.+|..|...-..|..++..+..++..+..
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777666655444
No 251
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=60.35 E-value=60 Score=35.83 Aligned_cols=43 Identities=26% Similarity=0.337 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 302 L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
|..++..++.+...+..+|..|++.....+.+++..++.-++.
T Consensus 387 ~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 387 LQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666777777777777777776666554443
No 252
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=60.23 E-value=66 Score=34.43 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=20.9
Q ss_pred ehhhhhcCCCCCCCCcccchhhhhHHHhhcccccccccc
Q 012287 7 LFILFLTHPQTSKPKNKTARITKVTKIWRKMDRVFSVGE 45 (466)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Me~VfSvde 45 (466)
...|.|+.|. ..+......+.++|..+.-+|.+|+
T Consensus 11 ~A~l~~~~~~----~~~~~~~~~i~~~L~~~gi~~Gi~~ 45 (451)
T PF03961_consen 11 EAYLTLTPPY----GGKPLTLEEILEALRKKGIVYGIDE 45 (451)
T ss_pred EEEEEEEcCC----CCCcCCHHHHHHHHHHCCCCcccCH
Confidence 3344555552 2333356677778888877777763
No 253
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=60.17 E-value=1.1e+02 Score=32.69 Aligned_cols=28 Identities=7% Similarity=-0.033 Sum_probs=20.3
Q ss_pred CCChHHHH---HHHHHHHhHHHHHHHHhhhc
Q 012287 139 TQNLEDYQ---AVLKSKLNLACAAVALSRAS 166 (466)
Q Consensus 139 ~~dp~~Y~---a~LK~kLd~~cAAvA~~r~s 166 (466)
.+|+.+|. ..|+.+|....|-++..+|-
T Consensus 89 ~ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~ 119 (457)
T TIGR01000 89 VYDNGNEENQKQLLEQQLDNLKDQKKSLDTL 119 (457)
T ss_pred EECchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899986 56777887777777776663
No 254
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.80 E-value=63 Score=39.35 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 278 RRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 278 R~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
..+++..+.+|+..+..++.|..+..+.+..+......+...=..|++++++++..
T Consensus 537 ~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~ 592 (1293)
T KOG0996|consen 537 LKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSS 592 (1293)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333333334444444444443
No 255
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=59.66 E-value=39 Score=37.27 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
.-+++-+.+.++|+.+...|+.++..+.. ++..+.++|++|+..++..++.++.+
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~sa-------q~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNK-------QRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777776666555555444 44444445555554444444444433
No 256
>PF15058 Speriolin_N: Speriolin N terminus
Probab=59.56 E-value=17 Score=35.78 Aligned_cols=33 Identities=33% Similarity=0.347 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKAD 326 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaq 326 (466)
+.|-.+++.|-.||++|++++..+ .||.+||.-
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksa 40 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLI--------RENHELKSA 40 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHH
Confidence 455667777777777777766544 466666654
No 257
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.45 E-value=80 Score=35.94 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQ---KYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q---~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
.....|+.||-.|.++++.|++ +|.++..|++.|..+++-|..++..+
T Consensus 170 seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999988876 68888899999998888888777544
No 258
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=58.62 E-value=1.8e+02 Score=31.63 Aligned_cols=47 Identities=4% Similarity=0.119 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 300 SSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 300 s~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
..|..-+..+.+++..+..+-+.|..++++|++++..++.-+.++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555555555666666666667777777777776666665555544
No 259
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.31 E-value=1.5e+02 Score=35.90 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 295 LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 295 Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
|+.|...|...+..+++++..+..+=..|+.++..|+.++..+
T Consensus 820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~ 862 (1174)
T KOG0933|consen 820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV 862 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444444444444444444444444445555555555544433
No 260
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=58.14 E-value=26 Score=33.89 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEET 340 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~ 340 (466)
-+.=.|.|+..|+.+|..|..++..|. ....+|..+-.++..|..++-.++++
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li----~~Ar~Ne~~~~~~~~l~l~LL~a~sl 93 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELI----ENARENEAIFQRLHRLVLALLAARSL 93 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC--SH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 566678999999999999999998765 45678999999999998887666544
No 261
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=58.14 E-value=1.8e+02 Score=35.38 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 277 SRRRKQAHLTELETQVSQLRVEN-SSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 277 SR~RKq~~LeELE~qV~~Le~EN-s~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
+-++++..++.|+.+|..++.+- ..|..++...+.++..|..|+..|..++..|+.+.....
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567778888888887665 778888888888888888888888888888888776653
No 262
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=58.13 E-value=35 Score=27.78 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
.....+..++.+++.|+.||..|..++..+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5557788888888888888888888777654
No 263
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=57.85 E-value=61 Score=35.49 Aligned_cols=56 Identities=25% Similarity=0.373 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 279 RRKQAHLTELETQVSQ--------------LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 279 ~RKq~~LeELE~qV~~--------------Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.=|.+|-++|++++.. ...|.+.+..+|..|.++|....-||..|-..+++-|+.+
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaL 458 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQAL 458 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888887654 2345667888888888888888888888877776655544
No 264
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=57.78 E-value=32 Score=35.10 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 012287 295 LRVENSSLLKRLTDIS---QKYNEAAVDNRVLKADVE 328 (466)
Q Consensus 295 Le~ENs~L~~ql~~L~---q~~~~l~~EN~~LKaqve 328 (466)
+..||+.|+.++.++. .+...++.||..||..+.
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444444433 234456666666665443
No 265
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.61 E-value=1e+02 Score=24.95 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQK 312 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~ 312 (466)
.|++|..+|+.|......|...+..++..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666555555555555444433
No 266
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=57.54 E-value=52 Score=35.74 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HH-----------HHHHHHH---HHHHHHHHHHHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQL-----RV-----------ENSSLLK---RLTDISQKYNEAAVD 319 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~L-----e~-----------ENs~L~~---ql~~L~q~~~~l~~E 319 (466)
.++|.+||+...-+==||.|..=...|.||-.-|-.. +. -+..|++ +..+++.+-..|+..
T Consensus 226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~ 305 (411)
T KOG1318|consen 226 ALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLEST 305 (411)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhH
Confidence 3556666666667888888888888888887644332 11 1122222 223333344455566
Q ss_pred HHHHHHHHHHHHHHH
Q 012287 320 NRVLKADVETLRAKV 334 (466)
Q Consensus 320 N~~LKaqve~Lr~kl 334 (466)
|++|..++++|+.++
T Consensus 306 n~~L~~rieeLk~~~ 320 (411)
T KOG1318|consen 306 NQELALRIEELKSEA 320 (411)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666766666665444
No 267
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=57.49 E-value=1.7e+02 Score=27.44 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 312 KYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 312 ~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.+..+..++..|...++.+..++
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433333333333
No 268
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=57.40 E-value=1.8e+02 Score=35.25 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLT 307 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~ 307 (466)
-+...|++|+.++..++.+...|...+.
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777766666555544444
No 269
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=57.38 E-value=55 Score=33.95 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 269 SNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (466)
Q Consensus 269 sNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~ 317 (466)
=|.|+-+.+- +-....|..||+.|+..|+.+++++...+.+..+|.
T Consensus 67 y~~e~e~~sy---~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 67 YNKEFERQSY---SNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3555555443 345667777888888888888888877777766653
No 270
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=57.26 E-value=1.1e+02 Score=25.05 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 289 E~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
..++...+..|-.+.++|.+...+...|..+=..|+.+++.||.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455677788888888888888888888888999999988875
No 271
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=57.15 E-value=50 Score=28.78 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVEN-SSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 283 ~~LeELE~qV~~Le~EN-s~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
.|-..=|.+|..|+.-. .....++..|+.+...+..||..|+.++...+.
T Consensus 27 ~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 27 LYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555577777776322 224455666665555566666666666555443
No 272
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.82 E-value=1.3e+02 Score=33.33 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 265 RRMLSNRESARRSRRRKQAH----LTELETQVSQLRVENSSLLKRLTDISQKYN 314 (466)
Q Consensus 265 RRmLsNRESARRSR~RKq~~----LeELE~qV~~Le~ENs~L~~ql~~L~q~~~ 314 (466)
+-..+|=++++.+=.||.+. +++++.+...++.+|..|.+....+..++.
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLK 420 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44556666777766666554 344555566666666666655555444443
No 273
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=56.58 E-value=1.6e+02 Score=27.13 Aligned_cols=53 Identities=11% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
++|+.|..++++...-......++.+++.....+..+=..+..-+..|+.|+.
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777766666666666666666666555555555555555555543
No 274
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.22 E-value=1.1e+02 Score=32.23 Aligned_cols=37 Identities=32% Similarity=0.473 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 309 ISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 309 L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
|.+-+.....+|..|+.++..|++++..++.=++-|.
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR 106 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLR 106 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 3344455567777777777777777766665544443
No 275
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=56.14 E-value=29 Score=38.17 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 309 ISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 309 L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
|+.++....+||.+|+.++++|+
T Consensus 277 LE~rv~~~taeNqeL~kkV~~Le 299 (472)
T KOG0709|consen 277 LESRVSAFTAENQELQKKVEELE 299 (472)
T ss_pred HhhhhhhcccCcHHHHHHHHHHh
Confidence 34444445555555555555554
No 276
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=56.07 E-value=56 Score=28.39 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLN 348 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln 348 (466)
+...|+.||+.|..+.+. .....+|...|.+.++=-..+ .+++++++|...+
T Consensus 31 ~~~kL~~en~qlk~Ek~~-----~~~qvkn~~vrqknee~~~~~-sr~~V~d~L~q~g 82 (87)
T PF10883_consen 31 QNAKLQKENEQLKTEKAV-----AETQVKNAKVRQKNEENTRRL-SRDSVIDQLQQHG 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHhhccC-CHHHHHHHHHHcC
Confidence 344455555554443333 234567777777777643332 4567788886544
No 277
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=56.00 E-value=26 Score=34.18 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRL 306 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql 306 (466)
|-.|.+|...++ -+..++++.||+.+|..|+.+...+.+.+
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~ 129 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFF 129 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777766665 35556788888888888777544444333
No 278
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=55.88 E-value=39 Score=35.00 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 270 NRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 270 NRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
+-+-++.-=..++..+.+++.++..|+.+......+...++
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~ 269 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELE 269 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445566666666666666665555444444443
No 279
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=55.85 E-value=55 Score=32.01 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 305 RLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 305 ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
+|..|++++..+...|-.+...+..|++++.
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~ 206 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIE 206 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555666555555555555543
No 280
>PRK04863 mukB cell division protein MukB; Provisional
Probab=55.54 E-value=1.8e+02 Score=36.52 Aligned_cols=30 Identities=3% Similarity=0.059 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 303 LKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 303 ~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
..++..++.++..+..+-..+..++..+++
T Consensus 389 EeeLeeLqeqLaelqqel~elQ~el~q~qq 418 (1486)
T PRK04863 389 EEEVDELKSQLADYQQALDVQQTRAIQYQQ 418 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 281
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=55.43 E-value=59 Score=27.78 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
-.+|..++..-+.|...|..-+..|+.++.....-|..|..+...++.
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666666666666666666666665543
No 282
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=55.12 E-value=1e+02 Score=32.33 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (466)
Q Consensus 297 ~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqv 327 (466)
.|...|..++.++++++..+..||.+|...+
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444455555555555555555554444433
No 283
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=54.78 E-value=73 Score=33.15 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETV 341 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v 341 (466)
.+|..|+.+...|...+..++++|.....+=..+|.....|+.++....+.+
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444555555666666655554433
No 284
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=54.68 E-value=1.2e+02 Score=31.84 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 316 AAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 316 l~~EN~~LKaqve~Lr~kl~maE 338 (466)
+..|=+.||+=|++++.-|...+
T Consensus 122 ARkEIkQLkQvieTmrssL~ekD 144 (305)
T PF15290_consen 122 ARKEIKQLKQVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhchhh
Confidence 34455666777777766555443
No 285
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=54.51 E-value=55 Score=27.52 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 295 LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 295 Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
...+...+..++..++++...+..||..|+.++..|..
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44556677777888888888889999999999988843
No 286
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.49 E-value=52 Score=29.65 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 293 SQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 293 ~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
..|-.+.-+|...|.+|.++......||-.||.+-+.|-+
T Consensus 59 aRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQ 98 (120)
T KOG3650|consen 59 ARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQ 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 4444445555555555555555555555555555555543
No 287
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=54.26 E-value=2.6e+02 Score=31.09 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDI 309 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L 309 (466)
.++..++.++..+..++..+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~l 86 (475)
T PRK10361 67 NEVRSLQSINTSLEADLREV 86 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444443333333333
No 288
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=54.09 E-value=1.1e+02 Score=29.47 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012287 292 VSQLRVENSSLLKRLTDISQK 312 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q~ 312 (466)
+.+....|..|...+..++.+
T Consensus 90 LEq~~~~N~~L~~dl~klt~~ 110 (182)
T PF15035_consen 90 LEQARKANEALQEDLQKLTQD 110 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333
No 289
>PRK10963 hypothetical protein; Provisional
Probab=54.00 E-value=38 Score=33.13 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEET 340 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~ 340 (466)
+.=.|.|+..|+.+|..|..++..|- ....+|..+-.++..|..++-.++++
T Consensus 39 VSL~ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l~l~Ll~a~~~ 90 (223)
T PRK10963 39 VSLVEWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRLAAADSL 90 (223)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 34457788888888888888887664 45678888888888888777555443
No 290
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=53.79 E-value=90 Score=33.47 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD----NRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~E----N~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
..+-+|..+..+|..+...|+.+...+.++...+... -..|++++.+|..+++..+...+.+..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777778888888888888877777664322 247888888888888888777766643
No 291
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=53.50 E-value=1.2e+02 Score=34.64 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l 316 (466)
..|+.+|.++..-+.+......++.+++++-.-|
T Consensus 100 ~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL 133 (632)
T PF14817_consen 100 KEIESREREVSRQEASREQMLDKISDSRHKQLLL 133 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333
No 292
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.19 E-value=1e+02 Score=29.00 Aligned_cols=29 Identities=17% Similarity=0.432 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 316 AAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 316 l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
...++..++.+++.|..+++.++.-++.+
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~L 180 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEAL 180 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777666655554
No 293
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=53.15 E-value=1.6e+02 Score=33.34 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 300 SSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 300 s~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
..|..++..+...+..++.|...||++...|+..++.+..
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3355555556666666777777777777777777766653
No 294
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.13 E-value=52 Score=26.50 Aligned_cols=30 Identities=17% Similarity=0.413 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKY 313 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~ 313 (466)
.+..++..+..++.||+.|+..+..+.+..
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777777776666665443
No 295
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=53.10 E-value=71 Score=32.09 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 293 SQLRVENSSLLKRLTDISQ-KYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 293 ~~Le~ENs~L~~ql~~L~q-~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
-+++..-..++.++..+++ ++..+..||..|+.+++.++.++. ++ +++.+..
T Consensus 97 ~QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr--~e-i~~~~a~ 149 (220)
T KOG3156|consen 97 YQQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLR--HE-ISKTTAE 149 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHhcchh
Confidence 3444445556666655544 889999999999999999987653 33 4444443
No 296
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=53.01 E-value=1.6e+02 Score=25.85 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
.+.+...+.+.+..|..|...+..-++-.......+..++.+.+..+.+++
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik 84 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777777777776666666666667777777776655543
No 297
>PRK14127 cell division protein GpsB; Provisional
Probab=52.93 E-value=36 Score=30.57 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 311 QKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 311 q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
+.|..+..||..|+.++..|+.++...+.
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666555544444
No 298
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=52.65 E-value=4.6 Score=45.54 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 012287 272 ESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE---AAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 272 ESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~---l~~EN~~LKaqve~Lr~kl 334 (466)
|+.-..=++|..-+.+|..+|..|+..|..|..+...|..++.. +..+...++.++..|..++
T Consensus 314 E~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 314 ENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455788889999999999999999888888777665544 3334444455555554443
No 299
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=52.56 E-value=1.5e+02 Score=26.69 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.+...|+.+...-...|..+.++...|...|..|-.+|+.|...+
T Consensus 26 ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 26 AKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555566666666666666666665444
No 300
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=52.54 E-value=1.3e+02 Score=31.95 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLR 296 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le 296 (466)
..++.|+++++|...-..=+||..++.-=+..+.+|+
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr 156 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLR 156 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 4556668889988777766677544433333444443
No 301
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=52.33 E-value=1.9e+02 Score=28.87 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRV--------ENSS-LLKRL---TDISQKYNEAAVDNRVLKADV 327 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~--------ENs~-L~~ql---~~L~q~~~~l~~EN~~LKaqv 327 (466)
+.-|.||+...-+.-|..|.-=+.=.++|..-|-+-+. -|.- |.+.+ ..|.++....+.|-..|++++
T Consensus 56 ~syk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v 135 (229)
T KOG1319|consen 56 ESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV 135 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455665555555555554444444566554433222 1111 22222 233344444555666677777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012287 328 ETLRAKVKMAEETVKRI 344 (466)
Q Consensus 328 e~Lr~kl~maE~~v~Rl 344 (466)
.+|+-=....|.|++..
T Consensus 136 tAL~iIk~~YEqM~~~~ 152 (229)
T KOG1319|consen 136 TALKIIKVNYEQMVKAH 152 (229)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77755444444444433
No 302
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=51.84 E-value=76 Score=33.31 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQL 295 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~L 295 (466)
...+|.-|..+||+-.++-++++.++...+..++.+|
T Consensus 273 ~~~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i 309 (387)
T PF07767_consen 273 KKNKKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQI 309 (387)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556777787777777777766555555554443
No 303
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=51.75 E-value=1.3e+02 Score=29.55 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 302 L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
|..+-..+-.+...+...+..|+++|..|+++.
T Consensus 180 Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~ 212 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIEVACEELEQEIEQLKRKA 212 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444433
No 304
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.29 E-value=1.1e+02 Score=36.34 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
|+++|...+..++.....|-.++..++|+...+..||.+|.+++..+
T Consensus 651 ~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 651 YHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444433
No 305
>PF13166 AAA_13: AAA domain
Probab=51.09 E-value=2.5e+02 Score=31.30 Aligned_cols=62 Identities=19% Similarity=0.376 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
++.++...+..+..+...+...+..+..+...+..+-..++.++.+|++++...+..++++.
T Consensus 404 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN 465 (712)
T PF13166_consen 404 LIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRIN 465 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34455555555666666666677777777777777777888888888888775555555553
No 306
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=50.87 E-value=1.9e+02 Score=27.66 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 289 E~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
+.++..|+.....+..++..|...+..+...=..++.+...|..+...+
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444333
No 307
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=50.63 E-value=64 Score=28.87 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
+..-|..-|-+-+..+..|..+|..-.+.+..+..||..|.-+-..|..++...
T Consensus 13 Q~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~L 66 (102)
T PF10205_consen 13 QNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVL 66 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666777777777777777777777777777777775555433
No 308
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=50.57 E-value=1.4e+02 Score=25.57 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 312 KYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 312 ~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
++.....|-..|+.-+..||.+|...-++.++|.
T Consensus 13 kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq 46 (76)
T PF11544_consen 13 KLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQ 46 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555556666666555555555543
No 309
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=50.52 E-value=1.7e+02 Score=26.84 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
...|..-..=+-|-++|+.+|+.|+-+...+..-|..|..+|.-|+..++
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLk 63 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALK 63 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566667777766665555555555555555555544443
No 310
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=50.28 E-value=1.5e+02 Score=24.90 Aligned_cols=58 Identities=14% Similarity=0.296 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAA-----VDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~-----~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
.|..-+..|+.|-..|+.++..|+.+|..+. ..-+.|..+++.|-.++...-+.|.+|
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666655555543 345666667777766665555555554
No 311
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.15 E-value=2.1e+02 Score=31.23 Aligned_cols=47 Identities=11% Similarity=0.026 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
+..+..-...+..++..+..+...+..+=++|+.++..|++++....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666667777777777777777777777777777777765543
No 312
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=50.00 E-value=2e+02 Score=25.98 Aligned_cols=78 Identities=24% Similarity=0.244 Sum_probs=56.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 265 RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
.-+-.|+.-|.+.=. ++..++++..++..+-.+...|..++..+.+++..+ ..+-....=...|+..+..+|+--+.+
T Consensus 38 ~l~~~n~~lAe~nL~-~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 38 ELLAENEELAEQNLS-LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEESEEL 115 (150)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777765533 357788888888888888888888888888888877 666666666666777787887766666
No 313
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.95 E-value=87 Score=35.45 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKa 325 (466)
.|+..++.+-..+......|..++.....++..+..+|..||.
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555544
No 314
>PRK02224 chromosome segregation protein; Provisional
Probab=49.84 E-value=3e+02 Score=31.65 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRV 297 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ 297 (466)
+..+.+|+.++..|+.
T Consensus 508 ~~~l~~l~~~~~~l~~ 523 (880)
T PRK02224 508 EDRIERLEERREDLEE 523 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 315
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=49.82 E-value=1.6e+02 Score=25.76 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQK 312 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~ 312 (466)
-|=...+.+|..|+.++..|..++..|+.+
T Consensus 42 sYe~rwek~v~~L~~e~~~l~~E~e~L~~~ 71 (87)
T PF12709_consen 42 SYEARWEKKVDELENENKALKRENEQLKKK 71 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 316
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=49.54 E-value=1.4e+02 Score=33.16 Aligned_cols=61 Identities=31% Similarity=0.431 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRV-----------ENSSLLKRLTDI------------------------SQKYNEAAVDNRVLKAD 326 (466)
Q Consensus 282 q~~LeELE~qV~~Le~-----------ENs~L~~ql~~L------------------------~q~~~~l~~EN~~LKaq 326 (466)
.+.+..|-.+++.|+. ||..|+.||.+. ++.+..+..||..|+.+
T Consensus 384 ~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kq 463 (488)
T PF06548_consen 384 SRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQ 463 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665555555 888888888653 34455667899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012287 327 VETLRAKVKMAEETVK 342 (466)
Q Consensus 327 ve~Lr~kl~maE~~v~ 342 (466)
|+.|.++-++-=.+++
T Consensus 464 iekLK~kh~~Ei~t~k 479 (488)
T PF06548_consen 464 IEKLKRKHKMEISTMK 479 (488)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887665444333
No 317
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.50 E-value=83 Score=26.85 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 302 LLKRLTDISQKYNEAAVDNRVLKADV 327 (466)
Q Consensus 302 L~~ql~~L~q~~~~l~~EN~~LKaqv 327 (466)
|..++..++.+-..+..+|..|+.++
T Consensus 73 l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 73 LMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444455555555555544
No 318
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.43 E-value=61 Score=33.06 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
.++.++.+|+.|...|...+...+ ....+.++.|..+++.|+
T Consensus 61 s~Q~~~~~L~~ev~~~~~~~~s~~---~~~~t~~~~ie~~l~~l~ 102 (247)
T COG3879 61 SLQKKVNTLAAEVEDLENKLDSVR---RSVLTDDAALEDRLEKLR 102 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHH
Confidence 333444444444444444443333 222255555666666664
No 319
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.03 E-value=1.4e+02 Score=28.07 Aligned_cols=48 Identities=27% Similarity=0.297 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
..+|..++-.-+.|...|...-..=.++...+..|...|+.++.++|.
T Consensus 63 t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 63 TSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333223344566666777777777776654
No 320
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.96 E-value=1.2e+02 Score=35.98 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 272 ESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (466)
Q Consensus 272 ESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve 328 (466)
..=.--+++-...++.|..++..|+.||+.|..+++........+..++..||.++.
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333444444555555555555555555555555555555555545544444444
No 321
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=48.66 E-value=1.4e+02 Score=35.22 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSS---------------LLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~---------------L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
+-.++++|||+++.-|+.|... .-..+.+++.++..++.|=++|.+.-++|++......+
T Consensus 53 ~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E 127 (829)
T KOG2189|consen 53 NEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLE 127 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445667777777666666554 12334444444444444444444444444444333333
No 322
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.65 E-value=1.3e+02 Score=32.95 Aligned_cols=81 Identities=25% Similarity=0.326 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh-ccCccccCCCCC
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD----NRVLKADVETLRAKVKMAEETVKRIT-GLNPLLQGSPEM 357 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~E----N~~LKaqve~Lr~kl~maE~~v~Rl~-~ln~~l~~~~~~ 357 (466)
..+-+|+.+...|..+-+.|+.+-..+.++....... -..|++++..|..+++-++.-.+.+. -++.++..++++
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi 108 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNI 108 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCC
Confidence 3445555555555555555555555555555422221 24466666666666655555444443 223445555666
Q ss_pred CCCCCC
Q 012287 358 SSMSMS 363 (466)
Q Consensus 358 ~~~~mp 363 (466)
....+|
T Consensus 109 ~~~~VP 114 (429)
T COG0172 109 PHESVP 114 (429)
T ss_pred CccccC
Confidence 666666
No 323
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=48.56 E-value=1.2e+02 Score=27.60 Aligned_cols=7 Identities=43% Similarity=0.714 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 012287 283 AHLTELE 289 (466)
Q Consensus 283 ~~LeELE 289 (466)
+|+..|+
T Consensus 81 ~~i~~~~ 87 (139)
T PF13935_consen 81 QRIAELE 87 (139)
T ss_pred HHHHHHH
Confidence 3333333
No 324
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.51 E-value=2.5e+02 Score=34.40 Aligned_cols=9 Identities=11% Similarity=0.637 Sum_probs=5.9
Q ss_pred HHHHHHHHh
Q 012287 69 AFQRFLQEA 77 (466)
Q Consensus 69 aFqrFLeE~ 77 (466)
.|++||+++
T Consensus 664 ~~~k~ie~a 672 (1311)
T TIGR00606 664 VYSQFITQL 672 (1311)
T ss_pred HHHHHHHHH
Confidence 566666666
No 325
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=48.44 E-value=34 Score=37.54 Aligned_cols=57 Identities=25% Similarity=0.274 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVK 342 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~ 342 (466)
++|..+|..|..+|..|+.++..+.-++..+..+|+-|+.--..+.++...-|+.+.
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfis 102 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFIS 102 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHH
Confidence 567788888999999999999999999999999998888766666666655555544
No 326
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=48.34 E-value=1.2e+02 Score=31.86 Aligned_cols=16 Identities=6% Similarity=-0.087 Sum_probs=11.6
Q ss_pred CchhhHHHHHHHHhcC
Q 012287 64 SESEWAFQRFLQEAQQ 79 (466)
Q Consensus 64 s~SEWaFqrFLeE~~~ 79 (466)
+-.+|.-|+|+-.+..
T Consensus 65 s~~dn~~e~~~~~e~~ 80 (294)
T KOG4571|consen 65 SVPDNMTEKMDLKEFA 80 (294)
T ss_pred ccccccchhhHHHhhc
Confidence 5568999998766543
No 327
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=47.98 E-value=1.5e+02 Score=29.27 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
.+-.||.+|..|+..-..+...+. .-...|..|+.++..|.+.++..|.-++++..
T Consensus 80 lvinlE~kvD~lee~fdd~~d~l~-------~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~ 135 (189)
T TIGR02132 80 LVINLEEKVDLIEEFFDDKFDELE-------AQQEQAPALKKDVTKLKQDIKSLDKKLDKILE 135 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhCchHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666554444333333 22345666777777777777666666666644
No 328
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.82 E-value=84 Score=35.79 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAHLT----ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~Le----ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
.|.|..|--+.|-.+-+.+-.++...+. .+|.+--.|+.|...++-+-+.|-++|..|+.||-.|..+|..||+
T Consensus 114 neLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 114 NELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 3566666666665554444444433332 3455555666677777777777777777777777777777766654
No 329
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=47.78 E-value=1.9e+02 Score=31.64 Aligned_cols=94 Identities=20% Similarity=0.364 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 258 PVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQL--RVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 258 ~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~L--e~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
|.+.++.|-++.-=+-=.-.|+|=-+.+.|--..|+.| +.|.+.|...+..+++-|.+|..-|+.|..+... +..
T Consensus 303 P~~~~el~~~l~~V~~~~~vr~~ltaemAd~~~~ik~llvrAEDaRl~~d~~~m~k~y~~l~~~n~~l~~~~~~---R~~ 379 (431)
T PF14782_consen 303 PDEMEELREILEKVDELNEVRQRLTAEMADHSNLIKSLLVRAEDARLMGDMKNMRKYYAELYDLNRDLINEYKI---RCN 379 (431)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---Hhh
Confidence 66777777666544445556777777888877777764 6899999999999999999999999999877654 566
Q ss_pred HHHHHHHHHhccCccccCC
Q 012287 336 MAEETVKRITGLNPLLQGS 354 (466)
Q Consensus 336 maE~~v~Rl~~ln~~l~~~ 354 (466)
-.+++++.|+.+|.+++..
T Consensus 380 N~~~l~~~lk~vn~~iq~a 398 (431)
T PF14782_consen 380 NHEELLSSLKEVNQIIQKA 398 (431)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6788899999999888754
No 330
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=47.69 E-value=2.3e+02 Score=31.86 Aligned_cols=9 Identities=22% Similarity=0.630 Sum_probs=5.8
Q ss_pred HHHHHHHHh
Q 012287 69 AFQRFLQEA 77 (466)
Q Consensus 69 aFqrFLeE~ 77 (466)
.|+.||++.
T Consensus 134 ~~~~~i~~i 142 (650)
T TIGR03185 134 IWDEFINEL 142 (650)
T ss_pred HHHHHHHHh
Confidence 356788863
No 331
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.67 E-value=65 Score=27.50 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRL 306 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql 306 (466)
+..|..++..|+.+|..|..++
T Consensus 77 i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 77 IEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444443
No 332
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.65 E-value=93 Score=37.29 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 273 SARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE 315 (466)
Q Consensus 273 SARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~ 315 (466)
-+..-=+||...+++|++..+.|..+...+..++.+|+++...
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445677777777777777777777777777777777654
No 333
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=47.64 E-value=99 Score=34.81 Aligned_cols=44 Identities=25% Similarity=0.334 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKAD 326 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaq 326 (466)
+.|..+..+...++.||..|..+|.+++++...+..|+.+|.+-
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~ 262 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEH 262 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44455556666777888888888888888877777777655443
No 334
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=47.60 E-value=81 Score=27.93 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
.||..+++-.+.|-.-|++.+++ +..+|+.|+.++..++
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~e-------le~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSE-------LEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 46666666666666655555544 5688888888887763
No 335
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=47.59 E-value=1.5e+02 Score=24.79 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
+-+..+..-..|...+....++...|...+..|-.++..|..++
T Consensus 22 q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 22 QQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555544
No 336
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=47.57 E-value=1.6e+02 Score=33.11 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDI---SQ----KYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L---~q----~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
.++.||.++..|+.+...|..++..- .. +...+..+=..++.+++.+..+-...
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l 624 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEA 624 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777776666666431 00 23333444445555555554443333
No 337
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=47.50 E-value=1.2e+02 Score=26.84 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 295 LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 295 Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
|...+..|..++..+.++...+...+..+++++..|+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 338
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=47.38 E-value=52 Score=27.70 Aligned_cols=32 Identities=16% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 306 LTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 306 l~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
|..++.++..++-||-.||.++...|+++.-+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~a 41 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHA 41 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 339
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=47.28 E-value=79 Score=35.73 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=27.1
Q ss_pred HHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 261 AKRVRRMLSNRESARRSRRR---KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE 315 (466)
Q Consensus 261 ~KR~RRmLsNRESARRSR~R---Kq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~ 315 (466)
.|..|-..+-..|-++-++- =+++|.+|+.+-++|+.||..|+.||..+..+...
T Consensus 284 QRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~ 341 (655)
T KOG4343|consen 284 QRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQR 341 (655)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcc
Confidence 34444344444444443332 23445555556666666666666666555544443
No 340
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.23 E-value=1.6e+02 Score=34.05 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
-.+++.+|..|+.+-+....++..++++...+...-..|..+++....+- +.+++|+..
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Q---e~L~~R~~~ 618 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQ---EKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 45677788888888888778888888877777777777777777665543 334444443
No 341
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=46.91 E-value=1.5e+02 Score=31.67 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 318 VDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 318 ~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
.+=..+++++..++.++..+++.+++..
T Consensus 291 ~~l~~~~~~l~~~~~~l~~a~~~l~~~~ 318 (457)
T TIGR01000 291 QEITDLNQKLLELESKIKSLKEDSQKGV 318 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 3344455555555555555555555554
No 342
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.86 E-value=1.3e+02 Score=36.86 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 012287 271 RESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPL 350 (466)
Q Consensus 271 RESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~ 350 (466)
=+.++-+=.+...++.+....+..|+.+...+..++......+..+..+-+.|+.++..+|+++..+.......++-+.+
T Consensus 523 ~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kV 602 (1293)
T KOG0996|consen 523 VEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKV 602 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 34444444555566666666777777777777777777788888888888888899999999998887755555555554
Q ss_pred ccC
Q 012287 351 LQG 353 (466)
Q Consensus 351 l~~ 353 (466)
|.+
T Consensus 603 l~a 605 (1293)
T KOG0996|consen 603 LDA 605 (1293)
T ss_pred HHH
Confidence 443
No 343
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=46.47 E-value=1.3e+02 Score=32.60 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=30.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVL 323 (466)
Q Consensus 261 ~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~L 323 (466)
+||.|.+++.-|.- |+++.+|..+-..-+..|+.|...|.+++..-.++...++.+...|
T Consensus 113 E~khrKli~dLE~d---Re~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl 172 (561)
T KOG1103|consen 113 EKKHRKLIKDLEAD---REAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKL 172 (561)
T ss_pred HHHHHHHHHHHHHH---HHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 2334444444444456677777777777765554444444433333
No 344
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=46.43 E-value=1.5e+02 Score=29.58 Aligned_cols=21 Identities=10% Similarity=0.223 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012287 319 DNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 319 EN~~LKaqve~Lr~kl~maE~ 339 (466)
++..=+.+++..+..+..++.
T Consensus 140 ~g~is~~~~~~a~~~~~~a~~ 160 (334)
T TIGR00998 140 KGLISREELDHARKALLSAKA 160 (334)
T ss_pred CCCcCHHHHHHHHHHHHHHHH
Confidence 333334444444444444443
No 345
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=46.34 E-value=60 Score=34.38 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 311 QKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 311 q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
+.|..+..||.+||+++..|++++...+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e 84 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYE 84 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666655555555554443
No 346
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=46.22 E-value=2.5e+02 Score=26.18 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q 012287 270 NRESARRSRRRKQAHLTELE--TQVSQLRVENSSLLKRLTD---------------------ISQKYNEAAVDNRVLKAD 326 (466)
Q Consensus 270 NRESARRSR~RKq~~LeELE--~qV~~Le~ENs~L~~ql~~---------------------L~q~~~~l~~EN~~LKaq 326 (466)
+...--..+.+++..+.+-- ....+|+.||..|..++.+ +.++.+.+..++..|+.+
T Consensus 20 ~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~ 99 (177)
T PF13870_consen 20 HQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQE 99 (177)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444443322 2344566666666555533 344555566777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012287 327 VETLRAKVKMAEETVKRI 344 (466)
Q Consensus 327 ve~Lr~kl~maE~~v~Rl 344 (466)
+......+...++-+.++
T Consensus 100 l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 100 LKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 776666665555544443
No 347
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.11 E-value=1.9e+02 Score=29.25 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=31.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 265 RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
|=.++-|+-++---.+|..++.. ++.+...|..++..++.+.... |+.||++++...
T Consensus 152 K~vlk~R~~~Q~~le~k~e~l~k-------~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 152 MGVIKRRDQIQAELDSKVEALAN-------KKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33455555444444444444444 4444455556666666555554 667888888763
No 348
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=45.73 E-value=1.5e+02 Score=28.43 Aligned_cols=23 Identities=13% Similarity=0.380 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 012287 324 KADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 324 Kaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
|.++++|.++++..|..++++..
T Consensus 124 r~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888888877777643
No 349
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=45.71 E-value=88 Score=34.62 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~ 329 (466)
|+.+.+.+...+..|+.....+..++..++.+...+..+-++|+.+++.
T Consensus 444 k~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 444 KLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555555555555555553
No 350
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=45.61 E-value=3.1e+02 Score=33.53 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 293 SQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 293 ~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
.++-..|..|..++....++.+.+..+|...+.++..+++...-.++.+.-+.+
T Consensus 261 ~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~ 314 (1109)
T PRK10929 261 VAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGV 314 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334456899999999999999999999999999999999888877777776643
No 351
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=45.60 E-value=58 Score=30.55 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDIS------Q--KYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~------q--~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
-++.|+.++..|+.+-..+..++.... + +|+....+-..|..++..|+.++..|
T Consensus 12 g~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 12 ARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTG 73 (158)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455677777777766666655553332 2 35556666666677777776655544
No 352
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=45.34 E-value=3.5e+02 Score=27.84 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
+..-+-....+|..+.+++...++....+..+...|+++|+.|+.+..
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455566899999999999999999999999999999999987765
No 353
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=45.25 E-value=3.5e+02 Score=27.56 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l 316 (466)
+.+.++..++.+...+..++..+..+...+
T Consensus 200 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 229 (423)
T TIGR01843 200 ELERERAEAQGELGRLEAELEVLKRQIDEL 229 (423)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333
No 354
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=45.24 E-value=93 Score=35.24 Aligned_cols=44 Identities=27% Similarity=0.465 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve 328 (466)
|++|+.++..++.+...|...+..+..+......++.+|.+++.
T Consensus 337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554444444444444444444
No 355
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=45.24 E-value=1.5e+02 Score=28.55 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEA-AVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l-~~EN~~LKaqve~Lr~kl~m 336 (466)
..++.|+..++.|....+.+...+..+..++... ..+=.+|+.++..|+.-+.|
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~em 133 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEM 133 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777777776665554322 22345555555555444433
No 356
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=45.17 E-value=2.4e+02 Score=36.44 Aligned_cols=57 Identities=32% Similarity=0.431 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTD-------ISQKYNEAAVDNR-------VLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~-------L~q~~~~l~~EN~-------~LKaqve~Lr~kl~maE~~v~R 343 (466)
++-.++.+|+.+|..|..++.+ +....+.+...++ +|+..++++...++..|+..-|
T Consensus 1481 e~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr 1551 (1930)
T KOG0161|consen 1481 ELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLR 1551 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3333444444444444444433 3333444444444 4444444444444444444433
No 357
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=44.90 E-value=2.1e+02 Score=27.07 Aligned_cols=69 Identities=20% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELETQ-------VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~q-------V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
+++.+++.+-+.|...-.||++.++.|... +..++.|...+..++..+++++..+ +..++.+++.....
T Consensus 128 ~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~i---s~~~k~E~~rf~~~ 203 (236)
T PF09325_consen 128 NRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEI---SENIKKELERFEKE 203 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
No 358
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.56 E-value=1.5e+02 Score=25.17 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRL 306 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql 306 (466)
++|.+||.++..-+.-...|...+
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~l 31 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDAL 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666665555444444433
No 359
>PF14282 FlxA: FlxA-like protein
Probab=44.55 E-value=1.7e+02 Score=25.67 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENS 300 (466)
Q Consensus 287 ELE~qV~~Le~ENs 300 (466)
.|+.++..|+.+..
T Consensus 23 ~L~~Qi~~Lq~ql~ 36 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQ 36 (106)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444333333
No 360
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.43 E-value=3.2e+02 Score=33.41 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
+....+.|.-++.+|+.|...+..++..+..++..+..++..|++.+......+..+++
T Consensus 813 ~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~ 871 (1174)
T KOG0933|consen 813 RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQA 871 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 33455667778888888888888888888888888888888887776665554444433
No 361
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=44.19 E-value=1.9e+02 Score=33.02 Aligned_cols=64 Identities=27% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHH------
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTD----------------------------ISQKYNEAAVDNRVLKADV------ 327 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~----------------------------L~q~~~~l~~EN~~LKaqv------ 327 (466)
+..+.+|+.++..|+.++..|..+|.. -...+..|..||..|++++
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q ss_pred --------------------HHHHHHHHHHHHHHHHHh
Q 012287 328 --------------------ETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 328 --------------------e~Lr~kl~maE~~v~Rl~ 345 (466)
..|+.++..++.-..||.
T Consensus 589 ~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLk 626 (722)
T PF05557_consen 589 NSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLK 626 (722)
T ss_dssp T----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 362
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=43.87 E-value=1.1e+02 Score=25.74 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDN 320 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN 320 (466)
|...|..|..|+..|..++...++++..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999988888877666554
No 363
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=43.87 E-value=53 Score=33.78 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
-++.|+.++..|+.||..|+.++..++
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~ 59 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQ 59 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666655555554443
No 364
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=43.77 E-value=1.1e+02 Score=26.66 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
|...-.||-+|+.++..++.-+ ...+-..|-+++..|+.+
T Consensus 46 vtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 4445567777777776665444 444666666777777643
No 365
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=43.38 E-value=2.3e+02 Score=27.22 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN-RVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN-~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
+.+.+...++..|+.+...|...+..+.+++.-+..+| .+++..+++|+.++.....++..++
T Consensus 72 k~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~ 135 (157)
T COG3352 72 KQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVI 135 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778889999999999999999999999999999888 4556679999999887777666654
No 366
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=43.29 E-value=3.2e+02 Score=26.56 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 302 L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
+..++..+++++..+.-++.+|..++..|.+.
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666544
No 367
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=43.17 E-value=2.2e+02 Score=29.99 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAV--DNRVLKADVETL 330 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~--EN~~LKaqve~L 330 (466)
+++..+..|+.+...+..++..++++...+.. .+.-+-++++.|
T Consensus 90 ~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyL 135 (372)
T PF04375_consen 90 QQQEQLQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYL 135 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHH
Confidence 44455566666666666666666666665553 344455666666
No 368
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=43.06 E-value=2.1e+02 Score=25.89 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~ 329 (466)
++.+......+..++.....|..-=...++++..+..+|..|+.+|..
T Consensus 13 ~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 13 QAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 334444444444444433333332233445555666777777776664
No 369
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=42.92 E-value=1.5e+02 Score=29.90 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 272 ESARRSRRRKQAHLT----ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (466)
Q Consensus 272 ESARRSR~RKq~~Le----ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqv 327 (466)
+|+=---+||.-+.+ .++.+++.|+.++..|..+++.+..++...+..|.++++-.
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ie 229 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIE 229 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 667777788865554 57788999999999999999998888877776666665533
No 370
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=42.63 E-value=75 Score=29.43 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLK 324 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LK 324 (466)
-+..|+.|...=-.++..|++++..+...|..|.
T Consensus 95 ~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 95 VVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333333444444444443
No 371
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=42.40 E-value=2.3e+02 Score=24.52 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 012287 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA---DVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKa---qve~Lr~kl~maE~~v~Rl 344 (466)
+..+...-..|...+..+.+++..+...-..|.. +|..|++-+...++-+++|
T Consensus 37 Y~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~L 92 (99)
T PF10046_consen 37 YKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKEL 92 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433333333 6666666666555555555
No 372
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=42.38 E-value=4.4e+02 Score=31.12 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
+|...++....++..++.|-+.+..++..+...+.....+-.+|..+|+.|+..+...
T Consensus 354 ~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek 411 (775)
T PF10174_consen 354 EKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREK 411 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555566666666666677677777777777777776666555433
No 373
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=42.25 E-value=1.2e+02 Score=36.58 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
.+..++++|+..+..|+.||..|..+|..|..
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34567788888888888899988888887765
No 374
>PF14645 Chibby: Chibby family
Probab=42.02 E-value=90 Score=28.16 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVD 319 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q~~~~l~~E 319 (466)
.+.++|+.||.-|+-++..|-.-+....+|
T Consensus 78 ~~n~~L~EENN~Lklk~elLlDMLtettae 107 (116)
T PF14645_consen 78 KENQQLEEENNLLKLKIELLLDMLTETTAE 107 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554433333333
No 375
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=41.83 E-value=3.4e+02 Score=26.47 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKR 305 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~q 305 (466)
-++|..++.++-+.|.+.|..=...+.+.|.++..-+.|-..+..+
T Consensus 82 Le~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~ 127 (204)
T PRK09174 82 IETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQA 127 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888999998888888888888888888887777554
No 376
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=41.82 E-value=2.6e+02 Score=29.52 Aligned_cols=56 Identities=16% Similarity=0.328 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 276 RSRRRKQAHLTELET---QVSQLRVE----NSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 276 RSR~RKq~~LeELE~---qV~~Le~E----Ns~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
.+..+...|++|.|. +...|+.. -..|.+.+.....++..|.+||..|..+++.=.
T Consensus 21 q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EK 83 (305)
T PF14915_consen 21 QNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEK 83 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhH
Confidence 456777788888763 34444432 234666667778888899999999988885433
No 377
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=41.57 E-value=3.4e+02 Score=33.72 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=12.9
Q ss_pred ccCCchhhHHHHHHHHhcCC
Q 012287 61 MNRSESEWAFQRFLQEAQQP 80 (466)
Q Consensus 61 M~Rs~SEWaFqrFLeE~~~~ 80 (466)
-.|.=-=|..==|+=|+..-
T Consensus 258 yG~ecDwWSlGV~~YEMlyG 277 (1317)
T KOG0612|consen 258 YGRECDWWSLGVFMYEMLYG 277 (1317)
T ss_pred cCCccchhhhHHHHHHHHcC
Confidence 33444448888888887654
No 378
>PLN03188 kinesin-12 family protein; Provisional
Probab=41.21 E-value=2.2e+02 Score=35.38 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQL-----------RVENSSLLKRLTDI------------------------SQKYNEAAVDNRVLKAD 326 (466)
Q Consensus 282 q~~LeELE~qV~~L-----------e~ENs~L~~ql~~L------------------------~q~~~~l~~EN~~LKaq 326 (466)
.+.+.-|-.++..| +.||..|+.||.+. ++++..++.||..|+.+
T Consensus 1154 ~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~ 1233 (1320)
T PLN03188 1154 SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQ 1233 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554 44599988888553 44566678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcc
Q 012287 327 VETLRAKVKMAEETVKRITGLNPL 350 (466)
Q Consensus 327 ve~Lr~kl~maE~~v~Rl~~ln~~ 350 (466)
|+.|.+|-.|-=..++.+.....+
T Consensus 1234 ~~klkrkh~~e~~t~~q~~aes~l 1257 (1320)
T PLN03188 1234 IDKLKRKHENEISTLNQLVAESRL 1257 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 999998876555555554344444
No 379
>PRK14160 heat shock protein GrpE; Provisional
Probab=41.19 E-value=1.5e+02 Score=29.54 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve 328 (466)
.+..|+.++..|+.++..|..++..+..++..+.++-.-.|.++.
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666777777766666655554444444433
No 380
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=41.12 E-value=3.8e+02 Score=34.85 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSS 301 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~ 301 (466)
++++|.....++.|...
T Consensus 945 ~~~~E~~~~k~~~Ek~~ 961 (1930)
T KOG0161|consen 945 LEELELTLQKLELEKNA 961 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 381
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=40.89 E-value=3.9e+02 Score=30.62 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 299 NSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 299 Ns~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
...|.+++..|..++.....+|..|-.-+.....++...|
T Consensus 89 ~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE 128 (617)
T PF15070_consen 89 AEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELE 128 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666655555555333333333333333
No 382
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=40.88 E-value=2.7e+02 Score=33.45 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=28.3
Q ss_pred hHHHhhcccccccccccccc---CcCCCCCCcccccCCchhhHHHHHHHHhcCCCCCCC
Q 012287 30 VTKIWRKMDRVFSVGEISEQ---FWSNPPDASSKMNRSESEWAFQRFLQEAQQPTSSGD 85 (466)
Q Consensus 30 ~~~~~~~Me~VfSvdei~~~---fW~~p~~~~~~M~Rs~SEWaFqrFLeE~~~~~~s~~ 85 (466)
.+|++|+|.+-..-|.+.+. |-.-=.-.-.--++|..=-+|-+|++=-.++..+|+
T Consensus 205 ~vkmlfkLHs~vp~dtLeghRdRf~~qf~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pn 263 (980)
T KOG0980|consen 205 LVKMLFKLHSQVPPDTLEGHRDRFHTQFERLKQFYADCSNLQYFKRLIQIPTLPEDAPN 263 (980)
T ss_pred HHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHhcchhHHHHHHhcCCCCCCCCcc
Confidence 46888888886553333210 000000111223447777777777765555544443
No 383
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=40.75 E-value=4.3e+02 Score=32.78 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=7.4
Q ss_pred ChHHHHHHHHHHH
Q 012287 141 NLEDYQAVLKSKL 153 (466)
Q Consensus 141 dp~~Y~a~LK~kL 153 (466)
.+.+|...+...|
T Consensus 161 ~~~~Yr~~v~~~l 173 (1353)
T TIGR02680 161 TATDYRRAVDEEL 173 (1353)
T ss_pred cHHHHHHHHHHHh
Confidence 4466765555555
No 384
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=40.63 E-value=3.6e+02 Score=26.69 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
..-|+.|-..|..++..=..+...++.|+..+..++.+=+.+.
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~ 178 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKL 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458888888888887777777888888887777766554444
No 385
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.28 E-value=2.9e+02 Score=28.02 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 274 ARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 274 ARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
--|.|..||...++|...+..-+.+...|..++..+++.. +.-|..++++++...
T Consensus 151 vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v---e~f~~~~~~E~~~Fe 205 (240)
T cd07667 151 VLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV---ECFNADLKADMERWQ 205 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3345667777777777666444455556666666666555 666777777777663
No 386
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=40.15 E-value=1.2e+02 Score=32.35 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLT 307 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~ 307 (466)
|+.++..|+.++..|..++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~ 46 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQK 46 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 387
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=40.01 E-value=3.1e+02 Score=25.51 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 313 YNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 313 ~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
|.....+-..|+..+..|++++..++
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666666666655554
No 388
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=39.89 E-value=1.4e+02 Score=33.37 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTD 308 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~ 308 (466)
++.||.++..|+.+...|..++..
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~ 593 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVAD 593 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788888888888887777777643
No 389
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=39.81 E-value=2e+02 Score=29.67 Aligned_cols=65 Identities=17% Similarity=0.323 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLN 348 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln 348 (466)
+.-.+.+.|..|. .-...+..++..+++.+..+..+...|.++|+.-++.+..++...+.|....
T Consensus 156 r~~e~~~iE~~l~---~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vR 220 (267)
T PF10234_consen 156 RPLELNEIEKALK---EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVR 220 (267)
T ss_pred CCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445555555443 3445666777778888888888888888888877776666654444443333
No 390
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=39.67 E-value=3.6e+02 Score=28.26 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012287 322 VLKADVETLRAKVKMAE 338 (466)
Q Consensus 322 ~LKaqve~Lr~kl~maE 338 (466)
.||.+...||+.|+..+
T Consensus 168 RLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 168 RLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 391
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=39.54 E-value=46 Score=32.73 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 301 ~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
+|......|.++|..+..+|..|..++.+|+..+.
T Consensus 109 qlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 109 QLEKDYESLKRQLESLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred hhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 34444455555555566666666666666655443
No 392
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.12 E-value=5.5e+02 Score=30.10 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=52.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHH----------HHHHHHHHHHHHH
Q 012287 266 RMLSNRESARRSRRRKQAHLTELETQVS---QLRVENSSLLKRLTDISQ---KYNEA----------AVDNRVLKADVET 329 (466)
Q Consensus 266 RmLsNRESARRSR~RKq~~LeELE~qV~---~Le~ENs~L~~ql~~L~q---~~~~l----------~~EN~~LKaqve~ 329 (466)
..+.+++.+-++|.--.+...+++.++. +|+.-|.....+|.++.+ .+..+ ..-+..|+.+++.
T Consensus 207 q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~ 286 (716)
T KOG4593|consen 207 QKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEG 286 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3566777777777777777777777654 345555554444444332 12111 1233568899999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 012287 330 LRAKVKMAEETVKRITGL 347 (466)
Q Consensus 330 Lr~kl~maE~~v~Rl~~l 347 (466)
|+.++..++.+..++.++
T Consensus 287 Lqskl~~~~~l~~~~~~L 304 (716)
T KOG4593|consen 287 LQSKLGRLEKLQSTLLGL 304 (716)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 999999998887776443
No 393
>PRK10698 phage shock protein PspA; Provisional
Probab=38.79 E-value=4e+02 Score=26.30 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
.++..|+.+.......+..|+.++..|...=..+|.+-..|-++.+.|+.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555544
No 394
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=38.65 E-value=3.3e+02 Score=32.09 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 318 VDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 318 ~EN~~LKaqve~Lr~kl~maE~ 339 (466)
.+-..|-++|..||.+|..+|.
T Consensus 580 ~~~~~lvqqv~dLR~~L~~~Eq 601 (961)
T KOG4673|consen 580 ERESMLVQQVEDLRQTLSKKEQ 601 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666655544
No 395
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=38.61 E-value=1.6e+02 Score=28.99 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=5.3
Q ss_pred HHHHHHHHHHh
Q 012287 335 KMAEETVKRIT 345 (466)
Q Consensus 335 ~maE~~v~Rl~ 345 (466)
.|..++++.+.
T Consensus 173 rmf~ei~d~~~ 183 (201)
T KOG4603|consen 173 RMFREIIDKLL 183 (201)
T ss_pred HHHHHHHHHHH
Confidence 44455555443
No 396
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=38.41 E-value=2e+02 Score=34.32 Aligned_cols=52 Identities=13% Similarity=0.287 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
+.+|..|..+...|+.|.+.|...++.++.+......|=..+++++..|.+.
T Consensus 105 ~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~e 156 (1265)
T KOG0976|consen 105 ESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDE 156 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445555555555555555555555555555544444444444444444333
No 397
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=38.38 E-value=10 Score=36.72 Aligned_cols=32 Identities=9% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccccC
Q 012287 322 VLKADVETLRAKVKMAEETVKRITGLNPLLQG 353 (466)
Q Consensus 322 ~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~~ 353 (466)
+.+.++.+.++++.+..+.+..+...||.++.
T Consensus 22 eq~~ql~eqkREl~lLk~yirAlR~sNP~~rn 53 (179)
T PF08941_consen 22 EQQQQLSEQKRELELLKEYIRALRSSNPVMRN 53 (179)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCC
Confidence 33334444444444444444444444444443
No 398
>PRK11281 hypothetical protein; Provisional
Probab=38.37 E-value=5.3e+02 Score=31.66 Aligned_cols=55 Identities=24% Similarity=0.240 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
+..+-..|..|..++....++.+.+..+|...|.+++.+++...-.++.+.-+.+
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~ 334 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKG 334 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445567999999999999999999999999999999999888877777766644
No 399
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=38.26 E-value=5.3e+02 Score=28.97 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVK 342 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~ 342 (466)
....|+.++.+|..+..........+.+....+..+..+++...++|++.-...+.+++
T Consensus 104 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~il~ 162 (779)
T PRK11091 104 LNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLLRSFLD 162 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555544443333333333334444444444444444433333333333
No 400
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=38.22 E-value=2.5e+02 Score=26.84 Aligned_cols=53 Identities=11% Similarity=0.295 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
.-.+..+++++.|.-|+--=+.|-....+|..++.+.+.....+..+|+.+..
T Consensus 81 ~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas 133 (152)
T PF11500_consen 81 KAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELAS 133 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777766677777777777666666555555555554443
No 401
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=38.04 E-value=1.8e+02 Score=30.37 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
-+|.+||.++..-+..+..|+.....|..-...|..+-.-...-|--|.++|+..++-|.||.-.
T Consensus 236 Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~ 300 (330)
T KOG2991|consen 236 GRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKG 300 (330)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777776666666666656666666777777777767777543
No 402
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=37.98 E-value=2.3e+02 Score=23.46 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
-+++++..+..++.+-..+..+...+-++.+.+..+=......+..+
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~ 73 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPV 73 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 35556666666666666666666555555554444433333333333
No 403
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=37.87 E-value=2.1e+02 Score=29.87 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.|+=.+|.+.+....|...|..|+..|+.+...+..+=+..|..++.||.-+
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~ 115 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPV 115 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5677788888888888888888888887665555555555555555555444
No 404
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=37.69 E-value=1.5e+02 Score=30.06 Aligned_cols=15 Identities=40% Similarity=0.335 Sum_probs=12.9
Q ss_pred HHHHHHHHhHHHHHH
Q 012287 146 QAVLKSKLNLACAAV 160 (466)
Q Consensus 146 ~a~LK~kLd~~cAAv 160 (466)
+.-|-.||+.|++.|
T Consensus 18 ~~~L~~kLE~DL~~~ 32 (248)
T PF08172_consen 18 QKELNAKLENDLAKV 32 (248)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467889999999988
No 405
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.56 E-value=2.7e+02 Score=25.11 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=19.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 266 RMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (466)
Q Consensus 266 RmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l 316 (466)
.+...++....+-+.=....-+++.++..++.+...+...+..+..+|..+
T Consensus 31 ~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k 81 (150)
T PF07200_consen 31 ELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEK 81 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444443333
No 406
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=37.55 E-value=3.6e+02 Score=27.95 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 012287 312 KYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLN 348 (466)
Q Consensus 312 ~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln 348 (466)
....+..+...||.+..-|+.+++.+..-+.++..-+
T Consensus 203 ~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~ 239 (264)
T PF07246_consen 203 LHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDI 239 (264)
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555666677777777777777766666665443
No 407
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=37.54 E-value=1.8e+02 Score=29.63 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 012287 316 AAVDNRVLKADVETL 330 (466)
Q Consensus 316 l~~EN~~LKaqve~L 330 (466)
+..||..||.++..|
T Consensus 71 l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 71 LEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 408
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=37.49 E-value=59 Score=28.05 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 302 L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
+...+..|...+..+..+|..|..+|..+|+
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566677788888888999999999998864
No 409
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=37.47 E-value=3e+02 Score=29.21 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTD 308 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~ 308 (466)
.++|+.+.++|+..+.....++++
T Consensus 6 W~eL~~efq~Lqethr~Y~qKlee 29 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEE 29 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 410
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=37.26 E-value=5.2e+02 Score=27.20 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=8.1
Q ss_pred HHHHHhHHHHHHHHHH
Q 012287 265 RRMLSNRESARRSRRR 280 (466)
Q Consensus 265 RRmLsNRESARRSR~R 280 (466)
|.-+.+..++-+++++
T Consensus 29 R~El~~~~~~~~ekRd 44 (294)
T COG1340 29 RDELRKEASELAEKRD 44 (294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555443
No 411
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=37.15 E-value=1.2e+02 Score=31.80 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 012287 322 VLKADVETLRA 332 (466)
Q Consensus 322 ~LKaqve~Lr~ 332 (466)
.++.++..|+.
T Consensus 33 ~~~~~~~~~~~ 43 (389)
T PRK03992 33 KLERELERLKS 43 (389)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 412
>PLN02678 seryl-tRNA synthetase
Probab=37.14 E-value=3.8e+02 Score=29.40 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 311 QKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 311 q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.+...+..+=..|..++..++.++
T Consensus 78 ~~~~~Lk~ei~~le~~~~~~~~~l 101 (448)
T PLN02678 78 AETKELKKEITEKEAEVQEAKAAL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 413
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=37.00 E-value=4.1e+02 Score=25.92 Aligned_cols=32 Identities=34% Similarity=0.500 Sum_probs=22.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 012287 273 SARRSRRRKQ-AHLTELETQVSQLRVENSSLLK 304 (466)
Q Consensus 273 SARRSR~RKq-~~LeELE~qV~~Le~ENs~L~~ 304 (466)
|||..+.+.. ..+.+|..++..|..||..|..
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665553 4677788888888888877654
No 414
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=37.00 E-value=2.8e+02 Score=23.97 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012287 295 LRVENSSLLKRLTDISQK 312 (466)
Q Consensus 295 Le~ENs~L~~ql~~L~q~ 312 (466)
|+..|.....+...+.+.
T Consensus 26 Le~mN~~~~~kY~~~~~~ 43 (99)
T PF10046_consen 26 LENMNKATSLKYKKMKDI 43 (99)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 415
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=36.85 E-value=1e+02 Score=29.77 Aligned_cols=51 Identities=20% Similarity=0.460 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
|.++..++..|+.++..|..++ .-|..++..|..+...+..-++.++++.|
T Consensus 113 L~e~snki~kLe~~~k~L~d~I-----------v~~~~i~e~IKd~de~L~~I~d~iK~Iig 163 (163)
T PF03233_consen 113 LEEISNKIRKLETEVKKLKDNI-----------VTEKLIEELIKDFDERLKEIRDKIKKIIG 163 (163)
T ss_pred HHHHHHHHHHHHHHHHhHhhhc-----------cccHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3334445555666665555443 45677888888888888888888877643
No 416
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=36.82 E-value=45 Score=30.42 Aligned_cols=41 Identities=32% Similarity=0.348 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLK 304 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ 304 (466)
|.-|---|.+=||----- +..|.||+.++..|+.||.-|+.
T Consensus 55 DLVKtHLmfAVREEVe~L----k~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 55 DLVKTHLMFAVREEVEVL----KEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444566555543322 35677777777777777766643
No 417
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=36.75 E-value=3.6e+02 Score=30.18 Aligned_cols=14 Identities=64% Similarity=0.629 Sum_probs=7.9
Q ss_pred CCCCCCCCCCCCCC
Q 012287 358 SSMSMSSFGGSHSD 371 (466)
Q Consensus 358 ~~~~mp~~~gs~s~ 371 (466)
+.++|+..+|+++.
T Consensus 452 ssm~~ss~sgs~~~ 465 (575)
T KOG4403|consen 452 SSMGMSSSSGSISN 465 (575)
T ss_pred cccccCCCCCCccc
Confidence 44566665555554
No 418
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=36.65 E-value=2.4e+02 Score=28.67 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 315 EAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 315 ~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
.|..++..=+.+++..+.++..++
T Consensus 142 ~L~~~g~vS~~~~~~a~~~~~~a~ 165 (346)
T PRK10476 142 PLLAKGYVSAQQVDQARTAQRDAE 165 (346)
T ss_pred HHHHCCCcCHHHHHHHHHHHHHHH
Confidence 344444444444544444444443
No 419
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.64 E-value=4.1e+02 Score=32.59 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 012287 275 RRSRRRKQAHLTEL 288 (466)
Q Consensus 275 RRSR~RKq~~LeEL 288 (466)
+.-+.+++..+..|
T Consensus 849 ~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 849 RKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 420
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=36.64 E-value=28 Score=38.47 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLT 307 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~ 307 (466)
.|++|++|+++|+++...|..++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccc
Confidence 455555555555555444444433
No 421
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=36.49 E-value=69 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
.....++..|+.||..|+.+|..++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788889999999998887654
No 422
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=36.47 E-value=1.1e+02 Score=32.27 Aligned_cols=7 Identities=43% Similarity=0.686 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 012287 322 VLKADVE 328 (466)
Q Consensus 322 ~LKaqve 328 (466)
.|+.++.
T Consensus 40 ~~~~~~~ 46 (389)
T PRK03992 40 RLKSELE 46 (389)
T ss_pred HHHHHHH
Confidence 3333333
No 423
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=36.44 E-value=2.3e+02 Score=22.94 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
+|.+|..+.+.|..++..|. .+-..|+.++.....
T Consensus 4 kid~Ls~dVq~L~~kvdqLs-------~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLS-------SDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 45555555555544444443 444444444444433
No 424
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=36.37 E-value=5.9e+02 Score=29.92 Aligned_cols=26 Identities=27% Similarity=0.320 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 276 RSRRRKQAHLTELETQVSQLRVENSS 301 (466)
Q Consensus 276 RSR~RKq~~LeELE~qV~~Le~ENs~ 301 (466)
++|.+-...+..|.....+|+.+...
T Consensus 507 ~ArEqgeaE~~~Lse~aqqLE~~Lq~ 532 (739)
T PF07111_consen 507 RAREQGEAERQQLSEVAQQLEQELQE 532 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544433
No 425
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=36.31 E-value=3.7e+02 Score=25.27 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHhccCccccCCCCCCCCCCCCCCCC
Q 012287 321 RVLKADVETLRAKV-----KMAEETVKRITGLNPLLQGSPEMSSMSMSSFGGS 368 (466)
Q Consensus 321 ~~LKaqve~Lr~kl-----~maE~~v~Rl~~ln~~l~~~~~~~~~~mp~~~gs 368 (466)
.+.++++..+.++| +|+.++...|. .|++|||...
T Consensus 86 ~e~~~EL~~fD~kV~~a~~~m~~~~~~~L~-------------~LgVPfF~~~ 125 (150)
T PF10454_consen 86 KEDEAELDKFDEKVYKASKQMSKEQQAELK-------------ELGVPFFYIK 125 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hcCCCeeeCC
Confidence 35566666665554 34444444443 3789987654
No 426
>PRK11281 hypothetical protein; Provisional
Probab=36.24 E-value=1.7e+02 Score=35.61 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=23.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 261 AKRVRRMLSNRESARRSRRRKQA-----------HLTELETQVSQLRVENSSLLKRL 306 (466)
Q Consensus 261 ~KR~RRmLsNRESARRSR~RKq~-----------~LeELE~qV~~Le~ENs~L~~ql 306 (466)
+|.+.|+-.||.--+.-|.+.+. ....|+.+...|+.+|.-++..+
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666776655555554432 23444455555555544444443
No 427
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=36.20 E-value=3.6e+02 Score=26.88 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 012287 287 ELETQVSQL 295 (466)
Q Consensus 287 ELE~qV~~L 295 (466)
+|+.+...|
T Consensus 120 el~kklnsl 128 (203)
T KOG3433|consen 120 ELTKKLNSL 128 (203)
T ss_pred HHHHHHHHH
Confidence 333333333
No 428
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.13 E-value=1.4e+02 Score=33.45 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 012287 317 AVDNRVLKADVETLRAKVKMAEETVKRITGLNPLL 351 (466)
Q Consensus 317 ~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l 351 (466)
..+-.+|++++.+|.+++.-=-++..||..+-..+
T Consensus 410 ~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~ 444 (508)
T KOG3091|consen 410 TPDEEELRAKLDTLLAQLNAPNQLKARLDELYEIL 444 (508)
T ss_pred CccHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 35567788888888877777777777777654433
No 429
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=36.08 E-value=4.3e+02 Score=25.94 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
.+.++.++..|+........+...+.+.+..|..++..|..++...+.+......
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555444444333
No 430
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=36.04 E-value=2.5e+02 Score=27.26 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLL 303 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~ 303 (466)
++.++.|+.+.......+..+.
T Consensus 45 ~~~~~~l~~~~~~~~~~~~~~~ 66 (177)
T PF03234_consen 45 KQEIEELKYERKINEKLLKRIQ 66 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544443333333
No 431
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=35.99 E-value=2.4e+02 Score=31.99 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
|.+|..|+..+..|+..|..-|....+....+..|-.+|..+.+++.+-+..+|+=++-+.
T Consensus 242 l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 242 LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444555555566666666666666666677777777777777666777776666554
No 432
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=35.96 E-value=2e+02 Score=28.01 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 275 RRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 275 RRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
+.-=++|++++.+-+.+...++.+..+|..++...+
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445667777766666666666666666555544
No 433
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.95 E-value=4e+02 Score=32.58 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 269 SNRESARRSRRRKQAHLTELETQVS-------QLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETV 341 (466)
Q Consensus 269 sNRESARRSR~RKq~~LeELE~qV~-------~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v 341 (466)
.-++.+.+--..|..++.+|+..+. ++-.++..+..++.++..+...+-.|-..|+..++.++.-|..++..+
T Consensus 418 ~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 418 KEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNL 497 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666655444 344444555555555555555555666667777777777777766655
Q ss_pred HHHh
Q 012287 342 KRIT 345 (466)
Q Consensus 342 ~Rl~ 345 (466)
.+.+
T Consensus 498 ~~~~ 501 (1200)
T KOG0964|consen 498 RATM 501 (1200)
T ss_pred HHhc
Confidence 5543
No 434
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=35.89 E-value=4.7e+02 Score=26.30 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~ 312 (466)
...+..+..++..|+.|...+..++..+.+.
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 164 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQE 164 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666665555443
No 435
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=35.83 E-value=5.1e+02 Score=26.68 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKY 313 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~ 313 (466)
.-++-|+.++..++.+......++...+.++
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555555555555555555555555443
No 436
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=35.63 E-value=75 Score=28.95 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLL 303 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~ 303 (466)
-|-.|..|+.++|+.++ ++.+++|+.++..|+.+.+.+.
T Consensus 94 ~E~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 94 YEYWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666655555433 3566777777777777665553
No 437
>PHA03161 hypothetical protein; Provisional
Probab=35.56 E-value=3.4e+02 Score=25.97 Aligned_cols=61 Identities=8% Similarity=0.126 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
.+..+++..|..|..+.....+++..|..--......=..|..++.+|+..+.-. ++++..
T Consensus 54 ~~~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~E---Le~l~~ 114 (150)
T PHA03161 54 KKQKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFE---IEALNH 114 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhc
Confidence 3445677777777777777777776665422222233344555555555444333 455543
No 438
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=35.53 E-value=5.8e+02 Score=27.25 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
++..|..+...+..++..++++|..+..-..++..++..+..
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISE 308 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333344444444445555555555544444444444444433
No 439
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=35.50 E-value=3.7e+02 Score=33.44 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=4.6
Q ss_pred hHHHHHHHHH
Q 012287 142 LEDYQAVLKS 151 (466)
Q Consensus 142 p~~Y~a~LK~ 151 (466)
|++|..++++
T Consensus 309 SeeakdLI~~ 318 (1317)
T KOG0612|consen 309 SEEAKDLIEA 318 (1317)
T ss_pred CHHHHHHHHH
Confidence 3455544443
No 440
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=35.44 E-value=82 Score=33.38 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012287 293 SQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 293 ~~Le~ENs~L~~ql~~L~ 310 (466)
..|+.||+.|++++..|+
T Consensus 60 ~~L~~EN~~Lk~Ena~L~ 77 (337)
T PRK14872 60 LVLETENFLLKERIALLE 77 (337)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 441
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=35.21 E-value=1.5e+02 Score=27.45 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve 328 (466)
-+|..--++.+=+ +-+......+..|+.||.-|+..+..+++-|..=...=..|+.++.
T Consensus 65 vEKTi~til~Lhe----------Kvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 65 VEKTIGTILNLHE----------KVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred hhhHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3555555665532 3455556678889999999999888888777554443344444433
No 442
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=35.21 E-value=2.3e+02 Score=27.98 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=12.9
Q ss_pred CChHHHHHHHHHHHhHHHHHHH
Q 012287 140 QNLEDYQAVLKSKLNLACAAVA 161 (466)
Q Consensus 140 ~dp~~Y~a~LK~kLd~~cAAvA 161 (466)
+..++|.+++-.=||+.+.+--
T Consensus 32 m~TEEFSa~IG~vLd~yL~yQK 53 (189)
T TIGR02132 32 IKREEFSALMGNVLDLNLFYQK 53 (189)
T ss_pred HchHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665443
No 443
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=35.17 E-value=1.6e+02 Score=34.54 Aligned_cols=55 Identities=25% Similarity=0.447 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLK---------------------RLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~---------------------ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
..+|.++..++..+..||..|.. ++..|..++..++-||..||-++..|...|..
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kelei 166 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEI 166 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888887765 34556677777888888888888777766643
No 444
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=35.14 E-value=6.5e+02 Score=28.11 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012287 323 LKADVETLRAKVKMAEETV 341 (466)
Q Consensus 323 LKaqve~Lr~kl~maE~~v 341 (466)
|..=+.-|+.++..-+.-|
T Consensus 138 l~~ll~Pl~e~l~~f~~~v 156 (475)
T PRK10361 138 LNSLLSPLREQLDGFRRQV 156 (475)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 3334445555555555443
No 445
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=35.13 E-value=1.2e+02 Score=30.09 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 012287 277 SRRRKQAHLTELETQVSQLRVE----NSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQ 352 (466)
Q Consensus 277 SR~RKq~~LeELE~qV~~Le~E----Ns~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~ 352 (466)
-|.||+.-.+....+|..|+.. -..|.+.-.+++.--...+.-|..|+.++..| .--|+....|.|+
T Consensus 112 KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L---------~~~Ri~f~~psFe 182 (211)
T cd07611 112 KRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSL---------WSRRVGFYVNTFK 182 (211)
T ss_pred HHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhhHHhhhhHH
Confidence 4577888888888888888753 23455555555555566677899999999988 2346666655555
Q ss_pred C
Q 012287 353 G 353 (466)
Q Consensus 353 ~ 353 (466)
+
T Consensus 183 a 183 (211)
T cd07611 183 N 183 (211)
T ss_pred H
Confidence 4
No 446
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=35.00 E-value=3.1e+02 Score=29.52 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
+.+..++..|+.|--..+.+-.........+..+|.+--..++.|..++++.|.+...|.-.
T Consensus 253 ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~e 314 (391)
T KOG1850|consen 253 EKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTE 314 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334445555555555555555555566677888888899999999999999988777544
No 447
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=34.95 E-value=3.7e+02 Score=26.67 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
.-+|+.+..-+..-..|...+...+++-......-...+.++..|+.+...+..
T Consensus 115 a~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqa 168 (192)
T PF11180_consen 115 AQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQA 168 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555445555555555555555544444433
No 448
>PRK01156 chromosome segregation protein; Provisional
Probab=34.92 E-value=6.8e+02 Score=29.06 Aligned_cols=14 Identities=7% Similarity=0.299 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 012287 322 VLKADVETLRAKVK 335 (466)
Q Consensus 322 ~LKaqve~Lr~kl~ 335 (466)
.+..++..|+.++.
T Consensus 253 ~~e~~i~ele~~l~ 266 (895)
T PRK01156 253 RYESEIKTAESDLS 266 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 449
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=34.66 E-value=59 Score=34.75 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLK----ADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LK----aqve~Lr~kl~maE~~v~Rl 344 (466)
+...|+.||..|++++.+|+.+...| ||..|| .+++....+...+-..+++.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~s~V~E~vet~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLRSHVCEDVETNDVIYDKIVKIMNKM 88 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55678888888888888888888777 666665 34444444444444444444
No 450
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=34.64 E-value=4.2e+02 Score=25.77 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 305 RLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 305 ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
++..++++...+..+|..|+.+...+....+..-.+++|-.-+
T Consensus 112 e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark~ 154 (170)
T PRK13923 112 QIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARRM 154 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444444444444444444444444443334444444433
No 451
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.64 E-value=1.4e+02 Score=27.38 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRL 306 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql 306 (466)
|..-+++|+.++..|+.+...|.++.
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe 93 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQE 93 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555444444444
No 452
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.63 E-value=2.6e+02 Score=27.57 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 321 RVLKADVETLRAKVKMAEETVK 342 (466)
Q Consensus 321 ~~LKaqve~Lr~kl~maE~~v~ 342 (466)
..++.+++.++.+++..++.|+
T Consensus 172 ~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 172 SRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4455666666655555544333
No 453
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=34.63 E-value=1.3e+02 Score=24.50 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTD 308 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~ 308 (466)
++||+.++..|+.|...+...+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888887777777665544
No 454
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=34.51 E-value=6.9e+02 Score=31.10 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 273 SARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (466)
Q Consensus 273 SARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~ 312 (466)
.|++....-++++++++..+...+.+...+..++..+..+
T Consensus 872 ~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~ 911 (1353)
T TIGR02680 872 HAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLR 911 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555554444444444444333
No 455
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=34.45 E-value=3.8e+02 Score=26.80 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=5.3
Q ss_pred hHHHHhhhhcC
Q 012287 443 SLEHLQKRIRG 453 (466)
Q Consensus 443 slehlqkri~~ 453 (466)
.|+-|..+|.+
T Consensus 212 ~La~lka~~~~ 222 (225)
T COG1842 212 RLAALKARMKG 222 (225)
T ss_pred HHHHHHHhhcc
Confidence 44455555443
No 456
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.37 E-value=2.6e+02 Score=31.85 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVL----KADVETLRAKV 334 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~L----Kaqve~Lr~kl 334 (466)
+.|++++...+..++..+..+..++..+..+|.....++.++ +.+++.|..++
T Consensus 445 q~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l 501 (581)
T KOG0995|consen 445 QEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEEL 501 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666677777777777766666665555444 34455554444
No 457
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=34.32 E-value=4.2e+02 Score=25.35 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTD 308 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~ 308 (466)
|...|+.++..++.+...|...+..
T Consensus 80 ~r~~l~~~~~~~e~~~a~l~~~l~~ 104 (158)
T PF09486_consen 80 YRDVLEERVRAAEAELAALRQALRA 104 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 458
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=34.25 E-value=3e+02 Score=23.64 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
.+..+..++..|+.....|..+.+...++|-.++..-..|..++..|+.++....+++..|.
T Consensus 18 ~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 18 QADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444455666666667777777777777888888888888888888888777777776664
No 459
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.19 E-value=3.2e+02 Score=30.36 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
|..+||.+.+.-+..-..|+.-+.-+..+...+...|..-..+|.+|
T Consensus 135 ~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El 181 (542)
T KOG0993|consen 135 YQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDEL 181 (542)
T ss_pred hhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444444444444334444333333333333333333333333333
No 460
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.18 E-value=4.4e+02 Score=25.44 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQ------KYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q------~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
+..++.|+.++..++.+...|..++..+.. +...+..+-..|+.++..|+.++.
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666655431 223334444444445544444443
No 461
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=34.17 E-value=2.6e+02 Score=31.50 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
.|...+..|+..|..++...+++...+..+...++.++..|+
T Consensus 434 SKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~Lq 475 (518)
T PF10212_consen 434 SKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQ 475 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444444444444444444443
No 462
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=34.14 E-value=4.2e+02 Score=29.46 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 300 SSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 300 s~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~R 343 (466)
+.+..++..+.+++..+..+-..++..+..|+..-..+...+++
T Consensus 379 sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~ 422 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLER 422 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544444433333
No 463
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=34.05 E-value=1.1e+02 Score=29.61 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~ 317 (466)
..++.+|+.+...|+.++..|..+...+++.|..|.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li 145 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALI 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888899999999999999988888888877664
No 464
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.00 E-value=3.1e+02 Score=25.15 Aligned_cols=57 Identities=12% Similarity=0.199 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 274 ARRSRRRKQAHLTELETQVSQLRVENSSLL-------KRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 274 ARRSR~RKq~~LeELE~qV~~Le~ENs~L~-------~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
+-.-|.++..++..++..+...+.+...|. .++..++.++..+..+=..++.++...
T Consensus 108 ~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 108 TLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555444443 244444444444444444444444443
No 465
>PRK15396 murein lipoprotein; Provisional
Probab=33.87 E-value=2.8e+02 Score=23.65 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~ 314 (466)
.++.|..+|+.|..+..+|...+..++....
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~ 56 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQ 56 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444444333
No 466
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=33.76 E-value=6.8e+02 Score=29.34 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
...-++.+..++..+..+-..|..++.....++..+...=..++.+++.++.+.+.+|+=..+|
T Consensus 550 ~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 550 LTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555555555555555555555555555555555555444444
No 467
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=33.56 E-value=3.3e+02 Score=27.12 Aligned_cols=14 Identities=14% Similarity=-0.066 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 012287 319 DNRVLKADVETLRA 332 (466)
Q Consensus 319 EN~~LKaqve~Lr~ 332 (466)
+-...+++++.+++
T Consensus 154 ~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 154 ALLSAKAALNAAIQ 167 (334)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444444
No 468
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=33.47 E-value=5.7e+02 Score=28.29 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQK 312 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~ 312 (466)
.+..+..+...|+.+...|..+-..|..+
T Consensus 138 ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq 166 (499)
T COG4372 138 ELARLTKQAQDLQTRLKTLAEQRRQLEAQ 166 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443333333333
No 469
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=33.47 E-value=2.1e+02 Score=36.77 Aligned_cols=57 Identities=16% Similarity=0.341 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 275 RRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 275 RRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
|..+.+.-..+.+|..+|..|+.+...|...+..+..++....+++..|+.++....
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK 1291 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWK 1291 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666665555555555555555555554444444444433
No 470
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=33.18 E-value=6.3e+02 Score=27.01 Aligned_cols=109 Identities=21% Similarity=0.298 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 258 PVDAKRVRRMLSNRESARRSRRRK------QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 258 ~~D~KR~RRmLsNRESARRSR~RK------q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
+.|.||+.-+|+ |=||-+-.|- +..-+.+|.++.+|+.+|.-+.++-..++++|.+-..==.--..=+.+-.
T Consensus 4 ~~dk~ri~~li~--~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq 81 (328)
T PF15369_consen 4 PEDKRRIANLIK--ELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQ 81 (328)
T ss_pred hhHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhccCccccCCCCCCCCCCCCCCCC
Q 012287 332 AKVKMAEETVKRITGLNPLLQGSPEMSSMSMSSFGGS 368 (466)
Q Consensus 332 ~kl~maE~~v~Rl~~ln~~l~~~~~~~~~~mp~~~gs 368 (466)
.||.+.-.........+..+..-......+-.-+.||
T Consensus 82 ~kl~~s~~~l~~~~~~~q~vsskKs~~qsss~eLDGS 118 (328)
T PF15369_consen 82 EKLTMSLSELSAARMKEQQVSSKKSPLQSSSSELDGS 118 (328)
T ss_pred HHHhcCHHHhhhhhhhhccCCcCCCCCCCCCCCCCcc
No 471
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=33.16 E-value=2.9e+02 Score=28.70 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDI 309 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L 309 (466)
.+.+|+.+++.++.+...+..++..+
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444443
No 472
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=33.13 E-value=7.1e+02 Score=27.60 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 270 NRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDI 309 (466)
Q Consensus 270 NRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L 309 (466)
|--+|+.--.|-.+.-.+|..++..|-.+...|..+...|
T Consensus 131 n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl 170 (499)
T COG4372 131 NLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSL 170 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555545555555555555555555444444444433
No 473
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=33.00 E-value=3.7e+02 Score=26.79 Aligned_cols=20 Identities=5% Similarity=0.062 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012287 314 NEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 314 ~~l~~EN~~LKaqve~Lr~k 333 (466)
.....+|..+..++..+.++
T Consensus 84 ~~a~~ea~~il~~a~~~a~~ 103 (212)
T COG3599 84 QAAEAEADDILKRASAQAQR 103 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666555544
No 474
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=32.94 E-value=4.2e+02 Score=29.34 Aligned_cols=21 Identities=10% Similarity=0.420 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 012287 327 VETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 327 ve~Lr~kl~maE~~v~Rl~~l 347 (466)
+..|..+..-++...+.|+..
T Consensus 248 l~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 248 LDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333333434444444444433
No 475
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.88 E-value=4.3e+02 Score=32.30 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 272 ESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 272 ESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
.+-.+.+...+..+++|+.+....-.+...|...+.+..-+...+..+|..|+.+..+|..+
T Consensus 407 ~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 407 NDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDK 468 (1200)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777777777777777666666667777777888888777776433
No 476
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=32.83 E-value=2e+02 Score=31.54 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=51.0
Q ss_pred ccCCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 012287 253 TENMDPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQ-----KYNEAAVDNRVLKADV 327 (466)
Q Consensus 253 ~~~~d~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q-----~~~~l~~EN~~LKaqv 327 (466)
.|.++.++.-|.|| |.|-+-.-.||+..++.|+...+.|..+..-....-++++- .|+..-+++..||.=+
T Consensus 73 RG~I~iK~~lReKR----r~a~k~~~~RK~~~i~~l~~~~~~ld~~d~~yeEikt~~~lki~K~~F~~fla~~~n~k~~l 148 (425)
T PF04599_consen 73 RGSINIKEPLREKR----RKALKNTIKRKREEIENLEDCIKNLDVDDEFYEEIKTDLELKIQKLSFQLFLANSNNLKTIL 148 (425)
T ss_pred cCccchhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 35677788888888 77888888999999999998888776654433333333332 3444455666666665
Q ss_pred HHHHHHH
Q 012287 328 ETLRAKV 334 (466)
Q Consensus 328 e~Lr~kl 334 (466)
+.+-..+
T Consensus 149 ~~~L~~~ 155 (425)
T PF04599_consen 149 ESSLSRL 155 (425)
T ss_pred HHHHHhc
Confidence 5553333
No 477
>COG5570 Uncharacterized small protein [Function unknown]
Probab=32.82 E-value=73 Score=25.73 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSS 301 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~ 301 (466)
.|+.+|+.+-..|+.|.+.
T Consensus 5 shl~eL~kkHg~le~ei~e 23 (57)
T COG5570 5 SHLAELEKKHGNLEREIQE 23 (57)
T ss_pred HHHHHHHHhhchHHHHHHH
Confidence 3566666666655555443
No 478
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=32.73 E-value=3.9e+02 Score=29.80 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=22.9
Q ss_pred cCCCCCCCCcccchhhhhHHHhhccccccccccc
Q 012287 13 THPQTSKPKNKTARITKVTKIWRKMDRVFSVGEI 46 (466)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~Me~VfSvdei 46 (466)
.||..+.|||....|..- -+||+.||+.-=
T Consensus 2 e~~~~~~~~~~~~~~~as----~~meSscss~ss 31 (552)
T KOG2129|consen 2 EHPKRPTPKNEALHIDAS----GRMESSCSSHSS 31 (552)
T ss_pred CCCCCCCCCccccccccc----ccccCCcccccC
Confidence 488888899888777653 479999987643
No 479
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=32.66 E-value=2.5e+02 Score=34.93 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 258 PVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 258 ~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
++..+-.|-+|+++--+...-..=-..+++|++++..+......+...|+++.........+=..|..+...|..-++..
T Consensus 1207 e~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL 1286 (1758)
T KOG0994|consen 1207 EEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKEL 1286 (1758)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhccCcc
Q 012287 338 EETVKRITGLNPL 350 (466)
Q Consensus 338 E~~v~Rl~~ln~~ 350 (466)
++-.+.|+..+.+
T Consensus 1287 ~e~~~~ik~sdi~ 1299 (1758)
T KOG0994|consen 1287 REQLEKIKESDIL 1299 (1758)
T ss_pred HHHHHHhhccCch
No 480
>PF14282 FlxA: FlxA-like protein
Probab=32.51 E-value=2.1e+02 Score=25.07 Aligned_cols=48 Identities=13% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 297 VENSSLLKRLTDISQKYNEAAV----DNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 297 ~ENs~L~~ql~~L~q~~~~l~~----EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
.....|..++..|++++..|.. ....-+.+++.|..++.+.+.-+.++
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.40 E-value=3.9e+02 Score=32.74 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
+..|..-+.+-+..-..|++|......+|...+..+...-..+...+..++..+..+..+=.++..++...+.++..+
T Consensus 400 ~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~da 477 (1141)
T KOG0018|consen 400 ELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDA 477 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
No 482
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=32.34 E-value=37 Score=29.54 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
.+...-+..|..+...|..++..|..+...|..+...++.....|+..+..++...+.+.
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~ 80 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIK 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHH
No 483
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=32.31 E-value=2.9e+02 Score=25.26 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 265 RRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLK 324 (466)
Q Consensus 265 RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LK 324 (466)
.|....|-..---|.==+++|..||-++..++.-+..|..++..|+.........+..|+
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 484
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.14 E-value=2.8e+02 Score=31.69 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 270 NRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKY--NEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 270 NRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~--~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
+++.-.+....-.+-++-|+.++..|+.+......++...++++ ..+..+-..+-.++.+|++++..++.....+
T Consensus 254 i~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l 330 (726)
T PRK09841 254 LQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEI 330 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.14 E-value=3.4e+02 Score=30.23 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 278 RRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 278 R~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
+.|+.+.+..+-.+++.|+.|| |..++..|......+...=..||...+.|....+...+.++.++
T Consensus 280 e~rrhrEil~k~eReasle~En--lqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 280 EERRHREILIKKEREASLEKEN--LQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
No 486
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=32.10 E-value=2.4e+02 Score=29.20 Aligned_cols=60 Identities=28% Similarity=0.508 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
|.||..+...+..|...|........++......+=.+|+.+++.+.+.....++-.+++
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=32.07 E-value=3e+02 Score=30.45 Aligned_cols=63 Identities=27% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
|..++-|-.+.++-.-||..|...+..-.+-+..-..||.+|.+.-++|.-++..- |.||.++
T Consensus 427 qRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaE---ItrLRtl 489 (593)
T KOG4807|consen 427 QRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAE---ITRLRTL 489 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH---HHHHHHH
No 488
>PTZ00464 SNF-7-like protein; Provisional
Probab=32.00 E-value=5.2e+02 Score=25.62 Aligned_cols=76 Identities=7% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 273 SARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDI--------SQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 273 SARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L--------~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
+.+-.-.+=..+++.|+.++..|..|....+..+... .++...+...-+.+..++..|..++--.+.++..+
T Consensus 15 t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~i 94 (211)
T PTZ00464 15 TLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTT 94 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hccC
Q 012287 345 TGLN 348 (466)
Q Consensus 345 ~~ln 348 (466)
.+.+
T Consensus 95 e~a~ 98 (211)
T PTZ00464 95 ESVK 98 (211)
T ss_pred HHHH
No 489
>PHA03011 hypothetical protein; Provisional
Probab=31.92 E-value=3.4e+02 Score=24.74 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
+..+++|-.|...|-.|-..+..+...+..-.+.-..+=.-|++++..|..++.
T Consensus 63 ~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 63 IEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
No 490
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=31.84 E-value=2.8e+02 Score=22.50 Aligned_cols=56 Identities=9% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
+..++.+-..+..++..+.+....++..+..+..++..++.++..-++..+-+-+.
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~ 56 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRT 56 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=31.78 E-value=1.8e+02 Score=31.73 Aligned_cols=62 Identities=11% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQ--KYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q--~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
+++-++.++.+|+.+...+...+..+.- .-..+..+=..|..++..|.+++...+.+++++.
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~ 227 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLE 227 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 492
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=31.73 E-value=5e+02 Score=26.98 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETV 341 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v 341 (466)
|..|++|.+....-..+.-.-..|.+||.++..++.|+-....+|..+.++... ..+..+..+|+......--+.
T Consensus 144 R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lK-----Ea~~~~f~Al~E~aEK~~Ila 218 (271)
T PF13805_consen 144 RDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLK-----EAYSLKFDALIERAEKQAILA 218 (271)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhccCccccCCCCCCCCCCCCCCC
Q 012287 342 KRITGLNPLLQGSPEMSSMSMSSFGG 367 (466)
Q Consensus 342 ~Rl~~ln~~l~~~~~~~~~~mp~~~g 367 (466)
...+-+-.+|.-.+-+.|..-|.+.|
T Consensus 219 ~~gk~Ll~lldd~pv~PG~~r~~Y~g 244 (271)
T PF13805_consen 219 EYGKRLLELLDDTPVVPGDTRPPYDG 244 (271)
T ss_dssp HHHHHHHTTS------TTS-------
T ss_pred HHHHHHHHhccCCCCCCCCCCCCCCC
No 493
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=31.49 E-value=4.6e+02 Score=25.49 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVK 342 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~ 342 (466)
......+.++..|+.+...+...+..|..++..|..+=..+|.+-..|-++++.+.....
T Consensus 92 ~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 92 IEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.39 E-value=8e+02 Score=28.71 Aligned_cols=85 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 012287 255 NMDPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK- 333 (466)
Q Consensus 255 ~~d~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k- 333 (466)
++++.-.+|.++++. .-..+=-..|++|+.+..+++.+...+.+...++++....+..+=..|+.+-..+.++
T Consensus 493 Glp~~ii~~A~~~~~------~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a 566 (771)
T TIGR01069 493 GIPHFIIEQAKTFYG------EFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLEL 566 (771)
T ss_pred CcCHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHh
Q 012287 334 VKMAEETVKRIT 345 (466)
Q Consensus 334 l~maE~~v~Rl~ 345 (466)
.+.++++++...
T Consensus 567 ~~ea~~~~~~a~ 578 (771)
T TIGR01069 567 EKEAQEALKALK 578 (771)
T ss_pred HHHHHHHHHHHH
No 495
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=31.22 E-value=3.5e+02 Score=30.04 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~R 343 (466)
.+|++-|...+.+....-..+......+.++...+..+=..|+-++..|.++.+.....++.
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 496
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=31.20 E-value=3.7e+02 Score=32.37 Aligned_cols=68 Identities=12% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 278 RRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 278 R~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
.+-++.+|..|..+...|+.|.+.|...++.++.+......|=..+++++..|.+.|-....-|-++.
T Consensus 101 lk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~ 168 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIG 168 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHH
No 497
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=31.06 E-value=2.1e+02 Score=25.99 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSS-LLKRLTDISQKYN-EAAVDNRVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~-L~~ql~~L~q~~~-~l~~EN~~LKaqve~Lr~kl~maE~~v~R 343 (466)
+++++||-.+.+.-+.+-.. +..++..+.+++. .-..+=.+|+.+|..|+++|.-.+.=.+|
T Consensus 45 k~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~kr 108 (108)
T COG3937 45 KRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLKR 108 (108)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhcC
No 498
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=30.99 E-value=1.1e+02 Score=27.65 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD 319 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~E 319 (466)
.++..|..+..+|+.||.-|+-++..|-..+....+|
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLtettae 108 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAETTAE 108 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 499
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=30.95 E-value=3.3e+02 Score=30.65 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 270 NRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAV-------DNRVLKADVETLRAKVKMAEETVK 342 (466)
Q Consensus 270 NRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~-------EN~~LKaqve~Lr~kl~maE~~v~ 342 (466)
++...++.+.++.+....++.+++.|+.+...|..++..++.+...-.. +=..|..+++++..++..+.+-+.
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~ 622 (638)
T PRK10636 543 ARKDQKRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWL 622 (638)
T ss_pred cchhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHh
Q 012287 343 RIT 345 (466)
Q Consensus 343 Rl~ 345 (466)
.+.
T Consensus 623 ~l~ 625 (638)
T PRK10636 623 EAQ 625 (638)
T ss_pred HHH
No 500
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=30.93 E-value=88 Score=34.08 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 276 RSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE-------------AAVDNRVLKADVETLRAKVKMAEET 340 (466)
Q Consensus 276 RSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~-------------l~~EN~~LKaqve~Lr~kl~maE~~ 340 (466)
|+=+++.+.+.|++.+-+.|+..|..|..++++|+.+... +...++.++.+...|....+..+.+
T Consensus 283 r~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~~~~~~~~~~~e~~i~~e~~~l~~~~~s~~~~ 360 (411)
T KOG1318|consen 283 RELQQTLQRARELENRQKKLESTNQELALRIEELKSEAGRHGLQVEPSKLTNSLEGSEQIIKEESDSLENEQQSQETL 360 (411)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhcchhhhccccccccc
Done!