Your job contains 1 sequence.
>012289
MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA
EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES
DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPL
GGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRFSPVAGGRSGFPPFGSGYGMGMIE
PGLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGYDGGNGGNTSFFSSVTRNLWG
NGGLNYNSNTASSSAYMGSGSGTIGGNTFGNTGVNWGSSAISAQGGGNNVSNSNANFGYG
SGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFADLYGTGGGSGSVYGDPTWRSS
SSERDGSGSFGYGLSSGTADVSAKNSPGFVGGYSVNKRQSNRGIAT
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012289
(466 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 706 1.7e-86 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 610 6.8e-67 2
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 620 1.3e-65 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 504 7.7e-52 2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 473 1.4e-48 2
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 380 1.9e-43 3
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 369 3.0e-43 3
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 389 4.6e-42 2
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 386 6.9e-42 3
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 386 6.9e-42 3
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 418 9.5e-42 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 379 2.3e-41 3
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 396 3.2e-41 2
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 406 1.4e-40 2
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 392 1.5e-39 2
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 385 4.0e-39 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 385 4.0e-39 2
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 385 4.0e-39 2
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 392 1.1e-38 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 392 1.3e-38 2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 382 3.5e-38 2
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 399 3.9e-37 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 397 6.3e-37 1
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 369 6.4e-37 2
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 361 6.4e-37 2
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 374 8.2e-37 2
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 368 8.2e-37 2
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 367 1.0e-36 2
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 367 1.0e-36 2
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 367 1.0e-36 2
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 370 1.3e-36 2
ZFIN|ZDB-GENE-030912-14 - symbol:hnrnpa1 "heterogeneous n... 315 1.4e-36 3
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 390 3.5e-36 1
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 361 4.4e-36 2
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 329 4.6e-36 3
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 387 7.2e-36 1
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 303 7.4e-36 3
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 303 7.4e-36 3
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 303 1.2e-35 3
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 303 1.2e-35 3
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 314 1.5e-35 3
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 357 1.9e-35 2
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 380 4.0e-35 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 380 4.0e-35 1
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 380 4.0e-35 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 378 6.5e-35 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 298 1.3e-34 3
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 295 2.7e-34 3
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 308 3.4e-34 3
UNIPROTKB|D4A1X0 - symbol:D4A1X0 "Uncharacterized protein... 293 3.4e-34 3
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 295 4.3e-34 3
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 303 5.5e-34 3
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 303 5.5e-34 3
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 303 5.5e-34 3
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 303 5.5e-34 3
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 303 5.5e-34 3
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 303 5.5e-34 3
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 296 5.5e-34 3
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 303 7.0e-34 3
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 297 7.0e-34 3
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 295 7.0e-34 3
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 295 7.0e-34 3
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 297 8.8e-34 3
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 297 8.8e-34 3
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 297 8.8e-34 3
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 297 8.8e-34 3
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 297 8.8e-34 3
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 293 8.8e-34 3
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 300 1.4e-33 3
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 295 1.8e-33 3
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 303 2.3e-33 3
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 291 3.7e-33 3
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 303 4.7e-33 3
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 297 4.7e-33 3
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 296 6.2e-33 2
UNIPROTKB|F1N3T3 - symbol:F1N3T3 "Uncharacterized protein... 280 7.6e-33 3
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 325 1.3e-32 2
UNIPROTKB|E9PSU5 - symbol:E9PSU5 "Uncharacterized protein... 281 1.6e-32 3
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 322 2.6e-32 2
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 322 2.6e-32 2
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 295 3.2e-32 3
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 318 6.9e-32 2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 316 6.9e-32 2
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 323 8.8e-32 2
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 325 1.4e-31 2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 315 1.4e-31 2
UNIPROTKB|F1N2T0 - symbol:HNRPDL "Uncharacterized protein... 310 1.4e-31 2
UNIPROTKB|E2QRT0 - symbol:HNRPDL "Uncharacterized protein... 310 1.4e-31 2
UNIPROTKB|O14979 - symbol:HNRPDL "Heterogeneous nuclear r... 310 1.4e-31 2
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri... 310 1.4e-31 2
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 319 2.3e-31 2
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 315 2.3e-31 2
UNIPROTKB|E2RJS6 - symbol:E2RJS6 "Uncharacterized protein... 262 2.7e-31 3
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 315 3.0e-31 2
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 303 3.0e-31 2
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 303 3.0e-31 2
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 348 4.8e-31 1
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 313 4.8e-31 2
UNIPROTKB|F1NCV5 - symbol:HNRPDL "Heterogeneous nuclear r... 313 4.8e-31 2
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r... 313 4.8e-31 2
WARNING: Descriptions of 958 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 706 (253.6 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 171/313 (54%), Positives = 192/313 (61%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
MQSDNGKLFIGGISWDTNEERLKEYFS++GEV+EAVI+KDR TGRARGFGFVVFADPAVA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXX--RTRKIFVGGLASTVT 118
EIVI EKHNIDGR+VEAKKAVPRDDQ ++NR RTRKIFVGGL S+VT
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPT-- 176
ESDFK YF+QFGT TDVVVMYDHNTQRPRGFGFITYDSEEAV+KV EL+
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 177 -RSPLGGYHYGLSRVNSFLNGYTQGYTP--STVGGYGLRMDGRFSPVAXXXXXXXXXXXX 233
R+ G SR + GY+ G + + GY G F+P A
Sbjct: 181 KRAVPKELSPGPSR-SPLGAGYSYGVNRVNNLLNGYA---QG-FNPAAVGGYGLRMDGRF 235
Query: 234 XXXXXIEPGL-NPS--FGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGYDXXXXXXTSF 290
G N S +G N NF+ L G Y GN + YG G T+
Sbjct: 236 SPVGAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVD-YGR--GMSPYYIGNTNR 292
Query: 291 FSSVTRNLWGNGG 303
F GNGG
Sbjct: 293 FGPAVGYEGGNGG 305
Score = 435 (158.2 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 86/147 (58%), Positives = 101/147 (68%)
Query: 162 KVKRAVPKELSPGPTRSPLG-GYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRFSPV 220
+VKRAVPKELSPGP+RSPLG GY YG++RVN+ LNGY QG+ P+ VGGYGLRMDGRFSPV
Sbjct: 179 EVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPV 238
Query: 221 -AXXXXXXXXXXXXXXXXXIEPGLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
A + GL F N+N N+ YGRG+SPYYIGN NR+G +G
Sbjct: 239 GAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVG 298
Query: 280 YDXXXXXX-TSFFSSVTRNLWGN-GGL 304
Y+ +SFFSSVTRNLWGN GGL
Sbjct: 299 YEGGNGGGNSSFFSSVTRNLWGNNGGL 325
Score = 178 (67.7 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 51/117 (43%), Positives = 60/117 (51%)
Query: 357 FGYG-SGDNSFGLGAGGYG-RNPGTT-LAQSSSF----AASNGGYDGVFADLXXXXXXXX 409
FGYG +G++ FGLG GGY RNPG A SSSF A +N GYD A L
Sbjct: 378 FGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNTGYDT--AGLAEFYGNGA 435
Query: 410 XXXXDPTWXXXXXXXXXXXXXXXXXXXX--TADVSAKNS-PGFVGGYSVNKRQSNRG 463
DPTW ++DVSA++S PG+VG YSVNKRQ NRG
Sbjct: 436 VYS-DPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGSYSVNKRQPNRG 491
Score = 70 (29.7 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 61/264 (23%), Positives = 92/264 (34%)
Query: 24 EYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNIDGRMVEAKKAVPR 83
E F T +VV + + R GF ++ AV +++++ H ++G+MVE K+AVP+
Sbjct: 129 EQFGTTTDVV-VMYDHNTQRPRGFGF-ITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Query: 84 DDQIVLNRXXXXXXXXXXXXRTRKIF-----------VGGLA-------STVT--ESDFK 123
+ +R R + VGG S V S F
Sbjct: 187 ELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRSGFA 246
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGF-GFITYDSEEAVDKVKRAVPKELSPGPTRSPLGG 182
Y +G + V +D P GF G Y+ VD + P + P G
Sbjct: 247 NYSSGYG----MNVNFDQGL--PTGFTGGTNYNGN--VDYGRGMSPYYIGNTNRFGPAVG 298
Query: 183 YHYGLSRVNS-FLNGYTQGYTPSTVGGYGLRMDGRFSPVAXXXXXXXXXXXXXXXXXIEP 241
Y G NS F + T+ + GG + S
Sbjct: 299 YEGGNGGGNSSFFSSVTRNLWGNN-GGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNS 357
Query: 242 GLN---PSFGANANFNSNLSYGRG 262
G+N P G NA N N+ +G G
Sbjct: 358 GVNWGAPGGGNNAVSNENVKFGYG 381
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 610 (219.8 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
Identities = 122/177 (68%), Positives = 138/177 (77%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI 62
SD GKLFIGGISWDT+EERL+EYF YG++VEAVIM+DR TGRARGFGF+VFADP+VAE
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
Query: 63 VIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXX-------XXXXXXXXXRTRKIFVGGLAS 115
VI +KH IDGR VEAKKAVPRDDQ VL R RT+KIFVGGL S
Sbjct: 72 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 131
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELS 172
++TE++FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DSEE+VD V EL+
Sbjct: 132 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELN 188
Score = 419 (152.6 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 104/223 (46%), Positives = 128/223 (57%)
Query: 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD-- 161
RT+KIFVGGL S++TE++FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DSEE+VD
Sbjct: 120 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 179
Query: 162 -------------KVKRAVPKELSPG-PTRSPLGGY--HYGL----SRVNSFLNGYTQGY 201
+VKRAVPKELS P RSPL GY +YG+ S NS+ N + GY
Sbjct: 180 LHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGY 239
Query: 202 TPSTVGGYGLRMDGRFSPVAXXXXXXXXXXXXXXXXXIEPGLNPSFGANANFNSN-LSYG 260
+ +G G RFSP+ GLN N+NF+ N L Y
Sbjct: 240 NNNNLGSAG-----RFSPIGSGRNAFSSFGL---------GLNQELNLNSNFDGNTLGYS 285
Query: 261 R--GLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWGN 301
R G + +PNRY SP+GY+ S ++ R+LWGN
Sbjct: 286 RIPGNQYFNSASPNRYNSPIGYNRGD----SAYNPSNRDLWGN 324
Score = 179 (68.1 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+ E K YF +G + + V+M D NT R RGFGF+ F ++V+ +
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 67 K-HNIDGRMVEAKKAVPRD 84
H ++G+MVE K+AVP++
Sbjct: 183 TFHELNGKMVEVKRAVPKE 201
Score = 88 (36.0 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
Identities = 30/114 (26%), Positives = 43/114 (37%)
Query: 360 GSGDNSFGLGA-----GGYGRNPGTTLAQSS-SFAASNGGYDGVFADLXXXXXXXXXXXX 413
G+ ++GL + GYGR+ G S SFA + G+DG +L
Sbjct: 340 GNNRGNWGLSSVVSDNNGYGRSYGAGSGLSGLSFAGNTNGFDGSIGELYRGSSVYSDSTW 399
Query: 414 D---PTWXXXXXXXXXXXXXXXXXXXXTADVSAKNSPGFVGGYSVNKRQSNRGI 464
P +D SA S G+ G Y+V RQ++RGI
Sbjct: 400 QQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSANASEGYSGNYNVGNRQTHRGI 453
Score = 42 (19.8 bits), Expect = 9.0e-65, Sum P(3) = 9.0e-65
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 184 HYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDG 215
++GLS V S NGY + Y + G GL G
Sbjct: 345 NWGLSSVVSDNNGYGRSYGAGS-GLSGLSFAG 375
Score = 38 (18.4 bits), Expect = 9.0e-65, Sum P(3) = 9.0e-65
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 240 EPGLNPSFGANANFN-SNLSYGRGL 263
+P N S G + N+N N RG+
Sbjct: 429 DPSANASEGYSGNYNVGNRQTHRGI 453
Score = 37 (18.1 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 442 SAKNSPGFVGGYSVNKRQSNRGIAT 466
S + PG+ G SV + N G+++
Sbjct: 326 SDSSGPGWNLGVSVGNNRGNWGLSS 350
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 620 (223.3 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 122/176 (69%), Positives = 140/176 (79%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M+SD GKLFIGGISWDT+EERL++YFS YG+VVEAVIM+DR TGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXX----XXXRTRKIFVGGLAST 116
E VI +KH IDGR VEAKKAVPRDDQ VL R RT+KIFVGGL S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELS 172
+TE +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DS++AVD+V EL+
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELN 176
Score = 392 (143.0 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 101/221 (45%), Positives = 126/221 (57%)
Query: 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
RT+KIFVGGL S++TE +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DS++AVD+V
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 164 ---------------KRAVPKELSP-GPTRSPLG-GYHYG--LSRV--NSFLNGYTQGYT 202
KRAVPKE+SP RSPL G +YG +R+ NS+ N + G
Sbjct: 168 LHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPG-- 225
Query: 203 PSTVGGYGLRMDGRFSPVAXXXXXXXXXXXXXXXXXIEPGLNPSFGANANFNSNLSYGRG 262
P G + RFSPV + LNPS + S Y R
Sbjct: 226 PGFYNSLG-PVGRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTS---STFGYNRI 281
Query: 263 LS-PYYIG-NPNRYGSPLGYDXXXXXXTSFFSSVTRNLWGN 301
S PY+ G +PNRY SP+G++ S ++S R+LWGN
Sbjct: 282 PSNPYFNGASPNRYTSPIGHNRTE----SPYNSNNRDLWGN 318
Score = 191 (72.3 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 35/85 (41%), Positives = 54/85 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVF-ADPAVAEIVIQ 65
K+F+GG+ EE K YF +G + + V+M D NT R RGFGF+ F +D AV ++ +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 66 EKHNIDGRMVEAKKAVPRDDQIVLN 90
H ++G++VE K+AVP++ V N
Sbjct: 171 TFHELNGKLVEVKRAVPKEISPVSN 195
Score = 66 (28.3 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 27/99 (27%), Positives = 37/99 (37%)
Query: 372 GYGRNPGTTLAQSSSFAASNGGYDGVFADLXXXXXXXXXXXXDPTWXXXXXXXXXXXXXX 431
G+GRN GT+ SSS NG ++G +L D TW
Sbjct: 354 GFGRNYGTSSGLSSS--PFNG-FEGSIGELYRGGSVYS----DSTWQQQQLPSQSSHELD 406
Query: 432 XXXXXXTADV-------SAKNSPGFVGGYSVNKRQSNRG 463
D+ SA + + G Y+V RQ+NRG
Sbjct: 407 NLSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRG 445
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 504 (182.5 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
Identities = 126/322 (39%), Positives = 175/322 (54%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M SD GKLF+GGISW+T+E++L+E+F+ YGEV +A++M+D+ TGR RGFGFV+F+DP+V
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRX----XXXXXXXXXXXRTRKIFVGGLAST 116
+ V+QEKH+ID R V+ K+A+ R++Q V R +T+KIFVGGL T
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPT 176
+T+ +F++YF+ +G +TDV +MYD T RPRGFGF+++DSE+AVD V +LS
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 177 R---------SPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRFSPVAXXXXXX 227
+P GG G S GY QGY GG DGR
Sbjct: 181 EVKRALPKDANPGGG---GRSMGGGGSGGY-QGY-----GGNESSYDGRMD--------- 222
Query: 228 XXXXXXXXXXXIEPGLNPSFGAN---ANFNSNLSYGRGLSPY--YIGNPNRYGS--PLGY 280
+ GL PS+G++ A + N S G G Y Y G+ YG+ GY
Sbjct: 223 --SNRFLQHQSVGNGL-PSYGSSGYGAGYG-NGSNGAGYGAYGGYTGSAGGYGAGATAGY 278
Query: 281 DXXXXXXTSFFSSV---TRNLW 299
+ SS RN W
Sbjct: 279 GATNIPGAGYGSSTGVAPRNSW 300
Score = 51 (23.0 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
GYG+ G GYG PG S SN GY
Sbjct: 307 GYGNPGYGSGAAHSGYGV-PGAAPPTQSPSGYSNQGY 342
Score = 47 (21.6 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGA-----GGYGRNPGTTLAQSSSFAASNG 392
GYG+G + G GA GYG + G S AS+G
Sbjct: 269 GYGAGATA-GYGATNIPGAGYGSSTGVAPRNSWDTPASSG 307
Score = 46 (21.3 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 358 GYGSGDNSFGLGAGGY-GRNPGTTLAQSSSFAASNGGY-DG 396
G SG S G+GGY G G +S GGY DG
Sbjct: 365 GRPSGGGSNNPGSGGYMGGGYGDGSWRSDPSQGYGGGYNDG 405
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 473 (171.6 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 114/308 (37%), Positives = 162/308 (52%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M+SD GKLFIGGISWDT+E L+EYFS +GEV++ +M+++ TGR RGFGFV F+DPAV
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXX----XXXXXRTRKIFVGGLAST 116
+ V+Q+KH+ID R V+ K+A+ R++Q R RT+KIFVGGL
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPT 176
+T +F+ YF+ +G ++D V+M D TQRPRGFGF+++DSE++VD V +L+
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Query: 177 ---RSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRFSPVAXXXXXXXXXXXX 233
R+ + G++ +G G+ P G G +GR
Sbjct: 181 EVKRALPKDANPGIASGGGRGSGGAGGF-PGYGGSGGSGYEGRVD-------SNRYMQPQ 232
Query: 234 XXXXXIEPGLNPSFGANANFNSN-LSYGRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFS 292
P +G + SN + YG G Y GNP G+P G F
Sbjct: 233 NTGSGYPPYGGSGYGTGYGYGSNGVGYG-GFGGY--GNPA--GAPYGNPSVPGAG---FG 284
Query: 293 SVTRNLWG 300
S R+ WG
Sbjct: 285 SGPRSSWG 292
Score = 51 (23.0 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
+GYG D+S+G + YG G +S + ++GG G +AD
Sbjct: 335 YGYGGNDSSYGTPSA-YGAVGG----RSGNMPNNHGG--GGYAD 371
Score = 45 (20.9 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 359 YGSGDNSFGL-GAGGYGRNPGTTLAQSSSFAASNGGY 394
+G G + L G+GGYG + G ++ A GGY
Sbjct: 364 HGGGGYADALDGSGGYGNHQG-----NNGQAGYGGGY 395
Score = 38 (18.4 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G S G G+ GYG + + S + GG G
Sbjct: 322 GQAGASAGYGSQGYGYGGNDSSYGTPSAYGAVGGRSG 358
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 380 (138.8 bits), Expect = 1.9e-43, Sum P(3) = 1.9e-43
Identities = 71/159 (44%), Positives = 101/159 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVIQ 65
KLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 66 EKHNIDGRMVEAKKAVPRDDQIVLNRXXXX--XXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR ++ K PR Q R ++ KIFVGG+ E++ +
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELR 120
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
+YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 159
Score = 227 (85.0 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 61/189 (32%), Positives = 90/189 (47%)
Query: 39 KDRNTGRARGFGFVVFADPAVAEIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXX--X 96
K N R GF + V ++ H +DGR ++ K PR Q R
Sbjct: 35 KTTNQSRGFGFVKFKDPN-CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQK 93
Query: 97 XXXXXXXRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
++ KIFVGG+ E++ ++YF +FG +T+VV++YD QRPRGFGFIT++
Sbjct: 94 GSRSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 153
Query: 157 EEAVDK---------------VKRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGY 201
E++VD+ VKRA P++ S T P G +G + S NG+
Sbjct: 154 EQSVDQAVNMHFHDIMGKKVEVKRAEPRD-SKSQTPGPPGASQWGSRIMPSAANGWAGQP 212
Query: 202 TPSTVGGYG 210
P+ GYG
Sbjct: 213 PPTWQQGYG 221
Score = 175 (66.7 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 2 QSDNGK---LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP- 57
+SDN K +F+GGI + E L+EYF +G V E V++ D R RGFGF+ F D
Sbjct: 96 RSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 155
Query: 58 AVAEIVIQEKHNIDGRMVEAKKAVPRDDQ 86
+V + V H+I G+ VE K+A PRD +
Sbjct: 156 SVDQAVNMHFHDIMGKKVEVKRAEPRDSK 184
Score = 133 (51.9 bits), Expect = 4.0e-09, Sum P(3) = 4.0e-09
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V V +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 167 VPKEL 171
P L
Sbjct: 61 RPHTL 65
Score = 61 (26.5 bits), Expect = 1.9e-43, Sum P(3) = 1.9e-43
Identities = 24/74 (32%), Positives = 32/74 (43%)
Query: 162 KVKRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYT--------QGYTPS--------T 205
+VKRA P++ S T P G +G + S NG+ QGY P
Sbjct: 174 EVKRAEPRD-SKSQTPGPPGASQWGSRIMPSAANGWAGQPPPTWQQGYGPQGMWVPAGQA 232
Query: 206 VGGYGLRMDGRFSP 219
+GGYG GR +P
Sbjct: 233 IGGYGPPPPGRGAP 246
Score = 45 (20.9 bits), Expect = 1.9e-43, Sum P(3) = 1.9e-43
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 357 FGYGSGDNSFGLGAGGYGRNP----GTTLAQSSSFAASNGGY 394
FGYG + FG G + P G ++ SS A G+
Sbjct: 341 FGYGQDLSGFGQGFSDPSQQPPPYGGPSVQPSSGPPAGGSGF 382
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 369 (135.0 bits), Expect = 3.0e-43, Sum P(3) = 3.0e-43
Identities = 69/158 (43%), Positives = 103/158 (65%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ 65
GK+FIGG+ DT ++F YGE+ ++VIM+DR+TG+ RGFGF+ FADP+V + VI+
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 66 EKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H I+G+ VE K+ +P+ +T+KIFVGG+ STVTE + K +
Sbjct: 79 DTHVINGKQVEIKRTIPKG----------AGGNQSKDIKTKKIFVGGIPSTVTEDELKDF 128
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F ++G + + V+ DH T R RGFGF+ +DSEE VD++
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
Score = 168 (64.2 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 36/87 (41%), Positives = 53/87 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GGI E+ LK++F+ YG VVE +++D T R+RGFGFV+F V + ++ +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 67 KHNID--GRMVEAKKAVPRDDQIVLNR 91
+ ID VE KKA P+ LNR
Sbjct: 170 GNMIDMADTQVEIKKAEPKKS---LNR 193
Score = 61 (26.5 bits), Expect = 3.0e-43, Sum P(3) = 3.0e-43
Identities = 17/50 (34%), Positives = 19/50 (38%)
Query: 174 GPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG----LRMDGRFSP 219
GP GGY YG V G Y ++GGY L RF P
Sbjct: 237 GPASRYAGGYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGP 286
Score = 61 (26.5 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 359 YGSGDNSFGLGA-GGYGRNPGTTLAQSSSFAASNGGYDG 396
+G G N++G G+ GGY P L SS F G+ G
Sbjct: 257 FGGGYNNYGGGSLGGYRNEP--PLGYSSRFGPYGSGFGG 293
Score = 54 (24.1 bits), Expect = 3.0e-43, Sum P(3) = 3.0e-43
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 358 GYGSGDNSFGLGAGG--YGRN-PGTTLAQSSSFAASNGGYDG 396
GY S +G G GG YGR G L GGY G
Sbjct: 279 GYSSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGYGG 320
Score = 53 (23.7 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 174 GPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
GP S GG YG ++L GY +G GGYG
Sbjct: 285 GPYGSGFGGEGYGRGGEGAYL-GYPRGGGEG-YGGYG 319
Score = 51 (23.0 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
Y S +G GGYG PG + + GGY
Sbjct: 211 YASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAGGY 246
Score = 48 (22.0 bits), Expect = 4.7e-41, Sum P(3) = 4.7e-41
Identities = 24/102 (23%), Positives = 30/102 (29%)
Query: 179 PLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRFSPVAXXXXXXXXXXXXXXXXX 238
P GG+ G + + G GGYG G P
Sbjct: 217 PYGGFDGGYGHPPGPIRSHG-GPASRYAGGYGYGR-GSVGPEFGGGYNNYGGGSLGGYRN 274
Query: 239 IEP-GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
P G + FG + YGRG Y+G P G G
Sbjct: 275 EPPLGYSSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYG 316
Score = 46 (21.3 bits), Expect = 2.1e-42, Sum P(3) = 2.1e-42
Identities = 16/39 (41%), Positives = 17/39 (43%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GY G G G GGYG PG A S G Y+G
Sbjct: 306 GYPRGG---GEGYGGYG-GPGYGGAYESG--GPGGSYEG 338
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 389 (142.0 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 88/221 (39%), Positives = 127/221 (57%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ 65
GK+F+GG++ +T ++F YGE+ ++VIMKDR TG+ RGFGFV +AD +V + VIQ
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 66 EKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H I G+ VE K+ +PR +T+KIFVGG+ S+V + +FK++
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSM------------SSNDFKTKKIFVGGIPSSVDDDEFKEF 149
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD----------------KVKRAVPK 169
F QFG + + +M DH+T R RGFGF+TY+SE+ VD ++K+A PK
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Query: 170 ELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
+ P +P +G SR N F GY GY GGYG
Sbjct: 210 K--PNSVTTP--SKRFGDSRSN-FGGGYGDGYGGGHGGGYG 245
Score = 73 (30.8 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 17/39 (43%), Positives = 18/39 (46%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GY G S G G GGYG PG S+ GGY G
Sbjct: 305 GYNRGGYSMG-GGGGYGGGPGDMYG--GSYGEPGGGYGG 340
Score = 63 (27.2 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAAS-NGGYDG 396
FG G GD G GGYG PG + +GGY G
Sbjct: 228 FGGGYGDGYGGGHGGGYG-GPGGPYKSGGGYGGGRSGGYGG 267
Score = 61 (26.5 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 16/44 (36%), Positives = 18/44 (40%)
Query: 358 GYGSGDNSFG-LGAGGYGRNPGT-----TLAQSSSFAASNGGYD 395
GYG FG G GGYG G L S + GGY+
Sbjct: 264 GYGGYGGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGYN 307
Score = 50 (22.7 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFG-----LGAGGYGRNPGTTLAQSSSFAASNGGYD 395
GYG S+G G GGYG G A + GGYD
Sbjct: 337 GYGGPSGSYGGGYGSSGIGGYGGGMGG--AGGGGYRGG-GGYD 376
Score = 48 (22.0 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 357 FGYGSGD---NSFGLGAGGYGRNPGTTLAQ--SSSFAASNGGYDG 396
+G G GD S+G GGYG G+ SS GG G
Sbjct: 319 YGGGPGDMYGGSYGEPGGGYGGPSGSYGGGYGSSGIGGYGGGMGG 363
Score = 46 (21.3 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 359 YGSGDNSFGLGAGGYGR 375
YG G G G GG GR
Sbjct: 401 YGGGGGRGGYGGGGSGR 417
Score = 46 (21.3 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G G + G GAGG G G+ GG G
Sbjct: 379 GVGGG-GAGGYGAGGGGNGGGSFYGGGGGRGGYGGGGSG 416
Score = 45 (20.9 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
GYG G G G GGY G + A GGY
Sbjct: 356 GYGGGMG--GAGGGGYRGGGGYDMGGVGGGGA--GGY 388
Score = 45 (20.9 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGG-YDGVFAD 400
GY SG +G G GGY R G ++ + G Y G + +
Sbjct: 294 GY-SG--RYGGGGGGYNRG-GYSMGGGGGYGGGPGDMYGGSYGE 333
Score = 44 (20.5 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG + G GGYG G + GGY G
Sbjct: 243 GYGGPGGPYKSG-GGYG---GGRSGGYGGYGGEFGGYGG 277
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 386 (140.9 bits), Expect = 6.9e-42, Sum P(3) = 6.9e-42
Identities = 72/160 (45%), Positives = 102/160 (63%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVI 64
GKLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 65 QEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXX--XXXXRTRKIFVGGLASTVTESDF 122
H +DGR ++ K PR Q R ++ KIFVGG+ E++
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Score = 175 (66.7 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E L+EYF +G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 IVIQEKHNIDGRMVEAKKAVPRDDQ 86
V H+I G+ VE K+A PRD +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 133 (51.9 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V V +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 167 VPKEL 171
P L
Sbjct: 71 RPHTL 75
Score = 48 (22.0 bits), Expect = 6.9e-42, Sum P(3) = 6.9e-42
Identities = 22/73 (30%), Positives = 29/73 (39%)
Query: 162 KVKRAVP---KELSPGPTRSPLGGYHYGLSRVNSFLNG----YTQGYTPS--------TV 206
+VKRA P K +PG + G S N + + QGY P +
Sbjct: 184 EVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAGQAI 243
Query: 207 GGYGLRMDGRFSP 219
GGYG GR +P
Sbjct: 244 GGYGPPPAGRGAP 256
Score = 37 (18.1 bits), Expect = 6.9e-42, Sum P(3) = 6.9e-42
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 357 FGYGSGDNSFGLGAGGYGRNP----GTTLAQSSSFAASNGGY 394
+GYG + FG G + P G ++ S A G+
Sbjct: 349 YGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGF 390
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 386 (140.9 bits), Expect = 6.9e-42, Sum P(3) = 6.9e-42
Identities = 72/160 (45%), Positives = 102/160 (63%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVI 64
GKLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 65 QEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXX--XXXXRTRKIFVGGLASTVTESDF 122
H +DGR ++ K PR Q R ++ KIFVGG+ E++
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Score = 175 (66.7 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E L+EYF +G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 IVIQEKHNIDGRMVEAKKAVPRDDQ 86
V H+I G+ VE K+A PRD +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 133 (51.9 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V V +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 167 VPKEL 171
P L
Sbjct: 71 RPHTL 75
Score = 48 (22.0 bits), Expect = 6.9e-42, Sum P(3) = 6.9e-42
Identities = 22/73 (30%), Positives = 29/73 (39%)
Query: 162 KVKRAVP---KELSPGPTRSPLGGYHYGLSRVNSFLNG----YTQGYTPS--------TV 206
+VKRA P K +PG + G S N + + QGY P +
Sbjct: 184 EVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAGQAI 243
Query: 207 GGYGLRMDGRFSP 219
GGYG GR +P
Sbjct: 244 GGYGPPPAGRGAP 256
Score = 37 (18.1 bits), Expect = 6.9e-42, Sum P(3) = 6.9e-42
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 357 FGYGSGDNSFGLGAGGYGRNP----GTTLAQSSSFAASNGGY 394
+GYG + FG G + P G ++ S A G+
Sbjct: 349 YGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGF 390
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 418 (152.2 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 87/221 (39%), Positives = 128/221 (57%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ 65
GKLF+GG+ W T +E L+ YFS YGEVV+ VIMKD++T ++RGFGFV F DP V+
Sbjct: 11 GKLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLD 70
Query: 66 EK-HNIDGRMVEAKKAVPRDDQIVLNRXXXX-XXXXXXXXRTRKIFVGGLASTVTESDFK 123
K HN+DGR ++ K PR Q R +++KIFVGG+ E++ +
Sbjct: 71 TKPHNLDGRNIDPKPCTPRGMQPEKTRTKDGWKGSKSDSNKSKKIFVGGIPHNCGEAELR 130
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV----------KRAVPKELSP 173
YF++FG +T+VV++YD QRPRGFGFIT+++E++VD+ K+ K+ P
Sbjct: 131 DYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKAEP 190
Query: 174 GPTRSP----LGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
+++P LG +G + S NG+ P+ YG
Sbjct: 191 RDSKAPAPGQLGANQWGPRAIISAANGWAAQPAPTWQQSYG 231
Score = 41 (19.5 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 369 GAGGYGRNPGTTLAQSSSFAA 389
GAG G P TT +Q S AA
Sbjct: 319 GAGPLGFAPATTPSQDLSKAA 339
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 379 (138.5 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 71/159 (44%), Positives = 101/159 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVIQ 65
KLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 66 EKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXX--XXXXRTRKIFVGGLASTVTESDFK 123
H +DGR ++ K PR Q R ++ KIFVGG+ E++ +
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 120
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
+YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 159
Score = 175 (66.7 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E L+EYF +G V E V++ D R RGFGF+ F D +V +
Sbjct: 100 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 159
Query: 62 IVIQEKHNIDGRMVEAKKAVPRDDQ 86
V H+I G+ VE K+A PRD +
Sbjct: 160 AVNMHFHDIMGKKVEVKRAEPRDSK 184
Score = 135 (52.6 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 39/121 (32%), Positives = 52/121 (42%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV--- 163
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V V
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 164 ------------KRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGL 211
K P+ + P TR P G+ G NS N G P G L
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTR-PKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 119
Query: 212 R 212
R
Sbjct: 120 R 120
Score = 49 (22.3 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 22/74 (29%), Positives = 30/74 (40%)
Query: 162 KVKRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYT--------QGYTPS--------T 205
+VKRA P++ P G +G V + NG+ QGY P
Sbjct: 174 EVKRAEPRDSKSQAPGQP-GASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQA 232
Query: 206 VGGYGLRMDGRFSP 219
+GGYG GR +P
Sbjct: 233 IGGYGPPPAGRGAP 246
Score = 38 (18.4 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 357 FGYGSGDNSFGLGAGGYGRNP----GTTLAQSSSFAASNGGY 394
+GYG SFG G + P G ++ S A G+
Sbjct: 339 YGYGQDLASFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGF 380
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 396 (144.5 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 78/161 (48%), Positives = 104/161 (64%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI 62
S GKLF+GG+SW+T E YF +GEVV++VIM DR TG RGFGFV FAD AVAE
Sbjct: 63 SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122
Query: 63 VIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDF 122
V++E H ID R V+ K+ +PR D+ +TRKIFVGGL + E +
Sbjct: 123 VLEEDHVIDDRKVDLKRTLPRGDK---------DTDIKAVSKTRKIFVGGLPPLLEEDEL 173
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
K YF +G I + +MYDH+T R RGFGF+T+ +E++VD++
Sbjct: 174 KNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRL 214
Score = 165 (63.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVF-ADPAVAE 61
S K+F+GG+ E+ LK YF YG+++E IM D +TGR+RGFGFV F + +V
Sbjct: 154 SKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDR 213
Query: 62 IVIQEK-HNIDGRMVEAKKAVPR 83
+ K H + + VE K+A P+
Sbjct: 214 LFSDGKVHELGDKQVEIKRAEPK 236
Score = 58 (25.5 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 357 FGYGSGDNSF--GLGAGGY---GRNPGTTLAQSSSFAASNG-GYDG 396
+GYG G F G GAGGY G G A + S+G G +G
Sbjct: 302 YGYGYGGQMFNMGYGAGGYSHMGSGYGVAAAAAYGGGKSHGNGNNG 347
Score = 56 (24.8 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 364 NSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
+ +G G GGYG G ++ + F GGY
Sbjct: 271 SGYG-GYGGYGAYAGNSMVNPAGFYGYGGGY 300
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 406 (148.0 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 74/158 (46%), Positives = 109/158 (68%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIV 63
++GK+FIGG++W+T ++ LKEYFS +GEV E +M+D TGR+RGFGF+ F DP V
Sbjct: 108 EDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTV 167
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
+ ++H +DG++++ K+A+PRD+Q +T KIFVGG++ TE DFK
Sbjct: 168 MVKEHYLDGKIIDPKRAIPRDEQ----------------EKTSKIFVGGVSQEATEQDFK 211
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
++F QFG + D +M D +T RPRGFGF+T+DSE AV+
Sbjct: 212 QFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVE 249
Score = 189 (71.6 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q K+F+GG+S + E+ K++F +G V++A +M D++TGR RGFGFV F A E
Sbjct: 190 QEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVE 249
Query: 62 IVIQEKHNIDGRMVEAKKAVPR 83
+ I G+ +E KKA PR
Sbjct: 250 AALSRPLEILGKTIEVKKAQPR 271
Score = 133 (51.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
K+F+GGL T+ K+YF QFG + + VM D T R RGFGF+T+ + V+ V
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTV 167
Score = 42 (19.8 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 358 GYGSGDNSFGLGAGGYGRN-PGTTLAQSSSF 387
G GSG+ + G G GR PG + +F
Sbjct: 427 GNGSGNMNMGSNYAGGGRGGPGYNAHEQIAF 457
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 392 (143.0 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 77/162 (47%), Positives = 106/162 (65%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
+D GK+FIGG+SW T+ E L++YF YG++ EA++MKD T R+RGFGFV F+DP +V +
Sbjct: 26 NDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDK 85
Query: 62 IVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESD 121
++ Q H +DG+ V+ K A PR RT+KIFVGGL++ T D
Sbjct: 86 VLTQGTHELDGKKVDPKVAFPR------------RAHPKMVTRTKKIFVGGLSAPTTLED 133
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
K YF+QFG I D ++M+D T R RGFGF+T+ SE+ VDKV
Sbjct: 134 VKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKV 175
Score = 174 (66.3 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ- 65
K+F+GG+S T E +K YF +G + +A++M D+ T R RGFGFV F V + V +
Sbjct: 119 KIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEI 178
Query: 66 EKHNIDGRMVEAKKAVPRDDQIVLN 90
H I+ +MVE KKA P++ + N
Sbjct: 179 HFHEINNKMVECKKAQPKEVMLPAN 203
Score = 46 (21.3 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 376 NPGTTLAQSSSFAASNGGY 394
+PG T+ SS AA N GY
Sbjct: 316 SPGPTIDMYSSAAADNVGY 334
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 385 (140.6 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 72/160 (45%), Positives = 102/160 (63%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVI 64
GKLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 65 QEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXX--XXXXRTRKIFVGGLASTVTESDF 122
H +DGR ++ K PR Q R ++ KIFVGG+ E++
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Score = 175 (66.7 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E L+EYF +G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 IVIQEKHNIDGRMVEAKKAVPRDDQ 86
V H+I G+ VE K+A PRD +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 135 (52.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 39/121 (32%), Positives = 52/121 (42%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV--- 163
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 164 ------------KRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGL 211
K P+ + P TR P G+ G NS N G P G L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTR-PKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 212 R 212
R
Sbjct: 130 R 130
Score = 49 (22.3 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 22/74 (29%), Positives = 30/74 (40%)
Query: 162 KVKRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYT--------QGYTPS--------T 205
+VKRA P++ P G +G V + NG+ QGY P
Sbjct: 184 EVKRAEPRDSKSQAPGQP-GASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQA 242
Query: 206 VGGYGLRMDGRFSP 219
+GGYG GR +P
Sbjct: 243 IGGYGPPPAGRGAP 256
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 385 (140.6 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 72/160 (45%), Positives = 102/160 (63%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVI 64
GKLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 65 QEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXX--XXXXRTRKIFVGGLASTVTESDF 122
H +DGR ++ K PR Q R ++ KIFVGG+ E++
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Score = 175 (66.7 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E L+EYF +G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 IVIQEKHNIDGRMVEAKKAVPRDDQ 86
V H+I G+ VE K+A PRD +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 135 (52.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 39/121 (32%), Positives = 52/121 (42%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV--- 163
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 164 ------------KRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGL 211
K P+ + P TR P G+ G NS N G P G L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTR-PKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 212 R 212
R
Sbjct: 130 R 130
Score = 49 (22.3 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 22/74 (29%), Positives = 30/74 (40%)
Query: 162 KVKRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYT--------QGYTPS--------T 205
+VKRA P++ P G +G V + NG+ QGY P
Sbjct: 184 EVKRAEPRDSKSQAPGQP-GASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQA 242
Query: 206 VGGYGLRMDGRFSP 219
+GGYG GR +P
Sbjct: 243 IGGYGPPPAGRGAP 256
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 385 (140.6 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 72/160 (45%), Positives = 102/160 (63%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVI 64
GKLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 65 QEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXX--XXXXRTRKIFVGGLASTVTESDF 122
H +DGR ++ K PR Q R ++ KIFVGG+ E++
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Score = 175 (66.7 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E L+EYF +G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 IVIQEKHNIDGRMVEAKKAVPRDDQ 86
V H+I G+ VE K+A PRD +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 135 (52.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 39/121 (32%), Positives = 52/121 (42%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV--- 163
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 164 ------------KRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGL 211
K P+ + P TR P G+ G NS N G P G L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTR-PKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 212 R 212
R
Sbjct: 130 R 130
Score = 49 (22.3 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 22/74 (29%), Positives = 30/74 (40%)
Query: 162 KVKRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYT--------QGYTPS--------T 205
+VKRA P++ P G +G V + NG+ QGY P
Sbjct: 184 EVKRAEPRDSKSQAPGQP-GASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQA 242
Query: 206 VGGYGLRMDGRFSP 219
+GGYG GR +P
Sbjct: 243 IGGYGPPPAGRGAP 256
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 392 (143.0 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 74/161 (45%), Positives = 104/161 (64%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVI 64
GKLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 65 QEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXX---XXXXRTRKIFVGGLASTVTESD 121
H +DGR ++ K PR Q +R R+ KIFVGG+ E++
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETE 129
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
K+YF++FG +T+VV++YD QRPRGFGFIT++ E++VD+
Sbjct: 130 LKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 170
Score = 221 (82.9 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 57/146 (39%), Positives = 81/146 (55%)
Query: 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK- 162
R+ KIFVGG+ E++ K+YF++FG +T+VV++YD QRPRGFGFIT++ E++VD+
Sbjct: 112 RSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 171
Query: 163 --------------VKRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYT-------QGY 201
VKRA P++ S T P G +G + S NG+T QGY
Sbjct: 172 VNMHFHDIMGKKVEVKRAEPRD-SKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGY 230
Query: 202 TPS--------TVGGYGLRMDGRFSP 219
+P T+GGYG + GR P
Sbjct: 231 SPQGMWMPTGQTIGGYG-QPAGRGGP 255
Score = 178 (67.7 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E LKEYF+ +G V E V++ D R RGFGF+ F D +V +
Sbjct: 111 SRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 170
Query: 62 IVIQEKHNIDGRMVEAKKAVPRDDQ 86
V H+I G+ VE K+A PRD +
Sbjct: 171 AVNMHFHDIMGKKVEVKRAEPRDSK 195
Score = 133 (51.9 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V V +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 167 VPKEL 171
P L
Sbjct: 71 RPHTL 75
Score = 38 (18.4 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 168 PKELSPGPTRSPLGGYHYG 186
P+ PG P GY YG
Sbjct: 276 PQGFPPGYATPPPFGYGYG 294
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 392 (143.0 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 87/222 (39%), Positives = 124/222 (55%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVI 64
GKLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 65 QEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXX-XXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR ++ K PR Q R ++ KIFVGG+ E++ +
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWKGPRSDSSKSNKIFVGGIPHNCGETELR 129
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV----------KRAVPKELSP 173
+YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ K+ K P
Sbjct: 130 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 189
Query: 174 GPTRSPL----GGYHYGLSRVN-SFLNGYTQGYTPSTVGGYG 210
+++ G +G SRV S NG+ P+ GYG
Sbjct: 190 RDSKNQAPGQPGASQWG-SRVAPSAANGWAGQPPPTWQQGYG 230
Score = 175 (66.7 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E L+EYF +G V E V++ D R RGFGF+ F D +V +
Sbjct: 109 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 168
Query: 62 IVIQEKHNIDGRMVEAKKAVPRDDQ 86
V H+I G+ VE K+A PRD +
Sbjct: 169 AVNMHFHDIMGKKVEVKRAEPRDSK 193
Score = 48 (22.0 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
Identities = 22/73 (30%), Positives = 29/73 (39%)
Query: 162 KVKRAVP---KELSPGPTRSPLGGYHYGLSRVNSFLNG----YTQGYTPS--------TV 206
+VKRA P K +PG + G S N + + QGY P +
Sbjct: 183 EVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAGQAI 242
Query: 207 GGYGLRMDGRFSP 219
GGYG GR +P
Sbjct: 243 GGYGPPPAGRGAP 255
Score = 37 (18.1 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 357 FGYGSGDNSFGLGAGGYGRNP----GTTLAQSSSFAASNGGY 394
+GYG + FG G + P G ++ S A G+
Sbjct: 348 YGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGF 389
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 382 (139.5 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 82/227 (36%), Positives = 134/227 (59%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIV 63
++GK+FIGG++W+T ++ L++YF +GEV++ +M+D TGR+RGFGF+ F +P V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
+ ++H++DG++++ K+A+PR++Q +T K+FVGG+ TE +F+
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQ----------------EKTAKMFVGGVPGDCTEEEFR 264
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD---------------KVKRAVP 168
+F+QFG + D +M D +T RPRGFGF+TY++E AV+ +VKRA P
Sbjct: 265 NFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATP 324
Query: 169 K-ELSPGPTRSPLGGYHYGLSRVNSF-LNGYTQGYTPSTVGGYGLRM 213
K L R GYH + + +N Y G TP+ + Y +M
Sbjct: 325 KASLRDSHDRHQ-HGYHGNANPYYAQNMNMYG-GMTPAMMAQYYRQM 369
Score = 181 (68.8 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q K+F+GG+ D EE + +F+ +G V++A +M D++TGR RGFGFV + + + E
Sbjct: 243 QEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302
Query: 62 IVIQEKH-NIDGRMVEAKKAVPR 83
+ + + I G+ VE K+A P+
Sbjct: 303 ATMSQPYITIHGKPVEVKRATPK 325
Score = 43 (20.2 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 367 GLGAGGY-GRNPG 378
G GGY GRNPG
Sbjct: 433 GSSRGGYHGRNPG 445
Score = 43 (20.2 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 259 YGRGLSPYYIGNPNRYG 275
Y +PYY N N YG
Sbjct: 339 YHGNANPYYAQNMNMYG 355
Score = 43 (20.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 138 MYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPG-PTRSPLGGYH 184
M D Q+ +G + +D + VP SP P+ S GGYH
Sbjct: 397 MADWQQQQQQGAAY--FDPSKMNQGTGDGVP--FSPSMPSGSSRGGYH 440
Score = 38 (18.4 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 374 GRNPGTTLAQSSSFAASNGGYDG 396
G G + S +S GGY G
Sbjct: 419 GTGDGVPFSPSMPSGSSRGGYHG 441
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 103/278 (37%), Positives = 145/278 (52%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D GK+FIGG+SW T+ + L++YFS +GE+ E ++M+D T R+RGFGFV FADPA +
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 IVI-QEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGL-ASTVTE 119
V+ Q H +D + ++ K A PR Q + RT+KIFVGGL A+TV E
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVE 124
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------K 164
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+KV K
Sbjct: 125 -DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
Query: 165 RAVPKELS-PGPTRSPLGGYHY---------GLSRVNSFLNGYTQGYTPSTVGGYGLRMD 214
+A PKE+ P TR G Y G+ +F+ Y +GY P YG +
Sbjct: 184 KAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFP 242
Query: 215 GRFSPVAXXXXXXXXXXXXXXXXXIEPGLNPSFGANAN 252
G F A P+FGA A+
Sbjct: 243 G-FPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPAS 279
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 98/237 (41%), Positives = 139/237 (58%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D GK+FIGG+SW T+ + L++YFS +GE+ E ++M+D T R+RGFGFV FADPA +
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 IVI-QEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGL-ASTVTE 119
V+ Q H +D + ++ K A PR Q + RT+KIFVGGL A+TV E
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVE 124
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------K 164
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+KV K
Sbjct: 125 -DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
Query: 165 RAVPKELS-PGPTRSPLGGYHYGLSRVNSFLNGYTQ-GYTPSTVGGYGLRMDGRFSP 219
+A PKE+ P TR G Y + ++F+ G GY P+ V YG G F+P
Sbjct: 184 KAQPKEVMFPPGTRGRARGLPYTM---DAFMLGMGMLGY-PNFVATYGRGYPG-FAP 235
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 369 (135.0 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 83/198 (41%), Positives = 115/198 (58%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEI 62
D K+FIGG+SW T +E L+EYF +GEV E ++M+D T R+RGFGFV F D A V ++
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 63 VIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDF 122
+ Q +H +D + ++ K A PR Q + RT+KIFVGGL+ T D
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDV 125
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV----------KRAVPKELS 172
K+YF+QFG + D ++M+D T R RGFGF+T++SE+ V+KV K K+
Sbjct: 126 KQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 173 PGPTRSPLGGYHYGLSRV 190
P SP G G SRV
Sbjct: 186 PKEVMSPTGSAR-GRSRV 202
Score = 44 (20.5 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 172 SPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDG 215
SPGP + L YG + +S ++ Y +P+ G+G + G
Sbjct: 312 SPGPM-AEL----YGAANQDSGVSSYISAASPAPSTGFGHSLGG 350
Score = 41 (19.5 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
YG G+G GY TT A S S+ GY F +
Sbjct: 205 YGMDAFMLGIGMLGYPGFQATTYA-SRSYTGLAPGYTYQFPE 245
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 361 (132.1 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 71/157 (45%), Positives = 99/157 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K FIGG+SWDT EE L +F YG +V+ IMKD TGR+RGFGF+ F D + ++++
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLKD 222
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
+H +DG++++ K+A+ ++DQ + KIFVGG+ VTE +F +F
Sbjct: 223 RHVLDGKLIDPKRAISKEDQ----------------EKVGKIFVGGIDPMVTEEEFDNFF 266
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
QFG I D +M D +T R RGFGF+TYDS AVDKV
Sbjct: 267 SQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKV 303
Score = 179 (68.1 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 33/83 (39%), Positives = 52/83 (62%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q GK+F+GGI EE +FS +G++++ +M D++TGR+RGFGFV + PA +
Sbjct: 242 QEKVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVD 301
Query: 62 IVIQEKH-NIDGRMVEAKKAVPR 83
V K+ + G+ +E K+A PR
Sbjct: 302 KVCVNKYLTLKGKAMEVKRAAPR 324
Score = 133 (51.9 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
+RK F+GGL+ TE +F ++G I D +M D T R RGFGF+T++ ++VD
Sbjct: 161 SRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVD 217
Score = 52 (23.4 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 155 DSEEAVDKVKRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQG--YTPSTVGG 208
+SE++ ++ + A+P GP R+P G Y GY +G Y P + GG
Sbjct: 422 ESEKSDEQARPAIPT----GPKRAPPTGPSYRGGGRGGGRGGYRRGRGYHPYSRGG 473
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 374 (136.7 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 71/163 (43%), Positives = 108/163 (66%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
+ ++ K+FIGG++WDT E+ L+EYF YG V + IMKD TGR+RGFGF+ F P+
Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+ V++ +H +DG++++ K+A+PRD+Q +T KIFVGG+ V
Sbjct: 214 DEVVKTQHILDGKVIDPKRAIPRDEQ----------------DKTGKIFVGGIGPDVRPK 257
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+F+++F Q+GTI D +M D +T + RGFGF+TYDS +AVD+V
Sbjct: 258 EFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 300
Score = 171 (65.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 33/86 (38%), Positives = 52/86 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q GK+F+GGI D + +E+FS +G +++A +M D++TG++RGFGFV + +
Sbjct: 239 QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 298
Query: 62 IVIQEKH-NIDGRMVEAKKAVPRDDQ 86
V Q K + R +E K+A PR Q
Sbjct: 299 RVCQNKFIDFKDRKIEIKRAEPRHMQ 324
Score = 38 (18.4 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 443 AKNSPGFVGGYSVNKRQSNRG 463
+ N+ G GG ++N+R N G
Sbjct: 327 SSNNGGNNGGNNMNRRGGNFG 347
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 368 (134.6 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 82/195 (42%), Positives = 114/195 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEIVIQ 65
K+FIGG+SW T +E L+EYF +GEV E ++M+D T R+RGFGFV F D A V +++ Q
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 66 EKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+H +D + ++ K A PR Q + RT+KIFVGGL+ T D K+Y
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDVKQY 108
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV----------KRAVPKELSPGP 175
F+QFG + D ++M+D T R RGFGF+T++SE+ V+KV K K+ P
Sbjct: 109 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 168
Query: 176 TRSPLGGYHYGLSRV 190
SP G G SRV
Sbjct: 169 VMSPTGSAR-GRSRV 182
Score = 44 (20.5 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 172 SPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDG 215
SPGP + L YG + +S ++ Y +P+ G+G + G
Sbjct: 292 SPGPM-AEL----YGAANQDSGVSSYISAASPAPSTGFGHSLGG 330
Score = 41 (19.5 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
YG G+G GY TT A S S+ GY F +
Sbjct: 185 YGMDAFMLGIGMLGYPGFQATTYA-SRSYTGLAPGYTYQFPE 225
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 367 (134.2 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 83/198 (41%), Positives = 114/198 (57%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEI 62
D K+FIGG+SW T +E L+EYF +GEV E ++M+D T R+RGFGFV F D A V ++
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 63 VIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDF 122
+ Q +H +D + ++ K A PR Q + RT+KIFVGGL+ T D
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDV 125
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV----------KRAVPKELS 172
K YF+QFG + D ++M+D T R RGFGF+T++SE+ V+KV K K+
Sbjct: 126 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 173 PGPTRSPLGGYHYGLSRV 190
P SP G G SRV
Sbjct: 186 PKEVMSPTGSAR-GRSRV 202
Score = 44 (20.5 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 172 SPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDG 215
SPGP + L YG + +S ++ Y +P+ G+G + G
Sbjct: 312 SPGPM-AEL----YGAANQDSGVSSYISAASPAPSTGFGHSLGG 350
Score = 41 (19.5 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
YG G+G GY TT A S S+ GY F +
Sbjct: 205 YGMDAFMLGIGMLGYPGFQATTYA-SRSYTGLAPGYTYQFPE 245
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 367 (134.2 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 83/198 (41%), Positives = 114/198 (57%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEI 62
D K+FIGG+SW T +E L+EYF +GEV E ++M+D T R+RGFGFV F D A V ++
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 63 VIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDF 122
+ Q +H +D + ++ K A PR Q + RT+KIFVGGL+ T D
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDV 125
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV----------KRAVPKELS 172
K YF+QFG + D ++M+D T R RGFGF+T++SE+ V+KV K K+
Sbjct: 126 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 173 PGPTRSPLGGYHYGLSRV 190
P SP G G SRV
Sbjct: 186 PKEVMSPTGSAR-GRSRV 202
Score = 44 (20.5 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 172 SPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDG 215
SPGP + L YG + +S ++ Y +P+ G+G + G
Sbjct: 312 SPGPM-AEL----YGAANQDSGVSSYISAASPAPSTGFGHSLGG 350
Score = 41 (19.5 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
YG G+G GY TT A S S+ GY F +
Sbjct: 205 YGMDAFMLGIGMLGYPGFQATTYA-SRSYTGLAPGYTYQFPE 245
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 367 (134.2 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 83/198 (41%), Positives = 114/198 (57%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEI 62
D K+FIGG+SW T +E L+EYF +GEV E ++M+D T R+RGFGFV F D A V ++
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 63 VIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDF 122
+ Q +H +D + ++ K A PR Q + RT+KIFVGGL+ T D
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDV 125
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV----------KRAVPKELS 172
K YF+QFG + D ++M+D T R RGFGF+T++SE+ V+KV K K+
Sbjct: 126 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 173 PGPTRSPLGGYHYGLSRV 190
P SP G G SRV
Sbjct: 186 PKEVMSPTGSAR-GRSRV 202
Score = 44 (20.5 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 172 SPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDG 215
SPGP + L YG + +S ++ Y +P+ G+G + G
Sbjct: 312 SPGPM-AEL----YGAANQDSGVSSYISAASPAPSTGFGHSLGG 350
Score = 41 (19.5 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
YG G+G GY TT A S S+ GY F +
Sbjct: 205 YGMDAFMLGIGMLGYPGFQATTYA-SRSYTGLAPGYTYQFPE 245
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 370 (135.3 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 74/161 (45%), Positives = 105/161 (65%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEI 62
D K+FIGG+SW T +E LK+YF +GEV E+++M+D T R+RGFGFV F D A V ++
Sbjct: 18 DPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKV 77
Query: 63 VIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDF 122
+ Q +H +D + ++ K A PR Q L RT+KIFVGGL+ T D
Sbjct: 78 LAQTRHELDSKTIDPKVAFPRRAQPKL------------VTRTKKIFVGGLSVNTTIEDV 125
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
K+YFDQFG + D ++M+D T R RGFGF+T+++E+ V+KV
Sbjct: 126 KQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKV 166
Score = 182 (69.1 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 36/79 (45%), Positives = 54/79 (68%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ- 65
K+F+GG+S +T E +K+YF +G+V +A++M D+ T R RGFGFV F + V E V +
Sbjct: 110 KIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 169
Query: 66 EKHNIDGRMVEAKKAVPRD 84
H I+ +MVE KKA P++
Sbjct: 170 HFHEINNKMVECKKAQPKE 188
Score = 140 (54.3 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+GGL+ T+ K YF +FG + + +VM D T+R RGFGF+T+ + VDKV
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 167 VPKEL 171
EL
Sbjct: 81 TRHEL 85
Score = 40 (19.1 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
YG G+G GY TT A S+ + GY F +
Sbjct: 205 YGMDAFMLGIGMLGYPGFQATTYA-GRSYTSLTPGYTYQFPE 245
Score = 38 (18.4 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 172 SPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDG 215
SPGP + L YG + S ++ Y +P+ G+ + G
Sbjct: 299 SPGPM-ADL----YGTANQESAVSSYLSAASPAPSTGFSHSLGG 337
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 315 (115.9 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 62/158 (39%), Positives = 93/158 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T ++ L+ +F +G + + V+MKD NT R+RGFGFV ++ +
Sbjct: 34 KLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMDA 93
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D +KIFVGG+ E+ + Y
Sbjct: 94 RPHKVDGRLVEPKRAVSREDS----------SKPFAHTTVKKIFVGGIKDDTEENHLRDY 143
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
FDQFG I V +M DH T RGF F+T+D ++VD++
Sbjct: 144 FDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRI 181
Score = 175 (66.7 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF +G++ IM D TG RGF FV F D +V IVIQ
Sbjct: 125 KIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQ 184
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 185 KYHTVNGHNCEVRKALSKQE 204
Score = 168 (64.2 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 31/66 (46%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY S + V+
Sbjct: 33 RKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMD 92
Query: 166 AVPKEL 171
A P ++
Sbjct: 93 ARPHKV 98
Score = 64 (27.6 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 358 GYGSG----DNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG G +N+ G G GGYG G ++ N GY G
Sbjct: 266 GYGGGGDCYNNNNGFGGGGYGGGGGNGGGSPGNYGG-NRGYGG 307
Score = 61 (26.5 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG G N+FG G GG G G +++ GGY G
Sbjct: 249 FGRGGRGNNFGGGGGGGGYGGGGDCYNNNN-GFGGGGYGG 287
Score = 56 (24.8 bits), Expect = 9.4e-36, Sum P(3) = 9.4e-36
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 358 GYGSGDNSFGLGAGGYGR-NPGTTLAQSSSFAASNGG 393
GYG G NS G G GGY N G +F GG
Sbjct: 321 GYGGG-NSGG-GGGGYNNYNNGNGNFGGGNFGGGGGG 355
Score = 56 (24.8 bits), Expect = 9.4e-36, Sum P(3) = 9.4e-36
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASN--GGYDG 396
GYG G + G G YG N G N GGY G
Sbjct: 284 GYGGGGGNGGGSPGNYGGNRGYGGGGGGGHGYGNQGGGYGG 324
Score = 54 (24.1 bits), Expect = 1.5e-35, Sum P(3) = 1.5e-35
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG 378
GYG G + G G GYG G
Sbjct: 398 GYGGGSSGSGGGGSGYGGGSG 418
Score = 53 (23.7 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGAGGYGR-NPGTTLAQSSSFAASNGGYDG 396
G G G + +G GGYG N G +++ NG + G
Sbjct: 307 GGGGGGHGYGNQGGGYGGGNSGGGGGGYNNYNNGNGNFGG 346
Score = 48 (22.0 bits), Expect = 6.4e-35, Sum P(3) = 6.4e-35
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G G NS G GG + G +Q S++ G + G
Sbjct: 352 GGGGGGNS---GGGGNYNDFGNYNSQQSNYGPMKGNFGG 387
Score = 46 (21.3 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
GYG G G G GYG N G +S GGY+
Sbjct: 304 GYGGG----GGGGHGYG-NQGGGYGGGNS-GGGGGGYN 335
Score = 44 (20.5 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGG--YDGVF 398
G G G G GG G ++ F GG DG F
Sbjct: 209 GRGGGGGGGGGGGNFNRYGNNGGYNNDFGGGGGGGNRDGYF 249
Score = 42 (19.8 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 358 GYGS-GDNSFGLGAGGYGRNPG 378
G G+ G +FG G GG G + G
Sbjct: 340 GNGNFGGGNFGGGGGGGGNSGG 361
Score = 42 (19.8 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 358 GYGSGDNSFG-LGAGGYGRNPG 378
G G G N G G GG G N G
Sbjct: 238 GGGGGGNRDGYFGRGGRGNNFG 259
Score = 41 (19.5 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 269 GNPNRYGSPLGYD 281
GN NRYG+ GY+
Sbjct: 221 GNFNRYGNNGGYN 233
Score = 40 (19.1 bits), Expect = 4.3e-34, Sum P(3) = 4.3e-34
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 358 GYGSGDNSFGLGAGG 372
G G G + +G G+GG
Sbjct: 405 GSGGGGSGYGGGSGG 419
Score = 40 (19.1 bits), Expect = 4.3e-34, Sum P(3) = 4.3e-34
Identities = 16/40 (40%), Positives = 16/40 (40%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG G G NS G GGYG SS GY G
Sbjct: 385 FG-GGGRNSGPYG-GGYGGG-------SSGSGGGGSGYGG 415
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 95/236 (40%), Positives = 137/236 (58%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VA 60
Q D GK+FIGG+SW T+ + L++YFS +GE+ E ++M+D T R+RGFGFV FAD A V
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVD 76
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGL-ASTVTE 119
+++ Q H +D + ++ K A PR Q + RT+KIFVGGL A+TV E
Sbjct: 77 KVLAQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVE 124
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------K 164
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+KV K
Sbjct: 125 -DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
Query: 165 RAVPKELS-PGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRFSP 219
+A PKE+ P TR G Y + ++F+ G P+ V YG G F+P
Sbjct: 184 KAQPKEVMFPPGTRGRARGLPYTM---DAFMLGMGMLSYPNIVATYGRGYTG-FAP 235
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 361 (132.1 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 82/198 (41%), Positives = 114/198 (57%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEI 62
D K+FIGG+SW T +E L+EYF +GEV E ++M+D T R+RGFGFV F D A V ++
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 63 VIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDF 122
+ Q +H +D + ++ K A PR Q + RT+KIFVGGL+ T D
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDV 125
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV----------KRAVPKELS 172
K+YF+QF + D ++M+D T R RGFGF+T++SE+ V+KV K K+
Sbjct: 126 KQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 173 PGPTRSPLGGYHYGLSRV 190
P SP G G SRV
Sbjct: 186 PKEVMSPTGSAR-GRSRV 202
Score = 44 (20.5 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 172 SPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDG 215
SPGP + L YG + +S ++ Y +P+ G+G + G
Sbjct: 312 SPGPM-AEL----YGAANQDSGVSSYISAASPAPSTGFGHSLGG 350
Score = 41 (19.5 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
YG G+G GY TT A S S+ GY F +
Sbjct: 205 YGMDAFMLGIGMLGYPGFQATTYA-SRSYTGLAPGYTYQFPE 245
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 329 (120.9 bits), Expect = 4.6e-36, Sum P(3) = 4.6e-36
Identities = 67/163 (41%), Positives = 101/163 (61%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VA 60
+ D GK+F+GG+SWDT+++ LK+YFS +GEV + I D NTGR+RGFGF++F +P+ V
Sbjct: 91 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVD 150
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H +DGR ++ KKA+ + V +KIFVGGL TE
Sbjct: 151 KVLAQKEHRLDGRQIDPKKAMAMKKEPV-----------------KKIFVGGLNPETTEE 193
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG I + + D + + RGF FIT+ EEAV K+
Sbjct: 194 RIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKI 236
Score = 140 (54.3 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 23/67 (34%), Positives = 43/67 (64%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG++ +T EER++EYF +GE+ + D + + RGF F+ F + + ++++
Sbjct: 180 KIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEK 239
Query: 67 K-HNIDG 72
K HN+ G
Sbjct: 240 KYHNVSG 246
Score = 45 (20.9 bits), Expect = 4.6e-36, Sum P(3) = 4.6e-36
Identities = 20/62 (32%), Positives = 25/62 (40%)
Query: 157 EEAVDKVKRAVPKEL-SPGPTRSPLGGYHYGLSRV------NSFLNGY-TQGYTPSTVGG 208
+E + ++K A PKE+ GG G R N N Y QGY GG
Sbjct: 253 KEGLCEIKIAQPKEVYQQQQYGGRFGGGGRGRGRGGQGQNWNQGYNNYWNQGYGNQGYGG 312
Query: 209 YG 210
YG
Sbjct: 313 YG 314
Score = 41 (19.5 bits), Expect = 4.6e-36, Sum P(3) = 4.6e-36
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSS 385
GYG D + G YG+ P QSS
Sbjct: 337 GYGGYD--YNQGNTSYGKTPRRGAHQSS 362
Score = 40 (19.1 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 359 YGS--GDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
YG G G G GG G+N + N GY G
Sbjct: 273 YGGRFGGGGRGRGRGGQGQNWNQGYNNYWNQGYGNQGYGG 312
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 84/186 (45%), Positives = 118/186 (63%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M D KLF+GGI+ +T+EE LK+YFS YG V+EAV+ K++ TG+ RGFGFV FA+
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDD--------QIV------LNRXXXXXXXXXXXXRTR 106
+++ H I G+ V+ +KA+ + + Q + +N RT+
Sbjct: 61 VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
KIFVGGL+S TE +FK YF++FG TDVVVM+D T RPRGFGF+TYDSE++V+ V ++
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 167 VPKELS 172
ELS
Sbjct: 181 NFHELS 186
Score = 220 (82.5 bits), Expect = 3.4e-16, P = 3.4e-16
Identities = 48/82 (58%), Positives = 58/82 (70%)
Query: 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV--- 160
RT+KIFVGGL+S TE +FK YF++FG TDVVVM+D T RPRGFGF+TYDSE++V
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVV 177
Query: 161 ---------DK---VKRAVPKE 170
DK VKRA+PKE
Sbjct: 178 MQSNFHELSDKRVEVKRAIPKE 199
Score = 178 (67.7 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S +T EE K YF +G + V+M D T R RGFGFV + E+V+Q
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 67 K-HNIDGRMVEAKKAVPRD 84
H + + VE K+A+P++
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 303 (111.7 bits), Expect = 7.4e-36, Sum P(3) = 7.4e-36
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 4.5e-16, Sum P(3) = 4.5e-16
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 5.1e-15, Sum P(3) = 5.1e-15
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 72 (30.4 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVF 398
GY G +G G GYG N G+ S S+ + N G G F
Sbjct: 259 GYSGGSRGYGSGGQGYG-NQGSGYGGSGSYDSYNNGGGGGF 298
Score = 62 (26.9 bits), Expect = 7.4e-36, Sum P(3) = 7.4e-36
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG GSG N FG G G Y + G QSS+F GG G
Sbjct: 298 FGGGSGSN-FG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 334
Score = 55 (24.4 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 358 GYG-SGDNSFGLGA-GGYGRN-PGTTLAQSSSFAASNGGY 394
GYG SGD G G GGYG PG + S + + GY
Sbjct: 236 GYGGSGDGYNGFGNDGGYGGGGPGYS-GGSRGYGSGGQGY 274
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 48 (22.0 bits), Expect = 7.4e-36, Sum P(3) = 7.4e-36
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 242 GLNPSFGANANFNSNLSYG--RGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLW 299
G N +FG NF+ +G RG Y G+ + Y G D +S +R +
Sbjct: 211 GGNDNFGRGGNFSGRGGFGGSRGGGGYG-GSGDGYNG-FGNDGGYGGGGPGYSGGSRG-Y 267
Query: 300 GNGG 303
G+GG
Sbjct: 268 GSGG 271
Score = 45 (20.9 bits), Expect = 4.3e-34, Sum P(3) = 4.3e-34
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSF 387
G GS D+ G GG+G G+ S+
Sbjct: 283 GSGSYDSYNNGGGGGFGGGSGSNFGGGGSY 312
Score = 45 (20.9 bits), Expect = 4.3e-34, Sum P(3) = 4.3e-34
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 358 GYGSGDNSFG---LGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYGSG +G G GG G F +G G
Sbjct: 266 GYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFG 307
Score = 44 (20.5 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 315 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 359
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 303 (111.7 bits), Expect = 7.4e-36, Sum P(3) = 7.4e-36
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 4.6e-16, Sum P(3) = 4.6e-16
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 72 (30.4 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAA-SNGGYDGVF 398
GY G +G G GYG N G+ S S+ + +NGG G F
Sbjct: 259 GYSGGSRGYGSGGQGYG-NQGSGYGGSGSYDSYNNGGGGGGF 299
Score = 62 (26.9 bits), Expect = 7.4e-36, Sum P(3) = 7.4e-36
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG GSG N FG G G Y + G QSS+F GG G
Sbjct: 299 FGGGSGSN-FG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 335
Score = 55 (24.4 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 358 GYG-SGDNSFGLGA-GGYGRN-PGTTLAQSSSFAASNGGY 394
GYG SGD G G GGYG PG + S + + GY
Sbjct: 236 GYGGSGDGYNGFGNDGGYGGGGPGYS-GGSRGYGSGGQGY 274
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 48 (22.0 bits), Expect = 7.4e-36, Sum P(3) = 7.4e-36
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 242 GLNPSFGANANFNSNLSYG--RGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLW 299
G N +FG NF+ +G RG Y G+ + Y G D +S +R +
Sbjct: 211 GGNDNFGRGGNFSGRGGFGGSRGGGGYG-GSGDGYNG-FGNDGGYGGGGPGYSGGSRG-Y 267
Query: 300 GNGG 303
G+GG
Sbjct: 268 GSGG 271
Score = 46 (21.3 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 358 GYG-SGD-NSF--GLGAGGYGRNPGTTLAQSSSF 387
GYG SG +S+ G G GG+G G+ S+
Sbjct: 280 GYGGSGSYDSYNNGGGGGGFGGGSGSNFGGGGSY 313
Score = 44 (20.5 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 316 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 360
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 303 (111.7 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 7.4e-16, Sum P(3) = 7.4e-16
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 8.4e-15, Sum P(3) = 8.4e-15
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 69 (29.3 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GY G +G G GYG N G+ S S+ + N G G
Sbjct: 259 GYSGGSRGYGSGGQGYG-NQGSGYGGSGSYDSYNNGGGG 296
Score = 60 (26.2 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG G S G GG + G QSS+F GG G
Sbjct: 298 GYGGGSGS-NFGGGGSYNDFGNYNNQSSNFGPMKGGNFG 335
Score = 56 (24.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
GYG G + G+ GYG Q S + S G YD
Sbjct: 252 GYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGS-GSYD 288
Score = 55 (24.4 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 358 GYG-SGDNSFGLGA-GGYGRN-PGTTLAQSSSFAASNGGY 394
GYG SGD G G GGYG PG + S + + GY
Sbjct: 236 GYGGSGDGYNGFGNDGGYGGGGPGYS-GGSRGYGSGGQGY 274
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 358 GYG-SGD-NSF--GLGAGGYGRNPGTTLAQSSSF 387
GYG SG +S+ G G GGYG G+ S+
Sbjct: 280 GYGGSGSYDSYNNGGGGGGYGGGSGSNFGGGGSY 313
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 48 (22.0 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 242 GLNPSFGANANFNSNLSYG--RGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLW 299
G N +FG NF+ +G RG Y G+ + Y G D +S +R +
Sbjct: 211 GGNDNFGRGGNFSGRGGFGGSRGGGGYG-GSGDGYNG-FGNDGGYGGGGPGYSGGSRG-Y 267
Query: 300 GNGG 303
G+GG
Sbjct: 268 GSGG 271
Score = 44 (20.5 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 316 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 360
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 303 (111.7 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 95
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 145
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 146 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 183
Score = 184 (69.8 bits), Expect = 9.5e-16, Sum P(3) = 9.5e-16
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 127 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 186
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 187 KYHTVNGHNCEVRKALSKQE 206
Score = 176 (67.0 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 35 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 94
Query: 166 AVPKEL 171
A P ++
Sbjct: 95 ARPHKV 100
Score = 69 (29.3 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GY G +G G GYG N G+ S S+ + N G G
Sbjct: 280 GYSGGSRGYGSGGQGYG-NQGSGYGGSGSYDSYNNGGGG 317
Score = 60 (26.2 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG G S G GG + G QSS+F GG G
Sbjct: 319 GYGGGSGS-NFGGGGSYNDFGNYNNQSSNFGPMKGGNFG 356
Score = 56 (24.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
GYG G + G+ GYG Q S + S G YD
Sbjct: 273 GYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGS-GSYD 309
Score = 55 (24.4 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 358 GYG-SGDNSFGLGA-GGYGRN-PGTTLAQSSSFAASNGGY 394
GYG SGD G G GGYG PG + S + + GY
Sbjct: 257 GYGGSGDGYNGFGNDGGYGGGGPGYS-GGSRGYGSGGQGY 295
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 230 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 267
Score = 50 (22.7 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 358 GYG-SGD-NSF--GLGAGGYGRNPGTTLAQSSSF 387
GYG SG +S+ G G GGYG G+ S+
Sbjct: 301 GYGGSGSYDSYNNGGGGGGYGGGSGSNFGGGGSY 334
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 218 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 260
Score = 48 (22.0 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 242 GLNPSFGANANFNSNLSYG--RGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLW 299
G N +FG NF+ +G RG Y G+ + Y G D +S +R +
Sbjct: 232 GGNDNFGRGGNFSGRGGFGGSRGGGGYG-GSGDGYNG-FGNDGGYGGGGPGYSGGSRG-Y 288
Query: 300 GNGG 303
G+GG
Sbjct: 289 GSGG 292
Score = 41 (19.5 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSS 386
FG G N G +G YG G + SSS
Sbjct: 347 FGPMKGGNFGGRSSGPYGGGGGYGGSSSSS 376
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 314 (115.6 bits), Expect = 1.5e-35, Sum P(3) = 1.5e-35
Identities = 66/163 (40%), Positives = 98/163 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YFS +GEV++ I D NTGR+RGFGF++F + +
Sbjct: 41 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVD 100
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V+Q+K H +DGR ++ K+A+ + V +KIFVGGL TE
Sbjct: 101 RVLQQKEHRLDGRQIDPKRAMAIKKEPV-----------------KKIFVGGLNPETTEE 143
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG I + + D T + RGF FIT+ E AV K+
Sbjct: 144 KIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKI 186
Score = 155 (59.6 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVIQ 65
K+F+GG++ +T EE+++EYF ++GE+ + D T + RGF F+ F + AV +I+ +
Sbjct: 130 KIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189
Query: 66 EKHNIDGRMVEAKKAVPRD 84
+ HN+ G E K A P++
Sbjct: 190 KYHNVCGSKCEIKIAQPKE 208
Score = 55 (24.4 bits), Expect = 1.5e-35, Sum P(3) = 1.5e-35
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 357 FGYGSGDNSFGLGAGGYGRNP 377
+GYGSG + GA YG+ P
Sbjct: 277 YGYGSGYDYTDQGAASYGKTP 297
Score = 53 (23.7 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
+GYG G +G G GGYG SS + GYD
Sbjct: 253 YGYG-GQQGYG-GYGGYGNYD-----YSSGYYGYGSGYD 284
Score = 42 (19.8 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 357 FGY-GSGDNSFGLGAGGYGR--NPGTTLAQSSSFAASNGGYDG 396
FG G G G G GG G+ N G + + GY G
Sbjct: 215 FGARGGGFGGRGRGRGGPGQSWNQGYNNYWNQGYGGQGYGYGG 257
Score = 41 (19.5 bits), Expect = 1.5e-35, Sum P(3) = 1.5e-35
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 245 PSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
P N +N+ + G G Y G YG GY
Sbjct: 232 PGQSWNQGYNNYWNQGYGGQGYGYGGQQGYGGYGGY 267
Score = 39 (18.8 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 358 GYGS-GDNSFGLGAGGYGRNPGTTLAQSSSFAAS--NGGY 394
GYG G+ + G GYG T ++S+ + GG+
Sbjct: 263 GYGGYGNYDYSSGYYGYGSGYDYTDQGAASYGKTPRRGGH 302
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 357 (130.7 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 65/163 (39%), Positives = 104/163 (63%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ + GKLF+GG+SW+T +E L YF +G++++ V+MK+ +GR+RGFGFV FADP
Sbjct: 3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62
Query: 62 IVIQE-KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V+Q H +DGR ++ K PR L + K+F+GGL S VTE+
Sbjct: 63 HVLQNGPHTLDGRTIDPKPCNPR----TLQKPKKGGGY--------KVFLGGLPSNVTET 110
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
D + +F+++G +T+VV+MYD ++ RGFGF++++ E +V+ V
Sbjct: 111 DLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHV 153
Score = 175 (66.7 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 34/79 (43%), Positives = 53/79 (67%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+ + E L+ +F+ YG+V E VIM D+ ++RGFGF+ F + + E V E
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 67 KH-NIDGRMVEAKKAVPRD 84
++ N++G+ VE KKA PRD
Sbjct: 157 RYINLNGKQVEIKKAEPRD 175
Score = 135 (52.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ T+ + +YF +FG I D VVM ++ + R RGFGF+T+ V+ V +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 167 VPKELSPGPTRSP 179
P L G T P
Sbjct: 68 GPHTLD-GRTIDP 79
Score = 42 (19.8 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 358 GYGSG-DNSFGL-----GAGGYGRNPGTTLAQSSS 386
GYGSG D + GA YG P + SS
Sbjct: 376 GYGSGYDYDYSNYVKQEGASNYGAGPRSAYGNDSS 410
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 85/220 (38%), Positives = 122/220 (55%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVIQ 65
KLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 115
Query: 66 EKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
H +DGR ++ K+ PR D ++ KIFVGG+ E++ ++Y
Sbjct: 116 RPHTLDGRNIDPKQKGPRSDN----------------SKSNKIFVGGIPHNCGETELREY 159
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVPKE 170
F +FG +T+VV++YD QRPRGFGFIT++ E++VD+ VKRA P++
Sbjct: 160 FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRD 219
Query: 171 LSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
P G +G V + NG+ P+ GYG
Sbjct: 220 SKSQAPGQP-GASQWGSRVVPNAANGWAGQPPPTWQQGYG 258
Score = 175 (66.7 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E L+EYF +G V E V++ D R RGFGF+ F D +V +
Sbjct: 137 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 196
Query: 62 IVIQEKHNIDGRMVEAKKAVPRDDQ 86
V H+I G+ VE K+A PRD +
Sbjct: 197 AVNMHFHDIMGKKVEVKRAEPRDSK 221
Score = 138 (53.6 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V V
Sbjct: 55 RKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 114
Query: 166 AVPKEL 171
+ P L
Sbjct: 115 SRPHTL 120
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 71/161 (44%), Positives = 105/161 (65%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIV 63
D GK+FIGG+SW T E L++YF +GEV E ++M+D T RARGFGF+ F DP+ + V
Sbjct: 43 DPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKV 102
Query: 64 IQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDF 122
+ + H +DG+ ++ K A P+ Q L +T+K+F+GGL++T T D
Sbjct: 103 LNNREHELDGKKIDPKVAFPKRTQAKL------------VTKTKKVFIGGLSATSTLEDM 150
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
K+YF+ +G + D ++M+D TQR RGFGF+T+DS+E DKV
Sbjct: 151 KQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKV 191
Score = 190 (71.9 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 39/79 (49%), Positives = 55/79 (69%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ- 65
K+FIGG+S + E +K+YF TYG+V +A++M D+ T R RGFGFV F VA+ V +
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEI 194
Query: 66 EKHNIDGRMVEAKKAVPRD 84
H I+G+MVE KKA P++
Sbjct: 195 HFHEINGKMVECKKAQPKE 213
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 93/236 (39%), Positives = 135/236 (57%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVA 60
Q D GK+FIGG+SW T+ + L++YF +GE+ E ++M+D T R+RGFGF+ FAD +V
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVD 76
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGL-ASTVTE 119
+++ Q H +D + ++ K A PR Q + RT+KIFVGGL ASTV E
Sbjct: 77 KVLAQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSASTVVE 124
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------K 164
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+KV K
Sbjct: 125 -DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVECK 183
Query: 165 RAVPKELS-PGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRFSP 219
+A PKE+ P TR Y + ++F+ G P+ V YG G FSP
Sbjct: 184 KAQPKEVMFPPGTRGRARSLPYTM---DAFMLGMGMLSYPNIVATYGRGYTG-FSP 235
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 94/231 (40%), Positives = 135/231 (58%)
Query: 8 LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVI-QE 66
+FIGG+SW T+ + L++YFS +GE+ E ++M+D T R+RGFGFV FADPA + V+ Q
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGL-ASTVTESDFKKY 125
H +D + ++ K A PR Q + RT+KIFVGGL A+TV E D K+Y
Sbjct: 61 HHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVE-DVKQY 107
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------KRAVPKE 170
F+QFG + D ++M+D T R RGFGF+T+++E+ V+KV K+A PKE
Sbjct: 108 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 167
Query: 171 LS-PGPTRSPLGGYHYGLSRVNSFLNGYTQ-GYTPSTVGGYGLRMDGRFSP 219
+ P TR G Y + ++F+ G GY P+ V YG G F+P
Sbjct: 168 VMFPPGTRGRARGLPYTM---DAFMLGMGMLGY-PNFVATYGRGYPG-FAP 213
Score = 181 (68.8 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 36/79 (45%), Positives = 54/79 (68%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ- 65
K+F+GG+S +T E +K+YF +G+V +A++M D+ T R RGFGFV F + V E V +
Sbjct: 89 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 148
Query: 66 EKHNIDGRMVEAKKAVPRD 84
H I+ +MVE KKA P++
Sbjct: 149 HFHEINNKMVECKKAQPKE 167
Score = 39 (18.8 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 168 PKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
P SPGP + L YG + +S + Y +P G+G
Sbjct: 270 PGANSPGPV-ADL----YGPASQDSGVGNYISAASPQPGSGFG 307
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 298 (110.0 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 57/158 (36%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ + +
Sbjct: 34 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 93
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D + +KIFVGG+ E + ++Y
Sbjct: 94 RPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLREY 143
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 144 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 181
Score = 189 (71.6 bits), Expect = 6.0e-16, Sum P(3) = 6.0e-16
Identities = 36/80 (45%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L+EYF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 125 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 184
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 185 KYHTINGHNCEVKKALSKQE 204
Score = 166 (63.5 bits), Expect = 5.8e-13, Sum P(3) = 5.8e-13
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 92
Query: 166 AVPKEL 171
A P ++
Sbjct: 93 ARPHKV 98
Score = 65 (27.9 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 17/39 (43%), Positives = 18/39 (46%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYGS G G GYG NPG + GGYDG
Sbjct: 281 GYGSRGGYGGGGGPGYG-NPG------GGYGGGGGGYDG 312
Score = 57 (25.1 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 358 GYGSGDNSFGLGAGGY-GRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG+ +G G GGY G N G +F N G G + D
Sbjct: 295 GYGNPGGGYGGGGGGYDGYNEG------GNFGGGNYGGSGNYND 332
Score = 57 (25.1 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 17/41 (41%), Positives = 18/41 (43%)
Query: 357 FGYGSGDNSFG-LGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG G G N FG + G YG PG S GGY G
Sbjct: 259 FGGGDGYNGFGDVKGGNYGGGPGY---------GSRGGYGG 290
Score = 57 (25.1 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFADL 401
+G G N FG G GGYG G SF +G Y+G F D+
Sbjct: 234 FGRGGN-FG-GRGGYGGGGGGG-GSRGSFGGGDG-YNG-FGDV 271
Score = 47 (21.6 bits), Expect = 9.6e-33, Sum P(3) = 9.6e-33
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 359 YGSGDNSFGLGAGGYG 374
YG G S G G+GGYG
Sbjct: 362 YGGGYGS-GSGSGGYG 376
Score = 45 (20.9 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 358 GYGSGD----NSFGLGAGGYGRNPGTTLAQSSSFAASNGG 393
G GSG+ +FG G G +GR G + GG
Sbjct: 215 GGGSGNFMGRGNFGGGGGNFGR--GGNFGGRGGYGGGGGG 252
Score = 38 (18.4 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 246 SFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGYD 281
+FG NF YG G G+ +G GY+
Sbjct: 233 NFGRGGNFGGRGGYGGGGGGG--GSRGSFGGGDGYN 266
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 295 (108.9 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDAAM 71
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 72 CARPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 161
Score = 186 (70.5 bits), Expect = 8.4e-16, Sum P(3) = 8.4e-16
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 105 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 164
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 165 KYHTINGHNCEVKKALSKQE 184
Score = 164 (62.8 bits), Expect = 6.6e-13, Sum P(3) = 6.6e-13
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 166 AVPKEL 171
A P ++
Sbjct: 73 ARPHKV 78
Score = 67 (28.6 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
+G GSG +S G G GG G G Q + GGYDG
Sbjct: 255 YGGGSGSSSRG-GYGGGGPGYGN---QGGGYGGGGGGYDG 290
Score = 63 (27.2 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
FG G G+ G GG G G SS+ +GGY+G D
Sbjct: 208 FGGGGGNFXRGGNFGGKGXYGGGGGGXRSSYGGGDGGYNGFGGD 251
Score = 60 (26.2 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG--TTLAQSSSFAASNGGYDGVFAD 400
GYG G +G GGYG G + +F N G G + D
Sbjct: 266 GYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYND 310
Score = 59 (25.8 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
YG GD + G GG G N G S ++S GGY G
Sbjct: 238 YGGGDGGYN-GFGGDGGNYG-----GGSGSSSRGGYGG 269
Score = 46 (21.3 bits), Expect = 7.6e-33, Sum P(3) = 7.6e-33
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 359 YGSGDNSFGLGAGGYG 374
YG G S G G+GGYG
Sbjct: 339 YGGGYGSGG-GSGGYG 353
Score = 45 (20.9 bits), Expect = 9.6e-33, Sum P(3) = 9.6e-33
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 357 FGYGSGDNSFGLGAG----GYGRNPGTTLAQSSSFAASNGGY 394
+G G N FG +G YG G + SS + GGY
Sbjct: 302 YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGY 343
Score = 43 (20.2 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 174 GPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
G RS GG G + Y G S+ GGYG
Sbjct: 232 GGXRSSYGGGDGGYNGFGGDGGNYGGGSGSSSRGGYG 268
Score = 42 (19.8 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G +G G GG + G + F G Y G
Sbjct: 219 GNFGGKGXYGGGGGGXRSSYGGGDGGYNGFGGDGGNYGG 257
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 308 (113.5 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV ++ + +
Sbjct: 39 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDA 98
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR VE K+AV R+D +K+FVGG+ E ++Y
Sbjct: 99 RPHKVDGRAVEPKRAVSREDS----------SKPGAHSTVKKMFVGGIKEDTDEEHLREY 148
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F QFG I +V +M + N+ + RGF FIT+D +AVD++
Sbjct: 149 FGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRI 186
Score = 193 (73.0 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT+EE L+EYF +G++ E IM ++N+ + RGF F+ F D AV IVIQ
Sbjct: 130 KMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQ 189
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ R++
Sbjct: 190 KYHTVNGHNCEVRKALSREE 209
Score = 171 (65.3 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY S VD
Sbjct: 38 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMD 97
Query: 166 AVPKEL 171
A P ++
Sbjct: 98 ARPHKV 103
Score = 69 (29.3 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 358 GYGSGD--NSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG GD N +G G GGYG G + + + GG G
Sbjct: 259 GYGGGDGYNGYGGGNGGYGGG-GPNYGGNRGYGSGGGGGGG 298
Score = 60 (26.2 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG G G G GGYG G + + NGGY G
Sbjct: 247 GYGGGGGR-G-GGGGYGGGDGY-----NGYGGGNGGYGG 278
Score = 56 (24.8 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 16/39 (41%), Positives = 17/39 (43%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYGSG G G GGYG G +NGG G
Sbjct: 288 GYGSGGG--GGGGGGYGNQGGGYGGGGYDNYNNNGGGGG 324
Score = 52 (23.4 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G G + G GGYG G GGY G
Sbjct: 366 GGGGGRSGGGPYGGGYGGGSGGGGGYGGGSGGGGGGYGG 404
Score = 51 (23.0 bits), Expect = 4.3e-34, Sum P(3) = 4.3e-34
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 358 GYGSGDNSFGLGAGGYGR--NPGTTLAQSSSFAASNGGYDGVFAD 400
G G G+ G G GGY N G +F N G G + D
Sbjct: 298 GGGYGNQGGGYGGGGYDNYNNNGGGGGGGGNFGGGNFGGGGDYND 342
Score = 51 (23.0 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 14/39 (35%), Positives = 15/39 (38%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G GSG +FG G GG G GGY G
Sbjct: 224 GGGSGGGNFGRGGGGGGGGGYGGGYGGGGGRGGGGGYGG 262
Score = 48 (22.0 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQS-SSFAASNGGYDG 396
+G G N +G G GG GR+ G + GGY G
Sbjct: 354 YGPMKGGN-YGGGGGGGGRSGGGPYGGGYGGGSGGGGGYGG 393
Score = 46 (21.3 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 359 YGSGDNSFGLGAGG-YGRNPGTTLAQSSSFAASNGGYDG 396
YG G G GG YG G + +GG G
Sbjct: 362 YGGGGGGGGRSGGGPYGGGYGGGSGGGGGYGGGSGGGGG 400
Score = 45 (20.9 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGG 393
GYG G G GGYG G + +GG
Sbjct: 380 GYGGGSG----GGGGYGGGSG---GGGGGYGGGSGG 408
Score = 44 (20.5 bits), Expect = 2.3e-33, Sum P(3) = 2.3e-33
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G G +G GGYG + G + G
Sbjct: 293 GGGGGGGGYGNQGGGYGGGGYDNYNNNGGGGGGGGNFGG 331
Score = 43 (20.2 bits), Expect = 2.9e-33, Sum P(3) = 2.9e-33
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 357 FGYGSGDNSFGLGAGGYGR 375
+G GSG G G G GR
Sbjct: 391 YGGGSGGGGGGYGGGSGGR 409
Score = 37 (18.1 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 242 GLNPSFGANA-NFNSNLSYGRG 262
G N +G N+ N YG G
Sbjct: 271 GGNGGYGGGGPNYGGNRGYGSG 292
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 293 (108.2 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 57/158 (36%), Positives = 96/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A ++ +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+VE K+AV R++ +K+FVGG+ E + Y
Sbjct: 70 RPHSIDGRVVEPKRAVAREES----------GKPGAHVTVKKLFVGGIKEDTEEHHLRDY 119
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 120 FEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKI 156
Score = 175 (66.7 bits), Expect = 5.0e-15, Sum P(3) = 5.0e-15
Identities = 39/86 (45%), Positives = 54/86 (62%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQ 159
Query: 66 EKHNIDGRMVEAKKAVPRDD-QIVLN 90
+ H +G E +KA+ R + Q V N
Sbjct: 160 KYHTKNGHNAEVRKALSRQEMQEVQN 185
Score = 151 (58.2 bits), Expect = 8.3e-12, Sum P(3) = 8.3e-12
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD A
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 167 VPKEL 171
P +
Sbjct: 70 RPHSI 74
Score = 74 (31.1 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 17/40 (42%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASNGGYDG 396
GYGSG FG G GYG P + S + GGY G
Sbjct: 220 GYGSG-RGFGDGYNGYGGGPRSGNFGGSPGYGGGRGGYGG 258
Score = 61 (26.5 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG G +++G G YGRN G + +GG G
Sbjct: 269 GYGGGYDNYG--GGNYGRNMGGPYGGGNYGPGGSGGSGG 305
Score = 60 (26.2 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 358 GYGSGDNS--FGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG G S FG G+ GYG G + GGY G
Sbjct: 233 GYGGGPRSGNFG-GSPGYGGGRGGYGGGGPGYGNQGGGYGG 272
Score = 56 (24.8 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGG 393
GYG G +G G GYG G ++ N G
Sbjct: 248 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG 283
Score = 46 (21.3 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRF 217
GGY G + GY GY G YG M G +
Sbjct: 254 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYGRNMGGPY 290
Score = 43 (20.2 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 250 NANFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
+ NF + YG G Y G P YG+ G
Sbjct: 240 SGNFGGSPGYGGGRGGYGGGGPG-YGNQGG 268
Score = 39 (18.8 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 362 GDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY-DG 396
GD S G G G G PG+ S S G+ DG
Sbjct: 197 GD-SRG-GGGNSGPGPGSNFRGGSDGYGSGRGFGDG 230
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 295 (108.9 bits), Expect = 4.3e-34, Sum P(3) = 4.3e-34
Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDAAM 93
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Score = 186 (70.5 bits), Expect = 2.3e-15, Sum P(3) = 2.3e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 164 (62.8 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 166 AVPKEL 171
A P ++
Sbjct: 95 ARPHKV 100
Score = 67 (28.6 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
+G G N FG G GGYG G S+ +GGY+G D
Sbjct: 237 FGRGGN-FG-GRGGYGGGGG---GSRGSYGGGDGGYNGFGGD 273
Score = 62 (26.9 bits), Expect = 4.3e-34, Sum P(3) = 4.3e-34
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTT-LAQSSSFAASNGGYDGVFAD 400
GYG G +G GGYG G + +F N G G + D
Sbjct: 288 GYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYND 331
Score = 57 (25.1 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 359 YGSGD---NSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
YG GD N FG G YG PG + + GY
Sbjct: 260 YGGGDGGYNGFGGDGGNYGGGPG--YSSRGGYGGGGPGY 296
Score = 50 (22.7 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
+G G G +S G G GG G G Q + GGYDG
Sbjct: 277 YGGGPGYSSRG-GYGGGGPGYGN---QGGGYGGG-GGYDG 311
Score = 49 (22.3 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 360 GSGDNSFGLGAGGYGR--NPGTTLAQSSSFAASNGGYDG 396
G G N FG G G +GR N G S G Y G
Sbjct: 225 GRGGN-FGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
Score = 46 (21.3 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 359 YGSGDNSFGLGAGGYG 374
YG G S G G+GGYG
Sbjct: 360 YGGGYGSGG-GSGGYG 374
Score = 45 (20.9 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 357 FGYGSGDNSFGLGAG----GYGRNPGTTLAQSSSFAASNGGY 394
+G G N FG +G YG G + SS + GGY
Sbjct: 323 YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGY 364
Score = 39 (18.8 bits), Expect = 4.3e-34, Sum P(3) = 4.3e-34
Identities = 18/61 (29%), Positives = 21/61 (34%)
Query: 246 SFGANANFNSNLSYGRG---LSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWGNG 302
+FG NF YG G Y G Y G D +SS R +G G
Sbjct: 236 NFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNG-FGGDGGNYGGGPGYSS--RGGYGGG 292
Query: 303 G 303
G
Sbjct: 293 G 293
Score = 37 (18.1 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 174 GPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
G +R GG G + Y G S+ GGYG
Sbjct: 254 GGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYG 290
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 303 (111.7 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 6.2e-15, Sum P(3) = 6.2e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 8.4e-14, Sum P(3) = 8.4e-14
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 56 (24.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ ++FG G G Y + G QSS+F GG G
Sbjct: 246 GFGNDGSNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 282
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 48 (22.0 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 242 GLNPSFGANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWG 300
G FG N NF ++ GRG G GS GY+ ++F + N +G
Sbjct: 205 GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFG 264
Query: 301 N 301
N
Sbjct: 265 N 265
Score = 44 (20.5 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 263 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 307
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 303 (111.7 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 6.2e-15, Sum P(3) = 6.2e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 8.4e-14, Sum P(3) = 8.4e-14
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 56 (24.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ ++FG G G Y + G QSS+F GG G
Sbjct: 246 GFGNDGSNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 282
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 48 (22.0 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 242 GLNPSFGANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWG 300
G FG N NF ++ GRG G GS GY+ ++F + N +G
Sbjct: 205 GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFG 264
Query: 301 N 301
N
Sbjct: 265 N 265
Score = 44 (20.5 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 263 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 307
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 303 (111.7 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 6.2e-15, Sum P(3) = 6.2e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 8.4e-14, Sum P(3) = 8.4e-14
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 56 (24.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ ++FG G G Y + G QSS+F GG G
Sbjct: 246 GFGNDGSNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 282
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 48 (22.0 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 242 GLNPSFGANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWG 300
G FG N NF ++ GRG G GS GY+ ++F + N +G
Sbjct: 205 GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFG 264
Query: 301 N 301
N
Sbjct: 265 N 265
Score = 44 (20.5 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 263 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 307
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 303 (111.7 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 6.2e-15, Sum P(3) = 6.2e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 8.4e-14, Sum P(3) = 8.4e-14
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 56 (24.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ ++FG G G Y + G QSS+F GG G
Sbjct: 246 GFGNDGSNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 282
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 48 (22.0 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 242 GLNPSFGANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWG 300
G FG N NF ++ GRG G GS GY+ ++F + N +G
Sbjct: 205 GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFG 264
Query: 301 N 301
N
Sbjct: 265 N 265
Score = 44 (20.5 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 263 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 307
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 303 (111.7 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 6.2e-15, Sum P(3) = 6.2e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 8.4e-14, Sum P(3) = 8.4e-14
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 56 (24.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ ++FG G G Y + G QSS+F GG G
Sbjct: 246 GFGNDGSNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 282
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 48 (22.0 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 242 GLNPSFGANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWG 300
G FG N NF ++ GRG G GS GY+ ++F + N +G
Sbjct: 205 GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFG 264
Query: 301 N 301
N
Sbjct: 265 N 265
Score = 44 (20.5 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 263 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 307
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 303 (111.7 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 182 (69.1 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALCKQE 185
Score = 176 (67.0 bits), Expect = 8.4e-14, Sum P(3) = 8.4e-14
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 56 (24.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ ++FG G G Y + G QSS+F GG G
Sbjct: 246 GFGNDGSNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 282
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 48 (22.0 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 242 GLNPSFGANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWG 300
G FG N NF ++ GRG G GS GY+ ++F + N +G
Sbjct: 205 GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFG 264
Query: 301 N 301
N
Sbjct: 265 N 265
Score = 44 (20.5 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 263 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 307
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 296 (109.3 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 76/226 (33%), Positives = 118/226 (52%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDAAM 93
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVP 168
YF+++G I + VM D + + RGF F+T+D + VDK VK+A+
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 169 KE--LSPGPTRSPLGGYHYGLSRVNSFLNG--YTQGYTPSTVGGYG 210
K+ S G R GG + R +F G + +G GGYG
Sbjct: 204 KQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGNFGRGGNFGGRGGYG 249
Score = 164 (62.8 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 166 AVPKEL 171
A P ++
Sbjct: 95 ARPHKV 100
Score = 67 (28.6 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
+G G N FG G GGYG G S+ +GGY+G D
Sbjct: 236 FGRGGN-FG-GRGGYGGGGG---GSRGSYGGGDGGYNGFGGD 272
Score = 60 (26.2 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG--TTLAQSSSFAASNGGYDGVFAD 400
GYG G +G GGYG G + +F N G G + D
Sbjct: 287 GYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYND 331
Score = 59 (25.8 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 18/53 (33%), Positives = 20/53 (37%)
Query: 359 YGSGD---NSFGLGAGGYGRNPGTTLA------------QSSSFAASNGGYDG 396
YG GD N FG G YG PG + Q + GGYDG
Sbjct: 259 YGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDG 311
Score = 46 (21.3 bits), Expect = 1.6e-32, Sum P(3) = 1.6e-32
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 359 YGSGDNSFGLGAGGYG 374
YG G S G G+GGYG
Sbjct: 360 YGGGYGSGG-GSGGYG 374
Score = 45 (20.9 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 357 FGYGSGDNSFGLGAG----GYGRNPGTTLAQSSSFAASNGGY 394
+G G N FG +G YG G + SS + GGY
Sbjct: 323 YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGY 364
Score = 39 (18.8 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 18/61 (29%), Positives = 21/61 (34%)
Query: 246 SFGANANFNSNLSYGRG---LSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWGNG 302
+FG NF YG G Y G Y G D +SS R +G G
Sbjct: 235 NFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNG-FGGDGGNYGGGPGYSS--RGGYGGG 291
Query: 303 G 303
G
Sbjct: 292 G 292
Score = 37 (18.1 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 174 GPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
G +R GG G + Y G S+ GGYG
Sbjct: 253 GGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYG 289
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 303 (111.7 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 7.9e-15, Sum P(3) = 7.9e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 61 (26.5 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ N+FG G G Y + G QSS+F GG G
Sbjct: 246 GFGNDGNNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 282
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 47 (21.6 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 18/61 (29%), Positives = 24/61 (39%)
Query: 242 GLNPSFGANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWG 300
G FG N NF ++ GRG G GS GY+ +F + N +G
Sbjct: 205 GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGNNFGGGGSYNDFG 264
Query: 301 N 301
N
Sbjct: 265 N 265
Score = 44 (20.5 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 263 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 307
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 297 (109.6 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 57/158 (36%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+VE K+AV R++ +K+FVGG+ E + Y
Sbjct: 82 RPHSIDGRVVEPKRAVAREES----------GKPGAHVTVKKLFVGGIKEDTEEHHLRDY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 189 (71.6 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 157 (60.3 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
Score = 79 (32.9 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASNGGYDG 396
GYGSG FG G GYG PG S + GGY G
Sbjct: 233 GYGSG-RGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGG 271
Score = 58 (25.5 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG G +G G GYG G ++ N G G + D
Sbjct: 261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG-SGSYND 302
Score = 51 (23.0 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY-DG 396
+G GD S G G G +G PG+ S S G+ DG
Sbjct: 207 FGFGD-SRG-GGGNFGPGPGSNFRGGSDGYGSGRGFGDG 243
Score = 42 (19.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 252 NFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
NF + YG G Y G P YG+ G
Sbjct: 255 NFGGSPGYGGGRGGYGGGGPG-YGNQGG 281
Score = 39 (18.8 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
G N FG + N +G G + G + YGS G+
Sbjct: 204 GGNFGFGDSRGGGGN--FGPGPGSNFRGGSDGYGSGRGF 240
Score = 37 (18.1 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
GGY G + GY GY G YG
Sbjct: 267 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYG 296
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 295 (108.9 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDAAM 93
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Score = 186 (70.5 bits), Expect = 3.8e-15, Sum P(3) = 3.8e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 164 (62.8 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 166 AVPKEL 171
A P ++
Sbjct: 95 ARPHKV 100
Score = 67 (28.6 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
+G G N FG G GGYG G S+ +GGY+G D
Sbjct: 237 FGRGGN-FG-GRGGYGGGGG---GSRGSYGGGDGGYNGFGGD 273
Score = 60 (26.2 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG--TTLAQSSSFAASNGGYDGVFAD 400
GYG G +G GGYG G + +F N G G + D
Sbjct: 288 GYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYND 332
Score = 59 (25.8 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 18/53 (33%), Positives = 20/53 (37%)
Query: 359 YGSGD---NSFGLGAGGYGRNPGTTLA------------QSSSFAASNGGYDG 396
YG GD N FG G YG PG + Q + GGYDG
Sbjct: 260 YGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDG 312
Score = 49 (22.3 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 360 GSGDNSFGLGAGGYGR--NPGTTLAQSSSFAASNGGYDG 396
G G N FG G G +GR N G S G Y G
Sbjct: 225 GRGGN-FGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
Score = 46 (21.3 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 359 YGSGDNSFGLGAGGYG 374
YG G S G G+GGYG
Sbjct: 361 YGGGYGSGG-GSGGYG 375
Score = 45 (20.9 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 357 FGYGSGDNSFGLGAG----GYGRNPGTTLAQSSSFAASNGGY 394
+G G N FG +G YG G + SS + GGY
Sbjct: 324 YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGY 365
Score = 39 (18.8 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 18/61 (29%), Positives = 21/61 (34%)
Query: 246 SFGANANFNSNLSYGRG---LSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWGNG 302
+FG NF YG G Y G Y G D +SS R +G G
Sbjct: 236 NFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNG-FGGDGGNYGGGPGYSS--RGGYGGG 292
Query: 303 G 303
G
Sbjct: 293 G 293
Score = 37 (18.1 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 174 GPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
G +R GG G + Y G S+ GGYG
Sbjct: 254 GGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYG 290
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 295 (108.9 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDAAM 93
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Score = 186 (70.5 bits), Expect = 3.8e-15, Sum P(3) = 3.8e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 164 (62.8 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 166 AVPKEL 171
A P ++
Sbjct: 95 ARPHKV 100
Score = 67 (28.6 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
+G G N FG G GGYG G S+ +GGY+G D
Sbjct: 237 FGRGGN-FG-GRGGYGGGGG---GSRGSYGGGDGGYNGFGGD 273
Score = 60 (26.2 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG--TTLAQSSSFAASNGGYDGVFAD 400
GYG G +G GGYG G + +F N G G + D
Sbjct: 288 GYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYND 332
Score = 59 (25.8 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 18/53 (33%), Positives = 20/53 (37%)
Query: 359 YGSGD---NSFGLGAGGYGRNPGTTLA------------QSSSFAASNGGYDG 396
YG GD N FG G YG PG + Q + GGYDG
Sbjct: 260 YGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDG 312
Score = 49 (22.3 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 360 GSGDNSFGLGAGGYGR--NPGTTLAQSSSFAASNGGYDG 396
G G N FG G G +GR N G S G Y G
Sbjct: 225 GRGGN-FGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
Score = 46 (21.3 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 359 YGSGDNSFGLGAGGYG 374
YG G S G G+GGYG
Sbjct: 361 YGGGYGSGG-GSGGYG 375
Score = 45 (20.9 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 357 FGYGSGDNSFGLGAG----GYGRNPGTTLAQSSSFAASNGGY 394
+G G N FG +G YG G + SS + GGY
Sbjct: 324 YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGY 365
Score = 39 (18.8 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 18/61 (29%), Positives = 21/61 (34%)
Query: 246 SFGANANFNSNLSYGRG---LSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWGNG 302
+FG NF YG G Y G Y G D +SS R +G G
Sbjct: 236 NFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNG-FGGDGGNYGGGPGYSS--RGGYGGG 292
Query: 303 G 303
G
Sbjct: 293 G 293
Score = 37 (18.1 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 174 GPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
G +R GG G + Y G S+ GGYG
Sbjct: 254 GGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYG 290
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 297 (109.6 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 57/158 (36%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+VE K+AV R++ +K+FVGG+ E + Y
Sbjct: 70 RPHSIDGRVVEPKRAVAREES----------GKPGAHVTVKKLFVGGIKEDTEEHHLRDY 119
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 120 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Score = 189 (71.6 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 161 KYHTINGHNAEVRKALSRQE 180
Score = 157 (60.3 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 AVPKEL 171
A P +
Sbjct: 69 ARPHSI 74
Score = 79 (32.9 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASNGGYDG 396
GYGSG FG G GYG PG S + GGY G
Sbjct: 221 GYGSG-RGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGG 259
Score = 57 (25.1 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG G +G G GYG G ++ N G G + D
Sbjct: 249 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG-SGNYND 290
Score = 51 (23.0 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY-DG 396
+G GD S G G G +G PG+ S S G+ DG
Sbjct: 195 FGFGD-SRG-GGGNFGPGPGSNFRGGSDGYGSGRGFGDG 231
Score = 47 (21.6 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 181 GGYHYGLSRVNSFLNGYTQ---GYTPSTVGGYG 210
GG +YG N F N Y Q Y P G +G
Sbjct: 279 GGGNYGSGNYNDFGN-YNQQPSNYGPMKSGNFG 310
Score = 42 (19.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 252 NFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
NF + YG G Y G P YG+ G
Sbjct: 243 NFGGSPGYGGGRGGYGGGGPG-YGNQGG 269
Score = 39 (18.8 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
G N FG + N +G G + G + YGS G+
Sbjct: 192 GGNFGFGDSRGGGGN--FGPGPGSNFRGGSDGYGSGRGF 228
Score = 37 (18.1 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
GGY G + GY GY G YG
Sbjct: 255 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYG 284
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 297 (109.6 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 57/158 (36%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+VE K+AV R++ +K+FVGG+ E + Y
Sbjct: 82 RPHSIDGRVVEPKRAVAREES----------GKPGAHVTVKKLFVGGIKEDTEEHHLRDY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 189 (71.6 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 157 (60.3 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
Score = 79 (32.9 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASNGGYDG 396
GYGSG FG G GYG PG S + GGY G
Sbjct: 233 GYGSG-RGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGG 271
Score = 57 (25.1 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG G +G G GYG G ++ N G G + D
Sbjct: 261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG-SGNYND 302
Score = 51 (23.0 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY-DG 396
+G GD S G G G +G PG+ S S G+ DG
Sbjct: 207 FGFGD-SRG-GGGNFGPGPGSNFRGGSDGYGSGRGFGDG 243
Score = 47 (21.6 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 181 GGYHYGLSRVNSFLNGYTQ---GYTPSTVGGYG 210
GG +YG N F N Y Q Y P G +G
Sbjct: 291 GGGNYGSGNYNDFGN-YNQQPSNYGPMKSGNFG 322
Score = 42 (19.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 252 NFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
NF + YG G Y G P YG+ G
Sbjct: 255 NFGGSPGYGGGRGGYGGGGPG-YGNQGG 281
Score = 39 (18.8 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
G N FG + N +G G + G + YGS G+
Sbjct: 204 GGNFGFGDSRGGGGN--FGPGPGSNFRGGSDGYGSGRGF 240
Score = 37 (18.1 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
GGY G + GY GY G YG
Sbjct: 267 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYG 296
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 297 (109.6 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 57/158 (36%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+VE K+AV R++ +K+FVGG+ E + Y
Sbjct: 82 RPHSIDGRVVEPKRAVAREES----------GKPGAHVTVKKLFVGGIKEDTEEHHLRDY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 189 (71.6 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 157 (60.3 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
Score = 79 (32.9 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASNGGYDG 396
GYGSG FG G GYG PG S + GGY G
Sbjct: 233 GYGSG-RGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGG 271
Score = 57 (25.1 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG G +G G GYG G ++ N G G + D
Sbjct: 261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG-SGNYND 302
Score = 51 (23.0 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY-DG 396
+G GD S G G G +G PG+ S S G+ DG
Sbjct: 207 FGFGD-SRG-GGGNFGPGPGSNFRGGSDGYGSGRGFGDG 243
Score = 47 (21.6 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 181 GGYHYGLSRVNSFLNGYTQ---GYTPSTVGGYG 210
GG +YG N F N Y Q Y P G +G
Sbjct: 291 GGGNYGSGNYNDFGN-YNQQPSNYGPMKSGNFG 322
Score = 42 (19.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 252 NFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
NF + YG G Y G P YG+ G
Sbjct: 255 NFGGSPGYGGGRGGYGGGGPG-YGNQGG 281
Score = 39 (18.8 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
G N FG + N +G G + G + YGS G+
Sbjct: 204 GGNFGFGDSRGGGGN--FGPGPGSNFRGGSDGYGSGRGF 240
Score = 37 (18.1 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
GGY G + GY GY G YG
Sbjct: 267 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYG 296
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 297 (109.6 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 57/158 (36%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+VE K+AV R++ +K+FVGG+ E + Y
Sbjct: 81 RPHSIDGRVVEPKRAVAREES----------GKPGAHVTVKKLFVGGIKEDTEEHHLRDY 130
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 131 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 168
Score = 189 (71.6 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 172 KYHTINGHNAEVRKALSRQE 191
Score = 157 (60.3 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 166 AVPKEL 171
A P +
Sbjct: 80 ARPHSI 85
Score = 79 (32.9 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASNGGYDG 396
GYGSG FG G GYG PG S + GGY G
Sbjct: 232 GYGSG-RGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGG 270
Score = 57 (25.1 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG G +G G GYG G ++ N G G + D
Sbjct: 260 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG-SGNYND 301
Score = 51 (23.0 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY-DG 396
+G GD S G G G +G PG+ S S G+ DG
Sbjct: 206 FGFGD-SRG-GGGNFGPGPGSNFRGGSDGYGSGRGFGDG 242
Score = 47 (21.6 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 181 GGYHYGLSRVNSFLNGYTQ---GYTPSTVGGYG 210
GG +YG N F N Y Q Y P G +G
Sbjct: 290 GGGNYGSGNYNDFGN-YNQQPSNYGPMKSGNFG 321
Score = 42 (19.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 252 NFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
NF + YG G Y G P YG+ G
Sbjct: 254 NFGGSPGYGGGRGGYGGGGPG-YGNQGG 280
Score = 39 (18.8 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
G N FG + N +G G + G + YGS G+
Sbjct: 203 GGNFGFGDSRGGGGN--FGPGPGSNFRGGSDGYGSGRGF 239
Score = 37 (18.1 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
GGY G + GY GY G YG
Sbjct: 266 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYG 295
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 297 (109.6 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 57/158 (36%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+VE K+AV R++ +K+FVGG+ E + Y
Sbjct: 82 RPHSIDGRVVEPKRAVAREES----------GKPGAHVTVKKLFVGGIKEDTEEHHLRDY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 184 (69.8 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +I +Q
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 157 (60.3 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
Score = 79 (32.9 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASNGGYDG 396
GYGSG FG G GYG PG S + GGY G
Sbjct: 233 GYGSG-RGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGG 271
Score = 57 (25.1 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG G +G G GYG G ++ N G G + D
Sbjct: 261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG-SGNYND 302
Score = 51 (23.0 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY-DG 396
+G GD S G G G +G PG+ S S G+ DG
Sbjct: 207 FGFGD-SRG-GGGNFGPGPGSNFRGGSDGYGSGRGFGDG 243
Score = 47 (21.6 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 181 GGYHYGLSRVNSFLNGYTQ---GYTPSTVGGYG 210
GG +YG N F N Y Q Y P G +G
Sbjct: 291 GGGNYGSGNYNDFGN-YNQQPSNYGPMKSGNFG 322
Score = 42 (19.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 252 NFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
NF + YG G Y G P YG+ G
Sbjct: 255 NFGGSPGYGGGRGGYGGGGPG-YGNQGG 281
Score = 39 (18.8 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
G N FG + N +G G + G + YGS G+
Sbjct: 204 GGNFGFGDSRGGGGN--FGPGPGSNFRGGSDGYGSGRGF 240
Score = 37 (18.1 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
GGY G + GY GY G YG
Sbjct: 267 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYG 296
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 293 (108.2 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 56/158 (35%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+VE K+AV R++ +K+FVGG+ E + Y
Sbjct: 82 RPHSIDGRVVEPKRAVAREES----------GKPGAHVTVKKLFVGGIKEDTEEHHLRDY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G + + ++ D + + RGFGF T+D + VDK+
Sbjct: 132 FEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKI 169
Score = 185 (70.2 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG+V I+ DR +G+ RGFGF F D V +IV+Q
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 157 (60.3 bits), Expect = 9.6e-12, Sum P(3) = 9.6e-12
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
Score = 67 (28.6 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 357 FGYGSGDNSFGLGAGGYGRN-PGTTLAQSSSFAASNGGYDG 396
+GYGSG FG G GYG G + GGY G
Sbjct: 232 YGYGSG-RGFGDGYNGYGGGLGGGNFGGIPGYGGGRGGYGG 271
Score = 57 (25.1 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG G +G G GYG G ++ N G G + D
Sbjct: 261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG-SGNYND 302
Score = 57 (25.1 bits), Expect = 2.9e-33, Sum P(3) = 2.9e-33
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
+G G G +FG G GYG G + GGY G
Sbjct: 247 YGGGLGGGNFG-GIPGYGGGRGGYGGGGPGYGNQGGGYGG 285
Score = 52 (23.4 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSS-SFAASNG---GYDG 396
+G GD S G G G +G PG+ S + + G GY+G
Sbjct: 207 FGFGD-SHG-GGGNFGPGPGSNFRGGSYGYGSGRGFGDGYNG 246
Score = 48 (22.0 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 181 GGYHYGLSRVNSFLNGYTQ---GYTPSTVGGYG--LRMDGRF 217
GG +YG N F N Y Q Y P G +G M+G +
Sbjct: 291 GGGNYGSGNYNDFGN-YNQQPSNYGPMKSGSFGGSRNMEGPY 331
Score = 43 (20.2 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 248 GANANFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
G +NF SYG G + N YG LG
Sbjct: 222 GPGSNFRGG-SYGYGSGRGFGDGYNGYGGGLG 252
Score = 38 (18.4 bits), Expect = 2.9e-33, Sum P(3) = 2.9e-33
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
G +FG + ++G G + G YGS G+
Sbjct: 202 GRGGNFGFGDSHGGGGNFGPGPGSNFRGGSYGYGSGRGF 240
Score = 38 (18.4 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 252 NFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
NF YG G Y G P YG+ G
Sbjct: 255 NFGGIPGYGGGRGGYGGGGPG-YGNQGG 281
Score = 37 (18.1 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
GGY G + GY GY G YG
Sbjct: 267 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYG 296
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 300 (110.7 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 60/158 (37%), Positives = 93/158 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 TPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 190 (71.9 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 36/80 (45%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H + G E +KA+P+ +
Sbjct: 166 KYHTVKGHNCEVRKALPKQE 185
Score = 175 (66.7 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
P ++
Sbjct: 74 TTPHKV 79
Score = 56 (24.8 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ ++FG G G Y + G QSS+F GG G
Sbjct: 246 GFGNDGSNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 282
Score = 53 (23.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSCGGGGYGGSGDGYNG 246
Score = 51 (23.0 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 242 GLNPSFGANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWG 300
G FG N NF ++ GRG G GS GY+ ++F + N +G
Sbjct: 205 GRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFG 264
Query: 301 N 301
N
Sbjct: 265 N 265
Score = 40 (19.1 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDGV 397
FG Y + ++FG GG GR+ G FA + GGY GV
Sbjct: 263 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGY-GV 307
Score = 38 (18.4 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 179 PLGGYHYGLSRVNSFLNGYTQGYT-PSTVGGYGL 211
P+ G ++G R + G Q + P GGYG+
Sbjct: 275 PMKGGNFG-GRSSGPYGGGGQYFAKPQNQGGYGV 307
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 295 (108.9 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDAAM 93
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Score = 186 (70.5 bits), Expect = 9.9e-15, Sum P(3) = 9.9e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 164 (62.8 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 166 AVPKEL 171
A P ++
Sbjct: 95 ARPHKV 100
Score = 67 (28.6 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
+G G N FG G GGYG G S+ +GGY+G D
Sbjct: 237 FGRGGN-FG-GRGGYGGGGG---GSRGSYGGGDGGYNGFGGD 273
Score = 63 (27.2 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 358 GYGSGDNSFGLGAG-----GYGRN-PGTTLAQSSSFAASNGGYDG 396
G+G ++G G G GYG PG Q + GGYDG
Sbjct: 269 GFGGDGGNYGGGPGYSSRGGYGGGGPGGYGNQGGGYGGGGGGYDG 313
Score = 59 (25.8 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 359 YGSGD---NSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
YG GD N FG G YG PG + ++ GGY
Sbjct: 260 YGGGDGGYNGFGGDGGNYGGGPGYS-SRGGYGGGGPGGY 297
Score = 56 (24.8 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 358 GYGSGDNSFGLGAGGY-GRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG+ +G G GGY G N G +F N G G + D
Sbjct: 296 GYGNQGGGYGGGGGGYDGYNEG------GNFGGGNYGGGGNYND 333
Score = 49 (22.3 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 360 GSGDNSFGLGAGGYGR--NPGTTLAQSSSFAASNGGYDG 396
G G N FG G G +GR N G S G Y G
Sbjct: 225 GRGGN-FGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
Score = 46 (21.3 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 359 YGSGDNSFGLGAGGYG 374
YG G S G G+GGYG
Sbjct: 362 YGGGYGSGG-GSGGYG 376
Score = 45 (20.9 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 357 FGYGSGDNSFGLGAG----GYGRNPGTTLAQSSSFAASNGGY 394
+G G N FG +G YG G + SS + GGY
Sbjct: 325 YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGY 366
Score = 39 (18.8 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 18/61 (29%), Positives = 21/61 (34%)
Query: 246 SFGANANFNSNLSYGRG---LSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWGNG 302
+FG NF YG G Y G Y G D +SS R +G G
Sbjct: 236 NFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNG-FGGDGGNYGGGPGYSS--RGGYGGG 292
Query: 303 G 303
G
Sbjct: 293 G 293
Score = 37 (18.1 bits), Expect = 2.9e-33, Sum P(3) = 2.9e-33
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 174 GPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
G +R GG G + Y G S+ GGYG
Sbjct: 254 GGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYG 290
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 303 (111.7 bits), Expect = 2.3e-33, Sum P(3) = 2.3e-33
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 56 (24.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ ++FG G G Y + G QSS+F GG G
Sbjct: 233 GFGNDGSNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 269
Score = 48 (22.0 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 361 SGDNSFGLG-AGGYGRNPGTTLAQSSSFAASNGGYDG 396
SG +FG G GG+G N + S GY+G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGIGDGYNG 233
Score = 44 (20.5 bits), Expect = 2.3e-33, Sum P(3) = 2.3e-33
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 250 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 294
Score = 42 (19.8 bits), Expect = 2.3e-33, Sum P(3) = 2.3e-33
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 248 GANANFNSNLSYGRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWGN 301
G F N ++GRG GN + G GY+ ++F + N +GN
Sbjct: 205 GRGGGFGGNDNFGRG------GNFSGRGIGDGYNGFGNDGSNFGGGGSYNDFGN 252
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 291 (107.5 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
Identities = 57/158 (36%), Positives = 93/158 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S+ T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+VE K+AV R++ +K+FVGG+ E + Y
Sbjct: 70 RPHSIDGRVVEPKRAVAREES----------GKPGAHVTVKKLFVGGIKEDTEEHHLRDY 119
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F ++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 120 FAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Score = 190 (71.9 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF+ YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 161 KYHTINGHNAEVRKALSRQE 180
Score = 157 (60.3 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 AVPKEL 171
A P +
Sbjct: 69 ARPHSI 74
Score = 79 (32.9 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASNGGYDG 396
GYGSG FG G GYG PG S + GGY G
Sbjct: 221 GYGSG-RGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGG 259
Score = 57 (25.1 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG G +G G GYG G ++ N G G + D
Sbjct: 249 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG-SGNYND 290
Score = 51 (23.0 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY-DG 396
+G GD S G G G +G PG+ S S G+ DG
Sbjct: 195 FGFGD-SRG-GGGNFGPGPGSNFRGGSDGYGSGRGFGDG 231
Score = 47 (21.6 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 181 GGYHYGLSRVNSFLNGYTQ---GYTPSTVGGYG 210
GG +YG N F N Y Q Y P G +G
Sbjct: 279 GGGNYGSGNYNDFGN-YNQQPSNYGPMKSGNFG 310
Score = 42 (19.8 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 252 NFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
NF + YG G Y G P YG+ G
Sbjct: 243 NFGGSPGYGGGRGGYGGGGPG-YGNQGG 269
Score = 39 (18.8 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
G N FG + N +G G + G + YGS G+
Sbjct: 192 GGNFGFGDSRGGGGN--FGPGPGSNFRGGSDGYGSGRGF 228
Score = 37 (18.1 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
GGY G + GY GY G YG
Sbjct: 255 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYG 284
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 303 (111.7 bits), Expect = 4.7e-33, Sum P(3) = 4.7e-33
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 3.6e-13, Sum P(3) = 3.6e-13
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 54 (24.1 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG G +G G+GG + G QSS+F GG G
Sbjct: 228 FGGSRGGGGYG-GSGGSYNDFGNYNNQSSNFGPMKGGNFG 266
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 47 (21.6 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
G+G DN FG G GR + S G Y+
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGGSYN 245
Score = 44 (20.5 bits), Expect = 4.7e-33, Sum P(3) = 4.7e-33
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 247 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 291
Score = 39 (18.8 bits), Expect = 4.7e-33, Sum P(3) = 4.7e-33
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 242 GLNPSFGANANFNSNLSYG--RGLSPY--YIGNPNRYGS 276
G N +FG NF+ +G RG Y G+ N +G+
Sbjct: 211 GGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGGSYNDFGN 249
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 297 (109.6 bits), Expect = 4.7e-33, Sum P(3) = 4.7e-33
Identities = 57/158 (36%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+VE K+AV R++ +K+FVGG+ E + Y
Sbjct: 81 RPHSIDGRVVEPKRAVAREES----------GKPGAHVTVKKLFVGGIKEDTEEHHLRDY 130
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 131 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 168
Score = 189 (71.6 bits), Expect = 1.6e-15, Sum P(3) = 1.6e-15
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 172 KYHTINGHNAEVRKALSRQE 191
Score = 157 (60.3 bits), Expect = 4.6e-11, Sum P(3) = 4.6e-11
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 166 AVPKEL 171
A P +
Sbjct: 80 ARPHSI 85
Score = 62 (26.9 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG 378
GYGSG FG G GYG PG
Sbjct: 232 GYGSG-RGFGDGYNGYGGGPG 251
Score = 51 (23.0 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY-DG 396
+G GD S G G G +G PG+ S S G+ DG
Sbjct: 206 FGFGD-SRG-GGGNFGPGPGSNFRGGSDGYGSGRGFGDG 242
Score = 50 (22.7 bits), Expect = 4.7e-33, Sum P(3) = 4.7e-33
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 358 GYGSGDNSFGLGAGG-YG 374
G+G G N +G G GG YG
Sbjct: 238 GFGDGYNGYGGGPGGNYG 255
Score = 47 (21.6 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 241 PGLNPSF-GANANFNSNLSYGRGLSPYYIGNPNRYGS 276
PG +F G + + S +G G + Y G YGS
Sbjct: 220 PGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGNYGS 256
Score = 39 (18.8 bits), Expect = 4.7e-33, Sum P(3) = 4.7e-33
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
G N FG + N +G G + G + YGS G+
Sbjct: 203 GGNFGFGDSRGGGGN--FGPGPGSNFRGGSDGYGSGRGF 239
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 296 (109.3 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 57/158 (36%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 18 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 77
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H IDGR+VE K+AV R++ +K+FVGG+ E + Y
Sbjct: 78 RPHTIDGRVVEPKRAVAREES----------GKPGAHVTVKKLFVGGIKEDTEEHHLRDY 127
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 128 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 165
Score = 190 (71.9 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 40/86 (46%), Positives = 55/86 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 109 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 168
Query: 66 EKHNIDGRMVEAKKAVPRDD-QIVLN 90
+ H I+G E +KA+ R + Q V N
Sbjct: 169 KYHTINGHNAEVRKALSRQEMQEVQN 194
Score = 156 (60.0 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 166 AVP 168
A P
Sbjct: 77 ARP 79
Score = 79 (32.9 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASNGGYDG 396
GYGSG FG G GYG PG S + GGY G
Sbjct: 229 GYGSG-RGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGG 267
Score = 57 (25.1 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG G +G G GYG G ++ N G G + D
Sbjct: 257 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG-SGNYND 298
Score = 47 (21.6 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 181 GGYHYGLSRVNSFLNGYTQ---GYTPSTVGGYG 210
GG +YG N F N Y Q Y P G +G
Sbjct: 287 GGGNYGSGNYNDFGN-YNQQPSNYGPMKSGNFG 318
Score = 47 (21.6 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 13/43 (30%), Positives = 15/43 (34%)
Query: 357 FGYGS---GDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG+G G +FG G G R F GY G
Sbjct: 203 FGFGDARGGGGNFGPGPGSNFRGGADGYGSGRGFGDGYNGYGG 245
Score = 42 (19.8 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 252 NFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
NF + YG G Y G P YG+ G
Sbjct: 251 NFGGSPGYGGGRGGYGGGGPG-YGNQGG 277
Score = 37 (18.1 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
GGY G + GY GY G YG
Sbjct: 263 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYG 292
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 280 (103.6 bits), Expect = 7.6e-33, Sum P(3) = 7.6e-33
Identities = 55/158 (34%), Positives = 93/158 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S +T EE LK Y+ +GE+ + V+++ + ++RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+V+ K+AV R+ +K+FVGG+ E ++Y
Sbjct: 82 RPHSIDGRVVDPKRAVSREKS----------EKQGSLVNVKKLFVGGIKEDTEEHHLREY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 132 FEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKI 169
Score = 184 (69.8 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L+EYF YG++ I+ DR +G+ RGFGFV F D V +I++Q
Sbjct: 113 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KA+ R +
Sbjct: 173 KYHAINGHRAEVGKALSRQE 192
Score = 153 (58.9 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+S TE K Y+ Q+G +TD VV+ +Q+ RGFGF+T+ S VD
Sbjct: 21 RKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
Score = 59 (25.8 bits), Expect = 7.6e-33, Sum P(3) = 7.6e-33
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGV 397
GYG N + GGYG N G Q S++ G GV
Sbjct: 286 GYG---NQWEFSGGGYGNNFGNYDQQPSNYGPMRNGIFGV 322
Score = 52 (23.4 bits), Expect = 4.0e-32, Sum P(3) = 4.0e-32
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASN-GGY 394
GYG+G S G GYG PG + N GGY
Sbjct: 233 GYGNGPESRD-GCHGYGGGPGGGNFGGYPCYGGGNFGGY 270
Score = 48 (22.0 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 359 YGSGDNS----FGLGAGGY-GRNPGTTLAQSSSFAASNGGYDGVFAD 400
YG G+ +G G G Y GR PG + + S GGY F +
Sbjct: 262 YGGGNFGGYPCYGGGGGEYAGRRPG----YGNQWEFSGGGYGNNFGN 304
Score = 48 (22.0 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGT 379
FG+ N G G +GR PGT
Sbjct: 207 FGFSVSSN----GGGNFGRGPGT 225
Score = 45 (20.9 bits), Expect = 7.6e-33, Sum P(3) = 7.6e-33
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 247 FGANANFNSNLSYGRGLSPYYIGNPNRYGS 276
FG + + N ++GRG + G + YG+
Sbjct: 207 FGFSVSSNGGGNFGRGPGTKFRGEADGYGN 236
Score = 45 (20.9 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 359 YGSGDNSFGLGAGGYGRNPG 378
YG G N G+GGYG G
Sbjct: 335 YGPGGNG---GSGGYGGGSG 351
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 325 (119.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 69/163 (42%), Positives = 98/163 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D A E
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V+ +K H +DGR+++ KKA+ V +KIFVGGL TE
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEE 168
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF +FG I + + D + RGF FIT+ EE V KV
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Score = 139 (54.0 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG++ + EE+++EYF +GE+ + D + RGF F+ F + + V+++
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 67 K-HNIDGRMVEAKKAVPRD 84
K H + G E K A P++
Sbjct: 215 KFHTVSGSKCEIKVAQPKE 233
Score = 47 (21.6 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 358 GYGSGDNSFGLGAGGY-GRNPGTTLAQ-SSSFAASN--GGY 394
GYG G + GY G PG +Q S+++ S GG+
Sbjct: 280 GYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGH 320
Score = 44 (20.5 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 196 GYTQGYTPSTVGGY 209
GY QGY P GGY
Sbjct: 276 GYQQGYGPG-YGGY 288
Score = 41 (19.5 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 358 GYGSGDN-SFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
G G G + S+ G G Y N G Q + GGYD
Sbjct: 254 GSGGGQSQSWNQGYGNYW-NQGYGYQQG--YGPGYGGYD 289
Score = 40 (19.1 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 244 NPSFGA--NANFNSNLSYGRGLSPYYIGNPNRYGSPLGYD 281
N +G N + YG G Y YG GYD
Sbjct: 264 NQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYD 303
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 281 (104.0 bits), Expect = 1.6e-32, Sum P(3) = 1.6e-32
Identities = 58/164 (35%), Positives = 93/164 (56%)
Query: 7 KLFIGGISWDTNEERLKEYFS-------TYGEVVEAVIMKDRNTGRARGFGFVVFADPAV 59
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V
Sbjct: 14 KLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEV 73
Query: 60 AEIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTE 119
+ H +DGR+VE K+AV R+D + +KIFVGG+ E
Sbjct: 74 DAAMCARPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTGE 123
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+ + YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 124 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 167
Score = 186 (70.5 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 111 KIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 170
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 171 KYHTINGHNCEVKKALSKQE 190
Score = 142 (55.0 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFD-------QFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
RK+F+GGL+ T+ +++F+ ++GT+TD VVM D T+R RGFGF+TY EE
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE 72
Query: 159 AVDKVKRAVPKEL 171
VD A P ++
Sbjct: 73 -VDAAMCARPHKV 84
Score = 67 (28.6 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
+G G N FG G GGYG G S+ +GGY+G D
Sbjct: 221 FGRGGN-FG-GRGGYGGGGG---GSRGSYGGGDGGYNGFGGD 257
Score = 61 (26.5 bits), Expect = 1.6e-32, Sum P(3) = 1.6e-32
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG--TTLAQSSSFAASNGGYDGVFAD 400
GYG G +G GGYG G + +F N G G + D
Sbjct: 272 GYGGGGPGYGNQGGGYGGGAGGYDGYNEGGNFGGGNYGGGGNYND 316
Score = 57 (25.1 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 359 YGSGD---NSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
YG GD N FG G YG PG + + GY
Sbjct: 244 YGGGDGGYNGFGGDGGNYGGGPG--YSSRGGYGGGGPGY 280
Score = 57 (25.1 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
+G G G +S G G GG G G Q + GGYDG
Sbjct: 261 YGGGPGYSSRG-GYGGGGPGYGN---QGGGYGGGAGGYDG 296
Score = 49 (22.3 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 360 GSGDNSFGLGAGGYGR--NPGTTLAQSSSFAASNGGYDG 396
G G N FG G G +GR N G S G Y G
Sbjct: 209 GHGGN-FGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 246
Score = 47 (21.6 bits), Expect = 4.4e-31, Sum P(3) = 4.4e-31
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 359 YGSGDNSFGLGAGGYG 374
YG G S G G+GGYG
Sbjct: 345 YGGGYGS-GSGSGGYG 359
Score = 45 (20.9 bits), Expect = 7.1e-31, Sum P(3) = 7.1e-31
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 357 FGYGSGDNSFGLGAG----GYGRNPGTTLAQSSSFAASNGGY 394
+G G N FG +G YG G + SS + GGY
Sbjct: 308 YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGY 349
Score = 39 (18.8 bits), Expect = 1.6e-32, Sum P(3) = 1.6e-32
Identities = 18/61 (29%), Positives = 21/61 (34%)
Query: 246 SFGANANFNSNLSYGRG---LSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWGNG 302
+FG NF YG G Y G Y G D +SS R +G G
Sbjct: 220 NFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNG-FGGDGGNYGGGPGYSS--RGGYGGG 276
Query: 303 G 303
G
Sbjct: 277 G 277
Score = 37 (18.1 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 174 GPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
G +R GG G + Y G S+ GGYG
Sbjct: 238 GGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYG 274
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 322 (118.4 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 68/163 (41%), Positives = 98/163 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D + E
Sbjct: 70 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 129
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V+ +K H +DGR+++ KKA+ V +KIFVGGL TE
Sbjct: 130 KVLDQKEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEE 172
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF QFG I + + D + RGF FIT+ E+ V KV
Sbjct: 173 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 215
Score = 137 (53.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMK-DRNTGRARGFGFVVFADPAVAEIVIQ 65
K+F+GG++ + EE+++EYF +GE+ EA+ + D + RGF F+ F + + V++
Sbjct: 159 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 66 EK-HNIDGRMVEAKKAVPRD 84
+K H + G E K A P++
Sbjct: 218 KKFHTVSGSKCEIKVAQPKE 237
Score = 47 (21.6 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 358 GYGSGDNSFGLGAGGY-GRNPGTTLAQ-SSSFAASN--GGY 394
GYG G + GY G PG +Q S+++ S GG+
Sbjct: 284 GYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGH 324
Score = 44 (20.5 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 196 GYTQGYTPSTVGGY 209
GY QGY P GGY
Sbjct: 280 GYQQGYGPG-YGGY 292
Score = 41 (19.5 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 358 GYGSGDN-SFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
G G G + S+ G G Y N G Q + GGYD
Sbjct: 258 GSGGGQSQSWNQGYGNYW-NQGYGYQQG--YGPGYGGYD 293
Score = 40 (19.1 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 244 NPSFGA--NANFNSNLSYGRGLSPYYIGNPNRYGSPLGYD 281
N +G N + YG G Y YG GYD
Sbjct: 268 NQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYD 307
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 322 (118.4 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 68/163 (41%), Positives = 98/163 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D + E
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V+ +K H +DGR+++ KKA+ V +KIFVGGL TE
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEE 173
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF QFG I + + D + RGF FIT+ E+ V KV
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216
Score = 137 (53.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMK-DRNTGRARGFGFVVFADPAVAEIVIQ 65
K+F+GG++ + EE+++EYF +GE+ EA+ + D + RGF F+ F + + V++
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 66 EK-HNIDGRMVEAKKAVPRD 84
+K H + G E K A P++
Sbjct: 219 KKFHTVSGSKCEIKVAQPKE 238
Score = 47 (21.6 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 358 GYGSGDNSFGLGAGGY-GRNPGTTLAQ-SSSFAASN--GGY 394
GYG G + GY G PG +Q S+++ S GG+
Sbjct: 285 GYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGH 325
Score = 44 (20.5 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 196 GYTQGYTPSTVGGY 209
GY QGY P GGY
Sbjct: 281 GYQQGYGPG-YGGY 293
Score = 41 (19.5 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 358 GYGSGDN-SFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
G G G + S+ G G Y N G Q + GGYD
Sbjct: 259 GSGGGQSQSWNQGYGNYW-NQGYGYQQG--YGPGYGGYD 294
Score = 40 (19.1 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 244 NPSFGA--NANFNSNLSYGRGLSPYYIGNPNRYGSPLGYD 281
N +G N + YG G Y YG GYD
Sbjct: 269 NQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYD 308
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 295 (108.9 bits), Expect = 3.2e-32, Sum P(3) = 3.2e-32
Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDAAM 93
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Score = 186 (70.5 bits), Expect = 2.6e-14, Sum P(3) = 2.6e-14
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 164 (62.8 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 166 AVPKEL 171
A P ++
Sbjct: 95 ARPHKV 100
Score = 53 (23.7 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
+G G N FG G GGYG G S+ N G G + D
Sbjct: 237 FGRGGN-FG-GRGGYGGGGG---GSRGSYGGGNYGGGGNYND 273
Score = 49 (22.3 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 360 GSGDNSFGLGAGGYGR--NPGTTLAQSSSFAASNGGYDG 396
G G N FG G G +GR N G S G Y G
Sbjct: 225 GRGGN-FGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
Score = 46 (21.3 bits), Expect = 3.2e-32, Sum P(3) = 3.2e-32
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 359 YGSGDNSFGLGAGGYG 374
YG G S G G+GGYG
Sbjct: 302 YGGGYGSGG-GSGGYG 316
Score = 45 (20.9 bits), Expect = 4.0e-32, Sum P(3) = 4.0e-32
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 357 FGYGSGDNSFGLGAG----GYGRNPGTTLAQSSSFAASNGGY 394
+G G N FG +G YG G + SS + GGY
Sbjct: 265 YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGY 306
Score = 37 (18.1 bits), Expect = 3.2e-32, Sum P(3) = 3.2e-32
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 246 SFGANANFNSNLSYGRG 262
+FG NF YG G
Sbjct: 236 NFGRGGNFGGRGGYGGG 252
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 318 (117.0 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 69/164 (42%), Positives = 99/164 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D A E
Sbjct: 65 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 124
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGL-ASTVTE 119
V+ +K H +DGR+++ KKA+ V +KIFVGGL + TE
Sbjct: 125 KVLDQKEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPESPTE 167
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF +FG I + + D + RGF FIT+ EE V KV
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Score = 131 (51.2 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 7 KLFIGGISWDT-NEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ 65
K+F+GG++ ++ EE+++EYF +GE+ + D + RGF F+ F + + V++
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 66 EK-HNIDGRMVEAKKAVPRD 84
+K H + G E K A P++
Sbjct: 214 KKFHTVSGSKCEIKVAQPKE 233
Score = 47 (21.6 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 358 GYGSGDNSFGLGAGGY-GRNPGTTLAQ-SSSFAASN--GGY 394
GYG G + GY G PG +Q S+++ S GG+
Sbjct: 285 GYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGH 325
Score = 44 (20.5 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 196 GYTQGYTPSTVGGY 209
GY QGY P GGY
Sbjct: 281 GYQQGYGPG-YGGY 293
Score = 40 (19.1 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
G G S+ G G Y N G Q + GGYD
Sbjct: 260 GGGGQSQSWNQGYGNYW-NQGYGYQQG--YGPGYGGYD 294
Score = 40 (19.1 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 244 NPSFGA--NANFNSNLSYGRGLSPYYIGNPNRYGSPLGYD 281
N +G N + YG G Y YG GYD
Sbjct: 269 NQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYD 308
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 316 (116.3 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 83/226 (36%), Positives = 117/226 (51%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+SWDT+++ LK+YF+ +GEV + I D NTGR+RGFGF++F +P E V+++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K H +DGR+++ KKA+ V +KIFVGGL TE ++Y
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEEKIREY 103
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------KRAVPKE 170
F +FG I + + D T + RGF FIT+ E+ V KV K A PKE
Sbjct: 104 FGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKE 163
Query: 171 L------SPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
+ S G R GG G R + + QGY GYG
Sbjct: 164 VYQQQQFSSGGGRGSYGGRGRG-GRGGAQSQNWNQGYGNYWNQGYG 208
Score = 49 (22.3 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSS 386
GYG D S G G YG PG +Q S+
Sbjct: 220 GYGGYDYS---GYGYYGYGPGYDYSQGSA 245
Score = 43 (20.2 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 358 GYGSGDNSFGLGAGGYG 374
GYG+ + G GGYG
Sbjct: 206 GYGNQGYGYQQGYGGYG 222
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 323 (118.8 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 68/163 (41%), Positives = 98/163 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D E
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVE 125
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V+ +K H +DGR+++ KKA+ V +KIFVGGL TE
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEE 168
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF +FG I + + D + + RGF FIT+ EE V KV
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKV 211
Score = 142 (55.0 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG++ + EE+++EYF +GE+ + D + + RGF F+ F + + V+++
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 214
Query: 67 K-HNIDGRMVEAKKAVPRD 84
K H I G E K A P++
Sbjct: 215 KFHTISGSKCEIKVAQPKE 233
Score = 41 (19.5 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 358 GYGSGDNSFGLGAGGYGRN 376
G G G S G G+ YG++
Sbjct: 254 GSGGGGGSGGQGSTNYGKS 272
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 325 (119.5 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 69/163 (42%), Positives = 98/163 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D A E
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V+ +K H +DGR+++ KKA+ V +KIFVGGL TE
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEE 168
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF +FG I + + D + RGF FIT+ EE V KV
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Score = 139 (54.0 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG++ + EE+++EYF +GE+ + D + RGF F+ F + + V+++
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 67 K-HNIDGRMVEAKKAVPRD 84
K H + G E K A P++
Sbjct: 215 KFHTVSGSKCEIKVAQPKE 233
Score = 37 (18.1 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 360 GSGDNSFGLGAGGYGRN 376
GSG G G+ YG++
Sbjct: 254 GSGGGGGGQGSTNYGKS 270
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 315 (115.9 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 67/158 (42%), Positives = 96/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D A E V+ +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K H +DGR+++ KKA+ V +KIFVGGL TE ++Y
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEEKIREY 103
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F +FG I + + D + + RGF FIT+ EE V KV
Sbjct: 104 FGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKV 141
Score = 125 (49.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG++ + EE+++EYF +GE+ + D + + RGF F+ F + + V+++
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 144
Query: 67 K-HNIDG 72
K H I G
Sbjct: 145 KFHTISG 151
Score = 47 (21.6 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 358 GYGSGDNSFGLGAGGY-GRNPGTTLAQ-SSSFAASN--GGY 394
GYG G + GY G PG +Q S+++ S GG+
Sbjct: 217 GYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGH 257
Score = 44 (20.5 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 196 GYTQGYTPSTVGGY 209
GY QGY P GGY
Sbjct: 213 GYQQGYGPG-YGGY 225
Score = 40 (19.1 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 244 NPSFGA--NANFNSNLSYGRGLSPYYIGNPNRYGSPLGYD 281
N +G N + YG G Y YG GYD
Sbjct: 201 NQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYD 240
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 310 (114.2 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 68/174 (39%), Positives = 99/174 (56%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D+GK+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V++ K H +DG++++ K+A +K+FVGGL+ +E
Sbjct: 204 KVLELKEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPDTSEE 247
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPG 174
K+YF FG I ++ + D T RGF FITY EE V K+ + ++ G
Sbjct: 248 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 301
Score = 52 (23.4 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 358 GYGSGD-NSFGLGAGGYGRNPGTTLAQSSSFA-ASNGG 393
GYG D + G GYG+ Q S++ AS GG
Sbjct: 373 GYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGG 410
Score = 39 (18.8 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 248 GANANFNSNLSYGRGLSPY---YIGNPNRYGSPLGYD 281
G N N N Y +G Y Y G+ N Y GYD
Sbjct: 343 GQNWNQGFNNYYDQGYGNYNSAYGGDQN-YSGYGGYD 378
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 310 (114.2 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 68/174 (39%), Positives = 99/174 (56%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D+GK+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V++ K H +DG++++ K+A +K+FVGGL+ +E
Sbjct: 204 KVLELKEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPDTSEE 247
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPG 174
K+YF FG I ++ + D T RGF FITY EE V K+ + ++ G
Sbjct: 248 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 301
Score = 52 (23.4 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 358 GYGSGD-NSFGLGAGGYGRNPGTTLAQSSSFA-ASNGG 393
GYG D + G GYG+ Q S++ AS GG
Sbjct: 373 GYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGG 410
Score = 39 (18.8 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 248 GANANFNSNLSYGRGLSPY---YIGNPNRYGSPLGYD 281
G N N N Y +G Y Y G+ N Y GYD
Sbjct: 343 GQNWNQGFNNYYDQGYGNYNSAYGGDQN-YSGYGGYD 378
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 310 (114.2 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 68/174 (39%), Positives = 99/174 (56%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D+GK+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V++ K H +DG++++ K+A +K+FVGGL+ +E
Sbjct: 204 KVLELKEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPDTSEE 247
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPG 174
K+YF FG I ++ + D T RGF FITY EE V K+ + ++ G
Sbjct: 248 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 301
Score = 52 (23.4 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 358 GYGSGD-NSFGLGAGGYGRNPGTTLAQSSSFA-ASNGG 393
GYG D + G GYG+ Q S++ AS GG
Sbjct: 373 GYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGG 410
Score = 39 (18.8 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 248 GANANFNSNLSYGRGLSPY---YIGNPNRYGSPLGYD 281
G N N N Y +G Y Y G+ N Y GYD
Sbjct: 343 GQNWNQGFNNYYDQGYGNYNSAYGGDQN-YSGYGGYD 378
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 310 (114.2 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 68/174 (39%), Positives = 99/174 (56%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D+GK+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 25 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 84
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V++ K H +DG++++ K+A +K+FVGGL+ +E
Sbjct: 85 KVLELKEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPDTSEE 128
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPG 174
K+YF FG I ++ + D T RGF FITY EE V K+ + ++ G
Sbjct: 129 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 182
Score = 52 (23.4 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 358 GYGSGD-NSFGLGAGGYGRNPGTTLAQSSSFA-ASNGG 393
GYG D + G GYG+ Q S++ AS GG
Sbjct: 254 GYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGG 291
Score = 39 (18.8 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 248 GANANFNSNLSYGRGLSPY---YIGNPNRYGSPLGYD 281
G N N N Y +G Y Y G+ N Y GYD
Sbjct: 224 GQNWNQGFNNYYDQGYGNYNSAYGGDQN-YSGYGGYD 259
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 319 (117.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 68/163 (41%), Positives = 98/163 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I NTGR++GFGF++F D A E
Sbjct: 60 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVE 119
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V+ +K H +DGR+++ KKA+ V +KIFVGGL TE
Sbjct: 120 KVLDQKEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEE 162
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF +FG I + + D T + RGF FIT+ EE V KV
Sbjct: 163 KIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKV 205
Score = 146 (56.5 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG++ + EE+++EYF +GE+ + D T + RGF F+ F + + V+++
Sbjct: 149 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEK 208
Query: 67 K-HNIDGRMVEAKKAVPRD 84
K H I G E K A P++
Sbjct: 209 KFHTISGSKCEIKVAQPKE 227
Score = 41 (19.5 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 358 GYGSGDNSFGLGAGGYGRN 376
G G G S G G+ YG++
Sbjct: 248 GSGGGGGSGGQGSTNYGKS 266
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 315 (115.9 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 57/157 (36%), Positives = 102/157 (64%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG++ +T ++ ++E++S +GE+ + ++M+D T R+RGFGFV F+ + +++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H IDG+ V+ K+AVPRDD+ NR T++++V G+ TE +Y
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDK---NRSESNVS-------TKRLYVSGVREDHTEDMLTEY 133
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
F ++GT+T ++ D TQ+PRGFGF+T+D ++VD+
Sbjct: 134 FTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQ 170
Score = 170 (64.9 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RKIFVGGL S T+ ++++ QFG ITD++VM D T+R RGFGF+T+ + VD +
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 166 AVPKELSPGPTRSP 179
P + G T P
Sbjct: 83 QRP-HIIDGKTVDP 95
Score = 159 (61.0 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
+L++ G+ D E+ L EYF+ YG V ++ I+ D+ T + RGFGFV F D +V + V+Q
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G + +K + +D+
Sbjct: 175 KSHMVNGHRCDVRKGLSKDE 194
Score = 45 (20.9 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 14/41 (34%), Positives = 15/41 (36%)
Query: 358 GYGSGDNSFGLGAGGYG--RNPGTTLAQSSSFAASNGGYDG 396
G G N G G GG+G G A GGY G
Sbjct: 214 GQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGG 254
Score = 43 (20.2 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G+ G G GGYG + G Q GG+ G
Sbjct: 237 GPGAYGGPGGGGQGGYGGDYGGGWGQQGG--GGQGGWGG 273
Score = 41 (19.5 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 248 GANANFNSNLSYGRGLS-PYYIGNPNRYGSPLG 279
G +N G G P G P YG P G
Sbjct: 214 GQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGG 246
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 262 (97.3 bits), Expect = 2.7e-31, Sum P(3) = 2.7e-31
Identities = 56/158 (35%), Positives = 92/158 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFI G+S++T +E L+ +F +G + V+M+D NT R+RGFGFV+FA + +
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74
Query: 67 KHN-IDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ N ++GR++E K+ V R+D R +KIFVGG+ E + Y
Sbjct: 75 RPNKVNGRVLEPKRFVSREDS---QRPAAYLT-------VKKIFVGGIKEDTEEHE--DY 122
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G + VM D + + RGF F+T+D+ ++VD++
Sbjct: 123 FEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQI 160
Score = 156 (60.0 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 34/82 (41%), Positives = 53/82 (64%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYG--EVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIV 63
K+F+GGI DT E ++YF YG EV+E +M D+ +G+ RGF FV F + +V +IV
Sbjct: 106 KIFVGGIKEDTEEH--EDYFEQYGKFEVIE--VMTDQGSGKKRGFAFVTFDNHDSVDQIV 161
Query: 64 IQEKHNIDGRMVEAKKAVPRDD 85
IQ+ H ++G E +KA+ + +
Sbjct: 162 IQKYHTVNGHSCEVRKALLKQE 183
Score = 148 (57.2 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+ GL+ T+ + +F+Q+GT+T VVM D NT+R RGFGF+ + + E VD A
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74
Query: 167 VPKELS 172
P +++
Sbjct: 75 RPNKVN 80
Score = 57 (25.1 bits), Expect = 2.7e-31, Sum P(3) = 2.7e-31
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPL-GYDXXXXXXTSFFSSVTRNLWG 300
G FG N NF+ + + RG G YG GY+ ++F V+ N +G
Sbjct: 203 GRGGGFGGNDNFDHDNHWSRGFGGSRSGGG--YGGNADGYNGFDNDGSNFGGGVSYNDFG 260
Query: 301 N 301
N
Sbjct: 261 N 261
Score = 50 (22.7 bits), Expect = 2.7e-31, Sum P(3) = 2.7e-31
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GRN G FA + GGY G
Sbjct: 259 FGNYNNQSSNFGPTKGGNFGGRNSGPYGGGGQYFAKPRNQGGYGG 303
Score = 50 (22.7 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 358 GYGSGDNSFGLGAGGYGRNP-GTTLAQSSSFAASNGGYDG 396
GY DN GG N G QSS+F + GG G
Sbjct: 239 GYNGFDNDGSNFGGGVSYNDFGNYNNQSSNFGPTKGGNFG 278
Score = 47 (21.6 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 361 SGDNSFGLG-AGGYGRNPGTTLAQ--SSSFAASN--GGYDG 396
SG +FG G GG+G N S F S GGY G
Sbjct: 195 SGSGNFGGGRGGGFGGNDNFDHDNHWSRGFGGSRSGGGYGG 235
Score = 41 (19.5 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 248 GANANFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
G N N ++G G+S GN N S G
Sbjct: 239 GYNGFDNDGSNFGGGVSYNDFGNYNNQSSNFG 270
Score = 37 (18.1 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 139 YDHNTQRPRGFG 150
+DH+ RGFG
Sbjct: 214 FDHDNHWSRGFG 225
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 315 (115.9 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 65/158 (41%), Positives = 96/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+SWDT+++ LK+YF+ +GEV + I D NTGR+RGFGF++F +P E V+++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K H +DGR+++ KKA+ V +KIFVGGL TE ++Y
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEEKIREY 103
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F +FG I + + D T + RGF FIT+ E+ V KV
Sbjct: 104 FGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKV 141
Score = 150 (57.9 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG++ + EE+++EYF +GE+ + D T + RGF F+ F + + V+++
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK 144
Query: 67 K-HNIDGRMVEAKKAVPRD 84
K HN+ G E K A P++
Sbjct: 145 KFHNVSGSKCEIKVAQPKE 163
Score = 44 (20.5 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 358 GYGSGDNSFGLGAGGYGRNP 377
G G G G G+ YG+ P
Sbjct: 181 GRGRGGRGGGQGSANYGKTP 200
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 303 (111.7 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 56 (24.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ ++FG G G Y + G QSS+F GG G
Sbjct: 246 GFGNDGSNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 282
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 48 (22.0 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 242 GLNPSFGANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWG 300
G FG N NF ++ GRG G GS GY+ ++F + N +G
Sbjct: 205 GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFG 264
Query: 301 N 301
N
Sbjct: 265 N 265
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 303 (111.7 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 56 (24.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ ++FG G G Y + G QSS+F GG G
Sbjct: 246 GFGNDGSNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 282
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 48 (22.0 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 242 GLNPSFGANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWG 300
G FG N NF ++ GRG G GS GY+ ++F + N +G
Sbjct: 205 GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFG 264
Query: 301 N 301
N
Sbjct: 265 N 265
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 348 (127.6 bits), Expect = 4.8e-31, P = 4.8e-31
Identities = 66/159 (41%), Positives = 102/159 (64%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ 65
GKLF+GG+SW T+ ++LKEYF+ +G V + +IMKD T R+RGFGF+ F +P E V++
Sbjct: 203 GKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLK 262
Query: 66 EK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKK 124
H +DG+ ++ K A P+ NR +T+KIFVGG++ + + K
Sbjct: 263 VPIHTLDGKKIDPKHATPK------NRPRQAN-------KTKKIFVGGVSQDTSAEEVKA 309
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF QFG + + V++ D T+R RGFGF+T+++E+ VD+V
Sbjct: 310 YFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRV 348
Score = 180 (68.4 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 36/79 (45%), Positives = 51/79 (64%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ- 65
K+F+GG+S DT+ E +K YFS +G V E V++ D+ T R RGFGFV F + V + V +
Sbjct: 292 KIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEI 351
Query: 66 EKHNIDGRMVEAKKAVPRD 84
H I + VE KKA P++
Sbjct: 352 HFHTIKNKKVECKKAQPKE 370
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 313 (115.2 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 74/182 (40%), Positives = 102/182 (56%)
Query: 20 ERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEIVIQEKHNIDGRMVEAK 78
E L+EYF +GEV E ++M+D T R+RGFGFV F D A V +++ Q +H +D + ++ K
Sbjct: 1 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 79 KAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVM 138
A PR Q + RT+KIFVGGL+ T D K YF+QFG + D ++M
Sbjct: 61 VAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLM 108
Query: 139 YDHNTQRPRGFGFITYDSEEAVDKV----------KRAVPKELSPGPTRSPLGGYHYGLS 188
+D T R RGFGF+T++SE+ V+KV K K+ P SP G G S
Sbjct: 109 FDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSAR-GRS 167
Query: 189 RV 190
RV
Sbjct: 168 RV 169
Score = 179 (68.1 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 35/79 (44%), Positives = 52/79 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ- 65
K+F+GG+S +T E +K YF +G+V +A++M D+ T R RGFGFV F + E V +
Sbjct: 77 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 66 EKHNIDGRMVEAKKAVPRD 84
H I+ +MVE KKA P++
Sbjct: 137 HFHEINNKMVECKKAQPKE 155
Score = 44 (20.5 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 172 SPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDG 215
SPGP + L YG + +S ++ Y +P+ G+G + G
Sbjct: 279 SPGPM-AEL----YGAANQDSGVSSYISAASPAPSTGFGHSLGG 317
Score = 41 (19.5 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
YG G+G GY TT A S S+ GY F +
Sbjct: 172 YGMDAFMLGIGMLGYPGFQATTYA-SRSYTGLAPGYTYQFPE 212
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 313 (115.2 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 69/174 (39%), Positives = 99/174 (56%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D+GK+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D A E
Sbjct: 62 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVE 121
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V++ K H +DG++++ K+A +K+FVGGL+ +E
Sbjct: 122 KVLELKEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPDTSEE 165
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPG 174
K+YF FG I ++ + D T RGF FITY EE V K+ + ++ G
Sbjct: 166 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 219
Score = 44 (20.5 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 360 GSGDNSFGLGAG-GYGRNPGTTLAQ--SSSFAASNGGYDGVFAD 400
G + S G G G G GR G Q ++ + G Y+ ++D
Sbjct: 242 GKSNASGGRGGGRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYSD 285
Score = 43 (20.2 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 256 NLSYGRGLSPYYIGNPNRYG 275
N YG G + Y G + YG
Sbjct: 303 NYGYGPGYTDYSAGQQSTYG 322
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 313 (115.2 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 69/174 (39%), Positives = 99/174 (56%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D+GK+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D A E
Sbjct: 26 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVE 85
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V++ K H +DG++++ K+A +K+FVGGL+ +E
Sbjct: 86 KVLELKEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPDTSEE 129
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPG 174
K+YF FG I ++ + D T RGF FITY EE V K+ + ++ G
Sbjct: 130 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 183
Score = 44 (20.5 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 360 GSGDNSFGLGAG-GYGRNPGTTLAQ--SSSFAASNGGYDGVFAD 400
G + S G G G G GR G Q ++ + G Y+ ++D
Sbjct: 206 GKSNASGGRGGGRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYSD 249
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 301 (111.0 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 60/158 (37%), Positives = 93/158 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D +VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKI 162
Score = 183 (69.5 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 56 (24.8 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ ++FG G G Y + G QSS+F GG G
Sbjct: 246 GFGNDGSNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 282
Score = 52 (23.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 48 (22.0 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 242 GLNPSFGANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWG 300
G FG N NF ++ GRG G GS GY+ ++F + N +G
Sbjct: 205 GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFG 264
Query: 301 N 301
N
Sbjct: 265 N 265
Score = 37 (18.1 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 179 PLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
P+ G ++G + + G P GGYG
Sbjct: 275 PMKGGNFGGRSLGPYGGGGQYFAKPRNQGGYG 306
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 295 (108.9 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDAAM 71
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 72 CARPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 161
Score = 186 (70.5 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 105 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 164
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 165 KYHTINGHNCEVKKALSKQE 184
Score = 164 (62.8 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 166 AVPKEL 171
A P ++
Sbjct: 73 ARPHKV 78
Score = 62 (26.9 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTT-LAQSSSFAASNGGYDGVFAD 400
GYG G +G GGYG G + +F N G G + D
Sbjct: 232 GYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYND 275
Score = 54 (24.1 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
+G G +FG G G YG PG + S GGY G
Sbjct: 208 FGGGGGNFGRG-GNYGGGPGYS---------SRGGYGG 235
Score = 50 (22.7 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
+G G G +S G G GG G G Q + GGYDG
Sbjct: 221 YGGGPGYSSRG-GYGGGGPGYGN---QGGGYGGG-GGYDG 255
Score = 46 (21.3 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 359 YGSGDNSFGLGAGGYG 374
YG G S G G+GGYG
Sbjct: 304 YGGGYGSGG-GSGGYG 318
Score = 45 (20.9 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 357 FGYGSGDNSFGLGAG----GYGRNPGTTLAQSSSFAASNGGY 394
+G G N FG +G YG G + SS + GGY
Sbjct: 267 YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGY 308
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 254 (94.5 bits), Expect = 5.6e-31, Sum P(3) = 5.6e-31
Identities = 51/163 (31%), Positives = 90/163 (55%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M++ KLF+GG++ T ++ L+ +F YG++ + V+++++ R+R FGFV ++ P A
Sbjct: 5 MENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEA 64
Query: 61 EIVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTE 119
+ + + H +DG VE K+AV R+D + +KIF+GGL + E
Sbjct: 65 DSAMSARPHILDGNNVELKRAVARED----------AGKPEALAKVKKIFIGGLKDDIEE 114
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
+ F QFG + V+ D T + RGFGF+ ++ ++ DK
Sbjct: 115 DHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADK 157
Score = 169 (64.5 bits), Expect = 4.0e-15, Sum P(3) = 4.0e-15
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE-IVIQ 65
K+FIGG+ D E+ L++ FS +G V +A ++ D+ TG+ RGFGFV F D A+ V+
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVL 161
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G VE KKA+ + +
Sbjct: 162 KFHMINGHKVEVKKALTKQE 181
Score = 135 (52.6 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL T+ + +F+Q+G +TD VV+ + +R R FGF+TY S + D A
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 167 VP 168
P
Sbjct: 71 RP 72
Score = 66 (28.3 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 358 GYGSGDNSFG-LGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG +G G GGYG N G + GGY G + D
Sbjct: 207 GYGGRGGGYGNYGGGGYGGNDGYGGGYGGGYG---GGYGGGYGD 247
Score = 58 (25.5 bits), Expect = 5.6e-31, Sum P(3) = 5.6e-31
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 357 FGYGSGDNSFGLGAG----GYGRNPGTTLAQSSSFAASNGGYDG 396
+G G+G N FG G G GYG G +S++ + GG G
Sbjct: 252 YGGGNGYNDFGSGYGQQSSGYGPMKGNYSGRSNAPYSRGGGGGG 295
Score = 58 (25.5 bits), Expect = 6.1e-30, Sum P(3) = 6.1e-30
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 357 FGYGSGDNSFGLGAGGYGRNP-GTTLAQSSS-FAASNGGYDG 396
+G G GD G G GG G N G+ Q SS + G Y G
Sbjct: 241 YGGGYGDQMEGYG-GGNGYNDFGSGYGQQSSGYGPMKGNYSG 281
Score = 56 (24.8 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAAS-NGGYDG 396
G G N +G GGYG G + + GGY G
Sbjct: 200 GMGRPQNGYGGRGGGYGNYGGGGYGGNDGYGGGYGGGYGG 239
Score = 54 (24.1 bits), Expect = 5.6e-31, Sum P(3) = 5.6e-31
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDG 215
GG YG + + + GY GY GGYG +M+G
Sbjct: 219 GGGGYGGN--DGYGGGYGGGYGGGYGGGYGDQMEG 251
Score = 52 (23.4 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLG-AGGYGRNPGTTLA-QSSSFAASNGGYD 395
GYG G++ +G G GGYG G Q + NG D
Sbjct: 222 GYG-GNDGYGGGYGGGYGGGYGGGYGDQMEGYGGGNGYND 260
Score = 44 (20.5 bits), Expect = 6.1e-30, Sum P(3) = 6.1e-30
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 162 KVKRAVPK-EL----SPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
+VK+A+ K E+ S G R GG G+ R + G GY GGYG
Sbjct: 172 EVKKALTKQEMQAAGSRGGGRGGRGGGR-GMGRPQNGYGGRGGGYGNYGGGGYG 224
Score = 43 (20.2 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 359 YGSGDNSFGLGAGGYG 374
Y G G G GGYG
Sbjct: 287 YSRGGGGGGYGRGGYG 302
Score = 41 (19.5 bits), Expect = 3.2e-29, Sum P(3) = 3.2e-29
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 358 GYGSGDNSFGLGAGGYGR 375
G + S G G GGYGR
Sbjct: 281 GRSNAPYSRGGGGGGYGR 298
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 298 (110.0 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 57/158 (36%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ + +
Sbjct: 22 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D + +KIFVGG+ E + ++Y
Sbjct: 82 RPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLREY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 132 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 169
Score = 189 (71.6 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 36/80 (45%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L+EYF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 113 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 173 KYHTINGHNCEVKKALSKQE 192
Score = 166 (63.5 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 21 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 80
Query: 166 AVPKEL 171
A P ++
Sbjct: 81 ARPHKV 86
Score = 58 (25.5 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 358 GYGSGDNSF----GLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G G +F G GG G PG + GGYDG
Sbjct: 201 GRGGGSGNFMGRGNFGGGGGGGGPGYG-NPGGGYGGGGGGYDG 242
Score = 57 (25.1 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 358 GYGSGDNSFGLGAGGY-GRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG+ +G G GGY G N G +F N G G + D
Sbjct: 225 GYGNPGGGYGGGGGGYDGYNEG------GNFGGGNYGGSGNYND 262
Score = 47 (21.6 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 359 YGSGDNSFGLGAGGYG 374
YG G S G G+GGYG
Sbjct: 292 YGGGYGS-GSGSGGYG 306
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 303 (111.7 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 124
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 184 (69.8 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
Score = 176 (67.0 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 52 (23.4 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + S GY+G
Sbjct: 209 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
Score = 50 (22.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 197 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Score = 47 (21.6 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 358 GYG-SGDNSFGLGA-GGYG 374
GYG SGD G G GGYG
Sbjct: 236 GYGGSGDGYNGFGNDGGYG 254
Score = 42 (19.8 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 242 GLNPSFGANANFNSNLSYG--RGLSPYY-IGNP-NRYGSPLGY 280
G N +FG NF+ +G RG Y G+ N +G+ GY
Sbjct: 211 GGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGY 253
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 298 (110.0 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 83/280 (29%), Positives = 128/280 (45%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+VE K+AV R++ +K+FVGG+ E + Y
Sbjct: 82 RPHSIDGRVVEPKRAVAREES----------GKPGAHVTVKKLFVGGIKEDTEEHHLRDY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSP--GPTRSPLGGY 183
F+++G I + ++ D + + RGFGF+T+D + VDK+ ++ R L
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQ 191
Query: 184 HYGLSRVNSFLNGY--TQGYTPSTVGGYGLRMDGRFSPVAXXXXXXXXXXXXXXXXXIEP 241
+ V S +G G+ S GG G F P
Sbjct: 192 E--MQEVQSSRSGRGGNFGFGDSRGGG------GNFGP-GPGSNFRGGSDGYGSGRGFGD 242
Query: 242 GLNPSFGA--NANFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
G N G NF + YG G Y G P YG+ G
Sbjct: 243 GYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPG-YGNQGG 281
Score = 157 (60.3 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
Score = 79 (32.9 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASNGGYDG 396
GYGSG FG G GYG PG S + GGY G
Sbjct: 233 GYGSG-RGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGG 271
Score = 57 (25.1 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG G +G G GYG G ++ N G G + D
Sbjct: 261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG-SGNYND 302
Score = 51 (23.0 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY-DG 396
+G GD S G G G +G PG+ S S G+ DG
Sbjct: 207 FGFGD-SRG-GGGNFGPGPGSNFRGGSDGYGSGRGFGDG 243
Score = 47 (21.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 181 GGYHYGLSRVNSFLNGYTQ---GYTPSTVGGYG 210
GG +YG N F N Y Q Y P G +G
Sbjct: 291 GGGNYGSGNYNDFGN-YNQQPSNYGPMKSGNFG 322
Score = 39 (18.8 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
G N FG + N +G G + G + YGS G+
Sbjct: 204 GGNFGFGDSRGGGGN--FGPGPGSNFRGGSDGYGSGRGF 240
Score = 37 (18.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
GGY G + GY GY G YG
Sbjct: 267 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYG 296
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 298 (110.0 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 57/158 (36%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ + +
Sbjct: 10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 69
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D + +KIFVGG+ E + ++Y
Sbjct: 70 RPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLREY 119
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 120 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 157
Score = 189 (71.6 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 36/80 (45%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L+EYF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 101 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 160
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 161 KYHTINGHNCEVKKALSKQE 180
Score = 166 (63.5 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 9 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 68
Query: 166 AVPKEL 171
A P ++
Sbjct: 69 ARPHKV 74
Score = 56 (24.8 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
+G G N FG G GGYG G SF +G Y+G F D
Sbjct: 209 FGRGGN-FG-GRGGYGGGGGGG-GSRGSFGGGDG-YNG-FGD 245
Score = 45 (20.9 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 359 YGSGDNSFGLGAGGYG 374
+G GD G G G YG
Sbjct: 234 FGGGDGYNGFGDGNYG 249
Score = 44 (20.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 362 GDNSFGLGAGGYGRNPGTTLAQSSSFAASNGG 393
G +FG G G +GR G + GG
Sbjct: 198 GRGNFGGGGGNFGR--GGNFGGRGGYGGGGGG 227
Score = 38 (18.4 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 246 SFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGYD 281
+FG NF YG G G+ +G GY+
Sbjct: 208 NFGRGGNFGGRGGYGGGGGGG--GSRGSFGGGDGYN 241
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 309 (113.8 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 73/182 (40%), Positives = 102/182 (56%)
Query: 20 ERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEIVIQEKHNIDGRMVEAK 78
E L+EYF +GE E ++M+D T R+RGFGFV F D A V +++ Q +H +D + ++ K
Sbjct: 1 EGLREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 79 KAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVM 138
A PR Q + RT+KIFVGGL+ T D K+YF+QFG + D ++M
Sbjct: 61 VAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 108
Query: 139 YDHNTQRPRGFGFITYDSEEAVDKV----------KRAVPKELSPGPTRSPLGGYHYGLS 188
+D T R RGFGF+T++SE+ V+KV K K+ P SP G G S
Sbjct: 109 FDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSAR-GRS 167
Query: 189 RV 190
RV
Sbjct: 168 RV 169
Score = 181 (68.8 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ- 65
K+F+GG+S +T E +K+YF +G+V +A++M D+ T R RGFGFV F + E V +
Sbjct: 77 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 66 EKHNIDGRMVEAKKAVPRD 84
H I+ +MVE KKA P++
Sbjct: 137 HFHEINNKMVECKKAQPKE 155
Score = 44 (20.5 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 172 SPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDG 215
SPGP + L YG + +S ++ Y +P+ G+G + G
Sbjct: 282 SPGPM-AEL----YGATNQDSGVSSYISAASPAPSTGFGHSLGG 320
Score = 41 (19.5 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
YG G+G GY TT A S S+ GY F +
Sbjct: 172 YGMDAFMLGIGMLGYPGFQATTYA-SRSYTGLAPGYTYQFPE 212
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 302 (111.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 58/157 (36%), Positives = 93/157 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V +
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCAR 73
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
H +DGR+VE K+AV R+D + +KIFVGG+ E + + YF
Sbjct: 74 PHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTGEYNLRDYF 123
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 124 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 160
Score = 186 (70.5 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 104 KIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 163
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 164 KYHTINGHNCEVKKALSKQE 183
Score = 161 (61.7 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F ++GT+TD VVM D T+R RGFGF+TY EE VD
Sbjct: 13 RKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE-VDAAMC 71
Query: 166 AVPKEL 171
A P ++
Sbjct: 72 ARPHKV 77
Score = 51 (23.0 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G N FG G G +GR G +S + GGY G
Sbjct: 202 GHGGN-FGGGGGNFGRG-G-----NSGYGNQGGGYGG 231
Score = 44 (20.5 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 357 FGYGSGDNSFGLGAGGYG 374
FG G G++ +G GGYG
Sbjct: 214 FGRG-GNSGYGNQGGGYG 230
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 274 (101.5 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 57/158 (36%), Positives = 91/158 (57%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIG +S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ ++GR+VE K+AV R+D R +KIFVGG+ TE + Y
Sbjct: 75 RPQKVNGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKED-TEHHLRDY 123
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G + +M D + RGF F+T+D ++VDK+
Sbjct: 124 FEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKI 161
Score = 173 (66.0 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+G L+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKELS 172
A P++++
Sbjct: 74 ARPQKVN 80
Score = 158 (60.7 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYG--EVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIV 63
K+F+GGI DT E L++YF YG EV+E IM DR G+ RGF FV F D +V +IV
Sbjct: 106 KIFVGGIKEDT-EHHLRDYFEQYGKTEVIE--IMTDRGRGKKRGFAFVTFDDHDSVDKIV 162
Query: 64 IQEKHNIDGRMVEAK 78
IQ+ H ++G E +
Sbjct: 163 IQKYHTVNGHNCETR 177
Score = 77 (32.2 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAA-SNGGYDGVF 398
FGY G +G G GYG N G+ S S+ + +NGG G F
Sbjct: 198 FGYSGGSRGYGSGGQGYG-NQGSGYGGSGSYDSYNNGGGRGGF 239
Score = 63 (27.2 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG GSG N FG G G Y + G QSS+F GG G
Sbjct: 239 FGSGSGSN-FG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 275
Score = 46 (21.3 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 358 GYG-SGD-NSF--GLGAGGYGRNPGTTLAQSSSF 387
GYG SG +S+ G G GG+G G+ S+
Sbjct: 220 GYGGSGSYDSYNNGGGRGGFGSGSGSNFGGGGSY 253
Score = 44 (20.5 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 256 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG 300
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 299 (110.3 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 81/229 (35%), Positives = 117/229 (51%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+SWDT+++ LK+YF+ +GEV + I D NTGR+RGFGF++F D + V++
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 67 K-HNIDGRMVEAKKAVP-RDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKK 124
K H +DGR+++ KKA+ + D I +KIFVGGL E ++
Sbjct: 125 KEHRLDGRLIDPKKAMAMKKDPI------------------KKIFVGGLNPEAGEDQIRE 166
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------KRAVPK 169
YF+ FG I + + D T + RGF FIT+ E+ V K+ K A PK
Sbjct: 167 YFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKCEIKIAQPK 226
Query: 170 ELSP---GPTRSPLGGY--HYGLSRVNSFLNGYT---QGYTPSTVGGYG 210
E+ G GG G + ++ GY QGY GGYG
Sbjct: 227 EVYQQQYGGRGGSFGGRGGRGGKGQGQNWNQGYNYWNQGYGNQGYGGYG 275
Score = 50 (22.7 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSS 386
GYG+ D S G G YG PG +Q S+
Sbjct: 281 GYGNYDYS---GYGYYGYGPGYDYSQGSA 306
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 297 (109.6 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 61/158 (38%), Positives = 90/158 (56%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+ + T +E LK +F +G +V+ V+MKD T R+RGFGF+ ++ ++ + +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H IDGR+VE K+AVPR D N +K+FVG L E + Y
Sbjct: 92 RPHKIDGRVVEPKRAVPRQDIDSPNAGAT----------VKKLFVGALKDDHDEQSIRDY 141
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F FG I D+ ++ D T + RGF F+ +D + VDKV
Sbjct: 142 FQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKV 179
Score = 186 (70.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 34/82 (41%), Positives = 59/82 (71%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+G + D +E+ +++YF +G +V+ I+ D+ TG+ RGF FV F D V ++V+Q
Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182
Query: 66 EKHNIDGRMVEAKKAVPR-DDQ 86
++H ++G+MV+ KKA+P+ +DQ
Sbjct: 183 KQHQLNGKMVDVKKALPKQNDQ 204
Score = 164 (62.8 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 29/66 (43%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL T+ + K +F+++G I DVVVM D T+R RGFGFITY +D+ ++
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 166 AVPKEL 171
+ P ++
Sbjct: 91 SRPHKI 96
Score = 52 (23.4 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 362 GDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVF 398
G+NSFG G GG G G + ++ NG G F
Sbjct: 257 GNNSFGGGGGGGGGYGGGNNSWGNNNPWDNGNGGGNF 293
Score = 45 (20.9 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
GYG G+NS+G N G + +NGG D
Sbjct: 270 GYGGGNNSWGNNNPWDNGNGGGNFGGGGN-NWNNGGND 306
Score = 42 (19.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPG-TTLAQSSSFAASNGGYDG 396
+G +G ++ G +G N G ++SF GG G
Sbjct: 230 YGNQNGGGNWNNGGNNWGNNRGGNDNWGNNSFGGGGGGGGG 270
Score = 41 (19.5 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 358 GYGSGDNSFGLGAGGYG-RNPGTTLAQSSSFAASN-GGYD 395
G +G N +G G YG +N G + +N GG D
Sbjct: 215 GGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRGGND 254
Score = 39 (18.8 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 359 YGSGDNSFGLGA---GGYGRNPG 378
+G G N++ G GGY +N G
Sbjct: 293 FGGGGNNWNNGGNDFGGYQQNYG 315
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 293 (108.2 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 65/173 (37%), Positives = 96/173 (55%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI 62
+ K+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 63 VIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESD 121
V++ K H +DG++++ K+A +K+FVGGL+ +E
Sbjct: 108 VLELKEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPDTSEEQ 151
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPG 174
K+YF FG I ++ + D T RGF FITY EE V K+ + ++ G
Sbjct: 152 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 204
Score = 53 (23.7 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 358 GYGSGD-NSFGLGAGGYGRNPGTTLAQSSSFA-ASNGG 393
GYG D + G+ GYG+ Q S++ AS GG
Sbjct: 275 GYGGYDYTGYNYGSYGYGQGYTDYSGQQSTYGKASRGG 312
Score = 47 (21.6 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 178 SPLGGYHYGLSRVNSFLNGYTQGYT 202
S GGY Y S+ GY QGYT
Sbjct: 274 SGYGGYDYTGYNYGSY--GYGQGYT 296
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 293 (108.2 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 65/173 (37%), Positives = 96/173 (55%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI 62
+ K+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 63 VIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESD 121
V++ K H +DG++++ K+A +K+FVGGL+ +E
Sbjct: 108 VLELKEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPDTSEEQ 151
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPG 174
K+YF FG I ++ + D T RGF FITY EE V K+ + ++ G
Sbjct: 152 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 204
Score = 53 (23.7 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 358 GYGSGD-NSFGLGAGGYGRNPGTTLAQSSSFA-ASNGG 393
GYG D + G+ GYG+ Q S++ AS GG
Sbjct: 275 GYGGYDYTGYNYGSYGYGQGYTDYSGQQSTYGKASRGG 312
Score = 47 (21.6 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 178 SPLGGYHYGLSRVNSFLNGYTQGYT 202
S GGY Y S+ GY QGYT
Sbjct: 274 SGYGGYDYTGYNYGSY--GYGQGYT 296
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 253 (94.1 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 52/157 (33%), Positives = 87/157 (55%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLF+GG++ T +E L+ +F YG++ + V++ ++ R+R FGFV ++ A+ +
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DG V+ K+AV R+D + +KIFVGGL + + + Y
Sbjct: 67 RPHIVDGNNVDLKRAVARED----------AGKPEMLAKVKKIFVGGLKDDIEDEHLQDY 116
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
F QFG I V+ D +T + RGFGF+ +D ++ DK
Sbjct: 117 FSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADK 153
Score = 176 (67.0 bits), Expect = 4.9e-15, Sum P(3) = 4.9e-15
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE-IVIQ 65
K+F+GG+ D +E L++YFS +G + +A ++ D++TG+ RGFGFV F D A+ V+
Sbjct: 98 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVM 157
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H+I G VE KKA+ + +
Sbjct: 158 KFHSICGHKVEVKKALTKQE 177
Score = 138 (53.6 bits), Expect = 5.7e-10, Sum P(3) = 5.7e-10
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL T+ + +F+Q+G +TD VV+ + QR R FGF+TY S E D A
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 167 VP 168
P
Sbjct: 67 RP 68
Score = 54 (24.1 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 244 NPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
N FG N+ ++S YG G S G YG+ GY
Sbjct: 215 NNGFGNNSGYDSQNGYGGGYSDQMGGG---YGNGNGY 248
Score = 52 (23.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG---TTLAQSSSFAASNGGYDGVFAD 400
G G G G G GGY + G +S + + NG Y G ++D
Sbjct: 192 GMGRGSGFGGGGRGGYYNDYGYQNNGFGNNSGYDSQNG-YGGGYSD 236
Score = 49 (22.3 bits), Expect = 3.2e-29, Sum P(3) = 3.2e-29
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 195 NGYTQGYTPSTVGGYG 210
NGY GY+ GGYG
Sbjct: 228 NGYGGGYSDQMGGGYG 243
Score = 47 (21.6 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 360 GSGDNSFGLGAGGYG 374
G G S G G GGYG
Sbjct: 286 GGGGGSGGYGRGGYG 300
Score = 47 (21.6 bits), Expect = 3.2e-29, Sum P(3) = 3.2e-29
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 357 FGYGSGDNSFGLGAG----GYGRNPGTTLAQSSSFAASNGGY 394
+G G+G + FG G G GYG T SS S+G Y
Sbjct: 242 YGNGNGYSDFGEGYGQQASGYGAMK-TGYGNYSSGRQSSGPY 282
Score = 46 (21.3 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 357 FGYGSGDNSFGLGA--GGYGRNPGTTLAQSSSFAASNGG 393
FG G G + G GA GYG N + S + GG
Sbjct: 251 FGEGYGQQASGYGAMKTGYG-NYSSGRQSSGPYPRGGGG 288
Score = 45 (20.9 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 357 FGYGSG-DNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
FG SG D+ G G GGY G + ++ GY
Sbjct: 218 FGNNSGYDSQNGYG-GGYSDQMGGGYGNGNGYSDFGEGY 255
Score = 39 (18.8 bits), Expect = 6.6e-29, Sum P(3) = 6.6e-29
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 367 GLGAGGYGR 375
G G+GGYGR
Sbjct: 288 GGGSGGYGR 296
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 303 (111.7 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 59/163 (36%), Positives = 98/163 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
+ D GK+F+GG+SWDT ++ LK+YF+ +GEVV+ + D TGR+RGFGFV+F + +V
Sbjct: 50 EEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVE 109
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ KKA +KIFVGGL+ E
Sbjct: 110 KVITQKEHKLNGKVIDPKKA----------------KAMKTKEPVKKIFVGGLSPDTPEE 153
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YFD +G + + + ++ T + RGF FIT+ EE V K+
Sbjct: 154 KIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKI 196
Score = 150 (57.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF YGEV + + T + RGF F+ F + + ++++
Sbjct: 140 KIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEK 199
Query: 67 K-HNIDGRMVEAKKAVPRD 84
K HNI E K A+ ++
Sbjct: 200 KYHNIGLSKCEVKVAMSKE 218
Score = 40 (19.1 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 248 GANANFNSNLS--YGRGLSPY--YIGNPNRYGSPLGYD 281
G N N+N + +G Y Y N YG GYD
Sbjct: 241 GPNQNWNQGYGNYWNQGYGNYGNYGYNNQGYGGYGGYD 278
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 286 (105.7 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 57/158 (36%), Positives = 92/158 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H ++GR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 68 RPHKVNGRVVEPKRAVSREDS---QRPDAYLT-------VKKIFVGGIKEDTEEHHLRDY 117
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F Q+G + ++ D + + RGF F+T+D ++VDK+
Sbjct: 118 FGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKI 155
Score = 178 (67.7 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 32/69 (46%), Positives = 48/69 (69%)
Query: 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+ RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 5 QVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Query: 164 KRAVPKELS 172
A P +++
Sbjct: 65 MNARPHKVN 73
Score = 174 (66.3 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYG--EVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIV 63
K+F+GGI DT E L++YF YG EV+E I+ DR +G+ RGF FV F D +V +IV
Sbjct: 99 KIFVGGIKEDTEEHHLRDYFGQYGKTEVIE--IVTDRGSGKKRGFAFVTFDDRDSVDKIV 156
Query: 64 IQEKHNIDGRMVEAKKA 80
IQ+ H ++G E +KA
Sbjct: 157 IQKYHTVNGHNCEVRKA 173
Score = 56 (24.8 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
G+G DN FG G GR + S GY+G+ D
Sbjct: 193 GFGGNDN-FGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGIDND 234
Score = 50 (22.7 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG--YDG 396
SG +FG G GG+G N G + F S GG Y G
Sbjct: 181 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 223
Score = 38 (18.4 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 242 GLNPSFGANANFNSNLSYG--RGLSPY 266
G N +FG NF+ +G RG Y
Sbjct: 195 GGNDNFGRGGNFSGRGGFGGSRGGGGY 221
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 283 (104.7 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 54/158 (34%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S+ T EE L++Y+ +GE+ + V+++D + R+RG GFV F+ + +
Sbjct: 10 KLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAA 69
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR++E ++A+PR+ +K+FVGG+ E ++Y
Sbjct: 70 RPHSIDGRVLEPRRAIPRE----------ASGQRGAHWTLKKLFVGGIKEDTEEHHLREY 119
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + R RGFGF+T+D + VDK+
Sbjct: 120 FEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKI 157
Score = 187 (70.9 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L+EYF YG++ I+ DR +GR RGFGFV F D V +IV+Q
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQ 160
Query: 66 EKHNIDGRMVEAKKAV 81
+ H I+G E +KA+
Sbjct: 161 KYHAINGHHAEVRKAL 176
Score = 154 (59.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE +KY+ Q+G +TD VV+ D +QR RG GF+T+ S VD
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 166 AVPKEL 171
A P +
Sbjct: 69 ARPHSI 74
Score = 58 (25.5 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGV 397
GYG N + GGYG N G Q S++ G GV
Sbjct: 263 GYG---NQWEFSGGGYGNNFGNYDQQPSNYGPMRNGNFGV 299
Score = 51 (23.0 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAA----SNGGYDGVFAD 400
+G G G +FG G GYG G + + S GGY F +
Sbjct: 235 YGGGPGGGNFG-GYPGYGGGGGEYAGRGPGYGNQWEFSGGGYGNNFGN 281
Score = 46 (21.3 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASNGGYDG 396
GYG+G S GYG PG + G Y G
Sbjct: 221 GYGNGPRSRD-SCQGYGGGPGGGNFGGYPGYGGGGGEYAG 259
Score = 40 (19.1 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 359 YGSGDNSFGLGAGGYGRNPG 378
YG G + G+GGYG G
Sbjct: 312 YGPGGSG---GSGGYGGRSG 328
Score = 38 (18.4 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 371 GGYGRNPGT 379
G +GR PGT
Sbjct: 205 GNFGRGPGT 213
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 69/163 (42%), Positives = 98/163 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D A E
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V+ +K H +DGR+++ KKA+ V +KIFVGGL TE
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEE 168
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF +FG I + + D + RGF FIT+ EE V KV
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Score = 139 (54.0 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG++ + EE+++EYF +GE+ + D + RGF F+ F + + V+++
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 67 K-HNIDGRMVEAKKAVPRD 84
K H + G E K A P++
Sbjct: 215 KFHTVSGSKCEIKVAQPKE 233
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 303 (111.7 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 93
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 94 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 143
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 144 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 181
Score = 184 (69.8 bits), Expect = 6.8e-16, Sum P(2) = 6.8e-16
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 125 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 184
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 185 KYHTVNGHNCEVRKALSKQE 204
Score = 176 (67.0 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 92
Query: 166 AVPKEL 171
A P ++
Sbjct: 93 ARPHKV 98
Score = 37 (18.1 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 361 SGDNSFGLG-AGGYG 374
SG +FG G GG+G
Sbjct: 216 SGSGNFGGGRGGGFG 230
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 298 (110.0 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 61/163 (37%), Positives = 97/163 (59%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
+ D GK+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V
Sbjct: 41 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 100
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A +KIFVGGL+ E
Sbjct: 101 KVMDQKEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEE 144
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 145 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 187
Score = 151 (58.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 43/150 (28%), Positives = 71/150 (47%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 131 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 190
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K HN+ E K A+ ++ Q + R R GG S + Y
Sbjct: 191 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFAGRARGR----GGGPSQNWNQGYSNY 245
Query: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
++Q +G Y +N+Q G+G Y
Sbjct: 246 WNQGYGN-------YGYNSQGYGGYGGYDY 268
Score = 42 (19.8 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 179 PLGGYHYGLSRVNSFLNGY-TQGYTPSTVGGYG 210
P ++ G S N + GY GY GGYG
Sbjct: 234 PSQNWNQGYS--NYWNQGYGNYGYNSQGYGGYG 264
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 283 (104.7 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 59/158 (37%), Positives = 93/158 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG++++T +E L+ +F +G + E V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE ++AV R+D L T KIFVGG+ E + Y
Sbjct: 75 RPHKVDGRVVEPERAVSREDSHSL---------------TVKIFVGGIKEDTEEHYLRDY 119
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 120 SEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKI 157
Score = 171 (65.3 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL T+ + +F+Q+GT+T+ VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 149 (57.5 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++Y YG++ IM DR +G+ RGF FV F D +V +IVI+
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIR 160
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++ +KA+ + +
Sbjct: 161 KYHTVNDHNC-VRKALSKQE 179
Score = 56 (24.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG GSG N FG G G Y QSS+F GG G
Sbjct: 215 FGGGSGSN-FG-GGGSYNDFSNYN-NQSSNFGLMKGGNFG 251
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 295 (108.9 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 60/163 (36%), Positives = 97/163 (59%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
+ D GK+FIGG+SWDT ++ LK+YFS +G+VV+ + D TGR+RGFGFV+F + +V
Sbjct: 72 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 131
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A +KIFVGGL+ E
Sbjct: 132 KVMDQKEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEE 175
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 176 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 218
Score = 152 (58.6 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 43/150 (28%), Positives = 72/150 (48%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 162 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 221
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K HN+ E K A+ ++ Q + R R GG S + Y
Sbjct: 222 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFAGRARGR----GGGPSQNWNQGYSNY 276
Query: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
++Q +G+ Y +N+Q G+G Y
Sbjct: 277 WNQGYGS-------YGYNSQGYGGYGGYDY 299
Score = 43 (20.2 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 179 PLGGYHYGLSRVNSFLNGY-TQGYTPSTVGGYG 210
P ++ G S N + GY + GY GGYG
Sbjct: 265 PSQNWNQGYS--NYWNQGYGSYGYNSQGYGGYG 295
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 284 (105.0 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 56/158 (35%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T E+ L+ +F +G++ + V+M+D R+RGFGFV ++ + + +
Sbjct: 14 KLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMTA 73
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D N+ +KIFVGG+ E ++Y
Sbjct: 74 RPHKVDGRVVEPKRAVSREDS---NKPGAHLT-------VKKIFVGGIKEDTEEYHIREY 123
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+ +G I + +M + +T + RGF F+T+D + VDK+
Sbjct: 124 FECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKI 161
Score = 180 (68.4 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E ++EYF YG++ IM++R+TG+ RGF FV F D V +IV Q
Sbjct: 105 KIFVGGIKEDTEEYHIREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQ 164
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+ E +KA+P+ +
Sbjct: 165 KYHTINSHNCEVRKALPKQE 184
Score = 158 (60.7 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + +F+Q+G +TD VVM D +R RGFGF+TY S VD
Sbjct: 13 RKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMT 72
Query: 166 AVPKEL 171
A P ++
Sbjct: 73 ARPHKV 78
Score = 54 (24.1 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GY ++G G GGYG G +S GG G + D
Sbjct: 222 GYNGFGGNYGGGPGGYGGGRGGYGNFGGGGGSSGGGGGGNYND 264
Score = 49 (22.3 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
+G G S G G GG + G Q S+F G G
Sbjct: 247 FGGGGGSSGGGGGGNYNDFGNYGGQQSNFGPMKGNNFG 284
Score = 48 (22.0 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 358 GYGSGDNSFGLGAGGYG 374
GYGSG G G GGYG
Sbjct: 295 GYGSGG---GGGGGGYG 308
Score = 42 (19.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 362 GDNSFGLGAGGYGRNPG 378
G NS G GGYG G
Sbjct: 285 GRNSGPYGGGGYGSGGG 301
Score = 38 (18.4 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 359 YGSGDNSFGLGAGGYGRNPGT 379
YG G +G G GG G G+
Sbjct: 291 YGGG--GYGSGGGGGGGGYGS 309
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 255 (94.8 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 67/217 (30%), Positives = 106/217 (48%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLF+GG++ T + L+ YF +G + + V++++ R+R FGFV ++ A+ +
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DG+ VE K+AV R+D + +KIFVGGL + E D ++
Sbjct: 69 RPHVVDGKNVEVKRAVARED----------AGRPEALAKVKKIFVGGLKDDIEEKDLTEF 118
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV-----------KRAVPKELSPG 174
F QFG I V+ D +T + RGFGF+ ++ ++ DK K V K L+
Sbjct: 119 FSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTKQ 178
Query: 175 PTRSPLGGYHYGLSRVNSFLNGYTQ-GYTPSTVGGYG 210
++ GG G R G Q G+ GGYG
Sbjct: 179 EIQAA-GGARGGRGRGGGRGMGRNQNGFGGGRGGGYG 214
Score = 65 (27.9 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 358 GYGSGDNSFG--LGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG D +G G+GGYG G + GGY G
Sbjct: 223 GYGGNDGGYGGSYGSGGYGGGYGG--GYGGGYGEQMGGYGG 261
Score = 62 (26.9 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 358 GYGSGDNSFGLG-AGGYGRNPGTTLAQSSSFAASNGGYDGVF 398
G G N FG G GGYG G + ++GGY G +
Sbjct: 197 GMGRNQNGFGGGRGGGYGGYGG---GYGGGYGGNDGGYGGSY 235
Score = 57 (25.1 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 16/40 (40%), Positives = 17/40 (42%)
Query: 358 GYGSGDNSFGLG-AGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G G +G G GGYG N G S GGY G
Sbjct: 208 GRGGGYGGYGGGYGGGYGGNDGG-YGGSYGSGGYGGGYGG 246
Score = 46 (21.3 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 196 GYTQGYTPSTVGGYGLRMDG 215
GY GY GGYG +M G
Sbjct: 239 GYGGGYGGGYGGGYGEQMGG 258
Score = 46 (21.3 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGG--YDG 396
GYG G++ G+G YG+ QSS + GG Y G
Sbjct: 258 GYGGGNDYSDFGSG-YGQ-------QSSGYGPMKGGNTYGG 290
Score = 40 (19.1 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 259 YGRGLSPYYIGNPNRYGSPLG 279
YG G Y GN YG G
Sbjct: 216 YGGGYGGGYGGNDGGYGGSYG 236
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 68/163 (41%), Positives = 98/163 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D + E
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V+ +K H +DGR+++ KKA+ V +KIFVGGL TE
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEE 173
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF QFG I + + D + RGF FIT+ E+ V KV
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMK-DRNTGRARGFGFVVFADPAVAEIVIQ 65
K+F+GG++ + EE+++EYF +GE+ EA+ + D + RGF F+ F + + V++
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 66 EK-HNIDGRMVEAKKAVPRD 84
+K H + G E K A P++
Sbjct: 219 KKFHTVSGSKCEIKVAQPKE 238
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 68/163 (41%), Positives = 98/163 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D + E
Sbjct: 84 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 143
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V+ +K H +DGR+++ KKA+ V +KIFVGGL TE
Sbjct: 144 KVLDQKEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEE 186
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF QFG I + + D + RGF FIT+ E+ V KV
Sbjct: 187 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 229
Score = 137 (53.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMK-DRNTGRARGFGFVVFADPAVAEIVIQ 65
K+F+GG++ + EE+++EYF +GE+ EA+ + D + RGF F+ F + + V++
Sbjct: 173 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 66 EK-HNIDGRMVEAKKAVPRD 84
+K H + G E K A P++
Sbjct: 232 KKFHTVSGSKCEIKVAQPKE 251
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 68/163 (41%), Positives = 98/163 (60%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D + E
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V+ +K H +DGR+++ KKA+ V +KIFVGGL TE
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPEATEE 173
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF QFG I + + D + RGF FIT+ E+ V KV
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMK-DRNTGRARGFGFVVFADPAVAEIVIQ 65
K+F+GG++ + EE+++EYF +GE+ EA+ + D + RGF F+ F + + V++
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 66 EK-HNIDGRMVEAKKAVPRD 84
+K H + G E K A P++
Sbjct: 219 KKFHTVSGSKCEIKVAQPKE 238
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 280 (103.6 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D L+ +KIFVGG+ TE + Y
Sbjct: 74 RPHKVDGRVVEPKRAVSREDSQTLDAHLT----------VKKIFVGGIKEN-TEDHLRDY 122
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+ +G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 123 FE-YGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKI 159
Score = 156 (60.0 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GGI +T E+ L++YF YG++ IM DR +G+ RGF FV F D + +IQ+
Sbjct: 105 KIFVGGIKENT-EDHLRDYFE-YGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQK 162
Query: 67 KHNIDGRMVEAKKAVPRDD 85
H ++G E +KA+ + +
Sbjct: 163 YHTVNGHNCEVRKALSKQE 181
Score = 151 (58.2 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
+K+F+GGL+ T+ + +F+ +GT+T VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 QKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 166 AVPKEL 171
A P ++
Sbjct: 73 ARPHKV 78
Score = 55 (24.4 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 358 GY-GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GY G G++ G G Y + GT QSS+F GG G
Sbjct: 225 GYSGFGNDGSNFGGGSYN-DFGTYNNQSSNFGPIKGGNFG 263
Score = 46 (21.3 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 361 SGDNSFGLGAGGYGRNPGTTLAQSSSFAASNG-GYDG 396
SG +FG G GG G + ++ +G GY G
Sbjct: 192 SGSGNFGGGCGGNSGRGGFSGSRGGGGNGGSGDGYSG 228
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 277 (102.6 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 58/158 (36%), Positives = 91/158 (57%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M D NT R+RGFGFV + + +
Sbjct: 24 KLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAMNA 82
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ +DGR+VE K+AV R+D R +KIFVGG+ E + Y
Sbjct: 83 RPQKMDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDY 132
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 133 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 170
Score = 177 (67.4 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 114 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 173
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H +G E +KA+ + +
Sbjct: 174 KYHTGNGHNCEVRKALSKQE 193
Score = 167 (63.8 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 31/66 (46%), Positives = 46/66 (69%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 23 RKLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAMN 81
Query: 166 AVPKEL 171
A P+++
Sbjct: 82 ARPQKM 87
Score = 58 (25.5 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR +A S GY+G
Sbjct: 217 GFGGNDN-FGRGGNFSGRGGFAGSRGGGGYAGSGDGYNG 254
Score = 56 (24.8 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ ++FG G G Y + G QSS+F GG G
Sbjct: 254 GFGNDGSNFG-GGGSYN-DFGNYNNQSSNFGPMKGGNFG 290
Score = 53 (23.7 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG 393
SG +FG G GG+G N G + FA S GG
Sbjct: 205 SGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFAGSRGG 242
Score = 45 (20.9 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNG 392
FG G N G +G YG G SSS + +G
Sbjct: 281 FGPMKGGNFGGRSSGPYGDGEGGYGGSSSSSSYGSG 316
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 284 (105.0 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 57/157 (36%), Positives = 93/157 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ +F +G + V+M+D NT R+RG GF+++A + +
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNA 74
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
+ ++DGR+VE K+AV R+D R +KIFVGG+ E + YF
Sbjct: 75 RPHVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLRDYF 124
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+Q+G I + +M D + + +GF F+T+D ++VDK+
Sbjct: 125 EQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKI 160
Score = 172 (65.6 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ IM DR +G+ +GF FV F D +V +IVIQ
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQ 163
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 164 KYHPVNGHSCEVRKALSKQE 183
Score = 157 (60.3 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+GGL+ TE + +F+Q+GT TD VVM D NT+R RG GF+ Y + E VD A
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNA 74
Query: 167 VP 168
P
Sbjct: 75 RP 76
Score = 50 (22.7 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 361 SGDNSFGLG-AGGYGRNPGTTLAQSSSFAASNGGYDG 396
SG +FG G GG+G N + +F+ GG+ G
Sbjct: 195 SGSGNFGGGRGGGFGGNDNFGGGRRRNFSGG-GGFGG 230
Score = 47 (21.6 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 358 GYGSGDNSFG------LGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN G G GG+G + G + S GY+G
Sbjct: 207 GFGGNDNFGGGRRRNFSGGGGFGGSQG-----GGGYGGSGDGYNG 246
Score = 43 (20.2 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 359 YGSGDNSF--GLGAGGYGRN 376
YG G F L GGYGR+
Sbjct: 287 YGGGGQYFVKPLNQGGYGRS 306
Score = 42 (19.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 358 GYG-SGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGG 393
GYG SGD G G G G + ++ SN G
Sbjct: 236 GYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNSNFG 272
Score = 37 (18.1 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 357 FGYGSGDNSFGLGAGGYG 374
FG G+N G +G YG
Sbjct: 271 FGPMKGENFGGRSSGPYG 288
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 276 (102.2 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 60/157 (38%), Positives = 88/157 (56%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T E L+ +F +G + + V+M+D NT +RGFGFV +A V E+
Sbjct: 15 KLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYA--TVKEVDAAR 72
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
H +DGR+VE K+AV R+D R RKIFVGG+ E + YF
Sbjct: 73 SHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VRKIFVGGIKEDTEEHHLRDYF 122
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
Q+G I + +M D + + RGF +T+D + DK+
Sbjct: 123 KQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDK-DKI 158
Score = 166 (63.5 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GGI DT E L++YF YG++ IM DR +G+ RGF V F D +IVIQ+
Sbjct: 103 KIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDKDKIVIQK 162
Query: 67 KHNIDGRMVEAKKAVPRDD 85
+ ++G E +KA+ + +
Sbjct: 163 YYIVNGHNCEVRKALSKQE 181
Score = 147 (56.8 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVK 164
RK+F+GGL+ T + +F+Q+G + D VVM D NT+ RGFGF+TY + + VD +
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVDAAR 72
Score = 57 (25.1 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSS-FAASNGGYDG 396
G+G DN FG G G + G + +QS + S GY+G
Sbjct: 204 GFGGNDN-FGHG-GNFSGQGGFSGSQSGGGYGGSGDGYNG 241
Score = 54 (24.1 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 19/47 (40%), Positives = 21/47 (44%)
Query: 358 GYG-SGD--NSFGLGAGGYGRNP-----GTTLAQSSSFAASNGGYDG 396
GYG SGD N FG G +G G QSS+F GG G
Sbjct: 231 GYGGSGDGYNGFGNDGGNFGGGKIYNDFGNYNNQSSNFGPMKGGNFG 277
Score = 52 (23.4 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASN--GGYDG 396
SG +FG G GG+G N G + F+ S GGY G
Sbjct: 192 SGSGNFGGGRGGGFGGNDNFGHGGNFSGQGGFSGSQSGGGYGG 234
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 280 (103.6 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 60/158 (37%), Positives = 89/158 (56%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+ + T ++ LK +F +G +V+ V+MKD T R+RGFGF+ ++ + +
Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H IDGR VE K+AVPR + N +K+FVGGL E ++Y
Sbjct: 85 RPHKIDGRTVEPKRAVPRQEIDSPNAGAT----------VKKLFVGGLRDDHDEECLREY 134
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F FG I V ++ D +T + RGF FI +D + VDK+
Sbjct: 135 FKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKI 172
Score = 183 (69.5 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 33/80 (41%), Positives = 55/80 (68%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GG+ D +EE L+EYF +G++V I+ D++TG+ RGF F+ F D V +I++Q
Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H+I + ++ KKA+ + D
Sbjct: 176 KTHSIKNKTLDVKKAIAKQD 195
Score = 165 (63.1 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL T+ K +F+++G I DVVVM D T+R RGFGFITY +D +
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 166 AVPKELSPGPTRSP 179
A P ++ G T P
Sbjct: 84 ARPHKID-GRTVEP 96
Score = 52 (23.4 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 358 GYGSGDNSFGLG----AGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G+ +FG G +GG+ + G+ ++ NGG++G
Sbjct: 246 GFGNSGGNFGGGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNG 288
Score = 48 (22.0 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG 378
G G N++ G GG G N G
Sbjct: 359 GQGFAGNNYNTGGGGQGGNMG 379
Score = 41 (19.5 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGG 393
GYG G+++ G G G G + + S GG
Sbjct: 293 GYGGGNSNGSWGGNGGGGGGGGGFG--NEYQQSYGG 326
Score = 38 (18.4 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
G GD G G GG+G + A GG+
Sbjct: 215 GQGDR--GQGGGGWGGQNRQNGGGNWGGAGGGGGF 247
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 288 (106.4 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 60/163 (36%), Positives = 96/163 (58%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
Q + K+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A +KIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Score = 151 (58.2 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 43/150 (28%), Positives = 71/150 (47%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K HN+ E K A+ ++ Q + R R GG S + Y
Sbjct: 243 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFAGRARGR----GGGPSQNWNQGYSNY 297
Query: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
++Q +G Y +N+Q G+G Y
Sbjct: 298 WNQGYGN-------YGYNSQGYGGYGGYDY 320
Score = 42 (19.8 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 179 PLGGYHYGLSRVNSFLNGY-TQGYTPSTVGGYG 210
P ++ G S N + GY GY GGYG
Sbjct: 286 PSQNWNQGYS--NYWNQGYGNYGYNSQGYGGYG 316
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 288 (106.4 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 60/163 (36%), Positives = 96/163 (58%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
Q + K+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A +KIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Score = 151 (58.2 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 43/150 (28%), Positives = 71/150 (47%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K HN+ E K A+ ++ Q + R R GG S + Y
Sbjct: 243 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFAGRARGR----GGGPSQNWNQGYSNY 297
Query: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
++Q +G Y +N+Q G+G Y
Sbjct: 298 WNQGYGN-------YGYNSQGYGGYGGYDY 320
Score = 42 (19.8 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 179 PLGGYHYGLSRVNSFLNGY-TQGYTPSTVGGYG 210
P ++ G S N + GY GY GGYG
Sbjct: 286 PSQNWNQGYS--NYWNQGYGNYGYNSQGYGGYG 316
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 288 (106.4 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 60/163 (36%), Positives = 96/163 (58%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
Q + K+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V
Sbjct: 26 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 85
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A +KIFVGGL+ E
Sbjct: 86 KVMDQKEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEE 129
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 130 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 172
Score = 151 (58.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 43/150 (28%), Positives = 71/150 (47%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 116 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 175
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K HN+ E K A+ ++ Q + R R GG S + Y
Sbjct: 176 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFAGRARGR----GGGPSQNWNQGYSNY 230
Query: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
++Q +G Y +N+Q G+G Y
Sbjct: 231 WNQGYGN-------YGYNSQGYGGYGGYDY 253
Score = 42 (19.8 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 179 PLGGYHYGLSRVNSFLNGY-TQGYTPSTVGGYG 210
P ++ G S N + GY GY GGYG
Sbjct: 219 PSQNWNQGYS--NYWNQGYGNYGYNSQGYGGYG 249
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 288 (106.4 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 60/163 (36%), Positives = 96/163 (58%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
Q + K+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A +KIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Score = 151 (58.2 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 43/150 (28%), Positives = 71/150 (47%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K HN+ E K A+ ++ Q + R R GG S + Y
Sbjct: 243 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFAGRARGR----GGGPSQNWNQGYSNY 297
Query: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
++Q +G Y +N+Q G+G Y
Sbjct: 298 WNQGYGN-------YGYNSQGYGGYGGYDY 320
Score = 42 (19.8 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 179 PLGGYHYGLSRVNSFLNGY-TQGYTPSTVGGYG 210
P ++ G S N + GY GY GGYG
Sbjct: 286 PSQNWNQGYS--NYWNQGYGNYGYNSQGYGGYG 316
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 288 (106.4 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 60/163 (36%), Positives = 96/163 (58%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
Q + K+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A +KIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Score = 151 (58.2 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 43/150 (28%), Positives = 71/150 (47%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K HN+ E K A+ ++ Q + R R GG S + Y
Sbjct: 243 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFAGRARGR----GGGPSQNWNQGYSNY 297
Query: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
++Q +G Y +N+Q G+G Y
Sbjct: 298 WNQGYGN-------YGYNSQGYGGYGGYDY 320
Score = 42 (19.8 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 179 PLGGYHYGLSRVNSFLNGY-TQGYTPSTVGGYG 210
P ++ G S N + GY GY GGYG
Sbjct: 286 PSQNWNQGYS--NYWNQGYGNYGYNSQGYGGYG 316
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 286 (105.7 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 71/229 (31%), Positives = 113/229 (49%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFI G+S++T +E L+ +F +G + + V+M+D NT R RGFGFV + + +
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVG + E ++Y
Sbjct: 68 RPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGSIKEDTEEHHLREY 117
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVPKE 170
F+Q+G I + +M D + + RGF F+T+D ++VDK V++A+ K+
Sbjct: 118 FEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 177
Query: 171 LSPGPTRSPLGGYHYGLSRVNSF--LNGYTQGYTPSTVGGYGLRMDGRF 217
+ S G G N F N + + P G +G R G +
Sbjct: 178 EMASASSSQRG--RNGSGNYNDFGNYNNQSSNFGPMKGGNFGSRSSGSY 224
Score = 44 (20.5 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 245 PSFGANANFNSNLSYGRGLSPYYIGNPNRYG 275
P G N S+ SYG G Y NP G
Sbjct: 210 PMKGGNFGSRSSGSYGGG--GQYFANPRNQG 238
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 280 (103.6 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 55/158 (34%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+ +T EE L+ Y+ +G++ + V+++D ++ R+RGFGFV+F+ A + +
Sbjct: 22 KLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+V +K+ VPR++ T+K+FVGG+ TE + Y
Sbjct: 82 RPHSIDGRVVASKRVVPREES----------GKPGACVTTKKLFVGGIKEDTTERHLRDY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++GTI + ++ + R FGF+T+D + VDK+
Sbjct: 132 FERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKI 167
Score = 155 (59.6 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG + I+ R +GR FGFV F D V +IV+Q
Sbjct: 113 KLFVGGIKEDTTERHLRDYFERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQ 170
Query: 66 EKHNIDGRMVEAKKAVPR 83
+ H I+G + +KA+ R
Sbjct: 171 KYHTINGHHAQLEKALSR 188
Score = 151 (58.2 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL S E + Y+ Q+G +TD VV+ D ++QR RGFGF+ + S VD
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
Score = 50 (22.7 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 17/44 (38%), Positives = 18/44 (40%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQ----SSSFAASNGGYDG 396
+G G SFG G GYG G A SS F G Y G
Sbjct: 251 YGGGPAGGSFG-GCPGYGGGYGDRGAGYSNLSSGFGDGYGNYGG 293
Score = 47 (21.6 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 357 FGYGSGDNSFGLGAGGYGRNP 377
FG G G N G G+ GY R P
Sbjct: 223 FGAGPGRNFRG-GSEGYARGP 242
Score = 44 (20.5 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
G GD G G GG G N G +F + GY
Sbjct: 206 GFGDIPSGGGGGGGGGNFGA--GPGRNFRGGSEGY 238
Score = 39 (18.8 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 241 PGLNPSFGANANFNSNLS------YGR-GLSPYYIGNPNRYGS 276
PG +G SNLS YG G Y GN N +G+
Sbjct: 264 PGYGGGYGDRGAGYSNLSSGFGDGYGNYGGGDYGEGNYNAFGN 306
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 280 (103.6 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 55/158 (34%), Positives = 95/158 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+ +T EE L+ Y+ +G++ + V+++D ++ R+RGFGFV+F+ A + +
Sbjct: 22 KLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H+IDGR+V +K+ VPR++ T+K+FVGG+ TE + Y
Sbjct: 82 RPHSIDGRVVASKRVVPREES----------GKPGACVTTKKLFVGGIKEDTTERHLRDY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++GTI + ++ + R FGF+T+D + VDK+
Sbjct: 132 FERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKI 167
Score = 155 (59.6 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG + I+ R +GR FGFV F D V +IV+Q
Sbjct: 113 KLFVGGIKEDTTERHLRDYFERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQ 170
Query: 66 EKHNIDGRMVEAKKAVPR 83
+ H I+G + +KA+ R
Sbjct: 171 KYHTINGHHAQLEKALSR 188
Score = 151 (58.2 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL S E + Y+ Q+G +TD VV+ D ++QR RGFGF+ + S VD
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
Score = 50 (22.7 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 17/44 (38%), Positives = 18/44 (40%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQ----SSSFAASNGGYDG 396
+G G SFG G GYG G A SS F G Y G
Sbjct: 251 YGGGPAGGSFG-GCPGYGGGYGDRGAGYSNLSSGFGDGYGNYGG 293
Score = 47 (21.6 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 357 FGYGSGDNSFGLGAGGYGRNP 377
FG G G N G G+ GY R P
Sbjct: 223 FGAGPGRNFRG-GSEGYARGP 242
Score = 44 (20.5 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
G GD G G GG G N G +F + GY
Sbjct: 206 GFGDIPSGGGGGGGGGNFGA--GPGRNFRGGSEGY 238
Score = 39 (18.8 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 241 PGLNPSFGANANFNSNLS------YGR-GLSPYYIGNPNRYGS 276
PG +G SNLS YG G Y GN N +G+
Sbjct: 264 PGYGGGYGDRGAGYSNLSSGFGDGYGNYGGGDYGEGNYNAFGN 306
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 292 (107.8 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 78/231 (33%), Positives = 117/231 (50%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D+GK+FIGG+SWDT+++ L +Y S +GEV++ I D TGR+RGFGFV+F D +
Sbjct: 26 QEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVD 85
Query: 62 IVIQ-EKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
V++ +H +DG++++ K+A + + + +K+FVGGL+ +TE
Sbjct: 86 RVLELTEHKLDGKLIDPKRA-----KAIKGKEP-----------PKKVFVGGLSPDITEE 129
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKR 165
++YF +G I + + D T RGF F+T+ EE V K +K
Sbjct: 130 QLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLENRYHQIGSGKCEIKV 189
Query: 166 AVPKEL-SPGPTRSP-LGGYHYGL----SRVNSFLNGYTQGYTPSTVGGYG 210
A PKE+ R GG G R F GY Y + GGYG
Sbjct: 190 AQPKEVYRQQQNRDRGFGGGRGGFRGRGGRGQGFNQGYNNYYGQNYGGGYG 240
Score = 37 (18.1 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 358 GYGSGDNSFGLGAGGY 373
GYG+G N G GY
Sbjct: 238 GYGNGYNQGYNGYSGY 253
Score = 37 (18.1 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 357 FGYGSGDNSFGLGAGGYGR 375
+GYG G + + YG+
Sbjct: 263 YGYGQGYDDYSGQQSSYGK 281
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 278 (102.9 bits), Expect = 4.6e-28, Sum P(2) = 4.6e-28
Identities = 59/157 (37%), Positives = 91/157 (57%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG++ T EE LK ++ +G+VV+ V+M+D T R+RGFGF+ + + + +
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H IDG+ VEAK+A+PR ++ +K+FVGGL E ++Y
Sbjct: 93 RPHIIDGKTVEAKRALPRPER----------ESRETNISVKKLFVGGLKDNHDEECLREY 142
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
F QFG + V ++ D T + RGF F+ +D +AVDK
Sbjct: 143 FLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDK 179
Score = 159 (61.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGLA TE + K ++ Q+G + DVVVM D T+R RGFGFITY VD+ +
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 166 AVP 168
P
Sbjct: 92 NRP 94
Score = 154 (59.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GG+ + +EE L+EYF +G VV ++ D+ TG+ RGF FV F D AV + +++
Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183
Query: 66 EKHNIDGRMVEAKKAV 81
++H I V+ KK++
Sbjct: 184 KQHAIKYVHVDVKKSI 199
Score = 59 (25.8 bits), Expect = 4.6e-28, Sum P(2) = 4.6e-28
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSP 277
G ++G + ++N++ R ++PY G PN Y +P
Sbjct: 390 GYQQNYGGGPSKHNNMNANR-MNPYSAGPPNSYHTP 424
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 285 (105.4 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 59/163 (36%), Positives = 96/163 (58%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
Q + K+FIGG+SWDT ++ LK+YFS +G+VV+ + D TGR+RGFGFV+F + +V
Sbjct: 91 QREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A +KIFVGGL+ E
Sbjct: 151 KVMDQKEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEE 194
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 195 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 237
Score = 152 (58.6 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 43/150 (28%), Positives = 72/150 (48%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K HN+ E K A+ ++ Q + R R GG S + Y
Sbjct: 241 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFAGRARGR----GGGPSQNWNQGYSNY 295
Query: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
++Q +G+ Y +N+Q G+G Y
Sbjct: 296 WNQGYGS-------YGYNSQGYGGYGGYDY 318
Score = 43 (20.2 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 179 PLGGYHYGLSRVNSFLNGY-TQGYTPSTVGGYG 210
P ++ G S N + GY + GY GGYG
Sbjct: 284 PSQNWNQGYS--NYWNQGYGSYGYNSQGYGGYG 314
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 285 (105.4 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 59/163 (36%), Positives = 96/163 (58%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
Q + K+FIGG+SWDT ++ LK+YFS +G+VV+ + D TGR+RGFGFV+F + +V
Sbjct: 91 QREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A +KIFVGGL+ E
Sbjct: 151 KVMDQKEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEE 194
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 195 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 237
Score = 152 (58.6 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 43/150 (28%), Positives = 72/150 (48%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K HN+ E K A+ ++ Q + R R GG S + Y
Sbjct: 241 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFAGRARGR----GGGPSQNWNQGYSNY 295
Query: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
++Q +G+ Y +N+Q G+G Y
Sbjct: 296 WNQGYGS-------YGYNSQGYGGYGGYDY 318
Score = 43 (20.2 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 179 PLGGYHYGLSRVNSFLNGY-TQGYTPSTVGGYG 210
P ++ G S N + GY + GY GGYG
Sbjct: 284 PSQNWNQGYS--NYWNQGYGSYGYNSQGYGGYG 314
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 285 (105.4 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 59/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVIQ 65
K+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V +++ Q
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 66 EKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
++H ++G++++ K+A +KIFVGGL+ E ++Y
Sbjct: 61 KEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEEKIREY 104
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 105 FGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 142
Score = 152 (58.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 43/150 (28%), Positives = 71/150 (47%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 86 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 145
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K HN+ E K A+ ++ Q + R R GG S + Y
Sbjct: 146 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFVGRARGR----GGGPSQNWNQGYSNY 200
Query: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
++Q +G Y +N+Q G+G Y
Sbjct: 201 WNQGYGN-------YGYNSQGYGGYGGYDY 223
Score = 42 (19.8 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 179 PLGGYHYGLSRVNSFLNGY-TQGYTPSTVGGYG 210
P ++ G S N + GY GY GGYG
Sbjct: 189 PSQNWNQGYS--NYWNQGYGNYGYNSQGYGGYG 219
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 243 (90.6 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 54/160 (33%), Positives = 85/160 (53%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S + E L+ + +G + + V+ +D NT +RGFGF+ V E+ +
Sbjct: 15 KLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEEVDAAM 74
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D R +K FVGG+ E +
Sbjct: 75 NARPHKVDGRVVEPKRAVSREDS---QRPGAHLT-------VKKTFVGGIKEDTEEHHLR 124
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+Q+G I + +M D + + R F F+T+D ++VDK+
Sbjct: 125 DYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKI 163
Score = 166 (63.5 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K F+GGI DT E L++YF YG++ IM D +G+ R F FV F D +V +IVIQ
Sbjct: 108 KTFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIVIQ 166
Query: 66 EKHNIDGRMVEAKKAVPRDDQ 86
+ H ++G E KKA+ + +Q
Sbjct: 167 KYHTVNGHNCEVKKALSKQEQ 187
Score = 131 (51.2 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE--EAVDKV 163
RK+F+GGL+ +T + + +Q+G +TD VV D NT+ RGFGFIT + E VD
Sbjct: 14 RKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEEVDAA 73
Query: 164 KRAVPKEL 171
A P ++
Sbjct: 74 MNARPHKV 81
Score = 51 (23.0 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 358 GYGSGDNSFGLGAGGYGRNP-GTTLAQSSSFAASNGGYDG 396
G+G+ ++FG GG N G QSS+F + GG G
Sbjct: 245 GFGNDGSNFG---GGRSYNDFGNYNNQSSNFGPTKGGNFG 281
Score = 46 (21.3 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 358 GYGSGDNSFGLGA-----GGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GG+G + G S S G DG
Sbjct: 208 GFGGNDN-FGRGGNFSGGGGFGGSQGGGGYGGSGDVYSGFGNDG 250
Score = 41 (19.5 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGG 393
FG G N G +G YG G SS+ ++ GG
Sbjct: 272 FGPTKGGNFGGRSSGPYG---GGDYGGSSNSSSYGGG 305
Score = 40 (19.1 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 246 SFGANANFNSNLSYGRG 262
+FG F N ++GRG
Sbjct: 202 NFGHGGGFGGNDNFGRG 218
Score = 37 (18.1 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 242 GLNPSFGANANFNSNLSYG 260
G N +FG NF+ +G
Sbjct: 210 GGNDNFGRGGNFSGGGGFG 228
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 271 (100.5 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 51/158 (32%), Positives = 92/158 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+ T E+ L+ Y+ +G++ + V+++D + R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H++DG++V+ K+AV R++ +K+FVGG+ E + Y
Sbjct: 82 RPHSVDGKVVDPKRAVAREES----------EKPGAHLAVKKLFVGGIKEDTEEHHLRDY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 132 FEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 185 (70.2 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KA+ R +
Sbjct: 173 KYHTINGHHAEVGKALSRQE 192
Score = 153 (58.9 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+GGL S TE + Y+ Q+G +TD VV+ D + +R RGFGF+T+ S VD A
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 167 VP 168
P
Sbjct: 82 RP 83
Score = 53 (23.7 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 18/41 (43%), Positives = 18/41 (43%)
Query: 358 GYGSGDNSFGLGAG--GYGRNPGTTLAQSSSFAASNGGYDG 396
GYG G GLG G GYG PG S GGY G
Sbjct: 233 GYGRGP---GLGDGYYGYGGGPGGGNFGSCP-GYGGGGYGG 269
Score = 52 (23.4 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPG 378
FG G G G G GYGR PG
Sbjct: 219 FGAGPGRKYKG-GYNGYGRGPG 239
Score = 52 (23.4 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 357 FGYGSGDNSFG----LGAGGYGRN-PGTTLAQSSSFAASNGGYD---GVFAD 400
+G G G +FG G GGYG PG + S ++ GG + G++ D
Sbjct: 247 YGGGPGGGNFGSCPGYGGGGYGGGGPGYGNQKRGSGGSNYGGGNCGSGIYND 298
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 264 (98.0 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 55/158 (34%), Positives = 89/158 (56%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLFIGG+S++T + L+E+F +G + + V+M+D +RGF FV ++ V ++
Sbjct: 38 KLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMCA 97
Query: 66 EKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
H + G +VE K+AV R+D I+ KIFVGG+ E + + Y
Sbjct: 98 RPHKVVGCVVEPKRAVSREDSIIPG----------AHLMVEKIFVGGIKEDTEEYNLRDY 147
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + VM D + + RGF F+T+D+ + VDKV
Sbjct: 148 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKV 185
Score = 166 (63.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F + + V+Q+
Sbjct: 129 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQK 188
Query: 67 KHNIDGRMVEAKK 79
H ++G E K+
Sbjct: 189 YHTVNGHNCEVKE 201
Score = 141 (54.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D + RGF F+TY E V V
Sbjct: 37 RKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMC 96
Query: 166 AVPKEL 171
A P ++
Sbjct: 97 ARPHKV 102
Score = 60 (26.2 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
G G N FG G GGYG G S+ +GG++G D
Sbjct: 222 GRGGN-FG-GRGGYGGGGG---GSRGSYGGGDGGFNGFGGD 257
Score = 48 (22.0 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 358 GYGSGDN----SFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG G S+G G GG+ G S GGY G
Sbjct: 232 GYGGGGGGSRGSYGGGDGGFNGFGGDA-GHGGRRGYSRGGYGG 273
Score = 43 (20.2 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG 378
GYG+ D G G GG G PG
Sbjct: 277 GYGNQDG--GSGGGG-GGEPG 294
Score = 42 (19.8 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG 378
GYG G +G GG G G
Sbjct: 270 GYGGGGPGYGNQDGGSGGGGG 290
Score = 40 (19.1 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG 378
GY G +G G GYG G
Sbjct: 265 GYSRG--GYGGGGPGYGNQDG 283
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 280 (103.6 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 58/157 (36%), Positives = 93/157 (59%)
Query: 8 LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVIQE 66
+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V +++ Q+
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
+H ++G++++ K+A +KIFVGGL+ E ++YF
Sbjct: 61 EHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEEKIREYF 104
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 105 GAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 141
Score = 152 (58.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 43/150 (28%), Positives = 71/150 (47%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 85 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
K HN+ E K A+ ++ Q + R R GG S + Y
Sbjct: 145 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFVGRARGR----GGGPSQNWNQGYSNY 199
Query: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
++Q +G Y +N+Q G+G Y
Sbjct: 200 WNQGYGN-------YGYNSQGYGGYGGYDY 222
Score = 42 (19.8 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 179 PLGGYHYGLSRVNSFLNGY-TQGYTPSTVGGYG 210
P ++ G S N + GY GY GGYG
Sbjct: 188 PSQNWNQGYS--NYWNQGYGNYGYNSQGYGGYG 218
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 264 (98.0 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 55/158 (34%), Positives = 91/158 (57%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIG +S +T EE L Y+ +G + + V+++D + ++R FGF+ F+ A + +
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H IDG+MV K+AVPR+D L +K+FVGG+ + E + Y
Sbjct: 82 RPHFIDGKMVMPKRAVPREDHGKLGALIT----------VKKLFVGGITEDMKEHHLRDY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+++G I + ++ D + + RGFGFIT+D + VDK+
Sbjct: 132 FEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKI 169
Score = 180 (68.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI+ D E L++YF YG++ I+ D +G+ RGFGF+ F D V +IV+Q
Sbjct: 113 KLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDDQ 86
+ H I+G E +KA+ R ++
Sbjct: 173 KNHTINGHRAEVRKALSRQER 193
Score = 124 (48.7 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+G L+S TE Y+ Q+G +TD V++ D +Q+ R FGFIT+ S +D A
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 167 VP 168
P
Sbjct: 82 RP 83
Score = 57 (25.1 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 358 GYGSGDNSFGLGAGGYG-RNPGTTLAQSSSFAASNGGYDG 396
GYG G FG G+ GYG R G + + GG G
Sbjct: 233 GYGRG-RQFGDGSHGYGGRAGGGSWGVRPGYGGGRGGCSG 271
Score = 51 (23.0 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 358 GYGSGDNSFGLGAGGYGR 375
G G G N G GAGGYGR
Sbjct: 220 GAGRGRNFRG-GAGGYGR 236
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 270 (100.1 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 58/160 (36%), Positives = 90/160 (56%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG S++T +E L+ +F G + + V+M+D NT R+RGFGFV + AV E+ +
Sbjct: 15 KLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYT--AVEEVDPAM 72
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+ ++D R +KIF GG+ E +
Sbjct: 73 HARPHKVDGRVVEPKRTSSKEDS---QRPGAHLT-------VKKIFAGGIKEDTEEHHLR 122
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 178 (67.7 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F GGI DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 166 KYHTVNGHNWEVRKALSKQE 185
Score = 154 (59.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
+K+F+GG + T+ + +F Q G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 QKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMH 73
Query: 166 AVPKEL 171
A P ++
Sbjct: 74 ARPHKV 79
Score = 47 (21.6 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + GY+G
Sbjct: 209 GFGGNDN-FGHGGNFRGRGGFGGSGGGGGYGGRGDGYNG 246
Score = 42 (19.8 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 18/71 (25%), Positives = 20/71 (28%)
Query: 207 GGYGLRMDGR--FSPVAXXXXXXXXXXXXXXXXXIEPGLNPSFGANANFNSNLSYGRGLS 264
GGYG R DG F + P G N S+ YG G
Sbjct: 235 GGYGGRGDGYNGFDNDGSNFGGGRRHNDFGNYNNQSSNVGPMKGRNFGGRSSGPYGGGGK 294
Query: 265 PYYIGNPNRYG 275
Y P G
Sbjct: 295 GQYFAKPRNQG 305
Score = 40 (19.1 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 247 FGANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWGN 301
FG N NF ++ GRG G G GY+ ++F N +GN
Sbjct: 210 FGGNDNFGHGGNFRGRGGFGGSGGGGGYGGRGDGYNGFDNDGSNFGGGRRHNDFGN 265
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 264 (98.0 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
Identities = 75/229 (32%), Positives = 113/229 (49%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG++ T+E L+ +F +G + + V++ + T R+R FGFV +++ A+ +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
H +DG VE K+AV R+D + +K+FVGGL V E D ++
Sbjct: 68 SPHAVDGNTVELKRAVSREDS----------ARPGAHAKVKKLFVGGLKGDVAEGDLIEH 117
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVPKE 170
F QFGT+ ++ D + + RGFGF+ + + +A DK VK+AVPKE
Sbjct: 118 FSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
Query: 171 --LSPG------PTRSPLGGYHYGLSR-VNSFLNGYTQGYTPSTVGGYG 210
S G +R GG G R N G GY ++ GGYG
Sbjct: 178 DIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGY--NSYGGYG 224
Score = 52 (23.4 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 357 FG-YGSGDNSFG-LGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG Y +S+G + +GG G G++ S+ GGY G
Sbjct: 255 FGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGG 296
Score = 46 (21.3 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 358 GYGSGDNSFGL--GAGGYGRNPGTTLAQSSSFAASNGG 393
G G G NS+G G GG G N SS+ S+ G
Sbjct: 212 GGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYG 249
Score = 46 (21.3 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 358 GYGSGDNSFGLGAGG--YGRNP-GTTLAQSSSFAASNGGY 394
G G G N++G G GG YG + G S++ Y
Sbjct: 226 GGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSY 265
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 263 (97.6 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 74/229 (32%), Positives = 113/229 (49%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG++ T+E L+ +F +G + + V++ + T R+R FGFV +++ A+ +
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
H +DG VE K+AV R+D + +K+FVGGL V E D ++
Sbjct: 73 SPHAVDGNTVELKRAVSREDS----------ARPGAHAKVKKLFVGGLKGDVAEGDLIEH 122
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVPKE 170
F QFGT+ ++ D + + RGFGF+ + + +A DK VK+AVPKE
Sbjct: 123 FSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 182
Query: 171 -LSPG-------PTRSPLGGYHYGLSR-VNSFLNGYTQGYTPSTVGGYG 210
+ G +R GG G R N G GY ++ GGYG
Sbjct: 183 DIHSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGY--NSYGGYG 229
Score = 52 (23.4 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 357 FG-YGSGDNSFG-LGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG Y +S+G + +GG G G++ S+ GGY G
Sbjct: 260 FGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGG 301
Score = 51 (23.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 358 GYGSGDNSFG-LGAGGYGRNP-GTTLAQSSSFAASNGG 393
G G G NS+G G GG G N G SS+ S+ G
Sbjct: 217 GGGGGYNSYGGYGGGGGGYNAYGGGGGGGSSYGGSDYG 254
Score = 44 (20.5 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 358 GYGSGDNSFGLGAGG---YGRNP-GTTLAQSSSFAASNGGY 394
G G G N++G G GG YG + G S++ Y
Sbjct: 230 GGGGGYNAYGGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSY 270
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 224 (83.9 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 53/158 (33%), Positives = 84/158 (53%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S+ T +E L+ +F +G + + V M+D N +RGFGFV + + +
Sbjct: 15 KLFIGGLSFKTTDESLRSHFEQWGTLTDCV-MRDPNNKISRGFGFVTYTTVEELDAAMNA 73
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DG +VE K+AV R+D +KIFVG V E +
Sbjct: 74 RPHKVDGGVVEPKRAVSREDS----------PRPGAHLTVKKIFVG-----VKEDTEGHH 118
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VD +
Sbjct: 119 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTI 156
Score = 151 (58.2 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 36/104 (34%), Positives = 57/104 (54%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+GGL+ T+ + +F+Q+GT+TD V M D N + RGFGF+TY + E +D A
Sbjct: 15 KLFIGGLSFKTTDESLRSHFEQWGTLTDCV-MRDPNNKISRGFGFVTYTTVEELDAAMNA 73
Query: 167 VPKELSPG---PTR------SPLGGYHYGLSRVNSFLNGYTQGY 201
P ++ G P R SP G H + ++ + T+G+
Sbjct: 74 RPHKVDGGVVEPKRAVSREDSPRPGAHLTVKKIFVGVKEDTEGH 117
Score = 137 (53.3 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVIQ 65
K+F+G + DT +F YG++ IM DR +G+ RGF FV F DP +V IVIQ
Sbjct: 105 KIFVG-VKEDTEGH----HFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIVIQ 159
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ +
Sbjct: 160 KYHTVNGHNCEVRKALSNQE 179
Score = 56 (24.8 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 249 ANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
+N S S RG SP Y G YGS GY
Sbjct: 176 SNQELASASSSQRGCSPGYSGGSRGYGSGQGY 207
Score = 56 (24.8 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG GSG N FG G G Y + G Q S+F GG G
Sbjct: 232 FGGGSGSN-FG-GGGSYN-DFGNYNNQLSNFGQMKGGNFG 268
Score = 51 (23.0 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYGSG +G GYG G S + GG+ G
Sbjct: 200 GYGSGQG-YGTQGSGYG---GRGSYDSYNDGGGRGGFGG 234
Score = 49 (22.3 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASN-GGYDGVF 398
GY G +G G G YG G+ S+ + N GG G F
Sbjct: 193 GYSGGSRGYGSGQG-YGTQ-GSGYGGRGSYDSYNDGGGRGGF 232
Score = 44 (20.5 bits), Expect = 2.6e-25, Sum P(3) = 2.6e-25
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 358 GYGSGDNSFGLGAGGYGR-NPGTTLAQSSSFAASNGGYDGVFAD 400
GYG+ + +G G G Y N G + SN G G + D
Sbjct: 206 GYGTQGSGYG-GRGSYDSYNDGGGRGGFGGGSGSNFGGGGSYND 248
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 262 (97.3 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 75/230 (32%), Positives = 114/230 (49%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG++ T E L+E+F+ YG + + V++ + T R+R FGFV ++ A+ +
Sbjct: 29 KLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEADAAMAA 88
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
H +DG VE K+AV R+D + +K+FVGGL V E D ++
Sbjct: 89 SPHAVDGNSVELKRAVSREDS----------AKPGAHAKVKKLFVGGLKGDVGEGDLVQH 138
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVPKE 170
F QFG + ++ D + + RGFGF+ + + +A DK VK+AVPKE
Sbjct: 139 FSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 198
Query: 171 -LSPG------PTRSPLGGYHY--GLSRVNSFLNGYTQGYTP-STVGGYG 210
+ G P+R GG G N NG ++G ++ GGYG
Sbjct: 199 DIQAGGGGSARPSRGGRGGGRGRGGGGSGNRDHNGLSKGGGGYNSYGGYG 248
Score = 51 (23.0 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
+G G G +G G GG+G + QSS +GG G
Sbjct: 263 YGGGGGGGDYGNGYGGFG---SYSQHQSSYGPMKSGGGGG 299
Score = 50 (22.7 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT--TLAQ-SSSFAASNGGYDG 396
GYG G G G G YG G + +Q SS+ G G
Sbjct: 257 GYGGGSYGGGGGGGDYGNGYGGFGSYSQHQSSYGPMKSGGGG 298
Score = 48 (22.0 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GY S G G GGYG G + GY G
Sbjct: 240 GYNSYGGYGGGGGGGYGGYGGGSYGGGGGGGDYGNGYGG 278
Score = 48 (22.0 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 357 FG-YGSGDNSFG-LGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG Y +S+G + +GG G G S+ GGY G
Sbjct: 279 FGSYSQHQSSYGPMKSGGGGGGGGGNWGGRSNSGPYRGGYGG 320
Score = 44 (20.5 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPG 378
+G G G G G G YG G
Sbjct: 247 YGGGGGGGYGGYGGGSYGGGGG 268
Score = 39 (18.8 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 361 SGDNSFGLGAGGYG 374
SG G G GGYG
Sbjct: 311 SGPYRGGYGGGGYG 324
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 263 (97.6 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 74/229 (32%), Positives = 113/229 (49%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG++ T+E L+ +F +G + + V++ + T R+R FGFV +++ A+ +
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
H +DG VE K+AV R+D + +K+FVGGL V E D ++
Sbjct: 73 SPHAVDGNTVELKRAVSREDS----------ARPGAHAKVKKLFVGGLKGDVAEGDLIEH 122
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVPKE 170
F QFGT+ ++ D + + RGFGF+ + + +A DK VK+AVPKE
Sbjct: 123 FSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 182
Query: 171 -LSPG-------PTRSPLGGYHYGLSR-VNSFLNGYTQGYTPSTVGGYG 210
+ G +R GG G R N G GY ++ GGYG
Sbjct: 183 DIHSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGY--NSYGGYG 229
Score = 49 (22.3 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 357 FGYGSGDNSFGLGAGG--YGRNP-GTTLAQSSSFAASNGGY 394
+G G G N++G G GG YG + G S++ Y
Sbjct: 228 YGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSY 268
Score = 49 (22.3 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 358 GYGSGDNSFG-LGAGG----YGRNPGTTLAQSSSFAASNGGY 394
G G G NS+G G GG YG G + S + GG+
Sbjct: 217 GGGGGYNSYGGYGGGGGYNAYGGGGGGSSYGGSDYGNGFGGF 258
Score = 47 (21.6 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 357 FG-YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG Y +S+G G G G++ S+ GGY G
Sbjct: 258 FGSYSQHQSSYGPMKSGGGGGGGSSWGGRSNSGPYRGGYGG 298
Score = 39 (18.8 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 358 GYGSGDNSFGLGAGGYG 374
GYG G G GYG
Sbjct: 295 GYGGGGGYGGRCGSGYG 311
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 265 (98.3 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 55/159 (34%), Positives = 90/159 (56%)
Query: 8 LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---VI 64
L IGG+S++T ++ L+E+ +G + + V+M D T +RGFGFV ++ V E+ +
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYS--CVEEVDAAMC 58
Query: 65 QEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKK 124
H +DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 59 AWPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLRD 108
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 109 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 147
Score = 181 (68.8 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV Q
Sbjct: 91 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQ 150
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
E H I+ E KKAV + +
Sbjct: 151 EHHAINRHNCEVKKAVSKQE 170
Score = 136 (52.9 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAV 167
+ +GGL+ T+ +++ +++GT+TD VVM D T+ RGFGF+TY E VD A
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 168 PKEL 171
P ++
Sbjct: 61 PHKV 64
Score = 46 (21.3 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 358 GYGSGDNSFGLGAGG-YGRN-PG 378
G+G G +F +G GG +GR PG
Sbjct: 179 GHGGGSGNF-MGRGGNFGRGGPG 200
Score = 44 (20.5 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 360 GSGDNSFGLGAGGYGRNPG 378
G G N FG G GYG G
Sbjct: 189 GRGGN-FGRGGPGYGNQGG 206
Score = 40 (19.1 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 359 YGSGDNSFGLGAGGYG 374
+G G +G GGYG
Sbjct: 194 FGRGGPGYGNQGGGYG 209
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 56/155 (36%), Positives = 99/155 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KL + GI WD + + LK+Y S +G++ + ++MKDR+TGR+RGFG+V FA A+ ++
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
+H + R++E K A P+++ + +IFV + S+V+ESDF+ +F
Sbjct: 64 EHFLGNRILEVKVATPKEEM------------RQPAKKVTRIFVARIPSSVSESDFRSHF 111
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
+++G ITD+ + D+N+++ RG GFIT+ S ++V+
Sbjct: 112 ERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVE 146
Score = 147 (56.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+G + + + + L++YF +G + +A I KD RGFGFV FA+ VA+ V +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 67 KHNIDGRMVEAKKAVPRDD 85
H I G+ V A P D+
Sbjct: 301 SHEICGQEVAIDSATPLDE 319
Score = 131 (51.2 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
++F+ I +E + +F YGE+ + + KD N+ + RG GF+ F+ E ++++
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 67 KHNIDGRMVEAKKAVPRDD 85
H++ G V +A P++D
Sbjct: 152 THDLGGTTVAVDRATPKED 170
Score = 112 (44.5 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
KIFVG L + D + YF +FG I D + D RGFGF+T+ D+V R
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVAR 299
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 253 (94.1 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 57/159 (35%), Positives = 87/159 (54%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFI G+S T +E L+ + G +++ V+M+D NT +RGFGF +A + V+
Sbjct: 15 KLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVGG+ E K Y
Sbjct: 75 RPHKMDGRVVEPKRAVSREDS---QRPGAHLT-------VKKIFVGGIKEDTEEHHLKDY 124
Query: 126 F-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F +Q+ I + +M D + + RGF F+T+D + VDK+
Sbjct: 125 FFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKI 163
Score = 167 (63.8 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAV-IMKDRNTGRARGFGFVVFAD-PAVAEIVI 64
K+F+GGI DT E LK+YF E +E + IM DR +G+ RGF FV F D V +IVI
Sbjct: 106 KIFVGGIKEDTEEHHLKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIVI 165
Query: 65 QEKHNIDGRMVEAKKAVPRDD 85
Q+ H ++G E +KA+ + +
Sbjct: 166 QKCHPVNGHDHEVRKALSKQE 186
Score = 143 (55.4 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+ GL+S T+ + + +Q G + D VVM D NT+ RGFGF TY + E VD V A
Sbjct: 15 KLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVMNA 74
Query: 167 VPKEL 171
P ++
Sbjct: 75 RPHKM 79
Score = 55 (24.4 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G DN FG G GR + + +S GY+G
Sbjct: 210 GFGGNDN-FGHGGNFSGRGGFSGSRGGGGYGSSGDGYNG 247
Score = 54 (24.1 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGG 393
G+G+ ++FG G G Y + G QSS+F GG
Sbjct: 247 GFGNDGSNFG-GGGSYN-DFGYYKNQSSNFGPMKGG 280
Score = 50 (22.7 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 361 SGDNSFGLG-AGGYGRNP----GTTLAQSSSFAASNGG 393
SG +FG G GG+G N G + F+ S GG
Sbjct: 198 SGSGNFGGGRGGGFGGNDNFGHGGNFSGRGGFSGSRGG 235
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 265 (98.3 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 54/158 (34%), Positives = 91/158 (57%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T ++ L+ +F + + + V+M+D N+ R+RGFG + +A + +
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K AV R+D +R +KIFVGG E + Y
Sbjct: 61 RPHKVDGRVVEPKVAVSREDS---HRPGAHLT-------VKKIFVGGSKEDTEEHHLRVY 110
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D +++VD +
Sbjct: 111 FEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNI 148
Score = 163 (62.4 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVIQ 65
K+F+GG DT E L+ YF YG++ IM D +G+ RGF FV F D +V IVIQ
Sbjct: 92 KIFVGGSKEDTEEHHLRVYFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQ 151
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 152 KYHTVNGHNCEVRKALLKQE 171
Score = 146 (56.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+GGL+ T+ + +F+Q+ T+TD V+M D N++R RGFG I Y + E VD A
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 167 VPKEL 171
P ++
Sbjct: 61 RPHKV 65
Score = 42 (19.8 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 361 SGDNSFGL--GAGGYG 374
SG FG+ G GGYG
Sbjct: 187 SGHGGFGVSHGGGGYG 202
Score = 41 (19.5 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 358 GYG-SGD--NSFGLGAGGYGRN-PGTTLAQSSSFAASNGG 393
GYG SGD N FG +G G SS GG
Sbjct: 200 GYGGSGDGYNGFGNDGSNFGGGMKGGNFGGRSSGPYGGGG 239
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 256 (95.2 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 55/160 (34%), Positives = 92/160 (57%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++ ++ L+E+F +G + + V+M+D T R+R F FV ++ V E+ +
Sbjct: 14 KLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYS--CVKEVDAAM 71
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
+ HN+DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 72 CAQPHNVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + VM D + + R F+T+D + VDK+
Sbjct: 122 DYFEKYGKIKTMEVMEDRLSGKERLL-FVTFDDHDTVDKI 160
Score = 148 (57.2 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R R F F+TY + VD
Sbjct: 13 RKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMC 72
Query: 166 AVP 168
A P
Sbjct: 73 AQP 75
Score = 50 (22.7 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 359 YGSGDNSFGLGAGGYGRNPG 378
+G G N +G GGYG G
Sbjct: 177 FGRGGNGYGNQGGGYGGGGG 196
Score = 46 (21.3 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 360 GSGDNSFGLGAGGYGRNPG 378
G G N FG G GYG G
Sbjct: 172 GRGGN-FGRGGNGYGNQGG 189
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 255 (94.8 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 73/230 (31%), Positives = 114/230 (49%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG++ T+E L+ +F +G + + V++ + T R+R FGFV +++ A+ +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
H +DG VE K+AV R+D + +K+FVGGL V E D ++
Sbjct: 68 SPHAVDGNTVELKRAVSREDS----------ARPGAHAKVKKLFVGGLKGDVAEGDLIEH 117
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVPKE 170
F QFGT+ ++ D + + RGFGF+ + + +A DK VK+AVPKE
Sbjct: 118 FSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
Query: 171 -LSPG-------PTRSPLGGYHYGLSRVNSFLN--GYTQGYTPSTVGGYG 210
+ G +R GG G R + L+ G G ++ GGYG
Sbjct: 178 DIHSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGGGGYNSYGGYG 227
Score = 51 (23.0 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 357 FG-YGSGDNSFG-LGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG Y +S+G + GG G G++ S+ GGY G
Sbjct: 260 FGSYSQHQSSYGPMKGGGGGGGGGSSWGGRSNSGPYRGGYGG 301
Score = 50 (22.7 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
G G G NS+G GG G G +S GG D
Sbjct: 215 GGGGGYNSYGGYGGGGGGGGGYNAYGGGGGGSSYGGSD 252
Score = 47 (21.6 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
GYG G G G YG G + S + GG+
Sbjct: 225 GYGGGGGGGG-GYNAYGGGGGGSSYGGSDYGNGFGGF 260
Score = 44 (20.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 358 GYGSGDNSFGLGAGG--YGRNP--------GTTLAQSSSFAASNGGYDG 396
G G G N++G G GG YG + G+ SS+ GG G
Sbjct: 231 GGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKGGGGG 279
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 59/160 (36%), Positives = 94/160 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KL IGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V E+ V
Sbjct: 9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDAAV 66
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 67 CARPHKVDGRVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLR 116
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 117 DYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKI 156
Score = 171 (65.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 34/80 (42%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+D +G+ RGF FV F D V +IV Q
Sbjct: 100 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQ 159
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 160 KYHIINGHNCEVKKALSKQE 179
Score = 157 (60.3 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+ +GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 8 RKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVC 67
Query: 166 AVPKEL 171
A P ++
Sbjct: 68 ARPHKV 73
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 256 (95.2 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 66/202 (32%), Positives = 101/202 (50%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG++ T+E L+ +F +G + + V++ + T R+R FGFV +++ A+ +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
H +DG VE K+AV R+D + +K+FVGGL V E D ++
Sbjct: 68 SPHAVDGNTVELKRAVSREDS----------ARPGAHAKVKKLFVGGLKGDVAEGDLIEH 117
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVPKE 170
F QFG + ++ D + + RGFGF+ + S +A DK VK+AVPKE
Sbjct: 118 FSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
Query: 171 ---LSPGPTRSPLGGYHYGLSR 189
G R+ GG G R
Sbjct: 178 DIHAGGGGARAARGGRGGGRGR 199
Score = 48 (22.0 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 357 FG-YGSGDNSFG-LGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG Y +S+G + +GG G G+ +S+S GGY G
Sbjct: 258 FGSYSQHQSSYGPMKSGGGGGGGGSWGGRSNS-GPYRGGYGG 298
Score = 44 (20.5 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 358 GYGS-GDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G GS G + +G G GG+G + QSS +GG G
Sbjct: 242 GGGSYGGSDYGNGFGGFG---SYSQHQSSYGPMKSGGGGG 278
Score = 43 (20.2 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG-TTLAQSSSFAASNGGYDG 396
G G G + GL GG G G + + A GG G
Sbjct: 203 GGGGGRDQNGLAKGGGGGGGGYNSYGGYGGYGAYGGGGGG 242
Score = 42 (19.8 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT 379
GYG G ++G G GG G G+
Sbjct: 229 GYG-GYGAYGGGGGGGGSYGGS 249
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 272 (100.8 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 68/165 (41%), Positives = 94/165 (56%)
Query: 12 GISWDTNE----ERLKEYFSTYGEVVEAVIMKDRNT--GRARGFGFVVFADPA-VAEIVI 64
G SW E E L+EYF +GEV E ++M+D T R RGFGFV F D A V +++
Sbjct: 109 GPSWSEGECVVTEGLREYFGQFGEVKECLVMRDPLTKRSRCRGFGFVTFMDQAGVDKVLA 168
Query: 65 QEKHNIDGRMVEA--KKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDF 122
Q +H +D + V+ K A PR Q + RT+KIFVGGL+ T D
Sbjct: 169 QSRHELDSKTVQIDPKVAFPRRAQPKVQMVT----------RTKKIFVGGLSVNTTVEDV 218
Query: 123 KKYFDQFGTIT--DVVVMYDHNTQRPRG--FGFITYDSEEAVDKV 163
K+YF+QF + D ++M+D T R RG FGF+T++SE+ V+KV
Sbjct: 219 KQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVEKV 263
Score = 141 (54.7 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVV--EAVIMKDRNTGRARG--FGFVVFADPAVAEI 62
K+F+GG+S +T E +K+YF + +V +A++M D+ T R RG FGFV F + E
Sbjct: 203 KIFVGGLSVNTTVEDVKQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVEK 262
Query: 63 VIQ-EKHNIDGRMV--EAKKAVPRD 84
V + H I+ +MV E KKA P++
Sbjct: 263 VCEIHFHEINNKMVQVECKKAQPKE 287
Score = 41 (19.5 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 172 SPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
SPGP + L YG + +S ++ Y +P+ G+G
Sbjct: 419 SPGPM-AEL----YGAANQDSGVSSYISAASPAPSTGFG 452
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 251 (93.4 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 55/160 (34%), Positives = 89/160 (55%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIG +S++T ++ L+E+F +G ++ V+M+D R+R FGFV V E+ +
Sbjct: 19 KLFIGCLSFETTDDSLREHFEKWG-TLDCVVMRDLQIKRSRSFGFVSTYS-CVKEVDAAM 76
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DG +VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 77 CARPHKVDGHVVEPKRAVSREDSV----------KPGAHLTVKKIFVGGIKEDTEEYNLR 126
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 127 DYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 166
Score = 184 (69.8 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D + ++Q+
Sbjct: 110 KIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQK 169
Query: 67 KHNIDGRMVEAKKAVPRDD 85
H I+G E KKAV + +
Sbjct: 170 YHTINGHNYEVKKAVSKQE 188
Score = 115 (45.5 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFI-TYDSEEAVDKVK 164
RK+F+G L+ T+ +++F+++GT+ D VVM D +R R FGF+ TY + VD
Sbjct: 18 RKLFIGCLSFETTDDSLREHFEKWGTL-DCVVMRDLQIKRSRSFGFVSTYSCVKEVDAAM 76
Query: 165 RAVPKEL 171
A P ++
Sbjct: 77 CARPHKV 83
Score = 52 (23.4 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 359 YGSGDNSFGLGAGGYGRNPG 378
+G G +FG G GYG G
Sbjct: 202 FGGGGGNFGHGGNGYGYGDG 221
Score = 43 (20.2 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 359 YGSGDNSFGLGAGG 372
+G G N +G G GG
Sbjct: 209 FGHGGNGYGYGDGG 222
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 60/163 (36%), Positives = 96/163 (58%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
Q + K+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A +KIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Score = 146 (56.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HNIDGRMVEAKKAVPRD 84
K HN+ E K A+ ++
Sbjct: 243 KYHNVGLSKCEIKVAMSKE 261
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 237 (88.5 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 51/158 (32%), Positives = 83/158 (52%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S+ T E L+ +F + + + V M+D NT R+RGFGFV + + +
Sbjct: 6 KLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMNA 65
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DG VE K+AV R+D ++I VGG+ E + Y
Sbjct: 66 RPHKVDGSFVEPKRAVSREDS----------QSPGAHLTVKEISVGGIKEDTEEHHLRDY 115
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+ +G I + +M D + + + F F+T+D ++VDK+
Sbjct: 116 FEHYGKIEVIEIMTDRGSGK-KEFAFVTFDDHDSVDKI 152
Score = 161 (61.7 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T + +F+Q+ T+TD V M D NT+R RGFGF+TY + E VD
Sbjct: 5 RKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMN 64
Query: 166 AVPKEL 171
A P ++
Sbjct: 65 ARPHKV 70
Score = 137 (53.3 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
++ +GGI DT E L++YF YG++ IM DR +G+ + F FV F D +V +IVIQ
Sbjct: 97 EISVGGIKEDTEEHHLRDYFEHYGKIEVIEIMTDRGSGK-KEFAFVTFDDHDSVDKIVIQ 155
Query: 66 EKHNIDGRMVE 76
+ H ++G E
Sbjct: 156 KYHTVNGHNCE 166
Score = 65 (27.9 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 358 GYGSGDN-SFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G GS D + G G GG+G G+ L Q + GGY G
Sbjct: 221 GSGSYDRYNNGGGGGGFGAGSGSNLGQFFAKPRKQGGYGG 260
Score = 57 (25.1 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAA-SNGGYDGVF 398
GY G +G G G G N G+ S S+ +NGG G F
Sbjct: 197 GYCEGSRGYGSGGQGDG-NQGSGYGGSGSYDRYNNGGGGGGF 237
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 59/163 (36%), Positives = 96/163 (58%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
Q + K+FIGG+SWDT ++ LK+YFS +G+VV+ + D TGR+RGFGFV+F + +V
Sbjct: 91 QREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A +KIFVGGL+ E
Sbjct: 151 KVMDQKEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEE 194
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 195 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 237
Score = 146 (56.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 67 K-HNIDGRMVEAKKAVPRD 84
K HN+ E K A+ ++
Sbjct: 241 KYHNVGLSKCEIKVAMSKE 259
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 59/158 (37%), Positives = 94/158 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVIQ 65
K+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V +++ Q
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 66 EKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
++H ++G++++ K+A +KIFVGGL+ E ++Y
Sbjct: 62 KEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEEKIREY 105
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 106 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 143
Score = 146 (56.5 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 87 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 146
Query: 67 K-HNIDGRMVEAKKAVPRD 84
K HN+ E K A+ ++
Sbjct: 147 KYHNVGLSKCEIKVAMSKE 165
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 256 (95.2 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 76/233 (32%), Positives = 116/233 (49%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F G + + V+M+D T +RGFGFV + V E+ +
Sbjct: 37 KLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSS--CVEEVDAAM 94
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 95 CARPHKVDGRVVEPKRAVSREDSV----------KPGAHLMVKKIFVGGIKEDTEEYNLR 144
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVP 168
YF+++G T+ + ++ RGF F+T+D ++ VDK VKRA+
Sbjct: 145 DYFEKYGK-TETIEGRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRALS 202
Query: 169 KELSP--GPTRSPLGGYHYGLSRVNSF--LNGYTQGYTPS--TVGGYGLRMDG 215
K+ P G R GG + R +F GY G S + GG G R G
Sbjct: 203 KQEMPCAGSQRGRGGGSSNFMGRGGNFGGREGYGGGGGGSRGSYGGSGDRYHG 255
Score = 146 (56.5 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F++ GT+TD VVM D T+ RGFGF+T E VD
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 166 AVPKEL 171
A P ++
Sbjct: 96 ARPHKV 101
Score = 44 (20.5 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 360 GSGDNSFGLGA--GGYGRNP 377
GSGD G G G YG P
Sbjct: 248 GSGDRYHGFGGDGGNYGGGP 267
Score = 41 (19.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G +G G GG + G + + F G Y G
Sbjct: 227 GNFGGREGYGGGGGGSRGSYGGSGDRYHGFGGDGGNYGG 265
Score = 39 (18.8 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 360 GSGDNSFGLGA--GGYGRNPGTTLAQSSSFAASNGGYDG 396
G GD+ G G GG G A+ + GG G
Sbjct: 320 GDGDDDGGAGGPEGGAAGGAGGGTARGGGGEGAAGGAGG 358
Score = 37 (18.1 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 12/39 (30%), Positives = 13/39 (33%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G GD G G GG G +GG G
Sbjct: 292 GGGGGDGDGGDGDGGSHGGGGDDDDDDDGDGDDDGGAGG 330
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 256 (95.2 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 76/233 (32%), Positives = 116/233 (49%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F G + + V+M+D T +RGFGFV + V E+ +
Sbjct: 37 KLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSS--CVEEVDAAM 94
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D + +KIFVGG+ E + +
Sbjct: 95 CARPHKVDGRVVEPKRAVSREDSV----------KPGAHLMVKKIFVGGIKEDTEEYNLR 144
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVP 168
YF+++G T+ + ++ RGF F+T+D ++ VDK VKRA+
Sbjct: 145 DYFEKYGK-TETIEGRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRALS 202
Query: 169 KELSP--GPTRSPLGGYHYGLSRVNSF--LNGYTQGYTPS--TVGGYGLRMDG 215
K+ P G R GG + R +F GY G S + GG G R G
Sbjct: 203 KQEMPCAGSQRGRGGGSSNFMGRGGNFGGREGYGGGGGGSRGSYGGSGDRYHG 255
Score = 146 (56.5 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F++ GT+TD VVM D T+ RGFGF+T E VD
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 166 AVPKEL 171
A P ++
Sbjct: 96 ARPHKV 101
Score = 44 (20.5 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 360 GSGDNSFGLGA--GGYGRNP 377
GSGD G G G YG P
Sbjct: 248 GSGDRYHGFGGDGGNYGGGP 267
Score = 41 (19.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G +G G GG + G + + F G Y G
Sbjct: 227 GNFGGREGYGGGGGGSRGSYGGSGDRYHGFGGDGGNYGG 265
Score = 39 (18.8 bits), Expect = 3.8e-24, Sum P(2) = 3.8e-24
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 246 SFGANANFNSNLSYGRGLSPYYIGNPNRYG 275
++G +++S SYG G P + G R G
Sbjct: 262 NYGGGPSYSSRGSYGGG-GPSF-GTGGRVG 289
Score = 37 (18.1 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 359 YGSGDNSFGLG 369
YG G SFG G
Sbjct: 275 YGGGGPSFGTG 285
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 61/135 (45%), Positives = 87/135 (64%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M S + K+FIGG+SW T+ + L++YFS +GE+ E ++M+D T R+RGFGFV FADPA
Sbjct: 12 MFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 71
Query: 61 EIVI-QEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGL-ASTVT 118
+ V+ Q H +D + ++ K A PR Q + RT+KIFVGGL A+TV
Sbjct: 72 DKVLGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVV 119
Query: 119 ESDFKKYFDQFGTIT 133
E D K+YF+QFG ++
Sbjct: 120 E-DVKQYFEQFGKVS 133
Score = 136 (52.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
K+F+GGL+ + + YF +FG I + +VM D T+R RGFGF+T+ +VDKV
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 195 (73.7 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 37/82 (45%), Positives = 54/82 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
+ SD GKLFIGG+S+DT E+ L+E FS YG + + +++DR T R+RGFGFV F +P A
Sbjct: 18 IMSDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDA 77
Query: 61 E--IVIQEKHNIDGRMVEAKKA 80
+ + +DGRM+ +A
Sbjct: 78 KDAMAAMNGKQVDGRMIRVDEA 99
Score = 140 (54.3 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
Identities = 38/113 (33%), Positives = 58/113 (51%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVKR 165
K+F+GGL+ TE ++ F ++GTI V V+ D T R RGFGF+T+++ E+A D +
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 166 AVPKELS--------PGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
K++ G + GG+ G SR G+ +G GGYG
Sbjct: 84 MNGKQVDGRMIRVDEAGKSGGRSGGFRGG-SRGGG--RGFFRGSRGRGGGGYG 133
Score = 72 (30.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 359 YGSGDNSFGLGAGGYG-RNPGTTLAQSSSFAASNGGYD 395
YG GD S+G G GGY R+ G + + GGYD
Sbjct: 170 YGGGDRSYGGGGGGYSNRSGGYSSGGGYRDNRNQGGYD 207
Score = 59 (25.8 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
YG GD S+G G GYG + S+ GGY
Sbjct: 150 YG-GDRSYGGGDRGYGGGERSYGGGDRSYGGGGGGY 184
Score = 49 (22.3 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYG 275
G + SFG + ++ + SYG G Y G YG
Sbjct: 139 GSDRSFGGDRSYGGDRSYGGG-DRGYGGGERSYG 171
Score = 45 (20.9 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYG 275
G + S+G++ +F + SYG S Y G YG
Sbjct: 133 GGDRSYGSDRSFGGDRSYGGDRS--YGGGDRGYG 164
Score = 39 (18.8 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 358 GYGSGDNSFGLGAGGYG 374
G G S G G GGYG
Sbjct: 117 GRGFFRGSRGRGGGGYG 133
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 59/158 (37%), Positives = 91/158 (57%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S+ T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV R+D R +KIFVG E + Y
Sbjct: 68 RPHKVDGRVVEPKRAVSREDS---RRPGAHLT-------VKKIFVG---EDTEEHHLRDY 114
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 115 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 152
Score = 171 (65.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD A
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 167 VPKEL 171
P ++
Sbjct: 68 RPHKV 72
Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+G DT E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 99 KIFVGE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 155
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 156 KYHTVNGHNCEVRKALSKQE 175
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 245 (91.3 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 54/157 (34%), Positives = 88/157 (56%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ F G + + V+ +D N R+RGFGFV +A V E+ +
Sbjct: 15 KLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYA--TVEEV--KG 70
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
+ ++D R+VE K A+ R+D +K+FVGG+ E + YF
Sbjct: 71 RPHVDERVVEPKWAISREDS----------QRPGAHLPVKKVFVGGIKEDTEEHHLRDYF 120
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+Q+G I + +M D + + RGF FI +D +++DK+
Sbjct: 121 EQYGRIEVIEIMTDQGSGK-RGFAFILFDDHDSIDKI 156
Score = 160 (61.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG + IM D+ +G+ RGF F++F D ++ +IVIQ
Sbjct: 101 KVFVGGIKEDTEEHHLRDYFEQYGRIEVIEIMTDQGSGK-RGFAFILFDDHDSIDKIVIQ 159
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H +G E +KA+ + +
Sbjct: 160 KYHTGNGLNCEVRKALSKQE 179
Score = 144 (55.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160
RK+F+GGL+ T+ + F+Q GT+TD VV D N +R RGFGF+TY + E V
Sbjct: 14 RKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYATVEEV 68
Score = 45 (20.9 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 358 GYGSGDNSFGLGA-----GGYGRNPGTTLAQSSSFAASNGGYDG 396
G G DN FG G GG+G + G S + + G DG
Sbjct: 197 GLGGSDN-FGRGGNFSGRGGFGGSRGGGGYAGSGYCYNGFGNDG 239
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 56/158 (35%), Positives = 89/158 (56%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+VE K+AV +D R KIFVG + E + Y
Sbjct: 71 RPHKVDGRVVEPKRAVSIEDS---QRPGAYL--------NMKIFVGAIKEDTEEHHLRDY 119
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F Q+G + ++ D + + RGF F+T+D ++VDK+
Sbjct: 120 FGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKI 157
Score = 177 (67.4 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 32/68 (47%), Positives = 47/68 (69%)
Query: 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+ RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 8 QVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 67
Query: 164 KRAVPKEL 171
A P ++
Sbjct: 68 MNARPHKV 75
Score = 172 (65.6 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 37/84 (44%), Positives = 53/84 (63%)
Query: 5 NGKLFIGGISWDTNEERLKEYFSTYG--EVVEAVIMKDRNTGRARGFGFVVFAD-PAVAE 61
N K+F+G I DT E L++YF YG EV+E I+ DR +G+ RGF FV F D +V +
Sbjct: 99 NMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIE--IVTDRGSGKKRGFAFVTFDDRDSVDK 156
Query: 62 IVIQEKHNIDGRMVEAKKAVPRDD 85
IVIQ+ H ++G E +KA + +
Sbjct: 157 IVIQKYHTVNGHNCEVRKAPSKQE 180
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 280 (103.6 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 58/163 (35%), Positives = 101/163 (61%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMK-DRNTGRARGFGFVVFADPAVA 60
+S +GK+F+GG+ ++ E LK+YFS +GEV E++++K ++RGFGFV F DP+V
Sbjct: 102 KSISGKIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVI 161
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+ VI H+I+G+ VE ++A+P+++ + +K+FVGGL +T
Sbjct: 162 DEVILINHSIEGKNVEIRRAIPKEEM-------------TEEPKKQKLFVGGLPKHITSD 208
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
DF YF +FG I++ ++ + N +GFGFI + +E+V+++
Sbjct: 209 DFNNYFSEFGEISEYNLLTEKNGTI-KGFGFICF-KDESVNEI 249
Score = 137 (53.3 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLF+GG+ + YFS +GE+ E ++ ++N G +GFGF+ F D +V EI++ E
Sbjct: 195 KLFVGGLPKHITSDDFNNYFSEFGEISEYNLLTEKN-GTIKGFGFICFKDESVNEIILNE 253
Query: 67 K-HNIDGRMVEAKKA 80
+ H I G+ V+ + A
Sbjct: 254 QQHIILGKRVDIRIA 268
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 180 (68.4 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 36/80 (45%), Positives = 56/80 (70%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D+GK+FI G+SWDT+++ L T+GEVV+ +I D TGR+RGFGFV+F + A +
Sbjct: 12 QQDDGKMFIRGLSWDTSKKDL-----TFGEVVDCIIETDPVTGRSRGFGFVLFKEAASVD 66
Query: 62 IVIQEK-HNIDGRMVEAKKA 80
V++ K H +D +++ K+A
Sbjct: 67 KVLELKEHKLDSMLIDPKRA 86
Score = 139 (54.0 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE++KEY +GE+ + D T RGF F+ + D + +++
Sbjct: 95 KVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLEN 154
Query: 67 K-HNIDGRMVEAKKAVPRD 84
+ H I E K A P++
Sbjct: 155 RYHQIGSGKCEIKVAEPKE 173
Score = 119 (46.9 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+K+FVGGL+ E K+Y FG I ++ + D T RGF FITY E+ V K+
Sbjct: 94 KKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKL 151
Score = 45 (20.9 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 246 SFGANANFN-SNLSYGRGLSPYYIGN-PNRY 274
S+G FN N YG+G + Y GN N Y
Sbjct: 237 SYGYT-EFNYGNYGYGQGYADYRGGNHQNNY 266
Score = 43 (20.2 bits), Expect = 6.3e-23, Sum P(3) = 6.3e-23
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 244 NPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
N ++G + N++ SYG + + GN YG GY
Sbjct: 223 NSAYGGDQNYSDYGSYG--YTEFNYGN---YGYGQGY 254
Score = 38 (18.4 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 185 YGLSRVNSFLNGYTQGYTPSTVGGY 209
YG + N GY QGY G +
Sbjct: 238 YGYTEFNYGNYGYGQGYADYRGGNH 262
Score = 37 (18.1 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 181 GGYH--YGLSRVNSFLNGYTQGYTPSTVGGYG 210
G Y+ YG + S Y GYT G YG
Sbjct: 220 GNYNSAYGGDQNYSDYGSY--GYTEFNYGNYG 249
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 269 (99.8 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 57/160 (35%), Positives = 89/160 (55%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+FIGG+S T E L+ +FS +G V +AV+++D + +RGFGFV + DP EIV +
Sbjct: 33 KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRA 92
Query: 67 K-HNIDGRMVEAKKAVPRDDQIV---LNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDF 122
+ H ID ++VE K A+PR D + +++IF+GGL E+
Sbjct: 93 RPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIV 152
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
++YF QFG + V ++ D T R R FGF+ + + +K
Sbjct: 153 REYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEK 192
Score = 148 (57.2 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RKIF+GGL++ T + +F QFG + D VV+ D + RGFGF+TY ++V+ V+R
Sbjct: 32 RKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQR 91
Query: 166 AVP 168
A P
Sbjct: 92 ARP 94
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 223 (83.6 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 53/166 (31%), Positives = 88/166 (53%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q KLFIGG+S++T+++ L+E+F + + V+M D T R+R FGFV ++ V E
Sbjct: 9 QEQLSKLFIGGLSFETSDDSLREHFEQWDMLTHCVVM-DPQTKRSRVFGFVTYS--CVKE 65
Query: 62 I---VIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVT 118
+ + H +DG +VE K+ R+D + +KIF+GG+
Sbjct: 66 VDAAMCARPHKVDGCVVEPKRPF-REDSV----------KPVVCLLAKKIFIGGIKEDTE 114
Query: 119 ESDFKKYFDQFGTITDVVVMY-DHNTQRPRGFGFITYDSEEAVDKV 163
E + + YF+++G I + +M D + RGF F+T+D VDK+
Sbjct: 115 EHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKI 160
Score = 163 (62.4 bits), Expect = 9.8e-13, Sum P(2) = 9.8e-13
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMK-DRNTGRARGFGFVVFADP-AVAEIVI 64
K+FIGGI DT E L++YF YG++ IM+ DR +G RGF FV F D V +IV+
Sbjct: 103 KIFIGGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIVV 162
Query: 65 QEKHNIDGRMVEAKKAVPRDD 85
Q+ H I+ + KKA + +
Sbjct: 163 QKCHTINRHNCDVKKAPSKQE 183
Score = 119 (46.9 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+GGL+ ++ +++F+Q+ +T VVM D T+R R FGF+TY + VD A
Sbjct: 14 KLFIGGLSFETSDDSLREHFEQWDMLTHCVVM-DPQTKRSRVFGFVTYSCVKEVDAAMCA 72
Query: 167 VPKEL 171
P ++
Sbjct: 73 RPHKV 77
Score = 58 (25.5 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
+G G +FG G G +G G + S+ +G Y+G D
Sbjct: 207 FGHGRRNFGHG-GNFGGRGGGSGGSRGSYGGGDGRYNGFGGD 247
Score = 42 (19.8 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG+G G G+GG + G + + F Y+G
Sbjct: 214 FGHGGNFGGRGGGSGGSRGSYGGGDGRYNGFGGDGCNYNG 253
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 56/158 (35%), Positives = 93/158 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S DT +E+L YFS +G VV+A++++D NT +RGFGFV FA AE + +
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 130
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESD-FKK 124
+ H + G+ V++K+A+PR+ ++ K+ + G+ + V D +
Sbjct: 131 RPHKLGGKTVDSKRAIPREQ---MSSMIPPPFFETDPAPGCKLLLNGITNGVHSVDSLRV 187
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
YF+ FGT+ V ++ +PRG GF+ Y+ +E+ D+
Sbjct: 188 YFETFGTLDQVEIL-----GQPRGLGFVIYEDKESADR 220
Score = 140 (54.3 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ YF Q+G + D +V+ D NT+ RGFGF+T+ S + +
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 129
Query: 166 AVPKELSPGPT 176
P +L G T
Sbjct: 130 DRPHKLG-GKT 139
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 54/157 (34%), Positives = 88/157 (56%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T ++ L+E+F + + + V+M+D T R+RGFGFV V +
Sbjct: 14 KLFIGGLSFETTDDSLREHFK-WDTLTDCVVMRDPQTERSRGFGFVYSCVEEVDAAMCAR 72
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
H +DG +VE K+A+ R+D + +KIFVGG+ E + + YF
Sbjct: 73 PHKVDGHVVEPKRAISREDSV----------KPGAHLMVKKIFVGGIKEDTEEYNLRDYF 122
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+ +G I + V+ D + + RGF F+T+D + VDK+
Sbjct: 123 E-YGNIKTIEVVEDRQSGKKRGFAFLTFDDHDTVDKI 158
Score = 133 (51.9 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F ++ T+TD VVM D T+R RGFGF+ Y E VD
Sbjct: 13 RKLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFV-YSCVEEVDAAMC 70
Query: 166 AVPKEL 171
A P ++
Sbjct: 71 ARPHKV 76
Score = 124 (48.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIV 63
K+F+GGI DT E L++YF YG + +++DR +G+ RGF F+ F D V +IV
Sbjct: 103 KIFVGGIKEDTEEYNLRDYFE-YGNIKTIEVVEDRQSGKKRGFAFLTFDDHDTVDKIV 159
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 232 (86.7 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 53/157 (33%), Positives = 85/157 (54%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLF GG++++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A P E V ++
Sbjct: 22 KLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA-PV--EEVDRK 78
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
H + +AV R+D +KIFVGG+ E + Y
Sbjct: 79 DHTRWMEELWNLRAVSREDS----------QTPGAHLTVKKIFVGGIKEDTEEHHLRDYS 128
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+Q+G I V +M D + + GF F+T+D ++VDK+
Sbjct: 129 EQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKI 165
Score = 170 (64.9 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++Y YG++ IM DR +G+ GF FV F D +V +IVIQ
Sbjct: 109 KIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQ 168
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 169 KYHTVNGHNCEVRKALSKQE 188
Score = 163 (62.4 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
RK+F GGL T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY E VD+
Sbjct: 21 RKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVDR 77
Score = 44 (20.5 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y + ++FG GG GR+ G FA + GGY G
Sbjct: 208 FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGDQYFAKPQNQGGYGG 252
Score = 38 (18.4 bits), Expect = 7.0e-22, Sum P(2) = 7.0e-22
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 179 PLGGYHYGLSRVNSFLNGYTQGYT-PSTVGGYG 210
P+ G ++G R + G Q + P GGYG
Sbjct: 220 PMKGGNFG-GRSSGPYGGGDQYFAKPQNQGGYG 251
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 233 (87.1 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 57/160 (35%), Positives = 89/160 (55%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F G + + V+M+D T +RGFGFV ++ V E+ +
Sbjct: 33 KLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYS--CVEEVDAAM 90
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE KKAV R+D + L +K FVGG+ E + K
Sbjct: 91 CAWLHKVDGRVVEPKKAVSREDSVKLG----------AHLMVKKTFVGGIKEDTEEYNLK 140
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + M + + R RGF F + + VDK+
Sbjct: 141 DYFEKYGKI-ETEGMENRQSGR-RGFAFAIFGDHD-VDKI 177
Score = 175 (66.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K F+GGI DT E LK+YF YG++ E M++R +GR RGF F +F D V +IV+Q+
Sbjct: 124 KTFVGGIKEDTEEYNLKDYFEKYGKI-ETEGMENRQSGR-RGFAFAIFGDHDVDKIVVQK 181
Query: 67 KHNIDGRMVEAKKAVPR 83
H I+G E KKA+ +
Sbjct: 182 HHTINGHNCEVKKALSK 198
Score = 140 (54.3 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
RK+F+GGL+ + +++F + GT+TD VVM D T+ RGFGF+TY E VD
Sbjct: 32 RKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVD 87
Score = 72 (30.4 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
G G N FG G GGYG G SF +GGY+GV D
Sbjct: 219 GCGGN-FG-GKGGYGGGGG---GSRGSFGGGDGGYNGVGGD 254
Score = 53 (23.7 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 358 GYGSGDN----SFGLGAGGYGR--NPGTTLAQSSSFAASNGGYDG 396
GYG G SFG G GGY G ++ S GGY G
Sbjct: 229 GYGGGGGGSRGSFGGGDGGYNGVGGDGGNYGGGPGYS-SRGGYGG 272
Score = 44 (20.5 bits), Expect = 2.3e-21, Sum P(3) = 2.3e-21
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG 378
GYG G +G GG G G
Sbjct: 269 GYGGGGPGYGNQGGGSGGGGG 289
Score = 43 (20.2 bits), Expect = 2.3e-21, Sum P(3) = 2.3e-21
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 174 GPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
G +R GG G + V Y G S+ GGYG
Sbjct: 235 GGSRGSFGGGDGGYNGVGGDGGNYGGGPGYSSRGGYG 271
Score = 41 (19.5 bits), Expect = 4.7e-21, Sum P(3) = 4.7e-21
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 358 GYGSGDNSFGLGAGGYGRNP 377
G G G S G GG R P
Sbjct: 341 GGGGGGGSSGSSGGGGSRRP 360
Score = 41 (19.5 bits), Expect = 4.7e-21, Sum P(3) = 4.7e-21
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGG 393
G G G S G G G GR G + + + GG
Sbjct: 285 GGGGGGGSGGGGREGRGRGGGRGGGEGNGSDGNCGG 320
Score = 41 (19.5 bits), Expect = 4.7e-21, Sum P(3) = 4.7e-21
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
G G G+ G G GG G + G + GG +G +D
Sbjct: 274 GPGYGNQGGGSGGGGGGGSGGGG-REGRGRGGGRGGGEGNGSD 315
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 214 (80.4 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 54/157 (34%), Positives = 80/157 (50%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFI G+S++T +E L +F G+ V+M+ NT +RGFGFV +
Sbjct: 11 KLFIRGLSFETIDESLSSHFEM-GKAHRLVVMRVPNTKHSRGFGFVTKPWWRSLAAMNAR 69
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
H +D R+VE K+ V R D R +KIFVGG+ E + F
Sbjct: 70 PHKVDERVVEPKRDVSRGDS---QRPHAHLT-------VKKIFVGGIQEGTEEHHLRNNF 119
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+Q+G I D+ +M D + + RGF F T+D ++VDK+
Sbjct: 120 EQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKI 155
Score = 146 (56.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI T E L+ F YG++ + IM DR + + RGF F F D +V +IVIQ
Sbjct: 100 KIFVGGIQEGTEEHHLRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQ 158
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E ++A+ + +
Sbjct: 159 KYHTVNGHNCEVREALSKQE 178
Score = 90 (36.7 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT---YDSEEAVD- 161
RK+F+ GL+ + +F+ G +VVM NT+ RGFGF+T + S A++
Sbjct: 10 RKLFIRGLSFETIDESLSSHFEM-GKAHRLVVMRVPNTKHSRGFGFVTKPWWRSLAAMNA 68
Query: 162 ---KV-KRAV-PK-ELSPGPTRSPLGGYHYGLSRVNSFLNGYTQG 200
KV +R V PK ++S G ++ P H L+ F+ G +G
Sbjct: 69 RPHKVDERVVEPKRDVSRGDSQRP----HAHLTVKKIFVGGIQEG 109
Score = 63 (27.2 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYGSG +G GYG G+ S + S GG+ G
Sbjct: 205 GYGSGGQGYGNQGSGYG---GSGSYDSYNNCGSGGGFGG 240
Score = 55 (24.4 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNG 392
FG GSG N FG G G Y + G QSS+F G
Sbjct: 238 FGGGSGSN-FG-GGGSYN-DFGNYNDQSSNFGPMKG 270
Score = 41 (19.5 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 358 GYG-SGD--NSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG SGD N FG GYG + GY G
Sbjct: 188 GYGGSGDGYNGFGKKHRGYGSG-------GQGYGNQGSGYGG 222
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 214 (80.4 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 54/157 (34%), Positives = 80/157 (50%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFI G+S++T +E L +F G+ V+M+ NT +RGFGFV +
Sbjct: 27 KLFIRGLSFETIDESLSSHFEM-GKAHRLVVMRVPNTKHSRGFGFVTKPWWRSLAAMNAR 85
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
H +D R+VE K+ V R D R +KIFVGG+ E + F
Sbjct: 86 PHKVDERVVEPKRDVSRGDS---QRPHAHLT-------VKKIFVGGIQEGTEEHHLRNNF 135
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+Q+G I D+ +M D + + RGF F T+D ++VDK+
Sbjct: 136 EQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKI 171
Score = 146 (56.5 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI T E L+ F YG++ + IM DR + + RGF F F D +V +IVIQ
Sbjct: 116 KIFVGGIQEGTEEHHLRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQ 174
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E ++A+ + +
Sbjct: 175 KYHTVNGHNCEVREALSKQE 194
Score = 90 (36.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT---YDSEEAVD- 161
RK+F+ GL+ + +F+ G +VVM NT+ RGFGF+T + S A++
Sbjct: 26 RKLFIRGLSFETIDESLSSHFEM-GKAHRLVVMRVPNTKHSRGFGFVTKPWWRSLAAMNA 84
Query: 162 ---KV-KRAV-PK-ELSPGPTRSPLGGYHYGLSRVNSFLNGYTQG 200
KV +R V PK ++S G ++ P H L+ F+ G +G
Sbjct: 85 RPHKVDERVVEPKRDVSRGDSQRP----HAHLTVKKIFVGGIQEG 125
Score = 63 (27.2 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYGSG +G GYG G+ S + S GG+ G
Sbjct: 205 GYGSGGQGYGNQGSGYG---GSGSYDSYNNCGSGGGFGG 240
Score = 44 (20.5 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 357 FGYGSGDNSFGLGAGGY 373
FG GSG N FG G G Y
Sbjct: 238 FGGGSGSN-FG-GGGSY 252
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 204 (76.9 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 50/160 (31%), Positives = 83/160 (51%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + D R+RGFGF+ ++ V E+ V
Sbjct: 3 KLFIGGLSFETTDDSLREHFEKWGTLT------DCGNKRSRGFGFLTYS--CVEEVDAAV 54
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H R+V K+AV R+D + +K++VGG+ E + +
Sbjct: 55 CARPHKAAVRVV-GKRAVSREDSV----------KPGAHLMVKKLYVGGIKEDTEEYNLR 103
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF ++G I + VM + + RGF F+T+D + VDK+
Sbjct: 104 GYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKI 143
Score = 160 (61.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KL++GGI DT E L+ YF YG++ +M+ R +G+ RGF FV F D + ++Q+
Sbjct: 87 KLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQK 146
Query: 67 KHNIDGRMVEAKKAVPRDDQ 86
H I+G E K + ++ Q
Sbjct: 147 HHAINGNNCEVGKVLSKEMQ 166
Score = 122 (48.0 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD +R RGFGF+TY E VD
Sbjct: 2 RKLFIGGLSFETTDDSLREHFEKWGTLTDC------GNKRSRGFGFLTYSCVEEVDAAVC 55
Query: 166 AVP 168
A P
Sbjct: 56 ARP 58
Score = 72 (30.4 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQS----SSFAASNGGYDG 396
+G GDN FG AG YG PG + + + GGY G
Sbjct: 210 YGGNGGDNGFGGDAGSYGSRPGYSSRRGYGGGPGYGNQGGGYGG 253
Score = 50 (22.7 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
G G +FG G GGYG G S+ NGG +G D
Sbjct: 185 GGNFGGRNFG-GRGGYGGGGG---GSRGSYGG-NGGDNGFGGD 222
Score = 46 (21.3 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG 378
GYG G +G GGYG G
Sbjct: 237 GYGGGPG-YGNQGGGYGGGGG 256
Score = 44 (20.5 bits), Expect = 5.7e-19, Sum P(2) = 5.7e-19
Identities = 12/37 (32%), Positives = 13/37 (35%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+ N G G GRN G S G Y G
Sbjct: 176 GASGNFMGRGGNFGGRNFGGRGGYGGGGGGSRGSYGG 212
Score = 41 (19.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 246 SFGANANFNSNLSYGRGLSPYYIGNPNRYG 275
S+G+ ++S YG G P Y YG
Sbjct: 225 SYGSRPGYSSRRGYGGG--PGYGNQGGGYG 252
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 160 (61.4 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI 62
+++ K+F+GGIS + N E L +F+ YGEV +A + DR GR+RGF FV F ++
Sbjct: 26 NEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKL 85
Query: 63 VIQEKHN-IDGRMVEAKKAVPRDDQIV 88
+ + I G+ VE K A R+++ V
Sbjct: 86 ALAAREQTIKGKSVEVKPAKSRENKKV 112
Score = 140 (54.3 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
+K+FVGGL S +E D + +F+QFG + D+ +D T+ R F FI ++ EE+ DK
Sbjct: 110 KKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADK 166
Score = 120 (47.3 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIV 63
+N K+F+GG+ D +E+ L+ +F +G+V + D+ T R F F+VF + A+
Sbjct: 108 ENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
Query: 64 I-QEKHNIDGRMVEAKKAVPR 83
Q K R + KKAVP+
Sbjct: 168 SSQTKQTFGTRECDVKKAVPQ 188
Score = 114 (45.2 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
+KIFVGG++ V D +F Q+G + V YD R RGF F+ + + E
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGE 81
Score = 49 (22.3 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSS---SFAASNGGYD 395
YG+G +G + N G++ S SFA +N G+D
Sbjct: 240 YGNG--YYGQQGAAHHNNSGSSQGYGSGYQSFAGNNSGFD 277
Score = 43 (20.2 bits), Expect = 4.1e-21, Sum P(3) = 4.1e-21
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGG 393
GYGSG SF G N G Q+ N G
Sbjct: 261 GYGSGYQSFA------GNNSGFDYQQAQGARQGNNG 290
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 223 (83.6 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 56/166 (33%), Positives = 91/166 (54%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIG +S++T ++ L+E+ + + + V+M+D R+ GFGFV ++ V E+ +
Sbjct: 25 KLFIGYLSFETTDDSLREHSEKW-TLTDCVVMRDPLFERSSGFGFVTYS--CVEEVDAAM 81
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+V +AV R+D + +KIFVGG+ E + K
Sbjct: 82 CARPHKVDGRVV-GPRAVSREDSV----------KPGTHLTVKKIFVGGVREDREEYNLK 130
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK 169
YF+++G I + VM D + + RGF F+T+D + VDK+ AV K
Sbjct: 131 DYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDKI--AVQK 174
Score = 168 (64.2 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GG+ D E LK+YF YG++ +M+DR +G+ RGF FV F D V +I +Q
Sbjct: 114 KIFVGGVREDREEYNLKDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDKIAVQ 173
Query: 66 EKHNIDGRMVEAKKAVPR 83
+ H I+G E KK + +
Sbjct: 174 KYHTINGHNCEMKKVLSK 191
Score = 112 (44.5 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+G L+ T+ +++ +++ T+TD VVM D +R GFGF+TY E VD A
Sbjct: 25 KLFIGYLSFETTDDSLREHSEKW-TLTDCVVMRDPLFERSSGFGFVTYSCVEEVDAAMCA 83
Query: 167 VPKEL 171
P ++
Sbjct: 84 RPHKV 88
Score = 47 (21.6 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 358 GYGSGDNSFGLGAGGYGRNPG 378
GYGSG + GGYG G
Sbjct: 241 GYGSGGLGYVNQGGGYGGGGG 261
>UNIPROTKB|F1M4M4 [details] [associations]
symbol:F1M4M4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00558004
Ensembl:ENSRNOT00000049169 Uniprot:F1M4M4
Length = 255
Score = 218 (81.8 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 50/158 (31%), Positives = 82/158 (51%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S+ T EE L+ +F + ++ V+M+D NT R+RG GF + + +
Sbjct: 20 KLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMNA 79
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +DGR+V R+D R T KIF+ G+ E + Y
Sbjct: 80 RPHKVDGRVVS------REDS---QRPGAHL--------TVKIFISGIKEDTEEHHLRDY 122
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+ I + +M D +++ R F F+T+D ++VDK+
Sbjct: 123 FEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKI 160
Score = 147 (56.8 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+FI GI DT E L++YF Y ++ IM DR + + R F FV F + +V +I IQ
Sbjct: 104 KIFISGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQ 163
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 164 KYHTVNGHNCEVRKALSKQE 183
Score = 145 (56.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + +F+Q+ T+ VVM D NT+R RG GF TY + E +D
Sbjct: 19 RKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMN 78
Query: 166 AVPKEL 171
A P ++
Sbjct: 79 ARPHKV 84
Score = 51 (23.0 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG GSG N FG G G Y + G QSS+F G G
Sbjct: 209 FGGGSGSN-FGDG-GSYN-DFGNYNNQSSNFRPMKGANFG 245
Score = 39 (18.8 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSF 387
GSG+ + G G +G G+ S+
Sbjct: 196 GSGNYNNGGDRGSFGGGSGSNFGDGGSY 223
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 200 (75.5 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 36/86 (41%), Positives = 61/86 (70%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEI 62
+ GK+F+G +SW ++ LK YF+ +GEV++ I D NTGR+RGFGFV+ D A V +I
Sbjct: 70 EEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKI 129
Query: 63 VIQEKHNIDGRMVEAKKA-VPRDDQI 87
+ Q++H ++G +++ +KA V ++D +
Sbjct: 130 LDQKEHRLNGDVIDPEKAKVMKNDPV 155
Score = 123 (48.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
K+FVG L+ + + D K YF +FG + D + D NT R RGFGF+ +V+K+
Sbjct: 73 KMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKI 129
Score = 88 (36.0 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
+KIFVG L TE + + F +FG I + + D + + RGF FIT+ EE + VK+
Sbjct: 156 KKIFVG-LNPEATEKN--RDFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEE--EPVKK 210
Query: 166 AVPKE 170
+ K+
Sbjct: 211 VLEKK 215
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 228 (85.3 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
Identities = 52/158 (32%), Positives = 82/158 (51%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T E L+ +F G + + V M+D NT +RGFGFV +A +
Sbjct: 29 KLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVDAATNA 88
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +D R+VE K+AV R+D R + + E + Y
Sbjct: 89 RPHKVD-RVVEPKRAVSREDS---QRPGAHLTMKKKEEEEEEED----DNNTEEYHLRDY 140
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 141 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 178
Score = 152 (58.6 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
+K+F+GGL+ T + +F+Q G +TD V M D NT+ RGFGF+TY + E VD
Sbjct: 28 QKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVDAATN 87
Query: 166 AVPKEL 171
A P ++
Sbjct: 88 ARPHKV 93
Score = 148 (57.2 bits), Expect = 8.1e-09, Sum P(3) = 8.1e-09
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 16 DTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQEKHNIDGRM 74
+T E L++YF YG++ IM DR +G+ RGF FV F D +V +IVIQ+ H ++G
Sbjct: 131 NTEEYHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 190
Query: 75 VEAKKAVPRDD 85
E +KA+ + +
Sbjct: 191 CEVRKALSKQE 201
Score = 54 (24.1 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 20/47 (42%), Positives = 22/47 (46%)
Query: 358 GYG-SGD--NSFG-----LGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG SGD N FG G GG + G QSS+F GG G
Sbjct: 252 GYGGSGDGYNRFGNDGSNFGGGGSCNDFGNYNNQSSNFGPIKGGNFG 298
Score = 47 (21.6 bits), Expect = 9.9e-20, Sum P(2) = 9.9e-20
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 363 DNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
+ +FG G GG G +F+ GG+DG
Sbjct: 215 ERNFG-GGGGGGVGGNDNFGSGGNFSGQ-GGFDG 246
Score = 41 (19.5 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 248 GANANFNSNLSY-GRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWGN 301
G N NF S ++ G+G G GS GY+ ++F + N +GN
Sbjct: 227 GGNDNFGSGGNFSGQGGFDGSRGGGGYGGSGDGYNRFGNDGSNFGGGGSCNDFGN 281
Score = 39 (18.8 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG G N G +G YG G A+ + GGY G
Sbjct: 289 FGPIKGGNFGGTSSGPYGGG-GQYFAKPRN----QGGYGG 323
Score = 39 (18.8 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
G G DN FG G G+ + S GY+
Sbjct: 225 GVGGNDN-FGSGGNFSGQGGFDGSRGGGGYGGSGDGYN 261
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 209 (78.6 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 43/127 (33%), Positives = 71/127 (55%)
Query: 38 MKDRNTGRARGFGFVVFADPAVAEIVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXX 96
M+D + R+RGFGFV F+ A + + + H+IDGR+VE K+AV R++
Sbjct: 1 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES---------- 50
Query: 97 XXXXXXXRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
+K+FVGG+ E + YF+++G I + ++ D + + RGFGF+T+D
Sbjct: 51 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 110
Query: 157 EEAVDKV 163
+ VDK+
Sbjct: 111 HDPVDKI 117
Score = 189 (71.6 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 61 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 120
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 121 KYHTINGHNAEVRKALSRQE 140
Score = 79 (32.9 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGT-TLAQSSSFAASNGGYDG 396
GYGSG FG G GYG PG S + GGY G
Sbjct: 181 GYGSG-RGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGG 219
Score = 57 (25.1 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GYG G +G G GYG G ++ N G G + D
Sbjct: 209 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYG-SGNYND 250
Score = 51 (23.0 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY-DG 396
+G GD S G G G +G PG+ S S G+ DG
Sbjct: 155 FGFGD-SRG-GGGNFGPGPGSNFRGGSDGYGSGRGFGDG 191
Score = 47 (21.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 181 GGYHYGLSRVNSFLNGYTQ---GYTPSTVGGYG 210
GG +YG N F N Y Q Y P G +G
Sbjct: 239 GGGNYGSGNYNDFGN-YNQQPSNYGPMKSGNFG 270
Score = 42 (19.8 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 252 NFNSNLSYGRGLSPYYIGNPNRYGSPLG 279
NF + YG G Y G P YG+ G
Sbjct: 203 NFGGSPGYGGGRGGYGGGGPG-YGNQGG 229
Score = 39 (18.8 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGY 280
G N FG + N +G G + G + YGS G+
Sbjct: 152 GGNFGFGDSRGGGGN--FGPGPGSNFRGGSDGYGSGRGF 188
Score = 37 (18.1 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
GGY G + GY GY G YG
Sbjct: 215 GGYGGGGPGYGNQGGGYGGGYDNYGGGNYG 244
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 195 (73.7 bits), Expect = 1.8e-20, Sum P(3) = 1.8e-20
Identities = 33/82 (40%), Positives = 59/82 (71%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M S+ GKLF+GG++++T+E+ L+++FS++G + E V++KDR T R+RGFGF+ F +P A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 EIVIQEKH--NIDGRMVEAKKA 80
+ ++ + ++DGR + A
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHA 82
Score = 144 (55.7 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 44/120 (36%), Positives = 54/120 (45%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL E + +F FG I++VVV+ D TQR RGFGFIT+ + E RA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 167 VPKELSPG----------PTRSPLGGYHYGLSRVNSFLNG-----YTQG-YTPSTVGGYG 210
+ E G R GG R S+ G Y G Y S GGYG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYG 126
Score = 51 (23.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 181 GGYHYGLSRVNSFLNGYTQG-YTPSTVGGY 209
GGY YG R + NG QG Y + G Y
Sbjct: 123 GGYGYGYGRSRDY-NGRNQGGYDRYSGGNY 151
Score = 44 (20.5 bits), Expect = 1.8e-20, Sum P(3) = 1.8e-20
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPG 378
+GYG + G GGY R G
Sbjct: 127 YGYGRSRDYNGRNQGGYDRYSG 148
Score = 37 (18.1 bits), Expect = 1.8e-20, Sum P(3) = 1.8e-20
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 258 SYGRGLSPYYIGNPNRYGSPLGYD 281
++GRG S G YGS YD
Sbjct: 96 AHGRGRSYSRGGGDQGYGSGRYYD 119
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 205 (77.2 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 39/80 (48%), Positives = 56/80 (70%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI 62
SD GKLFIGG+++DTNEE L++ FS YG++ E V++KDR T R+RGFGFV F +P A+
Sbjct: 2 SDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKD 61
Query: 63 VIQEKHN--IDGRMVEAKKA 80
+ + +DGR + +A
Sbjct: 62 AMMAMNGKAVDGRQIRVDQA 81
Score = 131 (51.2 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 36/111 (32%), Positives = 55/111 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVKR 165
K+F+GGL E ++ F ++G I++VVV+ D T+R RGFGF+T+++ ++A D +
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 166 AVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
K + R G G R G GY + GG G GR
Sbjct: 66 MNGKAVDGRQIRVDQAGKSSGDRR------G---GYRGGSSGGRGFFRGGR 107
Score = 57 (25.1 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 16/40 (40%), Positives = 17/40 (42%)
Query: 358 GY-GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GY G G GG GR G SS F +GGY G
Sbjct: 91 GYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDNRSGGYGG 130
Score = 48 (22.0 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
GYGS + F +GGYG + G+ SS S G Y
Sbjct: 115 GYGS--SRFDNRSGGYGGSSGSRDYYSSG--RSQGSY 147
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 217 (81.4 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 61/206 (29%), Positives = 101/206 (49%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KL IGG+ + T E L+ +F +G + V+M+D NT R+R GFV + + +
Sbjct: 24 KLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAAMNA 83
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ +DGR+V+ K+AV R+D R +KIF GG+ E + + Y
Sbjct: 84 RPQKMDGRLVKPKRAVSREDS---QRPGTQLT-------VKKIFEGGIKEDTEEHNVRDY 133
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK-ELSPGPTRSPLGGYH 184
F+ +G I + +M D ++ + + F + D ++VDK+ A+ K G T GG
Sbjct: 134 FEHYGKIDMIEIMTDRSSGK-KEFALVPLDDHDSVDKI--AIQKYHTVNGTTVKNFGG-G 189
Query: 185 YGLSRVNSFLNGYTQGYTPSTVGGYG 210
G S + + + QG S+ GG+G
Sbjct: 190 CGCSFGGN--DNFGQGGNFSSHGGFG 213
Score = 42 (19.8 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 242 GLNPSFGANANFNSNLSYG 260
G N +FG NF+S+ +G
Sbjct: 195 GGNDNFGQGGNFSSHGGFG 213
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 56/160 (35%), Positives = 89/160 (55%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
+LFIGG+S++T E+ L+E F G + + V+M+D + FGFV ++ V E+ +
Sbjct: 8 RLFIGGLSFETIEDSLREGFEM-GTLADCVVMRD-----PQSFGFVTYS--CVEEVDAAM 59
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H +DGR+VE K+AV R+D + T KIFVGG+ E + +
Sbjct: 60 CARPHKVDGRVVEPKRAVSREDSV-----------KPGAHLTVKIFVGGIKEDAEEYNLR 108
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 109 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 148
Score = 167 (63.8 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GGI D E L++YF YG++ +M+DR +G+ RGF FV F D + ++
Sbjct: 92 KIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVN 151
Query: 67 KHNIDGRMVEAKKAVPRDD 85
H I+G E +KA+ + +
Sbjct: 152 YHTINGHNCEVRKALSKQE 170
Score = 109 (43.4 bits), Expect = 0.00051, P = 0.00051
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
R++F+GGL+ E ++ F+ GT+ D VVM D P+ FGF+TY E VD
Sbjct: 7 RRLFIGGLSFETIEDSLREGFEM-GTLADCVVMRD-----PQSFGFVTYSCVEEVDAAMC 60
Query: 166 AVPKEL 171
A P ++
Sbjct: 61 ARPHKV 66
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 50/145 (34%), Positives = 84/145 (57%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
Q + K+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A +KIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQR 145
++YF FG + + + D+ T +
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNK 221
Score = 144 (55.7 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 31/93 (33%), Positives = 46/93 (49%)
Query: 71 DGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYFDQFG 130
+G ++A K +D+ N K+F+GGL+ T+ D K YF +FG
Sbjct: 64 EGAKIDASKN--EEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFG 121
Query: 131 TITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+ D + D T R RGFGF+ + E+VDKV
Sbjct: 122 EVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 207 (77.9 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 143 (55.4 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSSGGRGFFRGGR 108
Score = 52 (23.4 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G SG F G G G G+ R G S F + +GGY G
Sbjct: 95 GGSSGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFESRSGGYGG 137
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 204 (76.9 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
Identities = 52/160 (32%), Positives = 81/160 (50%)
Query: 7 KLFIGGISWDTNEERLK--EYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVI 64
KLF+GG+S++ E L +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAAM 74
Query: 65 QEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
+ H + GR VE K+A +D Q +KIFVGG+ E +
Sbjct: 75 NARPHKVGGRAVEPKRAGSKDSQ-----------RPGAHLTMKKIFVGGVKEDTEEHRLR 123
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
Y +Q G T+V + R F F+T+D+ +VDK+
Sbjct: 124 DYLEQNGK-TEVTEITTDRGSGKRDFAFVTFDN--SVDKI 160
Score = 157 (60.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 34/68 (50%), Positives = 46/68 (67%)
Query: 106 RKIFVGGLASTVT-ES-DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+K+FVGGL+ T ES +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 QKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAA 73
Query: 164 KRAVPKEL 171
A P ++
Sbjct: 74 MNARPHKV 81
Score = 142 (55.0 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+ DT E RL++Y G+ I DR +G+ R F FV F D +V +IVIQ+
Sbjct: 107 KIFVGGVKEDTEEHRLRDYLEQNGKTEVTEITTDRGSGK-RDFAFVTF-DNSVDKIVIQK 164
Query: 67 KHNIDGRMVEAKKAVPRDD 85
++G E +KA+ + +
Sbjct: 165 YSTVNGHNCEVRKALSKQE 183
Score = 60 (26.2 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 357 FGY-GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FGY G G++ G GG + G QSS+F GG G
Sbjct: 200 FGYKGFGNDRSNFGGGGSYNDFGNYNIQSSNFGPMKGGNFG 240
Score = 40 (19.1 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 179 PLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
P+ G ++G ++ G P GGYG
Sbjct: 233 PMKGGNFGGGGSGPYVGGGQDFAKPRNQGGYG 264
Score = 40 (19.1 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGYDG 396
FG Y ++FG GG G G + FA + GGY G
Sbjct: 221 FGNYNIQSSNFGPMKGGNFGGGGSGPYVGGGQDFAKPRNQGGYGG 265
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 207 (77.9 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 145 (56.1 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
Score = 50 (22.7 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 360 GSGDNSFGLGAGGYG--RNPGTTLAQSSSFA-ASNGG 393
G G N F +GGYG R+ ++ +QS ++ S+GG
Sbjct: 122 GYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGG 158
Score = 46 (21.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G +G F G G G G+ R G + F + +GGY G
Sbjct: 95 GGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGG 137
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 207 (77.9 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 145 (56.1 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
Score = 50 (22.7 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 360 GSGDNSFGLGAGGYG--RNPGTTLAQSSSFA-ASNGG 393
G G N F +GGYG R+ ++ +QS ++ S+GG
Sbjct: 122 GYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGG 158
Score = 46 (21.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G +G F G G G G+ R G + F + +GGY G
Sbjct: 95 GGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGG 137
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 207 (77.9 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 145 (56.1 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
Score = 50 (22.7 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 360 GSGDNSFGLGAGGYG--RNPGTTLAQSSSFA-ASNGG 393
G G N F +GGYG R+ ++ +QS ++ S+GG
Sbjct: 122 GYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGG 158
Score = 46 (21.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G +G F G G G G+ R G + F + +GGY G
Sbjct: 95 GGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGG 137
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 207 (77.9 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 145 (56.1 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
Score = 50 (22.7 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 360 GSGDNSFGLGAGGYG--RNPGTTLAQSSSFA-ASNGG 393
G G N F +GGYG R+ ++ +QS ++ S+GG
Sbjct: 122 GYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGG 158
Score = 46 (21.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G +G F G G G G+ R G + F + +GGY G
Sbjct: 95 GGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGG 137
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 207 (77.9 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 145 (56.1 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
Score = 50 (22.7 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 360 GSGDNSFGLGAGGYG--RNPGTTLAQSSSFA-ASNGG 393
G G N F +GGYG R+ ++ +QS ++ S+GG
Sbjct: 122 GYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGG 158
Score = 46 (21.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G +G F G G G G+ R G + F + +GGY G
Sbjct: 95 GGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGG 137
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 207 (77.9 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 143 (55.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
Score = 50 (22.7 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 357 FGYGSGDNSFGLG-----AGGYG--RNPGTTLAQSSSFA-ASNGG 393
F G GD +G G +GGYG R+ + +Q S+ S+GG
Sbjct: 114 FSRGGGDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGYRSSGG 158
Score = 39 (18.8 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+ G S G G + R G F + +GGY G
Sbjct: 102 GFFRGGRSRGRG---FSRGGGDRGYGGGRFESRSGGYGG 137
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 207 (77.9 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 143 (55.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
Score = 50 (22.7 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 357 FGYGSGDNSFGLG-----AGGYG--RNPGTTLAQSSSFA-ASNGG 393
F G GD +G G +GGYG R+ + +Q S+ S+GG
Sbjct: 114 FSRGGGDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGYRSSGG 158
Score = 39 (18.8 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+ G S G G + R G F + +GGY G
Sbjct: 102 GFFRGGRSRGRG---FSRGGGDRGYGGGRFESRSGGYGG 137
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 207 (77.9 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 143 (55.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
Score = 50 (22.7 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 357 FGYGSGDNSFGLG-----AGGYG--RNPGTTLAQSSSFA-ASNGG 393
F G GD +G G +GGYG R+ + +Q S+ S+GG
Sbjct: 114 FSRGGGDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGYRSSGG 158
Score = 39 (18.8 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+ G S G G + R G F + +GGY G
Sbjct: 102 GFFRGGRSRGRG---FSRGGGDRGYGGGRFESRSGGYGG 137
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 212 (79.7 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 65/216 (30%), Positives = 102/216 (47%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ + S + +M D NT +RGF FV +A + +
Sbjct: 14 KLFIGGLSFETTDESLRSHCSHS----PSCVMTDPNTKCSRGFRFVTYATVEEVDAAMNA 69
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +D R+VE K+ V R+ R +KIF GG+ E + Y
Sbjct: 70 RPHKVDRRVVEPKRGVSREGS---QRPGAHLT-------VKKIFAGGIKEDTEERHLRDY 119
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK-VKRAVPKELSPGPTRSPLGGYH 184
F++ G I + +M D ++ + RGF F+T+D ++VDK V + R G +
Sbjct: 120 FEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNRERGRSGSGN 179
Query: 185 YGLSRVNSFLNGYTQ-GYTPSTVGGYGLRMD-GRFS 218
+G R +GY G S GG G D G ++
Sbjct: 180 FGGGRGGG--DGYNGFGNDGSNFGGGGSYSDFGNYN 213
Score = 44 (20.5 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNG 392
G+G+ ++FG G G Y + G +SS+F G
Sbjct: 192 GFGNDGSNFG-GGGSYS-DFGNYNNRSSNFGPVKG 224
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 207 (77.9 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 145 (56.1 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
Score = 49 (22.3 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G +G F G G G G+ R G S F + +GGY G
Sbjct: 95 GGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFESRSGGYGG 137
Score = 48 (22.0 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 357 FGYGSGDNSFGLG-----AGGYG--RNPGTTLAQSSSFAASNGG 393
F G GD +G +GGYG R+ ++ +Q + S+GG
Sbjct: 114 FSRGGGDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYDRSSGG 157
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 207 (77.9 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
Score = 49 (22.3 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G +G F G G G G+ R G S F + +GGY G
Sbjct: 95 GGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFESRSGGYGG 137
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 207 (77.9 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
Score = 49 (22.3 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G +G F G G G G+ R G S F + +GGY G
Sbjct: 95 GGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFESRSGGYGG 137
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 206 (77.6 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 39/82 (47%), Positives = 56/82 (68%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKA 80
++ ++DGR + +A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
Score = 156 (60.0 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 42/117 (35%), Positives = 63/117 (53%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVKR 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 AVPKELSPGPTR-SPLGGYH--YGLSRVNSFLNGY--TQGY--TPSTVGGYGLRMDG 215
K + R GG YG +R S GY ++ Y + S GGY R G
Sbjct: 67 MNGKSVDGRQIRVDQAGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSG 123
Score = 50 (22.7 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 360 GSGDNSFGLGAGGYG--RNPGTTLAQSSSFA-ASNGG 393
G G N F +GGYG R+ ++ +QS ++ S+GG
Sbjct: 88 GYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGG 124
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 68/210 (32%), Positives = 96/210 (45%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVI 64
GKLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 65 QEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXX-XXXRTRKIF--VGGLASTVTESD 121
H +DGR + PR D N+ R+ F G + V D
Sbjct: 70 SRPHTLDGRNQKG----PRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 125
Query: 122 FKKYFDQ-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPL 180
+K + FG IT ++ + +D +VKRA P++ P
Sbjct: 126 AEKQRPRGFGFIT-----FEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQP- 179
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
G +G V + NG+ P+ GYG
Sbjct: 180 GASQWGSRVVPNAANGWAGQPPPTWQQGYG 209
Score = 175 (66.7 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E L+EYF +G V E V++ D R RGFGF+ F D +V +
Sbjct: 88 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 147
Query: 62 IVIQEKHNIDGRMVEAKKAVPRDDQ 86
V H+I G+ VE K+A PRD +
Sbjct: 148 AVNMHFHDIMGKKVEVKRAEPRDSK 172
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 208 (78.3 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 46/130 (35%), Positives = 70/130 (53%)
Query: 8 LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK 67
L + G+ W T E+ LKEYFST+GEV+ + KD TG ++GFGFV F + V+ ++
Sbjct: 39 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQR 98
Query: 68 HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYFD 127
H IDGR + K +P Q R+RK+FVG +T + +++F
Sbjct: 99 HMIDGRWCDCK--LPNSKQ-----------SPDEPLRSRKVFVGRCTEDMTADELQQFFC 145
Query: 128 QFGTITDVVV 137
Q+G + DV +
Sbjct: 146 QYGEVVDVFI 155
Score = 108 (43.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+G + D + L+++F YGEVV+ I K R F FV FAD VA+ + E
Sbjct: 125 KVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDQVAQSLCGE 179
Query: 67 KHNIDGRMVEAKKAVPR 83
I G V A P+
Sbjct: 180 DLIIKGISVHISNAEPK 196
Score = 47 (21.6 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 357 FGYGSG-DNSFGLGAGGYGRNPGTTLAQSSSFAA 389
FG G NS G GAG G N G+ + +F A
Sbjct: 216 FGNQGGFGNSRGGGAG-LGNNQGSNMGGGMNFGA 248
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 193 (73.0 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 34/82 (41%), Positives = 59/82 (71%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M S+ GKLF+GG++++T+E+ L+++FS++G + E V++KDR T R+RGFGF+ F +P A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 EIVIQEKH--NIDGRMVEAKKA 80
V++ + ++DGR + A
Sbjct: 61 SDVMRAMNGESLDGRQIRVDHA 82
Score = 150 (57.9 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 44/119 (36%), Positives = 54/119 (45%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL E + +F FG I++VVV+ D TQR RGFGFIT+ + E V RA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 167 VPKELSPG----------PTRSPLGGYHYGLSRVNSFLNG-----YTQGYTPSTVGGYG 210
+ E G R GG R S+ G Y G S GGYG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYGSGRYDSRPGGYG 125
Score = 62 (26.9 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
GYGSG + GGYG G +S ++ S GGYD
Sbjct: 111 GYGSG--RYDSRPGGYGYGYG----RSRDYSGSQGGYD 142
Score = 42 (19.8 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPS-----TVGGYGLRMDGRF 217
G YG R +S GY GY S + GGY G +
Sbjct: 108 GDQGYGSGRYDSRPGGYGYGYGRSRDYSGSQGGYDRYSGGNY 149
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 210 (79.0 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 51/159 (32%), Positives = 82/159 (51%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S+ T EE L+ +F + ++ V+M+D NT R+RG GF + + +
Sbjct: 16 KLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMNA 75
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIF-VGGLASTVTESDFKK 124
+ H +DGR+V R+D R T KIF V G+ E +
Sbjct: 76 RPHKVDGRVVS------REDS---QRPGAHL--------TVKIFIVSGIKEDTEEHHLRD 118
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+Q+ I + +M D +++ R F F+T+D ++VDK+
Sbjct: 119 YFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKI 157
Score = 145 (56.1 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + +F+Q+ T+ VVM D NT+R RG GF TY + E +D
Sbjct: 15 RKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMN 74
Query: 166 AVPKEL 171
A P ++
Sbjct: 75 ARPHKV 80
Score = 138 (53.6 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 7 KLFI-GGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVI 64
K+FI GI DT E L++YF Y ++ IM DR + + R F FV F + +V +I I
Sbjct: 100 KIFIVSGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFI 159
Query: 65 QEKHNIDGRMVEAKKAVPRDD 85
Q+ H ++G E +KA+ + +
Sbjct: 160 QKYHTVNGHNCEVRKALSKQE 180
Score = 51 (23.0 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
FG GSG N FG G G Y + G QSS+F G G
Sbjct: 242 FGGGSGSN-FGDG-GSYN-DFGNYNNQSSNFRPMKGANFG 278
Score = 51 (23.0 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAA-SNGGYDGVF 398
GY G G G YG G S S+ + +NGG G F
Sbjct: 203 GYSGGSRVCGSGGQDYGNGSG--YGGSGSYDSYNNGGDRGSF 242
Score = 42 (19.8 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGV-FAD 400
GSG +G G+G YG + + S GG G F D
Sbjct: 212 GSGGQDYGNGSG-YGGSGSYDSYNNGGDRGSFGGGSGSNFGD 252
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 218 (81.8 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 50/157 (31%), Positives = 83/157 (52%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFI G+S++ +E L+ +F +G + + V+M+D NT +RGFG + D A+
Sbjct: 15 KLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAMEEVDAAMNS----R 70
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
+ R++E K+AV ++D +KIFVGG+ E + YF
Sbjct: 71 PCKVGRRVLEPKRAVSQEDS----------PRPGVLLTVKKIFVGGIKEDTEEHHLRDYF 120
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+Q+G I + M D + + RGF F+T+D ++VDK+
Sbjct: 121 EQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKI 157
Score = 157 (60.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYG--EVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIV 63
K+F+GGI DT E L++YF YG EV+E+ M DR +G+ RGF FV F D +V +IV
Sbjct: 101 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIES--MTDRGSGKKRGFAFVTFDDHDSVDKIV 158
Query: 64 IQEKHNIDGRMVEAKKAV 81
IQ+ H +G +K +
Sbjct: 159 IQKYHAANGHNRVVRKTL 176
Score = 123 (48.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD---- 161
+K+F+ GL+ +T+ + +F+Q+GT+TD VVM D NT+ RGFG + + + A++
Sbjct: 14 QKLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAME-EVDAAMNSRPC 72
Query: 162 KV-------KRAVPKELSPGP 175
KV KRAV +E SP P
Sbjct: 73 KVGRRVLEPKRAVSQEDSPRP 93
Score = 122 (48.0 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 52/185 (28%), Positives = 70/185 (37%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV-- 163
+KIFVGG+ E + YF+Q+G I + M D + + RGF F+T+D ++VDK+
Sbjct: 100 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVI 159
Query: 164 ---------KRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMD 214
R V K L S G S +F G G+ + G G
Sbjct: 160 QKYHAANGHNRVVRKTLWKQEMASASSSQR-GRSGSGNFGGGCGGGFGGNDNFGRG---- 214
Query: 215 GRFSPVAXXXXXXXXXXXXXXXXXIEPGLNPSFGANANFNSNLSYGRGLSPYYIGNPNRY 274
G FS G N FG N SN GR + + GN N
Sbjct: 215 GNFSGQGGFAGSRGGGGSGGSGD----GYN-EFG---NDGSNFGGGRSYNDF--GNYNNQ 264
Query: 275 GSPLG 279
S G
Sbjct: 265 SSNFG 269
Score = 54 (24.1 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 361 SGDNSFGLGAGG-YGRNP----GTTLAQSSSFAASNGG 393
SG +FG G GG +G N G + FA S GG
Sbjct: 192 SGSGNFGGGCGGGFGGNDNFGRGGNFSGQGGFAGSRGG 229
Score = 51 (23.0 bits), Expect = 6.0e-19, Sum P(2) = 6.0e-19
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 358 GYGSGDNSFGL-GA---GGYGRNP-GTTLAQSSSFAASNGGYDG 396
G G G N FG G+ GG N G QSS+F GG+ G
Sbjct: 234 GSGDGYNEFGNDGSNFGGGRSYNDFGNYNNQSSNFGPMKGGHFG 277
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 189 (71.6 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 33/82 (40%), Positives = 57/82 (69%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M S+ GKLF+GG++++T+E+ L+++F ++G + E V++KDR T R+RGFGF+ F DP A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHA 60
Query: 61 EIVIQEKH--NIDGRMVEAKKA 80
++ + ++DGR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
Score = 144 (55.7 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 43/119 (36%), Positives = 56/119 (47%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVK- 164
K+FVGGL E + +F FG I++VVV+ D TQR RGFGFIT+ D E A D ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 165 --------RAVPKELSPGPTRSPLGGYHYGLSRVNSFLNG-----YTQGYTPSTVGGYG 210
R + + + R GG R S+ G Y G S GGYG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYGSGRYDSRPGGYG 125
Score = 63 (27.2 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAA-SNGGYD 395
GYGSG G GYG G +S + S GGYD
Sbjct: 111 GYGSGRYDSRPGGYGYGYGYGYGYGRSRDYGGRSQGGYD 149
Score = 44 (20.5 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPG 378
+GYG + G GGY R G
Sbjct: 132 YGYGRSRDYGGRSQGGYDRYSG 153
Score = 42 (19.8 bits), Expect = 5.4e-17, Sum P(2) = 5.4e-17
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMD 214
G YG R +S GY GY GYG D
Sbjct: 108 GDQGYGSGRYDSRPGGYGYGYGYGY--GYGRSRD 139
Score = 40 (19.1 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 182 GYHYGLSRVNSFLNGYTQG-YTPSTVGGY 209
GY YG R + G +QG Y + G Y
Sbjct: 129 GYGYGYGRSRDY-GGRSQGGYDRYSGGNY 156
Score = 38 (18.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 182 GYHYGL--SRVNSFLNGYTQGYTPSTVGGYGLRMDGRF 217
GY G SR + GY GY YG R G +
Sbjct: 111 GYGSGRYDSRPGGYGYGYGYGYGYGRSRDYGGRSQGGY 148
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 204 (76.9 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 50/160 (31%), Positives = 83/160 (51%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + D R+RGFGF+ ++ V E+ V
Sbjct: 33 KLFIGGLSFETTDDSLREHFEKWGTLT------DCGNKRSRGFGFLTYS--CVEEVDAAV 84
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFK 123
H R+V K+AV R+D + +K++VGG+ E + +
Sbjct: 85 CARPHKAAVRVV-GKRAVSREDSV----------KPGAHLMVKKLYVGGIKEDTEEYNLR 133
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF ++G I + VM + + RGF F+T+D + VDK+
Sbjct: 134 GYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKI 173
Score = 160 (61.4 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KL++GGI DT E L+ YF YG++ +M+ R +G+ RGF FV F D + ++Q+
Sbjct: 117 KLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQK 176
Query: 67 KHNIDGRMVEAKKAVPRDDQ 86
H I+G E K + ++ Q
Sbjct: 177 HHAINGNNCEVGKVLSKEMQ 196
Score = 122 (48.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ +++F+++GT+TD +R RGFGF+TY E VD
Sbjct: 32 RKLFIGGLSFETTDDSLREHFEKWGTLTDC------GNKRSRGFGFLTYSCVEEVDAAVC 85
Query: 166 AVP 168
A P
Sbjct: 86 ARP 88
Score = 46 (21.3 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFADL 401
G+ N G G GRN G S G Y+ V ++
Sbjct: 206 GASGNFMGRGGNFGGRNFGGRGGYGGGGGGSRGSYEVVMVEI 247
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 209 (78.6 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 52/142 (36%), Positives = 75/142 (52%)
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVT 118
V +++ Q +H +D + ++ K A PR Q + RT+KIFVGGL+ T
Sbjct: 6 VDKVLAQSRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTT 53
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV----------KRAVP 168
D K+YF+QFG + D ++M+D T R RGFGF+T++SE+ V+KV K
Sbjct: 54 VEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 113
Query: 169 KELSPGPTRSPLGGYHYGLSRV 190
K+ P SP G G SRV
Sbjct: 114 KKAQPKEVMSPTGSAR-GRSRV 134
Score = 181 (68.8 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQ- 65
K+F+GG+S +T E +K+YF +G+V +A++M D+ T R RGFGFV F + E V +
Sbjct: 42 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 101
Query: 66 EKHNIDGRMVEAKKAVPRD 84
H I+ +MVE KKA P++
Sbjct: 102 HFHEINNKMVECKKAQPKE 120
Score = 40 (19.1 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
YG G+G GY TT A S S+ GY
Sbjct: 137 YGMDAFMLGIGMLGYPGFQATTYA-SRSYTGLAPGY 171
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 189 (71.6 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 33/82 (40%), Positives = 58/82 (70%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M S+ GKLF+GG++++T+E+ L+++FS++G + E V++KDR T R+RGFGF+ F +P A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 EIVIQEKH--NIDGRMVEAKKA 80
++ + ++DGR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
Score = 148 (57.2 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 44/117 (37%), Positives = 53/117 (45%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL E + +F FG I++VVV+ D TQR RGFGFIT+ + E RA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 167 VPKELSPG----------PTRSPLGGYHYGLSRVNSFLNG---YTQGYTPSTVGGYG 210
+ E G R GG G R S G Y G S GGYG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRGGAFGGRGRSYSRGGGDQGYGSGRYDSRPGGYG 123
Score = 62 (26.9 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
GYGSG + GGYG G +S ++ S GGYD
Sbjct: 109 GYGSG--RYDSRPGGYGYGYG----RSRDYSGSQGGYD 140
Score = 42 (19.8 bits), Expect = 5.4e-17, Sum P(2) = 5.4e-17
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPS-----TVGGYGLRMDGRF 217
G YG R +S GY GY S + GGY G +
Sbjct: 106 GDQGYGSGRYDSRPGGYGYGYGRSRDYSGSQGGYDRYSGGNY 147
Score = 40 (19.1 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 360 GSGDNSFGLGAG-GYGRNPGTTLAQSSSFAASNGGY 394
GS +FG G G Y R G S + + GGY
Sbjct: 88 GSRGGAFG-GRGRSYSRGGGDQGYGSGRYDSRPGGY 122
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 205 (77.2 bits), Expect = 5.5e-19, Sum P(2) = 5.5e-19
Identities = 45/127 (35%), Positives = 71/127 (55%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++ +E L+ +F +G + +V+M+D NT R+ GFGFV +A + + E
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +D R++E K+AV R+D R +KIFVG + E + Y
Sbjct: 61 RPHKVDERVLEPKRAVSREDS---ERTGTHLT-------VKKIFVGVVKEDTEEHHLRDY 110
Query: 126 FDQFGTI 132
F+Q+G I
Sbjct: 111 FEQYGKI 117
Score = 150 (57.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+GGL+ T+ + +F+Q+GT+T+ VVM D NT+R GFGF+TY + E VD
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 167 VPKEL 171
P ++
Sbjct: 61 RPHKV 65
Score = 111 (44.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+G + DT E L++YF YG++ + + GF F F D +V +IVIQ
Sbjct: 92 KIFVGVVKEDTEEHHLRDYFEQYGKI--------QRQWKKEGFCFFTFDDHDSVDKIVIQ 143
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H + G E +K + + +
Sbjct: 144 KYHTVGGHTCEVRKPLSKQE 163
Score = 43 (20.2 bits), Expect = 5.5e-19, Sum P(2) = 5.5e-19
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 358 GYGSGDN---SFG--LGA--GGYGRNPGTTLAQSSSFAASNGGYDG 396
G+GS +N FG G GG G P Q + S GGY G
Sbjct: 181 GFGSYNNHSSKFGPMKGGNFGGGGSGPDGGRGQYFAKPRSQGGYGG 226
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 197 (74.4 bits), Expect = 6.5e-19, Sum P(3) = 6.5e-19
Identities = 43/136 (31%), Positives = 72/136 (52%)
Query: 29 YGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK-HNIDGRMVEAKKAVPRDDQI 87
+G + + V+M+D NT +RGF F+ +A + + + H +D R+VE KKAV R+D
Sbjct: 3 WGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDS- 61
Query: 88 VLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPR 147
R +KIFVGG+ + + YF+ +G I + +M D + R
Sbjct: 62 --QRPGAHLT-------VKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKR 112
Query: 148 GFGFITYDSEEAVDKV 163
F F+T+D+ ++VDK+
Sbjct: 113 SFAFVTFDAHDSVDKI 128
Score = 169 (64.5 bits), Expect = 5.7e-15, Sum P(3) = 5.7e-15
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVF-ADPAVAEIVIQ 65
K+F+GGI DT + L++YF YG++ IM DR +G R F FV F A +V +IVIQ
Sbjct: 72 KIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDAHDSVDKIVIQ 131
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 132 KYHTVNGHNCEVRKALLKQE 151
Score = 90 (36.7 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 128 QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKEL 171
++G +TD VVM D NT+ RGF F+TY + E VD P ++
Sbjct: 2 KWGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKV 45
Score = 69 (29.3 bits), Expect = 6.5e-19, Sum P(3) = 6.5e-19
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GY G +G G GYG N G+ S S+ + N G G
Sbjct: 213 GYSGGSRGYGSGGQGYG-NQGSGYGGSGSYDSYNNGGGG 250
Score = 57 (25.1 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 20/41 (48%), Positives = 21/41 (51%)
Query: 358 GYG--SGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYG SG N FG G Y N G QSS+F A GG G
Sbjct: 252 GYGGASGSN-FG-GGRSYN-NFGNYNNQSSNFGAMKGGNFG 289
Score = 53 (23.7 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 358 GYGSGDNSFGLGAGGY-GRNPGTTLAQSSSFAASNGGY 394
G G G N FG GGY G PG + S + + GY
Sbjct: 193 GSGDGCNGFG-NDGGYRGGGPGYS-GGSRGYGSGGQGY 228
Score = 48 (22.0 bits), Expect = 9.2e-17, Sum P(3) = 9.2e-17
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 358 GYG-SGD-NSF--GLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
GYG SG +S+ G G GGYG G+ S+ + G Y+
Sbjct: 234 GYGGSGSYDSYNNGGGGGGYGGASGSNFGGGRSYN-NFGNYN 274
Score = 47 (21.6 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 248 GANANFNSNLSYGRGLSPYYIGNPNRYGSPLGYDXXXXXXTSFFSSVTRNLWGNGG 303
G N F ++ Y RG P Y G YGS G + + S + + + NGG
Sbjct: 197 GCNG-FGNDGGY-RGGGPGYSGGSRGYGS--GGQGYGNQGSGYGGSGSYDSYNNGG 248
Score = 45 (20.9 bits), Expect = 6.5e-19, Sum P(3) = 6.5e-19
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 242 GLNPSFGANANFNSNLSYGRGLSPYYIGNPNRY--GSPLGY 280
G N +FG N + G G + + GN Y G P GY
Sbjct: 177 GGNENFGCGGNLSGQSGSGDGCNGF--GNDGGYRGGGP-GY 214
Score = 44 (20.5 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 357 FGYG---SGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
FG G SG + G G G+G N G ++ + GY
Sbjct: 182 FGCGGNLSGQSGSGDGCNGFG-NDGGYRGGGPGYSGGSRGY 221
Score = 43 (20.2 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 357 FG-YGSGDNSFGLGAGGY--GRNPGTTLAQSSSFAA--SNGGY 394
FG Y + ++FG GG GR+ G+ FA + GGY
Sbjct: 270 FGNYNNQSSNFGAMKGGNFGGRSSGSYGGGGQYFAKPQNQGGY 312
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 227 (85.0 bits), Expect = 8.4e-19, P = 8.4e-19
Identities = 49/156 (31%), Positives = 82/156 (52%)
Query: 8 LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK 67
+ IG + T+E L+ +F +G + + V++ + T R+R FGFV +++ A+ +
Sbjct: 9 VLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 68 -HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
H +DG VE K+AV R+D + +K+FVGGL V E D ++F
Sbjct: 69 PHAVDGNTVELKRAVSREDS----------ARPGAHAKVKKLFVGGLKGDVAEGDLIEHF 118
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
QFG + ++ D + + RGFGF+ + S +A DK
Sbjct: 119 SQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADK 154
Score = 173 (66.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVF-ADPAVAEIVIQ 65
KLF+GG+ D E L E+FS +G V +A I+ D+ +G+ RGFGFV F + A + +
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVV 158
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I G VE KKAVP++D
Sbjct: 159 KFHPIQGHRVEVKKAVPKED 178
Score = 118 (46.6 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAV 167
+ +G +ES + +F+ FGT+TD VV+ + T+R R FGF+TY + E D A
Sbjct: 9 VLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 168 P 168
P
Sbjct: 69 P 69
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 189 (71.6 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVF--ADPAVA 60
SD GKLFIGG++++TNE+ L++ F+ YG + E V++KDR T R+RGFGFV F D A
Sbjct: 2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKD 61
Query: 61 EIVIQEKHNIDGRMVEAKKA 80
++ ++DGR + +A
Sbjct: 62 AMMAMNGKSVDGRQIRVDQA 81
Score = 128 (50.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 36/111 (32%), Positives = 55/111 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVKR 165
K+F+GGL E ++ F ++G I++VVV+ D T+R RGFGF+T+++ ++A D +
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 166 AVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
K + R G G R G GY + GG G GR
Sbjct: 66 MNGKSVDGRQIRVDQAGKSSGERR------G---GYRGGSSGGRGFFRGGR 107
Score = 57 (25.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 16/40 (40%), Positives = 17/40 (42%)
Query: 358 GY-GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GY G G GG GR G SS F +GGY G
Sbjct: 91 GYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDNRSGGYGG 130
Score = 44 (20.5 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
GYGS + F +GGYG + G+ S S G Y
Sbjct: 115 GYGS--SRFDNRSGGYGGSSGSRDYYGSG--RSQGSY 147
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 194 (73.4 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 37/82 (45%), Positives = 54/82 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M D GKL +GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKA 80
++ ++DGR + +A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
Score = 138 (53.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 34/110 (30%), Positives = 56/110 (50%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+ VGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSENRSRGYRGGSTGGRGFFRGGR 108
Score = 51 (23.0 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 181 GGYHYGLSRVNSFLNGYTQG---YTPSTVGGYGLRMDG 215
G YG SR +S GY Y + GGYG R G
Sbjct: 119 GDRGYGGSRFDSRSGGYNGSRDYYNSRSQGGYGDRSSG 156
Score = 50 (22.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G +G F G G G G+ R G S F + +GGY+G
Sbjct: 95 GGSTGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFDSRSGGYNG 137
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 165 (63.1 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T + + +F G + + V+ +D NT R+RGFGFV +A + +
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 67 K-HNIDGRMVEAKKAVPRDD 85
+ H +D R+VE +AV R+D
Sbjct: 61 RPHKVDARVVEPNRAVSRED 80
Score = 155 (59.6 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+F+GGL+ T + + +F+Q GT+TD VV D NT+R RGFGF+TY + E VD A
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 167 VPKEL 171
P ++
Sbjct: 61 RPHKV 65
Score = 149 (57.5 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 9 FIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH 68
F+ GI DT E L+ + YG++ IM DR G+ R F FV F D + EIV+Q+ H
Sbjct: 86 FVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGLGKKRDFAFVTFHDHDLDEIVLQKYH 145
Query: 69 NIDGRMVEAKKAVPR 83
N+ G E +KA+ +
Sbjct: 146 NVHGYNCEVRKALSK 160
Score = 73 (30.8 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 109 FVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
FV G+ E + ++Q+G I + +M D + R F F+T+ + +D++
Sbjct: 86 FVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGLGKKRDFAFVTFHDHD-LDEI 139
Score = 62 (26.9 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GYGSG ++G GYG G+ + + S GG+ G
Sbjct: 171 GYGSGGQNYGKQGSGYG---GSGSYDTYNNGGSRGGFGG 206
Score = 55 (24.4 bits), Expect = 8.8e-18, Sum P(3) = 8.8e-18
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 359 YGSGDNSFGLGAGGYGRNPGTTLAQSSSFAA-SNGGYDGVF 398
Y G +G G YG+ G+ S S+ +NGG G F
Sbjct: 165 YSGGGRGYGSGGQNYGKQ-GSGYGGSGSYDTYNNGGSRGGF 204
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 224 (83.9 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 49/158 (31%), Positives = 86/158 (54%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
+LFI G++++T E L+ +F +G +++ V+M D NT +R FGFV++A + +
Sbjct: 15 RLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVDAAVNV 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H ++ R+ + K AV R+D R +K FVGG+ E + Y
Sbjct: 75 RPHKVN-RIGKPKMAVSREDS---QRPGAHLTG-------KKTFVGGIKEDTEEHHLRHY 123
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F+Q+G I + +M D + + RGF F+T D +++DK+
Sbjct: 124 FEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKI 161
Score = 162 (62.1 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K F+GGI DT E L+ YF YGE+ IM D+ + + RGF FV D ++ +IVIQ
Sbjct: 105 KTFVGGIKEDTEEHHLRHYFEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQ 164
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
++H ++G E ++A+ + +
Sbjct: 165 KQHTVNGHNYEVRRALSKQE 184
Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
++F+ GL T + +F Q+G + D VVM D NT+ R FGF+ Y + E VD
Sbjct: 15 RLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVDAAVNV 74
Query: 167 VPKELS 172
P +++
Sbjct: 75 RPHKVN 80
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 194 (73.4 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 37/82 (45%), Positives = 54/82 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M D GKL +GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKA 80
++ ++DGR + +A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
Score = 138 (53.6 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 34/110 (30%), Positives = 56/110 (50%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+ VGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSENRSRGYRGGSTGGRGFFRGGR 108
Score = 50 (22.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G +G F G G G G+ R G S F + +GGY+G
Sbjct: 95 GGSTGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFDSRSGGYNG 137
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 194 (73.4 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 37/82 (45%), Positives = 54/82 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M D GKL +GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKA 80
++ ++DGR + +A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
Score = 138 (53.6 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 34/110 (30%), Positives = 56/110 (50%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+ VGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSENRSRGYRGGSTGGRGFFRGGR 108
Score = 50 (22.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G +G F G G G G+ R G S F + +GGY+G
Sbjct: 95 GGSTGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFDSRSGGYNG 137
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 189 (71.6 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 33/82 (40%), Positives = 58/82 (70%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M S+ GKLF+GG++++T+E+ L+++FS++G + E V++KDR T R+RGFGF+ F +P A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 EIVIQEKH--NIDGRMVEAKKA 80
++ + ++DGR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
Score = 146 (56.5 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 43/119 (36%), Positives = 53/119 (44%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL E + +F FG I++VVV+ D TQR RGFGFIT+ + E RA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 167 VPKELSPG----------PTRSPLGGYHYGLSRVNSFLNG-----YTQGYTPSTVGGYG 210
+ E G R GG R S+ G Y G S GGYG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYGSGRYDSRPGGYG 125
Score = 54 (24.1 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYD 395
GYGSG + GGYG G + S S GGYD
Sbjct: 111 GYGSG--RYDSRPGGYGYGYGRSRDYSGR---SQGGYD 143
Score = 47 (21.6 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 181 GGYHYGLSRVNSFLNGYTQG-YTPSTVGGY 209
GGY YG R + +G +QG Y + G Y
Sbjct: 122 GGYGYGYGRSRDY-SGRSQGGYDRYSGGNY 150
Score = 45 (20.9 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPG 378
+GYG + G GGY R G
Sbjct: 126 YGYGRSRDYSGRSQGGYDRYSG 147
Score = 40 (19.1 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRF 217
G YG R +S GY GY S Y R G +
Sbjct: 108 GDQGYGSGRYDSRPGGYGYGYGRSR--DYSGRSQGGY 142
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 196 (74.1 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 36/82 (43%), Positives = 56/82 (68%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M D GKLF+GG++++T EE L++ FS YG+V E V++KDR + R+RGFGFV F +P A
Sbjct: 1 MSCDEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDA 60
Query: 61 E--IVIQEKHNIDGRMVEAKKA 80
+ ++ ++DGR + +A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
Score = 134 (52.2 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 36/114 (31%), Positives = 57/114 (50%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVK- 164
K+FVGGL TE ++ F ++G + +VVV+ D ++R RGFGF+T+++ E+A D +
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 165 --------RAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
R + + + + GGY G S F G +G GYG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGRGFFRG-GRGRGGGGDRGYG 119
Score = 46 (21.3 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 358 GY-GSGDNSFGLGAGGYGRNPGTTLAQ--SSSFAASNGGY 394
GY G G GG GR G SS F +GGY
Sbjct: 92 GYRGGSSGGRGFFRGGRGRGGGGDRGYGGSSRFENRSGGY 131
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 187 (70.9 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 33/82 (40%), Positives = 57/82 (69%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M S+ GKLF+GG++++T+E L+++FS++G + E V++KDR T R+RGFGF+ F +P A
Sbjct: 1 MSSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 EIVIQEKH--NIDGRMVEAKKA 80
++ + ++DGR + A
Sbjct: 61 SNAMRAMNGESLDGRQIRVDHA 82
Score = 153 (58.9 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 46/115 (40%), Positives = 57/115 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL E + +F FG I++VVV+ D TQR RGFGFIT+ + E RA
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 167 VPKELSPG-PTRSPLGGYHYGLSRVNSFLNGYTQGYT-PSTVG--GYGL-RMDGR 216
+ E G R G SR +F GY +G P G GYG R D R
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRGGAF-GGYERGRGYPRGGGDQGYGSGRYDNR 120
Score = 56 (24.8 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 358 GYGSG--DNSFGLGAGGYGRNPGTTLAQSSSFAA-SNGGYD 395
GYGSG DN G GYG G +S + S GGYD
Sbjct: 111 GYGSGRYDNRPGAYGFGYGYGYG----RSRDYGGRSQGGYD 147
Score = 44 (20.5 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPG 378
+GYG + G GGY R G
Sbjct: 130 YGYGRSRDYGGRSQGGYDRYSG 151
Score = 40 (19.1 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 182 GYHYGLSRVNSFLNGYTQG-YTPSTVGGY 209
GY YG R + G +QG Y + G Y
Sbjct: 127 GYGYGYGRSRDY-GGRSQGGYDRYSGGNY 154
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 194 (73.4 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 53/173 (30%), Positives = 79/173 (45%)
Query: 43 TGRARGFGFVVFADPAVAEIVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXX 101
T R+RGFGFV + + + H +DGR+VE K+A+ R+D R
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSREDS---QRPDAHLT---- 53
Query: 102 XXRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
+KIFVG + E + YF+Q+G I + +M D +++ RGF F+T+D ++VD
Sbjct: 54 ---VKKIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVD 110
Query: 162 KV---KRAVPKELSPGPTRSPLGGYHYGLSRVNSF-LNGYTQGYTPSTVGGYG 210
K+ K R PL + + NG GY P GYG
Sbjct: 111 KIVTQKYHTVNGHHKCEVRKPLSKQEMASASFSQRGRNGSRTGY-PGGSRGYG 162
Score = 151 (58.2 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+G I DT E L++YF YG++ IM DR + + RGF FV F D +V +IV Q
Sbjct: 56 KIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVTQ 115
Query: 66 EKHNIDGR-MVEAKKAVPRDD 85
+ H ++G E +K + + +
Sbjct: 116 KYHTVNGHHKCEVRKPLSKQE 136
Score = 46 (21.3 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 358 GYGSGDNSFGLGAGGYG 374
GYGSG G GYG
Sbjct: 160 GYGSGGQDCGNQGSGYG 176
Score = 42 (19.8 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTL-AQSSSFAASNGGYDG 396
FG G + FG +G G A+SS GGY G
Sbjct: 201 FGGGGSYSDFG-NYNNFGPMKGGNFGARSSGPNDGGGGYGG 240
Score = 37 (18.1 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 357 FGYGSGDNSFGLGA----GGYGRNPGTTLAQSSSFAASNGGYDG 396
+ G G +SFG G+ GG G + ++F GG G
Sbjct: 184 YNNGGGGSSFGSGSRRNFGGGGSY--SDFGNYNNFGPMKGGNFG 225
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 219 (82.2 bits), Expect = 7.4e-18, P = 7.4e-18
Identities = 47/130 (36%), Positives = 71/130 (54%)
Query: 8 LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK 67
L + G+ W T E+ LKEYFST+GEV+ + KD TG ++GFGFV F + V+ ++
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYFD 127
H IDGR + K +P Q R+RK+FVG +TE + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ-----------SQDEPLRSRKVFVGRCTEDMTEDELREFFS 212
Query: 128 QFGTITDVVV 137
Q+G + DV +
Sbjct: 213 QYGDVMDVFI 222
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+G + D E+ L+E+FS YG+V++ I K R F FV FAD +A+ + E
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE 246
Query: 67 KHNIDGRMVEAKKAVPR 83
I G V A P+
Sbjct: 247 DLIIKGISVHISNAEPK 263
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 219 (82.2 bits), Expect = 7.4e-18, P = 7.4e-18
Identities = 47/130 (36%), Positives = 71/130 (54%)
Query: 8 LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK 67
L + G+ W T E+ LKEYFST+GEV+ + KD TG ++GFGFV F + V+ ++
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYFD 127
H IDGR + K +P Q R+RK+FVG +TE + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ-----------SQDEPLRSRKVFVGRCTEDMTEDELREFFS 212
Query: 128 QFGTITDVVV 137
Q+G + DV +
Sbjct: 213 QYGDVMDVFI 222
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+G + D E+ L+E+FS YG+V++ I K R F FV FAD +A+ + E
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE 246
Query: 67 KHNIDGRMVEAKKAVPR 83
I G V A P+
Sbjct: 247 DLIIKGISVHISNAEPK 263
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 199 (75.1 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 36/80 (45%), Positives = 56/80 (70%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDD 85
+ H +DGR+VE K+AV R+D
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 179 (68.1 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 42/105 (40%), Positives = 59/105 (56%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 166 AVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
A P ++ G P +SR +S G VGG+G
Sbjct: 74 ARPHKVD-GRVVEP----KRAVSREDSQRPGAHLTVKKIFVGGFG 113
Score = 39 (18.8 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSS 386
G+G+ ++FG G G Y + G QSS+
Sbjct: 130 GFGNDGSNFG-GGGSYN-DFGNYNNQSSN 156
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 189 (71.6 bits), Expect = 7.9e-18, Sum P(2) = 7.9e-18
Identities = 33/82 (40%), Positives = 58/82 (70%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
M S+ GKLF+GG++++T+E+ L+++FS++G + E V++KDR T R+RGFGF+ F +P A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 EIVIQEKH--NIDGRMVEAKKA 80
++ + ++DGR + A
Sbjct: 61 SNAMRAMNGESLDGRQIRVDHA 82
Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 44/118 (37%), Positives = 53/118 (44%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL E + +F FG I++VVV+ D TQR RGFGFIT+ + E RA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 167 VPKELSPG----------PTRSPLGGYH----YGLSRVNSFLNGYTQGYTPSTVGGYG 210
+ E G R GG G SR GY G S GGYG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGARGRGYSRGGGD-QGYGNGRYDSRPGGYG 123
Score = 50 (22.7 bits), Expect = 7.9e-18, Sum P(2) = 7.9e-18
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 181 GGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRF 217
G YG R +S GY GY YG R G +
Sbjct: 106 GDQGYGNGRYDSRPGGYGYGYGYGRSRDYGSRSQGSY 142
Score = 50 (22.7 bits), Expect = 7.9e-18, Sum P(2) = 7.9e-18
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 358 GY--GSGDNSFGLGA-----GGYGRNPGTTLAQSSSFAA-SNGGYD 395
GY G GD +G G GGYG G +S + + S G YD
Sbjct: 100 GYSRGGGDQGYGNGRYDSRPGGYGYGYG--YGRSRDYGSRSQGSYD 143
Score = 42 (19.8 bits), Expect = 5.4e-17, Sum P(2) = 5.4e-17
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 360 GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGY 394
G+ +FG GY R G + + + GGY
Sbjct: 88 GTRGGAFGARGRGYSRGGGDQGYGNGRYDSRPGGY 122
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 177 (67.4 bits), Expect = 8.6e-18, Sum P(2) = 8.6e-18
Identities = 32/79 (40%), Positives = 52/79 (65%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
+ F+GG++W TN+E L+ FS +G+V+++ I+ DR +GR+RGFGFV F D I+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 67 KHN--IDGRMVEAKKAVPR 83
+ +DGR++ +A R
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
Score = 134 (52.2 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 36/113 (31%), Positives = 52/113 (46%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVKR 165
+ FVGGLA + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+ D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 166 AVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRFS 218
KEL G + G G GY GGY G +S
Sbjct: 67 MNGKELD-GRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYS 118
Score = 63 (27.2 bits), Expect = 8.6e-18, Sum P(2) = 8.6e-18
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLA--QSSSFAASNGGY 394
GYGSG G G GG GR G S+ GG+
Sbjct: 131 GYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGGGGW 169
Score = 49 (22.3 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 358 GY--GSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
GY G G G G GGY G + S S GG G
Sbjct: 100 GYRSGGGGGYSGGGGGGYSGGGGGGYERRSGGYGSGGGGGG 140
Score = 41 (19.5 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 360 GSGDNSFGLGAGGY--GRNPGTTLAQSSSFAASNGGY 394
GSG G GGY G G + + +GGY
Sbjct: 96 GSGGGYRSGGGGGYSGGGGGGYSGGGGGGYERRSGGY 132
Score = 41 (19.5 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 12/39 (30%), Positives = 13/39 (33%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G G G G GGY G + S GG G
Sbjct: 86 GSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGG 124
Score = 37 (18.1 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 365 SFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
S G G GG GR G+ S GGY G
Sbjct: 84 SRGSGGGGGGRG-GSGGGYRSG---GGGGYSG 111
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 184 (69.8 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVF--ADPA 58
M D GKLF+GG+S+DT+E+ L+ FS YG++ E V++KDR T R+RGFGFV F + A
Sbjct: 1 MSCDEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKA 80
+ +DGR + +A
Sbjct: 61 KDAMAGMNGKTVDGRQIRVDQA 82
Score = 133 (51.9 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 40/122 (32%), Positives = 60/122 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVK- 164
K+FVGGL+ E + F ++G I +VVV+ D T+R RGFGF+T+++ E+A D +
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 165 --------RAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG--LRMD 214
R + + + + GGY G S G+ +G GGYG R D
Sbjct: 67 MNGKTVDGRQIRVDQAGKSSNDRRGGYRGGSSGGG---RGFFRGGRGRGGGGYGGSSRFD 123
Query: 215 GR 216
R
Sbjct: 124 NR 125
Score = 55 (24.4 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 17/45 (37%), Positives = 18/45 (40%)
Query: 358 GYGSGDNSFGLG--AGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
GY G + G G GG GR G S S GGY G D
Sbjct: 92 GYRGGSSGGGRGFFRGGRGRGGGGYGGSSRFDNRSGGGYGGWIPD 136
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 218 (81.8 bits), Expect = 9.6e-18, P = 9.6e-18
Identities = 46/126 (36%), Positives = 75/126 (59%)
Query: 8 LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVIQE 66
+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V +++ Q+
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 67 KHNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYF 126
+H ++G++++ K+A +KIFVGGL+ E ++YF
Sbjct: 61 EHKLNGKVIDPKRA----------------KAMKTKEPVKKIFVGGLSPDTPEEKIREYF 104
Query: 127 DQFGTI 132
FG +
Sbjct: 105 GGFGEV 110
Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+F+GGL+ T+ D K YF +FG + D + D T R RGFGF+ + E+VDKV
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 56
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 213 (80.0 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 47/130 (36%), Positives = 70/130 (53%)
Query: 8 LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK 67
L + G+ W T E+ LKEYFST+GEV+ + KD TG ++GFGFV F D V+ ++
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQR 165
Query: 68 HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYFD 127
H IDGR + K +P Q R+RK+FVG +T + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ-----------SPDEPLRSRKVFVGRCTEDMTADELQQFFA 212
Query: 128 QFGTITDVVV 137
Q+G + DV +
Sbjct: 213 QYGEVVDVFI 222
Score = 110 (43.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+G + D + L+++F+ YGEVV+ I K R F FV FAD VA+ + E
Sbjct: 192 KVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKP-----FRAFAFVTFADDQVAQSLCGE 246
Query: 67 KHNIDGRMVEAKKAVPR 83
I G V A P+
Sbjct: 247 DLIIKGISVHISNAEPK 263
Score = 101 (40.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+T + V GL TE D K+YF FG + V V D T +GFGF+ + E KV
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKV 161
Score = 61 (26.5 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQ-SSSFAASNGGYDGVF 398
G+ SG+NS+G G N G + S+S A S+ G++G F
Sbjct: 366 GFSSGNNSYG------GSNSGAAIGWGSASNAGSSSGFNGGF 401
Score = 53 (23.7 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 357 FGYGSG-DNSFGLGAGGYGRNPGTTLAQSSSFAA 389
FG G NS G G GG G N G+ + +F A
Sbjct: 283 FGNQGGFGNSRG-GGGGLGNNQGSNMGGGMNFGA 315
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 213 (80.0 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 47/130 (36%), Positives = 70/130 (53%)
Query: 8 LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK 67
L + G+ W T E+ LKEYFST+GEV+ + KD TG ++GFGFV F D V+ ++
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQR 165
Query: 68 HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYFD 127
H IDGR + K +P Q R+RK+FVG +T + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ-----------SPDEPLRSRKVFVGRCTEDMTADELQQFFA 212
Query: 128 QFGTITDVVV 137
Q+G + DV +
Sbjct: 213 QYGEVVDVFI 222
Score = 110 (43.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+G + D + L+++F+ YGEVV+ I K R F FV FAD VA+ + E
Sbjct: 192 KVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKP-----FRAFAFVTFADDQVAQSLCGE 246
Query: 67 KHNIDGRMVEAKKAVPR 83
I G V A P+
Sbjct: 247 DLIIKGISVHISNAEPK 263
Score = 101 (40.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+T + V GL TE D K+YF FG + V V D T +GFGF+ + E KV
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKV 161
Score = 61 (26.5 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQ-SSSFAASNGGYDGVF 398
G+ SG+NS+G G N G + S+S A S+ G++G F
Sbjct: 366 GFSSGNNSYG------GSNSGAAIGWGSASNAGSSSGFNGGF 401
Score = 53 (23.7 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 357 FGYGSG-DNSFGLGAGGYGRNPGTTLAQSSSFAA 389
FG G NS G G GG G N G+ + +F A
Sbjct: 283 FGNQGGFGNSRG-GGGGLGNNQGSNMGGGMNFGA 315
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 217 (81.4 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 37/80 (46%), Positives = 62/80 (77%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVA 60
+ D GK+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V
Sbjct: 74 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 133
Query: 61 EIVIQEKHNIDGRMVEAKKA 80
+++ Q++H ++G++++ K+A
Sbjct: 134 KVMDQKEHKLNGKVIDPKRA 153
Score = 142 (55.0 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
K+F+GGL+ T+ D K YF +FG + D + D T R RGFGF+ + E+VDKV
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
>ZFIN|ZDB-GENE-031030-1 [details] [associations]
symbol:tardbpl "TAR DNA binding protein, like"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-031030-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q14103 HOGENOM:HOG000254792
HOVERGEN:HBG058671 GeneTree:ENSGT00570000079202 OMA:PSISRIF
EMBL:CR381616 EMBL:BC044405 IPI:IPI00504192 RefSeq:NP_938178.1
UniGene:Dr.33664 SMR:Q803N5 STRING:Q803N5
Ensembl:ENSDART00000027255 GeneID:386630 KEGG:dre:386630 CTD:386630
InParanoid:Q803N5 NextBio:20813960 Uniprot:Q803N5
Length = 303
Score = 221 (82.9 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 48/157 (30%), Positives = 82/157 (52%)
Query: 8 LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK 67
L + G+ W T E+ LK+YF T+GEV+ + +D +G ++GFGFV F D V+ ++
Sbjct: 107 LIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQR 166
Query: 68 HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKYFD 127
H IDGR + K +P ++ R+RK+FVG +T + +++F
Sbjct: 167 HMIDGRWCDCK--LPN------SKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFM 218
Query: 128 QFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDKV 163
Q+G +TDV + +P R F F+T+ ++ +
Sbjct: 219 QYGEVTDVFI------PKPFRAFAFVTFADDQVAQSL 249
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 207 (77.9 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DTNE+ L++ FS YG++ E V++KDR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAEIVIQEKHNIDGRMVEAKKAVPRDD 85
++ ++DGR + +A D
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 145 (56.1 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ +D K A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDA 63
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGR 216
+ G + + G + + + ++GY + GG G GR
Sbjct: 64 MMA--MNGKS---VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
Score = 50 (22.7 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 360 GSGDNSFGLGAGGYG--RNPGTTLAQSSSFA-ASNGG 393
G G N F +GGYG R+ ++ +QS ++ S+GG
Sbjct: 122 GYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGG 158
Score = 46 (21.3 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 358 GYGSGDNSF---GLGAG-GYGRNPGTTLAQSSSFAASNGGYDG 396
G +G F G G G G+ R G + F + +GGY G
Sbjct: 95 GGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGG 137
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 209 (78.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 51/157 (32%), Positives = 81/157 (51%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ + S + +M D NT +RGF FV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHCSHS----PSCVMTDPNTKCSRGFRFVTYATVEEVDAAMNA 70
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRXXXXXXXXXXXXRTRKIFVGGLASTVTESDFKKY 125
+ H +D R+VE K+ V R+ R +KIF GG+ E + Y
Sbjct: 71 RPHKVDRRVVEPKRGVSREGS---QRPGAHLT-------VKKIFAGGIKEDTEERHLRDY 120
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
F+ G I + +M D ++ + RGF F+T+D ++VDK
Sbjct: 121 FENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDK 157
Score = 159 (61.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F GGI DT E L++YF G++ IM D ++G+ RGF FV F D +V + VIQ
Sbjct: 102 KIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQ 161
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++G E +KA+ + +
Sbjct: 162 KYHTVNGHNREVRKALSKQE 181
Score = 48 (22.0 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 361 SGDNSFGLG-AGGYGRNPGTTLAQSSSFAASNGG-YDG 396
SG +FG G GG+G N + S + GG Y G
Sbjct: 193 SGSGNFGGGRGGGFGGNENFGHGGNGSGGSRGGGRYGG 230
Score = 46 (21.3 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDG 396
G+G +N FG G G G + G + GY+G
Sbjct: 205 GFGGNEN-FGHGGNGSGGSRG-----GGRYGGGGDGYNG 237
Score = 44 (20.5 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 358 GYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNG 392
G+G+ ++FG G G Y + G +SS+F G
Sbjct: 237 GFGNDGSNFG-GGGSYS-DFGNYNNRSSNFGPVKG 269
Score = 38 (18.4 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 357 FGYGSGDNSFGLGAGGYGRNPGTTLAQSSSFAASNGGYDGVFAD 400
FG+G + G G YG G SN G G ++D
Sbjct: 212 FGHGGNGSGGSRGGGRYGG--GGDGYNGFGNDGSNFGGGGSYSD 253
WARNING: HSPs involving 808 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.137 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 466 351 0.00078 117 3 11 22 0.44 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1058
No. of states in DFA: 594 (63 KB)
Total size of DFA: 210 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.99u 0.08s 26.07t Elapsed: 00:00:01
Total cpu time: 26.07u 0.09s 26.16t Elapsed: 00:00:01
Start: Mon May 20 20:09:41 2013 End: Mon May 20 20:09:42 2013
WARNINGS ISSUED: 2