Query 012288
Match_columns 466
No_of_seqs 399 out of 1690
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 01:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 3.3E-49 7.1E-54 400.6 34.9 250 66-384 66-335 (365)
2 KOG0698 Serine/threonine prote 100.0 7.7E-49 1.7E-53 395.5 30.2 266 57-384 32-309 (330)
3 KOG0697 Protein phosphatase 1B 100.0 1.9E-47 4.1E-52 357.4 24.0 263 62-385 19-297 (379)
4 PTZ00224 protein phosphatase 2 100.0 5.3E-45 1.1E-49 371.1 29.6 240 66-384 23-276 (381)
5 PF00481 PP2C: Protein phospha 100.0 1.8E-46 3.8E-51 366.0 16.6 239 67-371 2-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 2.7E-43 5.9E-48 344.2 24.4 244 66-382 9-255 (262)
7 KOG0699 Serine/threonine prote 100.0 9.7E-40 2.1E-44 315.1 18.2 163 200-380 330-504 (542)
8 KOG0700 Protein phosphatase 2C 100.0 1.3E-38 2.8E-43 315.2 20.2 260 77-358 83-377 (390)
9 PRK14559 putative protein seri 100.0 9.1E-38 2E-42 334.5 27.9 246 66-384 376-640 (645)
10 cd00143 PP2Cc Serine/threonine 100.0 4.1E-37 8.8E-42 297.7 29.2 246 67-378 3-254 (254)
11 smart00332 PP2Cc Serine/threon 100.0 4.5E-36 9.8E-41 291.2 29.5 242 67-376 8-255 (255)
12 KOG1323 Serine/threonine phosp 100.0 5.4E-29 1.2E-33 238.7 21.2 273 92-381 142-489 (493)
13 KOG1379 Serine/threonine prote 99.9 4.1E-22 8.9E-27 191.9 18.0 214 77-378 89-330 (330)
14 KOG0618 Serine/threonine phosp 99.9 3.3E-21 7.2E-26 206.8 18.1 245 66-383 523-776 (1081)
15 PF13672 PP2C_2: Protein phosp 99.8 3E-20 6.6E-25 175.8 14.2 186 70-341 3-194 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 9.1E-17 2E-21 149.8 20.2 174 77-356 15-192 (193)
17 TIGR02865 spore_II_E stage II 99.6 3.1E-13 6.8E-18 150.1 22.3 194 73-378 561-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.4 6.3E-11 1.4E-15 110.1 21.4 123 200-379 60-193 (193)
19 COG2208 RsbU Serine phosphatas 98.3 0.00012 2.5E-09 75.5 22.3 125 200-379 231-366 (367)
20 PRK10693 response regulator of 28.0 5.2E+02 0.011 25.5 10.3 44 179-226 208-253 (303)
21 PF09436 DUF2016: Domain of un 26.3 38 0.00082 26.4 1.3 19 313-332 26-44 (72)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=3.3e-49 Score=400.56 Aligned_cols=250 Identities=30% Similarity=0.510 Sum_probs=211.2
Q ss_pred eeEEecccCCCCCCCccEEeeccCCC---------CCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCccccc
Q 012288 66 TACVYTQQGKKGINQDAMIVWENFSS---------SDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSFE 136 (466)
Q Consensus 66 ~~~~~S~~G~R~~NED~~~v~~~~~~---------~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~~ 136 (466)
.++.+|++|.|..|||++++..++.. .+..||||||||| |+.+|++|+++++..|.+....
T Consensus 66 ~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhG--G~~age~as~~l~~~i~~~~~~-------- 135 (365)
T PLN03145 66 RSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHG--GKHAADFACYHLPRFIVEDEDF-------- 135 (365)
T ss_pred EEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCC--CHHHHHHHHHHHHHHHHhhhcc--------
Confidence 35788999999999999988665421 2468999999999 9999999999999988753110
Q ss_pred ccCCCCcccccccccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhhCCCC-CccCCCceEEEEEEeCCeeE
Q 012288 137 NANGSTHSEETASLSMDEEGFETLDTEGDKLPEIYLPLKKSMLKSFKLMDKELKLHPAI-DCFCSGTTAVTLVKQGPDIV 215 (466)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~d~~l~~~~~~-~~~~sGTTav~~li~~~~l~ 215 (466)
...++++|.++|..+|+.+...... ....+|||++++++.++.+|
T Consensus 136 ----------------------------------~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~ 181 (365)
T PLN03145 136 ----------------------------------PREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLV 181 (365)
T ss_pred ----------------------------------chhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEE
Confidence 1245677888888888888654322 23459999999999999999
Q ss_pred EEEeccccEEEEEeCCCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCcccccccccccc
Q 012288 216 IGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCL 295 (466)
Q Consensus 216 vanVGDSRa~l~r~~~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~ 295 (466)
||||||||||++++++ +++||.||++..+.|+.||.+.||.|.. .|+ .|.+++||||||..+
T Consensus 182 vaNvGDSRayl~r~g~-----~~~LT~DH~~~~~~E~~RI~~~Gg~v~~-------g~v------~g~l~vTRalGD~~~ 243 (365)
T PLN03145 182 VANAGDCRAVLCRRGK-----AIEMSRDHKPMCSKERKRIEASGGYVYD-------GYL------NGQLNVARALGDWHM 243 (365)
T ss_pred EEecCCceEEEEcCCe-----EEEecCCCCCCCHHHHHHHHHcCCceec-------ceE------CCccccccccccccc
Confidence 9999999999999875 9999999999999999999999998853 233 678899999999988
Q ss_pred ccC------CcccccEEEEEEeCCCCeEEEEEcCCCCCCCCHHHHHHHHH----cCCCHHHHHHHHHHHHHHhccccCCC
Q 012288 296 KDF------GLISVPDIYYRRLTEKDEFIILATDGVWDVISNKEAVEIVA----SAPSQATAARALVDWAVRSWKLKYPT 365 (466)
Q Consensus 296 K~~------gv~~~Pdv~~~~L~~~D~flILaSDGlwD~ls~~ei~~iv~----~~~~~~~aA~~Lv~~A~~~w~~~~~~ 365 (466)
|.+ +++++||+..++|+++|.|||||||||||+|+++++++++. ...+++++|+.|++.|+.+
T Consensus 244 k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~r------- 316 (365)
T PLN03145 244 EGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKR------- 316 (365)
T ss_pred cccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------
Confidence 754 37899999999999999999999999999999999877664 3468999999999999999
Q ss_pred CCCCcEEEEEEEeCCCCCC
Q 012288 366 SKNDDCAVVCLFLEHSSAV 384 (466)
Q Consensus 366 g~~DNiTvIvv~l~~~~~~ 384 (466)
++.||||||||+|+..+..
T Consensus 317 gs~DNITvIVV~l~~~~~~ 335 (365)
T PLN03145 317 KSGDNLAVVVVCFQSQPPP 335 (365)
T ss_pred CCCCCEEEEEEEeecCCCc
Confidence 9999999999999875433
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-49 Score=395.46 Aligned_cols=266 Identities=36% Similarity=0.521 Sum_probs=230.7
Q ss_pred eeeecCCceeeEEecccCCCCCCCccEEeeccCC-----CC-CceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcC
Q 012288 57 RMVNNAASKTACVYTQQGKKGINQDAMIVWENFS-----SS-DTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASN 130 (466)
Q Consensus 57 ~~~~~~~~~~~~~~S~~G~R~~NED~~~v~~~~~-----~~-~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~ 130 (466)
+....+....++.++.+|+|..|||++.....+. .. +..||||||||| |+.+|+|++++|+..|.+++....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHG--G~~~A~~~~~~L~~~l~~~~~~~~ 109 (330)
T KOG0698|consen 32 KLSINESYRLGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHG--GDLAAKFAAKHLHKNLLEQLAFPK 109 (330)
T ss_pred cccccccccceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHHHhhhhccc
Confidence 3445566667788899999999999999887654 23 589999999999 999999999999999998765431
Q ss_pred CcccccccCCCCcccccccccccccccccccccCCCchhhhHHHHHHHHHHHH-HHHHHHhhCCCCCccCCCceEEEEEE
Q 012288 131 DQTSFENANGSTHSEETASLSMDEEGFETLDTEGDKLPEIYLPLKKSMLKSFK-LMDKELKLHPAIDCFCSGTTAVTLVK 209 (466)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~-~~d~~l~~~~~~~~~~sGTTav~~li 209 (466)
.. ..+++++.++|. .+|.++... ..+...+|||++++++
T Consensus 110 ------------------------------------~~---~~~~~a~~~~F~~~~D~~~~~~-~~~~~~~gstav~~vi 149 (330)
T KOG0698|consen 110 ------------------------------------DR---QDVKDALRRAFLTKTDSEFLEK-REDNRSGGSTAVVALI 149 (330)
T ss_pred ------------------------------------ch---HHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcceeeeeeE
Confidence 00 468899999999 699999875 2223567888888887
Q ss_pred eC-CeeEEEEeccccEEEEEeCCCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCccccc
Q 012288 210 QG-PDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMAR 288 (466)
Q Consensus 210 ~~-~~l~vanVGDSRa~l~r~~~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltR 288 (466)
.. .+|||||+|||||||+++++ ++++||.||+|..+.|+.||.++||+|..... ++|| +|+|+|||
T Consensus 150 ~~~~~l~vaN~GDSRaVl~~~~~----~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~---~~Rv------~G~LavsR 216 (330)
T KOG0698|consen 150 KKGRKLYVANVGDSRAVLSRKGG----VAVQLSVDHKPDREDERERIEAAGGRVSNWGG---VWRV------NGVLAVSR 216 (330)
T ss_pred ecCCEEEEEEcCCCcEEEecCCC----eeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCC---cceE------eceEEEee
Confidence 75 49999999999999998753 59999999999999999999999999987654 6788 78999999
Q ss_pred cccccccccCCcccccEEEEEEeCCCCeEEEEEcCCCCCCCCHHHHHHHHHc----CCCHHHHHHHHHHHHHHhccccCC
Q 012288 289 AFGDFCLKDFGLISVPDIYYRRLTEKDEFIILATDGVWDVISNKEAVEIVAS----APSQATAARALVDWAVRSWKLKYP 364 (466)
Q Consensus 289 alGd~~~K~~gv~~~Pdv~~~~L~~~D~flILaSDGlwD~ls~~ei~~iv~~----~~~~~~aA~~Lv~~A~~~w~~~~~ 364 (466)
||||..+|.++++++|+++...+...|+|||||||||||++++||++++|+. ..++..+++.|...|..+
T Consensus 217 a~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~~------ 290 (330)
T KOG0698|consen 217 AFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALSR------ 290 (330)
T ss_pred ecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhhc------
Confidence 9999999977799999999999999999999999999999999999999998 568899999999999999
Q ss_pred CCCCCcEEEEEEEeCCCCCC
Q 012288 365 TSKNDDCAVVCLFLEHSSAV 384 (466)
Q Consensus 365 ~g~~DNiTvIvv~l~~~~~~ 384 (466)
++.||||||||+|...+..
T Consensus 291 -~s~DnitvvvV~l~~~~~~ 309 (330)
T KOG0698|consen 291 -GSKDNITVVVVRLKSSPKS 309 (330)
T ss_pred -CCCCCeEEEEEEecCcccc
Confidence 9999999999999986543
No 3
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-47 Score=357.38 Aligned_cols=263 Identities=31% Similarity=0.427 Sum_probs=226.8
Q ss_pred CCceeeEEecccCCCCCCCccEEeeccCCC--CCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcccccccC
Q 012288 62 AASKTACVYTQQGKKGINQDAMIVWENFSS--SDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSFENAN 139 (466)
Q Consensus 62 ~~~~~~~~~S~~G~R~~NED~~~v~~~~~~--~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~~~~~ 139 (466)
|.--.|++.|+||||-.|||++.....+.. .++.||+|||||. |+.+|.+++++|...|...-.....
T Consensus 19 GNglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHA--Gs~va~~c~~hLlehi~sse~F~~~-------- 88 (379)
T KOG0697|consen 19 GNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHA--GSQVANHCAEHLLEHIISSEEFRGM-------- 88 (379)
T ss_pred CCceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCcc--chHHHHHHHHHHHHHhhhhHHHhhh--------
Confidence 344578999999999999999988766655 8999999999999 9999999999999977654222100
Q ss_pred CCCcccccccccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhhCCCCC--ccCCCceEEEEEEeCCeeEEE
Q 012288 140 GSTHSEETASLSMDEEGFETLDTEGDKLPEIYLPLKKSMLKSFKLMDKELKLHPAID--CFCSGTTAVTLVKQGPDIVIG 217 (466)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~d~~l~~~~~~~--~~~sGTTav~~li~~~~l~va 217 (466)
......+.++..++..|.++|..++...... ..++||||+++++...++|++
T Consensus 89 --------------------------~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~ 142 (379)
T KOG0697|consen 89 --------------------------TKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYII 142 (379)
T ss_pred --------------------------ccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEE
Confidence 0112345788899999999998877654322 345999999999999999999
Q ss_pred EeccccEEEEEeCCCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCcccccccccccccc
Q 012288 218 NVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKD 297 (466)
Q Consensus 218 nVGDSRa~l~r~~~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~K~ 297 (466)
|+|||||+|+|++. .+.-|+||+|.+|.|++||+.+||.|.. .|| +|.||++|||||++||.
T Consensus 143 NcGDSRavl~rng~-----~~f~TqDHKP~~p~EkeRIqnAGGSVMI-------qRv------NGsLAVSRAlGDydyK~ 204 (379)
T KOG0697|consen 143 NCGDSRAVLCRNGE-----VVFSTQDHKPYLPKEKERIQNAGGSVMI-------QRV------NGSLAVSRALGDYDYKN 204 (379)
T ss_pred ecCcchhheecCCc-----eEEeccCCCCCChHHHHHHhcCCCeEEE-------EEe------cceeeeehhccCccccc
Confidence 99999999999986 8899999999999999999999999976 677 99999999999999996
Q ss_pred CC--------cccccEEEEEEeCCCCeEEEEEcCCCCCCCCHHHHHHHHHcC----CCHHHHHHHHHHHHHHhccccCCC
Q 012288 298 FG--------LISVPDIYYRRLTEKDEFIILATDGVWDVISNKEAVEIVASA----PSQATAARALVDWAVRSWKLKYPT 365 (466)
Q Consensus 298 ~g--------v~~~Pdv~~~~L~~~D~flILaSDGlwD~ls~~ei~~iv~~~----~~~~~aA~~Lv~~A~~~w~~~~~~ 365 (466)
.+ ++.+|+|....-...|+|||||+|||||+++++|++++|... .|+.++|..+++.++.+
T Consensus 205 v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhK------- 277 (379)
T KOG0697|consen 205 VPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHK------- 277 (379)
T ss_pred CCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhc-------
Confidence 43 889999999988888889999999999999999999999874 58899999999999999
Q ss_pred CCCCcEEEEEEEeCCCCCCC
Q 012288 366 SKNDDCAVVCLFLEHSSAVN 385 (466)
Q Consensus 366 g~~DNiTvIvv~l~~~~~~~ 385 (466)
|+.||+|+|+|-|...|..+
T Consensus 278 GSRDNMsivlvcfp~APkv~ 297 (379)
T KOG0697|consen 278 GSRDNMSIVLVCFPGAPKVS 297 (379)
T ss_pred cCccCceEEEEecCCCCCCC
Confidence 99999999999998776554
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=5.3e-45 Score=371.05 Aligned_cols=240 Identities=31% Similarity=0.427 Sum_probs=200.9
Q ss_pred eeEEecccCCCCCCCccEEeeccCCCCCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCccc
Q 012288 66 TACVYTQQGKKGINQDAMIVWENFSSSDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSFENANGSTHSE 145 (466)
Q Consensus 66 ~~~~~S~~G~R~~NED~~~v~~~~~~~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 145 (466)
.++..|++|+|..|||++++..+ .+..||||||||| |..+|+++++.|+..|......
T Consensus 23 ~~g~~s~~G~R~~nED~~~v~~~---~~~~lfgVfDGHg--G~~~S~~~~~~l~~~l~~~~~~----------------- 80 (381)
T PTZ00224 23 RCASACVNGYRESMEDAHLLYLT---DDWGFFGVFDGHV--NDECSQYLARAWPQALEKEPEP----------------- 80 (381)
T ss_pred EEEEEeCCCCCCCCCCeeEeccC---CCceEEEEEeCCC--cHHHHHHHHHHHHHHHHhcccc-----------------
Confidence 46778999999999999887542 3557999999999 9999999999998766432100
Q ss_pred ccccccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhhCCCCCccCCCceEEEEEEe-CCeeEEEEeccccE
Q 012288 146 ETASLSMDEEGFETLDTEGDKLPEIYLPLKKSMLKSFKLMDKELKLHPAIDCFCSGTTAVTLVKQ-GPDIVIGNVGDSRA 224 (466)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~d~~l~~~~~~~~~~sGTTav~~li~-~~~l~vanVGDSRa 224 (466)
. ..+.+.+++..+|+++.... ..+|||++++++. +.++|||||||||+
T Consensus 81 -----------------------~----~~~~l~~a~~~~d~~i~~~~----~~~GsTatv~lI~~~~~l~vaNVGDSRa 129 (381)
T PTZ00224 81 -----------------------M----TDERMEELCLEIDEEWMDSG----REGGSTGTFCVIMKDVHLQVGNVGDSRV 129 (381)
T ss_pred -----------------------c----cHHHHHHHHHHHHHHHHhcc----cCCCCeEEEEEEEECCEEEEEEcccceE
Confidence 0 11346678888888887554 2459999988775 67999999999999
Q ss_pred EEEEeCCCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCccccccccccccccCC-----
Q 012288 225 VLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFG----- 299 (466)
Q Consensus 225 ~l~r~~~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~K~~g----- 299 (466)
|+++.++ +++||.||++.++.|+.||.+.||.+.. .|| .|.+++||+|||..+|..+
T Consensus 130 yl~r~g~-----~~~LT~DH~~~~~~E~~RI~~~gg~v~~-------~Rv------~G~l~vTRalGd~~~K~~~~~~~~ 191 (381)
T PTZ00224 130 LVCRDGK-----LVFATEDHKPNNPGERQRIEACGGRVVS-------NRV------DGDLAVSRAFGDRSFKVKGTGDYL 191 (381)
T ss_pred EEEECCE-----EEEcccCCCCCCHHHHhHHHHccCEecc-------ccc------cCceeeecccCCcccccccccccc
Confidence 9999775 9999999999999999999999998743 244 7889999999998876543
Q ss_pred ---cccccEEEEEEeCCCCeEEEEEcCCCCC-CCCHHHHHHHHHc----CCCHHHHHHHHHHHHHHhccccCCCCCCCcE
Q 012288 300 ---LISVPDIYYRRLTEKDEFIILATDGVWD-VISNKEAVEIVAS----APSQATAARALVDWAVRSWKLKYPTSKNDDC 371 (466)
Q Consensus 300 ---v~~~Pdv~~~~L~~~D~flILaSDGlwD-~ls~~ei~~iv~~----~~~~~~aA~~Lv~~A~~~w~~~~~~g~~DNi 371 (466)
++++||+..+.+.++| ||||||||||| +|+++||++++.. ..+++++|+.|++.|+.+ |+.|||
T Consensus 192 ~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~r-------Gs~DNI 263 (381)
T PTZ00224 192 EQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRR-------GSKDNI 263 (381)
T ss_pred cCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------CCCCCE
Confidence 6789999999999998 99999999999 8999999999873 468999999999999999 999999
Q ss_pred EEEEEEeCCCCCC
Q 012288 372 AVVCLFLEHSSAV 384 (466)
Q Consensus 372 TvIvv~l~~~~~~ 384 (466)
|||||+|......
T Consensus 264 TvIvV~~~~~~~~ 276 (381)
T PTZ00224 264 SCLIVQLKDGASY 276 (381)
T ss_pred EEEEEEeeCCCCh
Confidence 9999999986544
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.8e-46 Score=365.98 Aligned_cols=239 Identities=37% Similarity=0.543 Sum_probs=199.2
Q ss_pred eEEecccCCCCCCCccEEeeccCC---C-CCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCC
Q 012288 67 ACVYTQQGKKGINQDAMIVWENFS---S-SDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSFENANGST 142 (466)
Q Consensus 67 ~~~~S~~G~R~~NED~~~v~~~~~---~-~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~~~~~~~~ 142 (466)
+++.+.+|+|..|||++++..++. . .+..+|||||||| |+.+++++++.++..|........
T Consensus 2 ~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhg--G~~~a~~~~~~l~~~l~~~~~~~~------------ 67 (254)
T PF00481_consen 2 YGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHG--GSEAAEYASQNLPEFLKENLSFND------------ 67 (254)
T ss_dssp EEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEES--SSHHHHHHHHHHHHHHHHHHHHHT------------
T ss_pred cCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCC--ChhhHHHHHHHHHHHHHhhccccc------------
Confidence 466788999999999999998774 2 6889999999999 999999999999988887765432
Q ss_pred cccccccccccccccccccccCCCchhhhHHHHHHHHHHHHH-HHHHHhhCCCC-CccCCCceEEEEEEeCCeeEEEEec
Q 012288 143 HSEETASLSMDEEGFETLDTEGDKLPEIYLPLKKSMLKSFKL-MDKELKLHPAI-DCFCSGTTAVTLVKQGPDIVIGNVG 220 (466)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~-~d~~l~~~~~~-~~~~sGTTav~~li~~~~l~vanVG 220 (466)
...+.+++..+|.. ++..+...... ....+|||++++++.+++||+||||
T Consensus 68 ----------------------------~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvG 119 (254)
T PF00481_consen 68 ----------------------------GNDIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVG 119 (254)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEES
T ss_pred ----------------------------ccchhhcccceeeecccccccccccccccccccccccccccccceeEEEeee
Confidence 01567778888888 78777652110 3467899999999999999999999
Q ss_pred cccEEEEEeCCCCcEEEE-EeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCcccccccccccccc--
Q 012288 221 DSRAVLATREKDNSLVAV-QLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKD-- 297 (466)
Q Consensus 221 DSRa~l~r~~~~~~~~~~-qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~K~-- 297 (466)
||||||++.+. .. +||.||+|..+.|+.||.+.||.+.. ..|+ .+.|++||+|||..+|.
T Consensus 120 DSravl~~~~~-----~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~------~~rv------~g~l~~sRalGd~~~k~~~ 182 (254)
T PF00481_consen 120 DSRAVLCRNGG-----IIKQLTRDHKPSNPDERERIRKAGGRVSE------NGRV------NGVLAVSRALGDFDLKPPG 182 (254)
T ss_dssp S-EEEEEETTE-----EEEESS---STTSHHHHHHHHHTT-GEEE------TEEE------TTTBSSSB-EE-GGGTTCT
T ss_pred eeeeeeeeccc-----cccccccccccchhhccceeecccccccc------chhh------hhccccccccccccccccc
Confidence 99999999986 55 99999999999999999999999874 3566 78899999999999999
Q ss_pred -CCcccccEEEEEEeCCCCeEEEEEcCCCCCCCCHHHHHHHHHcCCC----HHHHHHHHHHHHHHhccccCCCCCCCcE
Q 012288 298 -FGLISVPDIYYRRLTEKDEFIILATDGVWDVISNKEAVEIVASAPS----QATAARALVDWAVRSWKLKYPTSKNDDC 371 (466)
Q Consensus 298 -~gv~~~Pdv~~~~L~~~D~flILaSDGlwD~ls~~ei~~iv~~~~~----~~~aA~~Lv~~A~~~w~~~~~~g~~DNi 371 (466)
.+++++|+|..++|+++|+|||||||||||+|+++|+++++....+ ++.+|+.|++.|+.+ |+.|||
T Consensus 183 ~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~-------gs~DNi 254 (254)
T PF00481_consen 183 KPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIAR-------GSKDNI 254 (254)
T ss_dssp SSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHT-------THHSHE
T ss_pred cceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-------CCCCCC
Confidence 6799999999999999999999999999999999999999988755 899999999999999 999997
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-43 Score=344.19 Aligned_cols=244 Identities=27% Similarity=0.348 Sum_probs=203.6
Q ss_pred eeEEecccCC-CCCCCccEEeeccCCCCCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCcc
Q 012288 66 TACVYTQQGK-KGINQDAMIVWENFSSSDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSFENANGSTHS 144 (466)
Q Consensus 66 ~~~~~S~~G~-R~~NED~~~v~~~~~~~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 144 (466)
.++..|+.|. |.+|||++++..+.......||+|||||| ||.++++|++.++..|.+.+.......
T Consensus 9 ~~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~G--Gh~~ge~aS~~~v~~l~~~~~~~~~~~----------- 75 (262)
T COG0631 9 KVAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMG--GHAAGEVASKLAVEALARLFDETNFNS----------- 75 (262)
T ss_pred eeeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCcc--chhHHHHHHHHHHHHHHHHHHhccccc-----------
Confidence 4556677887 88999999998754431167999999999 999999999999999999987653111
Q ss_pred cccccccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhhCCC--CCccCCCceEEEEEEeCCeeEEEEeccc
Q 012288 145 EETASLSMDEEGFETLDTEGDKLPEIYLPLKKSMLKSFKLMDKELKLHPA--IDCFCSGTTAVTLVKQGPDIVIGNVGDS 222 (466)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~d~~l~~~~~--~~~~~sGTTav~~li~~~~l~vanVGDS 222 (466)
..+.+.+.+.+++..++.++..... .+..+||||++++++.++++|+||||||
T Consensus 76 -------------------------~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDS 130 (262)
T COG0631 76 -------------------------LNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDS 130 (262)
T ss_pred -------------------------cchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCC
Confidence 0011567777777777777776653 4578999999999999999999999999
Q ss_pred cEEEEEeCCCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCccccccccccccccCCccc
Q 012288 223 RAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLIS 302 (466)
Q Consensus 223 Ra~l~r~~~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~K~~gv~~ 302 (466)
|+||+|++. ++|||.||++.+..++.++...++.... ....++|||||+... .
T Consensus 131 R~yl~~~~~-----~~~lT~DH~~~~~~~~~~~~~~~~~~~~----------------~~~~~ltralG~~~~------~ 183 (262)
T COG0631 131 RAYLLRDGE-----LKQLTEDHSLVNRLEQRGIITPEEARSH----------------PRRNALTRALGDFDL------L 183 (262)
T ss_pred eEEEEcCCc-----eEEeccCCcHHHHHHHhcCCCHHHHHhC----------------ccchhhhhhcCCCcc------c
Confidence 999999986 9999999999998888886665543221 111279999999843 7
Q ss_pred ccEEEEEEeCCCCeEEEEEcCCCCCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccCCCCCCCcEEEEEEEeCCCC
Q 012288 303 VPDIYYRRLTEKDEFIILATDGVWDVISNKEAVEIVASAPSQATAARALVDWAVRSWKLKYPTSKNDDCAVVCLFLEHSS 382 (466)
Q Consensus 303 ~Pdv~~~~L~~~D~flILaSDGlwD~ls~~ei~~iv~~~~~~~~aA~~Lv~~A~~~w~~~~~~g~~DNiTvIvv~l~~~~ 382 (466)
+|++..+.+.++| |||||||||||.+++++|+++|....+++++|+.|++.|+.+ ++.||+|+|+|.+....
T Consensus 184 ~p~~~~~~~~~~d-~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li~~a~~~-------g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 184 EPDITELELEPGD-FLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLIELALEG-------GGPDNITVVLVRLNGEG 255 (262)
T ss_pred ceeEEEEEcCCCC-EEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------CCCCceEEEEEEeeccc
Confidence 9999999999997 999999999999999999999998889999999999999998 99999999999998654
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-40 Score=315.08 Aligned_cols=163 Identities=35% Similarity=0.538 Sum_probs=144.4
Q ss_pred CCceEEEEEEeCCeeEEEEeccccEEEEEeCCCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCC
Q 012288 200 SGTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNN 279 (466)
Q Consensus 200 sGTTav~~li~~~~l~vanVGDSRa~l~r~~~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~ 279 (466)
+||||||+|+.+.+|||||.||||+|++|.++ ++-|+.||+|....|..||+.+||+|.-. .||
T Consensus 330 SGtTAvVcLv~g~~liVANAGDSRcV~sr~Gk-----AvdmS~DHKPEDevE~~RI~~AGG~vtlD------GRV----- 393 (542)
T KOG0699|consen 330 SGTTAVVCLVGGDKLIVANAGDSRCVLSRNGK-----AVDMSVDHKPEDEVETNRIHAAGGQVTLD------GRV----- 393 (542)
T ss_pred CCceEEEEEecCceEEEecCCCcceEEecCCc-----eeecccCCCcccHHHHHHHHhcCCeEeec------cee-----
Confidence 79999999999999999999999999999997 99999999999999999999999998631 455
Q ss_pred CCCCccccccccccccccCC--------cccccEEEEEEeCCCCeEEEEEcCCCCCCCCHHHHHHHHHc----CCCHHHH
Q 012288 280 DSPGLAMARAFGDFCLKDFG--------LISVPDIYYRRLTEKDEFIILATDGVWDVISNKEAVEIVAS----APSQATA 347 (466)
Q Consensus 280 ~~~~LaltRalGd~~~K~~g--------v~~~Pdv~~~~L~~~D~flILaSDGlwD~ls~~ei~~iv~~----~~~~~~a 347 (466)
+|||.|+|||||+.||..- +++-|||....|++.|+|+|||+||||++|+.++++++|+. ...+.++
T Consensus 394 -NGGLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~i 472 (542)
T KOG0699|consen 394 -NGGLNLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEI 472 (542)
T ss_pred -cCccchhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHH
Confidence 9999999999999999642 78899999999999999999999999999999999999875 3567888
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEEEEEeCC
Q 012288 348 ARALVDWAVRSWKLKYPTSKNDDCAVVCLFLEH 380 (466)
Q Consensus 348 A~~Lv~~A~~~w~~~~~~g~~DNiTvIvv~l~~ 380 (466)
+..|++.++.--... .+.+.||+||||+.|+.
T Consensus 473 ceeL~D~CLAp~T~G-DGTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 473 CEELCDACLAPSTDG-DGTGCDNMTVIITTFKR 504 (542)
T ss_pred HHHHHHhhcCCCCCC-CCcCCCcceEEEEEecc
Confidence 999999888652222 23467999999999984
No 8
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-38 Score=315.19 Aligned_cols=260 Identities=28% Similarity=0.326 Sum_probs=193.7
Q ss_pred CCCCccEEeeccCCCCCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCcccccccccccccc
Q 012288 77 GINQDAMIVWENFSSSDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSFENANGSTHSEETASLSMDEEG 156 (466)
Q Consensus 77 ~~NED~~~v~~~~~~~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (466)
..-||.+-+..... .++.||||||||| |..++++++++|..++..++....-+... ........ .....+...+
T Consensus 83 ~~~edrv~~~~s~~-~~~~fvGIyDGhg--Gp~as~~v~~~L~~~v~~~L~~~~~~~~~-~f~~e~~~--~~~~~~~~~~ 156 (390)
T KOG0700|consen 83 KAEEDRVSVAVSEE-NGWLFVGIYDGHG--GPDASRFLSDHLYPYVARELQGLLWQDEE-RFPSEYKS--EELEHLLVYW 156 (390)
T ss_pred CcccCcceeeeecc-CCeEEEEEecCCC--CccHHHHHHHHHHHHHHHHhhhhhhhhcc-cccccccc--chhhhhhhhh
Confidence 34467666554322 6899999999999 99999999999999998777654211100 00000000 0000111111
Q ss_pred cccccccCCCchhhhHHHHHHHHHHHHHHHHHHhhCC------CCCccCCCceEEEEEEeCCeeEEEEeccccEEEEEeC
Q 012288 157 FETLDTEGDKLPEIYLPLKKSMLKSFKLMDKELKLHP------AIDCFCSGTTAVTLVKQGPDIVIGNVGDSRAVLATRE 230 (466)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~l~~a~~~~d~~l~~~~------~~~~~~sGTTav~~li~~~~l~vanVGDSRa~l~r~~ 230 (466)
... + .....-..+.++|.+||.+++..+.... ......+|+|++++++.+..|||||+|||||||+...
T Consensus 157 ~~~-~----~~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~ 231 (390)
T KOG0700|consen 157 KQL-S----SADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVE 231 (390)
T ss_pred hcc-c----ccCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceec
Confidence 111 0 0001135678899999999999885431 2235779999999999999999999999999999998
Q ss_pred CCCc-EEEEEeeccCCCCCHHHHHHHHhcCCe----EEeccCCCcceEEeccCCCCCCccccccccccccccC-------
Q 012288 231 KDNS-LVAVQLTVDLKPDLPREAARIQQCKGR----VFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDF------- 298 (466)
Q Consensus 231 ~~~~-~~~~qLT~DH~~~~~~E~~Ri~~~gg~----v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~K~~------- 298 (466)
.++. |.++|||.||+.++.+|+.||+..+-. |.. +-+|| .|.|.+||||||..||..
T Consensus 232 ~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~-----~~~Rv------kG~L~vsRAfGd~~lK~~~~n~e~l 300 (390)
T KOG0700|consen 232 NNGSWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVN-----KHWRV------KGILQVSRAFGDGYLKWPEFNQEPL 300 (390)
T ss_pred CCCCeEEEEecChhhccccHHHHHHHHHhCCCCcceEee-----cccee------eEEEEeeeeccceeecchhhccchh
Confidence 8888 699999999999999999999987531 100 01355 899999999999999952
Q ss_pred -------------CcccccEEEEEEeCCCCeEEEEEcCCCCCCCCHHHHHHHHHcCC----CHHHHHHHHHHHHHHh
Q 012288 299 -------------GLISVPDIYYRRLTEKDEFIILATDGVWDVISNKEAVEIVASAP----SQATAARALVDWAVRS 358 (466)
Q Consensus 299 -------------gv~~~Pdv~~~~L~~~D~flILaSDGlwD~ls~~ei~~iv~~~~----~~~~aA~~Lv~~A~~~ 358 (466)
-++++|.|++++|++.|+|||||||||||+|+++|++.+|.... -.+.+|+.||+.|+.+
T Consensus 301 ~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~ 377 (390)
T KOG0700|consen 301 LEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGR 377 (390)
T ss_pred HhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhh
Confidence 18999999999999999999999999999999999999998842 2367999999999977
No 9
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=9.1e-38 Score=334.54 Aligned_cols=246 Identities=20% Similarity=0.248 Sum_probs=181.7
Q ss_pred eeEEecccCC-CCCCCccEEeeccCC----C-----CCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcccc
Q 012288 66 TACVYTQQGK-KGINQDAMIVWENFS----S-----SDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSF 135 (466)
Q Consensus 66 ~~~~~S~~G~-R~~NED~~~v~~~~~----~-----~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~ 135 (466)
.++.+|++|. |++|||++.+..++. . ....||+|||||| ||.+|++|++.++..|.+.+......
T Consensus 376 ~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmG--Gh~~GevAS~lAv~~L~~~~~~~~~~--- 450 (645)
T PRK14559 376 EDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMG--GHAAGEVASALAVETLQQYFQQHWQD--- 450 (645)
T ss_pred EEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCC--CchhHHHHHHHHHHHHHHHHHhhhcc---
Confidence 4577899997 999999998765321 0 2457999999999 99999888888888887766432100
Q ss_pred cccCCCCcccccccccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhhC----CCCCccCCCceEEEEEEeC
Q 012288 136 ENANGSTHSEETASLSMDEEGFETLDTEGDKLPEIYLPLKKSMLKSFKLMDKELKLH----PAIDCFCSGTTAVTLVKQG 211 (466)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~d~~l~~~----~~~~~~~sGTTav~~li~~ 211 (466)
.. ..++.+.+++..+|+++... ......+||||++++++.+
T Consensus 451 ------------------------------~~-----~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~ 495 (645)
T PRK14559 451 ------------------------------EL-----PDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQD 495 (645)
T ss_pred ------------------------------cc-----cHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEEC
Confidence 00 11244555666666666543 2223557999999999999
Q ss_pred CeeEEEEeccccEEEEEeCCCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCcccccccc
Q 012288 212 PDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFG 291 (466)
Q Consensus 212 ~~l~vanVGDSRa~l~r~~~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalG 291 (466)
+++|++||||||+|++++++ .++|||+||++... +.+.| +.. ... ....+..++|||||
T Consensus 496 ~~l~ianVGDSRaYli~r~g----~l~QLT~DHs~~~~-----lv~~G--i~~-----~~a-----~~~p~~~~LTrALG 554 (645)
T PRK14559 496 TQVAVAHVGDSRLYRVTRKG----GLEQLTVDHEVGQR-----EIQRG--VEP-----QIA-----YARPDAYQLTQALG 554 (645)
T ss_pred CEEEEEEecCceEEEEecCC----eEEEeCCCCCHHHH-----HHHhC--CCH-----HHH-----hcCcccceeeeccC
Confidence 99999999999999996542 39999999987532 22323 110 000 00123567999999
Q ss_pred ccccccCCcccccEEEEEEeCCCCeEEEEEcCCCCC--CCCH---HHHHHHHHcCCCHHHHHHHHHHHHHHhccccCCCC
Q 012288 292 DFCLKDFGLISVPDIYYRRLTEKDEFIILATDGVWD--VISN---KEAVEIVASAPSQATAARALVDWAVRSWKLKYPTS 366 (466)
Q Consensus 292 d~~~K~~gv~~~Pdv~~~~L~~~D~flILaSDGlwD--~ls~---~ei~~iv~~~~~~~~aA~~Lv~~A~~~w~~~~~~g 366 (466)
+...+. .+|++..+.+.++| +|||||||||| .+.. +++..++....+++++|++|++.|+.+ |
T Consensus 555 ~~~~~~----l~Pdi~~~~L~~gD-~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~~-------g 622 (645)
T PRK14559 555 PRDNSA----IQPDIQFLEIEEDT-LLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQY-------N 622 (645)
T ss_pred CCCCCc----ccceEEEEEcCCCC-EEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------C
Confidence 975543 48999999999988 99999999999 4554 456777877788999999999999999 9
Q ss_pred CCCcEEEEEEEeCCCCCC
Q 012288 367 KNDDCAVVCLFLEHSSAV 384 (466)
Q Consensus 367 ~~DNiTvIvv~l~~~~~~ 384 (466)
++||||||||++...+..
T Consensus 623 g~DNITvIvV~l~~~p~~ 640 (645)
T PRK14559 623 GHDNITAILVRLKVRPQL 640 (645)
T ss_pred CCCcEEEEEEEeccCCCC
Confidence 999999999999877654
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=4.1e-37 Score=297.68 Aligned_cols=246 Identities=38% Similarity=0.522 Sum_probs=207.6
Q ss_pred eEEecccCCCCCCCccEEeeccCCCCCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCcccc
Q 012288 67 ACVYTQQGKKGINQDAMIVWENFSSSDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSFENANGSTHSEE 146 (466)
Q Consensus 67 ~~~~S~~G~R~~NED~~~v~~~~~~~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 146 (466)
++..+.+|.|..|||++++.......+..+|+|||||| |+..++++++.++..|.+.+.....
T Consensus 3 ~~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~G--g~~~~~~as~~~~~~l~~~~~~~~~--------------- 65 (254)
T cd00143 3 AGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHG--GHAAGEFASKLLVEELLEELEETLT--------------- 65 (254)
T ss_pred eeeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCC--hHHHHHHHHHHHHHHHHHHHhhccc---------------
Confidence 45667788899999999987643212678999999999 9999999999999999887754310
Q ss_pred cccccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhhCCCC--CccCCCceEEEEEEeCCeeEEEEeccccE
Q 012288 147 TASLSMDEEGFETLDTEGDKLPEIYLPLKKSMLKSFKLMDKELKLHPAI--DCFCSGTTAVTLVKQGPDIVIGNVGDSRA 224 (466)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~d~~l~~~~~~--~~~~sGTTav~~li~~~~l~vanVGDSRa 224 (466)
.....+...+.++|..+++++...... ....+|||++++++.++.++++|+||||+
T Consensus 66 ----------------------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~ 123 (254)
T cd00143 66 ----------------------LSEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRA 123 (254)
T ss_pred ----------------------cchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEE
Confidence 112456677888888888888765432 35678999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCccccccccccccccCCccccc
Q 012288 225 VLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVP 304 (466)
Q Consensus 225 ~l~r~~~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~K~~gv~~~P 304 (466)
|+++++. ++++|.||++..+.|..||...++.+.. ....+...+||+||+..+|.. +..+|
T Consensus 124 ~~~~~~~-----~~~lt~dh~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~t~~lG~~~~~~~-~~~~~ 184 (254)
T cd00143 124 VLCRNGE-----AVQLTKDHKPVNEEERERIEKAGGRVSN-------------GRVPGVLAVTRALGDFDLKPG-VSAEP 184 (254)
T ss_pred EEEcCCc-----eeEcCCCCCCcChHHHHHHHHcCCcEEe-------------CEEcCceeeccccCCccccCC-EEcCC
Confidence 9999986 9999999999989999999999986421 011455679999999988854 78899
Q ss_pred EEEEEEe-CCCCeEEEEEcCCCCCCCCHHHHHHHHHcCC---CHHHHHHHHHHHHHHhccccCCCCCCCcEEEEEEEe
Q 012288 305 DIYYRRL-TEKDEFIILATDGVWDVISNKEAVEIVASAP---SQATAARALVDWAVRSWKLKYPTSKNDDCAVVCLFL 378 (466)
Q Consensus 305 dv~~~~L-~~~D~flILaSDGlwD~ls~~ei~~iv~~~~---~~~~aA~~Lv~~A~~~w~~~~~~g~~DNiTvIvv~l 378 (466)
++..+.+ .++| +||||||||||++++++|.+++.... +++++|+.|++.|..+ ++.||+|+|+++|
T Consensus 185 ~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l~~~a~~~-------~~~Dn~t~i~~~~ 254 (254)
T cd00143 185 DVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDLALRR-------GSHDNITVVVVRL 254 (254)
T ss_pred eEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHHHHHHHhC-------CCCCCEEEEEEeC
Confidence 9999999 8888 99999999999999999999999877 7999999999999999 8999999999975
No 11
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=4.5e-36 Score=291.21 Aligned_cols=242 Identities=37% Similarity=0.540 Sum_probs=202.1
Q ss_pred eEEecccCCCCCCCccEEeeccCCCCCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCcccc
Q 012288 67 ACVYTQQGKKGINQDAMIVWENFSSSDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSFENANGSTHSEE 146 (466)
Q Consensus 67 ~~~~S~~G~R~~NED~~~v~~~~~~~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 146 (466)
++..+.+|.|..|||++++..++. .+..+|+|||||| |+.+|+++++.+...|........
T Consensus 8 ~~~~~~~~~r~~neD~~~~~~~~~-~~~~~~~v~DG~g--g~~~~~~~~~~~~~~~~~~~~~~~---------------- 68 (255)
T smart00332 8 YGLSSMQGVRKPMEDAHVITPDLS-DSGAFFGVFDGHG--GSEAAKFLSKNLPEILAEELIKHK---------------- 68 (255)
T ss_pred EEEecCCCCCCCCcceEEEeccCC-CCeEEEEEEeCCC--cHHHHHHHHHHHHHHHHHhHhhcc----------------
Confidence 344567888999999999876532 4788999999999 999999999999988776543221
Q ss_pred cccccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhhCCCC--CccCCCceEEEEEEeCCeeEEEEeccccE
Q 012288 147 TASLSMDEEGFETLDTEGDKLPEIYLPLKKSMLKSFKLMDKELKLHPAI--DCFCSGTTAVTLVKQGPDIVIGNVGDSRA 224 (466)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~d~~l~~~~~~--~~~~sGTTav~~li~~~~l~vanVGDSRa 224 (466)
.....+.+.+.+++..++.++...... ....+|||++++++.++.+|++|+||||+
T Consensus 69 ----------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~ 126 (255)
T smart00332 69 ----------------------DELEDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRA 126 (255)
T ss_pred ----------------------cchhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceE
Confidence 111346667778888888887665432 24678999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCccccccccccccccCCccccc
Q 012288 225 VLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVP 304 (466)
Q Consensus 225 ~l~r~~~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~K~~gv~~~P 304 (466)
|+++.++ +.+||.||++....|..||.+.++.+... + ..+.+.+||++|+..+|.. ++.+|
T Consensus 127 y~~~~~~-----~~~lt~dh~~~~~~~~~~i~~~~~~~~~~-------~------~~~~~~lt~~~g~~~~~~~-i~~~p 187 (255)
T smart00332 127 VLCRNGK-----AVQLTEDHKPSNEDERARIEAAGGFVING-------R------VNGVLALSRAIGDFFLKPY-VSAEP 187 (255)
T ss_pred EEEeCCc-----eeEcCCCCCCcCHHHHHHHHHcCCEEECC-------e------ECCeEecccccCCHhhcCC-eEeee
Confidence 9999875 89999999999999999999999876431 1 1445679999999988866 88999
Q ss_pred EEEEEEe-CCCCeEEEEEcCCCCCCCCHHHHHHHHHcCC---CHHHHHHHHHHHHHHhccccCCCCCCCcEEEEEE
Q 012288 305 DIYYRRL-TEKDEFIILATDGVWDVISNKEAVEIVASAP---SQATAARALVDWAVRSWKLKYPTSKNDDCAVVCL 376 (466)
Q Consensus 305 dv~~~~L-~~~D~flILaSDGlwD~ls~~ei~~iv~~~~---~~~~aA~~Lv~~A~~~w~~~~~~g~~DNiTvIvv 376 (466)
++...++ .++| +||||||||||+|+++++.+++.... ++.++|+.|++.|..+ ++.||+|||+|
T Consensus 188 ~~~~~~~~~~~d-~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~-------~~~Dn~T~ivv 255 (255)
T smart00332 188 DVTVVELTEKDD-FLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAKRLIDLALAR-------GSKDNITVIVV 255 (255)
T ss_pred EEEEEEecCCCc-EEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHc-------CCCCCeEEEEC
Confidence 9999996 8888 99999999999999999999998876 5899999999999998 99999999985
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=5.4e-29 Score=238.66 Aligned_cols=273 Identities=28% Similarity=0.375 Sum_probs=191.4
Q ss_pred CCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCc----ccccccCCCCcccccccccccccccccccccCCCc
Q 012288 92 SDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQ----TSFENANGSTHSEETASLSMDEEGFETLDTEGDKL 167 (466)
Q Consensus 92 ~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (466)
.++.+|.+||||. |..+|-.|++.+...+...+...... ...++ .....-.+...+++.+-.++. + +.
T Consensus 142 ~~~~~~slfdgha--gs~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~-~~~g~~~~~s~~s~~~~~~~~----e-k~ 213 (493)
T KOG1323|consen 142 ADGALFSLFDGHA--GSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHEN-LNFGKHRSESSYSMSEMSRED----E-KR 213 (493)
T ss_pred CcceeeeeecCCC--cchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccc-cccccccccCCcccccccchh----h-cc
Confidence 4789999999999 99999999999998887776533111 00000 000000011112222221110 0 11
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhCCCCCccCCCceEEEEEEeCCeeEEEEeccccEEEEEeCCCCcEEEEEeeccCCCC
Q 012288 168 PEIYLPLKKSMLKSFKLMDKELKLHPAIDCFCSGTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPD 247 (466)
Q Consensus 168 ~~~~~~l~~~l~~a~~~~d~~l~~~~~~~~~~sGTTav~~li~~~~l~vanVGDSRa~l~r~~~~~~~~~~qLT~DH~~~ 247 (466)
-.....+..++..||+.||.++...........|||+++++.--++||+||.|||||+|+|+++ ++.|+.+.+|.
T Consensus 214 Ir~E~LViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrnde-----irplS~efTPe 288 (493)
T KOG1323|consen 214 IRHEHLVIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDE-----IRPLSKEFTPE 288 (493)
T ss_pred CchHHhhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCC-----eeecccccCcH
Confidence 1122357789999999999999877666667789999999999999999999999999999998 99999999987
Q ss_pred CHHHHHHHHhcC--------CeEEeccCC-------Cc---ceEEeccC------------------------CCCCCcc
Q 012288 248 LPREAARIQQCK--------GRVFALQDE-------PE---VARVWLPN------------------------NDSPGLA 285 (466)
Q Consensus 248 ~~~E~~Ri~~~g--------g~v~~~~~~-------~~---~~Rv~~~~------------------------~~~~~La 285 (466)
. |++|++... +....+.-. -+ .+|-|.-. +....+.
T Consensus 289 t--ERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~Tig 366 (493)
T KOG1323|consen 289 T--ERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIG 366 (493)
T ss_pred H--HHHHHHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhhe
Confidence 4 888888753 222221100 00 11111100 1244588
Q ss_pred ccccccccccc---------cCCcccccEEEEEEeC-----CCCeEEEEEcCCCCCCCCHHHHHHHHHcC------CCH-
Q 012288 286 MARAFGDFCLK---------DFGLISVPDIYYRRLT-----EKDEFIILATDGVWDVISNKEAVEIVASA------PSQ- 344 (466)
Q Consensus 286 ltRalGd~~~K---------~~gv~~~Pdv~~~~L~-----~~D~flILaSDGlwD~ls~~ei~~iv~~~------~~~- 344 (466)
+||.|||..+| ++ +++.|+|+..+|. .+| ++|||||||||+|+|+|+..+|.+. .|+
T Consensus 367 VsRGlGDH~Lkv~dsnl~iKPF-LssvPeV~V~dl~q~e~~~Dd-VvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~ 444 (493)
T KOG1323|consen 367 VSRGLGDHHLKVVDSNLSIKPF-LSSVPEVRVYDLRQYEHLTDD-VVILATDGLWDVLSNEEVALIVRSFLPSTDPADPS 444 (493)
T ss_pred eccccCcceeeeecCCcccchh-hhcCCeeEEEehhhhccCCCc-EEEEecCchhhhcccHHHHHHHHHhcCCCCCCChh
Confidence 99999999876 44 8899999999886 355 9999999999999999999999874 133
Q ss_pred --HHHHHHHHHHHHH-----hccccCCC-CCCCcEEEEEEEeCCC
Q 012288 345 --ATAARALVDWAVR-----SWKLKYPT-SKNDDCAVVCLFLEHS 381 (466)
Q Consensus 345 --~~aA~~Lv~~A~~-----~w~~~~~~-g~~DNiTvIvv~l~~~ 381 (466)
..+|+.|+..|.. .|+....+ |+.|||||.||-+...
T Consensus 445 RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 445 RYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred HHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccCC
Confidence 3688889888864 38876555 7899999999988754
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.89 E-value=4.1e-22 Score=191.90 Aligned_cols=214 Identities=21% Similarity=0.226 Sum_probs=145.0
Q ss_pred CCCCccEEeeccCCCCCceEEEEeeCCCCC---hhhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCccccccccccc
Q 012288 77 GINQDAMIVWENFSSSDTVFCGIFDGHGPY---GHMVAKKVRDSLPVILCSQWKASNDQTSFENANGSTHSEETASLSMD 153 (466)
Q Consensus 77 ~~NED~~~v~~~~~~~~~~l~gV~DGhG~~---G~~~a~~as~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (466)
...||++++..+ ....+.|||||+||| |-..+.|.++++-. ..+..+....
T Consensus 89 ~~GEDa~Fvss~---~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~-ce~~v~~~~~---------------------- 142 (330)
T KOG1379|consen 89 KGGEDAWFVSSN---PHAIVMGVADGVGGWAEYGIDPGAFSRELMSN-CERLVQNSDF---------------------- 142 (330)
T ss_pred CCCCcceeeccC---cccceEEEccccchHhhcCcCHHHHHHHHHHH-HHHHhccccc----------------------
Confidence 346999999775 367899999999986 77778876655533 2222211100
Q ss_pred ccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhhCCCCCccCCCceEEEEEEe--CCeeEEEEeccccEEEEEeCC
Q 012288 154 EEGFETLDTEGDKLPEIYLPLKKSMLKSFKLMDKELKLHPAIDCFCSGTTAVTLVKQ--GPDIVIGNVGDSRAVLATREK 231 (466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~d~~l~~~~~~~~~~sGTTav~~li~--~~~l~vanVGDSRa~l~r~~~ 231 (466)
... .....|.+||..+-.+ . ...-.+|||+++++. +++||+||+|||-..++|+++
T Consensus 143 ------------~~~----~P~~lL~~ay~~l~~~----~--~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~ 200 (330)
T KOG1379|consen 143 ------------NPS----DPVNLLEKAYAELKSQ----K--VPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGK 200 (330)
T ss_pred ------------CCC----ChHHHHHHHHHHHhhc----C--CCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCE
Confidence 111 3345566666654332 1 112357889888888 899999999999999999975
Q ss_pred CCcEEEEEee--ccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCccccccccccccccCCcccccEEEEE
Q 012288 232 DNSLVAVQLT--VDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYR 309 (466)
Q Consensus 232 ~~~~~~~qLT--~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~K~~gv~~~Pdv~~~ 309 (466)
++.-| +.|..+.|-...- .|+- ..-+++|. ....|+..+
T Consensus 201 -----vv~~S~~Q~H~FN~PyQLs~-------------~p~~--------------~~~~~~d~-------p~~ad~~~~ 241 (330)
T KOG1379|consen 201 -----VVFRSPEQQHYFNTPYQLSS-------------PPEG--------------YSSYISDV-------PDSADVTSF 241 (330)
T ss_pred -----EEEcCchheeccCCceeecc-------------CCcc--------------ccccccCC-------ccccceEEE
Confidence 44443 3444444322111 1100 11223332 234678899
Q ss_pred EeCCCCeEEEEEcCCCCCCCCHHHHHHHHHcC-----CCHHHHHHHHHHHHHHhcc----------------ccCCCCCC
Q 012288 310 RLTEKDEFIILATDGVWDVISNKEAVEIVASA-----PSQATAARALVDWAVRSWK----------------LKYPTSKN 368 (466)
Q Consensus 310 ~L~~~D~flILaSDGlwD~ls~~ei~~iv~~~-----~~~~~aA~~Lv~~A~~~w~----------------~~~~~g~~ 368 (466)
++++|| +||||||||||+|.+++|+.|+... .+++..|++|++.|...-+ .++.+|+.
T Consensus 242 ~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~ 320 (330)
T KOG1379|consen 242 DVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKP 320 (330)
T ss_pred eccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCc
Confidence 999999 9999999999999999999999754 4789999999999987633 23556799
Q ss_pred CcEEEEEEEe
Q 012288 369 DDCAVVCLFL 378 (466)
Q Consensus 369 DNiTvIvv~l 378 (466)
|||||||.++
T Consensus 321 DdITvvls~v 330 (330)
T KOG1379|consen 321 DDITVVLSSV 330 (330)
T ss_pred ccEEEEEecC
Confidence 9999999763
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=3.3e-21 Score=206.80 Aligned_cols=245 Identities=24% Similarity=0.302 Sum_probs=199.3
Q ss_pred eeEEecccCCCCCCCccEEeeccCCCCCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCccc
Q 012288 66 TACVYTQQGKKGINQDAMIVWENFSSSDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSFENANGSTHSE 145 (466)
Q Consensus 66 ~~~~~S~~G~R~~NED~~~v~~~~~~~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 145 (466)
.+++.-..|+|..+-=+.....+|.......||.+||-+ -.....++...+..+|.++.+....
T Consensus 523 t~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~--n~~v~~~vq~~ma~~L~eev~~~~~-------------- 586 (1081)
T KOG0618|consen 523 TYGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSR--NSRVLSLVQDTMASYLAEEVQLYGN-------------- 586 (1081)
T ss_pred eeccchhcccccchhhhhhhhhhcccCCcceEEEEcCCC--chhHHHHHHHHHHHHHHHHHHhccC--------------
Confidence 355666677776655555555566657788999999999 8999999999999999988755421
Q ss_pred ccccccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhhCCCCCccCCCceEEEEEEeC--------CeeEEE
Q 012288 146 ETASLSMDEEGFETLDTEGDKLPEIYLPLKKSMLKSFKLMDKELKLHPAIDCFCSGTTAVTLVKQG--------PDIVIG 217 (466)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~d~~l~~~~~~~~~~sGTTav~~li~~--------~~l~va 217 (466)
+ .+.|..+|..+++++.+.+.. -|..++.+.+.. .++.+|
T Consensus 587 -----------------------e-----t~~mr~~fl~~~rklg~~g~~----lg~~~~~~~i~~d~~~~asS~~l~~A 634 (1081)
T KOG0618|consen 587 -----------------------E-----TEQMRNTFLRLNRKLGEEGQV----LGGSVVLCQIVEDSLSPASSKTLFAA 634 (1081)
T ss_pred -----------------------h-----HHHHHHHHHHHhhhhhhhhcc----ccchhhheeecccccCcccchhhhHh
Confidence 1 122788899999999766633 355555555543 479999
Q ss_pred EeccccEEEEEeCCCCcEEEEEeeccC-CCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCccccccccccccc
Q 012288 218 NVGDSRAVLATREKDNSLVAVQLTVDL-KPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLK 296 (466)
Q Consensus 218 nVGDSRa~l~r~~~~~~~~~~qLT~DH-~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~K 296 (466)
|||+|.++++++++ ..++|.-. -...++|.+||+..+|+|.. -.++ +|....||++|-+.+.
T Consensus 635 nvg~c~avls~ng~-----~~p~t~~~~~~v~~eE~~RI~~~~g~i~e------d~k~------ngvt~~tR~iG~~~l~ 697 (1081)
T KOG0618|consen 635 NVGTCMAVLSRNGK-----PLPTTRSPMLEVDREEYKRIVDSKGFITE------DNKL------NGVTSSTRAIGPFSLF 697 (1081)
T ss_pred hhccchhhhhhcCC-----cCcccccccccCCHHHHHHHHHhcCeecC------CCee------eceeeeeeeccccccc
Confidence 99999999999997 55555443 44589999999999999863 1222 6667899999999888
Q ss_pred cCCcccccEEEEEEeCCCCeEEEEEcCCCCCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccCCCCCCCcEEEEEE
Q 012288 297 DFGLISVPDIYYRRLTEKDEFIILATDGVWDVISNKEAVEIVASAPSQATAARALVDWAVRSWKLKYPTSKNDDCAVVCL 376 (466)
Q Consensus 297 ~~gv~~~Pdv~~~~L~~~D~flILaSDGlwD~ls~~ei~~iv~~~~~~~~aA~~Lv~~A~~~w~~~~~~g~~DNiTvIvv 376 (466)
+. +.++|+|....|++.|+|||||+-+||++|+-+++++++++..++-.||++|++.|... |..||++|+||
T Consensus 698 P~-v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL~d~AqSY-------gc~~nv~vlVv 769 (1081)
T KOG0618|consen 698 PH-VLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKKLCDLAQSY-------GCAENVSVLVV 769 (1081)
T ss_pred cc-ccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHHHHHHHHhc-------ccccCeeEEEE
Confidence 86 99999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EeCCCCC
Q 012288 377 FLEHSSA 383 (466)
Q Consensus 377 ~l~~~~~ 383 (466)
++.....
T Consensus 770 ~l~~~~~ 776 (1081)
T KOG0618|consen 770 RLNHLEE 776 (1081)
T ss_pred Eeecchh
Confidence 9988765
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.84 E-value=3e-20 Score=175.85 Aligned_cols=186 Identities=24% Similarity=0.260 Sum_probs=104.4
Q ss_pred ecccCCCCCCCccEEeeccCCCCCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCccccccc
Q 012288 70 YTQQGKKGINQDAMIVWENFSSSDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSFENANGSTHSEETAS 149 (466)
Q Consensus 70 ~S~~G~R~~NED~~~v~~~~~~~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (466)
.+++|.+..|||++.++.. .+..+++|+||+| |...++.++..++..+.+.+.......
T Consensus 3 ~sh~~~~~~nqD~~~~~~~---~~~~~~aVaDG~g--~~~~~~~aa~~av~~~~~~l~~~~~~~---------------- 61 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD---DDGNLAAVADGVG--GSPYGEEAAQLAVETFINYLKKLLSQE---------------- 61 (212)
T ss_dssp ----TTSSS--EEEEEE-T---CCTCEEEEEEEES--TTTHHHHHHHHHHHHHHHHHHHSCCCH----------------
T ss_pred ccccCCCCCCCCCEEeeeC---CCCEEEEEEECCC--CCchhHHHHHHHHHHHHHHHHhccccc----------------
Confidence 3688999999999997654 3667779999999 778888888888887777776543111
Q ss_pred ccccccccccccccCCCchhhhHHHHHHHHHHHH-HH----HHHHhhCCCCCccCCCceEEEEEEeCCeeEEEEeccccE
Q 012288 150 LSMDEEGFETLDTEGDKLPEIYLPLKKSMLKSFK-LM----DKELKLHPAIDCFCSGTTAVTLVKQGPDIVIGNVGDSRA 224 (466)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~-~~----d~~l~~~~~~~~~~sGTTav~~li~~~~l~vanVGDSRa 224 (466)
.....+.+-+.+.+... .+ ..... ......++||++++++.++.++++|+||||+
T Consensus 62 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i 121 (212)
T PF13672_consen 62 -----------------SPSSIEALIRAIKKEILSIVRAFQSAKQA---DLELRDYGTTLLALVIDPDKVYIFNIGDSRI 121 (212)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHH----HHHHH---SGGGTT-EE-EEEEEEETTEEEEEEESS-EE
T ss_pred -----------------chHHHHHHHHHHHHHHHHHhhhhhhhhhc---cccccccCceEEEEEEECCEEEEEEECCCeE
Confidence 00001122222222221 11 01111 2234567999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCccccccccccccccCCccccc
Q 012288 225 VLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVP 304 (466)
Q Consensus 225 ~l~r~~~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~K~~gv~~~P 304 (466)
|+..+++ .+.+++.||.. +..+ .++.+.... .....
T Consensus 122 ~~~~~~g----~~~~l~~~~~~----~~~~-------------------------------~~~~~~~~~-----~~~~~ 157 (212)
T PF13672_consen 122 YVIRRNG----EIQQLTDDHSG----EYPN-------------------------------QTRSLTGDD-----PEPDV 157 (212)
T ss_dssp EEEEETT----EEEE-S---BH----HHHH-------------------------------CTTSCCHHC-----CCTET
T ss_pred EEEECCC----EEEEcCCCccc----hhhh-------------------------------hhhccCccc-----cccCC
Confidence 8776554 47889999852 2222 122222221 22234
Q ss_pred EEEEEEeCCCCeEEEEEcCCCCCCCCHHH-HHHHHHcC
Q 012288 305 DIYYRRLTEKDEFIILATDGVWDVISNKE-AVEIVASA 341 (466)
Q Consensus 305 dv~~~~L~~~D~flILaSDGlwD~ls~~e-i~~iv~~~ 341 (466)
++..+++.++| .|||||||||+.|...+ +..++...
T Consensus 158 ~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~l~~~ 194 (212)
T PF13672_consen 158 QYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQFLKDL 194 (212)
T ss_dssp EEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH----
T ss_pred eEEEEEcCCCC-EEEEECcCccccCCCHHHHHHHhhhc
Confidence 67778888999 99999999999998655 66776554
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.75 E-value=9.1e-17 Score=149.79 Aligned_cols=174 Identities=16% Similarity=0.089 Sum_probs=128.0
Q ss_pred CCCCccEEeeccCCCCCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCcccccccccccccc
Q 012288 77 GINQDAMIVWENFSSSDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSFENANGSTHSEETASLSMDEEG 156 (466)
Q Consensus 77 ~~NED~~~v~~~~~~~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (466)
...-|.+.+...- ++..+++|+|||| +...|.+++..+...+...+...
T Consensus 15 ~~~GD~~~~~~~~--~~~~~~~v~Dg~G--~G~~aa~~s~~~~~~~~~~~~~~--------------------------- 63 (193)
T smart00331 15 QVGGDFYDVVKLP--EGRLLIAIADVMG--KGLAAALAMSMARSALRTLLSEG--------------------------- 63 (193)
T ss_pred hcCccEEEEEEeC--CCeEEEEEEecCC--CChHHHHHHHHHHHHHHHHhhcC---------------------------
Confidence 5567888776532 3578999999999 88888888888888877654221
Q ss_pred cccccccCCCchhhhHHHHHHHHHHHHHHHHHHhhCCCCCccCCCceEEEEEE--eCCeeEEEEeccccEEEEEeCCCCc
Q 012288 157 FETLDTEGDKLPEIYLPLKKSMLKSFKLMDKELKLHPAIDCFCSGTTAVTLVK--QGPDIVIGNVGDSRAVLATREKDNS 234 (466)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~l~~a~~~~d~~l~~~~~~~~~~sGTTav~~li--~~~~l~vanVGDSRa~l~r~~~~~~ 234 (466)
..+.+.+..+|+.+.... ...+|+|++++++ ..++++++|+||+|+|+++.++
T Consensus 64 -------------------~~~~~~l~~~n~~l~~~~---~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~--- 118 (193)
T smart00331 64 -------------------ISLSQILERLNRAIYENG---EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADG--- 118 (193)
T ss_pred -------------------CCHHHHHHHHHHHHHhcC---CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCC---
Confidence 113334555666665542 2457999999988 6789999999999999999432
Q ss_pred EEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCccccccccccccccCCcccccEEEEEEeCCC
Q 012288 235 LVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEK 314 (466)
Q Consensus 235 ~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~K~~gv~~~Pdv~~~~L~~~ 314 (466)
...+++.+ .++.+|.. ...++++..+.+.++
T Consensus 119 -~~~~~~~~------------------------------------------~~~~lG~~------~~~~~~~~~~~l~~g 149 (193)
T smart00331 119 -GLVEDLDD------------------------------------------LGAPLGLE------PDVEVDVRELTLEPG 149 (193)
T ss_pred -CeEEEcCC------------------------------------------CCceeeeC------CCCcceeEEEeeCCC
Confidence 13444433 23345544 333577888999999
Q ss_pred CeEEEEEcCCCCCCCCHHHHHHHHHcCC--CHHHHHHHHHHHHH
Q 012288 315 DEFIILATDGVWDVISNKEAVEIVASAP--SQATAARALVDWAV 356 (466)
Q Consensus 315 D~flILaSDGlwD~ls~~ei~~iv~~~~--~~~~aA~~Lv~~A~ 356 (466)
| .|+|+||||||.++.+++.+++.+.. ++++++++|.+.+.
T Consensus 150 d-~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 150 D-LLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred C-EEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9 99999999999999999999998764 68888888888764
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.55 E-value=3.1e-13 Score=150.07 Aligned_cols=194 Identities=16% Similarity=0.101 Sum_probs=134.4
Q ss_pred cCCCCCCCccEEeeccCCCCCceEEEEeeCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCcccccccccc
Q 012288 73 QGKKGINQDAMIVWENFSSSDTVFCGIFDGHGPYGHMVAKKVRDSLPVILCSQWKASNDQTSFENANGSTHSEETASLSM 152 (466)
Q Consensus 73 ~G~R~~NED~~~v~~~~~~~~~~l~gV~DGhG~~G~~~a~~as~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (466)
++.+..+.|.+.+...- ++..+++|+||+| ....|..++..+...|.+.+....
T Consensus 561 k~g~~vsGD~y~~~~l~--~g~~~~~laDGmG--hG~~Aa~~S~~~~~ll~~~~~~g~---------------------- 614 (764)
T TIGR02865 561 KDGELVSGDSYSFGKLS--AGKYAVAISDGMG--SGPEAAQESSACVRLLEKFLESGF---------------------- 614 (764)
T ss_pred CCCCcccCceEEEEEEC--CCEEEEEEEcccC--CCHHHHHHHHHHHHHHHHHHHcCC----------------------
Confidence 34467899999876532 3567889999999 555555566666666655432210
Q ss_pred cccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhhCCCCCccCCCceEEEEEEe--CCeeEEEEeccccEEEEEeC
Q 012288 153 DEEGFETLDTEGDKLPEIYLPLKKSMLKSFKLMDKELKLHPAIDCFCSGTTAVTLVKQ--GPDIVIGNVGDSRAVLATRE 230 (466)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~d~~l~~~~~~~~~~sGTTav~~li~--~~~l~vanVGDSRa~l~r~~ 230 (466)
.. ..++..+|+.+.... ...+.+|+.+++++ .+++.++|+|+++.|+.|++
T Consensus 615 --------------------~~----~~ai~~lN~~L~~~~---~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~ 667 (764)
T TIGR02865 615 --------------------DR----EVAIKTVNSILSLRS---TDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGA 667 (764)
T ss_pred --------------------CH----HHHHHHHHHHHHhCC---CCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECC
Confidence 01 234455566554332 12368999888885 68999999999999998875
Q ss_pred CCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEeccCCCCCCccccccccccccccCCcccccEEEEEE
Q 012288 231 KDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRR 310 (466)
Q Consensus 231 ~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~~~~~~~LaltRalGd~~~K~~gv~~~Pdv~~~~ 310 (466)
. ..+++..+-| +|-. -..++++...+
T Consensus 668 ~-----v~~i~s~~lP-------------------------------------------lGil------~~~~~~~~~~~ 693 (764)
T TIGR02865 668 K-----VEVIRSSNLP-------------------------------------------IGIL------DEVDVELVRKK 693 (764)
T ss_pred E-----EEEecCCCce-------------------------------------------eEec------cCCccceEEEE
Confidence 3 6666533211 2211 11256778889
Q ss_pred eCCCCeEEEEEcCCCCCCCCHHH-----HHHHHHcC--CCHHHHHHHHHHHHHHhccccCCCCCCCcEEEEEEEe
Q 012288 311 LTEKDEFIILATDGVWDVISNKE-----AVEIVASA--PSQATAARALVDWAVRSWKLKYPTSKNDDCAVVCLFL 378 (466)
Q Consensus 311 L~~~D~flILaSDGlwD~ls~~e-----i~~iv~~~--~~~~~aA~~Lv~~A~~~w~~~~~~g~~DNiTvIvv~l 378 (466)
+.+|| +|||+||||||..++.+ +.+++.+. .+++++++.|++.|.+... +...||+|++++++
T Consensus 694 L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~~----~~~~DD~Tvlvirv 763 (764)
T TIGR02865 694 LKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAKELRS----GKIKDDMTVIVAKV 763 (764)
T ss_pred eCCCC-EEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC----CCCCCCeEEEEEEe
Confidence 99999 99999999999886533 77778653 5799999999999987621 13589999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.39 E-value=6.3e-11 Score=110.09 Aligned_cols=123 Identities=19% Similarity=0.161 Sum_probs=84.7
Q ss_pred CCceEEEEEEe--CCeeEEEEeccccEEEEEeCCCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEecc
Q 012288 200 SGTTAVTLVKQ--GPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLP 277 (466)
Q Consensus 200 sGTTav~~li~--~~~l~vanVGDSRa~l~r~~~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~ 277 (466)
..+|++++++. .+.++++|+|++++++++.++ + ....+....
T Consensus 60 ~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~-~--~~~~~~~~~--------------------------------- 103 (193)
T PF07228_consen 60 RYATACYAIIDPETGTLTYANAGHPPPLLLRPGG-R--EIEQLESEG--------------------------------- 103 (193)
T ss_dssp TTEEEEEEEEETTTTEEEEEEESSSEEEEEETTC-T--EEEEETCSS---------------------------------
T ss_pred ccceEEEEEecccceEEEEeCCCCCCEEEEeccc-c--ceeecccCc---------------------------------
Confidence 57888888866 578999999999999999853 1 122222111
Q ss_pred CCCCCCccccccccccccccCCcccccEEEEEEeCCCCeEEEEEcCCCCCCCCHH-------HHHHHHHc--CCCHHHHH
Q 012288 278 NNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDEFIILATDGVWDVISNK-------EAVEIVAS--APSQATAA 348 (466)
Q Consensus 278 ~~~~~~LaltRalGd~~~K~~gv~~~Pdv~~~~L~~~D~flILaSDGlwD~ls~~-------ei~~iv~~--~~~~~~aA 348 (466)
-.||.. ...++....+.+.++| .|+|+||||+|.+..+ .+.+++.. ..++++++
T Consensus 104 ----------~~lG~~------~~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (193)
T PF07228_consen 104 ----------PPLGIF------EDIDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEII 166 (193)
T ss_dssp ----------BBCSSS------CTTCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHH
T ss_pred ----------cceeee------ccccccceEEEecccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHH
Confidence 013432 1235667789999999 9999999999998443 44677763 35789999
Q ss_pred HHHHHHHHHhccccCCCCCCCcEEEEEEEeC
Q 012288 349 RALVDWAVRSWKLKYPTSKNDDCAVVCLFLE 379 (466)
Q Consensus 349 ~~Lv~~A~~~w~~~~~~g~~DNiTvIvv~l~ 379 (466)
+.|++.+... ..+...||+||+++++.
T Consensus 167 ~~l~~~~~~~----~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 167 DALLEAIDRF----GKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp HHHHHHHHHH----TTSSTSS-EEEEEEEE-
T ss_pred HHHHHHHHHh----cCCCCCCceEEEEEEEC
Confidence 9999999883 12367899999999873
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.32 E-value=0.00012 Score=75.49 Aligned_cols=125 Identities=17% Similarity=0.181 Sum_probs=88.2
Q ss_pred CCceEEEEEEe--CCeeEEEEeccccEEEEEeCCCCcEEEEEeeccCCCCCHHHHHHHHhcCCeEEeccCCCcceEEecc
Q 012288 200 SGTTAVTLVKQ--GPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLP 277 (466)
Q Consensus 200 sGTTav~~li~--~~~l~vanVGDSRa~l~r~~~~~~~~~~qLT~DH~~~~~~E~~Ri~~~gg~v~~~~~~~~~~Rv~~~ 277 (466)
+=+|....+++ .+.+..+|+|---+++.+.+++. ....|+
T Consensus 231 ~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~--~~~~l~------------------------------------ 272 (367)
T COG2208 231 MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEI--EVEDLT------------------------------------ 272 (367)
T ss_pred cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCc--eeEEcc------------------------------------
Confidence 45666666655 68999999999999999886511 011111
Q ss_pred CCCCCCccccccccccccccCCcccccEEEEEEeCCCCeEEEEEcCCCCC-------CCCHHHHHHHHHc--CCCHHHHH
Q 012288 278 NNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDEFIILATDGVWD-------VISNKEAVEIVAS--APSQATAA 348 (466)
Q Consensus 278 ~~~~~~LaltRalGd~~~K~~gv~~~Pdv~~~~L~~~D~flILaSDGlwD-------~ls~~ei~~iv~~--~~~~~~aA 348 (466)
+....+|.. -...+.+....+.+|| .|||.||||.| .+..+...+++.. ...+++++
T Consensus 273 -------~~g~piG~~------~~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 338 (367)
T COG2208 273 -------ALGLPIGLL------PDYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEIL 338 (367)
T ss_pred -------CCCceeeec------CCccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHH
Confidence 144456654 3345667788999999 99999999999 5677778888773 34678888
Q ss_pred HHHHHHHHHhccccCCCCCCCcEEEEEEEeC
Q 012288 349 RALVDWAVRSWKLKYPTSKNDDCAVVCLFLE 379 (466)
Q Consensus 349 ~~Lv~~A~~~w~~~~~~g~~DNiTvIvv~l~ 379 (466)
+.+.+.....-.. ...+||+|++++++.
T Consensus 339 ~~i~~~l~~~~~~---~~~~DDiTll~lk~~ 366 (367)
T COG2208 339 EAILESLEELQGD---QIQDDDITLLVLKVK 366 (367)
T ss_pred HHHHHHHHHhhCC---ccccCceEEEEEEec
Confidence 8888877765111 145788999999875
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=28.05 E-value=5.2e+02 Score=25.52 Aligned_cols=44 Identities=7% Similarity=-0.035 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhCCCCCccCCCceEEEEEEe--CCeeEEEEeccccEEE
Q 012288 179 LKSFKLMDKELKLHPAIDCFCSGTTAVTLVKQ--GPDIVIGNVGDSRAVL 226 (466)
Q Consensus 179 ~~a~~~~d~~l~~~~~~~~~~sGTTav~~li~--~~~l~vanVGDSRa~l 226 (466)
.+.+..+|+.+....... --|++.++++ .+++.++|.|-...++
T Consensus 208 ~~~l~~lN~~l~~~~~~~----~~t~~~~~~d~~~~~l~~~~AGhp~~~~ 253 (303)
T PRK10693 208 GALLKQVNHLLRQANLPG----QFPLLVGYYHRELKNLILVSAGLNATLN 253 (303)
T ss_pred HHHHHHHHHHHHhcCCCc----eeeEEEEEEEcCCCeEEEEeCCCCCEEe
Confidence 344556777776553211 1477777776 4689999999999884
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=26.34 E-value=38 Score=26.37 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=14.0
Q ss_pred CCCeEEEEEcCCCCCCCCHH
Q 012288 313 EKDEFIILATDGVWDVISNK 332 (466)
Q Consensus 313 ~~D~flILaSDGlwD~ls~~ 332 (466)
+|. .||+|+||+|=.+...
T Consensus 26 ~G~-Rllva~nGv~lEv~r~ 44 (72)
T PF09436_consen 26 PGH-RLLVASNGVFLEVRRP 44 (72)
T ss_pred CCc-EEEEecCcEEEEEech
Confidence 455 8999999999654443
Done!