Query 012287
Match_columns 466
No_of_seqs 246 out of 762
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:27:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 1.8E-14 6.2E-19 111.0 6.3 52 262-313 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.3 1.8E-11 6E-16 96.2 9.1 55 261-315 1-55 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 8.3E-11 2.9E-15 91.5 8.9 50 262-311 1-50 (61)
4 2dgc_A Protein (GCN4); basic d 99.1 9E-11 3.1E-15 92.6 6.7 46 268-313 15-60 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.1 2.6E-10 8.9E-15 89.1 7.5 50 262-311 1-50 (62)
6 1gd2_E Transcription factor PA 98.8 7.7E-09 2.6E-13 83.5 8.3 57 264-334 10-66 (70)
7 1ci6_A Transcription factor AT 98.8 9.4E-09 3.2E-13 80.9 8.2 50 262-311 2-51 (63)
8 1gu4_A CAAT/enhancer binding p 98.4 1.1E-06 3.7E-11 72.3 9.4 57 256-312 9-65 (78)
9 1hjb_A Ccaat/enhancer binding 98.4 1.4E-06 4.7E-11 73.0 9.8 55 256-310 9-63 (87)
10 3a5t_A Transcription factor MA 98.4 9.8E-09 3.4E-13 88.9 -4.0 63 258-334 33-95 (107)
11 2wt7_B Transcription factor MA 98.1 1.7E-05 5.8E-10 66.9 9.9 52 259-310 24-75 (90)
12 2oqq_A Transcription factor HY 97.0 0.0015 5E-08 48.1 6.1 39 282-327 2-40 (42)
13 1skn_P DNA-binding domain of S 95.6 0.0053 1.8E-07 51.9 2.6 32 259-290 59-90 (92)
14 3hnw_A Uncharacterized protein 94.9 0.18 6.2E-06 45.0 10.3 60 280-339 72-131 (138)
15 2jee_A YIIU; FTSZ, septum, coi 94.8 0.27 9.3E-06 40.7 10.3 42 284-325 7-48 (81)
16 2w6a_A ARF GTPase-activating p 93.5 0.28 9.5E-06 38.7 7.4 42 284-325 21-62 (63)
17 2jee_A YIIU; FTSZ, septum, coi 93.1 0.49 1.7E-05 39.2 8.7 51 284-334 21-71 (81)
18 1deb_A APC protein, adenomatou 93.1 0.3 1E-05 37.4 6.9 46 285-330 5-50 (54)
19 3a7p_A Autophagy protein 16; c 91.3 0.95 3.2E-05 41.4 9.1 82 261-344 67-148 (152)
20 3a7p_A Autophagy protein 16; c 91.0 3.8 0.00013 37.5 12.7 55 291-345 69-123 (152)
21 3u1c_A Tropomyosin alpha-1 cha 90.7 5.1 0.00017 33.7 12.5 12 326-337 87-98 (101)
22 3hnw_A Uncharacterized protein 90.5 2.2 7.5E-05 38.0 10.6 54 291-344 76-129 (138)
23 2dfs_A Myosin-5A; myosin-V, in 90.1 3.3 0.00011 47.5 14.3 59 280-338 988-1050(1080)
24 3s9g_A Protein hexim1; cyclin 89.8 1.7 5.9E-05 37.3 8.8 47 284-330 38-91 (104)
25 3oja_B Anopheles plasmodium-re 88.4 3.1 0.00011 42.9 11.5 51 284-334 510-560 (597)
26 3he5_A Synzip1; heterodimeric 88.3 1.7 5.9E-05 32.1 6.8 25 284-308 4-28 (49)
27 3u59_A Tropomyosin beta chain; 88.0 8.8 0.0003 32.0 12.0 23 288-310 28-50 (101)
28 2v66_B Nuclear distribution pr 87.8 11 0.00037 32.8 12.7 56 284-339 36-91 (111)
29 1ci6_A Transcription factor AT 86.5 2 6.8E-05 33.4 6.7 38 304-341 23-60 (63)
30 3oja_B Anopheles plasmodium-re 86.2 13 0.00044 38.3 14.6 62 286-347 505-566 (597)
31 1hjb_A Ccaat/enhancer binding 85.8 1.6 5.6E-05 36.3 6.3 39 307-345 39-77 (87)
32 3cve_A Homer protein homolog 1 84.8 4.6 0.00016 32.7 8.2 48 286-333 3-50 (72)
33 1wlq_A Geminin; coiled-coil; 2 84.7 6.8 0.00023 32.6 9.3 47 296-346 37-83 (83)
34 3vkg_A Dynein heavy chain, cyt 84.6 3.2 0.00011 52.8 10.6 59 289-347 2027-2085(3245)
35 2eqb_B RAB guanine nucleotide 84.4 5.9 0.0002 33.8 9.1 52 283-334 12-63 (97)
36 3m48_A General control protein 84.4 1.1 3.6E-05 31.6 3.7 26 285-310 2-27 (33)
37 1t2k_D Cyclic-AMP-dependent tr 84.2 3 0.0001 31.9 6.7 35 305-339 23-57 (61)
38 2v71_A Nuclear distribution pr 84.2 25 0.00086 33.0 14.2 54 284-337 89-142 (189)
39 3o0z_A RHO-associated protein 84.2 13 0.00044 34.5 12.0 68 263-337 70-137 (168)
40 2wt7_A Proto-oncogene protein 84.2 3.4 0.00012 31.9 7.0 38 304-341 23-60 (63)
41 1gd2_E Transcription factor PA 83.8 2.3 7.8E-05 34.1 6.0 28 284-311 37-64 (70)
42 2kz5_A Transcription factor NF 83.7 0.1 3.6E-06 44.0 -1.9 25 259-283 63-87 (91)
43 3cvf_A Homer-3, homer protein 83.5 2.7 9.1E-05 34.6 6.4 49 285-333 8-56 (79)
44 3o0z_A RHO-associated protein 83.4 13 0.00044 34.5 11.7 47 285-331 36-82 (168)
45 1go4_E MAD1 (mitotic arrest de 83.4 6.3 0.00022 33.7 8.9 32 284-315 13-44 (100)
46 3vmx_A Voltage-gated hydrogen 83.0 3.5 0.00012 31.2 6.3 37 289-325 3-39 (48)
47 3swy_A Cyclic nucleotide-gated 82.9 4.8 0.00016 30.1 7.0 44 287-333 2-45 (46)
48 3mq7_A Bone marrow stromal ant 82.6 5.9 0.0002 34.9 8.6 32 321-352 74-105 (121)
49 1kd8_B GABH BLL, GCN4 acid bas 82.5 2.2 7.5E-05 30.4 4.8 28 284-311 2-29 (36)
50 2oxj_A Hybrid alpha/beta pepti 82.5 1.6 5.6E-05 30.7 4.1 27 284-310 2-28 (34)
51 2c9l_Y EB1, zebra, BZLF1 trans 82.2 6.6 0.00023 30.6 7.8 35 268-302 7-41 (63)
52 2v4h_A NF-kappa-B essential mo 82.0 19 0.00066 31.3 11.5 66 270-335 32-100 (110)
53 3swf_A CGMP-gated cation chann 81.7 4.8 0.00016 32.9 7.2 48 286-336 3-50 (74)
54 3m9b_A Proteasome-associated A 81.6 1.5 5.3E-05 42.9 5.1 44 306-349 56-99 (251)
55 3efg_A Protein SLYX homolog; x 81.2 3.7 0.00013 33.4 6.4 43 283-325 14-56 (78)
56 1p9i_A Cortexillin I/GCN4 hybr 80.9 2 6.7E-05 29.2 3.8 22 313-334 8-29 (31)
57 1ic2_A Tropomyosin alpha chain 80.7 9.6 0.00033 30.6 8.7 46 287-332 24-69 (81)
58 2dfs_A Myosin-5A; myosin-V, in 80.4 17 0.00057 41.8 13.7 13 65-77 699-711 (1080)
59 4emc_A Monopolin complex subun 80.4 12 0.00041 35.3 10.4 59 290-348 20-85 (190)
60 3a2a_A Voltage-gated hydrogen 79.8 4.5 0.00015 31.5 6.1 38 289-326 10-47 (58)
61 4h22_A Leucine-rich repeat fli 79.5 3.7 0.00013 35.4 6.2 81 257-340 5-87 (103)
62 3jsv_C NF-kappa-B essential mo 79.4 13 0.00045 31.6 9.3 71 267-337 7-80 (94)
63 1wle_A Seryl-tRNA synthetase; 79.3 16 0.00056 38.5 12.3 42 316-363 121-162 (501)
64 1i84_S Smooth muscle myosin he 78.0 12 0.00043 42.8 11.8 21 314-334 916-936 (1184)
65 1kd8_A GABH AIV, GCN4 acid bas 77.9 2.7 9.3E-05 30.0 4.0 28 284-311 2-29 (36)
66 3m0d_C TNF receptor-associated 77.9 18 0.00061 28.1 9.2 59 281-339 4-62 (65)
67 4etp_A Kinesin-like protein KA 77.6 7.1 0.00024 39.9 8.7 48 283-330 10-57 (403)
68 3c3f_A Alpha/beta peptide with 77.3 3.1 0.0001 29.4 4.1 27 284-310 2-28 (34)
69 2dgc_A Protein (GCN4); basic d 77.0 3 0.0001 32.5 4.5 31 304-334 30-60 (63)
70 2zxx_A Geminin; coiled-coil, c 76.8 10 0.00034 31.3 7.7 36 297-332 34-69 (79)
71 2oqq_A Transcription factor HY 76.8 8.1 0.00028 28.5 6.3 19 285-303 19-37 (42)
72 2oa5_A Hypothetical protein BQ 76.2 7.9 0.00027 33.7 7.3 26 283-308 8-33 (110)
73 2yy0_A C-MYC-binding protein; 76.0 4.2 0.00015 30.9 5.0 31 290-327 19-49 (53)
74 1gu4_A CAAT/enhancer binding p 75.9 4 0.00014 33.3 5.1 27 308-334 40-66 (78)
75 3bas_A Myosin heavy chain, str 75.8 31 0.0011 28.2 12.8 52 283-334 35-86 (89)
76 3c3g_A Alpha/beta peptide with 75.8 3.6 0.00012 28.9 4.1 26 285-310 2-27 (33)
77 1jnm_A Proto-oncogene C-JUN; B 75.7 3.3 0.00011 31.8 4.4 33 304-336 22-54 (62)
78 3a7o_A Autophagy protein 16; c 74.8 11 0.00038 30.6 7.3 50 283-332 25-74 (75)
79 2xdj_A Uncharacterized protein 74.7 19 0.00065 29.6 8.9 44 285-328 22-65 (83)
80 2hy6_A General control protein 74.4 3.7 0.00013 29.0 3.9 27 284-310 2-28 (34)
81 1uo4_A General control protein 74.1 3.9 0.00013 28.9 3.9 27 284-310 2-28 (34)
82 4h22_A Leucine-rich repeat fli 74.0 31 0.0011 29.7 10.3 42 290-331 23-64 (103)
83 3qh9_A Liprin-beta-2; coiled-c 74.0 26 0.0009 29.0 9.5 52 295-346 24-75 (81)
84 2bni_A General control protein 73.4 4.1 0.00014 28.8 3.9 27 284-310 2-28 (34)
85 3m91_A Proteasome-associated A 72.9 15 0.0005 27.9 7.2 23 286-308 12-34 (51)
86 1x8y_A Lamin A/C; structural p 72.7 30 0.001 28.1 9.7 54 281-334 26-79 (86)
87 2fxo_A Myosin heavy chain, car 72.6 43 0.0015 28.9 11.2 59 287-345 38-103 (129)
88 1ses_A Seryl-tRNA synthetase; 72.4 74 0.0025 32.6 14.7 75 283-363 28-110 (421)
89 1go4_E MAD1 (mitotic arrest de 72.1 11 0.00039 32.1 7.2 26 283-308 19-44 (100)
90 2wq1_A General control protein 72.1 5 0.00017 28.1 4.1 26 285-310 2-27 (33)
91 2dq0_A Seryl-tRNA synthetase; 71.5 75 0.0026 32.9 14.7 73 285-363 33-115 (455)
92 3i00_A HIP-I, huntingtin-inter 71.4 14 0.00046 32.4 7.7 51 278-335 35-85 (120)
93 3mq9_A Bone marrow stromal ant 71.4 57 0.002 32.7 13.5 27 319-345 444-470 (471)
94 2ve7_C Kinetochore protein NUF 71.3 3.6 0.00012 39.7 4.5 31 260-290 118-148 (250)
95 3s9g_A Protein hexim1; cyclin 71.2 9.2 0.00032 32.9 6.4 51 302-352 35-85 (104)
96 3efg_A Protein SLYX homolog; x 71.0 11 0.00037 30.6 6.6 46 286-331 10-55 (78)
97 3oja_A Leucine-rich immune mol 70.6 42 0.0015 33.8 12.4 36 304-339 435-470 (487)
98 1fmh_A General control protein 70.5 7.2 0.00025 26.8 4.5 27 285-311 3-29 (33)
99 3m9b_A Proteasome-associated A 70.1 5.9 0.0002 38.8 5.6 41 283-330 54-94 (251)
100 3qne_A Seryl-tRNA synthetase, 70.0 37 0.0013 35.9 12.0 73 285-363 35-117 (485)
101 1ic2_A Tropomyosin alpha chain 69.9 35 0.0012 27.3 9.4 45 292-336 8-52 (81)
102 1gk6_A Vimentin; intermediate 69.7 17 0.00057 27.8 7.0 48 285-332 2-49 (59)
103 3u06_A Protein claret segregat 69.7 12 0.0004 38.6 8.1 9 317-325 30-38 (412)
104 2yy0_A C-MYC-binding protein; 69.0 8.5 0.00029 29.2 5.2 23 313-335 21-43 (53)
105 4emc_A Monopolin complex subun 68.2 19 0.00066 33.9 8.5 55 284-338 7-61 (190)
106 1dip_A Delta-sleep-inducing pe 67.9 5.2 0.00018 32.8 4.0 29 298-326 16-44 (78)
107 3ghg_A Fibrinogen alpha chain; 67.9 23 0.00079 38.1 9.9 42 301-342 114-155 (562)
108 2oxj_A Hybrid alpha/beta pepti 67.9 8 0.00027 27.3 4.4 29 305-333 2-30 (34)
109 1nlw_A MAD protein, MAX dimeri 67.8 9.6 0.00033 30.8 5.6 27 283-309 47-73 (80)
110 3bas_A Myosin heavy chain, str 67.7 44 0.0015 27.3 9.7 52 287-338 32-83 (89)
111 3m91_A Proteasome-associated A 67.7 22 0.00076 26.9 7.2 36 309-344 14-49 (51)
112 2w83_C C-JUN-amino-terminal ki 67.6 9.9 0.00034 31.2 5.6 49 286-334 5-60 (77)
113 2v66_B Nuclear distribution pr 67.2 37 0.0012 29.5 9.4 56 274-329 47-102 (111)
114 2i1j_A Moesin; FERM, coiled-co 66.6 4.3 0.00015 43.4 4.3 62 284-345 336-397 (575)
115 3mq7_A Bone marrow stromal ant 66.2 57 0.002 28.7 10.5 33 298-330 72-104 (121)
116 1dip_A Delta-sleep-inducing pe 66.2 3.4 0.00012 33.8 2.6 13 321-333 18-30 (78)
117 2lw1_A ABC transporter ATP-bin 65.9 40 0.0014 27.3 9.1 50 282-331 21-76 (89)
118 4b4t_K 26S protease regulatory 65.9 9.5 0.00032 39.3 6.5 56 292-347 37-92 (428)
119 3he5_A Synzip1; heterodimeric 65.7 31 0.0011 25.4 7.4 43 292-334 5-47 (49)
120 1dh3_A Transcription factor CR 64.9 6.3 0.00021 29.9 3.7 30 304-333 22-51 (55)
121 1am9_A Srebp-1A, protein (ster 64.7 9.4 0.00032 30.8 5.0 29 266-294 6-34 (82)
122 1a93_B MAX protein, coiled coi 64.5 9.2 0.00032 27.0 4.2 27 304-330 7-33 (34)
123 3u1c_A Tropomyosin alpha-1 cha 64.3 62 0.0021 27.0 14.2 60 284-343 31-90 (101)
124 2xdj_A Uncharacterized protein 64.1 52 0.0018 27.0 9.4 24 309-332 25-48 (83)
125 2xv5_A Lamin-A/C; structural p 63.6 42 0.0014 27.0 8.6 48 285-332 7-54 (74)
126 3na7_A HP0958; flagellar bioge 63.6 43 0.0015 31.7 10.2 77 262-339 32-111 (256)
127 3u59_A Tropomyosin beta chain; 62.9 64 0.0022 26.7 14.3 46 272-317 19-64 (101)
128 1t6f_A Geminin; coiled-coil, c 62.8 13 0.00046 26.5 4.8 29 296-324 6-34 (37)
129 2wvr_A Geminin; DNA replicatio 61.9 55 0.0019 31.3 10.3 47 297-347 115-161 (209)
130 3oja_A Leucine-rich immune mol 61.5 59 0.002 32.8 11.3 41 295-335 433-473 (487)
131 4etp_A Kinesin-like protein KA 61.4 24 0.00081 36.1 8.4 40 285-331 5-44 (403)
132 1uix_A RHO-associated kinase; 61.2 45 0.0015 27.0 8.2 31 288-318 2-32 (71)
133 3m48_A General control protein 61.1 8.7 0.0003 27.0 3.5 27 306-332 2-28 (33)
134 1joc_A EEA1, early endosomal a 61.0 47 0.0016 28.6 9.1 42 283-324 11-52 (125)
135 3u06_A Protein claret segregat 61.0 25 0.00085 36.1 8.5 47 284-330 11-57 (412)
136 3s4r_A Vimentin; alpha-helix, 60.4 72 0.0025 26.4 10.5 22 290-311 23-44 (93)
137 1nkp_A C-MYC, MYC proto-oncoge 60.1 17 0.00059 29.7 5.9 15 316-330 71-85 (88)
138 3tnu_A Keratin, type I cytoske 60.1 77 0.0026 27.3 10.3 41 290-330 84-124 (131)
139 2r2v_A GCN4 leucine zipper; co 59.9 12 0.00041 26.4 4.1 27 284-310 2-28 (34)
140 4ath_A MITF, microphthalmia-as 59.8 34 0.0012 28.3 7.5 42 282-334 38-79 (83)
141 2oto_A M protein; helical coil 59.8 80 0.0027 27.8 10.6 32 285-316 52-83 (155)
142 2wuj_A Septum site-determining 59.7 7.4 0.00025 29.6 3.3 22 311-332 34-55 (57)
143 3tnu_B Keratin, type II cytosk 59.7 84 0.0029 26.9 10.8 29 285-313 45-73 (129)
144 1wt6_A Myotonin-protein kinase 59.4 64 0.0022 26.7 9.0 56 270-335 14-69 (81)
145 1wle_A Seryl-tRNA synthetase; 59.3 56 0.0019 34.5 11.0 63 283-345 70-143 (501)
146 3q0x_A Centriole protein; cent 59.2 48 0.0016 31.9 9.6 53 260-318 161-213 (228)
147 3iv1_A Tumor susceptibility ge 58.4 76 0.0026 26.0 10.5 59 280-338 15-73 (78)
148 1wt6_A Myotonin-protein kinase 58.0 79 0.0027 26.1 10.3 24 286-309 41-64 (81)
149 2wt7_B Transcription factor MA 58.0 20 0.0007 30.0 6.0 53 275-334 29-85 (90)
150 3ol1_A Vimentin; structural ge 58.0 89 0.003 26.7 10.9 15 318-332 83-97 (119)
151 1s1c_X RHO-associated, coiled- 57.3 44 0.0015 27.0 7.6 31 287-317 3-33 (71)
152 3vkg_A Dynein heavy chain, cyt 57.1 40 0.0014 43.3 10.8 74 260-333 2010-2099(3245)
153 3na7_A HP0958; flagellar bioge 56.8 1.3E+02 0.0045 28.3 14.3 52 284-335 91-142 (256)
154 1kd8_B GABH BLL, GCN4 acid bas 56.0 22 0.00074 25.4 4.9 30 306-335 3-32 (36)
155 3mq9_A Bone marrow stromal ant 56.0 72 0.0025 32.0 10.8 36 302-337 434-469 (471)
156 3plt_A Sphingolipid long chain 55.9 42 0.0014 32.5 8.6 72 261-337 92-165 (234)
157 2wuj_A Septum site-determining 55.0 12 0.0004 28.5 3.7 30 283-312 27-56 (57)
158 3c3f_A Alpha/beta peptide with 54.7 19 0.00065 25.4 4.4 29 305-333 2-30 (34)
159 1jcd_A Major outer membrane li 54.3 66 0.0023 24.4 7.7 27 284-310 5-31 (52)
160 4gkw_A Spindle assembly abnorm 53.9 51 0.0017 29.9 8.2 27 326-352 99-125 (167)
161 2ocy_A RAB guanine nucleotide 53.6 46 0.0016 30.3 8.1 31 314-344 111-141 (154)
162 1kd8_A GABH AIV, GCN4 acid bas 53.5 19 0.00066 25.7 4.3 31 307-337 4-34 (36)
163 2w83_C C-JUN-amino-terminal ki 53.2 94 0.0032 25.5 10.3 41 301-341 34-74 (77)
164 1nkp_A C-MYC, MYC proto-oncoge 52.8 62 0.0021 26.4 8.1 14 282-295 22-35 (88)
165 1ik9_A DNA repair protein XRCC 52.8 94 0.0032 29.3 10.4 14 140-153 61-74 (213)
166 3c3g_A Alpha/beta peptide with 52.6 22 0.00074 25.0 4.4 27 306-332 2-28 (33)
167 3nmd_A CGMP dependent protein 52.4 47 0.0016 26.9 7.0 29 280-308 37-65 (72)
168 3htk_A Structural maintenance 52.4 59 0.002 24.1 7.3 24 284-307 13-36 (60)
169 1uii_A Geminin; human, DNA rep 52.3 30 0.001 28.8 6.0 32 297-328 46-77 (83)
170 1m1j_B Fibrinogen beta chain; 52.1 2.1E+02 0.0071 30.2 13.8 24 321-344 171-194 (464)
171 1gk7_A Vimentin; intermediate 51.8 19 0.00066 25.7 4.2 29 300-328 9-37 (39)
172 3lss_A Seryl-tRNA synthetase; 51.7 87 0.003 33.0 10.9 38 320-363 113-150 (484)
173 1am9_A Srebp-1A, protein (ster 51.1 62 0.0021 25.9 7.6 26 282-307 49-74 (82)
174 1zme_C Proline utilization tra 50.3 11 0.00036 28.3 2.9 24 283-306 44-67 (70)
175 2dq3_A Seryl-tRNA synthetase; 50.2 64 0.0022 33.0 9.5 74 284-363 31-114 (425)
176 3he4_A Synzip6; heterodimeric 50.1 6.5 0.00022 29.7 1.5 23 287-309 21-43 (56)
177 1nlw_A MAD protein, MAX dimeri 48.7 58 0.002 26.2 7.1 25 310-334 53-77 (80)
178 2j5u_A MREC protein; bacterial 48.2 8.5 0.00029 37.0 2.5 16 295-310 24-39 (255)
179 4ati_A MITF, microphthalmia-as 47.0 24 0.00083 30.3 4.9 23 313-335 93-115 (118)
180 3qne_A Seryl-tRNA synthetase, 46.9 80 0.0027 33.3 9.7 55 290-344 33-97 (485)
181 2efr_A General control protein 46.6 1.4E+02 0.0049 27.0 10.1 41 284-324 71-111 (155)
182 3bbp_D GRIP and coiled-coil do 46.3 18 0.00062 29.2 3.7 46 287-332 19-64 (71)
183 2w6b_A RHO guanine nucleotide 46.3 1E+02 0.0035 23.9 7.7 27 318-344 24-50 (56)
184 1deq_A Fibrinogen (alpha chain 44.9 75 0.0026 32.9 8.9 42 300-341 116-157 (390)
185 3m0a_A TNF receptor-associated 44.4 1E+02 0.0035 23.4 9.4 55 285-339 7-61 (66)
186 3ghg_A Fibrinogen alpha chain; 44.0 79 0.0027 34.1 9.1 48 281-328 108-155 (562)
187 3e98_A GAF domain of unknown f 43.9 30 0.001 33.2 5.5 52 284-339 66-117 (252)
188 1fmh_B General control protein 43.9 37 0.0013 23.3 4.4 27 308-334 5-31 (33)
189 1p9i_A Cortexillin I/GCN4 hybr 43.6 31 0.0011 23.4 3.9 25 286-310 2-26 (31)
190 1gk4_A Vimentin; intermediate 43.5 1.3E+02 0.0043 24.2 12.1 70 262-333 7-76 (84)
191 2efr_A General control protein 43.3 1.9E+02 0.0065 26.2 11.0 54 285-338 37-90 (155)
192 1nkp_B MAX protein, MYC proto- 42.7 40 0.0014 26.8 5.2 11 284-294 48-58 (83)
193 3brv_B NF-kappa-B essential mo 42.7 1.3E+02 0.0045 24.2 9.2 55 292-346 10-68 (70)
194 3ra3_A P1C; coiled coil domain 42.5 16 0.00056 24.3 2.3 19 316-334 5-23 (28)
195 4gkw_A Spindle assembly abnorm 42.4 2E+02 0.0067 26.1 10.6 15 326-340 68-82 (167)
196 2zvf_A Alanyl-tRNA synthetase; 42.4 22 0.00076 31.1 4.1 30 308-337 29-58 (171)
197 2lz1_A Nuclear factor erythroi 42.2 0.56 1.9E-05 39.5 -5.9 23 260-282 64-86 (90)
198 2b5u_A Colicin E3; high resolu 42.1 3.6E+02 0.012 29.1 14.0 61 285-345 316-376 (551)
199 2cly_A ATP synthase B chain, m 42.1 88 0.003 29.8 8.3 65 281-345 113-182 (214)
200 1fmh_A General control protein 42.1 32 0.0011 23.6 3.8 27 307-333 4-30 (33)
201 1ik9_A DNA repair protein XRCC 42.1 1.3E+02 0.0046 28.2 9.6 27 283-309 139-165 (213)
202 1lrz_A FEMA, factor essential 42.0 64 0.0022 32.3 7.9 60 283-343 247-306 (426)
203 2fxo_A Myosin heavy chain, car 41.8 1.7E+02 0.0057 25.1 14.6 60 284-343 63-122 (129)
204 2fic_A Bridging integrator 1; 41.6 94 0.0032 28.6 8.4 25 303-330 185-209 (251)
205 2hy6_A General control protein 41.6 40 0.0014 23.8 4.4 28 306-333 3-30 (34)
206 1x79_B RAB GTPase binding effe 41.1 1.8E+02 0.0061 25.2 9.9 12 341-352 93-104 (112)
207 1m1j_A Fibrinogen alpha subuni 40.7 1.5E+02 0.0052 31.5 10.5 59 282-343 99-157 (491)
208 3w03_C DNA repair protein XRCC 40.3 42 0.0014 31.4 5.7 29 283-311 152-180 (184)
209 3tnu_A Keratin, type I cytoske 40.1 1.8E+02 0.0061 25.0 11.7 30 285-314 47-76 (131)
210 3he5_B Synzip2; heterodimeric 40.1 1.1E+02 0.0039 22.7 7.5 32 301-332 7-38 (52)
211 2bni_A General control protein 39.9 35 0.0012 24.1 3.8 28 305-332 2-29 (34)
212 3ra3_A P1C; coiled coil domain 39.8 44 0.0015 22.2 4.1 24 293-316 3-26 (28)
213 3ol1_A Vimentin; structural ge 39.6 1.8E+02 0.0061 24.8 9.6 17 285-301 22-38 (119)
214 2ve7_A Kinetochore protein HEC 39.6 59 0.002 32.1 7.0 43 289-334 184-226 (315)
215 2xnx_M M protein, M1-BC1; cell 39.2 2.2E+02 0.0076 25.8 11.8 68 285-352 35-114 (146)
216 3n7n_E Monopolin complex subun 39.1 6.3 0.00022 33.5 0.0 52 293-344 39-94 (95)
217 4ath_A MITF, microphthalmia-as 38.8 62 0.0021 26.8 5.9 33 282-314 48-80 (83)
218 2e7s_A RAB guanine nucleotide 38.6 90 0.0031 27.9 7.3 49 285-333 34-82 (135)
219 3q8t_A Beclin-1; autophagy, AT 38.6 1.7E+02 0.0058 24.3 12.7 25 294-318 29-53 (96)
220 3iox_A AGI/II, PA; alpha helix 38.5 1.1E+02 0.0039 32.5 9.3 56 285-340 36-95 (497)
221 3qh9_A Liprin-beta-2; coiled-c 38.2 1.7E+02 0.0058 24.2 8.9 34 282-315 25-58 (81)
222 3tnu_B Keratin, type II cytosk 37.9 1.9E+02 0.0065 24.7 11.7 47 285-331 77-123 (129)
223 2oto_A M protein; helical coil 37.7 2.1E+02 0.0072 25.1 10.8 47 288-334 34-80 (155)
224 3oa7_A Head morphogenesis prot 37.1 1.1E+02 0.0036 29.3 7.9 40 292-331 32-71 (206)
225 3trt_A Vimentin; cytoskeleton, 36.7 1.5E+02 0.005 23.0 10.4 14 319-332 57-70 (77)
226 4b4t_K 26S protease regulatory 36.6 48 0.0017 34.1 6.1 25 286-310 45-69 (428)
227 1uo4_A General control protein 36.5 40 0.0014 23.8 3.7 27 306-332 3-29 (34)
228 4dzn_A Coiled-coil peptide CC- 36.3 85 0.0029 21.5 5.2 23 287-309 6-28 (33)
229 3mov_A Lamin-B1; LMNB1, B-type 35.8 1.9E+02 0.0065 24.0 10.3 50 283-332 37-86 (95)
230 3s4r_A Vimentin; alpha-helix, 35.5 1.9E+02 0.0064 23.9 9.8 29 304-332 56-84 (93)
231 4dk0_A Putative MACA; alpha-ha 35.3 2.2E+02 0.0076 27.1 10.2 23 321-343 125-147 (369)
232 1hlo_A Protein (transcription 35.0 31 0.0011 27.3 3.4 9 282-290 28-36 (80)
233 2q6q_A Spindle POLE BODY compo 34.7 1.4E+02 0.0047 24.2 7.0 65 282-346 9-73 (74)
234 2w6b_A RHO guanine nucleotide 34.5 1.2E+02 0.004 23.6 6.3 38 286-334 13-50 (56)
235 3cve_A Homer protein homolog 1 34.2 1.8E+02 0.0062 23.4 8.4 28 284-311 8-35 (72)
236 3mov_A Lamin-B1; LMNB1, B-type 34.2 48 0.0017 27.6 4.6 21 291-311 13-33 (95)
237 3q0x_A Centriole protein; cent 33.9 1.5E+02 0.0053 28.4 8.7 46 300-345 174-219 (228)
238 3i00_A HIP-I, huntingtin-inter 33.8 2.3E+02 0.008 24.5 10.5 21 283-303 15-35 (120)
239 2er8_A Regulatory protein Leu3 33.5 22 0.00075 26.9 2.3 21 282-302 48-68 (72)
240 3nmd_A CGMP dependent protein 33.1 98 0.0034 25.0 6.0 25 305-329 41-65 (72)
241 1m1j_C Fibrinogen gamma chain; 32.9 1.6E+02 0.0056 30.3 9.3 28 318-345 105-132 (409)
242 2wq1_A General control protein 32.8 69 0.0023 22.5 4.4 26 307-332 3-28 (33)
243 2xv5_A Lamin-A/C; structural p 32.2 1.9E+02 0.0066 23.1 7.7 14 294-307 9-22 (74)
244 1hlo_A Protein (transcription 31.6 66 0.0022 25.4 4.9 18 315-332 61-78 (80)
245 3cl3_D NF-kappa-B essential mo 31.0 26 0.00088 31.3 2.5 19 318-336 55-73 (130)
246 3htk_A Structural maintenance 30.9 1.6E+02 0.0054 21.7 9.3 47 285-331 7-53 (60)
247 2j5u_A MREC protein; bacterial 30.8 16 0.00055 35.0 1.3 19 288-306 24-42 (255)
248 2b9c_A Striated-muscle alpha t 30.6 2.9E+02 0.0099 24.6 13.0 73 261-339 36-108 (147)
249 2p4v_A Transcription elongatio 29.6 2.1E+02 0.0071 25.4 8.3 24 285-308 11-35 (158)
250 3vem_A Helicase protein MOM1; 29.6 2.5E+02 0.0084 24.6 8.4 51 279-339 57-107 (115)
251 3tq2_A KE1; parallel three hel 29.4 1.3E+02 0.0045 21.0 5.3 30 301-330 5-34 (36)
252 1joc_A EEA1, early endosomal a 29.2 82 0.0028 27.1 5.4 28 291-318 12-39 (125)
253 3ra3_B P2F; coiled coil domain 28.8 45 0.0015 22.2 2.8 14 318-331 7-20 (28)
254 2no2_A HIP-I, huntingtin-inter 28.8 2.7E+02 0.0091 23.6 11.2 24 309-332 73-96 (107)
255 3uux_B Mitochondrial division 28.7 1.7E+02 0.0059 28.5 8.1 75 256-330 149-224 (242)
256 4dzo_A Mitotic spindle assembl 28.5 1.1E+02 0.0037 26.6 6.0 20 284-303 5-24 (123)
257 1ez3_A Syntaxin-1A; three heli 28.3 1.9E+02 0.0067 23.7 7.5 12 323-334 93-104 (127)
258 2v4h_A NF-kappa-B essential mo 28.0 3E+02 0.01 23.9 10.4 44 291-334 63-106 (110)
259 3thf_A Protein shroom; coiled- 27.7 3.9E+02 0.013 25.1 10.2 31 278-308 14-44 (190)
260 1lwu_C Fibrinogen gamma chain; 27.2 1.7E+02 0.0059 29.3 8.1 7 324-330 46-52 (323)
261 1zxa_A CGMP-dependent protein 27.1 88 0.003 24.9 4.8 32 279-310 21-52 (67)
262 3he4_A Synzip6; heterodimeric 26.8 87 0.003 23.6 4.4 28 312-339 25-52 (56)
263 3lay_A Zinc resistance-associa 26.7 1.7E+02 0.0057 26.9 7.3 22 312-333 114-135 (175)
264 2f1m_A Acriflavine resistance 26.6 3.7E+02 0.013 24.5 10.2 34 312-345 99-132 (277)
265 2aze_A Transcription factor DP 26.3 1.5E+02 0.005 27.1 6.7 18 278-295 21-38 (155)
266 1jcd_A Major outer membrane li 26.0 2.1E+02 0.0073 21.6 7.7 22 290-311 4-25 (52)
267 1fmh_B General control protein 26.0 1.5E+02 0.0051 20.4 5.0 29 285-313 3-31 (33)
268 1f5n_A Interferon-induced guan 25.9 4E+02 0.014 28.6 11.1 73 261-333 507-582 (592)
269 1grj_A GREA protein; transcrip 25.8 3E+02 0.01 24.2 8.7 24 285-308 11-35 (158)
270 3rrk_A V-type ATPase 116 kDa s 25.6 3.2E+02 0.011 26.3 9.6 46 283-328 226-272 (357)
271 2wvr_A Geminin; DNA replicatio 25.5 3.6E+02 0.012 25.7 9.4 25 308-332 119-143 (209)
272 1j1d_B Troponin T, TNT; THIN f 25.4 3.2E+02 0.011 23.3 10.0 43 293-335 45-87 (106)
273 2i1j_A Moesin; FERM, coiled-co 25.2 39 0.0013 36.0 3.2 11 260-270 311-321 (575)
274 3mtu_A Tropomyosin alpha-1 cha 24.6 1.6E+02 0.0054 23.4 5.9 42 284-325 17-58 (75)
275 2zvf_A Alanyl-tRNA synthetase; 24.0 1.6E+02 0.0055 25.5 6.5 29 287-315 29-57 (171)
276 1ytz_T Troponin T; muscle, THI 23.6 3E+02 0.01 23.4 7.9 58 277-334 22-86 (107)
277 2l5g_A GPS2 protein, G protein 23.5 83 0.0028 22.7 3.5 22 283-304 15-36 (38)
278 1a93_B MAX protein, coiled coi 23.0 1.3E+02 0.0045 21.2 4.4 21 319-339 8-28 (34)
279 3swk_A Vimentin; cytoskeleton, 22.6 3.1E+02 0.011 22.2 8.6 22 286-307 3-24 (86)
280 3w03_C DNA repair protein XRCC 22.4 1.7E+02 0.0059 27.3 6.5 32 283-314 145-176 (184)
281 2ocy_A RAB guanine nucleotide 22.2 4.4E+02 0.015 23.9 13.7 33 315-347 105-137 (154)
282 2xzr_A Immunoglobulin-binding 22.1 3.8E+02 0.013 23.0 12.2 11 265-275 34-44 (114)
283 3trt_A Vimentin; cytoskeleton, 21.9 2.8E+02 0.0094 21.4 9.3 35 285-319 37-71 (77)
284 1gk4_A Vimentin; intermediate 21.8 3.1E+02 0.011 21.9 8.7 13 316-328 38-50 (84)
285 3fpp_A Macrolide-specific effl 21.8 4.1E+02 0.014 25.0 9.3 31 313-343 116-146 (341)
286 1qvr_A CLPB protein; coiled co 21.5 6.9E+02 0.024 27.2 12.1 47 281-327 399-460 (854)
287 2r2v_A GCN4 leucine zipper; co 21.4 1.4E+02 0.0049 21.0 4.4 27 306-332 3-29 (34)
288 3csx_A Putative uncharacterize 21.2 3E+02 0.01 22.7 7.0 23 308-330 54-76 (81)
289 3a2a_A Voltage-gated hydrogen 21.0 1.5E+02 0.0052 23.0 4.9 30 315-344 15-44 (58)
290 2dq0_A Seryl-tRNA synthetase; 21.0 2.9E+02 0.0098 28.6 8.6 78 268-345 8-96 (455)
291 1qsd_A Protein (beta-tubulin b 20.9 3.8E+02 0.013 22.6 7.9 25 321-345 46-70 (106)
292 3lay_A Zinc resistance-associa 20.9 4.8E+02 0.016 23.8 9.4 12 322-333 117-128 (175)
293 3fpp_A Macrolide-specific effl 20.8 4.5E+02 0.015 24.7 9.4 38 307-344 117-154 (341)
294 4e61_A Protein BIM1; EB1-like 20.7 1.9E+02 0.0066 24.9 6.0 35 299-333 6-40 (106)
295 1ses_A Seryl-tRNA synthetase; 20.6 6.8E+02 0.023 25.4 11.7 75 269-345 9-91 (421)
296 4dk0_A Putative MACA; alpha-ha 20.5 2.9E+02 0.0098 26.3 8.0 39 306-344 117-155 (369)
297 1m1j_B Fibrinogen beta chain; 20.5 6.9E+02 0.024 26.2 11.3 59 280-338 132-195 (464)
298 2akf_A Coronin-1A; coiled coil 20.4 1.3E+02 0.0044 20.7 3.8 22 288-309 4-25 (32)
299 4b4t_M 26S protease regulatory 20.3 88 0.003 32.2 4.6 27 321-347 49-75 (434)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.51 E-value=1.8e-14 Score=111.00 Aligned_cols=52 Identities=38% Similarity=0.626 Sum_probs=48.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKY 313 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~ 313 (466)
||++||++||+||++||.||++|+++||.+|..|+.||..|..++..|++.|
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999998887654
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.26 E-value=1.8e-11 Score=96.21 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=49.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNE 315 (466)
Q Consensus 261 ~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~ 315 (466)
+||.+|+++||+||++||.||++++.+|+.+|..|+.+|..|..++..|+.++..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999988766654443
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.18 E-value=8.3e-11 Score=91.55 Aligned_cols=50 Identities=28% Similarity=0.399 Sum_probs=46.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
||.+|+++||++|++||.||++|+.+||.+|..|+.+|..|..++..|+.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999988877653
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.12 E-value=9e-11 Score=92.64 Aligned_cols=46 Identities=33% Similarity=0.437 Sum_probs=40.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 268 LSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKY 313 (466)
Q Consensus 268 LsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~ 313 (466)
..||+||+|||.||++|+.+||.+|..|+.+|..|..++..|.+++
T Consensus 15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3499999999999999999999999999999999888887776554
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.07 E-value=2.6e-10 Score=89.12 Aligned_cols=50 Identities=32% Similarity=0.478 Sum_probs=45.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
|+.+|..+||+||++||.||++++.+||.+|..|+.+|..|..++..|..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999988877653
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.85 E-value=7.7e-09 Score=83.46 Aligned_cols=57 Identities=37% Similarity=0.506 Sum_probs=46.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 264 VRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 264 ~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.||+..||.|+|..|.||++||.+||.+|..|+.++..|. .||..|+.++..|+.++
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~--------------~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTT--------------LENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999887754 55566666666655544
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.84 E-value=9.4e-09 Score=80.91 Aligned_cols=50 Identities=26% Similarity=0.466 Sum_probs=41.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
|+.+++..||.+|+|+|.||++++.+|+.++..|+.+|..|..++..|+.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999988877663
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.42 E-value=1.1e-06 Score=72.29 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=47.5
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 256 MDPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK 312 (466)
Q Consensus 256 ~d~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~ 312 (466)
+|..|.+-..|..+|.++|+|||.++++...+++.+|..|+.||..|..++..|..+
T Consensus 9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667899999999999999999999999999999999998888765543
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.40 E-value=1.4e-06 Score=73.01 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=46.4
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 256 MDPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 256 ~d~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
.|..|++-..|..+|.++|+|||.++++...+++.+|..|+.||..|..++..|.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667788999999999999999999999999999999998888776543
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.37 E-value=9.8e-09 Score=88.91 Aligned_cols=63 Identities=32% Similarity=0.432 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 258 PVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 258 ~~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
..+.|.+||.++||.+|++||.||.+.+++||.++..|+.+...|. .||..|+.++..|+.++
T Consensus 33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~--------------~En~~l~~E~~~lk~k~ 95 (107)
T 3a5t_A 33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLA--------------SENASMKLELDALRSKY 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTT--------------STTSHHHHTTTSSSSCC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999988887777665554 45555555555554443
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.10 E-value=1.7e-05 Score=66.90 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
...|..||.++||.+|+-||.||.....+||.++..|..+...|..++..+.
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999999998888777765555444
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.01 E-value=0.0015 Score=48.11 Aligned_cols=39 Identities=36% Similarity=0.514 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqv 327 (466)
|+|+.+||.++..|+..|..|..+++.|+ .||.-||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq-------~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQ-------NENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHh
Confidence 58999999999999999988888877665 8888888754
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.63 E-value=0.0053 Score=51.87 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQAHLTELET 290 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~~LeELE~ 290 (466)
...|..||..+||.+|++||+||...+++|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 46788999999999999999999999888763
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.87 E-value=0.18 Score=44.98 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
+.+...+.|+.++..+..|...|+.++..++.++..+..++..|+.++..|+.++...|.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567888888888889999999999888888888888888888888888888776664
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.77 E-value=0.27 Score=40.75 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKa 325 (466)
-++.||.||+++-.....|..++.+|+++...+..+|..++.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666666666666665555555555333
No 16
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=93.47 E-value=0.28 Score=38.70 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKa 325 (466)
-+..-|.+|++|-.-|..|..++..++.+.+.|..||..||.
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 345568899999999999999999999999999999999984
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.13 E-value=0.49 Score=39.23 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
-|.-|.-+|..|+.+|..|..+...++.....+..+|..|+.+......++
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888888888888889999999999988876554
No 18
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=93.11 E-value=0.3 Score=37.38 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
.+.|-.||+.|+.||..|++++.+-..++..|+.|-.-+|+=+..|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 4678899999999999999999999988888888877776655444
No 19
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=91.27 E-value=0.95 Score=41.40 Aligned_cols=82 Identities=15% Similarity=0.059 Sum_probs=52.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEET 340 (466)
Q Consensus 261 ~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~ 340 (466)
.+..+++.+-+.+.++.-......+.+-..-+..|+.|...|..++..++++...+..||..|-.+... ++-+.||.+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~--rk~qEAe~M 144 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK--KTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 334444444444444444444444555556678888888899999999999999999999888877754 455566665
Q ss_pred HHHH
Q 012287 341 VKRI 344 (466)
Q Consensus 341 v~Rl 344 (466)
-++.
T Consensus 145 N~an 148 (152)
T 3a7p_A 145 NSEI 148 (152)
T ss_dssp ----
T ss_pred HHhc
Confidence 5544
No 20
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=90.96 E-value=3.8 Score=37.50 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
.+..|+.|...|..++..+...+......+..|+.++.+|+-++.++|+-..+|.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444443
No 21
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.68 E-value=5.1 Score=33.69 Aligned_cols=12 Identities=17% Similarity=0.598 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 012287 326 DVETLRAKVKMA 337 (466)
Q Consensus 326 qve~Lr~kl~ma 337 (466)
++..|.+++++.
T Consensus 87 ev~~L~Rriqll 98 (101)
T 3u1c_A 87 EVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.49 E-value=2.2 Score=37.99 Aligned_cols=54 Identities=9% Similarity=0.252 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
++..|+.+...+..++..|..+...+..++..++.+++.|+.++...+.-+.+|
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444433333
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.14 E-value=3.3 Score=47.48 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLT----DISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~----~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
..++.+++|+.++..+..|...|..++. +|+++...|..||..|++++..|+..+...+
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 3345555678888899988888885544443
No 24
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=89.76 E-value=1.7 Score=37.31 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLK-------RLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~-------ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
..-+||.+++.|+.||..|+. ++.+|..+...|..||..|+.+-+..
T Consensus 38 EYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334688888888888888777 44555555555555555555554433
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.40 E-value=3.1 Score=42.90 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.+..++.+.+.++.++..+.+++...++++..+..|...|+.+++..++++
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 334444455555555555555555555555555555555555444444443
No 26
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=88.27 E-value=1.7 Score=32.11 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTD 308 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~ 308 (466)
.+..||.+|..|+.||..|+++.-.
T Consensus 4 lvaqlenevaslenenetlkkknlh 28 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLH 28 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhccc
Confidence 4678999999999999999876543
No 27
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.99 E-value=8.8 Score=32.00 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
++.++..++.++..+-..+..|+
T Consensus 28 ~e~~~k~~e~~~~~~E~ei~sL~ 50 (101)
T 3u59_A 28 AEADKKQAEDRCKQLEEEQQGLQ 50 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333333333333333333333
No 28
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.79 E-value=11 Score=32.76 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
.+..|+.++..|+.++..|...+..|.+....++...+..-.-++.++.++..|=+
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiE 91 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIE 91 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 47779999999999999999999999999999999999999999999888876633
No 29
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.47 E-value=2 Score=33.42 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 304 KRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETV 341 (466)
Q Consensus 304 ~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v 341 (466)
.+...+..+...|..+|..|+.++..|+..+.....++
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777778888888888888888776665544
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.19 E-value=13 Score=38.30 Aligned_cols=62 Identities=8% Similarity=0.100 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
+.|+..+..++.+.+.+..++...+++......+-..|+.++..|+++++...+.+.+++-.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 55556666666666666666666666666666666777788888888887777776666433
No 31
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=85.84 E-value=1.6 Score=36.33 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 307 TDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 307 ~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
..+.++...|..||..|+.+|+.|..++.....++..+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 445566677778888888888888777766665555443
No 32
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=84.83 E-value=4.6 Score=32.72 Aligned_cols=48 Identities=13% Similarity=0.348 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
.++..+++.++.+|..|..++..+++....-..+-..++.++..+-..
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999999988888777777777766655433
No 33
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=84.69 E-value=6.8 Score=32.61 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 296 RVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 296 e~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
-.||..|..++..+..+...+..+|..|+.=. .+++-.-++++||+|
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA----~~~q~la~~i~~L~~ 83 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAEVA----EHVQYMAEVIERLSN 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH----HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcC
Confidence 35788888888888888888888888876533 344444567888875
No 34
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.63 E-value=3.2 Score=52.79 Aligned_cols=59 Identities=10% Similarity=0.210 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 289 E~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
+.++..++.+...|..++..|+.+|..+..|-..|+.+++..+.|+..|+.++.-|.++
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~E 2085 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSE 2085 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34445556666777778888888999999999999999999999999999987777554
No 35
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.41 E-value=5.9 Score=33.79 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
..+..|+.++.....|...|..++..-+.....++.++..+..+++.|.+.|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666666666666666666665543
No 36
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=84.40 E-value=1.1 Score=31.55 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
+..||.+|..|-.+|+.|..++..|+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677788877777777776666554
No 37
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.25 E-value=3 Score=31.88 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 305 RLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 305 ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
.+..|+.++..+..+|..|+.++..|+.++.....
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777788888888888888777655443
No 38
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.23 E-value=25 Score=32.99 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
.+..|+.++..|+.++..|..++..|.+....+....+.+..-++.++.++..+
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a 142 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA 142 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 377888889999999999999999999999999888888888888888887655
No 39
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.22 E-value=13 Score=34.47 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=46.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 263 RVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 263 R~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
-...+.+-=+.=||.|.+-...+.||+.++..|+.|...++.++.. +..+|+.|..++..|+......
T Consensus 70 e~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k-------~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 70 DYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEK-------VEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555556667788888888888888888888877776665544 4577777777777776554333
No 40
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=84.21 E-value=3.4 Score=31.93 Aligned_cols=38 Identities=8% Similarity=0.141 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 304 KRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETV 341 (466)
Q Consensus 304 ~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v 341 (466)
..+..|+.+...|..+|..|+.++..|+..+.....++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888999999999999988877665544
No 41
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=83.75 E-value=2.3 Score=34.15 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
.+.+|+.....|..||..|..++..|..
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888889999888887776653
No 42
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=83.72 E-value=0.1 Score=44.01 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH
Q 012287 259 VDAKRVRRMLSNRESARRSRRRKQA 283 (466)
Q Consensus 259 ~D~KR~RRmLsNRESARRSR~RKq~ 283 (466)
...|..||..+||.+|++||+||..
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3568889999999999999999854
No 43
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=83.55 E-value=2.7 Score=34.64 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
.+++..+++.++.+|..|..++..+++....-..+-..++.++..+-..
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999888888777776776666655443
No 44
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.41 E-value=13 Score=34.47 Aligned_cols=47 Identities=28% Similarity=0.258 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
..||...++.++..+..|..++..|......|..+...|.+++..=|
T Consensus 36 ~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 36 HTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555544444444444333
No 45
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=83.40 E-value=6.3 Score=33.70 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNE 315 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~ 315 (466)
.+..|..+++.|+.||..|+.++..|.-+...
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888877776655433
No 46
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=83.04 E-value=3.5 Score=31.16 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (466)
Q Consensus 289 E~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKa 325 (466)
|.++..|+.-|..|..+++.|+..+..++.|+..|++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 6788999999999999999998888888877766654
No 47
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=82.88 E-value=4.8 Score=30.07 Aligned_cols=44 Identities=25% Similarity=0.389 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
+||.+|..|+.--..|.-+++.|--+|. .-...||+++..|+.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~---ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN---ATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Confidence 5777777777777777766666544443 3447888998888765
No 48
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=82.57 E-value=5.9 Score=34.93 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 012287 321 RVLKADVETLRAKVKMAEETVKRITGLNPLLQ 352 (466)
Q Consensus 321 ~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~ 352 (466)
.+|+.+|..|.++|+.+++-++||...+..+.
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 44445555555555555555555555554443
No 49
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=82.48 E-value=2.2 Score=30.45 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
++..||.+|+.|-.+|+.|..++..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4667888888887777777766665553
No 50
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=82.47 E-value=1.6 Score=30.74 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
++..||.+|..|-.+|+.|..++..|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 356677777777777766666555543
No 51
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=82.23 E-value=6.6 Score=30.57 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=21.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 268 LSNRESARRSRRRKQAHLTELETQVSQLRVENSSL 302 (466)
Q Consensus 268 LsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L 302 (466)
-+||.++|+||.|=+..++-...-...-..||..|
T Consensus 7 yknr~asrk~rakfkn~lqh~r~vaaaks~en~rl 41 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 46999999999887766655443333333344333
No 52
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=82.03 E-value=19 Score=31.28 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 270 NRESARRSRRRKQAHLTELETQVSQLRV---ENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 270 NRESARRSR~RKq~~LeELE~qV~~Le~---ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
|=.+|-..=..|+..+++|+.++.+++. ...-|..|+......|..-...=..|..+.+.|..++.
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHH
Confidence 4456666667799999999999988888 67778889988888887766555555556665555543
No 53
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=81.68 E-value=4.8 Score=32.86 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
++||.+|..|+.-...|.-+++.|--+|. .-...||++|..|+.+++.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcc
Confidence 46777888877777777777666654443 3447899999999888765
No 54
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=81.63 E-value=1.5 Score=42.87 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 012287 306 LTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLNP 349 (466)
Q Consensus 306 l~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~ 349 (466)
+..++.+...+..+|..|++.+..+++++....+-+++|..--.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL 99 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPS 99 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44556666666677777777777777777777777777765433
No 55
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=81.22 E-value=3.7 Score=33.38 Aligned_cols=43 Identities=30% Similarity=0.180 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKa 325 (466)
.+|.+||.++..++.-...|...+..-+++...+..+-+.|..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888877777777766666555444444333333333
No 56
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=80.89 E-value=2 Score=29.24 Aligned_cols=22 Identities=45% Similarity=0.521 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 313 YNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 313 ~~~l~~EN~~LKaqve~Lr~kl 334 (466)
+..++.||+.||+++++|-+|+
T Consensus 8 lasleaenkqlkakveellakv 29 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999987665
No 57
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.71 E-value=9.6 Score=30.59 Aligned_cols=46 Identities=9% Similarity=0.115 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
.++.++...+..+..+...+..|++++..+..+=..+..++.....
T Consensus 24 ~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 24 QAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 58
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.36 E-value=17 Score=41.81 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=9.0
Q ss_pred chhhHHHHHHHHh
Q 012287 65 ESEWAFQRFLQEA 77 (466)
Q Consensus 65 ~SEWaFqrFLeE~ 77 (466)
+.-|.|+.|++--
T Consensus 699 p~R~~~~eF~~RY 711 (1080)
T 2dfs_A 699 PSRWTYQEFFSRY 711 (1080)
T ss_dssp CEEEEHHHHHHHH
T ss_pred CchhhHHHHHHHH
Confidence 4567788888754
No 59
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=80.36 E-value=12 Score=35.32 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 012287 290 TQVSQLRVENSSLLKRLTDIS-------QKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLN 348 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~-------q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln 348 (466)
.-|+.|..||..|..++.... ++...+..+=+.+..++..-+.-+...+++.+-|+|+.
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl~ 85 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNVR 85 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCcE
Confidence 344555555555444444333 33333333333333333334444566677888888863
No 60
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=79.85 E-value=4.5 Score=31.47 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKAD 326 (466)
Q Consensus 289 E~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaq 326 (466)
|.++..|+.-|-+|..++..|+.++...+.|+..|++=
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888899999999988888887777777666543
No 61
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=79.49 E-value=3.7 Score=35.37 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 257 DPVDAKRVRRMLSNRESARRSRRRK--QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 257 d~~D~KR~RRmLsNRESARRSR~RK--q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.+.++|=+|-|++| |+-=-.|- .=.++-|..++..++.....|.+++.+..+.+..+......|+.++..|+.++
T Consensus 5 ~EvEEKyrKAMVsn---AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 5 AEVEEKYKKAMVSN---AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp ---CCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889887 22211111 11234455555556666666666666666666666666677777777777666
Q ss_pred HHHHHH
Q 012287 335 KMAEET 340 (466)
Q Consensus 335 ~maE~~ 340 (466)
...+++
T Consensus 82 ~qRD~L 87 (103)
T 4h22_A 82 KQREEM 87 (103)
T ss_dssp HTTTSC
T ss_pred HHHHHH
Confidence 655543
No 62
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=79.41 E-value=13 Score=31.56 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=54.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 267 MLSNRESARRSRRRKQAHLTELETQVSQLR---VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 267 mLsNRESARRSR~RKq~~LeELE~qV~~Le---~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
+..|-.+|-..=..|+..|++|...+.+++ ..+.-|..++......|..-...-..|..+.+.|..++...
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344566777777789999999999888888 67777999999999988887777667777777766555433
No 63
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=79.32 E-value=16 Score=38.55 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCCCCCCCC
Q 012287 316 AAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQGSPEMSSMSMS 363 (466)
Q Consensus 316 l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~~~~~~~~~~mp 363 (466)
+..+=+.|+.++.+|..++...++-+. .++..++++..-.+|
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~------~~l~~iPN~~~~~vP 162 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFY------LRALRLPNQTHPDVP 162 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTSCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhCCCCCCCCCC
Confidence 334444444444444444444443332 234344444445555
No 64
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=78.03 E-value=12 Score=42.82 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012287 314 NEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 314 ~~l~~EN~~LKaqve~Lr~kl 334 (466)
..+..+...|+.+++.|+.++
T Consensus 916 ~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433
No 65
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=77.89 E-value=2.7 Score=29.99 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
++..||.+|..|..+|+.|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3567888888887777777766665543
No 66
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=77.86 E-value=18 Score=28.13 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
|.+.+.+||.++..++.-...+...+..+.-....+..++..=+..++.|++|+...|.
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~ 62 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 45677888888888777666666666555555555555555556677777777655543
No 67
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=77.56 E-value=7.1 Score=39.90 Aligned_cols=48 Identities=10% Similarity=0.245 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
..+.+|+.++..|+.+...+..++.++.+++...+..-+.|-.++++|
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444444444444444444444444444444444433
No 68
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=77.35 E-value=3.1 Score=29.38 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
++..||.+|..|-.+|..|..++..|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 356677777777777766666655544
No 69
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=77.00 E-value=3 Score=32.49 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 304 KRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 304 ~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.++..|+.+...|..+|..|+.++..|+..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777778889999999999887765
No 70
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=76.81 E-value=10 Score=31.29 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 297 ~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
.||..|..++..++.+...+..+|..|+.=+...+.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~ 69 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQY 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999988766665544
No 71
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=76.78 E-value=8.1 Score=28.46 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLL 303 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~ 303 (466)
..|||.+|+.|+.||.-|+
T Consensus 19 naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 19 NSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3444444444444444444
No 72
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=76.24 E-value=7.9 Score=33.72 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTD 308 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~ 308 (466)
.-++||..++..|+.||..|++++..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999963
No 73
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=75.98 E-value=4.2 Score=30.85 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADV 327 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqv 327 (466)
..|..|+.||..|+.++.. |..++.+|++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~-------L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEA-------IVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3455555555555444433 334555555544
No 74
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=75.93 E-value=4 Score=33.32 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 308 DISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 308 ~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.+.+++..|..||..|+.+|+.|+..+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666555443
No 75
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=75.81 E-value=31 Score=28.18 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
....+|+.+...|..+...|..++.++...+..|......|..++..|..++
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788888888888888888888888888888888888888888776544
No 76
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=75.77 E-value=3.6 Score=28.86 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
+..||.+|+.|-.+|..|..++..|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45677777777777766666665554
No 77
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=75.71 E-value=3.3 Score=31.82 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 304 KRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 304 ~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
..+..|+.+...|..+|..|+.++..|+.++..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777888888888888888776543
No 78
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=74.77 E-value=11 Score=30.64 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
.++.+=+.++..|+....-=.+-...|..+...+..||..|..++..|.+
T Consensus 25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 34444555566666555444455566777888899999999999988754
No 79
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=74.75 E-value=19 Score=29.60 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve 328 (466)
+-+|..++..|+.|...|+-++..+..+...+....+.+-.++.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666555555555554444443
No 80
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=74.43 E-value=3.7 Score=28.95 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
++..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456778888887777777766665554
No 81
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=74.06 E-value=3.9 Score=28.90 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
++..||.+|+.|-.+|..|..++..|+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356778888888777777776666554
No 82
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=74.01 E-value=31 Score=29.69 Aligned_cols=42 Identities=10% Similarity=0.160 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
.+-+.|.-+...|+-.+.++.+.+..+..++++...+++.+.
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~K 64 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREK 64 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443
No 83
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=74.00 E-value=26 Score=29.00 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 295 LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 295 Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
|-.|...|+-+++++..+-..-+-.=+.-|+++..|++++...+.-++||..
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333334444444443333333333344457888888888888888888864
No 84
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=73.35 E-value=4.1 Score=28.76 Aligned_cols=27 Identities=11% Similarity=0.353 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
++..||.+|..|-.+|..|..++..|+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 456677777777777777766665554
No 85
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=72.95 E-value=15 Score=27.91 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTD 308 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~ 308 (466)
.+|..++..|...|..|...+..
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~ 34 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKE 34 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444433
No 86
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=72.71 E-value=30 Score=28.14 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
-...+.++...+..|+.+...++..+....++|+.|..=-..|-.+|.+.|.-+
T Consensus 26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345677788888888888888988888888999999998899999999987543
No 87
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=72.57 E-value=43 Score=28.90 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 287 ELETQVSQLRVENSSLLKR-------LTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~q-------l~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
+|+.+...|..+...|..+ +.+....+..+......|..++..|..++..-++...-|.
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~ 103 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELT 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433 3445555666666667777777777777666666555443
No 88
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=72.40 E-value=74 Score=32.57 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCC
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQK--------YNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQGS 354 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~--------~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~~~ 354 (466)
..+.+|..+...++.+...|+.+-..+.++ ...+..+=+.|+.++.+|..++...++-+.. ++..+
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i 101 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA------LLLQV 101 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhC
Confidence 445555555555555555555555555443 2334444455555555555555444443332 23344
Q ss_pred CCCCCCCCC
Q 012287 355 PEMSSMSMS 363 (466)
Q Consensus 355 ~~~~~~~mp 363 (466)
+++..-.+|
T Consensus 102 pN~~~~~vp 110 (421)
T 1ses_A 102 PLPPWPGAP 110 (421)
T ss_dssp CCCCCTTSC
T ss_pred CCCCCCCCC
Confidence 555555555
No 89
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=72.06 E-value=11 Score=32.12 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTD 308 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~ 308 (466)
..|++|+.+...|+.++..|..+|..
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888777755
No 90
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=72.06 E-value=5 Score=28.13 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
+..||.+|+.|-.+|..|..++..++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56778888888777777766665554
No 91
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=71.47 E-value=75 Score=32.93 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCC
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYN----------EAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQGS 354 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~----------~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~~~ 354 (466)
+.+|..+...|+.+...|+.+-..+.++.. .+..+=+.|+.++.+|..++...++-+.. ++..+
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i 106 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY------YLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhC
Confidence 334444444455555555544444444433 33444455555555555555554443333 34344
Q ss_pred CCCCCCCCC
Q 012287 355 PEMSSMSMS 363 (466)
Q Consensus 355 ~~~~~~~mp 363 (466)
+++..-.+|
T Consensus 107 pN~~~~~vP 115 (455)
T 2dq0_A 107 PNITHPSVP 115 (455)
T ss_dssp CCCCCTTSC
T ss_pred CCCCCccCC
Confidence 555555555
No 92
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.42 E-value=14 Score=32.38 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 278 RRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 278 R~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
+..-+.++.+|+.+|..|+.|... -+...+.+..||..|+.+++.|+.+..
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e-------~r~~~q~a~~e~e~Lr~e~~~l~~~~~ 85 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAE-------QQHLRQQAADDCEFLRAELDELRRQRE 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444556677777777776666544 444456677899999999998855443
No 93
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.40 E-value=57 Score=32.71 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 319 DNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 319 EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
.=.+|..+|.+|.++++.+++-|+|++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446677778888888888888888874
No 94
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=71.33 E-value=3.6 Score=39.69 Aligned_cols=31 Identities=26% Similarity=0.153 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELET 290 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~ 290 (466)
+.||.||+|+==.==.|-|+-|..-++++-.
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~ 148 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLW 148 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999977544444444444444433333
No 95
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=71.23 E-value=9.2 Score=32.88 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 012287 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQ 352 (466)
Q Consensus 302 L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~ 352 (466)
|-.+.-.|..++..+..||..|+..-....+++...++=|+||+-.|+.|.
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 444444555555666677777777666666666666666777777776654
No 96
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=71.03 E-value=11 Score=30.57 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
.+||.++..|+...+-+...+..|++....-..+-..|+.++..|.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777766666666666555544444455555555443
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.55 E-value=42 Score=33.82 Aligned_cols=36 Identities=17% Similarity=0.051 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 304 KRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 304 ~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
+.....+++...+..||..|+..++++..++..+.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 333444444445555555555555555555544443
No 98
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=70.49 E-value=7.2 Score=26.80 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
+..||.+|.+.+.||-+|..++..|..
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345666666666666666666555544
No 99
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=70.12 E-value=5.9 Score=38.82 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
..+.+|+.++..|...|..|...+..++ .|...||.+++.|
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar-------~El~~LkeElerL 94 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEAR-------QQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 3455666666666666666666555544 4555555555555
No 100
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=70.03 E-value=37 Score=35.90 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCC
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKY----------NEAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQGS 354 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~----------~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~~~ 354 (466)
+.+|..+...|+.+...|+.+...+.++. ..+..+=+.|+.++.+|+.++...++-+.. ++..+
T Consensus 35 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~------~l~~i 108 (485)
T 3qne_A 35 IIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS------KINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhC
Confidence 34444444444444444444444444433 234445555555555555555544443332 23344
Q ss_pred CCCCCCCCC
Q 012287 355 PEMSSMSMS 363 (466)
Q Consensus 355 ~~~~~~~mp 363 (466)
+++..-.+|
T Consensus 109 PN~~~~~vP 117 (485)
T 3qne_A 109 GNIVHESVV 117 (485)
T ss_dssp CCCCCTTSC
T ss_pred CCCCCccCC
Confidence 445555555
No 101
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.91 E-value=35 Score=27.26 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~m 336 (466)
+..|+.+......++..++.++......+..+-.++..|..+++.
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~ 52 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKG 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 102
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=69.73 E-value=17 Score=27.85 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
+.++..++..|+.+...++..+....++|+.|..=...|-.+|.+.|.
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 346677788888888888888888888999999888889999988864
No 103
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=69.70 E-value=12 Score=38.60 Aligned_cols=9 Identities=22% Similarity=0.161 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 012287 317 AVDNRVLKA 325 (466)
Q Consensus 317 ~~EN~~LKa 325 (466)
..++..|++
T Consensus 30 ~~~~~~~~~ 38 (412)
T 3u06_A 30 AAELETCKE 38 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 104
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=69.00 E-value=8.5 Score=29.19 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 313 YNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 313 ~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
+..|..||..||++++.|..++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544443
No 105
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=68.23 E-value=19 Score=33.93 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
|-.-++.++..-....+.|..++..|.++......|+..|+.+++.|+.+....+
T Consensus 7 YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 7 YKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3344556666666667778888888888888888888888888888877775444
No 106
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=67.92 E-value=5.2 Score=32.80 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 298 ENSSLLKRLTDISQKYNEAAVDNRVLKAD 326 (466)
Q Consensus 298 ENs~L~~ql~~L~q~~~~l~~EN~~LKaq 326 (466)
|...|+.++.+|..+...|+.||..||.-
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777777777778888888754
No 107
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=67.89 E-value=23 Score=38.11 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVK 342 (466)
Q Consensus 301 ~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~ 342 (466)
.|++++..|+++.+.-...=++|+..|+.++.+++..|.-|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777776666665558888888888888888776543
No 108
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=67.88 E-value=8 Score=27.31 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 305 RLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 305 ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
+++.|+.+...|..+|..|..++..|+.-
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34566777778888999999998888643
No 109
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=67.78 E-value=9.6 Score=30.83 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDI 309 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L 309 (466)
.||..|+.+...|+.|...|..+...|
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655555555544443333
No 110
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=67.73 E-value=44 Score=27.28 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
..+.....|+..+..|..+...|..++..+......|.++-..|..+++..+
T Consensus 32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555554443
No 111
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=67.69 E-value=22 Score=26.89 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 309 ISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 309 L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
++.+...+...|..|-.-+..-|.++....+.+++|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444444444444444
No 112
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=67.64 E-value=9.9 Score=31.23 Aligned_cols=49 Identities=24% Similarity=0.409 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLT-------DISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~-------~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
..+-.+|..|-.||.+|...-. +|-.+...|..|+..|+.++..+++-.
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~ 60 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAK 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3556677888888887766443 344566667777777777777775543
No 113
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=67.21 E-value=37 Score=29.47 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 274 ARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVET 329 (466)
Q Consensus 274 ARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~ 329 (466)
-|..+..=+.||-+||..-..|+........-|.++..+|..+...|.-|..++.+
T Consensus 47 lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 47 TRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555677788888888888777777777888888888888888887777663
No 114
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=66.64 E-value=4.3 Score=43.36 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
...+|+.++.+++.|.......|...++....|..+-+....+.+.|.++...+++...||.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~ 397 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLE 397 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999888888888887778888888888888888888777777777764
No 115
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.21 E-value=57 Score=28.74 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 298 ENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 298 ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
....|..+|+.|.++++.+..+=..||.+.+.|
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 344444444444444444444444444444444
No 116
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=66.20 E-value=3.4 Score=33.84 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 012287 321 RVLKADVETLRAK 333 (466)
Q Consensus 321 ~~LKaqve~Lr~k 333 (466)
.+||.+|.+|..+
T Consensus 18 evLKe~I~EL~e~ 30 (78)
T 1dip_A 18 EILKEQIRELVEK 30 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 117
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=65.92 E-value=40 Score=27.25 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDI---S---QKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L---~---q~~~~l~~EN~~LKaqve~Lr 331 (466)
++.++.|+.++..|+.+...|..++.+- . .++..+..+-..|..+++.+-
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999888652 1 233444444444444444443
No 118
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.86 E-value=9.5 Score=39.34 Aligned_cols=56 Identities=27% Similarity=0.410 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
...|...+..|..++..+++++..+..|+..|+.++..|+.++...++-++++...
T Consensus 37 ~~~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~ 92 (428)
T 4b4t_K 37 NSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSV 92 (428)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33455556666667777777777777778888888888888887777778888654
No 119
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=65.68 E-value=31 Score=25.45 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
|.+|+.|..+|..+...|..+......-=.-|..++..||.++
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 6677777777766666665544333333344555555555543
No 120
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=64.92 E-value=6.3 Score=29.92 Aligned_cols=30 Identities=10% Similarity=0.240 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 304 KRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 304 ~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
..+..|+.+...|..||..|+.++..|...
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777788889999999999988654
No 121
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=64.72 E-value=9.4 Score=30.77 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=16.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 266 RMLSNRESARRSRRRKQAHLTELETQVSQ 294 (466)
Q Consensus 266 RmLsNRESARRSR~RKq~~LeELE~qV~~ 294 (466)
|....-.+-|+-|.+=...+.+|..-|-.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~ 34 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVG 34 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccC
Confidence 33344455566565556677777665543
No 122
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=64.53 E-value=9.2 Score=27.02 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 304 KRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 304 ~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
.++...++....+..+|..|..++..|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 344444444445555555555555443
No 123
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=64.35 E-value=62 Score=26.98 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~R 343 (466)
.+.+++.+..+++.|...|.+++..+...+..+...=...+..++.-...+..+|.-|..
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~ 90 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333333332233333333333333433333333
No 124
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=64.06 E-value=52 Score=26.97 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 309 ISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 309 L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
|..+...+..|...||-+++.+..
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~ 48 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQY 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333333333444444444444433
No 125
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=63.62 E-value=42 Score=26.96 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
.+++...+..|+.+...++..+....++|+.|..-...|-.+|.+.|.
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666677888888888888888888763
No 126
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=63.56 E-value=43 Score=31.66 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=46.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN---RVLKADVETLRAKVKMAE 338 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN---~~LKaqve~Lr~kl~maE 338 (466)
+....+..-....+..-.+.+..+++++.++..++.+...+..++...+.+..... .| ..|..+++.+..+...+|
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666677778888888888888888888888877776654322 22 234445555544444444
Q ss_pred H
Q 012287 339 E 339 (466)
Q Consensus 339 ~ 339 (466)
+
T Consensus 111 ~ 111 (256)
T 3na7_A 111 R 111 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 127
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=62.94 E-value=64 Score=26.68 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 272 ESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (466)
Q Consensus 272 ESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~ 317 (466)
+.|..--..-...+.+++.+...++.+...|.+++..++..+..+.
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333444444555555555555555555555555544444333
No 128
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=62.77 E-value=13 Score=26.52 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 296 RVENSSLLKRLTDISQKYNEAAVDNRVLK 324 (466)
Q Consensus 296 e~ENs~L~~ql~~L~q~~~~l~~EN~~LK 324 (466)
-.||..|.+.++.-..+...|..+|.+|+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35788899988888888888888888875
No 129
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=61.85 E-value=55 Score=31.25 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 297 ~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
.||..|..++..++.+...+..+|.+|+.=++.++ -.-+++++|.+.
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q----~la~vi~~l~~~ 161 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ----YMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcC
Confidence 57889999999988888888889988887666543 334567888664
No 130
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.46 E-value=59 Score=32.77 Aligned_cols=41 Identities=7% Similarity=0.003 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 295 LRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 295 Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
.+.+......++..+.++...+.-+..++..+++..+++++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 33333333444444444444444444444444444444443
No 131
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=61.40 E-value=24 Score=36.05 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
+++|+.++..|+.+...|..++..+ ..++..|++++...+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDT-------ELGMKELNEILIKEE 44 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4555555555555555555554444 444455554444433
No 132
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=61.19 E-value=45 Score=26.95 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAV 318 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~ 318 (466)
|...|..|..|+..|..++..+++++..+..
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~e 32 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKD 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888776653
No 133
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=61.05 E-value=8.7 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 306 LTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 306 l~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
++.|+.+...|..+|..|..++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345666777788899999998888754
No 134
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.03 E-value=47 Score=28.60 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLK 324 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LK 324 (466)
+.....|.+|..|+.++.+|+.++.....-...+..+|..|+
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 344455667777777777777777666555555555555544
No 135
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=61.01 E-value=25 Score=36.13 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
.+.+|+.++.+|+.++..+..++..+.+++...+.+.+.|-.++++|
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555555555544444445554444444
No 136
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=60.39 E-value=72 Score=26.38 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q 311 (466)
.+|..|+.+|..|..++..+++
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666666666655544
No 137
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=60.11 E-value=17 Score=29.71 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 012287 316 AAVDNRVLKADVETL 330 (466)
Q Consensus 316 l~~EN~~LKaqve~L 330 (466)
+..+|..|+.+++.|
T Consensus 71 L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 71 LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555566555555
No 138
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.09 E-value=77 Score=27.31 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
.++..|+.+...++..+....++|+.|..=--.|..+|.+.
T Consensus 84 ~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatY 124 (131)
T 3tnu_A 84 EMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 139
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=59.86 E-value=12 Score=26.42 Aligned_cols=27 Identities=7% Similarity=0.190 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
++..||.||+.|-.++..|..++..++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356777888877777777766666554
No 140
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=59.85 E-value=34 Score=28.33 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
..||..|..++..+..+.. +...+...|+.|..++++|+.++
T Consensus 38 vdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHHHHH
Confidence 4666666555554444332 33446677888888887776554
No 141
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=59.77 E-value=80 Score=27.80 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEA 316 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l 316 (466)
..+|+.++..|+..|..|..++..+..++..+
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888888888887777777555
No 142
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=59.67 E-value=7.4 Score=29.62 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 311 QKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 311 q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
..+..+..||..|+.++..|+.
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555554433
No 143
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=59.66 E-value=84 Score=26.94 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKY 313 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~ 313 (466)
+..|+.++..|+..+..|...+.++...+
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554443
No 144
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.43 E-value=64 Score=26.70 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 270 NRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 270 NRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
|-+||=.+--|-|+-|. .++...+..|..+.++|.+. ...|+.|..+++.|+.++.
T Consensus 14 eLQSALeaEIqAKQ~i~---EELs~vr~~ni~~eskL~ea-------e~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLS---REMEAIRTDNQNFASQLREA-------EARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 66777666555544433 23455555666666555554 5566666666666655543
No 145
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=59.28 E-value=56 Score=34.48 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAV-----------DNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~-----------EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
..+.+|..+...|+.+...|+.+-..+.++...+.. +-..|++++..|..+++..|+..+.+.
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~ 143 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE 143 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666777777776666666666554432 224889999999999988887666653
No 146
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=59.22 E-value=48 Score=31.92 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAV 318 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~ 318 (466)
.....|+-+..|-.+-+ +.+..|+.++++.+.|+.++.+++...+++...+..
T Consensus 161 sde~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 161 NDSVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777666443 245667777777777777777766666555444433
No 147
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=58.41 E-value=76 Score=26.02 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
|=+..+..-..+++.|+.-...|..-=+.|......+..|-..|...++.|+.|.+..+
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666777777777777766666667777777778888888888877765554
No 148
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=58.04 E-value=79 Score=26.15 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDI 309 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L 309 (466)
-.++.++...+..|..|..++..+
T Consensus 41 i~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 41 QNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554444333
No 149
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.03 E-value=20 Score=30.01 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 275 RRSRRRKQAHLTELE----TQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 275 RRSR~RKq~~LeELE----~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
+|-+.+-.-|...=- .+...|+.++..|..++..|. .||..++.++..+.+++
T Consensus 29 ~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~-------~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLK-------QEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 344445444443322 234556666666655555544 55555555555554443
No 150
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=58.00 E-value=89 Score=26.71 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 012287 318 VDNRVLKADVETLRA 332 (466)
Q Consensus 318 ~EN~~LKaqve~Lr~ 332 (466)
.-...|..+++.|..
T Consensus 83 l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 83 LARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 151
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=57.33 E-value=44 Score=27.00 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAA 317 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~ 317 (466)
+|...|..|..|+..|..++..+++++..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999988887765
No 152
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.15 E-value=40 Score=43.29 Aligned_cols=74 Identities=12% Similarity=0.230 Sum_probs=41.6
Q ss_pred HHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Q 012287 260 DAKRVR--RMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK--------------YNEAAVDNRVL 323 (466)
Q Consensus 260 D~KR~R--RmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~--------------~~~l~~EN~~L 323 (466)
++||++ ...++-+.|+..-..+++.|.+|+.+++.|+.+-+.+..+-..++.+ ..+|..|+..-
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 445444 44555555666666677778888888777776655544433333332 22344555555
Q ss_pred HHHHHHHHHH
Q 012287 324 KADVETLRAK 333 (466)
Q Consensus 324 Kaqve~Lr~k 333 (466)
.+.++.|..+
T Consensus 2090 ~~~~~~l~~~ 2099 (3245)
T 3vkg_A 2090 EQQSENFNTQ 2099 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 153
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=56.78 E-value=1.3e+02 Score=28.31 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
.+..|+.++..++.+...|..++..+..+...+..+=..++.++..++..+.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666665555555555555555555555543
No 154
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=55.96 E-value=22 Score=25.40 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 306 LTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 306 l~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
+..|+.+...|..+|..|..++..|+..+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 344555566667778888888888766554
No 155
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=55.95 E-value=72 Score=31.99 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 302 LLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 302 L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
|.++...-+.+..+++.|=..|.++++.++++++..
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444434455566666666666666666666543
No 156
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=55.87 E-value=42 Score=32.54 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=45.7
Q ss_pred HHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 012287 261 AKRVRRMLSNRESA-RRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA-KVKMA 337 (466)
Q Consensus 261 ~KR~RRmLsNRESA-RRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~-kl~ma 337 (466)
-|-.=.-++|||.. +.+|.||+.-..++. .|+... --..++..|++++..++.+|.+..+++..+.+ +++.+
T Consensus 92 yR~~LK~IR~~E~svqp~R~~R~~l~~~I~----kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa 165 (234)
T 3plt_A 92 YRVTLKSIRNIEASVQPSRDRKEKITDEIA----HLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKAA 165 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHH
Confidence 33334567888866 666666665555443 333321 12357788888888888998888888877633 34433
No 157
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=55.00 E-value=12 Score=28.52 Aligned_cols=30 Identities=7% Similarity=0.269 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQK 312 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~ 312 (466)
.+|+++...+..|..||..|..++..++++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888888999999999998888877654
No 158
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=54.66 E-value=19 Score=25.38 Aligned_cols=29 Identities=10% Similarity=0.089 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 305 RLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 305 ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
++..|+.+...|..+|..|..++..|+.-
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34556667777888888888888887543
No 159
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=54.25 E-value=66 Score=24.42 Aligned_cols=27 Identities=0% Similarity=-0.012 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
.+++|..+|+.|..+...|...+..++
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554444433
No 160
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=53.90 E-value=51 Score=29.87 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccc
Q 012287 326 DVETLRAKVKMAEETVKRITGLNPLLQ 352 (466)
Q Consensus 326 qve~Lr~kl~maE~~v~Rl~~ln~~l~ 352 (466)
.+.+|++-++..+.+|+.|+..-.+|+
T Consensus 99 KLrELEADLKEKDsMVe~LT~TiG~Lr 125 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVESLTETIGILR 125 (167)
T ss_dssp HTHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHH
Confidence 456777788888888888877655543
No 161
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.63 E-value=46 Score=30.31 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 314 NEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 314 ~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
..+...|..|+.++..-+..+...+.-+..|
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333333
No 162
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=53.47 E-value=19 Score=25.66 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 307 TDISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 307 ~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
..|..+...|..+|..|..++..|+.-+...
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 3444455556677777777777776555443
No 163
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=53.17 E-value=94 Score=25.51 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETV 341 (466)
Q Consensus 301 ~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v 341 (466)
.|..++.+|.-+...+..|+..++.-...|+.+++..|+-.
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555555555554444433
No 164
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=52.83 E-value=62 Score=26.35 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQL 295 (466)
Q Consensus 282 q~~LeELE~qV~~L 295 (466)
...+..|..-|-.+
T Consensus 22 n~~f~~Lr~~vP~~ 35 (88)
T 1nkp_A 22 KRSFFALRDQIPEL 35 (88)
T ss_dssp HHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHCCCC
Confidence 45555665555444
No 165
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=52.76 E-value=94 Score=29.30 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=8.6
Q ss_pred CChHHHHHHHHHHH
Q 012287 140 QNLEDYQAVLKSKL 153 (466)
Q Consensus 140 ~dp~~Y~a~LK~kL 153 (466)
+..++|-+.||+=|
T Consensus 61 ~~~eey~~~l~~aL 74 (213)
T 1ik9_A 61 MEKGKYVGELRKAL 74 (213)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 35567877776543
No 166
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=52.62 E-value=22 Score=24.97 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 306 LTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 306 l~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
+..|+.+...+..+|..|..++..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345666777788888888888888754
No 167
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.44 E-value=47 Score=26.89 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTD 308 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~ 308 (466)
.|...|.+||.++.+...+...|+.++..
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666655555543
No 168
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=52.37 E-value=59 Score=24.07 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLT 307 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~ 307 (466)
++.+++.++..++.+-..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~k~~~~ 36 (60)
T 3htk_A 13 QVEELTEKCSLKTDEFLKAKEKIN 36 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444433333333333
No 169
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.34 E-value=30 Score=28.76 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 297 VENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (466)
Q Consensus 297 ~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve 328 (466)
.||..|..++..++.+...+..+|..|+.=++
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777766555555555555554433
No 170
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=52.08 E-value=2.1e+02 Score=30.18 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 321 RVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 321 ~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
+.|+..++.|+.+++..+..+..+
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777776666655443
No 171
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=51.75 E-value=19 Score=25.74 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 300 SSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (466)
Q Consensus 300 s~L~~ql~~L~q~~~~l~~EN~~LKaqve 328 (466)
+.|-.+++..-.+...|+.+|+.|..++.
T Consensus 9 q~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 9 QELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666677777777777664
No 172
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=51.71 E-value=87 Score=33.03 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCCCCCCCC
Q 012287 320 NRVLKADVETLRAKVKMAEETVKRITGLNPLLQGSPEMSSMSMS 363 (466)
Q Consensus 320 N~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~~~~~~~~~~mp 363 (466)
-+.|+.++.+|..++...++-+..+ +..++++..-.+|
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~------l~~iPN~~~~~vP 150 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL------MLNVGNILHESVP 150 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HTTCCCCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHhCCCCCCccCC
Confidence 5566666666666665555433332 3334444444555
No 173
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=51.06 E-value=62 Score=25.91 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLT 307 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~ 307 (466)
..||..|+.++..|+.|+..|..++.
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666655555443
No 174
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=50.26 E-value=11 Score=28.34 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRL 306 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql 306 (466)
.|+++|+.++..|+.+...|...+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998888776654
No 175
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=50.18 E-value=64 Score=33.04 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccC
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYN----------EAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQG 353 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~----------~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~~ 353 (466)
.+.+|..+...|+.+...|+.+-..+.++.. .+..+=+.|+.++.+|..++...++-+..+ +..
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 104 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT------LLW 104 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH------HHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHh
Confidence 3444445555555555555555555544433 234455666777777776666665544433 333
Q ss_pred CCCCCCCCCC
Q 012287 354 SPEMSSMSMS 363 (466)
Q Consensus 354 ~~~~~~~~mp 363 (466)
++++..-.+|
T Consensus 105 ipN~~~~~vp 114 (425)
T 2dq3_A 105 IPNLPHPSVP 114 (425)
T ss_dssp SCCCCCTTSC
T ss_pred CCCCCCCCCC
Confidence 4444444555
No 176
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=50.05 E-value=6.5 Score=29.73 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDI 309 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L 309 (466)
.||.-|..|+..|..|.+.+..|
T Consensus 21 klenivarlendnanlekdianl 43 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANL 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHH
Confidence 34444444444444444444333
No 177
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=48.67 E-value=58 Score=26.19 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 310 SQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 310 ~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
+++...+..++..|+.+.+.|++++
T Consensus 53 ~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 53 EDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555554443
No 178
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=48.21 E-value=8.5 Score=36.97 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 012287 295 LRVENSSLLKRLTDIS 310 (466)
Q Consensus 295 Le~ENs~L~~ql~~L~ 310 (466)
|..||+.|++++..|+
T Consensus 24 l~~eN~~Lk~e~~~l~ 39 (255)
T 2j5u_A 24 TYTENQHLKERLEELA 39 (255)
T ss_dssp --CTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 179
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=46.98 E-value=24 Score=30.31 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 313 YNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 313 ~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
...+..+|..|..++++|+.+++
T Consensus 93 ~~~l~~~n~~L~~riqeLE~~a~ 115 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEMQAR 115 (118)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888876543
No 180
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=46.88 E-value=80 Score=33.34 Aligned_cols=55 Identities=20% Similarity=0.102 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQKYNEAAVDN----------RVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN----------~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
.++-.|-.+-..|..++..|+.+.+.+..+= ..|++++..|..+++..|+.++.+
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544321 234445555555555554444444
No 181
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=46.56 E-value=1.4e+02 Score=27.01 Aligned_cols=41 Identities=10% Similarity=-0.008 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLK 324 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LK 324 (466)
..+.++.++..|+......-.+.....+....|..+...|.
T Consensus 71 rEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lE 111 (155)
T 2efr_A 71 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 111 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333333333333333333
No 182
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=46.32 E-value=18 Score=29.25 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
+|..++..++..+.-|..=+.+.......|..+|+.||.+|..|++
T Consensus 19 el~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 19 ELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444555567777788877777643
No 183
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=46.28 E-value=1e+02 Score=23.90 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 318 VDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 318 ~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
.||..|+.-+++=++.-+..|.++.++
T Consensus 24 qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 24 QDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333333333344444444
No 184
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.89 E-value=75 Score=32.89 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 300 SSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETV 341 (466)
Q Consensus 300 s~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v 341 (466)
..|..++..|+++...-...=++|+..|+.++.+++..|.-|
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666655544444677777777777766666544
No 185
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=44.44 E-value=1e+02 Score=23.38 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
+..|+.++..++.-...+...+..+.-....+..++...+..++.|+.++...+.
T Consensus 7 ~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~ 61 (66)
T 3m0a_A 7 CESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLER 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHH
Confidence 3445555555555444555555555555555555556666677777666554443
No 186
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.03 E-value=79 Score=34.09 Aligned_cols=48 Identities=13% Similarity=0.237 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVE 328 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve 328 (466)
+.+|-+||++++..|+.+...-..+|..|+..+..+..+=+.|..+|.
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444666666666665555545555555544444444444444333
No 187
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=43.92 E-value=30 Score=33.17 Aligned_cols=52 Identities=25% Similarity=0.266 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
-+.=.|.|+..|+.+|..|..+++.|. ....+|..+-.++..|..++-.+++
T Consensus 66 aVSL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l~l~LL~a~s 117 (252)
T 3e98_A 66 AVSLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRLVLDLLDATS 117 (252)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 355667788888888888888887764 4667899999999998888765544
No 188
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=43.86 E-value=37 Score=23.31 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 308 DISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 308 ~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
.|....+.+...|-.-|+++++||.++
T Consensus 5 alkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 5 ALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444555677777777788777664
No 189
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=43.58 E-value=31 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
+.|..-+..|+.||.+|+.++.++-
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888777654
No 190
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=43.52 E-value=1.3e+02 Score=24.21 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=51.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 262 KRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 262 KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
|.++.-+-++.. ....|-...+.++..++..|+.+...++..+....++|+.|..=-..|-.+|.+.|.-
T Consensus 7 ~~~~~sLE~~l~--e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 7 KGTNESLERQMR--EMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444444443333 3334445567888888999999999999999988899999998888999999888643
No 191
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=43.25 E-value=1.9e+02 Score=26.20 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
++..+.++..|+.+...+...+..|.-.-......-..+..+|..|..+++.|+
T Consensus 37 ae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE 90 (155)
T 2efr_A 37 AELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 90 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333333333222222233334444444444444443
No 192
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=42.73 E-value=40 Score=26.79 Aligned_cols=11 Identities=0% Similarity=0.002 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 012287 284 HLTELETQVSQ 294 (466)
Q Consensus 284 ~LeELE~qV~~ 294 (466)
||..|+.++..
T Consensus 48 YI~~L~~~~~~ 58 (83)
T 1nkp_B 48 YIQYMRRKNHT 58 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 193
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=42.72 E-value=1.3e+02 Score=24.23 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 292 VSQLRVENSSLLKRLT----DISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~----~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
.+.|-.||..|+..+. .+.+.|..|..=-..=|.+-+=|..|.+.|.++|.||..
T Consensus 10 ~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~~ 68 (70)
T 3brv_B 10 LQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666666655443 233344444443334455555667788888888888864
No 194
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=42.53 E-value=16 Score=24.28 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012287 316 AAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 316 l~~EN~~LKaqve~Lr~kl 334 (466)
++.||..|.+++.+|.+++
T Consensus 5 lefendaleqkiaalkqki 23 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 195
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=42.39 E-value=2e+02 Score=26.09 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 012287 326 DVETLRAKVKMAEET 340 (466)
Q Consensus 326 qve~Lr~kl~maE~~ 340 (466)
++..+.+.+..++..
T Consensus 68 e~~~~QRn~~K~~~~ 82 (167)
T 4gkw_A 68 ELGTAQRNLEKADQL 82 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHH
Confidence 333333333333333
No 196
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.37 E-value=22 Score=31.10 Aligned_cols=30 Identities=7% Similarity=0.140 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 308 DISQKYNEAAVDNRVLKADVETLRAKVKMA 337 (466)
Q Consensus 308 ~L~q~~~~l~~EN~~LKaqve~Lr~kl~ma 337 (466)
++..+...+..+++.|+.+++.|+.++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666777777777776665443
No 197
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=42.16 E-value=0.56 Score=39.55 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 012287 260 DAKRVRRMLSNRESARRSRRRKQ 282 (466)
Q Consensus 260 D~KR~RRmLsNRESARRSR~RKq 282 (466)
-.+..||.-+||.+|+++|+||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 45778899999999999999985
No 198
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=42.14 E-value=3.6e+02 Score=29.06 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
++..|++.++++.|...-.+-++..+++......-=..+|..+.+...+|..+..-++.+.
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~ 376 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFN 376 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhh
Confidence 4555555555555554443333333333222222223445555555555555544444443
No 199
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=42.12 E-value=88 Score=29.77 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHh
Q 012287 281 KQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKAD--VETL---RAKVKMAEETVKRIT 345 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaq--ve~L---r~kl~maE~~v~Rl~ 345 (466)
+.+.+.+...-+-+...||-.|..+...+++...-...=-++|--. ++.+ .+|-+|++.+++.+.
T Consensus 113 ~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v~~e~~~r~~eQ~~mv~wV~~~V~ 182 (214)
T 2cly_A 113 SQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKRVV 182 (214)
T ss_dssp HHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444456677777777776666555544444444332 2222 233455555555553
No 200
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=42.11 E-value=32 Score=23.61 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 307 TDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 307 ~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
..|..+....+.||-.|.+++..|+..
T Consensus 4 aqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 344555566788999999999888654
No 201
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=42.11 E-value=1.3e+02 Score=28.24 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDI 309 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L 309 (466)
+.+..|..++..|+.+...|..++..+
T Consensus 139 ~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 139 AKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555444443
No 202
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=42.02 E-value=64 Score=32.32 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~R 343 (466)
+|+++|+.+++.|+.+...|..++..-. .......+=++|..+++.+..++..++.++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEKRP-ENKKAHNKRDNLQQQLDANEQKIEEGKRLQEE 306 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555544432110 01112233356777777777777777666544
No 203
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=41.81 E-value=1.7e+02 Score=25.14 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~R 343 (466)
.+.+.+..+..|......|..++..+..++......|..|.+.-..|...+...+.-++-
T Consensus 63 ~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 63 NLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777777777777777777777666666555444443
No 204
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=41.63 E-value=94 Score=28.57 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 303 LKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 303 ~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
..++...++.|..+ |..|+.++..|
T Consensus 185 e~el~~ak~~ye~l---n~~L~~eLp~l 209 (251)
T 2fic_A 185 EEELIKAQKVFEEM---NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 33444444444433 67777777766
No 205
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=41.61 E-value=40 Score=23.76 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 306 LTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 306 l~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
+..|..+...|..+|..|..++..|+.-
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445556667778888888888887643
No 206
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=41.13 E-value=1.8e+02 Score=25.25 Aligned_cols=12 Identities=33% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHhccCcccc
Q 012287 341 VKRITGLNPLLQ 352 (466)
Q Consensus 341 v~Rl~~ln~~l~ 352 (466)
+.||...|..|.
T Consensus 93 L~rLQ~eNd~L~ 104 (112)
T 1x79_B 93 LVRLQKDNDSLQ 104 (112)
T ss_dssp ------------
T ss_pred HHHHHhhccchh
Confidence 355666666554
No 207
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=40.73 E-value=1.5e+02 Score=31.48 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~R 343 (466)
++...+.+..+.++ ...|..++..|+++...-...=++|+..|+.++.+++..|.-|+-
T Consensus 99 ~~q~~dndn~~~e~---S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 99 LEGAQQLDENYGHV---STELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333 345778888888877766655588999999999998888876553
No 208
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=40.31 E-value=42 Score=31.42 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
..+.+|..++.+|+.||..|+.+.+...+
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666655554443
No 209
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.09 E-value=1.8e+02 Score=24.97 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYN 314 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~ 314 (466)
+..|+.++..|+..+..|...+.+++..+.
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSLEETKGRYC 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 445555555555556666666655555443
No 210
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=40.08 E-value=1.1e+02 Score=22.72 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 301 SLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 301 ~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
-|++++..|......++.+...|..-+..||.
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrd 38 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRD 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHH
Confidence 33344444433333333333444444444443
No 211
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=39.90 E-value=35 Score=24.08 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 305 RLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 305 ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
++..|+.+...+..+|..|..++..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3455666777778888888888887754
No 212
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=39.80 E-value=44 Score=22.22 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 293 SQLRVENSSLLKRLTDISQKYNEA 316 (466)
Q Consensus 293 ~~Le~ENs~L~~ql~~L~q~~~~l 316 (466)
..|+.||..|.+++..|.++...+
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 467888888888888777766554
No 213
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.61 E-value=1.8e+02 Score=24.81 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSS 301 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~ 301 (466)
|.+|..++..+..+|..
T Consensus 22 I~~LR~qid~~~~e~a~ 38 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKAR 38 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 214
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=39.60 E-value=59 Score=32.10 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 289 ETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 289 E~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
+.+++.|+.+++.|..+++.|+++...+...| ..+++.|+..+
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n---~~rl~~Lqk~~ 226 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKAN---AERLKRLQKSA 226 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHH
Confidence 45666677777777777777766554444433 44444454444
No 215
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=39.16 E-value=2.2e+02 Score=25.80 Aligned_cols=68 Identities=9% Similarity=-0.020 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 012287 285 LTELETQVSQLRVENSSLLKRL------------TDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPLLQ 352 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql------------~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ln~~l~ 352 (466)
+.+|+.+...|..++..+.... ..+.+........-..+.+++..|+.++...+.-...|...+.+..
T Consensus 35 ~~~le~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIse 114 (146)
T 2xnx_M 35 ALEKELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISD 114 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Confidence 3455666666666655554433 5555555555556666667777777666666665666766666543
No 216
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=39.14 E-value=6.3 Score=33.48 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 012287 293 SQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA----DVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 293 ~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKa----qve~Lr~kl~maE~~v~Rl 344 (466)
..+..|.-.|.++++.|.-+++.+..||..||. +-.-|+.|+.-+...|+||
T Consensus 39 ~~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qKtqkal~ESKL~~~kk~ie~l 94 (95)
T 3n7n_E 39 KKVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQKNQKALYQSKLSSKDAFIDDL 94 (95)
T ss_dssp --------------------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566777788888888888888888887754 5556777777777777776
No 217
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=38.82 E-value=62 Score=26.80 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~ 314 (466)
.+++.+.+.+...|+..|..|..++.+|+.+..
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~qa~ 80 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEMQAR 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 367788899999999999999999998876543
No 218
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.56 E-value=90 Score=27.92 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
+..|...+.....|...|..++..-......++.++..+..+++.|.+.
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555554445555555555555555555444
No 219
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=38.56 E-value=1.7e+02 Score=24.25 Aligned_cols=25 Identities=4% Similarity=0.117 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 294 QLRVENSSLLKRLTDISQKYNEAAV 318 (466)
Q Consensus 294 ~Le~ENs~L~~ql~~L~q~~~~l~~ 318 (466)
.|+.+...|..+|..++.+...+..
T Consensus 29 ~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 29 DVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333333333
No 220
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=38.49 E-value=1.1e+02 Score=32.51 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEA-AVDNRVL---KADVETLRAKVKMAEET 340 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l-~~EN~~L---Kaqve~Lr~kl~maE~~ 340 (466)
+.++..+-..++.||..++++....+.+|... ..-|..| ++++.+..++++.-++-
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~ 95 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDE 95 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666777777777777766666543 2233333 55556666666555543
No 221
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=38.24 E-value=1.7e+02 Score=24.19 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNE 315 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~ 315 (466)
.+.|.+|.-+|..|+.|-.+...+|.....++..
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~ 58 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQ 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3566677777777777766666666555444433
No 222
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.95 E-value=1.9e+02 Score=24.68 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
+.++..++..|+.+...++..+....++|+.|..=--.|..+|.+.|
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555556655555555555555554
No 223
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=37.67 E-value=2.1e+02 Score=25.08 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
|..+...|..+...+......|..++..|...|..|+.++..++.+.
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444455555555555555554333
No 224
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=37.14 E-value=1.1e+02 Score=29.28 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 292 VSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 292 V~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
+++|+.+-.+...+..+|+.....+..||..|+..+..|+
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 4566666666777777777777777778888877777663
No 225
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=36.73 E-value=1.5e+02 Score=22.99 Aligned_cols=14 Identities=14% Similarity=0.340 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 012287 319 DNRVLKADVETLRA 332 (466)
Q Consensus 319 EN~~LKaqve~Lr~ 332 (466)
|-.+||..+..|+.
T Consensus 57 Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 57 ESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 226
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.61 E-value=48 Score=34.09 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
.+|..++..|+.+...|..+...++
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~ 69 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIK 69 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444433
No 227
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=36.49 E-value=40 Score=23.82 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 306 LTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 306 l~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
+..|+.+...+..+|..|..++..|+.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345566667777888888888877753
No 228
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=36.26 E-value=85 Score=21.55 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDI 309 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L 309 (466)
.|.+++..|+.|...|+-++..|
T Consensus 6 alkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 229
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.83 E-value=1.9e+02 Score=24.02 Aligned_cols=50 Identities=8% Similarity=0.124 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
..+..+...+..|+.+...++..+....++|+.|..--..|..+|.+.|.
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrk 86 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRK 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777777777888888877888888888754
No 230
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=35.52 E-value=1.9e+02 Score=23.85 Aligned_cols=29 Identities=7% Similarity=0.298 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 304 KRLTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 304 ~ql~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
..+..|+++...+..+|..|..++..|..
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666655543
No 231
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=35.34 E-value=2.2e+02 Score=27.12 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 321 RVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 321 ~~LKaqve~Lr~kl~maE~~v~R 343 (466)
..++++++.++++++.++.-++.
T Consensus 125 ~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 125 NNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 232
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.97 E-value=31 Score=27.35 Aligned_cols=9 Identities=11% Similarity=0.272 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 012287 282 QAHLTELET 290 (466)
Q Consensus 282 q~~LeELE~ 290 (466)
...+.+|..
T Consensus 28 n~~f~~Lr~ 36 (80)
T 1hlo_A 28 KDSFHSLRD 36 (80)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344455544
No 233
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=34.68 E-value=1.4e+02 Score=24.21 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012287 282 QAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRITG 346 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~ 346 (466)
...+.+-..++..|..-..+|+.+|....+-...|+.++..++..+..|..++.-+....+-+.+
T Consensus 9 ~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~~~~~~~~~~ 73 (74)
T 2q6q_A 9 NFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDANSTFKEMRF 73 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccccchhhHhccC
No 234
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=34.45 E-value=1.2e+02 Score=23.56 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
=.|..+|..|+.||..|.+.+.+ -..-|.+++.+-+++
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEe-----------EqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEE-----------EQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 35667788888888777765543 234455666665544
No 235
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=34.25 E-value=1.8e+02 Score=23.37 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q 311 (466)
.+.++|.+-..|+.....|..++..-+.
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~ 35 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQS 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 236
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=34.18 E-value=48 Score=27.65 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q 311 (466)
++..|+.+|..|..++.+++.
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~ 33 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELED 33 (95)
T ss_dssp -----CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 237
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=33.87 E-value=1.5e+02 Score=28.38 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 300 SSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 300 s~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
..+++++..++++......|+..++++++..|+++..+.+--+++.
T Consensus 174 ~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 174 SEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444455555566666667888888888888888887777766653
No 238
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=33.83 E-value=2.3e+02 Score=24.51 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLL 303 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~ 303 (466)
..|+.|..+|..|+.+...|.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555553
No 239
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=33.49 E-value=22 Score=26.86 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012287 282 QAHLTELETQVSQLRVENSSL 302 (466)
Q Consensus 282 q~~LeELE~qV~~Le~ENs~L 302 (466)
..|+++||.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999888766554
No 240
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.08 E-value=98 Score=25.03 Aligned_cols=25 Identities=4% Similarity=0.215 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 305 RLTDISQKYNEAAVDNRVLKADVET 329 (466)
Q Consensus 305 ql~~L~q~~~~l~~EN~~LKaqve~ 329 (466)
.+..++.+....+.+.+.|+.++-.
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455544443
No 241
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=32.94 E-value=1.6e+02 Score=30.34 Aligned_cols=28 Identities=7% Similarity=0.016 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 318 VDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 318 ~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
.+=+.|+..+..++.++...+..+..|.
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444555555555555555555454443
No 242
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=32.81 E-value=69 Score=22.47 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 307 TDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 307 ~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
..|+.+...+..+|..|..++..|+.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555666777777777776643
No 243
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=32.19 E-value=1.9e+02 Score=23.05 Aligned_cols=14 Identities=7% Similarity=-0.052 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 012287 294 QLRVENSSLLKRLT 307 (466)
Q Consensus 294 ~Le~ENs~L~~ql~ 307 (466)
.++.....|..++.
T Consensus 9 ~~~~~i~~lE~eL~ 22 (74)
T 2xv5_A 9 TSRRLLAEKEREMA 22 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 244
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=31.62 E-value=66 Score=25.42 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012287 315 EAAVDNRVLKADVETLRA 332 (466)
Q Consensus 315 ~l~~EN~~LKaqve~Lr~ 332 (466)
.|..++..|+.+++.|++
T Consensus 61 ~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 61 YMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455566666666666654
No 245
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=31.00 E-value=26 Score=31.29 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012287 318 VDNRVLKADVETLRAKVKM 336 (466)
Q Consensus 318 ~EN~~LKaqve~Lr~kl~m 336 (466)
..|..|+-+++.|++.++|
T Consensus 55 ~~~d~L~lQ~esmeaalkm 73 (130)
T 3cl3_D 55 VQVDQLRMQGQSVEAALRM 73 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555444444
No 246
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.92 E-value=1.6e+02 Score=21.67 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLR 331 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr 331 (466)
+..|+..+..+..+...+..++..+..++..+..+=...+..|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555554444444444444443
No 247
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=30.84 E-value=16 Score=35.02 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRL 306 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql 306 (466)
|..+.+.|+.||..|..++
T Consensus 24 l~~eN~~Lk~e~~~l~~~~ 42 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLE 42 (255)
T ss_dssp --CTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 248
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=30.57 E-value=2.9e+02 Score=24.56 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=41.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 261 ~KR~RRmLsNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
.-|.++.|-||.-+--- .|..||.+++..+.-...--.++..+.+++..+..+-..-..+++....++...++
T Consensus 36 ~eR~~k~lE~r~~~deE------r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEe 108 (147)
T 2b9c_A 36 SERGMKVIESRAQKDEE------KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 108 (147)
T ss_dssp HTHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHH------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778887765443 46667777666665555555555555555555555555555555555555444443
No 249
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=29.61 E-value=2.1e+02 Score=25.43 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH
Q 012287 285 LTELETQVSQLRV-ENSSLLKRLTD 308 (466)
Q Consensus 285 LeELE~qV~~Le~-ENs~L~~ql~~ 308 (466)
++.|+.++..|+. +-..+..++..
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~ 35 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTW 35 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3455555555532 34444444443
No 250
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=29.60 E-value=2.5e+02 Score=24.58 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 279 ~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
.+|++-..|+|.++++++.+...+..++ +.+=..-+.+++.++.+|.|-.-
T Consensus 57 ~kklqLkse~e~E~ae~k~KYD~~lqe~----------ese~~~kkK~le~~~~kV~mNk~ 107 (115)
T 3vem_A 57 EKKSILKAELERKMAEVQAEFRRKFHEV----------EAEHNTRTTKIEKDKNLVIMNKL 107 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776655554433 33444456667777766655543
No 251
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=29.35 E-value=1.3e+02 Score=20.96 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 301 SLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 301 ~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
.|..++..|.+++..++-.-..|+.++.+|
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666667777777767777776655
No 252
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=29.24 E-value=82 Score=27.08 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAV 318 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~ 318 (466)
+....+.|...|+.++.+|++++.....
T Consensus 12 ~~~~~e~e~~~l~~~~~el~~~l~~~~~ 39 (125)
T 1joc_A 12 RCLKGEGEIEKLQTKVLELQRKLDNTTA 39 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666665555544433
No 253
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.83 E-value=45 Score=22.17 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 012287 318 VDNRVLKADVETLR 331 (466)
Q Consensus 318 ~EN~~LKaqve~Lr 331 (466)
..|..||+++.+|+
T Consensus 7 qknarlkqeiaale 20 (28)
T 3ra3_B 7 QKNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHH
Confidence 33444444444443
No 254
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=28.77 E-value=2.7e+02 Score=23.59 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 309 ISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 309 L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
+++.+.....+|..|..++..|..
T Consensus 73 lq~~l~~~~~~~~~l~~~~~~l~~ 96 (107)
T 2no2_A 73 LQGSLETSAQSEANWAAEFAELEK 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666666655543
No 255
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=28.68 E-value=1.7e+02 Score=28.45 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=45.3
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 256 MDPVDAKRVRRMLSNRESARRSRR-RKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 256 ~d~~D~KR~RRmLsNRESARRSR~-RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~L 330 (466)
-.....|+++.-+-++.-==--|+ ==...|.|+..|++.|..--..+..+|+.+++.=..|+.+-..++.+++-+
T Consensus 149 YSl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 149 YSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345567776654433222111111 113567788888888888888888888777776666666666666665554
No 256
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=28.45 E-value=1.1e+02 Score=26.63 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLL 303 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~ 303 (466)
.+.+|+.+|..++..+..|+
T Consensus 5 e~~~l~~qi~~~ekr~~RLK 24 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLK 24 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554443
No 257
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=28.26 E-value=1.9e+02 Score=23.70 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 012287 323 LKADVETLRAKV 334 (466)
Q Consensus 323 LKaqve~Lr~kl 334 (466)
-+.++..|..++
T Consensus 93 r~~q~~~L~~kf 104 (127)
T 1ez3_A 93 RKTQHSTLSRKF 104 (127)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 258
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.00 E-value=3e+02 Score=23.89 Aligned_cols=44 Identities=11% Similarity=0.168 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 291 QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 291 qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
+|..|+.+..-.+.-+..=+.....+..+...|..+++.|.+++
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 56667777766666666655666677778888888888887765
No 259
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=27.67 E-value=3.9e+02 Score=25.14 Aligned_cols=31 Identities=10% Similarity=0.315 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 278 RRRKQAHLTELETQVSQLRVENSSLLKRLTD 308 (466)
Q Consensus 278 R~RKq~~LeELE~qV~~Le~ENs~L~~ql~~ 308 (466)
+.||.+-++-|..++..|+.|-..|...+..
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888999998888887766543
No 260
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.24 E-value=1.7e+02 Score=29.30 Aligned_cols=7 Identities=0% Similarity=0.235 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 012287 324 KADVETL 330 (466)
Q Consensus 324 Kaqve~L 330 (466)
+.+|..|
T Consensus 46 ~~~i~~l 52 (323)
T 1lwu_C 46 QQQLVDI 52 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 261
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.12 E-value=88 Score=24.93 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 279 RRKQAHLTELETQVSQLRVENSSLLKRLTDIS 310 (466)
Q Consensus 279 ~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~ 310 (466)
+.|...+.+||..+..-..|+..|+.++..++
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888887777777777766665443
No 262
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=26.84 E-value=87 Score=23.63 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 312 KYNEAAVDNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 312 ~~~~l~~EN~~LKaqve~Lr~kl~maE~ 339 (466)
....++.+|..|..++..|+..+.-.|.
T Consensus 25 ivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 25 IVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3445567788888888887766655544
No 263
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.74 E-value=1.7e+02 Score=26.87 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 312 KYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 312 ~~~~l~~EN~~LKaqve~Lr~k 333 (466)
+...+..|-..|+.++...|.+
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666655433
No 264
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=26.62 E-value=3.7e+02 Score=24.53 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 312 KYNEAAVDNRVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 312 ~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
++..+..+=...+++++.+++++..++..+++.+
T Consensus 99 ~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~ 132 (277)
T 2f1m_A 99 EYDQALADAQQANAAVTAAKAAVETARINLAYTK 132 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCE
Confidence 3334444444556667777777776666555554
No 265
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=26.29 E-value=1.5e+02 Score=27.13 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012287 278 RRRKQAHLTELETQVSQL 295 (466)
Q Consensus 278 R~RKq~~LeELE~qV~~L 295 (466)
-++|++||.||..|...+
T Consensus 21 I~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 21 IKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777776655443
No 266
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=26.03 E-value=2.1e+02 Score=21.59 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 290 TQVSQLRVENSSLLKRLTDISQ 311 (466)
Q Consensus 290 ~qV~~Le~ENs~L~~ql~~L~q 311 (466)
.++.+|..+...|..++..|+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544443
No 267
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=26.02 E-value=1.5e+02 Score=20.36 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKY 313 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~ 313 (466)
+..|..+|+.|+..|-.-++++..|+.++
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34566667777777766666666665543
No 268
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.85 E-value=4e+02 Score=28.56 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 261 AKRVRRMLSNRESARRSRRRKQAHLTE-LETQVSQLRVENSS-LLKRLTD-ISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 261 ~KR~RRmLsNRESARRSR~RKq~~LeE-LE~qV~~Le~ENs~-L~~ql~~-L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
+.++|......+.-.||=+...+.|.+ ||.+-..+..|+.. |..++.+ -.--..+...+...|+.+|..|+.+
T Consensus 507 ~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 507 HEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 269
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=25.76 E-value=3e+02 Score=24.23 Aligned_cols=24 Identities=8% Similarity=0.325 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH
Q 012287 285 LTELETQVSQLRV-ENSSLLKRLTD 308 (466)
Q Consensus 285 LeELE~qV~~Le~-ENs~L~~ql~~ 308 (466)
++.|+.++..|+. +-..+...+..
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~ 35 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAE 35 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhHhhHHH
Confidence 3455556666654 34444444443
No 270
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.65 E-value=3.2e+02 Score=26.32 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQK-YNEAAVDNRVLKADVE 328 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~-~~~l~~EN~~LKaqve 328 (466)
..+.+|+.+++.|+.+...+..++..+..+ ...+..-...|+.+..
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~ 272 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVA 272 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777776666666655 3334433344433333
No 271
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.53 E-value=3.6e+02 Score=25.72 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 308 DISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 308 ~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
.|..+...+..|...||.+...|+.
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444333
No 272
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.39 E-value=3.2e+02 Score=23.32 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 293 SQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVK 335 (466)
Q Consensus 293 ~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl~ 335 (466)
+.|+.-...|..+|..|..+-=.++..-..-.-+|..|+.++.
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~ 87 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIN 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHH
Confidence 3455555566666665555444444444444456666655543
No 273
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.18 E-value=39 Score=35.99 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=5.0
Q ss_pred HHHHHHHHHHh
Q 012287 260 DAKRVRRMLSN 270 (466)
Q Consensus 260 D~KR~RRmLsN 270 (466)
++|-+|.+.++
T Consensus 311 e~~~~~~~e~~ 321 (575)
T 2i1j_A 311 EEKLAKQAQRE 321 (575)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 274
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=24.55 E-value=1.6e+02 Score=23.43 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 284 HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKA 325 (466)
Q Consensus 284 ~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKa 325 (466)
+.+++..++..|+.|-.-...+|..+.--++....++..|..
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~ 58 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQ 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 445555556666665555555666555555554444433333
No 275
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.02 E-value=1.6e+02 Score=25.49 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 287 ELETQVSQLRVENSSLLKRLTDISQKYNE 315 (466)
Q Consensus 287 ELE~qV~~Le~ENs~L~~ql~~L~q~~~~ 315 (466)
+|..+|..|..|+..|.+++..++.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666655443
No 276
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=23.64 E-value=3e+02 Score=23.43 Aligned_cols=58 Identities=22% Similarity=0.274 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 277 SRRRKQAHLTELE------T-QVSQLRVENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKV 334 (466)
Q Consensus 277 SR~RKq~~LeELE------~-qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~kl 334 (466)
-|..|+++|.|-- . -.++|+.-...|..+|..|..+-=.++..-..-.-+|..|+.++
T Consensus 22 e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV 86 (107)
T 1ytz_T 22 ARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRI 86 (107)
T ss_dssp HHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence 3455677777521 0 22346666666666666666554445554444455666666554
No 277
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.52 E-value=83 Score=22.66 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLK 304 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ 304 (466)
..|..|+.++..|+.|..+|.-
T Consensus 15 eQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655543
No 278
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.03 E-value=1.3e+02 Score=21.20 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012287 319 DNRVLKADVETLRAKVKMAEE 339 (466)
Q Consensus 319 EN~~LKaqve~Lr~kl~maE~ 339 (466)
+|....++|+.|+++....|+
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~ 28 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHH
Confidence 334444444444444333333
No 279
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.57 E-value=3.1e+02 Score=22.19 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 286 TELETQVSQLRVENSSLLKRLT 307 (466)
Q Consensus 286 eELE~qV~~Le~ENs~L~~ql~ 307 (466)
.+|..++..+..+|..|..++.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~d 24 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERD 24 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4455555555555555444443
No 280
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.43 E-value=1.7e+02 Score=27.28 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 283 AHLTELETQVSQLRVENSSLLKRLTDISQKYN 314 (466)
Q Consensus 283 ~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~ 314 (466)
.++.-+-.++..|+.+|..|.+++..|+++.+
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888887766655555443
No 281
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.25 E-value=4.4e+02 Score=23.87 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 315 EAAVDNRVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 315 ~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
....+-..+..++..|+.+++.++.+++++...
T Consensus 105 ~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~q 137 (154)
T 2ocy_A 105 DARKEKYAIEILNKRLTEQLREKDTLLDTLTLQ 137 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667888888889999998888887543
No 282
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=22.13 E-value=3.8e+02 Score=23.04 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=7.5
Q ss_pred HHHHHhHHHHH
Q 012287 265 RRMLSNRESAR 275 (466)
Q Consensus 265 RRmLsNRESAR 275 (466)
+|+-+|+++-+
T Consensus 34 ~ri~~NtqaI~ 44 (114)
T 2xzr_A 34 GRVTRNTQSIE 44 (114)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhHHHHH
Confidence 46677777765
No 283
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.89 E-value=2.8e+02 Score=21.37 Aligned_cols=35 Identities=6% Similarity=0.101 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 285 LTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD 319 (466)
Q Consensus 285 LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~E 319 (466)
+++|...|..-..+....+.++.++++.++.|..|
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~e 71 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTME 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444444445555555544444443
No 284
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=21.78 E-value=3.1e+02 Score=21.89 Aligned_cols=13 Identities=8% Similarity=0.135 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 012287 316 AAVDNRVLKADVE 328 (466)
Q Consensus 316 l~~EN~~LKaqve 328 (466)
++.+=..+|.+++
T Consensus 38 lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 38 LQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444433
No 285
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=21.77 E-value=4.1e+02 Score=25.00 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 313 YNEAAVDNRVLKADVETLRAKVKMAEETVKR 343 (466)
Q Consensus 313 ~~~l~~EN~~LKaqve~Lr~kl~maE~~v~R 343 (466)
+..+..+=...+++++.++++++.++.-++.
T Consensus 116 ~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~ 146 (341)
T 3fpp_A 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDT 146 (341)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555666666666555554443
No 286
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=21.51 E-value=6.9e+02 Score=27.21 Aligned_cols=47 Identities=11% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 281 KQAHLTELETQVSQLRVENS---------------SLLKRLTDISQKYNEAAVDNRVLKADV 327 (466)
Q Consensus 281 Kq~~LeELE~qV~~Le~ENs---------------~L~~ql~~L~q~~~~l~~EN~~LKaqv 327 (466)
+-..+++|+.++.+|+.|.. .|..++..++++...+...+..-+..+
T Consensus 399 ~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (854)
T 1qvr_A 399 APEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREIL 460 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777776666543 344555555555555554444433333
No 287
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.44 E-value=1.4e+02 Score=20.98 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 306 LTDISQKYNEAAVDNRVLKADVETLRA 332 (466)
Q Consensus 306 l~~L~q~~~~l~~EN~~LKaqve~Lr~ 332 (466)
+..+..+...+..+|..|..++..|+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555666666777777777776643
No 288
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=21.18 E-value=3e+02 Score=22.70 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012287 308 DISQKYNEAAVDNRVLKADVETL 330 (466)
Q Consensus 308 ~L~q~~~~l~~EN~~LKaqve~L 330 (466)
.+-+++..+..+=..+|+++.++
T Consensus 54 ~vA~~tyda~~~l~~ak~~L~~~ 76 (81)
T 3csx_A 54 ETAEKTYEIFRELDQLKKKLNIW 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444434444444444
No 289
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.03 E-value=1.5e+02 Score=22.99 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 315 EAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 315 ~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
.|..-|-.|-.+++.|+.++...|.=+.||
T Consensus 15 kLKq~n~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 15 RLKQMNVQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 290
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.96 E-value=2.9e+02 Score=28.58 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=50.9
Q ss_pred HHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 012287 268 LSNRESARRSRRRKQA-HLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVDN----------RVLKADVETLRAKVKM 336 (466)
Q Consensus 268 LsNRESARRSR~RKq~-~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~EN----------~~LKaqve~Lr~kl~m 336 (466)
..|.+.-+++-++|.. ...++-.++-.|-.+-..|..++..|+.+.+.+..+= ..|++++..|..+++.
T Consensus 8 r~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 87 (455)
T 2dq0_A 8 RENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGE 87 (455)
T ss_dssp HHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 3466666666555532 1023446777788888888888888888777766432 3567777777777777
Q ss_pred HHHHHHHHh
Q 012287 337 AEETVKRIT 345 (466)
Q Consensus 337 aE~~v~Rl~ 345 (466)
.|+-.+.+.
T Consensus 88 ~~~~~~~~~ 96 (455)
T 2dq0_A 88 LENEVEELK 96 (455)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666654
No 291
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=20.90 E-value=3.8e+02 Score=22.62 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 012287 321 RVLKADVETLRAKVKMAEETVKRIT 345 (466)
Q Consensus 321 ~~LKaqve~Lr~kl~maE~~v~Rl~ 345 (466)
-.||.+.+.|..-..|.-++..||.
T Consensus 46 y~iKkq~evl~Et~~mipd~~~Rl~ 70 (106)
T 1qsd_A 46 YDLKKQEEVLDDTKRLLPTLYEKIR 70 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555555555555555555555553
No 292
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.89 E-value=4.8e+02 Score=23.79 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 012287 322 VLKADVETLRAK 333 (466)
Q Consensus 322 ~LKaqve~Lr~k 333 (466)
.|-.++.+|+.+
T Consensus 117 aL~~Ei~~Lr~q 128 (175)
T 3lay_A 117 AVAKEMESLGQK 128 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 293
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.79 E-value=4.5e+02 Score=24.73 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 307 TDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 307 ~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
...+.++..+..+=..++++++.++.++..++..+++.
T Consensus 117 ~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~ 154 (341)
T 3fpp_A 117 DNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYT 154 (341)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Confidence 33334444444444555555665555555555444433
No 294
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.70 E-value=1.9e+02 Score=24.87 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 299 NSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAK 333 (466)
Q Consensus 299 Ns~L~~ql~~L~q~~~~l~~EN~~LKaqve~Lr~k 333 (466)
+..|.+++...+.+...+..+...|+..++.|+..
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 295
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.61 E-value=6.8e+02 Score=25.41 Aligned_cols=75 Identities=25% Similarity=0.276 Sum_probs=49.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 012287 269 SNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEAAVD--------NRVLKADVETLRAKVKMAEET 340 (466)
Q Consensus 269 sNRESARRSR~RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~q~~~~l~~E--------N~~LKaqve~Lr~kl~maE~~ 340 (466)
.|-+.-+++-++|...+ + -.++-.|-.+-..+..++..|+.+.+.+..+ -..|++++..|..+++..++-
T Consensus 9 ~~~~~~~~~~~~r~~~~-~-~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (421)
T 1ses_A 9 QEPEVFHRAIREKGVAL-D-LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEA 86 (421)
T ss_dssp HCHHHHHHHHHHHTCCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHhCCCc-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 46666665555544332 2 3567777777788888888887777766532 356777777777777777766
Q ss_pred HHHHh
Q 012287 341 VKRIT 345 (466)
Q Consensus 341 v~Rl~ 345 (466)
.+.+.
T Consensus 87 ~~~~~ 91 (421)
T 1ses_A 87 LREKE 91 (421)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 296
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.52 E-value=2.9e+02 Score=26.34 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 306 LTDISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRI 344 (466)
Q Consensus 306 l~~L~q~~~~l~~EN~~LKaqve~Lr~kl~maE~~v~Rl 344 (466)
+...+.++..+..+=..+++++..++.++..++...++.
T Consensus 117 ~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~ 155 (369)
T 4dk0_A 117 LNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYT 155 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344455566666666777888888888887777655444
No 297
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.46 E-value=6.9e+02 Score=26.25 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012287 280 RKQAHLTELETQVSQLRVENSSLLKRLTDIS-----QKYNEAAVDNRVLKADVETLRAKVKMAE 338 (466)
Q Consensus 280 RKq~~LeELE~qV~~Le~ENs~L~~ql~~L~-----q~~~~l~~EN~~LKaqve~Lr~kl~maE 338 (466)
.++..+.+++..|+++..+.+.+...+.+.. ..+..|...-..|+.+|..|+.++....
T Consensus 132 ~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 132 KTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444443322 2333444445567777777777765543
No 298
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=20.42 E-value=1.3e+02 Score=20.74 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012287 288 LETQVSQLRVENSSLLKRLTDI 309 (466)
Q Consensus 288 LE~qV~~Le~ENs~L~~ql~~L 309 (466)
||..+..|+.-.+.|.+++..|
T Consensus 4 lee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 299
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.29 E-value=88 Score=32.24 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012287 321 RVLKADVETLRAKVKMAEETVKRITGL 347 (466)
Q Consensus 321 ~~LKaqve~Lr~kl~maE~~v~Rl~~l 347 (466)
..|+.+...|+.+++...+-+++++.+
T Consensus 49 ~r~~~e~~~~~~~~~~~~~~i~~~~~~ 75 (434)
T 4b4t_M 49 QRLSHENNVMLEKIKDNKEKIKNNRQL 75 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 333333333333333333334444443
Done!