BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012289
(466 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 172 bits (435), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 135/238 (56%), Gaps = 35/238 (14%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVI 64
GKLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 65 QEKHNIDGRMVEAKKAVPRDDQIVLNRS-SGSIHGSPGP--GRTRKIFVGGLASTVTESD 121
H +DGR ++ K PR Q +R G P R+ KIFVGG+ E++
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETE 129
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRA 166
K+YF++FG +T+VV++YD QRPRGFGFIT++ E++VD+ VKRA
Sbjct: 130 LKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 189
Query: 167 VPKELSPGPTRSPLGGYHYGLSRVNSFLNGYT-------QGYTP--------STVGGY 209
P++ S T P G +G + S NG+T QGY+P T+GGY
Sbjct: 190 EPRD-SKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGMWMPTGQTIGGY 246
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E LKEYF+ +G V E V++ D R RGFGF+ F D +V +
Sbjct: 111 SRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 170
Query: 62 IVIQEKHNIDGRMVEAKKAVPRD 84
V H+I G+ VE K+A PRD
Sbjct: 171 AVNMHFHDIMGKKVEVKRAEPRD 193
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 137/250 (54%), Gaps = 46/250 (18%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIV 63
++GK+FIGG++W+T ++ L++YF +GEV++ +M+D TGR+RGFGF+ F +P V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
+ ++H++DG++++ K+A+PR++Q +T K+FVGG+ TE +F+
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQ----------------EKTAKMFVGGVPGDCTEEEFR 264
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD---------------KVKRAVP 168
+F+QFG + D +M D +T RPRGFGF+TY++E AV+ +VKRA P
Sbjct: 265 NFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATP 324
Query: 169 KELSPGPTRSPLGGYH-----YGLSRVNSFLNGYTQGYTPSTVGGYGLRMDG-----RFS 218
K GYH Y +N + G TP+ + Y +M R
Sbjct: 325 KASLRDSHDRHQHGYHGNANPYYAQNMNMY-----GGMTPAMMAQYYRQMQQYMEAMRNM 379
Query: 219 PVAGGRSGFP 228
P A G +P
Sbjct: 380 PAAAGAVPYP 389
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q K+F+GG+ D EE + +F+ +G V++A +M D++TGR RGFGFV + + + E
Sbjct: 243 QEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302
Query: 62 IVIQEKH-NIDGRMVEAKKAVPR 83
+ + + I G+ VE K+A P+
Sbjct: 303 ATMSQPYITIHGKPVEVKRATPK 325
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 141/264 (53%), Gaps = 59/264 (22%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D GK+FIGG+SW T+ + L++YFS +GE+ E ++M+D T R+RGFGFV FADPA +
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 IVI-QEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
V+ Q H +D + ++ K A PR Q + RT+KIFVGGL++
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSANTVVE 124
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------KR 165
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+KV K+
Sbjct: 125 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 184
Query: 166 AVPKELSPGP-TRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRFSPVAGGR 224
A PKE+ P TR G GL P T+ + L M G
Sbjct: 185 AQPKEVMFPPGTR----GRARGL---------------PYTMDAFMLGM---------GM 216
Query: 225 SGFPPFGSGYGMGMIEPGLNPSFG 248
G+P F + YG G PG PS+G
Sbjct: 217 LGYPNFVATYGRGY--PGFAPSYG 238
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 124/223 (55%), Gaps = 19/223 (8%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVI 64
GKLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 65 QEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGP--GRTRKIFVGGLASTVTESDF 122
H +DGR ++ K PR Q R P ++ KIFVGG+ E++
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAV 167
++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ VKRA
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 189
Query: 168 PKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
P++ P G +G V + NG+ P+ GYG
Sbjct: 190 PRDSKSQAPGQP-GASQWGSRVVPNAANGWAGQPPPTWQQGYG 231
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E L+EYF +G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 IVIQEKHNIDGRMVEAKKAVPRD 84
V H+I G+ VE K+A PRD
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRD 192
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV--- 163
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 164 ------------KRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGL 211
K P+ + P TR P G+ G NS N G P G L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTR-PKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 212 R 212
R
Sbjct: 130 R 130
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 141/264 (53%), Gaps = 59/264 (22%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D GK+FIGG+SW T+ + L++YFS +GE+ E ++M+D T R+RGFGFV FADPA +
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 IVI-QEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
V+ Q H +D + ++ K A PR Q + RT+KIFVGGL++
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSANTVVE 124
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------KR 165
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+KV K+
Sbjct: 125 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 184
Query: 166 AVPKELSPGP-TRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRFSPVAGGR 224
A PKE+ P TR G GL P T+ + L M G
Sbjct: 185 AQPKEVMFPPGTR----GRARGL---------------PYTMDAFMLGM---------GM 216
Query: 225 SGFPPFGSGYGMGMIEPGLNPSFG 248
G+P F + YG G PG PS+G
Sbjct: 217 LGYPNFVATYGRGY--PGFAPSYG 238
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 123/223 (55%), Gaps = 19/223 (8%)
Query: 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEIVI 64
GKLF+GG+ W T +E L+ YFS YGEVV+ VIMKD+ T ++RGFGFV F DP V ++
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 65 QEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSP--GPGRTRKIFVGGLASTVTESDF 122
H +DGR ++ K PR Q R P ++ KIFVGG+ E++
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAV 167
++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ VKRA
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 189
Query: 168 PKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYG 210
P++ P G +G S NG+ P+ GYG
Sbjct: 190 PRDSKNQAPGQP-GASQWGSRVAPSAANGWAGQPPPTWQQGYG 231
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAE 61
S + K+F+GGI + E L+EYF +G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 IVIQEKHNIDGRMVEAKKAVPRD 84
V H+I G+ VE K+A PRD
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRD 192
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV--- 163
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 164 ------------KRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGL 211
K P+ + P TR P G+ G +S N G P G L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTR-PKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129
Query: 212 R 212
R
Sbjct: 130 R 130
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 115/184 (62%), Gaps = 28/184 (15%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADP-AVAEI 62
D GK+FIGG+SW T+ E L++YF YG++ EA++MKD T R+RGFGFV F+DP +V ++
Sbjct: 27 DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV 86
Query: 63 VIQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
+ Q H +DG+ V+ K A PR R+ + RT+KIFVGGL++ T D
Sbjct: 87 LTQGTHELDGKKVDPKVAFPR-------RAHPKMV-----TRTKKIFVGGLSAPTTLEDV 134
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------KRAV 167
K YF+QFG I D ++M+D T R RGFGF+T+ SE+ VDKV K+A
Sbjct: 135 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQ 194
Query: 168 PKEL 171
PKE+
Sbjct: 195 PKEV 198
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 111/184 (60%), Gaps = 28/184 (15%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEI 62
D K+FIGG+SW T +E L+EYF +GEV E ++M+D T R+RGFGFV F D A V ++
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 63 VIQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
+ Q +H +D + ++ K A PR Q + RT+KIFVGGL+ T D
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDV 125
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------KRAV 167
K+YF+QFG + D ++M+D T R RGFGF+T++SE+ V+KV K+A
Sbjct: 126 KQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 168 PKEL 171
PKE+
Sbjct: 186 PKEV 189
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 110/184 (59%), Gaps = 28/184 (15%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEI 62
D K+FIGG+SW T +E L+EYF +GEV E ++M+D T R+RGFGFV F D A V ++
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 63 VIQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
+ Q +H +D + ++ K A PR Q + RT+KIFVGGL+ T D
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDV 125
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------KRAV 167
K YF+QFG + D ++M+D T R RGFGF+T++SE+ V+KV K+A
Sbjct: 126 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 168 PKEL 171
PKE+
Sbjct: 186 PKEV 189
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 110/184 (59%), Gaps = 28/184 (15%)
Query: 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPA-VAEI 62
D K+FIGG+SW T +E L+EYF +GEV E ++M+D T R+RGFGFV F D A V ++
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 63 VIQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
+ Q +H +D + ++ K A PR Q + RT+KIFVGGL+ T D
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDV 125
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------KRAV 167
K YF+QFG + D ++M+D T R RGFGF+T++SE+ V+KV K+A
Sbjct: 126 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 168 PKEL 171
PKE+
Sbjct: 186 PKEV 189
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 105/163 (64%), Gaps = 13/163 (7%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ + GKLF+GG+SW+T +E L YF +G++++ V+MK+ +GR+RGFGFV FADP
Sbjct: 3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62
Query: 62 IVIQE-KHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
V+Q H +DGR ++ K PR Q P G K+F+GGL S VTE+
Sbjct: 63 HVLQNGPHTLDGRTIDPKPCNPRTLQ------------KPKKGGGYKVFLGGLPSNVTET 110
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
D + +F+++G +T+VV+MYD ++ RGFGF++++ E +V+ V
Sbjct: 111 DLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHV 153
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 155 bits (391), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 114/187 (60%), Gaps = 31/187 (16%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVA 60
+ ++ K+FIGG++WDT E+ L+EYF YG V + IMKD TGR+RGFGF+ F P+
Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+ V++ +H +DG++++ K+A+PRD+Q +T KIFVGG+ V
Sbjct: 214 DEVVKTQHILDGKVIDPKRAIPRDEQ----------------DKTGKIFVGGIGPDVRPK 257
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV---------------KR 165
+F+++F Q+GTI D +M D +T + RGFGF+TYDS +AVD+V KR
Sbjct: 258 EFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKR 317
Query: 166 AVPKELS 172
A P+ +
Sbjct: 318 AEPRHMQ 324
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 99/163 (60%), Gaps = 17/163 (10%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D+GK+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D A E
Sbjct: 26 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVE 85
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
V++ K H +DG++++ K+A ++ G P +K+FVGGL+ +E
Sbjct: 86 KVLELKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEE 129
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
K+YF FG I ++ + D T RGF FITY EE V K+
Sbjct: 130 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 172
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 17/163 (10%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D+GK+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
V++ K H +DG++++ K+A ++ G P +K+FVGGL+ +E
Sbjct: 204 KVLELKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEE 247
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
K+YF FG I ++ + D T RGF FITY EE V K+
Sbjct: 248 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 290
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 101/163 (61%), Gaps = 18/163 (11%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D + E
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 IVI-QEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
V+ Q++H +DGR+++ KKA+ ++ P +KIFVGGL TE
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 173
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF QFG I + + D + RGF FIT+ E+ V KV
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG++ + EE+++EYF +GE+ + D + RGF F+ F + + V+++
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 67 K-HNIDGRMVEAKKAVPRD 84
K H + G E K A P++
Sbjct: 220 KFHTVSGSKCEIKVAQPKE 238
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 17/163 (10%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D+GK+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 25 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 84
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
V++ K H +DG++++ K+A ++ G P +K+FVGGL+ +E
Sbjct: 85 KVLELKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEE 128
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
K+YF FG I ++ + D T RGF FITY EE V K+
Sbjct: 129 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 171
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 102/164 (62%), Gaps = 19/164 (11%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
+ D GK+F+GG+SWDT+++ LK+YF+ +GEVV+ I D NTGR+RGFGF++F D A E
Sbjct: 65 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 124
Query: 62 IVI-QEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGL-ASTVTE 119
V+ Q++H +DGR+++ KKA+ ++ P +KIFVGGL + TE
Sbjct: 125 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPESPTE 167
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF +FG I + + D + RGF FIT+ EE V KV
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 32/186 (17%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D GK+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D +
Sbjct: 22 QQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVD 81
Query: 62 IVIQEK-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
V++ K H +DG++++ K+A ++ G P +K+FVGGL+ TE
Sbjct: 82 KVLETKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPETTEE 125
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKR 165
K+YF FG I ++ + D T RGF F+TY EE V K +K
Sbjct: 126 QIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKV 185
Query: 166 AVPKEL 171
A PKE+
Sbjct: 186 AQPKEV 191
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 95/158 (60%), Gaps = 17/158 (10%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+FIGG+SWDT+++ L EY S +GEVV+ I D TGR+RGFGFV+F D A + V++
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
K H +DG++++ K+A ++ G P +K+FVGGL+ +E K+Y
Sbjct: 112 KEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKEY 155
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F FG I ++ + D T RGF FITY EE V K+
Sbjct: 156 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 193
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 92 SSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGF 151
S+ + S P K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF
Sbjct: 37 SACPLDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 96
Query: 152 ITYDSEEAVDKV 163
+ + +VDKV
Sbjct: 97 VLFKDAASVDKV 108
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 103/186 (55%), Gaps = 32/186 (17%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAE 61
Q D GK+FIGG+SWDT+++ L EY S +GEV++ I D TGR+RGFGFV+F D +
Sbjct: 22 QQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVD 81
Query: 62 IVIQ-EKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
V++ +H +DG++++ K+A ++ G P +K+FVGGL+ TE
Sbjct: 82 KVLETNEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPETTEE 125
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKR 165
K+YF FG I ++ + D T RGF F+TY EE V K +K
Sbjct: 126 QIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKA 185
Query: 166 AVPKEL 171
A PKE+
Sbjct: 186 AQPKEV 191
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+ + T +E LK++F +GE+V+ V+MKD T R+RGFGF+ ++ + +
Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H +DGR+VE K+AVPR + G P G T +K+FVGG+ + E+D +
Sbjct: 78 RPHKVDGRVVEPKRAVPRTEI-----------GRPEAGATVKKLFVGGIKEEMEENDLRD 126
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF Q+GT+ ++ D T++ RGF F+ +D + VDK+
Sbjct: 127 YFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKI 165
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 88 VLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPR 147
++N + HG P RK+F+GGL T+ K++F+Q+G I DVVVM D T+R R
Sbjct: 1 MVNMDRENDHGEPE--HVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSR 58
Query: 148 GFGFITYDSEEAVDKVKRAVPKELS 172
GFGFITY VD + A P ++
Sbjct: 59 GFGFITYSRAHMVDDAQNARPHKVD 83
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 105/158 (66%), Gaps = 11/158 (6%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG++ +T ++ ++E++S +GE+ + ++M+D T R+RGFGFV F+ + +++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
+ H IDG+ V+ K+AVPRDD+ NRS ++ T++++V G+ TE +Y
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDK---NRSESNVS-------TKRLYVSGVREDHTEDMLTEY 133
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
F ++GT+T ++ D TQ+PRGFGF+T+D ++VD+
Sbjct: 134 FTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQC 171
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 87 IVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRP 146
+ + +GS S P RKIFVGGL S T+ ++++ QFG ITD++VM D T+R
Sbjct: 4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS 63
Query: 147 RGFGFITYDSEEAVDKVKRAVPKEL---SPGPTRS-PLGGYHYGLSRVNS---FLNGYTQ 199
RGFGF+T+ + VD + P + + P R+ P + S V++ +++G +
Sbjct: 64 RGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVRE 123
Query: 200 GYTPSTVGGY 209
+T + Y
Sbjct: 124 DHTEDMLTEY 133
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 96/159 (60%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H +DGR+VE K+AV R+D PG T +KIFVGG+ E +
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVKRAVPKEL 171
A P ++
Sbjct: 70 AAMNARPHKV 79
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 96/159 (60%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H +DGR+VE K+AV R+D PG T +KIFVGG+ E +
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVKRAVPKEL 171
A P ++
Sbjct: 70 AAMNARPHKV 79
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 96/159 (60%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H +DGR+VE K+AV R+D PG T +KIFVGG+ E +
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVKRAVPKEL 171
A P ++
Sbjct: 70 AAMNARPHKV 79
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 96/159 (60%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H +DGR+VE K+AV R+D PG T +KIFVGG+ E +
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVKRAVPKEL 171
A P ++
Sbjct: 70 AAMNARPHKV 79
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 102/181 (56%), Gaps = 28/181 (15%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
H +DGR+VE K+AV R+D PG T +KIFVGG+ E +
Sbjct: 75 TPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVPK 169
YF+Q+G I + +M D + + RGF F+T+D ++VDK V++A+PK
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPK 183
Query: 170 E 170
+
Sbjct: 184 Q 184
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVKRAVPKEL 171
P ++
Sbjct: 70 AAMNTTPHKV 79
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 99/159 (62%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H+IDGR+VE K+AV R++ G PG T +K+FVGG+ E +
Sbjct: 70 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 118
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 119 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 161 KYHTINGHNAEVRKALSRQE 180
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 AVPKEL 171
A P +
Sbjct: 69 ARPHSI 74
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H +DGR+VE K+AV R+D PG T +KIFVGG+ E +
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+Q+G I + +M D + + RGF F+T+D +VDK+
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKI 162
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVD 69
Query: 162 KVKRAVPKEL 171
A P ++
Sbjct: 70 AAMNARPHKV 79
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 96/159 (60%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+ +F +G + + V+M+D NT R+RGFGFV +A + +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H +DGR+VE K+AV R+D PG T +KIFVGG+ E +
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+Q+G I + +M D + + RGF F+T+D ++VDK+
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + RK+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVKRAVPKEL 171
A P ++
Sbjct: 70 AAMNARPHKV 79
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 99/159 (62%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H+IDGR+VE K+AV R++ G PG T +K+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 99/159 (62%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H+IDGR+VE K+AV R++ G PG T +K+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 99/159 (62%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H+IDGR+VE K+AV R++ G PG T +K+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 173 KHHTINGHNAEVRKALSRQE 192
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 99/159 (62%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H+IDGR+VE K+AV R++ G PG T +K+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF YG++ I+ DR +G+ RGFGFV F D V +I +Q
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQ 172
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 173 KYHTINGHNAEVRKALSRQE 192
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 AVPKEL 171
A P +
Sbjct: 81 ARPHSI 86
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T +E L+E+F +G + + V+M+D N+ R+RGFGFV + + +
Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H +DGR+VE K+AV R+D PG T +KIFVGG+ E ++
Sbjct: 75 RPHKVDGRVVEPKRAVSREDS-----------SRPGAHLTVKKIFVGGIKEDTEEDHLRE 123
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+Q+G I + +M D + + RGF F+T++ ++VDK+
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKI 162
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 49/70 (70%)
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + RK+F+GGL+ T+ +++F+Q+GT+TD VVM D N++R RGFGF+TY S + VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVD 69
Query: 162 KVKRAVPKEL 171
A P ++
Sbjct: 70 AAMTARPHKV 79
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E+ L+EYF YG++ IM DR +G+ RGF FV F D +V +IVIQ
Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQ 165
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H ++ + +KA+ + +
Sbjct: 166 KYHTVNNHNSQVRKALSKQE 185
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 100/181 (55%), Gaps = 32/181 (17%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+FIGG+SWDT+++ L EY S +GEV++ I D TGR+RGFGFV+F D + V++
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 94
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
K H +DG++++ K+A ++ G P +K+FVGGL+ TE K+Y
Sbjct: 95 KEHKLDGKLIDPKRA-------------KALQGKEPP---KKVFVGGLSPETTEEQIKQY 138
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVPKE 170
F FG I ++ + D T RGF F+TY EE V K +K A PKE
Sbjct: 139 FGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKE 198
Query: 171 L 171
+
Sbjct: 199 V 199
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 97/159 (61%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S+ T EE L+ Y+ +G++ + V+M+D + R+RGFGFV F+ A + +
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H+IDGR+VE K+AV R++ G PG T +K+FVGG+ E +
Sbjct: 70 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 118
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF ++G I + ++ D + + RGFGF+T+D + VDK+
Sbjct: 119 YFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L++YF+ YG++ I+ DR +G+ RGFGFV F D V +IV+Q
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ R +
Sbjct: 161 KYHTINGHNAEVRKALSRQE 180
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 AVPKEL 171
A P +
Sbjct: 69 ARPHSI 74
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 98/161 (60%), Gaps = 17/161 (10%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDAAM 93
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDF 122
H +DGR+VE K+AV R+D + PG T +KIFVGG+ E +
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDSV-----------KPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+ YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%)
Query: 97 HGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 85
Query: 157 EEAVDKVKRAVPKEL 171
E VD A P ++
Sbjct: 86 VEEVDAAMCARPHKV 100
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 98/161 (60%), Gaps = 17/161 (10%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDAAM 93
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDF 122
H +DGR+VE K+AV R+D + PG T +KIFVGG+ E +
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDSV-----------KPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+ YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%)
Query: 97 HGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 85
Query: 157 EEAVDKVKRAVPKEL 171
E VD A P ++
Sbjct: 86 VEEVDAAMCARPHKV 100
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 98/161 (60%), Gaps = 17/161 (10%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G + + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDAAM 93
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDF 122
H +DGR+VE K+AV R+D + PG T +KIFVGG+ E +
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDSV-----------KPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+ YF+++G I + VM D + + RGF F+T+D + VDK+
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E KKA+ + +
Sbjct: 187 KYHTINGHNCEVKKALSKQE 206
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%)
Query: 97 HGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + RK+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 85
Query: 157 EEAVDKVKRAVPKEL 171
E VD A P ++
Sbjct: 86 VEEVDAAMCARPHKV 100
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 17/161 (10%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G++ + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDASM 85
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDF 122
H +DGR+VE K+AV R+D PG T +KIFVGG+ E
Sbjct: 86 SARPHKVDGRVVEPKRAVSREDS-----------ARPGAHLTVKKIFVGGIKEDTEEYHL 134
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+ YF+ +G I + VM D + + RGF F+T+D + VDK+
Sbjct: 135 RDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 175
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
K+F+GGI DT E L++YF YG++ +M+DR +G+ RGF FV F D V +IV+Q
Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+ E KKA+ + +
Sbjct: 179 KYHTINLHNCEVKKALSKQE 198
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 97 HGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + RK+F+GGL+ T+ +++F+Q+G +TD VVM D T+R RGFGF+TY
Sbjct: 18 HEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSC 77
Query: 157 EEAVDKVKRAVPKEL 171
E VD A P ++
Sbjct: 78 VEEVDASMSARPHKV 92
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 100/181 (55%), Gaps = 28/181 (15%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+ + T +E LK +F +G +V+ V+MKD T R+RGFGF+ ++ ++ + +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H IDGR+VE K+AVPR D SP G T +K+FVG L E +
Sbjct: 92 RPHKIDGRVVEPKRAVPRQDI-----------DSPNAGATVKKLFVGALKDDHDEQSIRD 140
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK---------------VKRAVPK 169
YF FG I D+ ++ D T + RGF F+ +D + VDK VK+A+PK
Sbjct: 141 YFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPK 200
Query: 170 E 170
+
Sbjct: 201 Q 201
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P RK+F+GGL T+ + K +F+++G I DVVVM D T+R RGFGFITY +D
Sbjct: 27 PEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMID 86
Query: 162 KVKRAVPKELS 172
+ +++ P ++
Sbjct: 87 EAQKSRPHKID 97
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 98/163 (60%), Gaps = 17/163 (10%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVA 60
Q + K+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A + P +KIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA--------------KAMKTKEP--VKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 98/163 (60%), Gaps = 17/163 (10%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVA 60
Q + K+FIGG+SWDT ++ LK+YFS +GEVV+ + D TGR+RGFGFV+F + +V
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A + P +KIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA--------------KAMKTKEP--VKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 95/161 (59%), Gaps = 17/161 (10%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEI---V 63
KLFIGG+S++T ++ L+E+F +G++ + V+M+D T R+RGFGFV ++ V E+ +
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYS--CVEEVDASM 85
Query: 64 IQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDF 122
H +DGR+VE K+AV R+D PG T +KIFVGG+ E
Sbjct: 86 SARPHKVDGRVVEPKRAVSREDS-----------ARPGAHLTVKKIFVGGIKEDTEEYHL 134
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+ Y + +G I + VM D + + RGF F+T+D + VDK+
Sbjct: 135 RDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 175
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 97 HGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + RK+F+GGL+ T+ +++F+Q+G +TD VVM D T+R RGFGF+TY
Sbjct: 18 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSC 77
Query: 157 EEAVDKVKRAVPKEL 171
E VD A P ++
Sbjct: 78 VEEVDASMSARPHKV 92
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 95/159 (59%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ Y+ +G + + V+M+D + R+RGFGFV F+ + +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H IDGR+VE K+AV R++ PG T +K+FVGG+ E ++
Sbjct: 70 RPHTIDGRVVEPKRAVAREES-----------AKPGAHVTVKKLFVGGIKEDTEEHHLRE 118
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I + ++ D + + RGF F+T+D + VDK+
Sbjct: 119 YFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKI 157
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L+EYF YG++ I+ D+ +G+ RGF FV F D V +IV+Q
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQ 160
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ + +
Sbjct: 161 KYHTINGHNAEVRKALSKQE 180
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 15/85 (17%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV-- 163
RK+F+GGL+ TE + Y++Q+GT+TD VVM D ++R RGFGF+T+ VD
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 164 -------------KRAVPKELSPGP 175
KRAV +E S P
Sbjct: 69 TRPHTIDGRVVEPKRAVAREESAKP 93
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 98/163 (60%), Gaps = 17/163 (10%)
Query: 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVA 60
Q + K+FIGG+SWDT ++ LK+YFS +G+VV+ + D TGR+RGFGFV+F + +V
Sbjct: 91 QREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150
Query: 61 EIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+++ Q++H ++G++++ K+A + P +KIFVGGL+ E
Sbjct: 151 KVMDQKEHKLNGKVIDPKRA--------------KAMKTKEP--VKKIFVGGLSPDTPEE 194
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++YF FG + + + D+ T + RGF FIT+ EE V K+
Sbjct: 195 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 237
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + + ++++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 67 K-HNIDGRMVEAKKAVPRD 84
K HN+ E K A+ ++
Sbjct: 241 KYHNVGLSKCEIKVAMSKE 259
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 11/157 (7%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG++ T EE LK ++ +G+VV+ V+M+D T R+RGFGF+ + + + +
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
+ H IDG+ VEAK+A+PR + R S + S +K+FVGGL E ++Y
Sbjct: 93 RPHIIDGKTVEAKRALPRPE-----RESRETNIS-----VKKLFVGGLKDNHDEECLREY 142
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
F QFG + V ++ D T + RGF F+ +D +AVDK
Sbjct: 143 FLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDK 179
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+F+GGLA TE + K ++ Q+G + DVVVM D T+R RGFGFITY VD+ +
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 166 AVP 168
P
Sbjct: 92 NRP 94
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GG+ + +EE L+EYF +G VV ++ D+ TG+ RGF FV F D AV + +++
Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183
Query: 66 EKHNIDGRMVEAKKAV 81
++H I V+ KK++
Sbjct: 184 KQHAIKYVHVDVKKSI 199
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 96/159 (60%), Gaps = 13/159 (8%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66
KLFIGG+S++T EE L+ ++ +G++ + V+M+D + R+RGFGFV F+ + +
Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69
Query: 67 K-HNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRT-RKIFVGGLASTVTESDFKK 124
+ H IDGR+VE K+AV R++ PG T +K+FVGG+ E ++
Sbjct: 70 RPHTIDGRVVEPKRAVAREES-----------AKPGAHVTVKKLFVGGIKEDTEEHHLRE 118
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
YF+++G I ++ D + + RGFGF+T++ + VDK+
Sbjct: 119 YFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKI 157
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQ 65
KLF+GGI DT E L+EYF YG++ I+ D+ +G+ RGFGFV F D V +IV+Q
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ 160
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ H I+G E +KA+ + +
Sbjct: 161 KYHTINGHNAEVRKALSKQE 180
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 15/85 (17%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV-- 163
RK+F+GGL+ TE + +++Q+G +TD VVM D ++R RGFGF+T+ VD
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 164 -------------KRAVPKELSPGP 175
KRAV +E S P
Sbjct: 69 ARPHTIDGRVVEPKRAVAREESAKP 93
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 100/185 (54%), Gaps = 37/185 (20%)
Query: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAV 59
+ D+ KLF+GG+SW+T E+ L+++F YGE+ + D TGR+RGF F+VF + A+
Sbjct: 51 QRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI 110
Query: 60 AEIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTE 119
++ ++H I+ + V+ KKA R HG KIFVGGL + +++
Sbjct: 111 DKVSAADEHIINSKKVDPKKAKAR-------------HG--------KIFVGGLTTEISD 149
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD---------------KVK 164
+ K YF QFG I +V + +D + +GF FIT+DSE+ V VK
Sbjct: 150 EEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVK 209
Query: 165 RAVPK 169
RA PK
Sbjct: 210 RATPK 214
Score = 39.7 bits (91), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 21/179 (11%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKR 165
RK+FVGGL+ TE + + +F ++G I + V D T R RGF FI + + EA+DKV
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 166 AVP-----KELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGY------GLRMD 214
A K++ P ++ G F+ G T + + Y + ++
Sbjct: 116 ADEHIINSKKVDPKKAKARHGKI---------FVGGLTTEISDEEIKTYFGQFGNIVEVE 166
Query: 215 GRFSPVAGGRSGFPPFGSGYGMGMIEPGLNPSFGANANFNSNLSYGRGLSPYYIGNPNR 273
F R GF F + ++ L A ++ + R
Sbjct: 167 MPFDKQKSQRKGFC-FITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGGMR 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,270,273
Number of Sequences: 539616
Number of extensions: 10971441
Number of successful extensions: 54706
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 1024
Number of HSP's that attempted gapping in prelim test: 29324
Number of HSP's gapped (non-prelim): 9854
length of query: 466
length of database: 191,569,459
effective HSP length: 121
effective length of query: 345
effective length of database: 126,275,923
effective search space: 43565193435
effective search space used: 43565193435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)