Query 012289
Match_columns 466
No_of_seqs 355 out of 2030
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 5.4E-33 1.8E-37 257.5 17.8 170 3-182 11-181 (196)
2 2cjk_A Nuclear polyadenylated 100.0 1.3E-33 4.4E-38 255.1 12.2 163 3-181 1-163 (167)
3 4f02_A Polyadenylate-binding p 100.0 2.8E-32 9.5E-37 258.6 18.7 163 4-182 14-179 (213)
4 1b7f_A Protein (SXL-lethal pro 100.0 4.1E-32 1.4E-36 245.2 18.9 160 4-179 2-166 (168)
5 1fxl_A Paraneoplastic encephal 100.0 1.1E-31 3.7E-36 241.6 20.9 155 5-175 2-159 (167)
6 2qfj_A FBP-interacting repress 100.0 5.7E-32 2E-36 254.3 17.2 175 4-183 27-204 (216)
7 3md3_A Nuclear and cytoplasmic 100.0 1E-31 3.6E-36 241.4 17.6 161 6-181 1-164 (166)
8 3nmr_A Cugbp ELAV-like family 100.0 1.7E-31 6E-36 242.3 19.3 162 3-180 1-173 (175)
9 2g4b_A Splicing factor U2AF 65 100.0 1.6E-29 5.5E-34 229.3 15.1 155 3-180 2-170 (172)
10 2yh0_A Splicing factor U2AF 65 100.0 3.8E-29 1.3E-33 231.9 17.2 173 3-182 2-192 (198)
11 3tyt_A Heterogeneous nuclear r 100.0 6.6E-29 2.2E-33 235.0 18.0 162 4-172 3-190 (205)
12 3pgw_A U1-A; protein-RNA compl 100.0 1.8E-28 6.3E-33 240.8 19.8 171 3-181 7-280 (282)
13 3smz_A Protein raver-1, ribonu 100.0 3.8E-28 1.3E-32 238.8 18.8 166 3-182 93-262 (284)
14 1fje_B Nucleolin RBD12, protei 100.0 2E-29 6.7E-34 229.9 8.7 158 3-181 11-171 (175)
15 2adc_A Polypyrimidine tract-bi 100.0 1.8E-27 6.2E-32 227.9 17.9 170 3-182 32-226 (229)
16 1qm9_A Polypyrimidine tract-bi 100.0 9.5E-28 3.2E-32 223.5 15.4 168 4-181 2-194 (198)
17 2ghp_A U4/U6 snRNA-associated 100.0 4.9E-28 1.7E-32 238.9 14.1 168 3-181 115-288 (292)
18 3sde_A Paraspeckle component 1 99.9 2.1E-27 7.3E-32 231.9 16.1 150 3-181 20-176 (261)
19 3smz_A Protein raver-1, ribonu 99.9 1.6E-26 5.5E-31 227.2 18.2 150 3-181 20-172 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 1.9E-26 6.4E-31 227.6 14.9 152 3-181 39-194 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 2E-21 6.9E-26 175.0 15.1 145 34-183 2-149 (158)
22 4f25_A Polyadenylate-binding p 99.9 1.4E-21 4.7E-26 167.7 10.0 108 4-121 4-113 (115)
23 4fxv_A ELAV-like protein 1; RN 99.8 1.6E-19 5.3E-24 151.1 11.0 80 3-82 17-98 (99)
24 2i2y_A Fusion protein consists 99.8 2.6E-19 9E-24 160.1 11.9 133 44-182 10-146 (150)
25 3s8s_A Histone-lysine N-methyl 99.8 1.5E-18 5E-23 148.0 11.3 85 3-87 4-90 (110)
26 2lxi_A RNA-binding protein 10; 99.8 2.3E-19 7.9E-24 147.6 5.9 81 5-85 1-85 (91)
27 2cqg_A TDP-43, TAR DNA-binding 99.8 2.9E-18 1E-22 143.3 10.3 84 3-86 13-96 (103)
28 2dgo_A Cytotoxic granule-assoc 99.8 6.9E-18 2.3E-22 143.9 12.5 85 3-87 13-99 (115)
29 1whw_A Hypothetical protein ri 99.7 5.6E-18 1.9E-22 140.5 11.4 84 3-86 6-91 (99)
30 2lkz_A RNA-binding protein 5; 99.7 1.2E-18 4.1E-23 144.8 7.2 80 3-82 7-94 (95)
31 1x5s_A Cold-inducible RNA-bind 99.7 2.3E-18 8E-23 143.5 9.0 85 1-85 8-94 (102)
32 2dnz_A Probable RNA-binding pr 99.7 6.1E-18 2.1E-22 139.0 11.2 83 3-85 3-87 (95)
33 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.2E-18 1.8E-22 137.0 10.2 81 3-83 4-86 (87)
34 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.4E-18 8.3E-23 143.4 8.4 85 1-85 8-94 (102)
35 2dgs_A DAZ-associated protein 99.7 7.9E-18 2.7E-22 139.7 11.0 82 3-85 8-91 (99)
36 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5.4E-18 1.9E-22 136.3 9.8 81 1-81 3-85 (85)
37 2hvz_A Splicing factor, argini 99.7 5E-18 1.7E-22 141.4 9.5 99 6-115 1-101 (101)
38 3md1_A Nuclear and cytoplasmic 99.7 1E-17 3.6E-22 134.1 10.8 80 5-84 1-82 (83)
39 2cpz_A CUG triplet repeat RNA- 99.7 5.4E-18 1.9E-22 144.7 9.6 83 3-85 23-107 (115)
40 1x4h_A RNA-binding protein 28; 99.7 9.3E-18 3.2E-22 141.9 10.8 84 3-86 13-104 (111)
41 2cq0_A Eukaryotic translation 99.7 6.2E-18 2.1E-22 141.3 9.6 83 3-85 13-97 (103)
42 2do4_A Squamous cell carcinoma 99.7 1.4E-17 4.7E-22 138.5 11.5 81 3-84 15-97 (100)
43 3lqv_A PRE-mRNA branch site pr 99.7 6.4E-18 2.2E-22 144.1 9.7 102 3-131 6-109 (115)
44 1x5u_A Splicing factor 3B subu 99.7 8.2E-18 2.8E-22 141.0 10.1 83 3-85 13-97 (105)
45 2cqd_A RNA-binding region cont 99.7 1.2E-17 4.2E-22 142.7 11.1 83 3-85 15-98 (116)
46 1x5t_A Splicing factor 3B subu 99.7 6.1E-18 2.1E-22 139.3 8.3 84 2-85 2-88 (96)
47 2dnm_A SRP46 splicing factor; 99.7 7.9E-18 2.7E-22 140.7 8.9 83 3-85 11-95 (103)
48 3p5t_L Cleavage and polyadenyl 99.7 4.9E-18 1.7E-22 138.8 7.3 81 6-86 2-86 (90)
49 3s7r_A Heterogeneous nuclear r 99.7 1.6E-17 5.5E-22 134.4 10.2 79 2-80 8-87 (87)
50 2cpf_A RNA binding motif prote 99.7 1E-17 3.4E-22 138.7 9.1 83 3-85 3-90 (98)
51 2rs2_A Musashi-1, RNA-binding 99.7 9.2E-18 3.1E-22 142.5 9.1 84 2-85 22-106 (109)
52 3ucg_A Polyadenylate-binding p 99.7 4.5E-18 1.6E-22 138.0 6.9 81 2-83 3-85 (89)
53 2dh8_A DAZ-associated protein 99.7 8.3E-18 2.8E-22 141.1 8.7 83 3-86 14-98 (105)
54 2e5h_A Zinc finger CCHC-type a 99.7 1.5E-17 5.3E-22 136.3 10.0 79 3-81 14-94 (94)
55 1p27_B RNA-binding protein 8A; 99.7 1.6E-17 5.3E-22 139.5 10.2 82 3-84 21-104 (106)
56 2cqc_A Arginine/serine-rich sp 99.7 1.7E-17 5.7E-22 136.3 10.2 80 3-82 13-94 (95)
57 3ns6_A Eukaryotic translation 99.7 4.2E-18 1.4E-22 142.3 6.7 83 4-86 5-96 (100)
58 2dgp_A Bruno-like 4, RNA bindi 99.7 9.9E-18 3.4E-22 140.7 8.7 84 2-85 10-98 (106)
59 2cph_A RNA binding motif prote 99.7 1.5E-17 5.3E-22 139.6 9.9 85 2-86 12-100 (107)
60 2x1f_A MRNA 3'-END-processing 99.7 2.3E-17 8E-22 136.2 10.8 84 5-88 2-87 (96)
61 2jrs_A RNA-binding protein 39; 99.7 2.5E-17 8.7E-22 139.6 10.6 82 3-84 24-107 (108)
62 2fy1_A RNA-binding motif prote 99.7 4.1E-17 1.4E-21 140.1 12.0 83 3-86 5-89 (116)
63 2dnh_A Bruno-like 5, RNA bindi 99.7 3.4E-17 1.2E-21 137.1 11.2 83 3-86 13-100 (105)
64 3pgw_S U1-70K; protein-RNA com 99.7 3E-18 1E-22 179.4 5.5 80 103-182 100-180 (437)
65 2d9p_A Polyadenylate-binding p 99.7 2.8E-17 9.6E-22 137.3 10.2 82 3-86 13-96 (103)
66 2div_A TRNA selenocysteine ass 99.7 2.2E-17 7.4E-22 136.9 9.0 82 3-84 7-95 (99)
67 1p1t_A Cleavage stimulation fa 99.7 9.8E-18 3.4E-22 140.1 6.9 86 3-88 6-93 (104)
68 2db1_A Heterogeneous nuclear r 99.7 1.7E-17 5.7E-22 143.0 8.5 87 3-91 15-106 (118)
69 2dng_A Eukaryotic translation 99.7 3.5E-17 1.2E-21 136.9 10.0 81 3-85 13-95 (103)
70 2do0_A HnRNP M, heterogeneous 99.7 7.7E-17 2.6E-21 137.0 12.3 82 3-85 13-96 (114)
71 1u6f_A Tcubp1, RNA-binding pro 99.7 3.8E-17 1.3E-21 143.9 10.6 84 3-86 40-125 (139)
72 2dhg_A TRNA selenocysteine ass 99.7 3.9E-17 1.3E-21 136.5 10.2 83 3-86 7-93 (104)
73 2kxn_B Transformer-2 protein h 99.7 2.6E-17 8.9E-22 144.2 9.3 82 3-84 44-127 (129)
74 2ywk_A Putative RNA-binding pr 99.7 3.5E-17 1.2E-21 134.5 9.6 79 3-82 14-94 (95)
75 2cpe_A RNA-binding protein EWS 99.7 2.5E-17 8.5E-22 140.0 8.9 84 3-86 13-106 (113)
76 2dis_A Unnamed protein product 99.7 3.5E-17 1.2E-21 138.0 9.7 84 3-86 6-95 (109)
77 1wi8_A EIF-4B, eukaryotic tran 99.7 3.2E-17 1.1E-21 137.3 9.3 82 3-86 13-97 (104)
78 1s79_A Lupus LA protein; RRM, 99.7 2.6E-17 8.8E-22 138.7 8.6 82 3-86 9-92 (103)
79 2cq3_A RNA-binding protein 9; 99.7 7E-17 2.4E-21 134.9 11.1 83 2-86 12-96 (103)
80 2la6_A RNA-binding protein FUS 99.7 6.1E-17 2.1E-21 134.4 10.7 79 3-81 11-99 (99)
81 1oo0_B CG8781-PA, drosophila Y 99.7 3.3E-17 1.1E-21 138.5 9.1 82 3-84 24-107 (110)
82 2cqi_A Nucleolysin TIAR; RNA r 99.7 6E-17 2.1E-21 135.3 10.6 81 3-85 13-95 (103)
83 3n9u_C Cleavage and polyadenyl 99.7 3.4E-17 1.2E-21 148.2 9.7 83 3-85 53-139 (156)
84 2khc_A Testis-specific RNP-typ 99.7 2.2E-17 7.4E-22 141.4 8.0 79 3-81 38-118 (118)
85 2cpy_A RNA-binding protein 12; 99.7 2.2E-17 7.6E-22 141.0 8.0 85 2-88 12-99 (114)
86 2cqp_A RNA-binding protein 12; 99.7 1.9E-17 6.6E-22 136.9 7.2 81 3-83 13-95 (98)
87 2ek1_A RNA-binding protein 12; 99.7 1.8E-17 6.1E-22 136.2 6.9 80 3-82 13-94 (95)
88 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.6E-17 2.3E-21 145.4 11.2 82 3-84 37-120 (156)
89 1x4e_A RNA binding motif, sing 99.7 2.2E-17 7.5E-22 133.0 7.2 79 3-81 3-83 (85)
90 4a8x_A RNA-binding protein wit 99.7 3.6E-17 1.2E-21 132.2 8.5 81 4-84 3-86 (88)
91 1wg5_A Heterogeneous nuclear r 99.7 4E-17 1.4E-21 137.1 9.1 82 3-85 13-96 (104)
92 1sjq_A Polypyrimidine tract-bi 99.7 3.6E-17 1.2E-21 138.3 8.6 79 2-86 13-95 (105)
93 2dgv_A HnRNP M, heterogeneous 99.7 7.9E-17 2.7E-21 131.6 10.3 81 3-85 6-88 (92)
94 2dgw_A Probable RNA-binding pr 99.7 8E-17 2.7E-21 131.5 10.2 79 3-84 8-88 (91)
95 3ex7_B RNA-binding protein 8A; 99.7 4.9E-17 1.7E-21 140.8 9.4 84 3-86 20-105 (126)
96 2lea_A Serine/arginine-rich sp 99.7 2.2E-17 7.5E-22 145.7 7.0 118 49-183 6-126 (135)
97 2hgl_A HNRPF protein, heteroge 99.7 3.9E-17 1.3E-21 144.6 8.5 84 3-88 42-130 (136)
98 4fxv_A ELAV-like protein 1; RN 99.7 4.1E-17 1.4E-21 136.3 8.1 78 104-181 18-96 (99)
99 1wez_A HnRNP H', FTP-3, hetero 99.7 3.9E-17 1.3E-21 137.2 7.9 79 3-84 13-93 (102)
100 3ulh_A THO complex subunit 4; 99.7 1E-16 3.5E-21 134.7 10.5 78 3-81 27-106 (107)
101 2dnn_A RNA-binding protein 12; 99.7 2.5E-17 8.4E-22 140.3 6.6 80 3-85 14-95 (109)
102 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.4E-17 8.4E-22 130.0 6.0 76 6-81 1-77 (77)
103 2dgx_A KIAA0430 protein; RRM d 99.7 7.4E-17 2.5E-21 133.5 9.2 80 3-85 7-92 (96)
104 2cqd_A RNA-binding region cont 99.7 1.5E-16 5.1E-21 135.9 11.3 85 99-183 11-95 (116)
105 1x4b_A Heterogeneous nuclear r 99.7 7.4E-17 2.5E-21 137.8 9.1 81 5-85 27-108 (116)
106 2mss_A Protein (musashi1); RNA 99.7 4.1E-17 1.4E-21 128.3 6.6 73 7-80 1-75 (75)
107 2cq4_A RNA binding motif prote 99.7 5E-17 1.7E-21 138.4 7.4 82 4-86 24-107 (114)
108 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-16 3.6E-21 144.0 9.9 80 103-182 37-117 (156)
109 2dha_A FLJ20171 protein; RRM d 99.7 4.1E-17 1.4E-21 141.9 6.8 87 3-90 21-112 (123)
110 3s8s_A Histone-lysine N-methyl 99.7 9.2E-17 3.2E-21 136.8 8.8 80 103-182 4-84 (110)
111 2dnl_A Cytoplasmic polyadenyla 99.7 1.2E-16 4.1E-21 136.5 9.0 81 3-84 6-89 (114)
112 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6E-17 2E-21 135.0 6.8 80 3-84 17-99 (100)
113 1x4a_A Splicing factor, argini 99.7 1.8E-16 6.3E-21 133.8 9.9 80 3-85 20-101 (109)
114 2kt5_A RNA and export factor-b 99.7 2.1E-16 7.3E-21 136.6 10.5 82 3-85 33-116 (124)
115 1wel_A RNA-binding protein 12; 99.7 2.8E-17 9.4E-22 142.5 4.6 82 3-85 23-106 (124)
116 1x5o_A RNA binding motif, sing 99.7 2.7E-16 9.4E-21 133.7 10.8 80 3-83 23-112 (114)
117 2lmi_A GRSF-1, G-rich sequence 99.7 4.5E-17 1.5E-21 137.6 5.7 85 3-89 9-98 (107)
118 2m2b_A RNA-binding protein 10; 99.7 6.8E-17 2.3E-21 141.4 6.8 82 3-85 21-110 (131)
119 2cpi_A CCR4-NOT transcription 99.7 1E-16 3.6E-21 136.2 7.8 82 3-84 13-102 (111)
120 2ad9_A Polypyrimidine tract-bi 99.7 2.3E-16 7.8E-21 136.4 9.8 78 3-86 29-110 (119)
121 2kn4_A Immunoglobulin G-bindin 99.7 2E-16 6.8E-21 142.2 9.8 82 4-85 69-152 (158)
122 2cq1_A PTB-like protein L; RRM 99.7 2.2E-16 7.6E-21 132.6 9.2 77 3-85 13-93 (101)
123 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.6E-16 8.9E-21 138.2 10.0 78 3-80 61-140 (140)
124 2ki2_A SS-DNA binding protein 99.7 3.1E-17 1E-21 133.6 3.7 80 6-86 2-83 (90)
125 1wex_A Hypothetical protein (r 99.7 3.9E-16 1.3E-20 131.7 10.6 77 3-85 13-93 (104)
126 2dgs_A DAZ-associated protein 99.7 5.7E-16 1.9E-20 128.4 11.4 82 101-182 6-87 (99)
127 1u6f_A Tcubp1, RNA-binding pro 99.7 6.9E-16 2.4E-20 135.8 12.5 84 100-183 37-121 (139)
128 2lea_A Serine/arginine-rich sp 99.7 7.5E-17 2.6E-21 142.2 6.2 83 3-85 45-129 (135)
129 3q2s_C Cleavage and polyadenyl 99.7 1.3E-16 4.3E-21 153.2 8.1 81 4-84 67-151 (229)
130 2lkz_A RNA-binding protein 5; 99.7 4.8E-17 1.6E-21 135.1 4.5 80 103-182 7-93 (95)
131 2jwn_A Embryonic polyadenylate 99.6 2.7E-16 9.1E-21 135.8 9.2 80 4-84 35-116 (124)
132 3s7r_A Heterogeneous nuclear r 99.6 1.6E-16 5.6E-21 128.4 7.3 79 101-179 7-85 (87)
133 2fc9_A NCL protein; structure 99.6 3.2E-16 1.1E-20 130.4 9.2 80 2-85 12-93 (101)
134 1x4c_A Splicing factor, argini 99.6 5.4E-16 1.8E-20 131.0 10.6 76 3-85 13-95 (108)
135 2hgm_A HNRPF protein, heteroge 99.6 9.4E-17 3.2E-21 140.3 6.0 80 3-84 40-122 (126)
136 2dnz_A Probable RNA-binding pr 99.6 6.1E-16 2.1E-20 127.0 10.4 80 103-182 3-83 (95)
137 2err_A Ataxin-2-binding protei 99.6 2.6E-16 8.8E-21 133.4 8.3 81 2-84 26-108 (109)
138 1iqt_A AUF1, heterogeneous nuc 99.6 6.9E-17 2.4E-21 126.8 4.2 74 7-80 1-75 (75)
139 2cpz_A CUG triplet repeat RNA- 99.6 7.7E-16 2.6E-20 131.2 11.0 82 102-183 22-104 (115)
140 2lxi_A RNA-binding protein 10; 99.6 9.8E-17 3.3E-21 131.8 5.2 78 105-182 1-81 (91)
141 3q2s_C Cleavage and polyadenyl 99.6 1.9E-16 6.4E-21 152.0 8.0 78 104-181 67-147 (229)
142 2dnq_A RNA-binding protein 4B; 99.6 7.4E-16 2.5E-20 125.6 10.3 75 3-85 6-82 (90)
143 2div_A TRNA selenocysteine ass 99.6 8E-16 2.7E-20 127.4 10.5 81 102-182 6-92 (99)
144 3r27_A HnRNP L, heterogeneous 99.6 7.5E-16 2.6E-20 129.0 10.4 76 3-84 19-98 (100)
145 2cqc_A Arginine/serine-rich sp 99.6 6.6E-16 2.3E-20 126.6 9.9 82 100-181 10-92 (95)
146 2cq0_A Eukaryotic translation 99.6 7E-16 2.4E-20 128.8 10.2 82 101-182 11-93 (103)
147 2fc8_A NCL protein; structure 99.6 4.2E-16 1.4E-20 129.8 8.8 80 3-85 13-94 (102)
148 2dgp_A Bruno-like 4, RNA bindi 99.6 6.6E-16 2.3E-20 129.5 10.0 83 101-183 9-95 (106)
149 1x5u_A Splicing factor 3B subu 99.6 1E-15 3.4E-20 128.2 11.1 84 100-183 10-94 (105)
150 1x4d_A Matrin 3; structural ge 99.6 3.2E-16 1.1E-20 131.9 7.9 76 3-84 13-93 (102)
151 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3.2E-16 1.1E-20 142.5 8.4 131 52-182 11-150 (165)
152 2wbr_A GW182, gawky, LD47780P; 99.6 4E-16 1.4E-20 127.1 8.0 71 5-81 7-79 (89)
153 1x4h_A RNA-binding protein 28; 99.6 1E-15 3.5E-20 129.3 10.9 84 100-183 10-100 (111)
154 2dhg_A TRNA selenocysteine ass 99.6 3E-15 1E-19 125.0 13.5 80 102-182 6-88 (104)
155 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.2E-16 2.1E-20 140.6 10.1 84 3-86 70-155 (165)
156 1whw_A Hypothetical protein ri 99.6 1E-15 3.6E-20 126.7 10.6 81 103-183 6-87 (99)
157 2xs2_A Deleted in azoospermia- 99.6 9.9E-17 3.4E-21 133.7 4.3 82 3-85 7-88 (102)
158 2dnm_A SRP46 splicing factor; 99.6 4.4E-16 1.5E-20 130.0 8.2 84 100-183 8-92 (103)
159 1x5s_A Cold-inducible RNA-bind 99.6 6E-16 2.1E-20 128.8 9.0 81 102-182 9-90 (102)
160 3d2w_A TAR DNA-binding protein 99.6 3.7E-16 1.3E-20 127.8 7.5 78 3-85 9-86 (89)
161 2hgn_A Heterogeneous nuclear r 99.6 1.2E-16 4.3E-21 141.8 4.9 118 48-181 2-120 (139)
162 2dgu_A Heterogeneous nuclear r 99.6 1E-15 3.4E-20 128.1 10.2 77 3-87 9-87 (103)
163 2dh8_A DAZ-associated protein 99.6 1.2E-15 4E-20 127.9 10.6 82 101-182 12-93 (105)
164 1why_A Hypothetical protein ri 99.6 8.3E-16 2.8E-20 127.0 9.6 76 3-84 15-94 (97)
165 2nlw_A Eukaryotic translation 99.6 6.2E-16 2.1E-20 130.1 8.9 79 4-84 14-101 (105)
166 2cph_A RNA binding motif prote 99.6 1.3E-15 4.4E-20 127.8 10.8 84 100-183 10-96 (107)
167 2lcw_A RNA-binding protein FUS 99.4 2.4E-17 8.2E-22 140.9 0.0 85 2-86 4-98 (116)
168 1fj7_A Nucleolin RBD1, protein 99.6 7E-17 2.4E-21 134.4 2.7 81 3-85 15-97 (101)
169 2dnh_A Bruno-like 5, RNA bindi 99.6 2.4E-15 8.3E-20 125.8 11.9 80 103-183 13-96 (105)
170 2dgo_A Cytotoxic granule-assoc 99.6 1.9E-15 6.6E-20 128.6 11.4 83 101-183 11-94 (115)
171 2hgn_A Heterogeneous nuclear r 99.6 1.4E-16 4.8E-21 141.5 4.4 80 3-85 44-125 (139)
172 2krb_A Eukaryotic translation 99.6 4.5E-16 1.5E-20 124.4 6.9 71 5-77 1-80 (81)
173 2e5h_A Zinc finger CCHC-type a 99.6 7.3E-16 2.5E-20 126.3 8.2 80 101-180 12-92 (94)
174 1x4f_A Matrin 3; structural ge 99.6 4.7E-16 1.6E-20 133.0 7.1 78 3-86 23-105 (112)
175 1wez_A HnRNP H', FTP-3, hetero 99.6 6.6E-16 2.3E-20 129.6 8.0 77 102-180 12-88 (102)
176 2la6_A RNA-binding protein FUS 99.6 1.6E-15 5.6E-20 125.7 10.2 81 100-180 8-97 (99)
177 1x4g_A Nucleolysin TIAR; struc 99.6 1.2E-15 4.1E-20 128.9 9.4 77 3-85 23-101 (109)
178 2cpj_A Non-POU domain-containi 99.6 8.5E-16 2.9E-20 127.5 8.4 77 3-85 13-91 (99)
179 3mdf_A Peptidyl-prolyl CIS-tra 99.6 6.9E-16 2.4E-20 123.9 7.4 78 103-180 5-83 (85)
180 2cpf_A RNA binding motif prote 99.6 1.5E-15 5.1E-20 125.5 9.4 81 103-183 3-87 (98)
181 3p5t_L Cleavage and polyadenyl 99.6 8.6E-16 2.9E-20 125.4 7.7 77 106-182 2-81 (90)
182 2la4_A Nuclear and cytoplasmic 99.6 1E-15 3.5E-20 127.3 8.3 75 3-83 25-101 (101)
183 2kxn_B Transformer-2 protein h 99.6 2.8E-15 9.7E-20 131.1 11.5 83 101-183 42-125 (129)
184 1x5t_A Splicing factor 3B subu 99.6 9.5E-16 3.3E-20 126.1 7.8 79 104-182 4-84 (96)
185 2do4_A Squamous cell carcinoma 99.6 2.8E-15 9.4E-20 124.5 10.6 80 102-182 14-94 (100)
186 2cpx_A Hypothetical protein FL 99.6 2.4E-16 8.4E-21 134.1 4.3 84 3-86 23-108 (115)
187 1wf0_A TDP-43, TAR DNA-binding 99.6 3.7E-16 1.3E-20 126.9 5.1 78 3-85 3-80 (88)
188 2d9p_A Polyadenylate-binding p 99.6 3.3E-15 1.1E-19 124.6 11.1 81 101-183 11-92 (103)
189 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.3E-16 1.8E-20 122.2 5.8 74 106-179 1-74 (77)
190 2cqb_A Peptidyl-prolyl CIS-tra 99.6 8.4E-16 2.9E-20 127.9 7.3 82 102-183 9-91 (102)
191 2cqg_A TDP-43, TAR DNA-binding 99.6 3.6E-15 1.2E-19 124.4 11.2 81 102-183 12-92 (103)
192 1x4e_A RNA binding motif, sing 99.6 7.9E-16 2.7E-20 123.8 6.8 78 103-180 3-81 (85)
193 2e5j_A Methenyltetrahydrofolat 99.6 1.6E-15 5.4E-20 125.4 8.7 77 3-84 17-95 (97)
194 2dng_A Eukaryotic translation 99.6 2.4E-15 8.3E-20 125.6 10.0 79 102-182 12-91 (103)
195 2dgt_A RNA-binding protein 30; 99.6 2.3E-15 7.9E-20 123.1 9.5 75 3-85 8-84 (92)
196 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.2E-15 4.3E-20 122.9 7.7 78 104-181 5-83 (87)
197 2a3j_A U1 small nuclear ribonu 99.6 2.1E-15 7.1E-20 131.9 9.7 83 3-88 27-115 (127)
198 2ywk_A Putative RNA-binding pr 99.6 2E-15 6.7E-20 123.9 9.0 79 102-181 13-92 (95)
199 2jvr_A Nucleolar protein 3; RN 99.6 1.1E-15 3.6E-20 130.6 7.7 77 3-83 26-105 (111)
200 2cpe_A RNA-binding protein EWS 99.6 2.2E-15 7.6E-20 127.8 9.6 83 101-183 11-102 (113)
201 1s79_A Lupus LA protein; RRM, 99.6 2.3E-15 7.8E-20 126.7 9.5 77 103-180 9-85 (103)
202 2khc_A Testis-specific RNP-typ 99.6 1.8E-15 6.1E-20 129.4 8.9 80 101-180 36-116 (118)
203 3md1_A Nuclear and cytoplasmic 99.6 1.9E-15 6.6E-20 120.7 8.4 77 105-181 1-78 (83)
204 2f3j_A RNA and export factor b 99.6 1.7E-15 5.8E-20 139.7 9.2 81 4-85 87-169 (177)
205 1p27_B RNA-binding protein 8A; 99.6 2.7E-15 9.2E-20 125.7 9.6 79 103-181 21-100 (106)
206 2fy1_A RNA-binding motif prote 99.6 5.4E-15 1.9E-19 126.8 11.7 80 103-183 5-85 (116)
207 1nu4_A U1A RNA binding domain; 99.6 1.1E-15 3.9E-20 125.8 7.2 82 3-87 6-93 (97)
208 1wg5_A Heterogeneous nuclear r 99.6 2.4E-15 8.1E-20 126.3 9.2 80 101-181 11-91 (104)
209 2jrs_A RNA-binding protein 39; 99.6 5E-15 1.7E-19 125.4 11.2 82 101-182 22-104 (108)
210 2cqp_A RNA-binding protein 12; 99.6 1.3E-15 4.6E-20 125.8 7.4 80 102-181 12-92 (98)
211 1wi8_A EIF-4B, eukaryotic tran 99.6 2.1E-15 7.1E-20 126.2 8.6 79 103-183 13-93 (104)
212 2ytc_A PRE-mRNA-splicing facto 99.6 2.6E-15 8.8E-20 120.7 8.8 73 3-81 10-85 (85)
213 2mss_A Protein (musashi1); RNA 99.6 1.2E-15 4.3E-20 119.7 6.8 74 107-180 1-74 (75)
214 3ns6_A Eukaryotic translation 99.6 9.2E-16 3.2E-20 128.0 6.3 77 104-180 5-89 (100)
215 1sjq_A Polypyrimidine tract-bi 99.6 2.1E-15 7.3E-20 127.4 8.6 76 102-183 13-91 (105)
216 2e5g_A U6 snRNA-specific termi 99.6 3.5E-15 1.2E-19 122.6 9.5 77 3-85 6-84 (94)
217 2jvo_A Nucleolar protein 3; nu 99.6 3.3E-15 1.1E-19 126.6 9.5 75 3-85 29-105 (108)
218 1x4b_A Heterogeneous nuclear r 99.6 1.1E-15 3.7E-20 130.5 6.6 81 103-183 25-105 (116)
219 2rs2_A Musashi-1, RNA-binding 99.6 1.3E-15 4.5E-20 129.1 6.7 80 103-182 23-102 (109)
220 2ek1_A RNA-binding protein 12; 99.6 9.9E-16 3.4E-20 125.7 5.8 78 103-180 13-91 (95)
221 2dnp_A RNA-binding protein 14; 99.6 2.9E-15 1E-19 122.0 8.4 74 3-84 7-82 (90)
222 2do0_A HnRNP M, heterogeneous 99.6 9.4E-15 3.2E-19 124.0 11.8 80 102-182 12-92 (114)
223 2cpd_A Apobec-1 stimulating pr 99.6 7.3E-15 2.5E-19 121.8 10.7 75 3-85 13-91 (99)
224 1whx_A Hypothetical protein ri 99.6 2E-15 6.7E-20 128.5 7.3 75 3-83 8-84 (111)
225 1iqt_A AUF1, heterogeneous nuc 99.6 1E-15 3.4E-20 120.1 5.0 73 107-179 1-73 (75)
226 1fjc_A Nucleolin RBD2, protein 99.6 1.5E-15 5.2E-20 125.0 6.2 77 3-84 14-92 (96)
227 2e44_A Insulin-like growth fac 99.6 2.6E-15 8.8E-20 123.6 7.4 77 4-84 14-93 (96)
228 1p1t_A Cleavage stimulation fa 99.6 2.6E-15 8.9E-20 125.3 7.5 80 103-182 6-86 (104)
229 2cq3_A RNA-binding protein 9; 99.6 9E-15 3.1E-19 122.0 10.7 82 100-183 10-92 (103)
230 2x1f_A MRNA 3'-END-processing 99.6 2.8E-15 9.5E-20 123.6 7.4 78 105-182 2-80 (96)
231 3ucg_A Polyadenylate-binding p 99.6 3.6E-15 1.2E-19 120.7 8.0 78 104-182 5-83 (89)
232 1oo0_B CG8781-PA, drosophila Y 99.6 2.8E-15 9.5E-20 126.6 7.6 80 102-181 23-103 (110)
233 2kvi_A Nuclear polyadenylated 99.6 3.7E-15 1.3E-19 123.1 8.1 76 3-86 8-86 (96)
234 1wg1_A KIAA1579 protein, homol 99.6 4E-15 1.4E-19 120.9 8.2 75 3-84 3-79 (88)
235 2dgv_A HnRNP M, heterogeneous 99.6 1.1E-14 3.7E-19 118.7 10.8 78 103-182 6-84 (92)
236 1x4a_A Splicing factor, argini 99.6 7.7E-15 2.6E-19 123.8 10.3 81 100-183 17-98 (109)
237 2hgm_A HNRPF protein, heteroge 99.6 2.8E-15 9.7E-20 130.9 7.7 77 102-180 39-117 (126)
238 2qfj_A FBP-interacting repress 99.6 8.7E-15 3E-19 136.8 11.6 83 3-85 123-207 (216)
239 3ulh_A THO complex subunit 4; 99.6 4.1E-15 1.4E-19 124.8 8.3 79 101-180 25-104 (107)
240 2xnq_A Nuclear polyadenylated 99.6 8.2E-15 2.8E-19 121.6 10.1 73 3-83 20-95 (97)
241 2hgl_A HNRPF protein, heteroge 99.6 1.9E-15 6.6E-20 133.6 6.4 79 101-180 40-121 (136)
242 4f25_A Polyadenylate-binding p 99.6 3.5E-15 1.2E-19 127.6 7.8 76 104-181 4-80 (115)
243 3md3_A Nuclear and cytoplasmic 99.6 9.6E-15 3.3E-19 130.3 11.0 80 3-82 85-166 (166)
244 2m2b_A RNA-binding protein 10; 99.6 3.4E-15 1.2E-19 130.5 7.8 80 102-182 20-106 (131)
245 2dnn_A RNA-binding protein 12; 99.6 2.4E-15 8.1E-20 128.0 6.3 77 102-180 13-89 (109)
246 2cqi_A Nucleolysin TIAR; RNA r 99.6 9.8E-15 3.4E-19 121.8 10.0 81 101-183 11-92 (103)
247 2cqh_A IGF-II mRNA-binding pro 99.6 2.8E-15 9.6E-20 122.7 6.5 76 3-85 6-85 (93)
248 3ex7_B RNA-binding protein 8A; 99.6 4.9E-15 1.7E-19 128.1 8.3 81 102-182 19-100 (126)
249 1wf1_A RNA-binding protein RAL 99.6 4.7E-15 1.6E-19 125.4 7.9 73 4-84 26-101 (110)
250 1l3k_A Heterogeneous nuclear r 99.6 8.3E-15 2.8E-19 134.9 10.3 84 4-87 103-187 (196)
251 1x5o_A RNA binding motif, sing 99.6 1.2E-14 4.2E-19 123.4 10.5 70 102-172 22-91 (114)
252 3beg_B Splicing factor, argini 99.6 3.7E-15 1.3E-19 127.6 7.2 74 3-83 14-94 (115)
253 2i2y_A Fusion protein consists 99.6 5.9E-15 2E-19 131.7 8.8 77 3-84 71-149 (150)
254 3n9u_C Cleavage and polyadenyl 99.6 6.3E-15 2.2E-19 133.2 8.7 78 104-181 54-134 (156)
255 4f02_A Polyadenylate-binding p 99.6 8.2E-15 2.8E-19 138.2 9.6 83 4-88 102-186 (213)
256 2cjk_A Nuclear polyadenylated 99.6 5.4E-15 1.9E-19 132.6 8.0 80 4-84 86-167 (167)
257 2dis_A Unnamed protein product 99.6 9.1E-15 3.1E-19 123.1 8.8 81 103-183 6-91 (109)
258 2cpy_A RNA-binding protein 12; 99.5 3E-15 1E-19 127.7 5.7 79 102-181 12-91 (114)
259 2yh0_A Splicing factor U2AF 65 99.5 1.2E-14 4.1E-19 134.0 9.9 83 3-85 112-196 (198)
260 1sjr_A Polypyrimidine tract-bi 99.5 1.5E-14 5.1E-19 131.5 10.2 77 5-85 46-126 (164)
261 1x5p_A Negative elongation fac 99.5 2.8E-14 9.6E-19 117.9 10.9 75 3-85 13-89 (97)
262 2krb_A Eukaryotic translation 99.5 1E-14 3.6E-19 116.4 7.9 71 106-178 2-80 (81)
263 1wel_A RNA-binding protein 12; 99.5 5.4E-15 1.8E-19 127.9 6.7 79 102-180 22-100 (124)
264 4a8x_A RNA-binding protein wit 99.5 5.4E-15 1.8E-19 119.3 6.2 78 104-181 3-82 (88)
265 1wex_A Hypothetical protein (r 99.5 1.7E-14 5.8E-19 121.7 9.4 76 102-183 12-90 (104)
266 1x4d_A Matrin 3; structural ge 99.5 4.8E-15 1.6E-19 124.7 6.0 75 103-183 13-91 (102)
267 2dgw_A Probable RNA-binding pr 99.5 1.4E-14 4.6E-19 118.1 8.5 77 102-181 7-84 (91)
268 2dgx_A KIAA0430 protein; RRM d 99.5 1.1E-14 3.7E-19 120.3 7.9 77 103-182 7-88 (96)
269 2dha_A FLJ20171 protein; RRM d 99.5 6.4E-15 2.2E-19 128.0 6.6 76 104-180 22-101 (123)
270 2ad9_A Polypyrimidine tract-bi 99.5 1E-14 3.6E-19 126.0 7.9 75 103-183 29-106 (119)
271 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.3E-14 4.3E-19 127.3 8.6 80 101-180 59-139 (140)
272 2g4b_A Splicing factor U2AF 65 99.5 1.7E-14 5.8E-19 130.0 9.6 78 4-81 93-172 (172)
273 2db1_A Heterogeneous nuclear r 99.5 5.6E-15 1.9E-19 127.1 5.9 78 102-180 14-94 (118)
274 2cq4_A RNA binding motif prote 99.5 5.4E-15 1.9E-19 125.7 5.7 77 103-180 23-100 (114)
275 2j8a_A Histone-lysine N-methyl 99.5 8.9E-15 3.1E-19 127.1 7.1 78 6-83 3-96 (136)
276 1x4c_A Splicing factor, argini 99.5 2.5E-14 8.4E-19 120.8 9.6 75 101-182 11-91 (108)
277 2fc8_A NCL protein; structure 99.5 2.1E-14 7.3E-19 119.4 9.1 80 100-182 10-90 (102)
278 2cpi_A CCR4-NOT transcription 99.5 1.4E-14 4.9E-19 122.9 8.1 81 103-183 13-100 (111)
279 2ki2_A SS-DNA binding protein 99.5 6E-15 2.1E-19 119.9 5.5 76 106-182 2-78 (90)
280 2cq1_A PTB-like protein L; RRM 99.5 2E-14 7E-19 120.5 8.9 76 102-183 12-90 (101)
281 2lmi_A GRSF-1, G-rich sequence 99.5 9.8E-15 3.3E-19 123.1 6.9 79 102-181 8-89 (107)
282 3egn_A RNA-binding protein 40; 99.5 3E-15 1E-19 132.6 3.7 84 3-86 43-133 (143)
283 2jwn_A Embryonic polyadenylate 99.5 1.4E-14 4.9E-19 124.8 7.8 78 104-182 35-113 (124)
284 2kt5_A RNA and export factor-b 99.5 2.6E-14 8.8E-19 123.4 9.4 80 101-181 31-111 (124)
285 3pgw_S U1-70K; protein-RNA com 99.5 2.1E-14 7.2E-19 150.3 10.5 82 4-85 101-184 (437)
286 2j76_E EIF-4B, EIF4B, eukaryot 99.5 8.8E-15 3E-19 121.8 5.9 78 102-181 16-95 (100)
287 3r27_A HnRNP L, heterogeneous 99.5 1.1E-14 3.6E-19 122.0 6.3 74 103-182 19-95 (100)
288 2dnq_A RNA-binding protein 4B; 99.5 6.8E-14 2.3E-18 113.8 10.7 74 102-183 5-79 (90)
289 2cpx_A Hypothetical protein FL 99.5 1.5E-14 5E-19 123.0 6.9 81 103-183 23-104 (115)
290 1b7f_A Protein (SXL-lethal pro 99.5 5.7E-14 1.9E-18 125.9 11.1 78 3-80 87-168 (168)
291 3zzy_A Polypyrimidine tract-bi 99.5 5E-14 1.7E-18 123.4 10.2 75 6-85 29-108 (130)
292 2fc9_A NCL protein; structure 99.5 2.8E-14 9.5E-19 118.6 8.0 79 101-183 11-90 (101)
293 2hzc_A Splicing factor U2AF 65 99.5 2.5E-14 8.4E-19 115.2 7.3 70 3-79 4-86 (87)
294 2lcw_A RNA-binding protein FUS 99.2 1.8E-15 6E-20 129.3 0.0 80 103-182 5-93 (116)
295 2cpj_A Non-POU domain-containi 99.5 6E-14 2.1E-18 116.2 9.0 77 101-183 11-88 (99)
296 2voo_A Lupus LA protein; RNA-b 99.5 6.2E-14 2.1E-18 131.0 10.2 79 5-84 109-188 (193)
297 2ytc_A PRE-mRNA-splicing facto 99.5 6.6E-14 2.3E-18 112.3 8.9 75 100-180 7-83 (85)
298 1fxl_A Paraneoplastic encephal 99.5 8.3E-14 2.8E-18 124.3 10.5 77 4-80 87-167 (167)
299 1fj7_A Nucleolin RBD1, protein 99.5 1.5E-14 5.1E-19 120.2 5.2 79 103-182 15-93 (101)
300 1why_A Hypothetical protein ri 99.5 8.6E-14 2.9E-18 114.8 9.7 75 102-182 14-91 (97)
301 2dgu_A Heterogeneous nuclear r 99.5 9.5E-14 3.3E-18 115.9 9.7 74 102-183 8-82 (103)
302 2jvr_A Nucleolar protein 3; RN 99.5 1.9E-14 6.7E-19 122.8 5.6 76 103-182 26-103 (111)
303 2cq2_A Hypothetical protein LO 99.5 3.4E-14 1.2E-18 121.7 7.1 75 3-83 23-106 (114)
304 2nlw_A Eukaryotic translation 99.5 5.3E-14 1.8E-18 118.2 7.9 76 104-181 14-97 (105)
305 2err_A Ataxin-2-binding protei 99.5 3.3E-14 1.1E-18 120.3 6.7 78 102-181 26-104 (109)
306 2e5i_A Heterogeneous nuclear r 99.5 1.7E-13 5.7E-18 119.2 10.9 73 7-85 27-104 (124)
307 3nmr_A Cugbp ELAV-like family 99.5 1.1E-13 3.7E-18 124.7 10.2 77 4-81 94-175 (175)
308 2a3j_A U1 small nuclear ribonu 99.5 1E-13 3.5E-18 121.1 9.5 77 103-182 27-108 (127)
309 2xs2_A Deleted in azoospermia- 99.5 2.2E-14 7.5E-19 119.4 5.0 74 103-178 7-80 (102)
310 2wbr_A GW182, gawky, LD47780P; 99.5 3.1E-14 1E-18 116.0 5.6 72 104-181 6-78 (89)
311 2pe8_A Splicing factor 45; RRM 99.5 1.5E-13 5.2E-18 116.0 9.9 82 2-83 5-94 (105)
312 1x4f_A Matrin 3; structural ge 99.5 8.1E-14 2.8E-18 119.1 8.0 75 102-182 22-100 (112)
313 1x4g_A Nucleolysin TIAR; struc 99.5 1.2E-13 3.9E-18 116.6 8.7 76 103-184 23-99 (109)
314 2hvz_A Splicing factor, argini 99.5 9.1E-14 3.1E-18 115.4 7.8 73 106-183 1-74 (101)
315 2e5j_A Methenyltetrahydrofolat 99.5 1.8E-13 6.1E-18 113.0 9.5 76 102-182 16-92 (97)
316 2diu_A KIAA0430 protein; struc 99.5 1.7E-13 5.9E-18 112.7 9.0 74 4-87 7-88 (96)
317 2bz2_A Negative elongation fac 99.5 1.4E-13 4.8E-18 119.0 9.0 76 3-86 37-114 (121)
318 2e5g_A U6 snRNA-specific termi 99.5 3.4E-13 1.1E-17 110.7 10.7 74 103-182 6-80 (94)
319 2la4_A Nuclear and cytoplasmic 99.5 1.5E-13 5.1E-18 114.1 8.5 74 103-182 25-99 (101)
320 2dnl_A Cytoplasmic polyadenyla 99.5 7.2E-14 2.4E-18 119.1 6.6 65 103-168 6-73 (114)
321 3beg_B Splicing factor, argini 99.4 1.2E-13 4.1E-18 118.1 7.7 68 103-177 14-82 (115)
322 2f3j_A RNA and export factor b 99.4 1.4E-13 4.9E-18 126.8 8.7 80 101-181 84-164 (177)
323 2dgt_A RNA-binding protein 30; 99.4 1.8E-13 6E-18 111.8 8.3 74 101-182 6-80 (92)
324 2dnp_A RNA-binding protein 14; 99.4 1.7E-13 5.8E-18 111.4 7.9 73 102-182 6-79 (90)
325 3u1l_A PRE-mRNA-splicing facto 99.4 1.9E-13 6.3E-18 131.8 9.4 78 3-86 132-232 (240)
326 2cpd_A Apobec-1 stimulating pr 99.4 3.9E-13 1.3E-17 111.2 9.8 74 102-183 12-88 (99)
327 3lqv_A PRE-mRNA branch site pr 99.4 2.2E-13 7.4E-18 115.8 8.4 76 103-181 6-82 (115)
328 1wf1_A RNA-binding protein RAL 99.4 2.7E-13 9.2E-18 114.5 8.9 71 104-182 26-98 (110)
329 1fje_B Nucleolin RBD12, protei 99.4 2.2E-13 7.4E-18 123.4 8.8 75 4-83 98-174 (175)
330 2e44_A Insulin-like growth fac 99.4 2.5E-13 8.7E-18 111.5 8.1 79 100-182 10-90 (96)
331 2d9o_A DNAJ (HSP40) homolog, s 99.4 6.5E-13 2.2E-17 111.2 10.5 78 3-85 8-92 (100)
332 2cqh_A IGF-II mRNA-binding pro 99.4 1.5E-13 5E-18 112.4 6.3 75 102-183 5-82 (93)
333 2kvi_A Nuclear polyadenylated 99.4 2.1E-13 7.3E-18 112.4 7.2 72 103-182 8-81 (96)
334 2jvo_A Nucleolar protein 3; nu 99.4 2.3E-13 7.9E-18 115.1 7.6 74 101-182 27-101 (108)
335 2voo_A Lupus LA protein; RNA-b 99.4 1.5E-13 5E-18 128.4 6.9 77 104-181 108-184 (193)
336 1sjr_A Polypyrimidine tract-bi 99.4 6.8E-13 2.3E-17 120.5 10.0 78 102-183 43-123 (164)
337 2j8a_A Histone-lysine N-methyl 99.4 1.4E-13 4.9E-18 119.6 5.1 77 106-182 3-94 (136)
338 1fjc_A Nucleolin RBD2, protein 99.4 2.1E-13 7.3E-18 112.0 5.7 75 102-181 13-88 (96)
339 1x5p_A Negative elongation fac 99.4 1.5E-12 5.3E-17 107.3 10.5 74 102-183 12-86 (97)
340 1whx_A Hypothetical protein ri 99.4 2.5E-13 8.5E-18 115.4 5.7 72 104-181 9-81 (111)
341 1nu4_A U1A RNA binding domain; 99.4 1.7E-13 5.9E-18 112.7 4.5 78 102-182 5-87 (97)
342 2xnq_A Nuclear polyadenylated 99.4 6.8E-13 2.3E-17 109.9 7.8 72 102-181 19-92 (97)
343 1wf0_A TDP-43, TAR DNA-binding 99.4 1.3E-13 4.4E-18 111.7 3.2 73 104-182 4-76 (88)
344 3d2w_A TAR DNA-binding protein 99.4 2.1E-13 7.2E-18 111.3 3.6 71 102-180 8-80 (89)
345 2dit_A HIV TAT specific factor 99.4 1.8E-12 6.1E-17 110.1 9.5 80 3-86 13-105 (112)
346 1wg1_A KIAA1579 protein, homol 99.4 5.7E-13 1.9E-17 108.1 5.8 72 104-182 4-76 (88)
347 2bz2_A Negative elongation fac 99.4 1.3E-12 4.3E-17 113.0 8.0 74 102-183 36-110 (121)
348 2cq2_A Hypothetical protein LO 99.3 8.6E-13 2.9E-17 113.0 6.5 63 103-171 23-87 (114)
349 3pgw_A U1-A; protein-RNA compl 99.3 2.4E-12 8.2E-17 125.8 10.4 73 4-81 206-281 (282)
350 2hzc_A Splicing factor U2AF 65 99.3 9.8E-13 3.4E-17 105.8 6.3 69 103-178 4-84 (87)
351 3sde_A Paraspeckle component 1 99.3 2.6E-12 9E-17 124.8 9.7 82 3-85 94-181 (261)
352 2e5i_A Heterogeneous nuclear r 99.3 3.4E-12 1.2E-16 110.9 9.3 75 102-182 22-100 (124)
353 3zzy_A Polypyrimidine tract-bi 99.3 1.9E-12 6.4E-17 113.4 7.2 75 103-182 26-104 (130)
354 2diu_A KIAA0430 protein; struc 99.3 3.7E-12 1.3E-16 104.8 8.2 71 104-184 7-84 (96)
355 3egn_A RNA-binding protein 40; 99.3 5.1E-13 1.8E-17 118.1 3.2 81 103-183 43-129 (143)
356 3tyt_A Heterogeneous nuclear r 99.3 2.1E-12 7.1E-17 121.6 7.4 75 4-80 122-204 (205)
357 3v4m_A Splicing factor U2AF 65 99.3 3.4E-12 1.1E-16 107.7 7.7 82 3-84 3-98 (105)
358 2pe8_A Splicing factor 45; RRM 99.3 4.3E-12 1.5E-16 107.1 8.2 78 103-180 6-90 (105)
359 1qm9_A Polypyrimidine tract-bi 99.3 3.7E-12 1.3E-16 117.8 8.3 75 4-83 119-197 (198)
360 3ue2_A Poly(U)-binding-splicin 99.3 6.2E-12 2.1E-16 108.4 8.8 79 4-82 19-108 (118)
361 2adc_A Polypyrimidine tract-bi 99.3 7.6E-12 2.6E-16 119.1 10.2 74 5-83 151-228 (229)
362 1jmt_A Splicing factor U2AF 35 99.3 2.5E-12 8.7E-17 108.2 4.5 70 10-80 20-103 (104)
363 3u1l_A PRE-mRNA-splicing facto 99.2 2E-11 6.9E-16 117.6 7.5 76 102-183 131-228 (240)
364 2dit_A HIV TAT specific factor 99.2 9.1E-11 3.1E-15 99.5 9.1 77 101-181 11-99 (112)
365 3tht_A Alkylated DNA repair pr 99.1 1.2E-10 4.1E-15 117.8 11.1 61 3-69 16-78 (345)
366 3v4m_A Splicing factor U2AF 65 99.1 3.2E-11 1.1E-15 101.6 5.6 76 104-179 4-92 (105)
367 2d9o_A DNAJ (HSP40) homolog, s 99.1 5.7E-10 1.9E-14 93.2 11.6 63 115-183 27-89 (100)
368 3ue2_A Poly(U)-binding-splicin 99.1 1.2E-10 4E-15 100.3 6.6 76 104-179 19-104 (118)
369 1jmt_A Splicing factor U2AF 35 99.1 3.3E-11 1.1E-15 101.3 2.2 69 110-179 20-101 (104)
370 3s6e_A RNA-binding protein 39; 99.0 6.5E-10 2.2E-14 95.1 9.1 80 4-87 6-97 (114)
371 3tht_A Alkylated DNA repair pr 99.0 2.3E-10 8E-15 115.7 7.2 64 102-171 15-80 (345)
372 1owx_A Lupus LA protein, SS-B, 99.0 9.6E-10 3.3E-14 94.8 8.4 74 4-83 17-96 (121)
373 3s6e_A RNA-binding protein 39; 98.8 3.3E-09 1.1E-13 90.6 6.5 74 103-180 5-89 (114)
374 1owx_A Lupus LA protein, SS-B, 98.8 7.9E-09 2.7E-13 89.1 7.7 64 99-168 12-77 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.7 4.9E-08 1.7E-12 79.5 7.3 72 3-83 5-86 (91)
376 2dhx_A Poly (ADP-ribose) polym 98.5 4.8E-07 1.6E-11 75.0 10.2 87 4-118 7-99 (104)
377 3dxb_A Thioredoxin N-terminall 98.5 1.9E-07 6.4E-12 88.1 8.4 67 17-83 141-213 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.5 1.6E-07 5.5E-12 76.9 5.4 71 3-82 13-94 (95)
379 3dxb_A Thioredoxin N-terminall 98.3 6.6E-07 2.3E-11 84.3 7.0 64 117-180 141-209 (222)
380 2dnr_A Synaptojanin-1; RRM dom 98.3 6.4E-07 2.2E-11 72.9 4.9 56 120-183 30-85 (91)
381 1ufw_A Synaptojanin 2; RNP dom 98.2 8.7E-07 3E-11 72.5 3.3 69 104-180 14-91 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.1 8.2E-06 2.8E-10 68.3 8.0 73 3-81 19-98 (117)
383 2l9w_A U4/U6 snRNA-associated- 97.8 4.2E-05 1.4E-09 64.0 7.0 69 104-178 20-94 (117)
384 2dhx_A Poly (ADP-ribose) polym 97.4 0.00054 1.8E-08 56.8 7.8 67 104-178 7-78 (104)
385 1wey_A Calcipressin 1; structu 97.2 0.0014 4.6E-08 54.5 8.6 73 5-83 5-84 (104)
386 1whv_A Poly(A)-specific ribonu 97.1 0.001 3.4E-08 54.6 7.0 59 101-168 12-70 (100)
387 1whv_A Poly(A)-specific ribonu 97.1 0.00091 3.1E-08 54.8 6.5 54 5-67 16-69 (100)
388 1uw4_A UPF3X; nonsense mediate 97.0 0.0016 5.5E-08 53.0 7.0 66 106-171 2-69 (91)
389 3ctr_A Poly(A)-specific ribonu 96.7 0.0014 4.9E-08 53.8 4.7 53 6-67 7-59 (101)
390 1uw4_A UPF3X; nonsense mediate 96.7 0.0048 1.6E-07 50.1 7.5 64 6-69 2-67 (91)
391 1wwh_A Nucleoporin 35, nucleop 96.6 0.0053 1.8E-07 52.2 7.8 71 4-81 23-95 (119)
392 1wey_A Calcipressin 1; structu 96.2 0.0059 2E-07 50.7 5.1 72 105-182 5-82 (104)
393 3ctr_A Poly(A)-specific ribonu 96.1 0.0058 2E-07 50.2 4.8 56 105-169 6-61 (101)
394 2l08_A Regulator of nonsense t 95.8 0.005 1.7E-07 50.5 3.2 68 104-171 8-77 (97)
395 1wwh_A Nucleoporin 35, nucleop 95.6 0.022 7.6E-07 48.4 6.6 65 103-174 22-86 (119)
396 3pq1_A Poly(A) RNA polymerase; 95.3 0.0077 2.6E-07 62.9 3.0 57 4-66 52-108 (464)
397 3pq1_A Poly(A) RNA polymerase; 95.2 0.0099 3.4E-07 62.0 3.8 56 105-166 53-108 (464)
398 2l08_A Regulator of nonsense t 94.9 0.022 7.4E-07 46.7 4.1 65 5-69 9-75 (97)
399 3p3d_A Nucleoporin 53; structu 94.8 0.019 6.5E-07 49.6 3.7 83 1-84 3-100 (132)
400 3p3d_A Nucleoporin 53; structu 88.8 0.24 8.1E-06 42.7 2.9 69 105-174 7-89 (132)
401 3d45_A Poly(A)-specific ribonu 88.2 1 3.4E-05 47.5 8.0 59 103-170 438-496 (507)
402 4eyt_A Telomerase associated p 87.8 4.3 0.00015 32.5 9.4 68 3-78 10-77 (129)
403 3d45_A Poly(A)-specific ribonu 87.7 1.1 3.8E-05 47.2 7.9 55 5-68 440-494 (507)
404 4hhu_A OR280; engineered prote 67.7 43 0.0015 28.0 9.6 89 52-168 6-105 (170)
405 4eyt_A Telomerase associated p 47.5 63 0.0022 25.7 7.0 56 104-167 11-66 (129)
406 3fry_A Probable copper-exporti 46.4 78 0.0027 22.6 7.4 59 105-170 6-64 (73)
407 2ew9_A Copper-transporting ATP 44.5 1.2E+02 0.0043 24.4 9.8 134 1-168 1-142 (149)
408 3j21_T 50S ribosomal protein L 39.3 50 0.0017 26.0 5.3 62 1-67 20-83 (86)
409 3lpe_A Putative transcription 37.8 68 0.0023 25.2 6.0 34 132-170 40-73 (92)
410 3zzp_A TS9, ribosomal protein 34.3 83 0.0028 24.1 5.7 61 49-131 7-70 (77)
411 4e8u_A Putative uncharacterize 34.2 54 0.0018 29.2 5.3 48 7-57 14-72 (172)
412 4e8u_A Putative uncharacterize 32.9 1.2E+02 0.004 27.1 7.2 56 107-165 14-81 (172)
413 3lfj_A Manxb, phosphotransfera 32.2 44 0.0015 30.2 4.4 31 47-79 97-127 (187)
414 2qyc_A Ferredoxin-like protein 29.3 1.2E+02 0.0042 23.7 6.4 53 109-162 9-71 (103)
415 3bb5_A Stress responsive alpha 29.1 1.9E+02 0.0064 23.7 7.6 57 106-162 22-89 (121)
416 2g0c_A ATP-dependent RNA helic 29.0 1.1E+02 0.0038 22.5 5.7 66 7-81 2-75 (76)
417 2lfv_A Protein DAMX; cell divi 34.7 12 0.00041 30.7 0.0 57 114-172 31-89 (106)
418 1q4r_A Protein AT3G17210; cent 28.2 1.6E+02 0.0055 23.5 7.0 56 107-162 13-79 (112)
419 2cu1_A Mitogen-activated prote 27.5 40 0.0014 27.4 2.9 60 112-179 23-83 (103)
420 1tr0_A Stable protein 1; plant 26.3 1.8E+02 0.0061 23.0 6.9 56 107-162 11-79 (108)
421 3ilw_A DNA gyrase subunit A; D 24.7 92 0.0032 32.2 5.8 63 4-67 235-301 (470)
422 3bgu_A Ferredoxin-like protein 24.1 1.5E+02 0.0051 24.1 6.0 56 106-162 23-88 (116)
423 3ezj_A General secretion pathw 23.6 78 0.0027 29.2 4.7 114 13-129 9-133 (241)
424 3lpe_A Putative transcription 23.3 1.3E+02 0.0043 23.6 5.2 44 18-66 21-69 (92)
425 2inr_A DNA topoisomerase 4 sub 23.2 1.3E+02 0.0043 31.5 6.5 62 5-68 275-340 (514)
426 4bby_A Alkyldihydroxyacetoneph 22.7 69 0.0023 34.5 4.6 56 111-167 349-408 (658)
427 3dxs_X Copper-transporting ATP 22.4 1.9E+02 0.0065 20.2 5.8 58 106-169 4-65 (74)
428 1yjr_A Copper-transporting ATP 22.2 1.9E+02 0.0066 19.7 8.0 50 1-56 1-50 (75)
429 2cfx_A HTH-type transcriptiona 21.9 3E+02 0.01 22.6 7.8 48 19-70 78-125 (144)
430 2hiy_A Hypothetical protein; C 21.7 2.6E+02 0.0089 24.8 7.6 128 6-155 7-144 (183)
431 1fme_A FSD-EY peptide; beta-BE 21.0 43 0.0015 20.0 1.4 12 18-29 14-25 (28)
432 2i9x_A Putative septation prot 20.5 99 0.0034 24.3 3.9 26 131-156 5-30 (87)
433 3ksm_A ABC-type sugar transpor 20.4 1.1E+02 0.0037 27.5 5.0 67 8-78 63-133 (276)
434 1l6j_A Matrix metalloproteinas 20.3 89 0.003 31.9 4.6 21 107-127 103-123 (425)
435 2ko1_A CTR148A, GTP pyrophosph 20.3 2.6E+02 0.0088 20.4 7.4 65 7-73 7-72 (88)
436 3bde_A MLL5499 protein; stress 20.2 2.4E+02 0.0081 23.1 6.5 56 107-162 23-86 (120)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=5.4e-33 Score=257.51 Aligned_cols=170 Identities=35% Similarity=0.660 Sum_probs=148.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-ccCCCceEEEeecC
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK-HNIDGRMVEAKKAV 81 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~-~~i~Gr~I~V~~a~ 81 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.. +.+.++.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 45789999999999999999999999999999999999999999999999999999999999863 33899999999988
Q ss_pred CcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 012289 82 PRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (466)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (466)
++..... .......++|||+|||+++|+++|+++|++||.|+.|+|++|+.+++++|||||+|+++++|+
T Consensus 91 ~~~~~~~----------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 91 SREDSQR----------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp C---------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Ccccccc----------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 6654321 112235689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCcccCCCC
Q 012289 162 KVKRAVPKELSPGPTRSPLGG 182 (466)
Q Consensus 162 ~Ai~~l~~~~~~~~~r~~~g~ 182 (466)
+||+++...+.++.+++.+..
T Consensus 161 ~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 161 KIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp HHHHCSCCEETTEECEEEECC
T ss_pred HHHHhCCcEECCEEEEEEecC
Confidence 999998778889888876643
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.3e-33 Score=255.14 Aligned_cols=163 Identities=44% Similarity=0.854 Sum_probs=149.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccCCCceEEEeecCC
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNIDGRMVEAKKAVP 82 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~ 82 (466)
+++++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|++.++.++++.|.|.++.+
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIP 80 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccc
Confidence 46799999999999999999999999999999999999999999999999999999999999988889999999999887
Q ss_pred cchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHH
Q 012289 83 RDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (466)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~ 162 (466)
+.... ..++|||+|||+++++++|+++|++||+|+.|+|+.|+.+++++|||||+|+++++|++
T Consensus 81 ~~~~~----------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 81 RDEQD----------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp HHHHH----------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred hhhcc----------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 65432 35689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCCCCcccCCC
Q 012289 163 VKRAVPKELSPGPTRSPLG 181 (466)
Q Consensus 163 Ai~~l~~~~~~~~~r~~~g 181 (466)
|+++....+.++++++.+.
T Consensus 145 A~~~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 145 VCQNKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHHCSEECSSSSCEEEEEC
T ss_pred HHhCCCEEeCCeEEEEeec
Confidence 9995445688888877654
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.8e-32 Score=258.59 Aligned_cols=163 Identities=23% Similarity=0.364 Sum_probs=145.4
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
..++|||+|||++++|++|+++|++||+|++|+|++|+.+++++|||||+|.++++|++||+.++. +.++.|.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999998765 889999999887
Q ss_pred CcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 012289 82 PRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (466)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (466)
........ ..++|||+|||+.+|+++|+++|++||.|++|+|++|+ ..+|+||||+|+++++|+
T Consensus 94 ~~~~~~~~--------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~ 157 (213)
T 4f02_A 94 RDPSLRKS--------------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 157 (213)
T ss_dssp CCTHHHHH--------------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHH
T ss_pred cccccccc--------------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHH
Confidence 66544321 34689999999999999999999999999999999986 457999999999999999
Q ss_pred HHHHHCCCC-CCCCCcccCCCC
Q 012289 162 KVKRAVPKE-LSPGPTRSPLGG 182 (466)
Q Consensus 162 ~Ai~~l~~~-~~~~~~r~~~g~ 182 (466)
+||++|++. +.+++|+|.+..
T Consensus 158 ~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 158 RAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHhCCCEECCEEEEEEEcC
Confidence 999988765 778888886653
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.1e-32 Score=245.19 Aligned_cols=160 Identities=23% Similarity=0.435 Sum_probs=145.1
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
..++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|++.++. +.++.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 578999999999999999999999999999999999998999999999999999999999997766 889999999988
Q ss_pred CcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 012289 82 PRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (466)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (466)
++... ...++|||.|||+.+++++|+++|++||.|+.|.|++++.+++++++|||+|+++++|+
T Consensus 82 ~~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 82 PGGES----------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp CCSST----------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCccc----------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 65421 34679999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHCCCCC-CC--CCcccC
Q 012289 162 KVKRAVPKEL-SP--GPTRSP 179 (466)
Q Consensus 162 ~Ai~~l~~~~-~~--~~~r~~ 179 (466)
+|++.|++.. .+ +++++.
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEE
T ss_pred HHHHHhcCCEecCCCeEEEEE
Confidence 9999888874 34 555543
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.1e-31 Score=241.56 Aligned_cols=155 Identities=25% Similarity=0.501 Sum_probs=142.3
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecCC
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAVP 82 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~~ 82 (466)
+++|||+|||++++|++|+++|++||+|.+|+|++++.++++++||||+|.++++|++|++.++. +.++.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999998999999999999999999999998766 8899999999886
Q ss_pred cchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHH
Q 012289 83 RDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (466)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~ 162 (466)
.... ...++|||+|||+.+++++|+++|++||.|++|+|+.|+.+++++++|||+|+++++|++
T Consensus 82 ~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 82 SSAS----------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp CCGG----------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred Cccc----------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 5432 245689999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHCCCCC-CCCC
Q 012289 163 VKRAVPKEL-SPGP 175 (466)
Q Consensus 163 Ai~~l~~~~-~~~~ 175 (466)
|++.|++.. .++.
T Consensus 146 A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 146 AIKGLNGQKPSGAT 159 (167)
T ss_dssp HHHHHTTCCCTTCS
T ss_pred HHHHhcCCccCCCc
Confidence 999888764 4443
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=5.7e-32 Score=254.33 Aligned_cols=175 Identities=18% Similarity=0.391 Sum_probs=147.6
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++. |.++.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 458999999999999999999999999999999999998999999999999999999999998766 889999998887
Q ss_pred CcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 012289 82 PRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (466)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (466)
.+.......... .......++|||+|||+++++++|+++|++||.|++|+|++|+.++++++||||+|+++++|+
T Consensus 107 ~~~~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 107 NIGQAQPIIDQL-----AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp CCGGGHHHHHHH-----HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Cccccchhhhhh-----hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 655332111000 001134679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCC-CCCCCcccCCCCC
Q 012289 162 KVKRAVPKE-LSPGPTRSPLGGY 183 (466)
Q Consensus 162 ~Ai~~l~~~-~~~~~~r~~~g~~ 183 (466)
+|+++|++. +.++++++.+...
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSS
T ss_pred HHHHHccCCEeCCcEEEEEEecC
Confidence 999987765 7778887766543
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1e-31 Score=241.39 Aligned_cols=161 Identities=25% Similarity=0.475 Sum_probs=144.1
Q ss_pred CEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecCCc
Q 012289 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAVPR 83 (466)
Q Consensus 6 ~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~~~ 83 (466)
++|||+|||++++|++|+++|++||+|.+|+|++++. +++++||||+|.++++|++|++.++. +.++.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999975 77999999999999999999988766 89999999998765
Q ss_pred chhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHH
Q 012289 84 DDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163 (466)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~A 163 (466)
.. ......++|||+|||+.+++++|+++|++||.|+.|+|++|+.+++++++|||+|+++++|++|
T Consensus 80 ~~--------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 145 (166)
T 3md3_A 80 QQ--------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 145 (166)
T ss_dssp CC--------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred CC--------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 42 1234577999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCC-CCCCCcccCCC
Q 012289 164 KRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 164 i~~l~~~-~~~~~~r~~~g 181 (466)
++.|++. +.++++++.+.
T Consensus 146 ~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 146 MDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp HHHHTTCEETTEECEEEES
T ss_pred HHHhCCCccCCcEEEEEec
Confidence 9987765 66777776553
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=1.7e-31 Score=242.31 Aligned_cols=162 Identities=25% Similarity=0.454 Sum_probs=141.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhcc--CC---CceE
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTG--RARGFGFVVFADPAVAEIVIQEKHN--ID---GRMV 75 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg--~srGfaFVeF~~~e~A~~Al~~~~~--i~---Gr~I 75 (466)
++.++|||+|||++++|++|+++|++||+|++|+|++++.++ ++++||||+|.++++|++|++.++. +. .+.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 478999999999999999999999999999999999999877 8999999999999999999998876 32 5667
Q ss_pred EEeecCCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEec
Q 012289 76 EAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155 (466)
Q Consensus 76 ~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~ 155 (466)
.+.++.++.. .....++|||+|||+.+|+++|+++|++||.|++|+|++++. +++++||||+|+
T Consensus 81 ~~~~~~~~~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~ 144 (175)
T 3nmr_A 81 QMKPADSEKN---------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFT 144 (175)
T ss_dssp EEEECGGGCC---------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEES
T ss_pred EEcccccccc---------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEEC
Confidence 7766654432 123567999999999999999999999999999999999975 899999999999
Q ss_pred CHHHHHHHHHHCCCC-CCC---CCcccCC
Q 012289 156 SEEAVDKVKRAVPKE-LSP---GPTRSPL 180 (466)
Q Consensus 156 s~e~A~~Ai~~l~~~-~~~---~~~r~~~ 180 (466)
++++|++|+++|++. +.. +++++.+
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 999999999999875 443 6666643
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.6e-29 Score=229.27 Aligned_cols=155 Identities=18% Similarity=0.386 Sum_probs=135.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcC----C-------CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTY----G-------EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN-- 69 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~----G-------~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~-- 69 (466)
++.++|||+|||++++|++|+++|++| | +|.++++.+ +++||||+|.++++|++|+ +++.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 467999999999999999999999999 6 677776644 4789999999999999999 6655
Q ss_pred CCCceEEEeecCCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceE
Q 012289 70 IDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGF 149 (466)
Q Consensus 70 i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~ 149 (466)
+.++.|.|.++.+... ....++|||+|||+.+++++|+++|++||+|+.|+|++|+.++++++|
T Consensus 75 ~~g~~i~v~~~~~~~~----------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP----------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp ETTEECEEECCSSCCC----------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred ecCceeeecCCcccCC----------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 8999999988765432 124679999999999999999999999999999999999989999999
Q ss_pred EEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 150 GFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 150 aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
|||+|+++++|++|+++|++. +.++++++.+
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 999999999999999987765 6666666543
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=3.8e-29 Score=231.90 Aligned_cols=173 Identities=17% Similarity=0.365 Sum_probs=139.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcC----C-------CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTY----G-------EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN-- 69 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~----G-------~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~-- 69 (466)
...++|||+|||++++|++|+++|++| + .|.++.+ +++++||||+|.++++|++|| +++.
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357999999999999999999999999 4 5555555 456899999999999999999 6765
Q ss_pred CCCceEEEeecCCcchhhhhccCCC----CCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC
Q 012289 70 IDGRMVEAKKAVPRDDQIVLNRSSG----SIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR 145 (466)
Q Consensus 70 i~Gr~I~V~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~ 145 (466)
|.++.|.|.++.+............ .......+...++|||+|||+.+++++|+++|++||.|+.|+|++|+.+++
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 8999999999876543321111110 111122335678999999999999999999999999999999999999999
Q ss_pred cceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCCC
Q 012289 146 PRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLGG 182 (466)
Q Consensus 146 ~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g~ 182 (466)
+++||||+|+++++|++|++.|++. +.++.+++.+..
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 9999999999999999999987765 677777776543
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=6.6e-29 Score=235.01 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=131.7
Q ss_pred CCCEEEEcCCC-ccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 4 DNGKLFIGGIS-WDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 4 d~~~LfVgnLP-~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
+.++|||+||| +++++++|+++|++||+|++|+|+++ .||||||+|.++++|++||+.++. +.++.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 379999999999999999998876 89999999988
Q ss_pred CCcchhhhh----ccC--------C--CCCC-------CCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCe--eEEEE
Q 012289 81 VPRDDQIVL----NRS--------S--GSIH-------GSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTI--TDVVV 137 (466)
Q Consensus 81 ~~~~~~~~~----~~~--------~--~~~~-------~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I--~~v~i 137 (466)
..+...... ... . .... ......+.++|||+|||+++||++|+++|++||.| +.|+|
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 643211000 000 0 0000 00112356789999999999999999999999999 89999
Q ss_pred EecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCC
Q 012289 138 MYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELS 172 (466)
Q Consensus 138 ~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~ 172 (466)
+.++ +..+++|||+|+++++|++||+.|++...
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 8775 45679999999999999999999998743
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1.8e-28 Score=240.82 Aligned_cols=171 Identities=16% Similarity=0.309 Sum_probs=139.3
Q ss_pred CCCCEEEEcCCCccCcHHHHH----HHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEE
Q 012289 3 SDNGKLFIGGISWDTNEERLK----EYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVE 76 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~----~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~ 76 (466)
..+++|||+|||++++|++|+ ++|++||+|++|+|++ ++++||||||+|.++++|++||+.++. |.++.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 568999999999999999977 8999999999999887 578999999999999999999998876 8899999
Q ss_pred EeecCCcchhhhhccCCC-----------------------C--------------------------------------
Q 012289 77 AKKAVPRDDQIVLNRSSG-----------------------S-------------------------------------- 95 (466)
Q Consensus 77 V~~a~~~~~~~~~~~~~~-----------------------~-------------------------------------- 95 (466)
|+++..+.+......... .
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 999876543110000000 0
Q ss_pred ----------------------------------CCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Q 012289 96 ----------------------------------IHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH 141 (466)
Q Consensus 96 ----------------------------------~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~ 141 (466)
..........++|||+|||+.+++++|+++|++||.|++|+|+.++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 0000122356789999999999999999999999999999999654
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHCCCC-CC-CCCcccCCC
Q 012289 142 NTQRPRGFGFITYDSEEAVDKVKRAVPKE-LS-PGPTRSPLG 181 (466)
Q Consensus 142 ~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~-~~~~r~~~g 181 (466)
++||||+|+++++|++|+++|++. +. +++|++.+.
T Consensus 244 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 244 -----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred -----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 589999999999999999999886 55 677777654
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=3.8e-28 Score=238.79 Aligned_cols=166 Identities=13% Similarity=0.239 Sum_probs=148.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
...++|||+|||+++++++|+++|++||+|..|+|++++.+++++|||||+|.++++|++|++.++. +.++.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4578999999999999999999999999999999999999999999999999999999999998776 89999999998
Q ss_pred CCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCC-CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHH
Q 012289 81 VPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTV-TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~v-teedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~ 159 (466)
.++... +.....++|||+|||+.+ ++++|+++|++||.|+.|+|++|+ +++++++|||+|+++++
T Consensus 173 ~~~~~~-------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~ 238 (284)
T 3smz_A 173 DAGQLT-------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEM 238 (284)
T ss_dssp CGGGCC-------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHH
T ss_pred CCCCCC-------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHH
Confidence 865432 122457899999999995 999999999999999999999987 58999999999999999
Q ss_pred HHHHHHHCCCC-CCCCCcccCCCC
Q 012289 160 VDKVKRAVPKE-LSPGPTRSPLGG 182 (466)
Q Consensus 160 A~~Ai~~l~~~-~~~~~~r~~~g~ 182 (466)
|++|+++|++. +.++++++.+..
T Consensus 239 A~~A~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 239 AEEAQQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHhCCCccCCeEEEEEEec
Confidence 99999988775 677777776654
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=2e-29 Score=229.88 Aligned_cols=158 Identities=21% Similarity=0.298 Sum_probs=135.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++|++|.. .+++++.++++||||||+|.++++|++||+ ++. +.++.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 56899999999999999999999999998876 445555678999999999999999999995 655 89999999999
Q ss_pred CCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHH
Q 012289 81 VPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (466)
.++... .....++|||+|||+++++++|+++|++||.|..+ ..++++++||||+|+++++|
T Consensus 89 ~~~~~~--------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 89 KGRDSK--------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp CCSSCS--------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHH
T ss_pred CCcccc--------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHH
Confidence 875432 22367899999999999999999999999988665 56689999999999999999
Q ss_pred HHHHHHCCCC-CCCCCcccCCC
Q 012289 161 DKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 161 ~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
++|+++|++. +.++++++.+.
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEEC
T ss_pred HHHHHHhCCCEECCeEEEEEec
Confidence 9999987765 67777777554
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=1.8e-27 Score=227.87 Aligned_cols=170 Identities=15% Similarity=0.215 Sum_probs=137.0
Q ss_pred CCCCEEEEcCCCc-cCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEee
Q 012289 3 SDNGKLFIGGISW-DTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKK 79 (466)
Q Consensus 3 ~d~~~LfVgnLP~-~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~ 79 (466)
.+.++|||+|||+ +++|++|+++|++||+|++|+|++++ ++||||+|.++++|++|++.++. +.++.|.|++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4679999999999 99999999999999999999999875 78999999999999999997765 8999999999
Q ss_pred cCCcchhhhhccCC------------CCCC-------CCCCCCCcceeeecCCCCCCCHHHHHHHHhhcC-CeeEEEEEe
Q 012289 80 AVPRDDQIVLNRSS------------GSIH-------GSPGPGRTRKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMY 139 (466)
Q Consensus 80 a~~~~~~~~~~~~~------------~~~~-------~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG-~I~~v~i~~ 139 (466)
+.++.......... .... ......+.++|||+|||+.+++++|+++|++|| +|+.|+|+.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 87553221110000 0000 001123468999999999999999999999999 999999975
Q ss_pred cCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CC-CCCcccCCCC
Q 012289 140 DHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LS-PGPTRSPLGG 182 (466)
Q Consensus 140 d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~-~~~~r~~~g~ 182 (466)
+ .+++|||+|+++++|++|++.|++. +. ++++++.+..
T Consensus 187 ~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 187 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp S-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred C-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3 3789999999999999999988776 55 6777776543
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=9.5e-28 Score=223.48 Aligned_cols=168 Identities=17% Similarity=0.249 Sum_probs=135.9
Q ss_pred CCCEEEEcCCCc-cCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 4 DNGKLFIGGISW-DTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 4 d~~~LfVgnLP~-~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
+.++|||+|||+ ++++++|+++|++||+|++|+|++++ ++||||+|.++++|++|++.++. +.++.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 478999999999 99999999999999999999998875 68999999999999999998766 89999999988
Q ss_pred CCcchhhhhccCC-------------------CCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcC-CeeEEEEEec
Q 012289 81 VPRDDQIVLNRSS-------------------GSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYD 140 (466)
Q Consensus 81 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG-~I~~v~i~~d 140 (466)
.++.......... .........++.++|||+|||+.+++++|+++|++|| .|+.|+|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 7553221110000 0000011123578999999999999999999999999 9999999764
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHCCCC-CC-CCCcccCCC
Q 012289 141 HNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LS-PGPTRSPLG 181 (466)
Q Consensus 141 ~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~-~~~~r~~~g 181 (466)
. +++|||+|+++++|++|+++|++. +. ++++++.+.
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 2 789999999999999999988876 45 577776553
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=4.9e-28 Score=238.95 Aligned_cols=168 Identities=12% Similarity=0.260 Sum_probs=137.6
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEee
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYG-EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKK 79 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~ 79 (466)
.+.++|||+|||+++++++|+++|++|| +|..|+|++++. +++++||||+|.++++|++|++.++. +.++.|.|++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3578999999999999999999999999 999999999876 88999999999999999999998876 8999999999
Q ss_pred cCCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCC-CCHHHHHHHHhhcCCeeEEEEEecCC-CCCcceEEEEEecCH
Q 012289 80 AVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYDHN-TQRPRGFGFITYDSE 157 (466)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~-vteedLk~~F~~fG~I~~v~i~~d~~-tg~~rG~aFV~F~s~ 157 (466)
+.++...... .......++|||+|||+. +++++|+++|++||.|+.|+|++|+. |+++++||||+|+++
T Consensus 194 a~~~~~~~~~---------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 194 SNPLEKSKRT---------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp CCCC------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCCCcccccc---------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 9876543321 122346789999999999 99999999999999999999999887 699999999999999
Q ss_pred HHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 158 EAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 158 e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
++|++|+ .|++. +.++++++.+.
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEEEC
T ss_pred HHHHHHH-HhcCCEECCcEEEEEEe
Confidence 9999999 77775 67777777654
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=2.1e-27 Score=231.91 Aligned_cols=150 Identities=27% Similarity=0.475 Sum_probs=134.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++|+++|+++|++||+|.+|+|++ ++|||||+|.++++|++|++.++. |.++.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 3468999999999999999999999999999999965 368999999999999999998765 89999999988
Q ss_pred CCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHH
Q 012289 81 VPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (466)
.+ .++|||+|||+.+|+++|+++|++||.|++|+|+.| .++++++||||+|+++++|
T Consensus 94 ~~----------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 94 TH----------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp CC----------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHH
T ss_pred cc----------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHH
Confidence 63 358999999999999999999999999999999999 5799999999999999999
Q ss_pred HHHHHHC-CCCCC----CCCcccCCC
Q 012289 161 DKVKRAV-PKELS----PGPTRSPLG 181 (466)
Q Consensus 161 ~~Ai~~l-~~~~~----~~~~r~~~g 181 (466)
.+|++++ ++.+. ++++++.+.
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred HHHHHHhcCCeEEecCCCceEEEeec
Confidence 9999998 44443 777766443
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=1.6e-26 Score=227.20 Aligned_cols=150 Identities=19% Similarity=0.411 Sum_probs=134.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++|| |++|++ ++++|||||+|.++++|++|++.++. +.++.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3578999999999999999999999999 999888 45678999999999999999998775 88999999874
Q ss_pred CCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHH
Q 012289 81 VPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (466)
. ..++|||+|||+++++++|+++|++||.|+.|+|++|+.++++++||||+|.++++|
T Consensus 93 ~----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 93 P----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp C----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred C----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 3 235899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCC-CCCCCcccCCC
Q 012289 161 DKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 161 ~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
++|++.+++. +.++++++.+.
T Consensus 151 ~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 151 ARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHhCCCEeCCcEEEEEEC
Confidence 9999777665 67777777554
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.9e-26 Score=227.59 Aligned_cols=152 Identities=11% Similarity=0.180 Sum_probs=128.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|.+|+|++++.+ +++||||+|.++++|++||+ ++. +.++.|.|.++
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC
Confidence 56899999999999999999999999999999999998753 58999999999999999995 554 88999999875
Q ss_pred CCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecCHHH
Q 012289 81 VPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG-~I~~v~i~~d~~tg~~rG~aFV~F~s~e~ 159 (466)
..++|||+|||+.+++++|+++|++|| +|+.|.|+.++. +++++||||+|.++++
T Consensus 116 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 116 -----------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKED 171 (292)
T ss_dssp -----------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHH
T ss_pred -----------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHH
Confidence 256899999999999999999999999 999999999887 7899999999999999
Q ss_pred HHHHHHHCCCC-CCCCCcccCCC
Q 012289 160 VDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 160 A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
|++|++.++.. +.++++++.+.
T Consensus 172 a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp HHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHhCCCEeCCcEEEEEEC
Confidence 99999977665 67777766553
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=2e-21 Score=175.02 Aligned_cols=145 Identities=18% Similarity=0.235 Sum_probs=110.1
Q ss_pred EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecCCcchhhhhccCCCCCCCCCCCCCcceeeec
Q 012289 34 EAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVG 111 (466)
Q Consensus 34 ~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~ 111 (466)
.++|+.+.. +++||+||+|.++++|++|++.++. .....+.+........... ..............++|||+
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE---GSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC---CCCCSSCCCCCCBCCEEEEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc---cccccccccCCCCCCEEEEe
Confidence 467777754 6899999999999999999987653 2223333332222211111 11111122233567899999
Q ss_pred CCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCCCC
Q 012289 112 GLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLGGY 183 (466)
Q Consensus 112 nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g~~ 183 (466)
|||+++++++|+++|++||+|+.|+|++|+.+++++|||||+|+++++|++||+.|+.. +.++++++.+...
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999998875 7788888876544
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=1.4e-21 Score=167.69 Aligned_cols=108 Identities=19% Similarity=0.397 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
..++|||+|||++++|++|+++|++||+|++|+|++++ +++||||||+|.++++|++||++++. |+++.|.|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999986 45899999999999999999998866 899999999998
Q ss_pred CcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHH
Q 012289 82 PRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESD 121 (466)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteed 121 (466)
++....... .......++|||+|||+++|++-
T Consensus 82 ~~~~~~~~~--------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAEL--------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC------------------------------------
T ss_pred Ccccccccc--------ccccCCCCceEeCCCCCCccccc
Confidence 765432211 11123456799999999999874
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=151.06 Aligned_cols=80 Identities=24% Similarity=0.470 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
-+.++|||+|||+++||++|+++|++||+|++|+|++|+.++++||||||+|.++++|++|++.++. |.+++|.|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3568999999999999999999999999999999999999999999999999999999999998876 89999999999
Q ss_pred CC
Q 012289 81 VP 82 (466)
Q Consensus 81 ~~ 82 (466)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=2.6e-19 Score=160.11 Aligned_cols=133 Identities=19% Similarity=0.268 Sum_probs=106.7
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-cc--CCCceEEEeecCCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHH
Q 012289 44 GRARGFGFVVFADPAVAEIVIQEK-HN--IDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTES 120 (466)
Q Consensus 44 g~srGfaFVeF~~~e~A~~Al~~~-~~--i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vtee 120 (466)
.+.+|+++|+|.++++|++|++++ +. +++ .+.++++..+......................++|||+|||+++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467899999999999999999977 44 889 99999887654433222222222233344567899999999999999
Q ss_pred HHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCCC
Q 012289 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLGG 182 (466)
Q Consensus 121 dLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g~ 182 (466)
+|+++|++||.|++|+|++| +++||||+|+++++|++|++.|+.. +.++++++.+..
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 99999999999999999876 5899999999999999999977664 778888876643
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=148.03 Aligned_cols=85 Identities=20% Similarity=0.301 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++||++++. ++++.|.|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5678999999999999999999999999999999999999999999999999999999999998876 89999999999
Q ss_pred CCcchhh
Q 012289 81 VPRDDQI 87 (466)
Q Consensus 81 ~~~~~~~ 87 (466)
.......
T Consensus 84 ~~~~~~~ 90 (110)
T 3s8s_A 84 IKGQQRM 90 (110)
T ss_dssp STTHHHH
T ss_pred CCCcHHH
Confidence 7665443
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=147.56 Aligned_cols=81 Identities=21% Similarity=0.418 Sum_probs=75.2
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc---cCCCceEEEeec
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTYG-EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH---NIDGRMVEAKKA 80 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~---~i~Gr~I~V~~a 80 (466)
+++|||+|||+++||++|+++|++|| +|++|+|++|+.|+++||||||+|.++++|++||+.++ .+.+++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999999999999999999999999999998763 389999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.+++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87754
No 27
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=143.33 Aligned_cols=84 Identities=39% Similarity=0.722 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccCCCceEEEeecCC
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNIDGRMVEAKKAVP 82 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~ 82 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||++++.|+++.|.|+++.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 56789999999999999999999999999999999999999999999999999999999999988889999999999988
Q ss_pred cchh
Q 012289 83 RDDQ 86 (466)
Q Consensus 83 ~~~~ 86 (466)
+...
T Consensus 93 ~~~~ 96 (103)
T 2cqg_A 93 KQSQ 96 (103)
T ss_dssp TCCC
T ss_pred CCcC
Confidence 7643
No 28
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=6.9e-18 Score=143.90 Aligned_cols=85 Identities=29% Similarity=0.520 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5689999999999999999999999999999999999998999999999999999999999998865 89999999999
Q ss_pred CCcchhh
Q 012289 81 VPRDDQI 87 (466)
Q Consensus 81 ~~~~~~~ 87 (466)
.++....
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8776543
No 29
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-18 Score=140.48 Aligned_cols=84 Identities=31% Similarity=0.527 Sum_probs=78.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5689999999999999999999999999999999999998999999999999999999999998876 89999999999
Q ss_pred CCcchh
Q 012289 81 VPRDDQ 86 (466)
Q Consensus 81 ~~~~~~ 86 (466)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987653
No 30
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=144.82 Aligned_cols=80 Identities=24% Similarity=0.366 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCC--eEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc------CCCce
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGE--VVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN------IDGRM 74 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~--V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~------i~Gr~ 74 (466)
..-.+|||+|||+++||++|+++|++||+ |.+|+|++|+.|+++||||||+|.++++|++||+.++. |++|+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45689999999999999999999999995 67999999999999999999999999999999998765 78999
Q ss_pred EEEeecCC
Q 012289 75 VEAKKAVP 82 (466)
Q Consensus 75 I~V~~a~~ 82 (466)
|.|++|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 31
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=143.54 Aligned_cols=85 Identities=46% Similarity=0.812 Sum_probs=79.4
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEe
Q 012289 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAK 78 (466)
Q Consensus 1 m~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~ 78 (466)
|..+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++. |++++|.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 457889999999999999999999999999999999999999999999999999999999999998875 899999999
Q ss_pred ecCCcch
Q 012289 79 KAVPRDD 85 (466)
Q Consensus 79 ~a~~~~~ 85 (466)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987654
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=139.05 Aligned_cols=83 Identities=29% Similarity=0.659 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.++. |+++.|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 5689999999999999999999999999999999999999999999999999999999999998765 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87754
No 33
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=5.2e-18 Score=137.04 Aligned_cols=81 Identities=27% Similarity=0.517 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.++. ++++.|.|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4678999999999999999999999999999999999998999999999999999999999998765 89999999999
Q ss_pred CCc
Q 012289 81 VPR 83 (466)
Q Consensus 81 ~~~ 83 (466)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 865
No 34
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-18 Score=143.44 Aligned_cols=85 Identities=26% Similarity=0.463 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEe
Q 012289 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAK 78 (466)
Q Consensus 1 m~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~ 78 (466)
|..+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++. |+++.|.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 457789999999999999999999999999999999999999999999999999999999999998776 899999999
Q ss_pred ecCCcch
Q 012289 79 KAVPRDD 85 (466)
Q Consensus 79 ~a~~~~~ 85 (466)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987654
No 35
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.9e-18 Score=139.70 Aligned_cols=82 Identities=41% Similarity=0.779 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++|+||||+|.++++|++||+ ++. |+++.|.|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 567999999999999999999999999999999999999999999999999999999999998 654 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87754
No 36
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=5.4e-18 Score=136.32 Aligned_cols=81 Identities=26% Similarity=0.478 Sum_probs=76.1
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEe
Q 012289 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAK 78 (466)
Q Consensus 1 m~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~ 78 (466)
|..+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.++. ++++.|.|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 467889999999999999999999999999999999999988999999999999999999999998776 899999999
Q ss_pred ecC
Q 012289 79 KAV 81 (466)
Q Consensus 79 ~a~ 81 (466)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 37
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=5e-18 Score=141.39 Aligned_cols=99 Identities=24% Similarity=0.380 Sum_probs=81.7
Q ss_pred CEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecCCc
Q 012289 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAVPR 83 (466)
Q Consensus 6 ~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~~~ 83 (466)
++|||+|||+++++++|+++|++||+|++|+|+++ +++||||+|.++++|++|++.++. ++++.|.|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999886 789999999999999999997754 89999999999887
Q ss_pred chhhhhccCCCCCCCCCCCCCcceeeecCCCC
Q 012289 84 DDQIVLNRSSGSIHGSPGPGRTRKIFVGGLAS 115 (466)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~ 115 (466)
......... ........+|||++|+.
T Consensus 76 ~~~~~~~~~------~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRP------PARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSC------CCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCC------CccccCCCceecCCCCC
Confidence 633211111 11123467899999974
No 38
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1e-17 Score=134.05 Aligned_cols=80 Identities=25% Similarity=0.497 Sum_probs=75.5
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecCC
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAVP 82 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~~ 82 (466)
.++|||+|||+++++++|+++|++||+|.+|+|++++.++++++||||+|.++++|++|++.++. +.++.|.|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999998765 8999999999987
Q ss_pred cc
Q 012289 83 RD 84 (466)
Q Consensus 83 ~~ 84 (466)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 39
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=5.4e-18 Score=144.65 Aligned_cols=83 Identities=25% Similarity=0.488 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++|+||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999999998999999999999999999999998876 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87754
No 40
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.3e-18 Score=141.90 Aligned_cols=84 Identities=25% Similarity=0.499 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc------c--CCCce
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH------N--IDGRM 74 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~------~--i~Gr~ 74 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++ . |+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457899999999999999999999999999999999999999999999999999999999999876 4 99999
Q ss_pred EEEeecCCcchh
Q 012289 75 VEAKKAVPRDDQ 86 (466)
Q Consensus 75 I~V~~a~~~~~~ 86 (466)
|.|+++.++...
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999877543
No 41
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.2e-18 Score=141.35 Aligned_cols=83 Identities=28% Similarity=0.482 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5679999999999999999999999999999999999999999999999999999999999998876 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=138.50 Aligned_cols=81 Identities=20% Similarity=0.442 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|++.++. |+++.|.|+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999998 899999999999999999999998775 99999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 43
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=6.4e-18 Score=144.08 Aligned_cols=102 Identities=17% Similarity=0.297 Sum_probs=90.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
...++|||+|||+++++++|+++|++||+|++|.|+++ +.+++||||+|.++++|++|++.++. +.++.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45789999999999999999999999999999999976 44699999999999999999998876 89999999999
Q ss_pred CCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCC
Q 012289 81 VPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGT 131 (466)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~ 131 (466)
.++... .+++...++++|+++|++||.
T Consensus 83 ~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 865532 367788899999999999985
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.2e-18 Score=140.97 Aligned_cols=83 Identities=29% Similarity=0.496 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5679999999999999999999999999999999999998999999999999999999999998875 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 87654
No 45
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=142.70 Aligned_cols=83 Identities=37% Similarity=0.731 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc-CCCceEEEeecC
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN-IDGRMVEAKKAV 81 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~-i~Gr~I~V~~a~ 81 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++. |+++.|.|+++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAY 94 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEEST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcc
Confidence 5679999999999999999999999999999999999999999999999999999999999997765 899999999997
Q ss_pred Ccch
Q 012289 82 PRDD 85 (466)
Q Consensus 82 ~~~~ 85 (466)
++..
T Consensus 95 ~~~~ 98 (116)
T 2cqd_A 95 LGAK 98 (116)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 6543
No 46
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.1e-18 Score=139.29 Aligned_cols=84 Identities=26% Similarity=0.536 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEe
Q 012289 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEA-VIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAK 78 (466)
Q Consensus 2 ~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v-~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~ 78 (466)
+++.++|||+|||+++++++|+++|++||+|++| +|++++.++++++||||+|.++++|++|++.++. |.++.|.|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3578999999999999999999999999999999 9999988999999999999999999999998776 899999999
Q ss_pred ecCCcch
Q 012289 79 KAVPRDD 85 (466)
Q Consensus 79 ~a~~~~~ 85 (466)
++.++..
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9987654
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7.9e-18 Score=140.70 Aligned_cols=83 Identities=25% Similarity=0.384 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 4679999999999999999999999999999999999999999999999999999999999998865 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87653
No 48
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=4.9e-18 Score=138.84 Aligned_cols=81 Identities=21% Similarity=0.439 Sum_probs=69.8
Q ss_pred CEEEEcCCCccCcHHHHHHHhhcCC--CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 6 GKLFIGGISWDTNEERLKEYFSTYG--EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 6 ~~LfVgnLP~~~teeeL~~~F~~~G--~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
.+|||+|||++++|++|+++|++|| +|++|+|++++.++++||||||+|.++++|++|++.++. ++++.|.|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 999999999999999999999999999999999998875 999999999998
Q ss_pred Ccchh
Q 012289 82 PRDDQ 86 (466)
Q Consensus 82 ~~~~~ 86 (466)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 49
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=1.6e-17 Score=134.40 Aligned_cols=79 Identities=53% Similarity=1.062 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-ccCCCceEEEeec
Q 012289 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK-HNIDGRMVEAKKA 80 (466)
Q Consensus 2 ~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~-~~i~Gr~I~V~~a 80 (466)
+.+.++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|++.+ +.++++.|.|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 357899999999999999999999999999999999999999999999999999999999999753 3399999999875
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=138.68 Aligned_cols=83 Identities=30% Similarity=0.514 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEE
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRN---TGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEA 77 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~---tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V 77 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|++++. |+++++||||+|.++++|++||+.++. |+++.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5689999999999999999999999999999999999876 679999999999999999999998765 89999999
Q ss_pred eecCCcch
Q 012289 78 KKAVPRDD 85 (466)
Q Consensus 78 ~~a~~~~~ 85 (466)
+++.++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987654
No 51
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=9.2e-18 Score=142.48 Aligned_cols=84 Identities=45% Similarity=0.859 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-ccCCCceEEEeec
Q 012289 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK-HNIDGRMVEAKKA 80 (466)
Q Consensus 2 ~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~-~~i~Gr~I~V~~a 80 (466)
+.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++||||||+|.++++|++||+.+ +.++++.|.|+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999999976 4499999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87754
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=4.5e-18 Score=137.98 Aligned_cols=81 Identities=20% Similarity=0.483 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEee
Q 012289 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKK 79 (466)
Q Consensus 2 ~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~ 79 (466)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ .++. ++++.|.|++
T Consensus 3 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 3 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIP 81 (89)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEE
Confidence 456799999999999999999999999999999999999989999999999999999999999 7765 8999999999
Q ss_pred cCCc
Q 012289 80 AVPR 83 (466)
Q Consensus 80 a~~~ 83 (466)
+.+.
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 8764
No 53
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=8.3e-18 Score=141.06 Aligned_cols=83 Identities=49% Similarity=0.957 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++|+||||+|.++++|++||+. +. |+++.|.|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 5689999999999999999999999999999999999999999999999999999999999997 54 89999999999
Q ss_pred CCcchh
Q 012289 81 VPRDDQ 86 (466)
Q Consensus 81 ~~~~~~ 86 (466)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 877643
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=136.34 Aligned_cols=79 Identities=28% Similarity=0.587 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.++. |.++.|.|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 5678999999999999999999999999999999999999999999999999999999999998876 89999999987
Q ss_pred C
Q 012289 81 V 81 (466)
Q Consensus 81 ~ 81 (466)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=139.49 Aligned_cols=82 Identities=22% Similarity=0.412 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.++. |.++.|.|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4568899999999999999999999999999999999999999999999999999999999998765 89999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8764
No 56
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=136.29 Aligned_cols=80 Identities=31% Similarity=0.494 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.++. |++++|.|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 4578999999999999999999999999999999999999999999999999999999999998876 89999999998
Q ss_pred CC
Q 012289 81 VP 82 (466)
Q Consensus 81 ~~ 82 (466)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=4.2e-18 Score=142.27 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCc------cCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCC-ce
Q 012289 4 DNGKLFIGGISW------DTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDG-RM 74 (466)
Q Consensus 4 d~~~LfVgnLP~------~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~G-r~ 74 (466)
.+++|||+|||+ ++++++|+++|++||+|++|+|++++.|+++||||||+|.++++|++||+.++. |.+ +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 478999999999 999999999999999999999999999999999999999999999999998875 888 99
Q ss_pred EEEeecCCcchh
Q 012289 75 VEAKKAVPRDDQ 86 (466)
Q Consensus 75 I~V~~a~~~~~~ 86 (466)
|.|.++.+++..
T Consensus 85 l~V~~a~~~~~~ 96 (100)
T 3ns6_A 85 LFLYTMKDVERY 96 (100)
T ss_dssp CEEEESHHHHHH
T ss_pred EEEEECchhhhh
Confidence 999999876543
No 58
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=9.9e-18 Score=140.70 Aligned_cols=84 Identities=30% Similarity=0.477 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--C---CCceEE
Q 012289 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--I---DGRMVE 76 (466)
Q Consensus 2 ~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i---~Gr~I~ 76 (466)
+.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++|+||||+|.++++|++||+.++. + .++.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999999999999999999999999999999998876 5 789999
Q ss_pred EeecCCcch
Q 012289 77 AKKAVPRDD 85 (466)
Q Consensus 77 V~~a~~~~~ 85 (466)
|+++.++..
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987654
No 59
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=139.62 Aligned_cols=85 Identities=28% Similarity=0.472 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHHh-cc--CCCceEEE
Q 012289 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKD-RNTGRARGFGFVVFADPAVAEIVIQEK-HN--IDGRMVEA 77 (466)
Q Consensus 2 ~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d-~~tg~srGfaFVeF~~~e~A~~Al~~~-~~--i~Gr~I~V 77 (466)
+.+.++|||+|||+++++++|+++|++||+|++|+|+++ +.++++++||||+|.++++|++||+.+ +. |.++.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 356799999999999999999999999999999999999 788999999999999999999999987 54 89999999
Q ss_pred eecCCcchh
Q 012289 78 KKAVPRDDQ 86 (466)
Q Consensus 78 ~~a~~~~~~ 86 (466)
+++.++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999877543
No 60
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=2.3e-17 Score=136.18 Aligned_cols=84 Identities=24% Similarity=0.474 Sum_probs=78.4
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecCC
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAVP 82 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~~ 82 (466)
+++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.++. ++++.|.|+++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 68999999999999999999999999999999999999999999999999999999999998876 8999999999998
Q ss_pred cchhhh
Q 012289 83 RDDQIV 88 (466)
Q Consensus 83 ~~~~~~ 88 (466)
+.....
T Consensus 82 ~~~~~~ 87 (96)
T 2x1f_A 82 SDISGV 87 (96)
T ss_dssp SSGGGH
T ss_pred CCCCCc
Confidence 765543
No 61
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=139.59 Aligned_cols=82 Identities=24% Similarity=0.614 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|++.++. |.++.|.|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4678999999999999999999999999999999999999999999999999999999999998766 89999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=140.10 Aligned_cols=83 Identities=36% Similarity=0.677 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|++.++. |+++.|.|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457999999999999999999999999999999999998 899999999999999999999998876 89999999999
Q ss_pred CCcchh
Q 012289 81 VPRDDQ 86 (466)
Q Consensus 81 ~~~~~~ 86 (466)
.++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 63
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=3.4e-17 Score=137.15 Aligned_cols=83 Identities=23% Similarity=0.403 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCC---ceEEE
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDG---RMVEA 77 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~G---r~I~V 77 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|++++ ++++++||||+|.++++|++||+.++. +.+ +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999998 699999999999999999999998876 677 99999
Q ss_pred eecCCcchh
Q 012289 78 KKAVPRDDQ 86 (466)
Q Consensus 78 ~~a~~~~~~ 86 (466)
+++.++...
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999877643
No 64
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=3e-18 Score=179.39 Aligned_cols=80 Identities=20% Similarity=0.473 Sum_probs=73.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
.+.++|||+|||+.||+++|+++|++||+|+.|.|+.|+.+++++|||||+|+++++|++||++|+.. |.++.|.|.+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999998875 67777887765
Q ss_pred C
Q 012289 182 G 182 (466)
Q Consensus 182 ~ 182 (466)
.
T Consensus 180 ~ 180 (437)
T 3pgw_S 180 R 180 (437)
T ss_pred C
Confidence 4
No 65
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=137.32 Aligned_cols=82 Identities=26% Similarity=0.530 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|+++ ++++++||||+|.++++|++||+.++. |.++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 56899999999999999999999999999999999998 799999999999999999999998875 89999999999
Q ss_pred CCcchh
Q 012289 81 VPRDDQ 86 (466)
Q Consensus 81 ~~~~~~ 86 (466)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 877643
No 66
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=136.91 Aligned_cols=82 Identities=28% Similarity=0.417 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeE-EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCce----E
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVV-EAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRM----V 75 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~-~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~----I 75 (466)
.+.++|||+|||++++|++|+++|++||+|+ +|+|++++.++++++||||+|.++++|++|++.++. +.++. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4679999999999999999999999999999 999999999999999999999999999999998776 78888 8
Q ss_pred EEeecCCcc
Q 012289 76 EAKKAVPRD 84 (466)
Q Consensus 76 ~V~~a~~~~ 84 (466)
.|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 888887653
No 67
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.8e-18 Score=140.10 Aligned_cols=86 Identities=28% Similarity=0.556 Sum_probs=79.6
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.++. +.++.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4568999999999999999999999999999999999998999999999999999999999998876 89999999999
Q ss_pred CCcchhhh
Q 012289 81 VPRDDQIV 88 (466)
Q Consensus 81 ~~~~~~~~ 88 (466)
.++.....
T Consensus 86 ~~~~~~~~ 93 (104)
T 1p1t_A 86 ASEKNKEE 93 (104)
T ss_dssp TCTTHHHH
T ss_pred CCccchhh
Confidence 98776544
No 68
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.7e-17 Score=142.96 Aligned_cols=87 Identities=20% Similarity=0.355 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCC---eEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEE
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGE---VVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEA 77 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~---V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V 77 (466)
.+.++|||+|||++++|++|+++|++||+ |+.|+|++++. +++||||||+|.++++|++||+ ++. |.+|.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 46789999999999999999999999999 89999999987 9999999999999999999999 654 89999999
Q ss_pred eecCCcchhhhhcc
Q 012289 78 KKAVPRDDQIVLNR 91 (466)
Q Consensus 78 ~~a~~~~~~~~~~~ 91 (466)
.++.+++.......
T Consensus 93 ~~a~~~~~~~~~~~ 106 (118)
T 2db1_A 93 FKSHRTEMDWVLKH 106 (118)
T ss_dssp EEECHHHHHHHHHT
T ss_pred EECCHHHHHHHHHH
Confidence 99987765544433
No 69
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=3.5e-17 Score=136.89 Aligned_cols=81 Identities=15% Similarity=0.354 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++|+ |++|+|++++.+++++|||||+|.++++|++|| +++. |.++.|.|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 5678999999999999999999999996 999999999999999999999999999999999 7765 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 70
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.7e-17 Score=137.00 Aligned_cols=82 Identities=27% Similarity=0.374 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++ ++++++||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 457899999999999999999999999999999999998 499999999999999999999998876 89999999998
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 71
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=143.94 Aligned_cols=84 Identities=25% Similarity=0.402 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++|+||||+|.++++|++||+.++. |.++.|.|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3568999999999999999999999999999999999999999999999999999999999998876 99999999999
Q ss_pred CCcchh
Q 012289 81 VPRDDQ 86 (466)
Q Consensus 81 ~~~~~~ 86 (466)
.++...
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 877543
No 72
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=136.55 Aligned_cols=83 Identities=25% Similarity=0.500 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhc-CCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc---CCCceEEEe
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFST-YGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN---IDGRMVEAK 78 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~-~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~---i~Gr~I~V~ 78 (466)
...++|||+|||+++++++|+++|++ ||+|++|+|++++ ++++++||||+|.++++|++||+.++. |.++.|.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45789999999999999999999999 9999999999998 899999999999999999999998865 889999999
Q ss_pred ecCCcchh
Q 012289 79 KAVPRDDQ 86 (466)
Q Consensus 79 ~a~~~~~~ 86 (466)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99876543
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=2.6e-17 Score=144.15 Aligned_cols=82 Identities=30% Similarity=0.503 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++|+||||+|.++++|++||+.++. |++++|.|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999998876 89999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8764
No 74
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=134.50 Aligned_cols=79 Identities=28% Similarity=0.509 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++. +++++||||+|.++++|++|++.++. |+++.|.|+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4678999999999999999999999999999999999986 99999999999999999999998765 89999999987
Q ss_pred CC
Q 012289 81 VP 82 (466)
Q Consensus 81 ~~ 82 (466)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 75
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=139.97 Aligned_cols=84 Identities=23% Similarity=0.399 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeE--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCC
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVV--------EAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDG 72 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~--------~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~G 72 (466)
.+.++|||+|||+++++++|+++|++||+|+ .|+|++++.++++++||||+|.++++|++||+.++. |.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4679999999999999999999999999999 699999999999999999999999999999998766 899
Q ss_pred ceEEEeecCCcchh
Q 012289 73 RMVEAKKAVPRDDQ 86 (466)
Q Consensus 73 r~I~V~~a~~~~~~ 86 (466)
+.|.|+++.++...
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999877643
No 76
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=138.04 Aligned_cols=84 Identities=26% Similarity=0.412 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCC-eEEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhc----cCCCceEE
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGE-VVEAVIM-KDRNTGRARGFGFVVFADPAVAEIVIQEKH----NIDGRMVE 76 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~-V~~v~i~-~d~~tg~srGfaFVeF~~~e~A~~Al~~~~----~i~Gr~I~ 76 (466)
.+.++|||+|||+++++++|+++|++||+ |++|+|+ +++.++++||||||+|.++++|++|++.++ .++++.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999998 888889999999999999999999999875 38999999
Q ss_pred EeecCCcchh
Q 012289 77 AKKAVPRDDQ 86 (466)
Q Consensus 77 V~~a~~~~~~ 86 (466)
|+++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999887654
No 77
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=137.34 Aligned_cols=82 Identities=21% Similarity=0.432 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEee
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNT-GRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKK 79 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~t-g~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~ 79 (466)
...++|||+|||++++|++|+++|++|| |++|+|++++.+ ++++|||||+|.++++|++|| .++. |.++.|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4578999999999999999999999999 999999999988 999999999999999999999 7765 8999999999
Q ss_pred cCCcchh
Q 012289 80 AVPRDDQ 86 (466)
Q Consensus 80 a~~~~~~ 86 (466)
+.++...
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9877643
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.6e-17 Score=138.67 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc--cCCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH--NIDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~--~i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++. +++||||||+|.++++|++||+ ++ .++++.|.|+++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4578999999999999999999999999999999999987 9999999999999999999998 54 499999999988
Q ss_pred CCcchh
Q 012289 81 VPRDDQ 86 (466)
Q Consensus 81 ~~~~~~ 86 (466)
......
T Consensus 87 ~~~~~~ 92 (103)
T 1s79_A 87 DDYFAK 92 (103)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 764433
No 79
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7e-17 Score=134.92 Aligned_cols=83 Identities=25% Similarity=0.547 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEee
Q 012289 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKK 79 (466)
Q Consensus 2 ~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~ 79 (466)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++. .+++||||+|.++++|++||+.++. |+++.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999999999865 3899999999999999999998775 8999999999
Q ss_pred cCCcchh
Q 012289 80 AVPRDDQ 86 (466)
Q Consensus 80 a~~~~~~ 86 (466)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9877543
No 80
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=134.42 Aligned_cols=79 Identities=28% Similarity=0.470 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCC
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVE--------AVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDG 72 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~--------v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~G 72 (466)
...++|||+|||+++++++|+++|++||+|++ |+|++++.++++||||||+|.++++|++|++.++. +.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46799999999999999999999999999999 99999999999999999999999999999998766 899
Q ss_pred ceEEEeecC
Q 012289 73 RMVEAKKAV 81 (466)
Q Consensus 73 r~I~V~~a~ 81 (466)
+.|.|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 81
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=3.3e-17 Score=138.51 Aligned_cols=82 Identities=22% Similarity=0.390 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4578999999999999999999999999999999999999999999999999999999999998876 89999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.++.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 8764
No 82
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6e-17 Score=135.30 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+ +|+||||+|.++++|++||+.++. |.++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 56799999999999999999999999999999999998653 689999999999999999998876 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 87653
No 83
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=148.20 Aligned_cols=83 Identities=22% Similarity=0.467 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCC--CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEe
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYG--EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAK 78 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G--~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~ 78 (466)
.+.++|||+|||++++|++|+++|++|| +|++|+|++|+.++++||||||+|.++++|++||+.++. |+++.|.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 999999999999999999999999999999999998865 899999999
Q ss_pred ecCCcch
Q 012289 79 KAVPRDD 85 (466)
Q Consensus 79 ~a~~~~~ 85 (466)
++.++..
T Consensus 133 ~a~~~~~ 139 (156)
T 3n9u_C 133 PATRQNL 139 (156)
T ss_dssp ECCHHHH
T ss_pred EcCCCcc
Confidence 9986543
No 84
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=2.2e-17 Score=141.43 Aligned_cols=79 Identities=23% Similarity=0.467 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++|+||||+|.++++|++||+.++. |+++.|+|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4578999999999999999999999999999999999999999999999999999999999998876 88999999886
Q ss_pred C
Q 012289 81 V 81 (466)
Q Consensus 81 ~ 81 (466)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 85
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=141.04 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHHhhcCCCe-EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEe
Q 012289 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEV-VEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAK 78 (466)
Q Consensus 2 ~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V-~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~ 78 (466)
+.+.++|||+|||++++|++|+++|++||.| ..|+|++++ ++++||||||+|.++++|++||+. +. |.++.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3568999999999999999999999999999 889999998 899999999999999999999986 44 999999999
Q ss_pred ecCCcchhhh
Q 012289 79 KAVPRDDQIV 88 (466)
Q Consensus 79 ~a~~~~~~~~ 88 (466)
++.+++....
T Consensus 90 ~a~~~~~~~~ 99 (114)
T 2cpy_A 90 VVTLEDMREI 99 (114)
T ss_dssp EECHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9987765544
No 86
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=136.94 Aligned_cols=81 Identities=15% Similarity=0.252 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
...++|||+|||++++|++|+++|++||+|+++++++++.++++++||||+|.++++|++||+.++. |.++.|.|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3468999999999999999999999999999999999999999999999999999999999998875 89999999998
Q ss_pred CCc
Q 012289 81 VPR 83 (466)
Q Consensus 81 ~~~ 83 (466)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 87
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.8e-17 Score=136.24 Aligned_cols=80 Identities=15% Similarity=0.280 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
...++|||+|||++++|++|+++|++||+|+++++++++.++++++||||+|.++++|++||+.++. |++++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3468999999999999999999999999999999999999999999999999999999999998765 89999999987
Q ss_pred CC
Q 012289 81 VP 82 (466)
Q Consensus 81 ~~ 82 (466)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 88
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=6.6e-17 Score=145.40 Aligned_cols=82 Identities=26% Similarity=0.411 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999999999999999999999999999999998765 89999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.++.
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
No 89
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-17 Score=133.03 Aligned_cols=79 Identities=24% Similarity=0.515 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
++.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.++. ++++.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 5789999999999999999999999999999999999999999999999999999999999998765 88888877654
Q ss_pred C
Q 012289 81 V 81 (466)
Q Consensus 81 ~ 81 (466)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 90
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=3.6e-17 Score=132.19 Aligned_cols=81 Identities=25% Similarity=0.469 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCC-cccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGR-ARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~-srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
+.++|||+|||+++++++|+++|++||+|.+|+|++++.++. +++||||+|.++++|++|++.++. ++++.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 578999999999999999999999999999999999987766 999999999999999999998776 89999999998
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 91
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4e-17 Score=137.15 Aligned_cols=82 Identities=24% Similarity=0.417 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-ccCCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVE-AVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK-HNIDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~-v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~-~~i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++||+|++ |+|+++ .+++++|||||+|.++++|++||+.. +.|.+|.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 46799999999999999999999999999998 888888 68999999999999999999999962 3389999999998
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.+++.
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 76543
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.6e-17 Score=138.28 Aligned_cols=79 Identities=11% Similarity=0.198 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc----cCCCceEEE
Q 012289 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH----NIDGRMVEA 77 (466)
Q Consensus 2 ~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~----~i~Gr~I~V 77 (466)
+.+.++|||+|||++++|+||+++|++||+|++|+|+++ ||||||+|+++++|++|++.++ .|.+++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 356899999999999999999999999999999999875 6899999999999999999764 389999999
Q ss_pred eecCCcchh
Q 012289 78 KKAVPRDDQ 86 (466)
Q Consensus 78 ~~a~~~~~~ 86 (466)
.++.++...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 93
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=7.9e-17 Score=131.56 Aligned_cols=81 Identities=26% Similarity=0.459 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|+++ ++++++||||+|.++++|++|++.++. |+++.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 57899999999999999999999999999999999984 689999999999999999999998765 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.+...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87653
No 94
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8e-17 Score=131.50 Aligned_cols=79 Identities=16% Similarity=0.368 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++| +|++|+|+++ .+++++|||||+|.++++|++||+ ++. |.++.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 567999999999999999999999999 9999999999 679999999999999999999999 876 89999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8764
No 95
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=4.9e-17 Score=140.81 Aligned_cols=84 Identities=21% Similarity=0.398 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4578999999999999999999999999999999999998999999999999999999999998766 89999999999
Q ss_pred CCcchh
Q 012289 81 VPRDDQ 86 (466)
Q Consensus 81 ~~~~~~ 86 (466)
.++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876543
No 96
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=2.2e-17 Score=145.70 Aligned_cols=118 Identities=16% Similarity=0.263 Sum_probs=75.9
Q ss_pred EEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecCCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHH
Q 012289 49 FGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126 (466)
Q Consensus 49 faFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F 126 (466)
++|++|+++..+.+|++.++. ..++. .+.... ..+.....++|||+|||+++|+++|+++|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~----------------~~~~~~~~~~l~V~nLp~~~te~~L~~~F 68 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR----------------PPPDVEGMTSLKVDNLTYRTSPDTLRRVF 68 (135)
T ss_dssp ------------------------------CCSCC----------------SCSSGGGCCCEEEECCCSSCHHHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCC----------------CCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 456666666667777766544 22221 111111 12233457899999999999999999999
Q ss_pred hhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCCCC
Q 012289 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLGGY 183 (466)
Q Consensus 127 ~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g~~ 183 (466)
++||+|+.|+|++|+.++++++||||+|+++++|++||+.|+.. +.++++++.+...
T Consensus 69 ~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 69 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 99999999999999999999999999999999999999987765 7788888877654
No 97
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=3.9e-17 Score=144.55 Aligned_cols=84 Identities=18% Similarity=0.333 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCC---eEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEE
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGE---VVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEA 77 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~---V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V 77 (466)
.+.++|||+|||+++||++|+++|++||+ |++|+|++|+. +++||||||+|.++++|++||+ ++. |.+|.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 56789999999999999999999999999 89999999987 9999999999999999999999 654 99999999
Q ss_pred eecCCcchhhh
Q 012289 78 KKAVPRDDQIV 88 (466)
Q Consensus 78 ~~a~~~~~~~~ 88 (466)
.++.+++....
T Consensus 120 ~~a~~~e~~~~ 130 (136)
T 2hgl_A 120 FKSHRTEMDWV 130 (136)
T ss_dssp EECCHHHHHHH
T ss_pred EECChHHHHHH
Confidence 99987665443
No 98
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=136.28 Aligned_cols=78 Identities=14% Similarity=0.376 Sum_probs=71.7
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
+.++|||+|||+++|+++|+++|++||+|++|+|++|+.++++||||||+|+++++|++|++.|++. +.++++++.++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999987765 77788887654
No 99
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-17 Score=137.15 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|+||+++|++||.| +|+|++++ ++++||||||+|+++++|++||+ ++. |.+|.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 457899999999999999999999999955 99999998 79999999999999999999995 443 89999999988
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.+.+
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 100
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=1e-16 Score=134.72 Aligned_cols=78 Identities=24% Similarity=0.473 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
...++|||+|||++++|++|+++|++||+|++|+|++++ ++++++||||+|.++++|++||+.++. |.++.|.|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457899999999999999999999999999999999998 899999999999999999999998876 89999999987
Q ss_pred C
Q 012289 81 V 81 (466)
Q Consensus 81 ~ 81 (466)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 101
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-17 Score=140.34 Aligned_cols=80 Identities=24% Similarity=0.388 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc--cCCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH--NIDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~--~i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|+||+++|++| .|++|+|+++++ +++||||||+|.++++|++||+ ++ .|.+|.|+|.++
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEEC
Confidence 456799999999999999999999999 999999999986 9999999999999999999994 54 499999999998
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.+++.
T Consensus 91 ~~~~~ 95 (109)
T 2dnn_A 91 TERQW 95 (109)
T ss_dssp CHHHH
T ss_pred Cccch
Confidence 76543
No 102
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-17 Score=129.98 Aligned_cols=76 Identities=45% Similarity=0.865 Sum_probs=71.3
Q ss_pred CEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc-cCCCceEEEeecC
Q 012289 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH-NIDGRMVEAKKAV 81 (466)
Q Consensus 6 ~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~-~i~Gr~I~V~~a~ 81 (466)
++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|++.++ .++++.|.|++|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEecC
Confidence 579999999999999999999999999999999999999999999999999999999999665 5899999998873
No 103
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.4e-17 Score=133.45 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCccCcHHHHH----HHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEE
Q 012289 3 SDNGKLFIGGISWDTNEERLK----EYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVE 76 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~----~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~ 76 (466)
.+.++|||+|||++++|++|+ ++|++||+|++|+|++++.+ |+||||+|.++++|++||+.++. |++++|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 467899999999999999999 99999999999999999875 89999999999999999998876 8999999
Q ss_pred EeecCCcch
Q 012289 77 AKKAVPRDD 85 (466)
Q Consensus 77 V~~a~~~~~ 85 (466)
|+++.++..
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987653
No 104
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=135.87 Aligned_cols=85 Identities=31% Similarity=0.534 Sum_probs=77.9
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCccc
Q 012289 99 SPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRS 178 (466)
Q Consensus 99 ~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~ 178 (466)
...+...++|||+|||+++|+++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.++..+.+++|++
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 90 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 90 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEE
Confidence 34455788999999999999999999999999999999999999999999999999999999999999999888999988
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 91 ~~a~~ 95 (116)
T 2cqd_A 91 NLAYL 95 (116)
T ss_dssp EESTT
T ss_pred EEccc
Confidence 77543
No 105
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.4e-17 Score=137.80 Aligned_cols=81 Identities=44% Similarity=0.890 Sum_probs=75.4
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-ccCCCceEEEeecCCc
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK-HNIDGRMVEAKKAVPR 83 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~-~~i~Gr~I~V~~a~~~ 83 (466)
.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.. +.|+++.|.|+++.++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 489999999999999999999999999999999999999999999999999999999999862 2399999999999887
Q ss_pred ch
Q 012289 84 DD 85 (466)
Q Consensus 84 ~~ 85 (466)
..
T Consensus 107 ~~ 108 (116)
T 1x4b_A 107 EE 108 (116)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 106
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=4.1e-17 Score=128.26 Aligned_cols=73 Identities=47% Similarity=0.816 Sum_probs=68.6
Q ss_pred EEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 7 ~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
+|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|++ ++. ++++.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 544 89999999875
No 107
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5e-17 Score=138.42 Aligned_cols=82 Identities=21% Similarity=0.401 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| .++. |.++.|.|+++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3589999999999999999999999999999999999999999999999999999999999 7765 899999999998
Q ss_pred Ccchh
Q 012289 82 PRDDQ 86 (466)
Q Consensus 82 ~~~~~ 86 (466)
++...
T Consensus 103 ~~~~~ 107 (114)
T 2cq4_A 103 AEKNR 107 (114)
T ss_dssp HHHHH
T ss_pred CCccC
Confidence 76543
No 108
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=1.1e-16 Score=144.03 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=73.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
.+.++|||+|||+++|+++|+++|++||+|+.|+|++|+.++++++||||+|+++++|++||+.|+.. +.++.|+|.+.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999988765 77788888765
Q ss_pred C
Q 012289 182 G 182 (466)
Q Consensus 182 ~ 182 (466)
.
T Consensus 117 ~ 117 (156)
T 1h2v_Z 117 A 117 (156)
T ss_dssp S
T ss_pred C
Confidence 4
No 109
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.1e-17 Score=141.95 Aligned_cols=87 Identities=21% Similarity=0.334 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCe----EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH-hccCCCceEEE
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEV----VEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE-KHNIDGRMVEA 77 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V----~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~-~~~i~Gr~I~V 77 (466)
.+.++|||+|||++++|+||+++|++||+| ..|+|++++ ++++||||||+|.++++|++||+. .+.|.+|.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 567899999999999999999999999986 689999985 799999999999999999999985 23499999999
Q ss_pred eecCCcchhhhhc
Q 012289 78 KKAVPRDDQIVLN 90 (466)
Q Consensus 78 ~~a~~~~~~~~~~ 90 (466)
..+.+++......
T Consensus 100 ~~a~~~e~~~~~~ 112 (123)
T 2dha_A 100 FRSTAAEVQQVLN 112 (123)
T ss_dssp EEECHHHHHHHHH
T ss_pred EECCHHHHHHHHH
Confidence 9998776555443
No 110
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=9.2e-17 Score=136.82 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=73.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++||+.|+.. +.++.|++.+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45779999999999999999999999999999999999999999999999999999999999988775 78888888665
Q ss_pred C
Q 012289 182 G 182 (466)
Q Consensus 182 ~ 182 (466)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 3
No 111
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=136.45 Aligned_cols=81 Identities=20% Similarity=0.416 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhccCCCceEEEee
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNT---GRARGFGFVVFADPAVAEIVIQEKHNIDGRMVEAKK 79 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~t---g~srGfaFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~ 79 (466)
.+.++|||+|||++++|++|+++|++||+|+ ++++.++.+ +++||||||+|.++++|++||+.++.++++.+.+..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 5689999999999999999999999999999 888888777 799999999999999999999999889999998876
Q ss_pred cCCcc
Q 012289 80 AVPRD 84 (466)
Q Consensus 80 a~~~~ 84 (466)
+.+..
T Consensus 85 ~~~~~ 89 (114)
T 2dnl_A 85 SPTIK 89 (114)
T ss_dssp CSSSC
T ss_pred CCCcC
Confidence 65443
No 112
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=6e-17 Score=135.04 Aligned_cols=80 Identities=23% Similarity=0.435 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecC-CCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEee
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDR-NTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKK 79 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~-~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~ 79 (466)
...++|||+|||+++++++|+++|++|| |++|+|++++ .+++++|||||+|.++++|++|| .++. |.++.|.|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4579999999999999999999999999 9999999998 68999999999999999999999 7765 8999999999
Q ss_pred cCCcc
Q 012289 80 AVPRD 84 (466)
Q Consensus 80 a~~~~ 84 (466)
+.++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98764
No 113
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=133.83 Aligned_cols=80 Identities=19% Similarity=0.391 Sum_probs=72.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|+.+ +++++||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 46789999999999999999999999999999999664 45899999999999999999998876 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87653
No 114
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=2.1e-16 Score=136.62 Aligned_cols=82 Identities=23% Similarity=0.434 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|++.++. |+++.|.|+++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456899999999999999999999999999999999998 899999999999999999999998876 99999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 87543
No 115
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-17 Score=142.46 Aligned_cols=82 Identities=16% Similarity=0.394 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++||+|+++.++.++.+++++|||||+|.++++|++||+ ++. |.++.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999987777777789999999999999999999999 765 99999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.+++.
T Consensus 102 ~~~~~ 106 (124)
T 1wel_A 102 TKKGM 106 (124)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87664
No 116
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=133.70 Aligned_cols=80 Identities=25% Similarity=0.478 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--C--------CC
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--I--------DG 72 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i--------~G 72 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++ ++++++||||+|.++++|++||+.++. | .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 467999999999999999999999999999999999998 899999999999999999999998876 5 46
Q ss_pred ceEEEeecCCc
Q 012289 73 RMVEAKKAVPR 83 (466)
Q Consensus 73 r~I~V~~a~~~ 83 (466)
++|.|+++.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 77888887754
No 117
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-17 Score=137.56 Aligned_cols=85 Identities=19% Similarity=0.315 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCC---eEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEE
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGE---VVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEA 77 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~---V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V 77 (466)
.+.++|||+|||++++|++|+++|++||. |.+|+|++++. +++||||||+|.++++|++||+ ++. |.+|.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 56789999999999999999999999998 89999999987 9999999999999999999999 654 88999999
Q ss_pred eecCCcchhhhh
Q 012289 78 KKAVPRDDQIVL 89 (466)
Q Consensus 78 ~~a~~~~~~~~~ 89 (466)
.++.+++.....
T Consensus 87 ~~a~~~~~~~~~ 98 (107)
T 2lmi_A 87 YEINNEDVDALM 98 (107)
T ss_dssp EECCHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 999877655443
No 118
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=6.8e-17 Score=141.42 Aligned_cols=82 Identities=18% Similarity=0.342 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc------cCCCce
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVE--AVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH------NIDGRM 74 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~--v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~------~i~Gr~ 74 (466)
...++|||+|||++++|++|+++|++||+|+. |+|++|+.|+++||||||+|.++ +|++||+.++ .|+++.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999976 99999999999999999999999 9999999875 468999
Q ss_pred EEEeecCCcch
Q 012289 75 VEAKKAVPRDD 85 (466)
Q Consensus 75 I~V~~a~~~~~ 85 (466)
|.|+++.++..
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 119
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1e-16 Score=136.19 Aligned_cols=82 Identities=22% Similarity=0.371 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCccCcHHHHH---HHhhcCCCeEEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHHhcc--CCCce
Q 012289 3 SDNGKLFIGGISWDTNEERLK---EYFSTYGEVVEAVIMKDRNTG---RARGFGFVVFADPAVAEIVIQEKHN--IDGRM 74 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~---~~F~~~G~V~~v~i~~d~~tg---~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~ 74 (466)
.+.++|||+|||++++|++|+ ++|++||+|++|+|++++.++ +++|||||+|.++++|++||+.++. |++++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 357899999999999999999 999999999999999987754 5679999999999999999998876 89999
Q ss_pred EEEeecCCcc
Q 012289 75 VEAKKAVPRD 84 (466)
Q Consensus 75 I~V~~a~~~~ 84 (466)
|.|+++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998775
No 120
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=136.41 Aligned_cols=78 Identities=12% Similarity=0.205 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc----cCCCceEEEe
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH----NIDGRMVEAK 78 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~----~i~Gr~I~V~ 78 (466)
...++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|+++++|++|++.++ .|.+++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45789999999999999999999999999999999875 6899999999999999999764 4899999999
Q ss_pred ecCCcchh
Q 012289 79 KAVPRDDQ 86 (466)
Q Consensus 79 ~a~~~~~~ 86 (466)
++.+++..
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 99876543
No 121
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.66 E-value=2e-16 Score=142.18 Aligned_cols=82 Identities=29% Similarity=0.462 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
..++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++. |.++.|.|+++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999999998999999999999999999999998876 999999999998
Q ss_pred Ccch
Q 012289 82 PRDD 85 (466)
Q Consensus 82 ~~~~ 85 (466)
++..
T Consensus 149 ~~~~ 152 (158)
T 2kn4_A 149 YGRP 152 (158)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7643
No 122
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=132.57 Aligned_cols=77 Identities=12% Similarity=0.187 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc----cCCCceEEEe
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH----NIDGRMVEAK 78 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~----~i~Gr~I~V~ 78 (466)
...++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|+++++|++|++.++ .+.+++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999998874 6899999999999999999663 2899999999
Q ss_pred ecCCcch
Q 012289 79 KAVPRDD 85 (466)
Q Consensus 79 ~a~~~~~ 85 (466)
++.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9987654
No 123
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=138.17 Aligned_cols=78 Identities=26% Similarity=0.486 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++|+||||+|.++++|++||+.++. |+++.|.|++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4679999999999999999999999999999999999999999999999999999999999998876 89999999875
No 124
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=3.1e-17 Score=133.59 Aligned_cols=80 Identities=28% Similarity=0.610 Sum_probs=71.2
Q ss_pred CEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecCCc
Q 012289 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAVPR 83 (466)
Q Consensus 6 ~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~~~ 83 (466)
++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.+++ |++|++.++. ++++.|.|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 9999998876 89999999999876
Q ss_pred chh
Q 012289 84 DDQ 86 (466)
Q Consensus 84 ~~~ 86 (466)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 125
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.9e-16 Score=131.72 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc--c--CCCceEEEe
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH--N--IDGRMVEAK 78 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~--~--i~Gr~I~V~ 78 (466)
...++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|+++++|++|++.++ . |.+++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999998764 6899999999999999999763 2 899999999
Q ss_pred ecCCcch
Q 012289 79 KAVPRDD 85 (466)
Q Consensus 79 ~a~~~~~ 85 (466)
++.++..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987654
No 126
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.7e-16 Score=128.41 Aligned_cols=82 Identities=35% Similarity=0.733 Sum_probs=74.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPL 180 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~ 180 (466)
...+.++|||+|||+++++++|+++|++||+|+.|+|++|+.++++++||||+|+++++|++||++....+.++.+++.+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999655678888888866
Q ss_pred CC
Q 012289 181 GG 182 (466)
Q Consensus 181 g~ 182 (466)
..
T Consensus 86 a~ 87 (99)
T 2dgs_A 86 AE 87 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 127
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=6.9e-16 Score=135.81 Aligned_cols=84 Identities=23% Similarity=0.502 Sum_probs=75.7
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCccc
Q 012289 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRS 178 (466)
Q Consensus 100 ~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~ 178 (466)
+.+...++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||++|+.. +.++.|++
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999998875 77788888
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 117 ~~a~~ 121 (139)
T 1u6f_A 117 ALAAS 121 (139)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 76543
No 128
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=7.5e-17 Score=142.24 Aligned_cols=83 Identities=29% Similarity=0.457 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++||||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3568999999999999999999999999999999999998999999999999999999999997765 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.+...
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 129
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=1.3e-16 Score=153.24 Aligned_cols=81 Identities=21% Similarity=0.417 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCC--CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEee
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYG--EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKK 79 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G--~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~ 79 (466)
+.++|||+|||++++|++|+++|++|| +|++|+|++|+.++++||||||+|.++++|++||+.++. |+++.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568899999999999999999999999 999999999999999999999999999999999998765 9999999999
Q ss_pred cCCcc
Q 012289 80 AVPRD 84 (466)
Q Consensus 80 a~~~~ 84 (466)
+.+..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87543
No 130
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=4.8e-17 Score=135.11 Aligned_cols=80 Identities=13% Similarity=0.278 Sum_probs=71.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCC--eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-----CCCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGT--ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-----LSPGP 175 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~--I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-----~~~~~ 175 (466)
....+|||+|||+++|+|+|+++|++||. |++|+|++|+.|+++||||||+|+++++|++||+++++. +.+++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45679999999999999999999999995 679999999999999999999999999999999999875 66788
Q ss_pred cccCCCC
Q 012289 176 TRSPLGG 182 (466)
Q Consensus 176 ~r~~~g~ 182 (466)
+++.+.+
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 8776643
No 131
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=2.7e-16 Score=135.78 Aligned_cols=80 Identities=18% Similarity=0.480 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| +++. |+++.|.|+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999989999999999999999999999 6765 899999999988
Q ss_pred Ccc
Q 012289 82 PRD 84 (466)
Q Consensus 82 ~~~ 84 (466)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 132
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=1.6e-16 Score=128.44 Aligned_cols=79 Identities=34% Similarity=0.614 Sum_probs=72.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~ 179 (466)
.+.+.++|||+|||+++++++|+++|++||+|+.|+|++|+.++++++||||+|+++++|++|+++++..+.++++++.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999988877888777653
No 133
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=130.41 Aligned_cols=80 Identities=23% Similarity=0.469 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEee
Q 012289 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKK 79 (466)
Q Consensus 2 ~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~ 79 (466)
..+.++|||+|||++++|++|+++|++||+| +|+++ .++++++||||+|.++++|++||+.++. |+++.|.|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3568999999999999999999999999977 56666 5789999999999999999999998876 8999999999
Q ss_pred cCCcch
Q 012289 80 AVPRDD 85 (466)
Q Consensus 80 a~~~~~ 85 (466)
+.++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987653
No 134
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.4e-16 Score=131.04 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCC-----ceE
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDG-----RMV 75 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~G-----r~I 75 (466)
...++|||+|||++++|++|+++|++||+|++|+|+++ +||||+|.++++|++||+.++. |++ +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999886 7999999999999999998876 778 999
Q ss_pred EEeecCCcch
Q 012289 76 EAKKAVPRDD 85 (466)
Q Consensus 76 ~V~~a~~~~~ 85 (466)
.|+++.++..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999988654
No 135
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=9.4e-17 Score=140.25 Aligned_cols=80 Identities=25% Similarity=0.471 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeE--EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-ccCCCceEEEee
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVV--EAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK-HNIDGRMVEAKK 79 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~--~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~-~~i~Gr~I~V~~ 79 (466)
.+.++|||+|||++++|++|+++|++| .|+ +|+|++|++ +++||||||+|.++++|++||+.. ..|.+|.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 457899999999999999999999999 777 899999987 999999999999999999999853 348999999998
Q ss_pred cCCcc
Q 012289 80 AVPRD 84 (466)
Q Consensus 80 a~~~~ 84 (466)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87554
No 136
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.1e-16 Score=126.98 Aligned_cols=80 Identities=29% Similarity=0.536 Sum_probs=72.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
...++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++|++.|+.. +.++++++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999999999999999999999999999999999977664 77888888665
Q ss_pred C
Q 012289 182 G 182 (466)
Q Consensus 182 ~ 182 (466)
.
T Consensus 83 ~ 83 (95)
T 2dnz_A 83 T 83 (95)
T ss_dssp S
T ss_pred c
Confidence 4
No 137
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.6e-16 Score=133.41 Aligned_cols=81 Identities=26% Similarity=0.571 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEee
Q 012289 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKK 79 (466)
Q Consensus 2 ~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~ 79 (466)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++ +.+|+||||+|.++++|++|++.++. |+++.|.|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3568999999999999999999999999999999999986 35899999999999999999998775 8999999999
Q ss_pred cCCcc
Q 012289 80 AVPRD 84 (466)
Q Consensus 80 a~~~~ 84 (466)
+.++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98763
No 138
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=6.9e-17 Score=126.84 Aligned_cols=74 Identities=38% Similarity=0.679 Sum_probs=68.9
Q ss_pred EEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-ccCCCceEEEeec
Q 012289 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK-HNIDGRMVEAKKA 80 (466)
Q Consensus 7 ~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~-~~i~Gr~I~V~~a 80 (466)
+|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|++.. +.+.++.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5999999999999999999999999999999999999999999999999999999999853 4499999998875
No 139
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=7.7e-16 Score=131.23 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=74.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
....++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.|+.. +.++.+++.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346689999999999999999999999999999999999999999999999999999999999887765 7788888877
Q ss_pred CCC
Q 012289 181 GGY 183 (466)
Q Consensus 181 g~~ 183 (466)
...
T Consensus 102 a~~ 104 (115)
T 2cpz_A 102 KRS 104 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 140
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=9.8e-17 Score=131.76 Aligned_cols=78 Identities=15% Similarity=0.305 Sum_probs=71.2
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC--CCCCCCcccCCC
Q 012289 105 TRKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK--ELSPGPTRSPLG 181 (466)
Q Consensus 105 ~~~LfV~nLp~~vteedLk~~F~~fG-~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~--~~~~~~~r~~~g 181 (466)
+++|||+|||+++||++|+++|++|| +|++|+|++|+.|+++||||||+|+++++|++||++++. .+.++++++.+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 899999999999999999999999999999999998754 378888888765
Q ss_pred C
Q 012289 182 G 182 (466)
Q Consensus 182 ~ 182 (466)
.
T Consensus 81 ~ 81 (91)
T 2lxi_A 81 D 81 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 141
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=1.9e-16 Score=152.04 Aligned_cols=78 Identities=19% Similarity=0.352 Sum_probs=71.2
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC-CCCCCCcccCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK-ELSPGPTRSPL 180 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG--~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~-~~~~~~~r~~~ 180 (466)
..++|||+|||+++||++|+++|++|| +|++|+|++|+.|+++||||||+|+++++|++||++|+. .+.++.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999998886 47888888866
Q ss_pred C
Q 012289 181 G 181 (466)
Q Consensus 181 g 181 (466)
.
T Consensus 147 a 147 (229)
T 3q2s_C 147 V 147 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.4e-16 Score=125.55 Aligned_cols=75 Identities=29% Similarity=0.578 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|+ |+||||+|.++++|++|++.++. ++++.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 568999999999999999999999999999999997 57999999999999999998875 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 143
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8e-16 Score=127.38 Aligned_cols=81 Identities=16% Similarity=0.336 Sum_probs=73.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCee-EEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCC----
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTIT-DVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGP---- 175 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~-~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~---- 175 (466)
....++|||+|||+++++++|+++|++||+|+ .|+|++|+.++++++||||+|+++++|++|++.|+.. +.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 9999999999999999999999999999999988876 67777
Q ss_pred cccCCCC
Q 012289 176 TRSPLGG 182 (466)
Q Consensus 176 ~r~~~g~ 182 (466)
+++.+..
T Consensus 86 l~v~~a~ 92 (99)
T 2div_A 86 FKLNYAT 92 (99)
T ss_dssp CCEEETT
T ss_pred EEEeecC
Confidence 7776644
No 144
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.64 E-value=7.5e-16 Score=129.04 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc----CCCceEEEe
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN----IDGRMVEAK 78 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~----i~Gr~I~V~ 78 (466)
..+++|||+|||++++|++|+++|++||+|++|+|++ .|+||||+|+++++|++|++.++. +.+|+|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4678999999999999999999999999999999985 368999999999999999998754 679999999
Q ss_pred ecCCcc
Q 012289 79 KAVPRD 84 (466)
Q Consensus 79 ~a~~~~ 84 (466)
++++++
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998654
No 145
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.6e-16 Score=126.64 Aligned_cols=82 Identities=27% Similarity=0.478 Sum_probs=74.0
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCccc
Q 012289 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRS 178 (466)
Q Consensus 100 ~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~ 178 (466)
..+.+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++|+++|+.. +.++++++
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34457889999999999999999999999999999999999999999999999999999999999988765 67777777
Q ss_pred CCC
Q 012289 179 PLG 181 (466)
Q Consensus 179 ~~g 181 (466)
.+.
T Consensus 90 ~~a 92 (95)
T 2cqc_A 90 SGP 92 (95)
T ss_dssp ECC
T ss_pred Eec
Confidence 654
No 146
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7e-16 Score=128.76 Aligned_cols=82 Identities=21% Similarity=0.348 Sum_probs=74.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
...+.++|||+|||+++++++|+++|++||+|+.|+|++++.++++++||||+|+++++|++||+.|+.. +.++.+++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999988875 677777776
Q ss_pred CCC
Q 012289 180 LGG 182 (466)
Q Consensus 180 ~g~ 182 (466)
+..
T Consensus 91 ~a~ 93 (103)
T 2cq0_A 91 WAK 93 (103)
T ss_dssp ESS
T ss_pred ECC
Confidence 654
No 147
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.2e-16 Score=129.80 Aligned_cols=80 Identities=40% Similarity=0.596 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|++|+++|++| .+|+|++++.++++++||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 567899999999999999999999977 4788899988999999999999999999999998766 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++.+
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 88764
No 148
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=6.6e-16 Score=129.49 Aligned_cols=83 Identities=25% Similarity=0.434 Sum_probs=74.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-C---CCCCc
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-L---SPGPT 176 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~---~~~~~ 176 (466)
.+...++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||++|+.. + .++++
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999999999999999999999999999999999999999999999988875 4 67788
Q ss_pred ccCCCCC
Q 012289 177 RSPLGGY 183 (466)
Q Consensus 177 r~~~g~~ 183 (466)
++.+...
T Consensus 89 ~v~~a~~ 95 (106)
T 2dgp_A 89 QVKPADS 95 (106)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 7766543
No 149
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=128.16 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=75.2
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCccc
Q 012289 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRS 178 (466)
Q Consensus 100 ~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~ 178 (466)
......++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.|+.. +.++++++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33456789999999999999999999999999999999999999999999999999999999999988765 77888888
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 90 ~~a~~ 94 (105)
T 1x5u_A 90 NKASA 94 (105)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 66543
No 150
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.2e-16 Score=131.90 Aligned_cols=76 Identities=12% Similarity=0.150 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCc-cCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc--c--CCCceEEE
Q 012289 3 SDNGKLFIGGISW-DTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH--N--IDGRMVEA 77 (466)
Q Consensus 3 ~d~~~LfVgnLP~-~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~--~--i~Gr~I~V 77 (466)
.+.++|||+|||+ +++|+||+++|++||+|++|+|+++ |+||||+|+++++|++|++.++ . |.+|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 9999999999999999999999875 3799999999999999999765 2 89999999
Q ss_pred eecCCcc
Q 012289 78 KKAVPRD 84 (466)
Q Consensus 78 ~~a~~~~ 84 (466)
.++..+.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998654
No 151
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=3.2e-16 Score=142.54 Aligned_cols=131 Identities=13% Similarity=0.172 Sum_probs=73.8
Q ss_pred EEeCCHHHHHHHHHHhcc----CCCceEEEeecCCcchhh--hhc--cCCCCCCCCCCCCCcceeeecCCCCCCCHHHHH
Q 012289 52 VVFADPAVAEIVIQEKHN----IDGRMVEAKKAVPRDDQI--VLN--RSSGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123 (466)
Q Consensus 52 VeF~~~e~A~~Al~~~~~----i~Gr~I~V~~a~~~~~~~--~~~--~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk 123 (466)
.+|.+.++|+.++..+.. -+++.+...++....... ... ...............++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 789999999999887654 224444443322111000 000 000011122233456799999999999999999
Q ss_pred HHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCCC
Q 012289 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLGG 182 (466)
Q Consensus 124 ~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g~ 182 (466)
++|++||+|+.|.|+.++.++++++||||+|.++++|++||+.|++. +.++.|+|.+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 99999999999999999999999999999999999999999987775 778888776653
No 152
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=4e-16 Score=127.12 Aligned_cols=71 Identities=11% Similarity=0.144 Sum_probs=66.7
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
+..|||+||++++||++|+++|.+||+|++++|+. +||||||+|.++++|++|++.+|. +.+|+|.|+.|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 57899999999999999999999999999999865 689999999999999999999887 899999999985
No 153
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=129.27 Aligned_cols=84 Identities=20% Similarity=0.327 Sum_probs=75.5
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCC------C-CCC
Q 012289 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVP------K-ELS 172 (466)
Q Consensus 100 ~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~------~-~~~ 172 (466)
+...+.++|||+|||+++++++|+++|++||+|+.|+|++|+.++++++||||+|+++++|++||++++ . .+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344567899999999999999999999999999999999999999999999999999999999999986 4 577
Q ss_pred CCCcccCCCCC
Q 012289 173 PGPTRSPLGGY 183 (466)
Q Consensus 173 ~~~~r~~~g~~ 183 (466)
++++++.+...
T Consensus 90 g~~l~v~~a~~ 100 (111)
T 1x4h_A 90 GRQLKVDLAVT 100 (111)
T ss_dssp SCEEEEECCCC
T ss_pred CEEEEEEECCC
Confidence 88888877543
No 154
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3e-15 Score=125.03 Aligned_cols=80 Identities=21% Similarity=0.418 Sum_probs=72.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC-C-CCCCCccc
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQ-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK-E-LSPGPTRS 178 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~-fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~-~-~~~~~~r~ 178 (466)
..+.++|||+|||+++|+++|+++|++ ||+|+.|+|++|+ ++++++||||+|+++++|++||+.++. . +.++++++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 346789999999999999999999999 9999999999999 899999999999999999999998887 4 67888888
Q ss_pred CCCC
Q 012289 179 PLGG 182 (466)
Q Consensus 179 ~~g~ 182 (466)
.+..
T Consensus 85 ~~a~ 88 (104)
T 2dhg_A 85 SVAI 88 (104)
T ss_dssp CBCC
T ss_pred EEcc
Confidence 7754
No 155
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=6.2e-16 Score=140.59 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|+.|.|++++.++++++||||+|.++++|++||+.++. |.++.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999998876 89999999999
Q ss_pred CCcchh
Q 012289 81 VPRDDQ 86 (466)
Q Consensus 81 ~~~~~~ 86 (466)
.++...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 876543
No 156
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=126.66 Aligned_cols=81 Identities=23% Similarity=0.394 Sum_probs=73.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
.+.++|||+|||+++++++|+++|++||+|+.|+|++|+.++++++||||+|+++++|++||+.|+.. +.++++++.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999888875 67788887665
Q ss_pred CC
Q 012289 182 GY 183 (466)
Q Consensus 182 ~~ 183 (466)
..
T Consensus 86 ~~ 87 (99)
T 1whw_A 86 TI 87 (99)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 157
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=9.9e-17 Score=133.74 Aligned_cols=82 Identities=28% Similarity=0.622 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccCCCceEEEeecCC
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNIDGRMVEAKKAVP 82 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~ 82 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++++ ++++||||||+|.++++|++|+++.+.++++.|.|.++.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 346899999999999999999999999999999999998 8999999999999999999999944459999999999886
Q ss_pred cch
Q 012289 83 RDD 85 (466)
Q Consensus 83 ~~~ 85 (466)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 654
No 158
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.4e-16 Score=130.01 Aligned_cols=84 Identities=21% Similarity=0.464 Sum_probs=75.2
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC-CCCCCCccc
Q 012289 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK-ELSPGPTRS 178 (466)
Q Consensus 100 ~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~-~~~~~~~r~ 178 (466)
+...+.++|||+|||+++++++|+++|++||+|+.|.|++|+.++++++||||+|+++++|++||++|+. .+.++.+++
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999997665 577888888
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 88 ~~a~~ 92 (103)
T 2dnm_A 88 QVARY 92 (103)
T ss_dssp EECSS
T ss_pred EECCc
Confidence 77544
No 159
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6e-16 Score=128.83 Aligned_cols=81 Identities=32% Similarity=0.615 Sum_probs=73.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
..+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.|+.. +.++++++.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999887764 7788888766
Q ss_pred CC
Q 012289 181 GG 182 (466)
Q Consensus 181 g~ 182 (466)
..
T Consensus 89 a~ 90 (102)
T 1x5s_A 89 AG 90 (102)
T ss_dssp EE
T ss_pred CC
Confidence 43
No 160
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=3.7e-16 Score=127.80 Aligned_cols=78 Identities=37% Similarity=0.602 Sum_probs=65.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccCCCceEEEeecCC
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNIDGRMVEAKKAVP 82 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~ 82 (466)
...++|||+|||++++|++|+++|++||+|++|+|+++ +||||||+|+++++|+++......+.++.|.|.++.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCC
Confidence 45789999999999999999999999999999999874 7899999999999999655444457899999999987
Q ss_pred cch
Q 012289 83 RDD 85 (466)
Q Consensus 83 ~~~ 85 (466)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 161
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.2e-16 Score=141.82 Aligned_cols=118 Identities=11% Similarity=0.068 Sum_probs=67.8
Q ss_pred cEEEEEeCCHHHHHHHHHHhccCCC-ceEEEeecCCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHH
Q 012289 48 GFGFVVFADPAVAEIVIQEKHNIDG-RMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126 (466)
Q Consensus 48 GfaFVeF~~~e~A~~Al~~~~~i~G-r~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F 126 (466)
++||.+|..++.+..++.++..+.+ ...--... .......+...++|||+|||+++||+||+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g--------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F 67 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSG--------------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 67 (139)
T ss_dssp ---------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHH
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCC--------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 6788888888877777665443222 11100000 00011223456799999999999999999999
Q ss_pred hhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCCC
Q 012289 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPLG 181 (466)
Q Consensus 127 ~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~g 181 (466)
++|| |++|+|++|++ +++||||||+|+++++|++||++....+.++.|++.+.
T Consensus 68 ~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 68 SPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp CSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred HhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 9999 77999999987 99999999999999999999955555678888877553
No 162
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=1e-15 Score=128.07 Aligned_cols=77 Identities=23% Similarity=0.404 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++ +||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4578999999999999999999999999999999874 4999999999999999998765 89999999999
Q ss_pred CCcchhh
Q 012289 81 VPRDDQI 87 (466)
Q Consensus 81 ~~~~~~~ 87 (466)
.++....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8876544
No 163
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=127.87 Aligned_cols=82 Identities=32% Similarity=0.617 Sum_probs=74.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPL 180 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~ 180 (466)
.....++|||+|||+++++++|+++|++||+|+.|+|++|+.++++++||||+|+++++|++||++....+.++.+++.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999944458888888876
Q ss_pred CC
Q 012289 181 GG 182 (466)
Q Consensus 181 g~ 182 (466)
..
T Consensus 92 a~ 93 (105)
T 2dh8_A 92 CT 93 (105)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 164
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=8.3e-16 Score=127.02 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CC--CceEEEe
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--ID--GRMVEAK 78 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~--Gr~I~V~ 78 (466)
...++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|.++++|++|++.++. |+ ++.|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45689999999999999999999999999999998764 68999999999999999998875 88 8999999
Q ss_pred ecCCcc
Q 012289 79 KAVPRD 84 (466)
Q Consensus 79 ~a~~~~ 84 (466)
++.++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998764
No 165
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=6.2e-16 Score=130.09 Aligned_cols=79 Identities=15% Similarity=0.323 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCccC------cHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCc-e
Q 012289 4 DNGKLFIGGISWDT------NEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGR-M 74 (466)
Q Consensus 4 d~~~LfVgnLP~~~------teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr-~ 74 (466)
..++|||+|||+++ ++++|+++|++||+|++|+|+ +.++++||||||+|.++++|++||+.++. |.++ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 36899999999999 889999999999999999988 36789999999999999999999998876 8998 9
Q ss_pred EEEeecCCcc
Q 012289 75 VEAKKAVPRD 84 (466)
Q Consensus 75 I~V~~a~~~~ 84 (466)
|.|+++...+
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999987654
No 166
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=127.79 Aligned_cols=84 Identities=21% Similarity=0.349 Sum_probs=75.0
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCcceEEEEEecCHHHHHHHHHHC-C-CCCCCCCc
Q 012289 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYD-HNTQRPRGFGFITYDSEEAVDKVKRAV-P-KELSPGPT 176 (466)
Q Consensus 100 ~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d-~~tg~~rG~aFV~F~s~e~A~~Ai~~l-~-~~~~~~~~ 176 (466)
+.....++|||+|||+.+++++|+++|++||+|+.|+|+++ +.++++++||||+|+++++|++||+.| + ..+.++++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34456789999999999999999999999999999999999 788999999999999999999999998 4 45788888
Q ss_pred ccCCCCC
Q 012289 177 RSPLGGY 183 (466)
Q Consensus 177 r~~~g~~ 183 (466)
++.+...
T Consensus 90 ~v~~a~~ 96 (107)
T 2cph_A 90 VLEWADS 96 (107)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 8876543
No 167
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-17 Score=140.95 Aligned_cols=85 Identities=28% Similarity=0.461 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CC
Q 012289 2 QSDNGKLFIGGISWDTNEERLKEYFSTYGEVVE--------AVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--ID 71 (466)
Q Consensus 2 ~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~--------v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~ 71 (466)
+.+.++|||+|||+++++++|+++|++||+|+. |+|++++.++++++||||+|.++++|++||+.++. |+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 467899999999999999999999999999999 89999988999999999999999999999997765 89
Q ss_pred CceEEEeecCCcchh
Q 012289 72 GRMVEAKKAVPRDDQ 86 (466)
Q Consensus 72 Gr~I~V~~a~~~~~~ 86 (466)
++.|.|+++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999877644
No 168
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=7e-17 Score=134.41 Aligned_cols=81 Identities=25% Similarity=0.327 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|.. +++.++.++++||||||+|.++++|++||+ ++. |.++.|.|+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999988 777777789999999999999999999998 765 88999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87653
No 169
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.62 E-value=2.4e-15 Score=125.78 Aligned_cols=80 Identities=25% Similarity=0.456 Sum_probs=71.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCC---CCccc
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSP---GPTRS 178 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~---~~~r~ 178 (466)
...++|||+|||+++++++|+++|++||+|+.|+|++|+ ++++++||||+|+++++|++||++|+.. +.+ +++++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999998 6999999999999999999999988876 555 77887
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 92 ~~a~~ 96 (105)
T 2dnh_A 92 KFADT 96 (105)
T ss_dssp EESCS
T ss_pred EECcc
Confidence 66543
No 170
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.62 E-value=1.9e-15 Score=128.63 Aligned_cols=83 Identities=24% Similarity=0.450 Sum_probs=75.0
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
...+.++|||+|||+.+++++|+++|++||.|+.|+|++|+.++++++||||+|+++++|++||++|+.. +.++.|++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999988775 677788877
Q ss_pred CCCC
Q 012289 180 LGGY 183 (466)
Q Consensus 180 ~g~~ 183 (466)
+...
T Consensus 91 ~a~~ 94 (115)
T 2dgo_A 91 WATR 94 (115)
T ss_dssp ESSC
T ss_pred EccC
Confidence 6543
No 171
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=1.4e-16 Score=141.48 Aligned_cols=80 Identities=20% Similarity=0.283 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||++++|+||+++|++|| |++|+|++|++ +++||||||+|+++++|++|| +++. |.+|.|+|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4568999999999999999999999999 67999999986 999999999999999999999 5543 89999999988
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.+++.
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76653
No 172
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=4.5e-16 Score=124.44 Aligned_cols=71 Identities=15% Similarity=0.389 Sum_probs=64.4
Q ss_pred CCEEEEcCCCccC------cHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCc-eE
Q 012289 5 NGKLFIGGISWDT------NEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGR-MV 75 (466)
Q Consensus 5 ~~~LfVgnLP~~~------teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr-~I 75 (466)
+++|||+|||+++ ++++|+++|++||+|++|+|+ +.++++||||||+|.++++|++|++.++. ++++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 45789999999999999999999998876 7888 77
Q ss_pred EE
Q 012289 76 EA 77 (466)
Q Consensus 76 ~V 77 (466)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 173
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.3e-16 Score=126.27 Aligned_cols=80 Identities=20% Similarity=0.470 Sum_probs=72.3
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
.+++.++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++|++.|+.. +.++++++.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999988875 666666665
Q ss_pred C
Q 012289 180 L 180 (466)
Q Consensus 180 ~ 180 (466)
+
T Consensus 92 ~ 92 (94)
T 2e5h_A 92 I 92 (94)
T ss_dssp E
T ss_pred e
Confidence 4
No 174
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.7e-16 Score=133.02 Aligned_cols=78 Identities=10% Similarity=0.217 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCcc-CcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc--c--CCCceEEE
Q 012289 3 SDNGKLFIGGISWD-TNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH--N--IDGRMVEA 77 (466)
Q Consensus 3 ~d~~~LfVgnLP~~-~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~--~--i~Gr~I~V 77 (466)
...++|||+|||++ ++|+||+++|++||+|++|+|++ +|+||||+|.++++|++|++.++ . |.+|+|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 45789999999998 99999999999999999999975 46899999999999999999764 3 89999999
Q ss_pred eecCCcchh
Q 012289 78 KKAVPRDDQ 86 (466)
Q Consensus 78 ~~a~~~~~~ 86 (466)
.++..+...
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 999866543
No 175
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.6e-16 Score=129.60 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=68.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~ 180 (466)
+...++|||+|||+++||+||+++|++||. ++|+|++|+ ++++||||||+|+++++|++||++....+.++.|++.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 456789999999999999999999999995 499999998 79999999999999999999997655567888887754
No 176
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=125.73 Aligned_cols=81 Identities=22% Similarity=0.384 Sum_probs=72.5
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeE--------EEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-
Q 012289 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITD--------VVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE- 170 (466)
Q Consensus 100 ~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~--------v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~- 170 (466)
+.+...++|||+|||+++++++|+++|++||.|+. |+|++|+.+++++|||||+|+++++|++|++.|++.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34557889999999999999999999999999999 999999999999999999999999999999977665
Q ss_pred CCCCCcccCC
Q 012289 171 LSPGPTRSPL 180 (466)
Q Consensus 171 ~~~~~~r~~~ 180 (466)
+.++.+++.+
T Consensus 88 ~~g~~l~V~~ 97 (99)
T 2la6_A 88 FSGNPIKVSF 97 (99)
T ss_dssp SSSSBCEEEE
T ss_pred eCCcEEEEEe
Confidence 6777777644
No 177
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=128.90 Aligned_cols=77 Identities=23% Similarity=0.497 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
...++|||+|||+++++++|+++|++||+|++|+|+++ ++||||+|.++++|++|++.++. |.++.|.|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45789999999999999999999999999999999886 68999999999999999998766 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87754
No 178
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=8.5e-16 Score=127.45 Aligned_cols=77 Identities=31% Similarity=0.600 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|+++ |+||||+|.++++|++|++.++. |+++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999864 68999999999999999998876 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87653
No 179
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=6.9e-16 Score=123.91 Aligned_cols=78 Identities=29% Similarity=0.501 Sum_probs=70.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++|++.+++. +.++++++.+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999877765 6666666654
No 180
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=125.47 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=72.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCC---CCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCccc
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHN---TQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRS 178 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~---tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~ 178 (466)
.+.++|||+|||+++++++|+++|++||+|+.|+|++|+. |+++++||||+|+++++|++|++.|+.. +.++++++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999999987 6799999999999999999999998775 77777888
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 76543
No 181
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=8.6e-16 Score=125.41 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=68.6
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC-CCCCCCcccCCCC
Q 012289 106 RKIFVGGLASTVTESDFKKYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK-ELSPGPTRSPLGG 182 (466)
Q Consensus 106 ~~LfV~nLp~~vteedLk~~F~~fG--~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~-~~~~~~~r~~~g~ 182 (466)
.+|||+|||+++|+++|+++|++|| .|++|+|+.|+.++++||||||+|+++++|++||+.+++ .+.++.+++.+..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999999999999999999999999999999998877 5788888886654
No 182
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1e-15 Score=127.32 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
...++|||+|||+++++++|+++|++||+|++|+|+ ++|+||||+|.+.++|++|++.++. ++++.|.|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 347899999999999999999999999999999997 3578999999999999999998876 88999999998
Q ss_pred CCc
Q 012289 81 VPR 83 (466)
Q Consensus 81 ~~~ 83 (466)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 183
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=2.8e-15 Score=131.11 Aligned_cols=83 Identities=27% Similarity=0.474 Sum_probs=74.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
.+.+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.|+.. +.++++++.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999987764 778888887
Q ss_pred CCCC
Q 012289 180 LGGY 183 (466)
Q Consensus 180 ~g~~ 183 (466)
+...
T Consensus 122 ~a~~ 125 (129)
T 2kxn_B 122 FSIT 125 (129)
T ss_dssp CCSS
T ss_pred EecC
Confidence 7543
No 184
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.5e-16 Score=126.06 Aligned_cols=79 Identities=27% Similarity=0.447 Sum_probs=72.5
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEE-EEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDV-VVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v-~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
..++|||+|||+++++++|+++|++||+|++| +|++|+.++++++||||+|+++++|++|++.|+.. +.++++++.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56799999999999999999999999999999 99999999999999999999999999999988775 77788887665
Q ss_pred C
Q 012289 182 G 182 (466)
Q Consensus 182 ~ 182 (466)
.
T Consensus 84 ~ 84 (96)
T 1x5t_A 84 F 84 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 185
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=124.45 Aligned_cols=80 Identities=15% Similarity=0.419 Sum_probs=72.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
..+.++|||+|||+++++++|+++|++||+|++|+|+.|+ ++++++||||+|+++++|++|++.|+.. +.++++++.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 7999999999999999999999887765 7777887766
Q ss_pred CC
Q 012289 181 GG 182 (466)
Q Consensus 181 g~ 182 (466)
..
T Consensus 93 a~ 94 (100)
T 2do4_A 93 SN 94 (100)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 186
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-16 Score=134.08 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|+.+.+..+..++++++||||+|.++++|++||+.++. |.++.|.|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 3568999999999999999999999999995443333333688999999999999999999998766 89999999999
Q ss_pred CCcchh
Q 012289 81 VPRDDQ 86 (466)
Q Consensus 81 ~~~~~~ 86 (466)
.++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 877543
No 187
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.7e-16 Score=126.86 Aligned_cols=78 Identities=36% Similarity=0.618 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccCCCceEEEeecCC
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNIDGRMVEAKKAVP 82 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~ 82 (466)
.+.++|||+|||++++|++|+++|++||+|++|+|+++ +|+||||+|.++++|++|+.....+.++.|.|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 46899999999999999999999999999999999864 7899999999999999877665567999999999987
Q ss_pred cch
Q 012289 83 RDD 85 (466)
Q Consensus 83 ~~~ 85 (466)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 188
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=124.63 Aligned_cols=81 Identities=26% Similarity=0.469 Sum_probs=72.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
.+.+.++|||+|||+++|+++|+++|++||+|+.|+|+.| ++++++||||+|+++++|++||+.|+.. +.++++++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3457889999999999999999999999999999999998 7999999999999999999999987765 778888887
Q ss_pred CCCC
Q 012289 180 LGGY 183 (466)
Q Consensus 180 ~g~~ 183 (466)
+...
T Consensus 89 ~a~~ 92 (103)
T 2d9p_A 89 LAQR 92 (103)
T ss_dssp ECSS
T ss_pred Eecc
Confidence 6543
No 189
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.3e-16 Score=122.23 Aligned_cols=74 Identities=38% Similarity=0.688 Sum_probs=69.8
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccC
Q 012289 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSP 179 (466)
Q Consensus 106 ~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~ 179 (466)
++|||+|||+++++++|+++|++||+|++|.|++|+.++++++||||+|+++++|++|+++++..+.++++++.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999977888888664
No 190
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.4e-16 Score=127.93 Aligned_cols=82 Identities=28% Similarity=0.463 Sum_probs=74.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
..+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.|+.. +.++++++.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 346789999999999999999999999999999999999999999999999999999999999987765 7778888876
Q ss_pred CCC
Q 012289 181 GGY 183 (466)
Q Consensus 181 g~~ 183 (466)
...
T Consensus 89 a~~ 91 (102)
T 2cqb_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 191
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.6e-15 Score=124.42 Aligned_cols=81 Identities=30% Similarity=0.409 Sum_probs=73.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPLG 181 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~g 181 (466)
..+.++|||+|||+++++++|+++|++||+|+.|+|++|+.++++++||||+|+++++|++||+. ...+.++++++.+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 34678999999999999999999999999999999999999999999999999999999999995 44678888888775
Q ss_pred CC
Q 012289 182 GY 183 (466)
Q Consensus 182 ~~ 183 (466)
..
T Consensus 91 ~~ 92 (103)
T 2cqg_A 91 NS 92 (103)
T ss_dssp CT
T ss_pred CC
Confidence 44
No 192
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.9e-16 Score=123.81 Aligned_cols=78 Identities=22% Similarity=0.462 Sum_probs=70.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
.+.++|||+|||+++++++|+++|++||+|+.|+|++|+.++++++||||+|+++++|++|++.|+.. +.++.+++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35789999999999999999999999999999999999999999999999999999999999987765 6666666654
No 193
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=125.44 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
...++|||+|||+++++++|+++|++||+|. ++|+.+ ++++||||+|.++++|++|++.++. |.++.|.|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3478999999999999999999999999997 677653 6789999999999999999998876 89999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 194
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=2.4e-15 Score=125.57 Aligned_cols=79 Identities=18% Similarity=0.367 Sum_probs=70.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC-CCCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK-ELSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~-~~~~~~~r~~~ 180 (466)
..+.++|||+|||+++++++|+++|++|+ |+.|+|++|+.++++++||||+|+++++|++|| .|+. .+.++++++.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44678999999999999999999999996 999999999999999999999999999999999 5555 57888888866
Q ss_pred CC
Q 012289 181 GG 182 (466)
Q Consensus 181 g~ 182 (466)
..
T Consensus 90 a~ 91 (103)
T 2dng_A 90 AE 91 (103)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 195
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=123.11 Aligned_cols=75 Identities=28% Similarity=0.437 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|+++ ||||+|.++++|++|++.++. |+++.|.|+++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 56799999999999999999999999999999999753 999999999999999998765 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87654
No 196
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=122.94 Aligned_cols=78 Identities=23% Similarity=0.454 Sum_probs=70.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++|++.++.. +.++.+++.+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 5679999999999999999999999999999999999999999999999999999999999987764 67777776543
No 197
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=131.86 Aligned_cols=83 Identities=17% Similarity=0.305 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCccCcHHHHH----HHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEE
Q 012289 3 SDNGKLFIGGISWDTNEERLK----EYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVE 76 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~----~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~ 76 (466)
...++|||+|||+++++++|+ ++|++||+|++|.|++ ++++||||||+|.++++|++|++.++. |.++.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 346899999999999999876 6999999999988864 578999999999999999999998876 8899999
Q ss_pred EeecCCcchhhh
Q 012289 77 AKKAVPRDDQIV 88 (466)
Q Consensus 77 V~~a~~~~~~~~ 88 (466)
|+++.++.+...
T Consensus 104 V~~a~~~~~~~~ 115 (127)
T 2a3j_A 104 ITFSETPQSQVA 115 (127)
T ss_dssp EEECCCCCHHHH
T ss_pred EEEccCcchhcc
Confidence 999998766543
No 198
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=123.91 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=71.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
+...++|||+|||+.+++++|+++|++||+|++|+|++|+. +++++||||+|+++++|++|++.|++. +.++++++.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 45678999999999999999999999999999999999987 899999999999999999999977664 7777777765
Q ss_pred C
Q 012289 181 G 181 (466)
Q Consensus 181 g 181 (466)
.
T Consensus 92 a 92 (95)
T 2ywk_A 92 P 92 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 199
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1.1e-15 Score=130.64 Aligned_cols=77 Identities=10% Similarity=0.154 Sum_probs=68.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEee
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYG-EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKK 79 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~ 79 (466)
...++|||+|||++++|++|+++|++|| +|..++|+.+ +++|||||+|.++++|++||+.++. |+++.|.|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4467999999999999999999999999 8999988642 4789999999999999999998876 9999999999
Q ss_pred cCCc
Q 012289 80 AVPR 83 (466)
Q Consensus 80 a~~~ 83 (466)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 200
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=127.84 Aligned_cols=83 Identities=19% Similarity=0.370 Sum_probs=74.3
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCee--------EEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-C
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTIT--------DVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-L 171 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~--------~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~ 171 (466)
...+.++|||+|||+++|+++|+++|++||.|+ .|+|+.|+.++++++||||+|+++++|++||+.|+.. +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 7999999999999999999999999999999987765 7
Q ss_pred CCCCcccCCCCC
Q 012289 172 SPGPTRSPLGGY 183 (466)
Q Consensus 172 ~~~~~r~~~g~~ 183 (466)
.++.+++.+...
T Consensus 91 ~g~~l~V~~a~~ 102 (113)
T 2cpe_A 91 QGSKLKVSLARK 102 (113)
T ss_dssp TTEECEEECSSC
T ss_pred CCCEEEEEECCC
Confidence 788888877543
No 201
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=126.68 Aligned_cols=77 Identities=16% Similarity=0.303 Sum_probs=69.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPL 180 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~ 180 (466)
...++|||+|||+++|+++|+++|++||+|+.|.|++|+. +++||||||+|+++++|++||++....+.++.+++.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4578999999999999999999999999999999999998 9999999999999999999999555568888887643
No 202
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.8e-15 Score=129.41 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=72.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
...+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++|++.|++. +.++.+++.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999998775 666666664
Q ss_pred C
Q 012289 180 L 180 (466)
Q Consensus 180 ~ 180 (466)
+
T Consensus 116 ~ 116 (118)
T 2khc_A 116 L 116 (118)
T ss_dssp E
T ss_pred e
Confidence 4
No 203
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=1.9e-15 Score=120.71 Aligned_cols=77 Identities=26% Similarity=0.514 Sum_probs=70.2
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 105 ~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
+.+|||+|||+++++++|+++|++||+|++|.|++|+.++++++||||+|+++++|++|++.+++. +.++++++.+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 358999999999999999999999999999999999999999999999999999999999987754 77777777654
No 204
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=1.7e-15 Score=139.74 Aligned_cols=81 Identities=23% Similarity=0.439 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
..++|||+|||+++++++|+++|++||+|++|.|+.++ ++++++||||+|.++++|++||+.++. |+++.|.|+++.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 46899999999999999999999999999999999998 899999999999999999999998876 899999999998
Q ss_pred Ccch
Q 012289 82 PRDD 85 (466)
Q Consensus 82 ~~~~ 85 (466)
+...
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 6543
No 205
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.7e-15 Score=125.74 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=72.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
...++|||+|||+.+++++|+++|++||+|+.|.|++|+.++++++||||+|+++++|++|+++|++. +.++.+++.+.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999987665 77777777654
No 206
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.60 E-value=5.4e-15 Score=126.75 Aligned_cols=80 Identities=25% Similarity=0.507 Sum_probs=72.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
.+.++|||+|||+++++++|+++|++||.|+.|.|+.|+ ++++++||||+|+++++|++|++.|++. +.++.+++.+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 8999999999999999999999988775 77788888765
Q ss_pred CC
Q 012289 182 GY 183 (466)
Q Consensus 182 ~~ 183 (466)
..
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 207
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.60 E-value=1.1e-15 Score=125.82 Aligned_cols=82 Identities=20% Similarity=0.413 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCccCcHHHHH----HHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEE
Q 012289 3 SDNGKLFIGGISWDTNEERLK----EYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVE 76 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~----~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~ 76 (466)
.+.++|||+|||+++++++|+ ++|++||+|.+|+|++ ++++++||||+|.++++|++|++.++. +.++.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 567999999999999999999 9999999999999874 467899999999999999999998876 8999999
Q ss_pred EeecCCcchhh
Q 012289 77 AKKAVPRDDQI 87 (466)
Q Consensus 77 V~~a~~~~~~~ 87 (466)
|+++.++....
T Consensus 83 v~~a~~~~~~~ 93 (97)
T 1nu4_A 83 IQYAKTDSDII 93 (97)
T ss_dssp EEECSSCCTHH
T ss_pred EEEccCCCccc
Confidence 99999876543
No 208
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-15 Score=126.27 Aligned_cols=80 Identities=13% Similarity=0.228 Sum_probs=71.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeE-EEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITD-VVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~-v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~ 179 (466)
.....++|||+|||+++|+++|+++|++||.|++ |+|+.| .+++++|||||+|+++++|++||++....+.++.|++.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3456789999999999999999999999999998 888888 77999999999999999999999996666888888775
Q ss_pred CC
Q 012289 180 LG 181 (466)
Q Consensus 180 ~g 181 (466)
+.
T Consensus 90 ~~ 91 (104)
T 1wg5_A 90 KS 91 (104)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 209
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=125.35 Aligned_cols=82 Identities=28% Similarity=0.526 Sum_probs=73.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
.....++|||+|||+.+++++|+++|++||+|+.|+|++++.++++++||||+|+++++|++|++.+++. +.++++++.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999977664 778888876
Q ss_pred CCC
Q 012289 180 LGG 182 (466)
Q Consensus 180 ~g~ 182 (466)
+..
T Consensus 102 ~a~ 104 (108)
T 2jrs_A 102 HVT 104 (108)
T ss_dssp CSC
T ss_pred Ecc
Confidence 643
No 210
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-15 Score=125.77 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=72.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
....++|||+|||+++++++|+++|++||.|+.++++.++.++++++||||+|+++++|++||+.+++. +.++++++.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999998864 7788887766
Q ss_pred C
Q 012289 181 G 181 (466)
Q Consensus 181 g 181 (466)
.
T Consensus 92 a 92 (98)
T 2cqp_A 92 G 92 (98)
T ss_dssp S
T ss_pred c
Confidence 4
No 211
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=126.24 Aligned_cols=79 Identities=20% Similarity=0.405 Sum_probs=70.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC-CCcceEEEEEecCHHHHHHHHHHCCC-CCCCCCcccCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNT-QRPRGFGFITYDSEEAVDKVKRAVPK-ELSPGPTRSPL 180 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~t-g~~rG~aFV~F~s~e~A~~Ai~~l~~-~~~~~~~r~~~ 180 (466)
.+.++|||+|||+++++++|+++|++|| |+.|+|++|+.+ +++++||||+|+++++|++|| .++. .+.++.+++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4678999999999999999999999999 999999999998 999999999999999999999 6555 57788888766
Q ss_pred CCC
Q 012289 181 GGY 183 (466)
Q Consensus 181 g~~ 183 (466)
...
T Consensus 91 a~~ 93 (104)
T 1wi8_A 91 ADQ 93 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 212
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=120.65 Aligned_cols=73 Identities=22% Similarity=0.463 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-cc--CCCceEEEee
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK-HN--IDGRMVEAKK 79 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~-~~--i~Gr~I~V~~ 79 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|+++ |+||||+|.++++|++|++.+ +. +++++|.|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 56789999999999999999999999999999999873 689999999999999999977 44 8999999988
Q ss_pred cC
Q 012289 80 AV 81 (466)
Q Consensus 80 a~ 81 (466)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 213
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.59 E-value=1.2e-15 Score=119.72 Aligned_cols=74 Identities=43% Similarity=0.766 Sum_probs=67.5
Q ss_pred eeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCC
Q 012289 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPL 180 (466)
Q Consensus 107 ~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~ 180 (466)
+|||+|||+++++++|+++|++||+|++|.|++++.++++++||||+|+++++|++|+++....+.++++++.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999555567788776643
No 214
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=9.2e-16 Score=127.96 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=70.5
Q ss_pred CcceeeecCCCC------CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCC-CC
Q 012289 104 RTRKIFVGGLAS------TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSP-GP 175 (466)
Q Consensus 104 ~~~~LfV~nLp~------~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~-~~ 175 (466)
..++|||+|||+ ++++++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++||+.|++. +.+ ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 9999999999999999999999999999999999999999999999999988775 555 77
Q ss_pred cccCC
Q 012289 176 TRSPL 180 (466)
Q Consensus 176 ~r~~~ 180 (466)
+++.+
T Consensus 85 l~V~~ 89 (100)
T 3ns6_A 85 LFLYT 89 (100)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 77654
No 215
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=127.40 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=67.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCC---CCCCCCCccc
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVP---KELSPGPTRS 178 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~---~~~~~~~~r~ 178 (466)
+.+.++|||+|||+++||++|+++|++||+|++|+|+++ ||||||+|+++++|++|++.++ ..+.++++++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999999875 7899999999999999999765 3588999999
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 88654
No 216
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=122.62 Aligned_cols=77 Identities=22% Similarity=0.472 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
+..++|||+|||++++|++|+++|++||+|++| +.++.+++ ||||+|.++++|++||+ ++. |+++.|.|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 467899999999999999999999999999987 66666665 99999999999999999 765 89999999988
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76654
No 217
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=3.3e-15 Score=126.59 Aligned_cols=75 Identities=28% Similarity=0.469 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|+ ++||||+|.++++|++|++.++. ++++.|.|+++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 567999999999999999999999999999999997 68999999999999999998876 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87654
No 218
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=130.47 Aligned_cols=81 Identities=36% Similarity=0.643 Sum_probs=73.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPLGG 182 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~g~ 182 (466)
...++|||+|||+++++++|+++|++||+|+.|+|++|+.++++++||||+|+++++|++||++....+.++.+++.+..
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 34689999999999999999999999999999999999999999999999999999999999995556888888887654
Q ss_pred C
Q 012289 183 Y 183 (466)
Q Consensus 183 ~ 183 (466)
.
T Consensus 105 ~ 105 (116)
T 1x4b_A 105 A 105 (116)
T ss_dssp S
T ss_pred C
Confidence 3
No 219
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=1.3e-15 Score=129.13 Aligned_cols=80 Identities=35% Similarity=0.620 Sum_probs=72.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPLGG 182 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~g~ 182 (466)
...++|||+|||+++++++|+++|++||+|+.|+|++|+.+++++|||||+|+++++|++||+.++..+.++.+++.+..
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999878888888776543
No 220
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=9.9e-16 Score=125.71 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=70.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
+..++|||+|||+++++++|+++|++||+|+.++++.++.++++++||||+|+++++|++||++|++. +.++++++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999977665 7777777755
No 221
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=122.00 Aligned_cols=74 Identities=23% Similarity=0.465 Sum_probs=68.3
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|+++ ||||+|.++++|++|++.++. ++++.|.|+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 56899999999999999999999999999999999753 999999999999999998876 89999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.++.
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 222
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9.4e-15 Score=124.02 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=71.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
....++|||+|||+++++++|+++|++||+|++|+|++|+. +++++||||+|+++++|++||+.|+.. +.++.+++.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34678999999999999999999999999999999999984 999999999999999999999977765 7778887766
Q ss_pred CC
Q 012289 181 GG 182 (466)
Q Consensus 181 g~ 182 (466)
..
T Consensus 91 a~ 92 (114)
T 2do0_A 91 DE 92 (114)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 223
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.3e-15 Score=121.78 Aligned_cols=75 Identities=25% Similarity=0.406 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcC--CCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEe
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTY--GEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAK 78 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~--G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~ 78 (466)
.+.++|||+|||+++++++|+++|++| |+|++|+++ |+||||+|.++++|++||+.++. |+++.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 457899999999999999999999999 999998875 46999999999999999998876 899999999
Q ss_pred ecCCcch
Q 012289 79 KAVPRDD 85 (466)
Q Consensus 79 ~a~~~~~ 85 (466)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 224
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2e-15 Score=128.53 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++|.|++ +|+||||+|.++++|++|++.++. |.++.|.|+++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999998864 568999999999999999998876 89999999998
Q ss_pred CCc
Q 012289 81 VPR 83 (466)
Q Consensus 81 ~~~ 83 (466)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 753
No 225
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=1e-15 Score=120.13 Aligned_cols=73 Identities=33% Similarity=0.614 Sum_probs=68.5
Q ss_pred eeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccC
Q 012289 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSP 179 (466)
Q Consensus 107 ~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~ 179 (466)
+|||+|||+++++++|+++|++||+|++|.|++|+.++++++||||+|+++++|++|+++.+..+.++.+++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 5899999999999999999999999999999999999999999999999999999999987777888887653
No 226
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-15 Score=124.98 Aligned_cols=77 Identities=27% Similarity=0.424 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|..+ +.+++++|||||+|.++++|++|++.++. |.++.|.|+++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 457899999999999999999999999887655 34688999999999999999999998875 89999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.++.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 8764
No 227
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.6e-15 Score=123.59 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEA-VIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v-~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
..++|||+|||+++++++|+++|++||+|++| .|++++.+++ |||+|.++++|++|++.++. |++++|.|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 47899999999999999999999999999999 5888776543 99999999999999998876 89999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.+++
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8774
No 228
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.6e-15 Score=125.28 Aligned_cols=80 Identities=26% Similarity=0.526 Sum_probs=72.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
...++|||+|||+.+++++|+++|++||.|+.|+|++++.++++++||||+|+++++|++|++.+++. +.++.+++.+.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999988875 67777777654
Q ss_pred C
Q 012289 182 G 182 (466)
Q Consensus 182 ~ 182 (466)
.
T Consensus 86 ~ 86 (104)
T 1p1t_A 86 A 86 (104)
T ss_dssp T
T ss_pred C
Confidence 3
No 229
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9e-15 Score=121.97 Aligned_cols=82 Identities=18% Similarity=0.472 Sum_probs=71.5
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCccc
Q 012289 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRS 178 (466)
Q Consensus 100 ~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~ 178 (466)
......++|||+|||+++++++|+++|++||+|++|+|++|+. .+++||||+|+++++|++|++.|+.. +.++.+++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999999875 38999999999999999999987764 77888887
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 88 ~~a~~ 92 (103)
T 2cq3_A 88 NNATA 92 (103)
T ss_dssp EECCS
T ss_pred EEccc
Confidence 66543
No 230
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.57 E-value=2.8e-15 Score=123.62 Aligned_cols=78 Identities=19% Similarity=0.403 Sum_probs=71.4
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCCC
Q 012289 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLGG 182 (466)
Q Consensus 105 ~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g~ 182 (466)
.++|||+|||+.+++++|+++|++||.|++|+|++|+.++++++||||+|+++++|++|++.+++. +.++.+++.+..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 579999999999999999999999999999999999999999999999999999999999887765 777777776643
No 231
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.57 E-value=3.6e-15 Score=120.73 Aligned_cols=78 Identities=21% Similarity=0.423 Sum_probs=70.3
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC-CCCCCCcccCCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK-ELSPGPTRSPLGG 182 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~-~~~~~~~r~~~g~ 182 (466)
..++|||+|||+++++++|+++|++||+|++|+|+.|+.++++++||||+|+++++|++|+ .++. .+.++++++.+..
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999999999999999999999999999 5555 5778888776643
No 232
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.57 E-value=2.8e-15 Score=126.61 Aligned_cols=80 Identities=15% Similarity=0.309 Sum_probs=72.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
....++|||+|||+.+++++|+++|++||+|+.|+|+.|+.++++++||||+|+++++|++|++.|++. +.++++++.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999977765 7777777765
Q ss_pred C
Q 012289 181 G 181 (466)
Q Consensus 181 g 181 (466)
.
T Consensus 103 a 103 (110)
T 1oo0_B 103 C 103 (110)
T ss_dssp S
T ss_pred c
Confidence 4
No 233
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.7e-15 Score=123.10 Aligned_cols=76 Identities=24% Similarity=0.456 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCc-cCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEee
Q 012289 3 SDNGKLFIGGISW-DTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKK 79 (466)
Q Consensus 3 ~d~~~LfVgnLP~-~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~ 79 (466)
.+.++|||+|||+ ++++++|+++|++||+|++|+|+ |+||||+|.++++|++|++.++. +.++.|.|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 5689999999998 99999999999999999999984 68999999999999999998875 8899999999
Q ss_pred cCCcchh
Q 012289 80 AVPRDDQ 86 (466)
Q Consensus 80 a~~~~~~ 86 (466)
+.++...
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9766543
No 234
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=4e-15 Score=120.90 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
...++|||+|||++++|++|+++|++| +|++|+|. ++||||||+|.++++|++|++.++. +++++|.|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999884 5789999999999999999998876 89999999998
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7543
No 235
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=1.1e-14 Score=118.74 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=69.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
...++|||+|||+++++++|+++|++||+|+.|+|+++ ++++++||||+|+++++|++|+++|+.. +.++.+++.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999984 6889999999999999999999987764 77888877665
Q ss_pred C
Q 012289 182 G 182 (466)
Q Consensus 182 ~ 182 (466)
.
T Consensus 84 ~ 84 (92)
T 2dgv_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 4
No 236
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.7e-15 Score=123.77 Aligned_cols=81 Identities=16% Similarity=0.313 Sum_probs=70.0
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCccc
Q 012289 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRS 178 (466)
Q Consensus 100 ~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~ 178 (466)
+.....++|||+|||+++|+++|+++|++||+|+.|+|+.+ .++++||||+|+++++|++||++|+.. +.++.|++
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 33456789999999999999999999999999999999665 568999999999999999999887765 77888888
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 94 ~~a~~ 98 (109)
T 1x4a_A 94 EFPRS 98 (109)
T ss_dssp ECCCC
T ss_pred EEccc
Confidence 77543
No 237
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.57 E-value=2.8e-15 Score=130.85 Aligned_cols=77 Identities=14% Similarity=0.224 Sum_probs=69.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCee--EEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTIT--DVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSP 179 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~--~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~ 179 (466)
..+.++|||+|||+++||++|+++|++| .|+ +|+|++|+. +++||||||+|+++++|++||++++..+.++.|++.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 3467789999999999999999999999 677 899999988 999999999999999999999998878888888774
Q ss_pred C
Q 012289 180 L 180 (466)
Q Consensus 180 ~ 180 (466)
.
T Consensus 117 ~ 117 (126)
T 2hgm_A 117 K 117 (126)
T ss_dssp E
T ss_pred E
Confidence 3
No 238
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.57 E-value=8.7e-15 Score=136.79 Aligned_cols=83 Identities=18% Similarity=0.486 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
...++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.++. |.++.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3468999999999999999999999999999999999998999999999999999999999998876 99999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87654
No 239
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=4.1e-15 Score=124.83 Aligned_cols=79 Identities=24% Similarity=0.406 Sum_probs=70.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
...+.++|||+|||+.+++++|+++|++||+|+.|+|++++ ++++++||||+|+++++|++||++|+.. +.+++|++.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999999 8999999999999999999999987665 666666664
Q ss_pred C
Q 012289 180 L 180 (466)
Q Consensus 180 ~ 180 (466)
+
T Consensus 104 ~ 104 (107)
T 3ulh_A 104 L 104 (107)
T ss_dssp E
T ss_pred E
Confidence 3
No 240
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=8.2e-15 Score=121.55 Aligned_cols=73 Identities=25% Similarity=0.481 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCc-cCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEee
Q 012289 3 SDNGKLFIGGISW-DTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKK 79 (466)
Q Consensus 3 ~d~~~LfVgnLP~-~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~ 79 (466)
.+.++|||+|||+ ++++++|+++|++||+|++|+|. ++||||+|.++++|++|++.++. +.++.|.|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 5689999999998 99999999999999999999983 68999999999999999998876 7899999999
Q ss_pred cCCc
Q 012289 80 AVPR 83 (466)
Q Consensus 80 a~~~ 83 (466)
+.++
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 241
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.57 E-value=1.9e-15 Score=133.61 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=70.0
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCC---eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcc
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGT---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTR 177 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~---I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r 177 (466)
.....++|||+|||+++||++|+++|++||. |++|+|++|+. +++||||||+|+++++|++||++....+.++.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEE
Confidence 3456789999999999999999999999999 89999999998 9999999999999999999999434457788887
Q ss_pred cCC
Q 012289 178 SPL 180 (466)
Q Consensus 178 ~~~ 180 (466)
+.+
T Consensus 119 V~~ 121 (136)
T 2hgl_A 119 VFK 121 (136)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 242
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.57 E-value=3.5e-15 Score=127.64 Aligned_cols=76 Identities=21% Similarity=0.419 Sum_probs=67.1
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
...+|||+|||+++|+++|+++|++||+|++|+|++|+. .+||||||+|+++++|++||++|+.. +.++++++.+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 356899999999999999999999999999999999964 57999999999999999999987765 77777877654
No 243
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=9.6e-15 Score=130.31 Aligned_cols=80 Identities=26% Similarity=0.516 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|||+++++++|+++|++||+|++++|++++.+++++|||||+|.++++|++|++.++. +.++.|.|.++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 4578999999999999999999999999999999999999999999999999999999999998876 89999999998
Q ss_pred CC
Q 012289 81 VP 82 (466)
Q Consensus 81 ~~ 82 (466)
.+
T Consensus 165 ~~ 166 (166)
T 3md3_A 165 AK 166 (166)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 244
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=3.4e-15 Score=130.49 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=72.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeE--EEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC-----CCCCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITD--VVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK-----ELSPG 174 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~--v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~-----~~~~~ 174 (466)
....++|||+|||+++||++|+++|++||.|+. |+|++|+.|+++||||||+|+++ +|++||+.|+. .+.++
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346789999999999999999999999999976 99999999999999999999999 99999999888 57788
Q ss_pred CcccCCCC
Q 012289 175 PTRSPLGG 182 (466)
Q Consensus 175 ~~r~~~g~ 182 (466)
.|++.+..
T Consensus 99 ~l~V~~a~ 106 (131)
T 2m2b_A 99 TINVEFAK 106 (131)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 88886654
No 245
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.4e-15 Score=128.01 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=68.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~ 180 (466)
....++|||+|||+++|++||+++|++| .|++|+|++|+. ++++|||||+|+++++|++||++....+.++.|++..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 3456799999999999999999999999 999999999987 9999999999999999999996555567788877644
No 246
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.8e-15 Score=121.76 Aligned_cols=81 Identities=17% Similarity=0.317 Sum_probs=70.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
.....++|||+|||+.+++++|+++|++||+|+.|+|++|+.+ .++||||+|+++++|++|++.|+.. +.++++++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456789999999999999999999999999999999998654 6899999999999999999977765 778888887
Q ss_pred CCCC
Q 012289 180 LGGY 183 (466)
Q Consensus 180 ~g~~ 183 (466)
+...
T Consensus 89 ~a~~ 92 (103)
T 2cqi_A 89 WATT 92 (103)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 6543
No 247
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-15 Score=122.75 Aligned_cols=76 Identities=24% Similarity=0.424 Sum_probs=66.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCC-eEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc---CCCceEEEe
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGE-VVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN---IDGRMVEAK 78 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~-V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~---i~Gr~I~V~ 78 (466)
.+.++|||+|||++++|++|+++|++||+ |..+.|+ +++||||+|.++++|++|++.++. |+++.|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46789999999999999999999999999 5555552 478999999999999999998765 899999999
Q ss_pred ecCCcch
Q 012289 79 KAVPRDD 85 (466)
Q Consensus 79 ~a~~~~~ 85 (466)
++.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9987654
No 248
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.56 E-value=4.9e-15 Score=128.13 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=73.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
....++|||+|||+.+|+++|+++|++||.|+.|.|+.|+.++++++||||+|+++++|++||+.|+.. +.++.|++.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999877664 7778888766
Q ss_pred CC
Q 012289 181 GG 182 (466)
Q Consensus 181 g~ 182 (466)
..
T Consensus 99 a~ 100 (126)
T 3ex7_B 99 CF 100 (126)
T ss_dssp SE
T ss_pred ec
Confidence 53
No 249
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=4.7e-15 Score=125.43 Aligned_cols=73 Identities=21% Similarity=0.464 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCcc-CcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 4 DNGKLFIGGISWD-TNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 4 d~~~LfVgnLP~~-~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
..++|||+|||++ ++|++|+++|++||+|++|+| +++||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3489999999999 999999999999999999988 578999999999999999998876 89999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.++.
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8544
No 250
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.56 E-value=8.3e-15 Score=134.86 Aligned_cols=84 Identities=37% Similarity=0.743 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-ccCCCceEEEeecCC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK-HNIDGRMVEAKKAVP 82 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~-~~i~Gr~I~V~~a~~ 82 (466)
..++|||+|||+++++++|+++|++||+|+.|+|++++.+++++|||||+|.++++|++||+.. +.|+++.|.|+++.+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 4589999999999999999999999999999999999989999999999999999999999853 349999999999998
Q ss_pred cchhh
Q 012289 83 RDDQI 87 (466)
Q Consensus 83 ~~~~~ 87 (466)
+....
T Consensus 183 k~~~~ 187 (196)
T 1l3k_A 183 KQEMA 187 (196)
T ss_dssp -----
T ss_pred hhHhc
Confidence 87654
No 251
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=123.42 Aligned_cols=70 Identities=17% Similarity=0.409 Sum_probs=65.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELS 172 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~ 172 (466)
....++|||+|||+++++++|+++|++||+|+.|+|++|+ ++++++||||+|+++++|++||+.|+....
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFI 91 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3466899999999999999999999999999999999998 899999999999999999999998887643
No 252
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=3.7e-15 Score=127.56 Aligned_cols=74 Identities=20% Similarity=0.337 Sum_probs=62.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCce-----E
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRM-----V 75 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~-----I 75 (466)
...++|||+|||++++|++|+++|++||+|++|.|+++ +||||+|+++++|++||+.++. |+++. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999875 8999999999999999998875 88888 5
Q ss_pred EEeecCCc
Q 012289 76 EAKKAVPR 83 (466)
Q Consensus 76 ~V~~a~~~ 83 (466)
+|+.+.++
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 66555543
No 253
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.56 E-value=5.9e-15 Score=131.71 Aligned_cols=77 Identities=23% Similarity=0.422 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
...++|||+|||+++++++|+++|++||+|++|+|+++ +||||||+|.++++|++|++.++. |.++.|.|+++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 35689999999999999999999999999999999886 579999999999999999998876 89999999999
Q ss_pred CCcc
Q 012289 81 VPRD 84 (466)
Q Consensus 81 ~~~~ 84 (466)
.++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8763
No 254
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=6.3e-15 Score=133.21 Aligned_cols=78 Identities=15% Similarity=0.317 Sum_probs=70.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG--~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
..++|||+|||+++|+++|+++|++|| .|++|+|+.|+.++++||||||+|+++++|++||+.|+.. +.++.|++.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 567999999999999999999999999 9999999999999999999999999999999999998865 7777777754
Q ss_pred C
Q 012289 181 G 181 (466)
Q Consensus 181 g 181 (466)
.
T Consensus 134 a 134 (156)
T 3n9u_C 134 A 134 (156)
T ss_dssp C
T ss_pred c
Confidence 3
No 255
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.55 E-value=8.2e-15 Score=138.24 Aligned_cols=83 Identities=23% Similarity=0.476 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
..++|||+|||+++++++|+++|++||+|++|+|++|+ +.+||||||+|.++++|++||+++|. |.++.|.|+++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 46789999999999999999999999999999999985 45899999999999999999998876 899999999999
Q ss_pred Ccchhhh
Q 012289 82 PRDDQIV 88 (466)
Q Consensus 82 ~~~~~~~ 88 (466)
++.+...
T Consensus 180 ~~~~~~~ 186 (213)
T 4f02_A 180 SRKEREA 186 (213)
T ss_dssp CHHHHHH
T ss_pred CCcccch
Confidence 8765543
No 256
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=5.4e-15 Score=132.63 Aligned_cols=80 Identities=38% Similarity=0.769 Sum_probs=74.4
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
..++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|++ ++. +.++.|.|+++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35789999999999999999999999999999999999899999999999999999999998 543 999999999998
Q ss_pred Ccc
Q 012289 82 PRD 84 (466)
Q Consensus 82 ~~~ 84 (466)
+++
T Consensus 165 pk~ 167 (167)
T 2cjk_A 165 PRH 167 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 257
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=9.1e-15 Score=123.10 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=73.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCC-eeEEEEE-ecCCCCCcceEEEEEecCHHHHHHHHHHCC---CCCCCCCcc
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGT-ITDVVVM-YDHNTQRPRGFGFITYDSEEAVDKVKRAVP---KELSPGPTR 177 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~-I~~v~i~-~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~---~~~~~~~~r 177 (466)
.+.++|||+|||+++++++|+++|++||+ |++|.|+ .|+.++++++||||+|+++++|++|++.|+ ..+.++.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999998 899999999999999999999999999985 468888888
Q ss_pred cCCCCC
Q 012289 178 SPLGGY 183 (466)
Q Consensus 178 ~~~g~~ 183 (466)
+.+...
T Consensus 86 V~~a~~ 91 (109)
T 2dis_A 86 VDWAEP 91 (109)
T ss_dssp EEESCS
T ss_pred EEEcCC
Confidence 876543
No 258
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3e-15 Score=127.72 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCe-eEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I-~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~ 180 (466)
+.+.++|||+|||+++|+++|+++|++||.| +.|+|++|+ +++++|||||+|+++++|++||++....+.++.|++.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3467899999999999999999999999999 899999999 89999999999999999999999955568888887755
Q ss_pred C
Q 012289 181 G 181 (466)
Q Consensus 181 g 181 (466)
.
T Consensus 91 a 91 (114)
T 2cpy_A 91 V 91 (114)
T ss_dssp E
T ss_pred C
Confidence 3
No 259
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.55 E-value=1.2e-14 Score=134.01 Aligned_cols=83 Identities=24% Similarity=0.474 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
...++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.++. |+++.|.|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4569999999999999999999999999999999999998999999999999999999999998876 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 260
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=1.5e-14 Score=131.46 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=68.3
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCC--ceEEEeec
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDG--RMVEAKKA 80 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~G--r~I~V~~a 80 (466)
..+|||+||+++++|++|+++|++||+|++|+|+.+ ++++||||+|.++++|++|++.++. |.+ ++|+|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 356899999999999999999999999999998753 3679999999999999999999877 644 99999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 98753
No 261
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.8e-14 Score=117.87 Aligned_cols=75 Identities=17% Similarity=0.337 Sum_probs=67.6
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|| ++++++|+++|++||+|++|+|. ++|+||||+|.++++|++||+.++. |+++.|.|+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 89999999999999999999984 4678999999999999999998876 89999999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
.++..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 262
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=116.43 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=63.2
Q ss_pred ceeeecCCCCCC------CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCC-Ccc
Q 012289 106 RKIFVGGLASTV------TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPG-PTR 177 (466)
Q Consensus 106 ~~LfV~nLp~~v------teedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~-~~r 177 (466)
++|||+|||+.+ ++++|+++|++||+|+.|+|+ +.+++++|||||+|+++++|++|++.|++. +.++ +++
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 789999999999999999987 467899999999999999999999998876 5555 555
Q ss_pred c
Q 012289 178 S 178 (466)
Q Consensus 178 ~ 178 (466)
+
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 4
No 263
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.4e-15 Score=127.94 Aligned_cols=79 Identities=10% Similarity=0.178 Sum_probs=69.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~ 180 (466)
....++|||+|||+++|+++|+++|++||.|+.++++.+..+++++|||||+|+++++|++||++....+.++.|++.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999998888888899999999999999999999999434457788887754
No 264
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=5.4e-15 Score=119.30 Aligned_cols=78 Identities=13% Similarity=0.368 Sum_probs=69.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC-cceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR-PRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~-~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
..++|||+|||+++++++|+++|++||+|++|.|+.|+.++. +++||||+|+++++|++|++.|++. +.++.+++.+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999999988766 8999999999999999999987665 67777776553
No 265
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=121.67 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=66.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC---CCCCCCccc
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK---ELSPGPTRS 178 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~---~~~~~~~r~ 178 (466)
..+.++|||+|||+++++++|+++|++||+|++|+|+++ |+||||+|+++++|++|++.++. .+.++++++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999998864 78999999999999999997743 378899988
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 77643
No 266
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.8e-15 Score=124.67 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=66.5
Q ss_pred CCcceeeecCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC---CCCCCCccc
Q 012289 103 GRTRKIFVGGLAS-TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK---ELSPGPTRS 178 (466)
Q Consensus 103 ~~~~~LfV~nLp~-~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~---~~~~~~~r~ 178 (466)
.+.++|||+|||+ ++|++||+++|++||.|++|+|+++ |+||||+|+++++|++|++.|+. .+.+++|++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999865 57999999999999999998763 378999988
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 77543
No 267
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=118.15 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=69.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
+...++|||+|||+++++++|+++|++| .|+.|+|++| .+++++|||||+|+++++|++||+ +++. +.+++|++.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467899999999999999999999999 9999999999 779999999999999999999999 7765 7777777755
Q ss_pred C
Q 012289 181 G 181 (466)
Q Consensus 181 g 181 (466)
.
T Consensus 84 a 84 (91)
T 2dgw_A 84 E 84 (91)
T ss_dssp E
T ss_pred C
Confidence 3
No 268
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=120.32 Aligned_cols=77 Identities=8% Similarity=0.152 Sum_probs=69.5
Q ss_pred CCcceeeecCCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcc
Q 012289 103 GRTRKIFVGGLASTVTESDFK----KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTR 177 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk----~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r 177 (466)
...++|||+|||+++++++|+ ++|++||+|++|+|++|+.+ |+||||+|+++++|++||+.+++. +.+++++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999999876 889999999999999999988775 7788888
Q ss_pred cCCCC
Q 012289 178 SPLGG 182 (466)
Q Consensus 178 ~~~g~ 182 (466)
+.+..
T Consensus 84 V~~a~ 88 (96)
T 2dgx_A 84 VSLAT 88 (96)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 87653
No 269
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=6.4e-15 Score=128.04 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=67.3
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCe----eEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTI----TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSP 179 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I----~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~ 179 (466)
..++|||+|||+++|++||+++|++|++| +.|+|++|+ ++++||||||+|+++++|++||++....+.++.|++.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 46799999999999999999999999875 689999985 7999999999999999999999986656777777664
Q ss_pred C
Q 012289 180 L 180 (466)
Q Consensus 180 ~ 180 (466)
.
T Consensus 101 ~ 101 (123)
T 2dha_A 101 R 101 (123)
T ss_dssp E
T ss_pred E
Confidence 3
No 270
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1e-14 Score=125.96 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=67.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCC---CCCCCCCcccC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVP---KELSPGPTRSP 179 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~---~~~~~~~~r~~ 179 (466)
.+.++|||+|||+++||++|+++|++||.|++|+|+++ |+||||+|+++++|++|++.++ ..+.+++|++.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45789999999999999999999999999999999976 7899999999999999999886 35889999887
Q ss_pred CCCC
Q 012289 180 LGGY 183 (466)
Q Consensus 180 ~g~~ 183 (466)
+...
T Consensus 103 ~a~~ 106 (119)
T 2ad9_A 103 FSNH 106 (119)
T ss_dssp ECSS
T ss_pred EccC
Confidence 7643
No 271
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=127.32 Aligned_cols=80 Identities=29% Similarity=0.491 Sum_probs=71.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
.....++|||+|||+.+++++|+++|++||+|++|+|++|+.++++++||||+|+++++|++|++.+++. +.++++++.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999998875 666666654
Q ss_pred C
Q 012289 180 L 180 (466)
Q Consensus 180 ~ 180 (466)
+
T Consensus 139 ~ 139 (140)
T 2ku7_A 139 L 139 (140)
T ss_dssp C
T ss_pred e
Confidence 3
No 272
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=1.7e-14 Score=130.00 Aligned_cols=78 Identities=26% Similarity=0.512 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|++.++. +.++.|.|++|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 358999999999999999999999999999999999998999999999999999999999998876 899999999873
No 273
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=5.6e-15 Score=127.05 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=69.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCC---eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCccc
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGT---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRS 178 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~---I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~ 178 (466)
....++|||+|||+++|+++|+++|++||. |+.|+|++|+. +++||||||+|+++++|++||++....+.++.|++
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 346789999999999999999999999999 89999999988 99999999999999999999995445578888877
Q ss_pred CC
Q 012289 179 PL 180 (466)
Q Consensus 179 ~~ 180 (466)
.+
T Consensus 93 ~~ 94 (118)
T 2db1_A 93 FK 94 (118)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 274
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.4e-15 Score=125.74 Aligned_cols=77 Identities=21% Similarity=0.422 Sum_probs=69.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC-CCCCCCcccCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK-ELSPGPTRSPL 180 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~-~~~~~~~r~~~ 180 (466)
...++|||+|||+++++++|+++|++||.|+.|+|+.|+.++++++||||+|+++++|++|| .++. .+.++.|++.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999 5555 57777777654
No 275
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=8.9e-15 Score=127.09 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=68.0
Q ss_pred CEEEEcCC----CccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCC----HHH----HHHHHH--Hhcc--
Q 012289 6 GKLFIGGI----SWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD----PAV----AEIVIQ--EKHN-- 69 (466)
Q Consensus 6 ~~LfVgnL----P~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~----~e~----A~~Al~--~~~~-- 69 (466)
++|||+|| |+.++|++|+++|++||+|.+|.++.|++|++++|||||+|.+ +++ |.+|++ ++++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 433 788888 4444
Q ss_pred CCCceEEEeecCCc
Q 012289 70 IDGRMVEAKKAVPR 83 (466)
Q Consensus 70 i~Gr~I~V~~a~~~ 83 (466)
|+++.|.|..-..-
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999876543
No 276
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.5e-14 Score=120.76 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=65.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCC-----C
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSP-----G 174 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~-----~ 174 (466)
.....++|||+|||+++|+++|+++|++||+|+.|+|++| +||||+|+++++|++||++|+.. +.+ +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999876 79999999999999999999886 455 6
Q ss_pred CcccCCCC
Q 012289 175 PTRSPLGG 182 (466)
Q Consensus 175 ~~r~~~g~ 182 (466)
.|++.+..
T Consensus 84 ~i~V~~a~ 91 (108)
T 1x4c_A 84 YIRVKVDG 91 (108)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 77776654
No 277
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=119.35 Aligned_cols=80 Identities=25% Similarity=0.447 Sum_probs=69.6
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCccc
Q 012289 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRS 178 (466)
Q Consensus 100 ~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~ 178 (466)
....+.++|||+|||+++++++|+++|++| ..|++++|+.++++++||||+|+++++|++||+.|+.. +.++.|++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 334567899999999999999999999977 47888999999999999999999999999999977664 77888888
Q ss_pred CCCC
Q 012289 179 PLGG 182 (466)
Q Consensus 179 ~~g~ 182 (466)
.+..
T Consensus 87 ~~a~ 90 (102)
T 2fc8_A 87 DWAK 90 (102)
T ss_dssp EECC
T ss_pred EEec
Confidence 7654
No 278
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=122.93 Aligned_cols=81 Identities=22% Similarity=0.407 Sum_probs=71.7
Q ss_pred CCcceeeecCCCCCCCHHHHH---HHHhhcCCeeEEEEEecCCCC---CcceEEEEEecCHHHHHHHHHHCCCC-CCCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFK---KYFDQFGTITDVVVMYDHNTQ---RPRGFGFITYDSEEAVDKVKRAVPKE-LSPGP 175 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk---~~F~~fG~I~~v~i~~d~~tg---~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~ 175 (466)
.+.++|||+|||+++++++|+ ++|++||+|++|+|++|+.++ +++|||||+|+++++|++||+.|+.. +.+++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 457799999999999999999 999999999999999998754 56699999999999999999997765 77888
Q ss_pred cccCCCCC
Q 012289 176 TRSPLGGY 183 (466)
Q Consensus 176 ~r~~~g~~ 183 (466)
+++.++..
T Consensus 93 l~V~~a~~ 100 (111)
T 2cpi_A 93 LKASLGTT 100 (111)
T ss_dssp EEEESCCC
T ss_pred EEEEeccc
Confidence 88877654
No 279
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.53 E-value=6e-15 Score=119.90 Aligned_cols=76 Identities=30% Similarity=0.611 Sum_probs=69.4
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCCC
Q 012289 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLGG 182 (466)
Q Consensus 106 ~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g~ 182 (466)
++|||+|||+++++++|+++|++||+|++|+|++|+.++++++||||+|++++ |++|++.+++. +.++++++.+..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 58999999999999999999999999999999999999999999999999999 99999998875 677777776543
No 280
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2e-14 Score=120.53 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=66.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCC---CCCCCCCccc
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVP---KELSPGPTRS 178 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~---~~~~~~~~r~ 178 (466)
..+.++|||+|||+++++++|+++|++||.|++|.|+++ |+||||+|+++++|++|++.++ ..+.++++++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346789999999999999999999999999999999865 7899999999999999999764 3578889888
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 86 ~~a~~ 90 (101)
T 2cq1_A 86 QYSNH 90 (101)
T ss_dssp EECSC
T ss_pred EEcCc
Confidence 77543
No 281
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=9.8e-15 Score=123.12 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=69.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCC---eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCccc
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGT---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRS 178 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~---I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~ 178 (466)
....++|||+|||+++|+++|+++|++||. |+.|+|++|+. ++++|||||+|+++++|++||++....+.++.|++
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 346789999999999999999999999998 99999999998 99999999999999999999994444567788877
Q ss_pred CCC
Q 012289 179 PLG 181 (466)
Q Consensus 179 ~~g 181 (466)
.+.
T Consensus 87 ~~a 89 (107)
T 2lmi_A 87 YEI 89 (107)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
No 282
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=3e-15 Score=132.60 Aligned_cols=84 Identities=18% Similarity=0.334 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEE--E---eecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceE
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAV--I---MKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMV 75 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~--i---~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I 75 (466)
...++|||+|||+++++++|+++|++||+|..|. + ++.+.+++++|||||+|.++++|++||+.++. |.++.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3578999999999999999999999999987641 1 11123688999999999999999999998876 899999
Q ss_pred EEeecCCcchh
Q 012289 76 EAKKAVPRDDQ 86 (466)
Q Consensus 76 ~V~~a~~~~~~ 86 (466)
.|.++.+....
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999765443
No 283
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.52 E-value=1.4e-14 Score=124.84 Aligned_cols=78 Identities=19% Similarity=0.433 Sum_probs=70.5
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC-CCCCCCcccCCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK-ELSPGPTRSPLGG 182 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~-~~~~~~~r~~~g~ 182 (466)
..++|||+|||+++|+++|+++|++||+|++|+|++|+.++++++||||+|+++++|++|| .++. .+.++.+++.+..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999999999999999999999999999 5555 5778888876644
No 284
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.52 E-value=2.6e-14 Score=123.45 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=72.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
.....++|||+|||+.+++++|+++|++||+|+.|+|++|+ ++++++||||+|+++++|++|++.+++. +.++++++.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998 8999999999999999999999977765 777777776
Q ss_pred CC
Q 012289 180 LG 181 (466)
Q Consensus 180 ~g 181 (466)
+.
T Consensus 110 ~a 111 (124)
T 2kt5_A 110 LV 111 (124)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 285
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.52 E-value=2.1e-14 Score=150.27 Aligned_cols=82 Identities=23% Similarity=0.468 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
..++|||+|||++||+++|+++|++||+|+.|.|+.++.+++++|||||+|.++++|++||+.|+. |.++.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 347999999999999999999999999999999999999999999999999999999999998876 899999999998
Q ss_pred Ccch
Q 012289 82 PRDD 85 (466)
Q Consensus 82 ~~~~ 85 (466)
++..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 6543
No 286
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.52 E-value=8.8e-15 Score=121.79 Aligned_cols=78 Identities=22% Similarity=0.425 Sum_probs=67.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCcceEEEEEecCHHHHHHHHHHCCC-CCCCCCcccC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH-NTQRPRGFGFITYDSEEAVDKVKRAVPK-ELSPGPTRSP 179 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~-~tg~~rG~aFV~F~s~e~A~~Ai~~l~~-~~~~~~~r~~ 179 (466)
....++|||+|||+++++++|+++|++|| |+.|+|++|+ .+++++|||||+|+++++|++|| .+++ .+.++.+++.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34678999999999999999999999999 9999999998 68999999999999999999999 5555 5777777776
Q ss_pred CC
Q 012289 180 LG 181 (466)
Q Consensus 180 ~g 181 (466)
+.
T Consensus 94 ~a 95 (100)
T 2j76_E 94 VA 95 (100)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 287
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=122.04 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=65.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC---CCCCCcccC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE---LSPGPTRSP 179 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~---~~~~~~r~~ 179 (466)
++.++|||+|||+++|+++|+++|++||+|++|+|++ .|+||||+|+++++|++|++.++.. +.++++++.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4678999999999999999999999999999999985 3789999999999999999998764 568888876
Q ss_pred CCC
Q 012289 180 LGG 182 (466)
Q Consensus 180 ~g~ 182 (466)
+.+
T Consensus 93 ~S~ 95 (100)
T 3r27_A 93 YST 95 (100)
T ss_dssp ECS
T ss_pred ecc
Confidence 643
No 288
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.8e-14 Score=113.83 Aligned_cols=74 Identities=19% Similarity=0.453 Sum_probs=66.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC-CCCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK-ELSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~-~~~~~~~r~~~ 180 (466)
....++|||+|||+++++++|+++|++||+|++|+|+ |+||||+|+++++|++|++.++. .+.++++++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467899999999999999999999999999999997 67999999999999999998877 47888888877
Q ss_pred CCC
Q 012289 181 GGY 183 (466)
Q Consensus 181 g~~ 183 (466)
...
T Consensus 77 a~~ 79 (90)
T 2dnq_A 77 SKN 79 (90)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 289
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.5e-14 Score=123.00 Aligned_cols=81 Identities=22% Similarity=0.274 Sum_probs=68.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
.+.++|||+|||+++|+++|+++|++||.|+.|.+..+..++++++||||+|+++++|++||+.|+.. +.++++++.+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 46789999999999999999999999999965544444447899999999999999999999988775 77788888765
Q ss_pred CC
Q 012289 182 GY 183 (466)
Q Consensus 182 ~~ 183 (466)
..
T Consensus 103 ~~ 104 (115)
T 2cpx_A 103 KN 104 (115)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 290
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=5.7e-14 Score=125.88 Aligned_cols=78 Identities=26% Similarity=0.523 Sum_probs=72.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCC--ceEEEe
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDG--RMVEAK 78 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~G--r~I~V~ 78 (466)
.+.++|||+|||+++++++|+++|++||+|+.++|++++.++++++||||+|.++++|++|++.++. +.+ ++|.|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 3578999999999999999999999999999999999998899999999999999999999998877 766 899988
Q ss_pred ec
Q 012289 79 KA 80 (466)
Q Consensus 79 ~a 80 (466)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 291
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=5e-14 Score=123.40 Aligned_cols=75 Identities=15% Similarity=0.264 Sum_probs=66.7
Q ss_pred CEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhcc--CCC--ceEEEeec
Q 012289 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGF-GFVVFADPAVAEIVIQEKHN--IDG--RMVEAKKA 80 (466)
Q Consensus 6 ~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGf-aFVeF~~~e~A~~Al~~~~~--i~G--r~I~V~~a 80 (466)
-+|||+||++++||++|+++|++||+|++|+|+++ .++| |||+|.++++|++|++.+++ |.+ +.|+|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46789999999999999999999999999998764 3678 99999999999999999987 666 89999999
Q ss_pred CCcch
Q 012289 81 VPRDD 85 (466)
Q Consensus 81 ~~~~~ 85 (466)
+++..
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87653
No 292
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.8e-14 Score=118.57 Aligned_cols=79 Identities=20% Similarity=0.362 Sum_probs=67.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
.+...++|||+|||+++++++|+++|++||.| +|+.+ .++++++||||+|+++++|++||+.|+.. +.++.+++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567899999999999999999999999977 56666 66899999999999999999999988875 677888887
Q ss_pred CCCC
Q 012289 180 LGGY 183 (466)
Q Consensus 180 ~g~~ 183 (466)
+...
T Consensus 87 ~a~~ 90 (101)
T 2fc9_A 87 LQGP 90 (101)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 6543
No 293
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=2.5e-14 Score=115.24 Aligned_cols=70 Identities=20% Similarity=0.502 Sum_probs=63.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcC----C-------CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTY----G-------EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN-- 69 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~----G-------~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~-- 69 (466)
.+.++|||+|||+++++++|+++|++| | +|.+++++++ |+||||+|.++++|++|+ .++.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 467899999999999999999999999 8 9999998764 689999999999999999 8876
Q ss_pred CCCceEEEee
Q 012289 70 IDGRMVEAKK 79 (466)
Q Consensus 70 i~Gr~I~V~~ 79 (466)
++++.|.|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 8899998875
No 294
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=1.8e-15 Score=129.28 Aligned_cols=80 Identities=23% Similarity=0.393 Sum_probs=72.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeE--------EEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITD--------VVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSP 173 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~--------v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~ 173 (466)
.+.++|||+|||+++++++|+++|++||.|+. |+|+.|+.++++++||||+|+++++|++||++|+.. +.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 999999999999999999999999999999987765 777
Q ss_pred CCcccCCCC
Q 012289 174 GPTRSPLGG 182 (466)
Q Consensus 174 ~~~r~~~g~ 182 (466)
+++++.+..
T Consensus 85 ~~l~V~~a~ 93 (116)
T 2lcw_A 85 NPIKVSFAT 93 (116)
Confidence 888887654
No 295
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=6e-14 Score=116.20 Aligned_cols=77 Identities=25% Similarity=0.493 Sum_probs=67.0
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
...+.++|||+|||+.+++++|+++|++||+|++|+|+++ |+||||+|+++++|++|++.|+.. +.++++++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999854 789999999999999999887765 777888876
Q ss_pred CCCC
Q 012289 180 LGGY 183 (466)
Q Consensus 180 ~g~~ 183 (466)
+...
T Consensus 85 ~a~~ 88 (99)
T 2cpj_A 85 FACH 88 (99)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 6543
No 296
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=6.2e-14 Score=130.95 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=71.8
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-ccCCCceEEEeecCCc
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK-HNIDGRMVEAKKAVPR 83 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~-~~i~Gr~I~V~~a~~~ 83 (466)
.++|||+|||+++++++|+++|++||+|.+|+|++++. +++||||||+|.++++|++|++.+ +.++++.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 48999999999999999999999999999999999874 899999999999999999999865 3499999999988765
Q ss_pred c
Q 012289 84 D 84 (466)
Q Consensus 84 ~ 84 (466)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 4
No 297
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.6e-14 Score=112.32 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=65.0
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHC-CCC-CCCCCcc
Q 012289 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAV-PKE-LSPGPTR 177 (466)
Q Consensus 100 ~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l-~~~-~~~~~~r 177 (466)
+.+...++|||+|||+++++++|+++|++||+|+.|+|+++ |+||||+|+++++|++|++.| +.. +.+++++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34456789999999999999999999999999999999864 789999999999999999987 654 6677766
Q ss_pred cCC
Q 012289 178 SPL 180 (466)
Q Consensus 178 ~~~ 180 (466)
+.+
T Consensus 81 v~~ 83 (85)
T 2ytc_A 81 VKW 83 (85)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 298
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.49 E-value=8.3e-14 Score=124.30 Aligned_cols=77 Identities=29% Similarity=0.541 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCce--EEEee
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRM--VEAKK 79 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~--I~V~~ 79 (466)
+.++|||+|||+++++++|+++|++||+|++++|++++.++++++||||+|.++++|++|++.++. +.++. |.|++
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 468899999999999999999999999999999999998899999999999999999999998876 77865 66665
Q ss_pred c
Q 012289 80 A 80 (466)
Q Consensus 80 a 80 (466)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 299
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=1.5e-14 Score=120.22 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=69.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPLGG 182 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~g~ 182 (466)
...++|||+|||+++|+++|+++|++||.|.. +++.|+.++++++||||+|+++++|++||++....+.++.+++.+..
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 45789999999999999999999999999988 77788888999999999999999999999944445788888887654
No 300
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=8.6e-14 Score=114.82 Aligned_cols=75 Identities=23% Similarity=0.416 Sum_probs=65.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CC--CCCccc
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LS--PGPTRS 178 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~--~~~~r~ 178 (466)
..+.++|||+|||+++++++|+++|++||+|++|+|+.+ ++||||+|+++++|++|+++|+.. +. ++.+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 346789999999999999999999999999999999754 789999999999999999987765 55 677877
Q ss_pred CCCC
Q 012289 179 PLGG 182 (466)
Q Consensus 179 ~~g~ 182 (466)
.+..
T Consensus 88 ~~a~ 91 (97)
T 1why_A 88 DFAK 91 (97)
T ss_dssp EECC
T ss_pred EECC
Confidence 6654
No 301
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=9.5e-14 Score=115.92 Aligned_cols=74 Identities=26% Similarity=0.415 Sum_probs=64.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
..+.++|||+|||+++|+++|+++|++||+|+.|+|+ ++||||+|+++++|++||++|+.. +.++.+++.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3467899999999999999999999999999999987 459999999999999999987765 7778888776
Q ss_pred CCC
Q 012289 181 GGY 183 (466)
Q Consensus 181 g~~ 183 (466)
...
T Consensus 80 a~~ 82 (103)
T 2dgu_A 80 AKP 82 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 302
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.48 E-value=1.9e-14 Score=122.77 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=66.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG-~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
...++|||+|||+++++++|+++|++|| +|+.|+|+.+ +++|||||+|+++++|++||+.|++. +.+++|++.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999999999 8999988643 47899999999999999999988876 7788888766
Q ss_pred CC
Q 012289 181 GG 182 (466)
Q Consensus 181 g~ 182 (466)
..
T Consensus 102 a~ 103 (111)
T 2jvr_A 102 DD 103 (111)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 303
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.4e-14 Score=121.70 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=64.1
Q ss_pred CCCCEEEE--cCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--C-----CCc
Q 012289 3 SDNGKLFI--GGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--I-----DGR 73 (466)
Q Consensus 3 ~d~~~LfV--gnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i-----~Gr 73 (466)
...++||| +||+++++|++|+++|++||+|++|+|+. .|+||||+|.++++|++|++.++. + .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45788999 77999999999999999999999988764 368999999999999999998876 4 467
Q ss_pred eEEEeecCCc
Q 012289 74 MVEAKKAVPR 83 (466)
Q Consensus 74 ~I~V~~a~~~ 83 (466)
+|.|..+...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 7777776643
No 304
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=5.3e-14 Score=118.17 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=67.6
Q ss_pred CcceeeecCCCCCC------CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCC-C
Q 012289 104 RTRKIFVGGLASTV------TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPG-P 175 (466)
Q Consensus 104 ~~~~LfV~nLp~~v------teedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~-~ 175 (466)
..++|||+|||+.+ |+++|+++|++||+|+.|.|+ +.+++++|||||+|+++++|++||+.|++. +.++ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46799999999999 889999999999999999988 467899999999999999999999998886 5565 6
Q ss_pred cccCCC
Q 012289 176 TRSPLG 181 (466)
Q Consensus 176 ~r~~~g 181 (466)
+++.+.
T Consensus 92 l~V~~a 97 (105)
T 2nlw_A 92 FRVNLF 97 (105)
T ss_dssp EEEECS
T ss_pred EEEEEc
Confidence 777664
No 305
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.3e-14 Score=120.31 Aligned_cols=78 Identities=19% Similarity=0.518 Sum_probs=69.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
....++|||+|||+++++++|+++|++||+|+.|+|++|+. ++++||||+|+++++|++|++.+++. +.++++++.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44678999999999999999999999999999999999864 58999999999999999999987765 7777777755
Q ss_pred C
Q 012289 181 G 181 (466)
Q Consensus 181 g 181 (466)
.
T Consensus 104 a 104 (109)
T 2err_A 104 A 104 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 306
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=1.7e-13 Score=119.25 Aligned_cols=73 Identities=21% Similarity=0.184 Sum_probs=64.6
Q ss_pred EEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhcc--CCC--ceEEEeecC
Q 012289 7 KLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGF-GFVVFADPAVAEIVIQEKHN--IDG--RMVEAKKAV 81 (466)
Q Consensus 7 ~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGf-aFVeF~~~e~A~~Al~~~~~--i~G--r~I~V~~a~ 81 (466)
.|||+|||+++++++|+++|++||+|++|+|++. +|| |||+|.++++|++|++.|++ |.+ +.|.|++++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4689999999999999999999999999999652 276 99999999999999999987 666 689999998
Q ss_pred Ccch
Q 012289 82 PRDD 85 (466)
Q Consensus 82 ~~~~ 85 (466)
++..
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7753
No 307
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=1.1e-13 Score=124.66 Aligned_cols=77 Identities=32% Similarity=0.519 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CC---CceEEEe
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--ID---GRMVEAK 78 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~---Gr~I~V~ 78 (466)
+.++|||+|||+++++++|+++|++||+|++|+|+++++ ++++|||||+|.++++|++|++.++. +. +++|.|+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 568999999999999999999999999999999999964 89999999999999999999999886 43 4899998
Q ss_pred ecC
Q 012289 79 KAV 81 (466)
Q Consensus 79 ~a~ 81 (466)
+|.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 308
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=121.06 Aligned_cols=77 Identities=14% Similarity=0.282 Sum_probs=67.3
Q ss_pred CCcceeeecCCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcc
Q 012289 103 GRTRKIFVGGLASTVTESDFK----KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTR 177 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk----~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r 177 (466)
.+.++|||+|||+.+++++|+ ++|++||+|++|.|++ ++++||||||+|+++++|++|++.|++. +.+++++
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999876 6999999999988854 4788999999999999999999998876 7788888
Q ss_pred cCCCC
Q 012289 178 SPLGG 182 (466)
Q Consensus 178 ~~~g~ 182 (466)
+.+..
T Consensus 104 V~~a~ 108 (127)
T 2a3j_A 104 ITFSE 108 (127)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 87654
No 309
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.47 E-value=2.2e-14 Score=119.40 Aligned_cols=74 Identities=20% Similarity=0.539 Sum_probs=67.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCccc
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRS 178 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~ 178 (466)
...++|||+|||+++++++|+++|++||.|+.|+|+.|+ ++++++||||+|+++++|++|++ ....+.++.+++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v 80 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEE
Confidence 356899999999999999999999999999999999998 89999999999999999999999 555567777654
No 310
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.47 E-value=3.1e-14 Score=116.00 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=64.9
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
....|||+||++.+||++|+++|.+||+|++++++. +||||||+|.++++|++|++.||.. +.++.|++.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356899999999999999999999999999999965 5899999999999999999999875 78888887654
No 311
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=1.5e-13 Score=115.97 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCc-----cCcHHHHHHHhhcCCCeEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhcc--CCCc
Q 012289 2 QSDNGKLFIGGISW-----DTNEERLKEYFSTYGEVVEAVIMKDRNT-GRARGFGFVVFADPAVAEIVIQEKHN--IDGR 73 (466)
Q Consensus 2 ~~d~~~LfVgnLP~-----~~teeeL~~~F~~~G~V~~v~i~~d~~t-g~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr 73 (466)
...+++|+|.||.. +.++++|+++|++||+|++|+|++++.+ ++++||+||+|.++++|++|++.+|+ +.+|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45789999999973 3378999999999999999999998754 68999999999999999999999987 8999
Q ss_pred eEEEeecCCc
Q 012289 74 MVEAKKAVPR 83 (466)
Q Consensus 74 ~I~V~~a~~~ 83 (466)
.|.|.++.+.
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999998753
No 312
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=8.1e-14 Score=119.09 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=65.9
Q ss_pred CCCcceeeecCCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCC---CCCCCCCcc
Q 012289 102 PGRTRKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVP---KELSPGPTR 177 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~-vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~---~~~~~~~~r 177 (466)
..+.++|||+|||++ +++++|+++|++||+|++|+|++ .|+||||+|+++++|++|++.|+ ..+.+++++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346789999999998 99999999999999999999974 47899999999999999999874 347889998
Q ss_pred cCCCC
Q 012289 178 SPLGG 182 (466)
Q Consensus 178 ~~~g~ 182 (466)
+.+..
T Consensus 96 V~~a~ 100 (112)
T 1x4f_A 96 VDLSE 100 (112)
T ss_dssp EEEEC
T ss_pred EEECc
Confidence 87654
No 313
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=116.62 Aligned_cols=76 Identities=20% Similarity=0.451 Sum_probs=67.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
...++|||+|||+.+++++|+++|++||.|+.|+|+++ ++||||+|+++++|++|++.|++. +.++.+++.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35689999999999999999999999999999999876 789999999999999999887765 77888888776
Q ss_pred CCC
Q 012289 182 GYH 184 (466)
Q Consensus 182 ~~~ 184 (466)
...
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 314
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=9.1e-14 Score=115.41 Aligned_cols=73 Identities=19% Similarity=0.470 Sum_probs=65.1
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC-CCCCCCcccCCCCC
Q 012289 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK-ELSPGPTRSPLGGY 183 (466)
Q Consensus 106 ~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~-~~~~~~~r~~~g~~ 183 (466)
++|||+|||+++|+++|+++|++||+|+.|+|+++ +++||||+|+++++|++|+++|+. .+.++.+++.+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999999987 689999999999999999997665 57788888866543
No 315
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=113.00 Aligned_cols=76 Identities=20% Similarity=0.396 Sum_probs=65.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
....++|||+|||+++++++|+++|++||.|+ ++++.+ ++++||||+|+++++|++|++.|+.. +.++.+++.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 666654 56899999999999999999887765 7778887766
Q ss_pred CC
Q 012289 181 GG 182 (466)
Q Consensus 181 g~ 182 (466)
..
T Consensus 91 a~ 92 (97)
T 2e5j_A 91 AR 92 (97)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 316
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=112.72 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=64.2
Q ss_pred CCCE-EEEcCCCccCcHHH----HHHHhhcC-CCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceE
Q 012289 4 DNGK-LFIGGISWDTNEER----LKEYFSTY-GEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMV 75 (466)
Q Consensus 4 d~~~-LfVgnLP~~~teee----L~~~F~~~-G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I 75 (466)
+..+ |||+|||+++++++ |+++|++| |+|++| |+ |||||+|.+.++|++|+++|+. +.+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3444 99999999999998 55899999 599987 23 9999999999999999999877 889999
Q ss_pred EEeecCCcchhh
Q 012289 76 EAKKAVPRDDQI 87 (466)
Q Consensus 76 ~V~~a~~~~~~~ 87 (466)
+|..|+.+.+..
T Consensus 77 ~v~~A~~~sd~~ 88 (96)
T 2diu_A 77 IVSFTPKNRELC 88 (96)
T ss_dssp EEESSCCSCCCC
T ss_pred EEEecCCCccee
Confidence 999999876544
No 317
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=1.4e-13 Score=118.99 Aligned_cols=76 Identities=17% Similarity=0.326 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeec
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKA 80 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a 80 (466)
.+.++|||+|| +++|++|+++|++||+|++|+|+ ++|+||||+|.++++|++||+.++. |.++.|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 79999999999999999999986 4678999999999999999998765 89999999999
Q ss_pred CCcchh
Q 012289 81 VPRDDQ 86 (466)
Q Consensus 81 ~~~~~~ 86 (466)
.++...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 876543
No 318
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.4e-13 Score=110.68 Aligned_cols=74 Identities=22% Similarity=0.375 Sum_probs=63.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
...++|||+|||+++|+++|+++|++||+|++| +.|+.+++ ||||+|+++++|++||+ ++.. +.++.+++.+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356799999999999999999999999999987 66766665 99999999999999999 6654 77888888654
Q ss_pred C
Q 012289 182 G 182 (466)
Q Consensus 182 ~ 182 (466)
.
T Consensus 80 ~ 80 (94)
T 2e5g_A 80 E 80 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 319
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.5e-13 Score=114.12 Aligned_cols=74 Identities=26% Similarity=0.403 Sum_probs=65.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
...++|||+|||+++++++|+++|++||.|++|+|+ ++++||||+|+++++|++|++.|++. +.++.+++.+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 356899999999999999999999999999999997 45899999999999999999987765 67777777664
Q ss_pred C
Q 012289 182 G 182 (466)
Q Consensus 182 ~ 182 (466)
.
T Consensus 99 ~ 99 (101)
T 2la4_A 99 K 99 (101)
T ss_dssp C
T ss_pred c
Confidence 3
No 320
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=7.2e-14 Score=119.13 Aligned_cols=65 Identities=28% Similarity=0.570 Sum_probs=60.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC---CCcceEEEEEecCHHHHHHHHHHCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNT---QRPRGFGFITYDSEEAVDKVKRAVP 168 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~t---g~~rG~aFV~F~s~e~A~~Ai~~l~ 168 (466)
...++|||+|||+++|+++|+++|++||+|+ ++++.++.+ +++||||||+|+++++|++||++++
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 4578999999999999999999999999999 888888887 6999999999999999999999983
No 321
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.45 E-value=1.2e-13 Score=118.08 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=59.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcc
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTR 177 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r 177 (466)
...++|||+|||+++++++|+++|++||+|+.|.|+.| +||||+|+++++|++||++|+.. +.++.++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 35689999999999999999999999999999999865 89999999999999999988775 6666643
No 322
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=1.4e-13 Score=126.80 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=71.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
.....++|||+|||+.+++++|+++|++||+|+.|.|+.|+ ++++++||||+|+++++|++||+.+++. +.+++|++.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999998 8999999999999999999999988875 667777775
Q ss_pred CC
Q 012289 180 LG 181 (466)
Q Consensus 180 ~g 181 (466)
+.
T Consensus 163 ~a 164 (177)
T 2f3j_A 163 LV 164 (177)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 323
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=111.81 Aligned_cols=74 Identities=15% Similarity=0.376 Sum_probs=64.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
.....++|||+|||+++++++|+++|++||+|+.|+|++ +||||+|+++++|++|++.|+.. +.++.+++.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999999974 39999999999999999987765 777778776
Q ss_pred CCC
Q 012289 180 LGG 182 (466)
Q Consensus 180 ~g~ 182 (466)
+..
T Consensus 78 ~a~ 80 (92)
T 2dgt_A 78 LST 80 (92)
T ss_dssp ESS
T ss_pred Ecc
Confidence 653
No 324
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=111.44 Aligned_cols=73 Identities=19% Similarity=0.398 Sum_probs=64.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
+...++|||+|||+++|+++|+++|++||+|+.|+|++ +||||+|+++++|++|++.|+.. +.++.+++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999974 39999999999999999987765 7788888766
Q ss_pred CC
Q 012289 181 GG 182 (466)
Q Consensus 181 g~ 182 (466)
..
T Consensus 78 a~ 79 (90)
T 2dnp_A 78 ST 79 (90)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 325
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.44 E-value=1.9e-13 Score=131.82 Aligned_cols=78 Identities=28% Similarity=0.402 Sum_probs=67.6
Q ss_pred CCCCEEEEcCCCccC---------cHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--C-
Q 012289 3 SDNGKLFIGGISWDT---------NEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--I- 70 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~---------teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i- 70 (466)
.+.++|||+|||+++ +|++|+++|++||+|++|+|+. +||||||+|.++++|++|++.|+. |
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 467999999999998 7999999999999999999986 478999999999999999998876 6
Q ss_pred -----------CCceEEEeecCCcchh
Q 012289 71 -----------DGRMVEAKKAVPRDDQ 86 (466)
Q Consensus 71 -----------~Gr~I~V~~a~~~~~~ 86 (466)
.++.|.|+||.+....
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC-----
T ss_pred ccccccccccCCCCEEEEEEccCCCCH
Confidence 7899999999876544
No 326
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.9e-13 Score=111.24 Aligned_cols=74 Identities=19% Similarity=0.379 Sum_probs=64.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhc--CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCccc
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRS 178 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~f--G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~ 178 (466)
....++|||+|||+.+++++|+++|++| |.|++|+++ ++||||+|+++++|++||+.|+.. +.++.+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999 999998875 679999999999999999977765 77788888
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 84 ~~a~~ 88 (99)
T 2cpd_A 84 TLAKP 88 (99)
T ss_dssp ECCCC
T ss_pred EECCC
Confidence 77543
No 327
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.43 E-value=2.2e-13 Score=115.81 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=66.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
...++|||+|||+.+++++|+++|++||.|+.|.|+.+ +++++||||+|.++++|++|++.|++. +.++.+++.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45789999999999999999999999999999999976 445999999999999999999977765 77777777654
No 328
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.43 E-value=2.7e-13 Score=114.52 Aligned_cols=71 Identities=21% Similarity=0.483 Sum_probs=63.5
Q ss_pred CcceeeecCCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 104 RTRKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 104 ~~~~LfV~nLp~~-vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
..++|||+|||+. +++++|+++|++||+|+.|+| +++||||+|+++++|++|+++|+.. +.++.+++.+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 999999999999999999998 4789999999999999999887765 77888888765
Q ss_pred C
Q 012289 182 G 182 (466)
Q Consensus 182 ~ 182 (466)
.
T Consensus 98 ~ 98 (110)
T 1wf1_A 98 G 98 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 329
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.43 E-value=2.2e-13 Score=123.37 Aligned_cols=75 Identities=28% Similarity=0.435 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~ 81 (466)
..++|||+|||+++++++|+++|++||+|..+ +.++++++||||+|.++++|++|++.++. |.++.|.|+++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46899999999999999999999999988655 45789999999999999999999998876 899999999998
Q ss_pred Cc
Q 012289 82 PR 83 (466)
Q Consensus 82 ~~ 83 (466)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 330
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=111.53 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=66.8
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEE-EEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcc
Q 012289 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDV-VVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTR 177 (466)
Q Consensus 100 ~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v-~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r 177 (466)
+.....++|||+|||+++++++|+++|++||+|+.| .|+.|+.+++ |||+|+++++|++|++.|+.. +.+++++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 334567899999999999999999999999999999 5888876543 999999999999999977765 7778887
Q ss_pred cCCCC
Q 012289 178 SPLGG 182 (466)
Q Consensus 178 ~~~g~ 182 (466)
+.+..
T Consensus 86 V~~a~ 90 (96)
T 2e44_A 86 VAYIP 90 (96)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 76543
No 331
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6.5e-13 Score=111.21 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCC-------ccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccCCCceE
Q 012289 3 SDNGKLFIGGIS-------WDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNIDGRMV 75 (466)
Q Consensus 3 ~d~~~LfVgnLP-------~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~i~Gr~I 75 (466)
...++|.|.-.+ .+++|++|+++|++||+|++|+|+ +++||||||+|.++++|++||+.++.+.++.|
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l 82 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGLVDNPL 82 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBC
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeE
Confidence 346778887765 358999999999999999999998 36889999999999999999999888999999
Q ss_pred EEeecCCcch
Q 012289 76 EAKKAVPRDD 85 (466)
Q Consensus 76 ~V~~a~~~~~ 85 (466)
.|+++.++..
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999887653
No 332
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.5e-13 Score=112.43 Aligned_cols=75 Identities=17% Similarity=0.353 Sum_probs=63.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCC-eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC--CCCCCCccc
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGT-ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK--ELSPGPTRS 178 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~-I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~--~~~~~~~r~ 178 (466)
....++|||+|||+++|+++|+++|++||. |..+.+. +++||||+|+++++|++|++.|+. .+.++++++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 346789999999999999999999999999 6666553 478999999999999999998886 578888888
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+...
T Consensus 78 ~~a~~ 82 (93)
T 2cqh_A 78 DYSVS 82 (93)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 76543
No 333
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.1e-13 Score=112.41 Aligned_cols=72 Identities=21% Similarity=0.426 Sum_probs=63.6
Q ss_pred CCcceeeecCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 103 GRTRKIFVGGLAS-TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 103 ~~~~~LfV~nLp~-~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
.+.++|||+|||+ .+++++|+++|++||+|+.|+|. ++||||+|+++++|++|++.|+.. +.++++++.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4678999999998 99999999999999999999984 789999999999999999987765 6688888766
Q ss_pred CC
Q 012289 181 GG 182 (466)
Q Consensus 181 g~ 182 (466)
..
T Consensus 80 a~ 81 (96)
T 2kvi_A 80 SS 81 (96)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 334
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.42 E-value=2.3e-13 Score=115.13 Aligned_cols=74 Identities=23% Similarity=0.493 Sum_probs=65.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
.....++|||+|||+++++++|+++|++||+|+.|+|+ ++||||+|+++++|++|++.|++. +.++.+++.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999997 689999999999999999987765 777778877
Q ss_pred CCC
Q 012289 180 LGG 182 (466)
Q Consensus 180 ~g~ 182 (466)
+..
T Consensus 99 ~a~ 101 (108)
T 2jvo_A 99 YSK 101 (108)
T ss_dssp SCS
T ss_pred Eec
Confidence 654
No 335
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=1.5e-13 Score=128.43 Aligned_cols=77 Identities=16% Similarity=0.312 Sum_probs=71.0
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPLG 181 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~g 181 (466)
..++|||+|||+++|+++|+++|++||+|+.|+|++++. ++++|||||+|+++++|++|++.++..+.++++++.+.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 184 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEET
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEh
Confidence 457999999999999999999999999999999999875 89999999999999999999999988888998877543
No 336
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.40 E-value=6.8e-13 Score=120.55 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=66.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCC-C--CCccc
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELS-P--GPTRS 178 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~-~--~~~r~ 178 (466)
+....+|||+||++.+|+++|+++|++||+|++|+|+.+ ++++||||+|+++++|++|++.|++... + +.|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 445678999999999999999999999999999999753 3589999999999999999999999744 3 67788
Q ss_pred CCCCC
Q 012289 179 PLGGY 183 (466)
Q Consensus 179 ~~g~~ 183 (466)
.+.+.
T Consensus 119 ~~Ak~ 123 (164)
T 1sjr_A 119 DFSKL 123 (164)
T ss_dssp EECSS
T ss_pred EEecC
Confidence 76543
No 337
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.4e-13 Score=119.56 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=66.2
Q ss_pred ceeeecCC----CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecC----H-HH---HHHHHH--HCCCC-
Q 012289 106 RKIFVGGL----ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS----E-EA---VDKVKR--AVPKE- 170 (466)
Q Consensus 106 ~~LfV~nL----p~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s----~-e~---A~~Ai~--~l~~~- 170 (466)
++|||+|| |+.+++++|+++|++||+|..|.++.|++|++++|||||+|.+ + ++ |.+|++ .++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 3 32 777877 55554
Q ss_pred CCCCCcccCCCC
Q 012289 171 LSPGPTRSPLGG 182 (466)
Q Consensus 171 ~~~~~~r~~~g~ 182 (466)
+.++.+||.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 788888887643
No 338
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=2.1e-13 Score=111.98 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=65.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
..+.++|||+|||+.+++++|+++|++||.|+.+ ..+++++|||||+|+++++|++|++.++.. +.++++++.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999988766 345889999999999999999999988875 7777777765
Q ss_pred C
Q 012289 181 G 181 (466)
Q Consensus 181 g 181 (466)
.
T Consensus 88 a 88 (96)
T 1fjc_A 88 T 88 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 339
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.5e-12 Score=107.31 Aligned_cols=74 Identities=22% Similarity=0.411 Sum_probs=64.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
..+.++|||+|| ++|+++|+++|++||+|++|+|. ++++||||+|+++++|++||+.|+.. +.++++++.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346789999996 89999999999999999999984 46889999999999999999998875 6777778877
Q ss_pred CCC
Q 012289 181 GGY 183 (466)
Q Consensus 181 g~~ 183 (466)
...
T Consensus 84 a~~ 86 (97)
T 1x5p_A 84 ARK 86 (97)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 340
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=2.5e-13 Score=115.44 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=64.1
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLG 181 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g 181 (466)
..++|||+|||+.+++++|+++|++||.|++|.|++ .++||||+|+++++|++||+.|+.. +.++++++.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467999999999999999999999999999999864 4789999999999999999988765 77888877664
No 341
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.39 E-value=1.7e-13 Score=112.66 Aligned_cols=78 Identities=19% Similarity=0.411 Sum_probs=67.3
Q ss_pred CCCcceeeecCCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCc
Q 012289 102 PGRTRKIFVGGLASTVTESDFK----KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPT 176 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk----~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~ 176 (466)
..+.++|||+|||+++++++|+ ++|++||.|++|.|+. ++++++||||+|+++++|++|++.|++. +.++++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999 9999999999999874 3678899999999999999999987765 677777
Q ss_pred ccCCCC
Q 012289 177 RSPLGG 182 (466)
Q Consensus 177 r~~~g~ 182 (466)
++.+..
T Consensus 82 ~v~~a~ 87 (97)
T 1nu4_A 82 RIQYAK 87 (97)
T ss_dssp EEEECS
T ss_pred EEEEcc
Confidence 776543
No 342
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.38 E-value=6.8e-13 Score=109.89 Aligned_cols=72 Identities=21% Similarity=0.418 Sum_probs=63.7
Q ss_pred CCCcceeeecCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccC
Q 012289 102 PGRTRKIFVGGLAS-TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSP 179 (466)
Q Consensus 102 ~~~~~~LfV~nLp~-~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~ 179 (466)
.++.++|||+|||+ ++++++|+++|++||.|++|+|. ++||||+|+++++|++|++.+++. +.++.+++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34678999999998 99999999999999999999983 789999999999999999988776 567777776
Q ss_pred CC
Q 012289 180 LG 181 (466)
Q Consensus 180 ~g 181 (466)
+.
T Consensus 91 ~a 92 (97)
T 2xnq_A 91 VS 92 (97)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 343
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.3e-13 Score=111.68 Aligned_cols=73 Identities=19% Similarity=0.400 Sum_probs=60.1
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPLGG 182 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~g~ 182 (466)
+.++|||+|||+++++++|+++|++||+|++|+|+++ +|+||||+|+++++|++|+.. ...+.++++++.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 5689999999999999999999999999999999865 689999999999999865433 223466666666543
No 344
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=2.1e-13 Score=111.34 Aligned_cols=71 Identities=20% Similarity=0.434 Sum_probs=56.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC--CCCCCcccC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE--LSPGPTRSP 179 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~--~~~~~~r~~ 179 (466)
+.+..+|||+|||+++||++|+++|++||+|++|+|++| +||||||+|+++++|+++ +... +.++.+++.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~---~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSL---CGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHH---TTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHH---cCCCcccCCEEEEEE
Confidence 346789999999999999999999999999999999874 689999999999999843 3333 335555554
Q ss_pred C
Q 012289 180 L 180 (466)
Q Consensus 180 ~ 180 (466)
+
T Consensus 80 ~ 80 (89)
T 3d2w_A 80 N 80 (89)
T ss_dssp E
T ss_pred E
Confidence 4
No 345
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.8e-12 Score=110.12 Aligned_cols=80 Identities=24% Similarity=0.328 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCccC-----------cHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--
Q 012289 3 SDNGKLFIGGISWDT-----------NEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN-- 69 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~-----------teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~-- 69 (466)
..+++|+|.||.... .+++|+++|++||+|++|.| .++ .++|||||+|.++++|++|++.++.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 457899999994433 26899999999999999966 554 3799999999999999999998876
Q ss_pred CCCceEEEeecCCcchh
Q 012289 70 IDGRMVEAKKAVPRDDQ 86 (466)
Q Consensus 70 i~Gr~I~V~~a~~~~~~ 86 (466)
|++++|.|+++.++.+.
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 89999999999876543
No 346
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.36 E-value=5.7e-13 Score=108.05 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=63.7
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPLGG 182 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~g~ 182 (466)
..++|||+|||+++++++|+++|++| +|++|+|. ++|+||||+|+++++|++|++.++.. +.++++++.+..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46799999999999999999999999 99999884 57899999999999999999988775 777777776643
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.35 E-value=1.3e-12 Score=112.96 Aligned_cols=74 Identities=22% Similarity=0.411 Sum_probs=63.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
+.+.++|||+|| ++|+++|+++|++||+|++|.|. ++++||||+|+++++|++||+.|+.. +.++.+++.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999996 69999999999999999999986 46899999999999999999887665 7778888876
Q ss_pred CCC
Q 012289 181 GGY 183 (466)
Q Consensus 181 g~~ 183 (466)
...
T Consensus 108 a~~ 110 (121)
T 2bz2_A 108 ARK 110 (121)
T ss_dssp CCS
T ss_pred eCC
Confidence 543
No 348
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=8.6e-13 Score=112.98 Aligned_cols=63 Identities=16% Similarity=0.351 Sum_probs=56.9
Q ss_pred CCcceeee--cCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCC
Q 012289 103 GRTRKIFV--GGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKEL 171 (466)
Q Consensus 103 ~~~~~LfV--~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~ 171 (466)
.++++||| +||++++++++|+++|++||+|++|+|+.+ |+||||+|+++++|++|++.|+...
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 35788999 679999999999999999999999988642 7899999999999999999999874
No 349
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.34 E-value=2.4e-12 Score=125.75 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CC-CceEEEeec
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--ID-GRMVEAKKA 80 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~-Gr~I~V~~a 80 (466)
..++|||+|||+++++++|+++|++||+|++|+|+.++ ++||||+|.++++|++||+.++. |. ++.|.|+++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 46889999999999999999999999999999999754 58999999999999999998877 77 999999988
Q ss_pred C
Q 012289 81 V 81 (466)
Q Consensus 81 ~ 81 (466)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 6
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.34 E-value=9.8e-13 Score=105.76 Aligned_cols=69 Identities=20% Similarity=0.451 Sum_probs=60.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhc----C-------CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQF----G-------TITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE- 170 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~f----G-------~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~- 170 (466)
.+.++|||+|||+++++++|+++|++| | +|++|+++++ |+||||+|+++++|++|+ .+++.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 8999998754 789999999999999999 66665
Q ss_pred CCCCCccc
Q 012289 171 LSPGPTRS 178 (466)
Q Consensus 171 ~~~~~~r~ 178 (466)
+.++++++
T Consensus 77 ~~g~~l~V 84 (87)
T 2hzc_A 77 FQGQSLKI 84 (87)
T ss_dssp ETTEECEE
T ss_pred ECCeEEEE
Confidence 66776655
No 351
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.33 E-value=2.6e-12 Score=124.80 Aligned_cols=82 Identities=30% Similarity=0.398 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc------CCCceEE
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN------IDGRMVE 76 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~------i~Gr~I~ 76 (466)
.+.++|||+|||+++++++|+++|++||+|++|+|+++ .+++++|||||+|.++++|++||+.++. ..+++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 35689999999999999999999999999999999999 4799999999999999999999998843 3399999
Q ss_pred EeecCCcch
Q 012289 77 AKKAVPRDD 85 (466)
Q Consensus 77 V~~a~~~~~ 85 (466)
|+++.+..+
T Consensus 173 v~~~~~~~~ 181 (261)
T 3sde_A 173 VEPMEQFDD 181 (261)
T ss_dssp EEECCCEES
T ss_pred EeeccccCc
Confidence 999886543
No 352
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=3.4e-12 Score=110.94 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=63.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceE-EEEEecCHHHHHHHHHHCCCCCC-C--CCcc
Q 012289 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGF-GFITYDSEEAVDKVKRAVPKELS-P--GPTR 177 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~-aFV~F~s~e~A~~Ai~~l~~~~~-~--~~~r 177 (466)
+.....|||+||++.+|+++|+++|++||+|++|+|+. + +|| |||+|+++++|++|+++|++... + +.++
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 34556788999999999999999999999999999964 2 376 99999999999999999998744 4 3677
Q ss_pred cCCCC
Q 012289 178 SPLGG 182 (466)
Q Consensus 178 ~~~g~ 182 (466)
+.+.+
T Consensus 96 V~~Ak 100 (124)
T 2e5i_A 96 IEYAR 100 (124)
T ss_dssp EECCS
T ss_pred EEEec
Confidence 76654
No 353
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.32 E-value=1.9e-12 Score=113.38 Aligned_cols=75 Identities=17% Similarity=0.308 Sum_probs=64.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceE-EEEEecCHHHHHHHHHHCCCC-CCC--CCccc
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGF-GFITYDSEEAVDKVKRAVPKE-LSP--GPTRS 178 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~-aFV~F~s~e~A~~Ai~~l~~~-~~~--~~~r~ 178 (466)
.+..+|||+||++.+|+++|+++|++||+|++|+|+.+ .++| |||+|+++++|++||++|++. +.+ +.+|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 45678899999999999999999999999999998764 3688 999999999999999999997 444 55677
Q ss_pred CCCC
Q 012289 179 PLGG 182 (466)
Q Consensus 179 ~~g~ 182 (466)
.+.+
T Consensus 101 ~~ak 104 (130)
T 3zzy_A 101 DFSK 104 (130)
T ss_dssp EECS
T ss_pred EecC
Confidence 6554
No 354
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=3.7e-12 Score=104.81 Aligned_cols=71 Identities=8% Similarity=0.223 Sum_probs=60.2
Q ss_pred Ccce-eeecCCCCCCCHHH----HHHHHhhc-CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCc
Q 012289 104 RTRK-IFVGGLASTVTESD----FKKYFDQF-GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPT 176 (466)
Q Consensus 104 ~~~~-LfV~nLp~~vteed----Lk~~F~~f-G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~ 176 (466)
+..+ |||.|||+++++++ |+++|++| |+|.+| |+ |+|||+|++.++|++|++.|+.. +.+++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3444 99999999999988 55899999 599988 23 99999999999999999987775 889999
Q ss_pred ccCCCCCC
Q 012289 177 RSPLGGYH 184 (466)
Q Consensus 177 r~~~g~~~ 184 (466)
++.+.+..
T Consensus 77 ~v~~A~~~ 84 (96)
T 2diu_A 77 IVSFTPKN 84 (96)
T ss_dssp EEESSCCS
T ss_pred EEEecCCC
Confidence 99876543
No 355
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.31 E-value=5.1e-13 Score=118.09 Aligned_cols=81 Identities=22% Similarity=0.285 Sum_probs=66.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEE--E---EecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCc
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVV--V---MYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPT 176 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~--i---~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~ 176 (466)
.+.++|||+|||+++|+++|+++|++||.|+.|. + ++...++++++||||+|.++++|++||+.|++. +.++++
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4568999999999999999999999999987741 1 111235889999999999999999999987765 777888
Q ss_pred ccCCCCC
Q 012289 177 RSPLGGY 183 (466)
Q Consensus 177 r~~~g~~ 183 (466)
++.+...
T Consensus 123 ~V~~a~~ 129 (143)
T 3egn_A 123 VVQFARS 129 (143)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 8876543
No 356
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.31 E-value=2.1e-12 Score=121.62 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCe--EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCc----eE
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEV--VEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGR----MV 75 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V--~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr----~I 75 (466)
..++|||+|||++++|++|+++|++||.| ++|+|+.++ +..++||||+|.++++|++||+.++. |.++ ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 35689999999999999999999999999 899998875 45679999999999999999999876 5444 45
Q ss_pred EEeec
Q 012289 76 EAKKA 80 (466)
Q Consensus 76 ~V~~a 80 (466)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 55554
No 357
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.31 E-value=3.4e-12 Score=107.66 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=70.5
Q ss_pred CCCCEEEEcCC--CccC--------cHHHHHHHhhcCCCeEEEEEeecCCC--CCcccEEEEEeCCHHHHHHHHHHhcc-
Q 012289 3 SDNGKLFIGGI--SWDT--------NEERLKEYFSTYGEVVEAVIMKDRNT--GRARGFGFVVFADPAVAEIVIQEKHN- 69 (466)
Q Consensus 3 ~d~~~LfVgnL--P~~~--------teeeL~~~F~~~G~V~~v~i~~d~~t--g~srGfaFVeF~~~e~A~~Al~~~~~- 69 (466)
..++.|.|.|+ |.++ .++||++.|++||+|++|+|++++.+ .+++||+||+|+++++|++|++.||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 4454 34799999999999999999998765 46899999999999999999999987
Q ss_pred -CCCceEEEeecCCcc
Q 012289 70 -IDGRMVEAKKAVPRD 84 (466)
Q Consensus 70 -i~Gr~I~V~~a~~~~ 84 (466)
+.+|.|.|..+.+..
T Consensus 83 ~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDS 98 (105)
T ss_dssp EETTEECEEEEECHHH
T ss_pred EeCCCEEEEEEeCHHH
Confidence 899999999876543
No 358
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.30 E-value=4.3e-12 Score=107.05 Aligned_cols=78 Identities=10% Similarity=0.152 Sum_probs=66.1
Q ss_pred CCcceeeecCCCC-----CCCHHHHHHHHhhcCCeeEEEEEecCCC-CCcceEEEEEecCHHHHHHHHHHCCCC-CCCCC
Q 012289 103 GRTRKIFVGGLAS-----TVTESDFKKYFDQFGTITDVVVMYDHNT-QRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGP 175 (466)
Q Consensus 103 ~~~~~LfV~nLp~-----~vteedLk~~F~~fG~I~~v~i~~d~~t-g~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~ 175 (466)
.++++|+|.||.. +.++++|+++|++||+|++|+|++|+.+ ++++||+||+|+++++|++|++.|++. +.+++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3577999999963 2378999999999999999999998764 689999999999999999999998887 66777
Q ss_pred cccCC
Q 012289 176 TRSPL 180 (466)
Q Consensus 176 ~r~~~ 180 (466)
+++.+
T Consensus 86 i~v~~ 90 (105)
T 2pe8_A 86 VKACF 90 (105)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 76654
No 359
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.30 E-value=3.7e-12 Score=117.77 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CC-CceEEEee
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYG-EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--ID-GRMVEAKK 79 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~-Gr~I~V~~ 79 (466)
..++|||+|||+++++++|+++|++|| +|++|+|+++ .+++|||+|.++++|++|++.++. +. ++.|.|.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 378999999999999999999999999 9999999764 268999999999999999998876 77 99999999
Q ss_pred cCCc
Q 012289 80 AVPR 83 (466)
Q Consensus 80 a~~~ 83 (466)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 8764
No 360
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.29 E-value=6.2e-12 Score=108.37 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=69.5
Q ss_pred CCCEEEEcCCC--ccC---cHHHHHHHhhcCCCeEEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhcc--CCC
Q 012289 4 DNGKLFIGGIS--WDT---NEERLKEYFSTYGEVVEAVIMKDRN----TGRARGFGFVVFADPAVAEIVIQEKHN--IDG 72 (466)
Q Consensus 4 d~~~LfVgnLP--~~~---teeeL~~~F~~~G~V~~v~i~~d~~----tg~srGfaFVeF~~~e~A~~Al~~~~~--i~G 72 (466)
.++.|+|.||- .++ .++||++.|++||+|++|+|++++. +++++||+||+|.++++|++|++.+++ +.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57899999994 222 4789999999999999999999864 467899999999999999999999987 899
Q ss_pred ceEEEeecCC
Q 012289 73 RMVEAKKAVP 82 (466)
Q Consensus 73 r~I~V~~a~~ 82 (466)
|.|.|..+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998765
No 361
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.29 E-value=7.6e-12 Score=119.10 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=67.7
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CC-CceEEEeec
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTYG-EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--ID-GRMVEAKKA 80 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~-Gr~I~V~~a 80 (466)
.++|||+|||+++++++|+++|++|| +|++|+|+.+ .++||||+|.++++|++|++.++. +. ++.|.|.++
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 68999999999999999999999999 9999999663 368999999999999999998876 77 999999998
Q ss_pred CCc
Q 012289 81 VPR 83 (466)
Q Consensus 81 ~~~ 83 (466)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.26 E-value=2.5e-12 Score=108.19 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=60.7
Q ss_pred EcCCCccCcHHHHHHHh------------hcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceE
Q 012289 10 IGGISWDTNEERLKEYF------------STYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMV 75 (466)
Q Consensus 10 VgnLP~~~teeeL~~~F------------~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I 75 (466)
+.+||+++++++|+++| ++||+|++|+|++++. +++||||||+|.++++|++|++.+++ +++|+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777888777666 9999999999999875 78999999999999999999999877 899999
Q ss_pred EEeec
Q 012289 76 EAKKA 80 (466)
Q Consensus 76 ~V~~a 80 (466)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 98875
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.19 E-value=2e-11 Score=117.56 Aligned_cols=76 Identities=16% Similarity=0.342 Sum_probs=66.1
Q ss_pred CCCcceeeecCCCCCC---------CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCC
Q 012289 102 PGRTRKIFVGGLASTV---------TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELS 172 (466)
Q Consensus 102 ~~~~~~LfV~nLp~~v---------teedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~ 172 (466)
....++|||+||+..+ +|++|+++|++||+|++|+|+.+ |+||||+|+++++|++|+++|+....
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467899999999998 79999999999999999999853 78999999999999999999988744
Q ss_pred -------------CCCcccCCCCC
Q 012289 173 -------------PGPTRSPLGGY 183 (466)
Q Consensus 173 -------------~~~~r~~~g~~ 183 (466)
++.|+|.++..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-
T ss_pred eccccccccccCCCCEEEEEEccC
Confidence 67778877643
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=9.1e-11 Score=99.50 Aligned_cols=77 Identities=13% Similarity=0.309 Sum_probs=63.6
Q ss_pred CCCCcceeeecCCCCCCC-----------HHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC
Q 012289 101 GPGRTRKIFVGGLASTVT-----------ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK 169 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vt-----------eedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~ 169 (466)
.+.++++|+|.||....+ +++|+++|++||+|++|.| .|+ .++|||||+|+++++|++|++.|++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345688999999954432 6899999999999999966 554 3799999999999999999999987
Q ss_pred C-CCCCCcccCCC
Q 012289 170 E-LSPGPTRSPLG 181 (466)
Q Consensus 170 ~-~~~~~~r~~~g 181 (466)
. +.++++++.+.
T Consensus 87 ~~~~gr~l~v~~a 99 (112)
T 2dit_A 87 RWFGGRQITAQAW 99 (112)
T ss_dssp CEETTEECEEEEC
T ss_pred CEECCcEEEEEEe
Confidence 6 67777777654
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.15 E-value=1.2e-10 Score=117.81 Aligned_cols=61 Identities=8% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCCCEEEEcC--CCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 012289 3 SDNGKLFIGG--ISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN 69 (466)
Q Consensus 3 ~d~~~LfVgn--LP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~ 69 (466)
+.+++|||+| |+++++|++|+++|++||+|++|+|.. .|+||||+|++.++|++|++.+++
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCC
Confidence 5678999999 588999999999999999999887743 479999999999999999999876
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.14 E-value=3.2e-11 Score=101.62 Aligned_cols=76 Identities=9% Similarity=0.138 Sum_probs=63.4
Q ss_pred CcceeeecCC--CCCC--------CHHHHHHHHhhcCCeeEEEEEecCCC--CCcceEEEEEecCHHHHHHHHHHCCCC-
Q 012289 104 RTRKIFVGGL--ASTV--------TESDFKKYFDQFGTITDVVVMYDHNT--QRPRGFGFITYDSEEAVDKVKRAVPKE- 170 (466)
Q Consensus 104 ~~~~LfV~nL--p~~v--------teedLk~~F~~fG~I~~v~i~~d~~t--g~~rG~aFV~F~s~e~A~~Ai~~l~~~- 170 (466)
++++|.|.|+ |..+ .++||+++|++||+|++|+|++++.+ .+++|++||+|+++++|++|+++|++.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5778899998 3333 34799999999999999999998865 368999999999999999999999987
Q ss_pred CCCCCcccC
Q 012289 171 LSPGPTRSP 179 (466)
Q Consensus 171 ~~~~~~r~~ 179 (466)
+.+|+|++.
T Consensus 84 f~GR~i~v~ 92 (105)
T 3v4m_A 84 FANRVVVTK 92 (105)
T ss_dssp ETTEECEEE
T ss_pred eCCCEEEEE
Confidence 566666654
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.7e-10 Score=93.21 Aligned_cols=63 Identities=10% Similarity=0.213 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCCCCC
Q 012289 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPLGGY 183 (466)
Q Consensus 115 ~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~g~~ 183 (466)
..+++++|+++|++||+|++|+|+ +++||||||+|+++++|++|++.++. +.++++++.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~-~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG-LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB-CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC-CCCCeEEEEEccC
Confidence 578999999999999999999998 46799999999999999999999654 5688888877543
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.08 E-value=1.2e-10 Score=100.31 Aligned_cols=76 Identities=9% Similarity=0.181 Sum_probs=63.1
Q ss_pred CcceeeecCCCCC-----CCHHHHHHHHhhcCCeeEEEEEecCC----CCCcceEEEEEecCHHHHHHHHHHCCCC-CCC
Q 012289 104 RTRKIFVGGLAST-----VTESDFKKYFDQFGTITDVVVMYDHN----TQRPRGFGFITYDSEEAVDKVKRAVPKE-LSP 173 (466)
Q Consensus 104 ~~~~LfV~nLp~~-----vteedLk~~F~~fG~I~~v~i~~d~~----tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~ 173 (466)
++++|+|.|+-.. -.++||+++|++||+|++|+|++|+. +.+++|++||+|+++++|++|+++|++. +.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4678888888422 24789999999999999999999875 4578899999999999999999999987 556
Q ss_pred CCcccC
Q 012289 174 GPTRSP 179 (466)
Q Consensus 174 ~~~r~~ 179 (466)
|.+++.
T Consensus 99 R~i~v~ 104 (118)
T 3ue2_A 99 RKVVAE 104 (118)
T ss_dssp EECEEE
T ss_pred cEEEEE
Confidence 666654
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.06 E-value=3.3e-11 Score=101.34 Aligned_cols=69 Identities=16% Similarity=0.389 Sum_probs=57.7
Q ss_pred ecCCCCCCCHHHHHHHH------------hhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCc
Q 012289 110 VGGLASTVTESDFKKYF------------DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPT 176 (466)
Q Consensus 110 V~nLp~~vteedLk~~F------------~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~ 176 (466)
+.+|++.+++++|+++| ++||+|++|+|++++. +++||||||+|+++++|++|++.|++. +.++++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677778887777666 9999999999998876 789999999999999999999988876 666766
Q ss_pred ccC
Q 012289 177 RSP 179 (466)
Q Consensus 177 r~~ 179 (466)
++.
T Consensus 99 ~v~ 101 (104)
T 1jmt_A 99 HAE 101 (104)
T ss_dssp CEE
T ss_pred EEE
Confidence 653
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.03 E-value=6.5e-10 Score=95.09 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=65.6
Q ss_pred CCCEEEEcCCCccC----------cHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CC
Q 012289 4 DNGKLFIGGISWDT----------NEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--ID 71 (466)
Q Consensus 4 d~~~LfVgnLP~~~----------teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~ 71 (466)
.++.|.|.|+=... -++||++.|++||+|++|+|+++. .+||+||+|.++++|++|++.|++ +.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46778888874321 356889999999999999997653 589999999999999999999987 89
Q ss_pred CceEEEeecCCcchhh
Q 012289 72 GRMVEAKKAVPRDDQI 87 (466)
Q Consensus 72 Gr~I~V~~a~~~~~~~ 87 (466)
+|.|.|.++.......
T Consensus 82 GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 82 GKMITAAYVPLPTYHN 97 (114)
T ss_dssp TEECEEEEECHHHHHH
T ss_pred CEEEEEEEEcHHHHHH
Confidence 9999999987554433
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.03 E-value=2.3e-10 Score=115.71 Aligned_cols=64 Identities=13% Similarity=0.268 Sum_probs=57.3
Q ss_pred CCCcceeeecC--CCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCC
Q 012289 102 PGRTRKIFVGG--LASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKEL 171 (466)
Q Consensus 102 ~~~~~~LfV~n--Lp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~ 171 (466)
..++++|||+| |++.+||++|+++|++||+|++|+|+. .|+||||+|++.++|++||++|++..
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 35678999999 589999999999999999999987753 47999999999999999999999874
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=9.6e-10 Score=94.82 Aligned_cols=74 Identities=20% Similarity=0.153 Sum_probs=64.7
Q ss_pred CCCEEEEcCCCcc-CcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCC-HHHHHHHHHHhcc----CCCceEEE
Q 012289 4 DNGKLFIGGISWD-TNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD-PAVAEIVIQEKHN----IDGRMVEA 77 (466)
Q Consensus 4 d~~~LfVgnLP~~-~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~-~e~A~~Al~~~~~----i~Gr~I~V 77 (466)
..+.|+|+||+++ +++++|+++|++||+|..|.+++++. .|||+|.+ +++|++|++++++ |++..+.+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 4688999999999 99999999999999999999999876 59999999 8999999998753 77888877
Q ss_pred eecCCc
Q 012289 78 KKAVPR 83 (466)
Q Consensus 78 ~~a~~~ 83 (466)
+...-.
T Consensus 91 evL~Ge 96 (121)
T 1owx_A 91 EVLEGE 96 (121)
T ss_dssp EECCHH
T ss_pred EECCCH
Confidence 765533
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.85 E-value=3.3e-09 Score=90.63 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=59.1
Q ss_pred CCcceeeecCCCCCC----------CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-C
Q 012289 103 GRTRKIFVGGLASTV----------TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-L 171 (466)
Q Consensus 103 ~~~~~LfV~nLp~~v----------teedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~ 171 (466)
.++++|.|.|+=... .++||+++|++||+|++|+|+++. ++|++||+|+++++|++|++.|++. +
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 457788888873322 246899999999999999997653 5899999999999999999999887 5
Q ss_pred CCCCcccCC
Q 012289 172 SPGPTRSPL 180 (466)
Q Consensus 172 ~~~~~r~~~ 180 (466)
.++.+++.+
T Consensus 81 ~GR~i~v~~ 89 (114)
T 3s6e_A 81 AGKMITAAY 89 (114)
T ss_dssp TTEECEEEE
T ss_pred CCEEEEEEE
Confidence 666666543
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=7.9e-09 Score=89.09 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=57.4
Q ss_pred CCCCCCcceeeecCCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecC-HHHHHHHHHHCC
Q 012289 99 SPGPGRTRKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVKRAVP 168 (466)
Q Consensus 99 ~~~~~~~~~LfV~nLp~~-vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s-~e~A~~Ai~~l~ 168 (466)
+...++.+.|+|+||++. +++++|+++|++||+|..|+++++.. .|||+|.+ +++|.+|+++++
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTT
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhh
Confidence 444567889999999999 99999999999999999999998865 59999999 899999999884
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=4.9e-08 Score=79.50 Aligned_cols=72 Identities=21% Similarity=0.340 Sum_probs=60.1
Q ss_pred CCCCEEEEcCCCc----cCcH----HHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCC
Q 012289 3 SDNGKLFIGGISW----DTNE----ERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDG 72 (466)
Q Consensus 3 ~d~~~LfVgnLP~----~~te----eeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~G 72 (466)
..+.+|+|.-+|. ++-. .+|++.|++||+|..++|+.++ +||+|.+.++|.+||+ |+. +.+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567888887762 3333 6799999999999999999874 8999999999999998 776 889
Q ss_pred ceEEEeecCCc
Q 012289 73 RMVEAKKAVPR 83 (466)
Q Consensus 73 r~I~V~~a~~~ 83 (466)
|.|+|+.+.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998753
No 376
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=4.8e-07 Score=75.01 Aligned_cols=87 Identities=24% Similarity=0.402 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcC-----CCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH-hccCCCceEEE
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTY-----GEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE-KHNIDGRMVEA 77 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~-----G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~-~~~i~Gr~I~V 77 (466)
-.++|.|.|||.++++|.|+-+|++- |+|+.++... .-|+|+|.+++.|+++|++ .|.+++.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 46789999999999999999999872 6788877644 3689999999999999997 78999999999
Q ss_pred eecCCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCC
Q 012289 78 KKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVT 118 (466)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vt 118 (466)
....++. ..+|++.+|++.++
T Consensus 79 ~P~~~~~--------------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPRA--------------------PARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCCC--------------------CCCCCCCSCCCCCC
T ss_pred EcCCCCC--------------------cceEeeecCCCCCC
Confidence 8866553 45788899988775
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.52 E-value=1.9e-07 Score=88.12 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=59.2
Q ss_pred CcHHHHHHHhhcCCCeEEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEeecCCc
Q 012289 17 TNEERLKEYFSTYGEVVEAVIMKDRN----TGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAKKAVPR 83 (466)
Q Consensus 17 ~teeeL~~~F~~~G~V~~v~i~~d~~----tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~~a~~~ 83 (466)
-.+++|++.|++||+|++++|+++.. +++++|++||+|.+.++|++|++.+++ +.+|.|.+......
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 46789999999999999999986543 458999999999999999999999987 89999999987643
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=1.6e-07 Score=76.88 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=59.2
Q ss_pred CCCCEEEEcCCCcc-----CcH----HHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CC
Q 012289 3 SDNGKLFIGGISWD-----TNE----ERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--ID 71 (466)
Q Consensus 3 ~d~~~LfVgnLP~~-----~te----eeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~ 71 (466)
..+.+|+|.-++.+ +-. .+|.+.|++||+|+.++|+.|+ +||+|.+.++|.+||+ ++. +.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45778999988743 322 5689999999999999999974 9999999999999998 766 88
Q ss_pred CceEEEeecCC
Q 012289 72 GRMVEAKKAVP 82 (466)
Q Consensus 72 Gr~I~V~~a~~ 82 (466)
+|.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999987653
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.33 E-value=6.6e-07 Score=84.29 Aligned_cols=64 Identities=11% Similarity=0.186 Sum_probs=54.4
Q ss_pred CCHHHHHHHHhhcCCeeEEEEEecCC----CCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcccCC
Q 012289 117 VTESDFKKYFDQFGTITDVVVMYDHN----TQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRSPL 180 (466)
Q Consensus 117 vteedLk~~F~~fG~I~~v~i~~d~~----tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~~~ 180 (466)
-.+++|++.|++||+|++|.|+++.. +++++|++||+|+++++|++|++.|++. +.+|+|++.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 45789999999999999999986544 4589999999999999999999999987 5667766543
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=6.4e-07 Score=72.93 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=48.5
Q ss_pred HHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccCCCCC
Q 012289 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSPLGGY 183 (466)
Q Consensus 120 edLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~~g~~ 183 (466)
.+|++.|.+||+|+.++|+.|+ +||+|++.++|.+||++...++.++.+++.+...
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCC
Confidence 5799999999999999999874 8999999999999999666678888888876543
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=8.7e-07 Score=72.54 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=55.2
Q ss_pred CcceeeecCCCCC------CCH---HHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCC
Q 012289 104 RTRKIFVGGLAST------VTE---SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPG 174 (466)
Q Consensus 104 ~~~~LfV~nLp~~------vte---edLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~ 174 (466)
+.-+|+|.-++.. ..+ .+|.+.|.+||+|+.++|+.|+ +||+|++.++|.+||++...++.++
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4457888777643 121 5689999999999999999874 9999999999999999666678888
Q ss_pred CcccCC
Q 012289 175 PTRSPL 180 (466)
Q Consensus 175 ~~r~~~ 180 (466)
.+++.+
T Consensus 86 ~L~V~~ 91 (95)
T 1ufw_A 86 AVKISG 91 (95)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 887754
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=8.2e-06 Score=68.30 Aligned_cols=73 Identities=10% Similarity=0.180 Sum_probs=64.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcC-----CCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceE
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTY-----GEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMV 75 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~-----G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I 75 (466)
++.++|-|-+||..++++.|+.+++++ ++|+.|.+..|.. =|+|+|+|...|-||...+++ |++|+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 458899999999999999999999999 9999999988864 699999999999999987765 889999
Q ss_pred EEeecC
Q 012289 76 EAKKAV 81 (466)
Q Consensus 76 ~V~~a~ 81 (466)
.+....
T Consensus 93 r~gTv~ 98 (117)
T 2l9w_A 93 RSGTIN 98 (117)
T ss_dssp EEECHH
T ss_pred EecCHH
Confidence 886543
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=4.2e-05 Score=64.03 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=59.7
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhc-----CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCcc
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQF-----GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTR 177 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~f-----G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r 177 (466)
..++|-+-+||++++++.|+.+.+++ +.|++|.++.|.. =|+|+|+|..+|-+|.-+|++. +.++.+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35688888999999999999999999 9999999999875 6999999999999988777775 5666666
Q ss_pred c
Q 012289 178 S 178 (466)
Q Consensus 178 ~ 178 (466)
+
T Consensus 94 ~ 94 (117)
T 2l9w_A 94 S 94 (117)
T ss_dssp E
T ss_pred e
Confidence 5
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.00054 Score=56.77 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=56.8
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhc-----CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCccc
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQF-----GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRS 178 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~f-----G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~ 178 (466)
..++|.|.|||+.+.++.|+-+|+.- |+|+.|+... .-|+|+|.+++.|+++|++-...+..-++.+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 45789999999999999999999872 6788887753 4799999999999999999888877766644
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.21 E-value=0.0014 Score=54.50 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=60.8
Q ss_pred CCEEEEcCCCccC-c----HHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEE
Q 012289 5 NGKLFIGGISWDT-N----EERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEA 77 (466)
Q Consensus 5 ~~~LfVgnLP~~~-t----eeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V 77 (466)
.++|+|.||+.++ + +++++++|..|.++.....++.- .-..|.|.++++|.+|..++|+ +.++.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999999987 2 36789999999998887777642 1468999999999999999987 88999999
Q ss_pred eecCCc
Q 012289 78 KKAVPR 83 (466)
Q Consensus 78 ~~a~~~ 83 (466)
-.+.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 988843
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.14 E-value=0.001 Score=54.56 Aligned_cols=59 Identities=22% Similarity=0.367 Sum_probs=47.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCC
Q 012289 101 GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVP 168 (466)
Q Consensus 101 ~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~ 168 (466)
.+...+.++| .+|.+...+||.++|+.||.| .|..+-|- .|||.|.+++.|..|++++.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3445667777 999999999999999999955 45444442 79999999999999999774
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.11 E-value=0.00091 Score=54.80 Aligned_cols=54 Identities=19% Similarity=0.398 Sum_probs=45.4
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK 67 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~ 67 (466)
++.++| .+|+++..+||.++|+.||.| .|+.+.|. -|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 455666 999999999999999999955 46666653 6999999999999999854
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.00 E-value=0.0016 Score=52.97 Aligned_cols=66 Identities=9% Similarity=0.162 Sum_probs=54.8
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC--cceEEEEEecCHHHHHHHHHHCCCCC
Q 012289 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR--PRGFGFITYDSEEAVDKVKRAVPKEL 171 (466)
Q Consensus 106 ~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~--~rG~aFV~F~s~e~A~~Ai~~l~~~~ 171 (466)
++|.|++||+.+||+++.+.+....++.....+..+.+.+ ...-|+|.|.+.|++....+.+++..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 4899999999999999999999988887777766554332 33679999999999999999988763
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.74 E-value=0.0014 Score=53.79 Aligned_cols=53 Identities=19% Similarity=0.389 Sum_probs=44.0
Q ss_pred CEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 012289 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK 67 (466)
Q Consensus 6 ~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~ 67 (466)
+.++| .+|+++...||.++|+.||. ..|..+.|. -|||.|.+++.|..||..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 44555 99999999999999999983 356666653 6999999999999999864
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.69 E-value=0.0048 Score=50.14 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=50.5
Q ss_pred CEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCC--cccEEEEEeCCHHHHHHHHHHhcc
Q 012289 6 GKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGR--ARGFGFVVFADPAVAEIVIQEKHN 69 (466)
Q Consensus 6 ~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~--srGfaFVeF~~~e~A~~Al~~~~~ 69 (466)
++|.|++||+.+||+++.+.+....++.....+.-+.+.. .-.-|+|.|++.+++....+..++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g 67 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDG 67 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 6899999999999999999999888776666555433221 234599999999999998887655
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.64 E-value=0.0053 Score=52.23 Aligned_cols=71 Identities=13% Similarity=0.255 Sum_probs=55.2
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc-CC-CceEEEeecC
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN-ID-GRMVEAKKAV 81 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~-i~-Gr~I~V~~a~ 81 (466)
+.+.|.|-+.|.+. .+.|.++|++||+|++...... .-+-.|+|.++.+|++||.+.-. |. ..+|-|++..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 46789999999884 6788899999999998776322 34999999999999999986444 44 3556666654
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.16 E-value=0.0059 Score=50.66 Aligned_cols=72 Identities=8% Similarity=0.087 Sum_probs=57.9
Q ss_pred cceeeecCCCCCC-C----HHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC-CCCCCccc
Q 012289 105 TRKIFVGGLASTV-T----ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE-LSPGPTRS 178 (466)
Q Consensus 105 ~~~LfV~nLp~~v-t----eedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~-~~~~~~r~ 178 (466)
..+|+|.||+.++ + +++++++|..|.++.....++.- .-..|.|.++++|.+|...|++. +.+..+|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4579999998876 2 36788999999999888887542 25789999999999999999998 66667787
Q ss_pred CCCC
Q 012289 179 PLGG 182 (466)
Q Consensus 179 ~~g~ 182 (466)
-++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 6654
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.12 E-value=0.0058 Score=50.16 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=46.1
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCC
Q 012289 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPK 169 (466)
Q Consensus 105 ~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~ 169 (466)
.+.++| .+|.+....||.++|+.||.| .|..+-|- .|||.|.+++.|..|+.++.+
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~~ 61 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSKY 61 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHTT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhccc
Confidence 456777 999999999999999999944 45555442 799999999999999998753
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.84 E-value=0.005 Score=50.48 Aligned_cols=68 Identities=4% Similarity=0.086 Sum_probs=50.5
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC--cceEEEEEecCHHHHHHHHHHCCCCC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR--PRGFGFITYDSEEAVDKVKRAVPKEL 171 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~--~rG~aFV~F~s~e~A~~Ai~~l~~~~ 171 (466)
...+|.|+.||+.+||+++.+.+...-++.....+..+.+.+ .-.-|+|.|.+.|++....+..++..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~ 77 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI 77 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE
Confidence 355899999999999999988887765554443333322221 22569999999999999999998863
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.64 E-value=0.022 Score=48.40 Aligned_cols=65 Identities=18% Similarity=0.162 Sum_probs=51.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPG 174 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~ 174 (466)
...+-|.|-+.|+.. ...|.++|++||+|++.... .......|+|+++.+|++||.+....+.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~ 86 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGES 86 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTT
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCC
Confidence 356788888999886 55777888999999988862 124699999999999999999977666543
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.28 E-value=0.0077 Score=62.87 Aligned_cols=57 Identities=14% Similarity=0.272 Sum_probs=43.3
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~ 66 (466)
..+.|||. .|.++++++|.++|++||+|.++.+-+++ + -||.|||++.+++++++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 45889997 89999999999999999999998776653 2 5999999999999987754
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.25 E-value=0.0099 Score=62.04 Aligned_cols=56 Identities=18% Similarity=0.454 Sum_probs=43.1
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHH
Q 012289 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRA 166 (466)
Q Consensus 105 ~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~ 166 (466)
.+.|+|. .|..+++.+|.++|++||+|.++.+.+++ .-||.|||.+++++++++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 4689997 79999999999999999999999887654 37999999999999987655
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.91 E-value=0.022 Score=46.68 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=45.4
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCC-C-cccEEEEEeCCHHHHHHHHHHhcc
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTG-R-ARGFGFVVFADPAVAEIVIQEKHN 69 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg-~-srGfaFVeF~~~e~A~~Al~~~~~ 69 (466)
+-+|.|+.||+.+||+++.+.+..+-++.....+.-+.+- . .-.-|+|.|+++++.....+..++
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 5689999999999999998888776554332222211111 1 123589999999999998887654
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.82 E-value=0.019 Score=49.55 Aligned_cols=83 Identities=12% Similarity=0.299 Sum_probs=55.0
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEE-Eeec--------CCCCC-----cccEEEEEeCCHHHHHHHHHH
Q 012289 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAV-IMKD--------RNTGR-----ARGFGFVVFADPAVAEIVIQE 66 (466)
Q Consensus 1 m~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~-i~~d--------~~tg~-----srGfaFVeF~~~e~A~~Al~~ 66 (466)
|+..+..|.|=+.|++. ...|.+.|++||.|++-. +.+. +...+ ...+..|+|.++.+|++||++
T Consensus 3 ~~~~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 3 LSNGELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp -----CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred cccCceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 35677889999998765 456778999999987622 1110 00011 245789999999999999985
Q ss_pred h-ccCCCceEEEeecCCcc
Q 012289 67 K-HNIDGRMVEAKKAVPRD 84 (466)
Q Consensus 67 ~-~~i~Gr~I~V~~a~~~~ 84 (466)
. ..|.+.+|-|++..+..
T Consensus 82 NG~ii~G~mIGV~Py~~~~ 100 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYTKDA 100 (132)
T ss_dssp TTCEETTEECEEEECCHHH
T ss_pred CCeEeCcEEEEEEECCHHH
Confidence 4 44888888888776443
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.75 E-value=0.24 Score=42.71 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=47.0
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCCeeEE-EEEecC--------CCCC-----cceEEEEEecCHHHHHHHHHHCCCC
Q 012289 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDV-VVMYDH--------NTQR-----PRGFGFITYDSEEAVDKVKRAVPKE 170 (466)
Q Consensus 105 ~~~LfV~nLp~~vteedLk~~F~~fG~I~~v-~i~~d~--------~tg~-----~rG~aFV~F~s~e~A~~Ai~~l~~~ 170 (466)
..-|.|-+.|+..+. .+-++|++||.|++- .+.++. ...+ ......|+|+++.+|++||.+....
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 346777788877766 555778999998762 221100 0011 2467899999999999999999887
Q ss_pred CCCC
Q 012289 171 LSPG 174 (466)
Q Consensus 171 ~~~~ 174 (466)
+.+-
T Consensus 86 i~G~ 89 (132)
T 3p3d_A 86 FNGV 89 (132)
T ss_dssp ETTE
T ss_pred eCcE
Confidence 7654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.24 E-value=1 Score=47.50 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=47.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC
Q 012289 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE 170 (466)
Q Consensus 103 ~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~ 170 (466)
...+.++|. +|..+...+|+++|+.|+.| +|..+-| -.|||.|.+++.|..+++++...
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHhC
Confidence 345677776 89999999999999999954 4544332 37999999999999999988654
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=87.79 E-value=4.3 Score=32.47 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=53.7
Q ss_pred CCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccCCCceEEEe
Q 012289 3 SDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNIDGRMVEAK 78 (466)
Q Consensus 3 ~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~i~Gr~I~V~ 78 (466)
+..|-|-|-|||..+-+.|+.-.....|---.|..+. |.|.|.|.+.++.+.|++++-.-+..++.|+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqie 77 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIE 77 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 3578899999999999999999999888655555543 5799999999999999998755555555443
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.68 E-value=1.1 Score=47.21 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=44.1
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKH 68 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~ 68 (466)
++.++|+ +|..+...+|.++|+.|+.| +|+.+.+ -.|||.|.+++.|+.+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4556666 99999999999999999954 4554443 279999999999999998764
No 404
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=67.65 E-value=43 Score=27.98 Aligned_cols=89 Identities=21% Similarity=0.275 Sum_probs=54.4
Q ss_pred EEe--CCHHHHHHHHHHhcc----CCCceEEEeecCCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHH--
Q 012289 52 VVF--ADPAVAEIVIQEKHN----IDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFK-- 123 (466)
Q Consensus 52 VeF--~~~e~A~~Al~~~~~----i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk-- 123 (466)
|.| .|.+.-++||+++.. +.+. +.-...- ..-.|.|.++|..+.+|--+
T Consensus 6 i~f~gddlea~ekalkemirqarkfagt-vtytl~g----------------------n~l~i~itgvpeqvrkelakea 62 (170)
T 4hhu_A 6 IVFEGDDLEALEKALKEMIRQARKFAGT-VTYTLSG----------------------NRLVIVITGVPEQVRKELAKEA 62 (170)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHTTCE-EEEEEET----------------------TEEEEEEESCCHHHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhcce-EEEEEeC----------------------CEEEEEEeCCcHHHHHHHHHHH
Confidence 445 578888999987632 3332 2111111 12356677888776654332
Q ss_pred -HHHhhcCCeeEEEEEecCCCCCcceEEEEEe--cCHHHHHHHHHHCC
Q 012289 124 -KYFDQFGTITDVVVMYDHNTQRPRGFGFITY--DSEEAVDKVKRAVP 168 (466)
Q Consensus 124 -~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F--~s~e~A~~Ai~~l~ 168 (466)
.+-..|...+...|+ +...|.--|.| +|.|+.++|++.+-
T Consensus 63 erl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkemi 105 (170)
T 4hhu_A 63 ERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEMI 105 (170)
T ss_dssp HHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHHH
Confidence 233456665666666 45567888888 78899999887653
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=47.48 E-value=63 Score=25.72 Aligned_cols=56 Identities=7% Similarity=0.076 Sum_probs=44.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHC
Q 012289 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAV 167 (466)
Q Consensus 104 ~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l 167 (466)
+.+-|.|-|+|..+-..++.-.....|--..|+.+ .|-|.|+|.+.++...||++|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 45677788999999988887777777876667654 357999999999888888765
No 406
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=46.37 E-value=78 Score=22.65 Aligned_cols=59 Identities=12% Similarity=-0.009 Sum_probs=45.4
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC
Q 012289 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE 170 (466)
Q Consensus 105 ~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~ 170 (466)
..+|.|.++.-.-=...|++.+++ -.|..+.|-. ..+.+.|+|++.++..++|+.+.-.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~------~~~~~~v~~~~~~~i~~~i~~~Gy~ 64 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL------NEAVVAGNKEDVDKYIKAVEAAGYQ 64 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS------SEEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc------cCCEEEEEECCHHHHHHHHHHcCCc
Confidence 457888888766667889999999 8888888743 3567889998777888888876643
No 407
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=44.48 E-value=1.2e+02 Score=24.43 Aligned_cols=134 Identities=13% Similarity=0.186 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCC----HHHHHHHHHHhccCCCceEE
Q 012289 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD----PAVAEIVIQEKHNIDGRMVE 76 (466)
Q Consensus 1 m~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~----~e~A~~Al~~~~~i~Gr~I~ 76 (466)
|.-...++.|.++.=.--...|++.+++.-.|..+.+-.. ..-+.|+|.. .+...+++++. +..+.
T Consensus 1 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~----G~~~~ 70 (149)
T 2ew9_A 1 MAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALM------AGKAEIKYDPEVIQPLEIAQFIQDL----GFEAA 70 (149)
T ss_dssp CCCEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH----TCEEE
T ss_pred CCcEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEec------CCEEEEEEcCCCCCHHHHHHHHhcC----CCceE
Confidence 3333456778887655556678888888766766665332 1346677743 33444444432 11222
Q ss_pred EeecCCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEec-
Q 012289 77 AKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD- 155 (466)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~- 155 (466)
+... .. ......+|.|.++.-..-...|++.+++.-.|..+.+-.. ...+.|+|+
T Consensus 71 ~~~~--~~----------------~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~ 126 (149)
T 2ew9_A 71 VMED--YA----------------GSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDP 126 (149)
T ss_dssp ECSC--SC----------------CSSSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCT
T ss_pred eecc--cc----------------cccceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECC
Confidence 1100 00 0012346788888665556788899998888888887543 346888886
Q ss_pred ---CHHHHHHHHHHCC
Q 012289 156 ---SEEAVDKVKRAVP 168 (466)
Q Consensus 156 ---s~e~A~~Ai~~l~ 168 (466)
+.++..++++.+.
T Consensus 127 ~~~~~~~i~~~i~~~G 142 (149)
T 2ew9_A 127 EIIGPRDIIKIIEEIG 142 (149)
T ss_dssp TTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhCC
Confidence 4566777777654
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.29 E-value=50 Score=25.98 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHHhhc-CC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 012289 1 MQSDNGKLFIGGISWDTNEERLKEYFST-YG-EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEK 67 (466)
Q Consensus 1 m~~d~~~LfVgnLP~~~teeeL~~~F~~-~G-~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~ 67 (466)
|+.++..+|+ +..+.++.+|++.+++ |+ +|..|..+..+..-+ -|+|.+..-.+|.+...++
T Consensus 20 ~e~~n~~~F~--Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~K---KA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 20 IEKENKLTFI--VDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEK---KAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp HHTSCEEEEE--ECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCE---EEEEEECTTSCHHHHHHHS
T ss_pred HHhCCEEEEE--EcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCce---EEEEEcCCCCcHHHHHHhh
No 409
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=37.84 E-value=68 Score=25.22 Aligned_cols=34 Identities=9% Similarity=0.379 Sum_probs=26.6
Q ss_pred eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCC
Q 012289 132 ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKE 170 (466)
Q Consensus 132 I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~ 170 (466)
|.+|.++. ..+||.||+++..++...+++..++-
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 55555542 36899999999999999999888764
No 410
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=34.26 E-value=83 Score=24.05 Aligned_cols=61 Identities=10% Similarity=0.062 Sum_probs=38.7
Q ss_pred EEEEEeCCHHHHHHHHHHhccCCCceE---EEeecCCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHH
Q 012289 49 FGFVVFADPAVAEIVIQEKHNIDGRMV---EAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125 (466)
Q Consensus 49 faFVeF~~~e~A~~Al~~~~~i~Gr~I---~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~ 125 (466)
|.++.|....++-+-|+..-.++...| .|+...++. --.+|| |.+++++++++..
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r~--------------------YE~m~I--l~P~l~ee~~~~~ 64 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGR--------------------YEVNIV--LNPNLDQSQLQNE 64 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTTE--------------------EEEEEE--ECTTCCHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCCc--------------------eEEEEE--ECCCCCHHHHHHH
Confidence 788999776666666664444554444 344333222 235666 5778999999988
Q ss_pred HhhcCC
Q 012289 126 FDQFGT 131 (466)
Q Consensus 126 F~~fG~ 131 (466)
.++|-.
T Consensus 65 vek~~~ 70 (77)
T 3zzp_A 65 KEIIQR 70 (77)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887743
No 411
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.21 E-value=54 Score=29.24 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=35.3
Q ss_pred EEEEcCCCc-c--------CcHHHHHHHh--hcCCCeEEEEEeecCCCCCcccEEEEEeCCH
Q 012289 7 KLFIGGISW-D--------TNEERLKEYF--STYGEVVEAVIMKDRNTGRARGFGFVVFADP 57 (466)
Q Consensus 7 ~LfVgnLP~-~--------~teeeL~~~F--~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~ 57 (466)
.+.|-|+|. + ....+|++.| ..|.++. |+.+..+. -++|++.|+|..-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCC
Confidence 467889987 2 2347899977 9998865 66666653 4789999999653
No 412
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=32.89 E-value=1.2e+02 Score=27.07 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=35.7
Q ss_pred eeeecCCCCC---------CCHHHHHHHH--hhcCCeeEEEEEecCCCCCcceEEEEEecC-HHHHHHHHH
Q 012289 107 KIFVGGLAST---------VTESDFKKYF--DQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVKR 165 (466)
Q Consensus 107 ~LfV~nLp~~---------vteedLk~~F--~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s-~e~A~~Ai~ 165 (466)
.++|-|+|.. ...++|++.| ..|.+++ |+.+.++. -.++++.|+|.. -.--..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 3455566651 3447899977 8899875 66665553 467999999954 333333333
No 413
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=32.20 E-value=44 Score=30.21 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=22.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHhccCCCceEEEee
Q 012289 47 RGFGFVVFADPAVAEIVIQEKHNIDGRMVEAKK 79 (466)
Q Consensus 47 rGfaFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~ 79 (466)
+--.||.|+++++|.++++..-.| +.|.|-.
T Consensus 97 ~~~v~il~k~p~d~~~lve~Gv~i--~~vNvG~ 127 (187)
T 3lfj_A 97 EEKVFLLFKNIDTCKRVMDGGLPI--TTLNIGG 127 (187)
T ss_dssp CEEEEEEESSHHHHHHHHHTTCCC--SEEEEEE
T ss_pred CceEEEEECCHHHHHHHHHcCCCC--CEEEECC
Confidence 456899999999999998864433 4555543
No 414
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=29.27 E-value=1.2e+02 Score=23.75 Aligned_cols=53 Identities=8% Similarity=-0.013 Sum_probs=34.6
Q ss_pred eecCCCCCCCHHHHHHHHh-------hcCCeeEEEEEecCCCCCcc---eEEEEEecCHHHHHH
Q 012289 109 FVGGLASTVTESDFKKYFD-------QFGTITDVVVMYDHNTQRPR---GFGFITYDSEEAVDK 162 (466)
Q Consensus 109 fV~nLp~~vteedLk~~F~-------~fG~I~~v~i~~d~~tg~~r---G~aFV~F~s~e~A~~ 162 (466)
.+-.|.+.+++++++++.+ +...|+.+.+-++.. .+.+ -.-.++|++.++.++
T Consensus 9 Vlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 9 VMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 3346788888776655553 356788888877654 3333 334568899988876
No 415
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=29.09 E-value=1.9e+02 Score=23.66 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=36.9
Q ss_pred ceeeecCCCCCCCHHHHHHHHhh-------cCCeeEEEEEecCCC-CCcceE---EEEEecCHHHHHH
Q 012289 106 RKIFVGGLASTVTESDFKKYFDQ-------FGTITDVVVMYDHNT-QRPRGF---GFITYDSEEAVDK 162 (466)
Q Consensus 106 ~~LfV~nLp~~vteedLk~~F~~-------fG~I~~v~i~~d~~t-g~~rG~---aFV~F~s~e~A~~ 162 (466)
+.|.+-.|.+.+++++++++.+. ...|+.+.+-++... .+.++| ..++|++.++.++
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~ 89 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDA 89 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHH
Confidence 34445578999988876655543 456788877766542 233333 4468899988876
No 416
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=29.02 E-value=1.1e+02 Score=22.53 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=36.6
Q ss_pred EEEEcCCC-ccCcHHHHHHHhhcCC-----CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--CCCceEEEe
Q 012289 7 KLFIGGIS-WDTNEERLKEYFSTYG-----EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHN--IDGRMVEAK 78 (466)
Q Consensus 7 ~LfVgnLP-~~~teeeL~~~F~~~G-----~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~--i~Gr~I~V~ 78 (466)
+|||.-=- ..++..+|..++..-+ +|-.|.|..+ |.||+-... .|+++++.+.. ++++.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45553221 2457778888886543 3555666442 789988653 45667776654 788888877
Q ss_pred ecC
Q 012289 79 KAV 81 (466)
Q Consensus 79 ~a~ 81 (466)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 417
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=34.75 E-value=12 Score=30.74 Aligned_cols=57 Identities=16% Similarity=0.332 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEE--EecCHHHHHHHHHHCCCCCC
Q 012289 114 ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFI--TYDSEEAVDKVKRAVPKELS 172 (466)
Q Consensus 114 p~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV--~F~s~e~A~~Ai~~l~~~~~ 172 (466)
-....+++|+++..++. +..+.|.+....+++ -|..| .|.+.++|.+|++.|+..+.
T Consensus 31 ~a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 31 SSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 33445667777777665 334554432221222 22222 67999999999999998764
No 418
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=28.24 E-value=1.6e+02 Score=23.50 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=36.2
Q ss_pred eeeecCCCCCCCHHHHHHHHhh-------cCCeeEEEEEecCCC-CCcce---EEEEEecCHHHHHH
Q 012289 107 KIFVGGLASTVTESDFKKYFDQ-------FGTITDVVVMYDHNT-QRPRG---FGFITYDSEEAVDK 162 (466)
Q Consensus 107 ~LfV~nLp~~vteedLk~~F~~-------fG~I~~v~i~~d~~t-g~~rG---~aFV~F~s~e~A~~ 162 (466)
.|.+-.|.+.+++++++++.+. .-.|+.+.+-++... .+.++ .-.++|++.++.+.
T Consensus 13 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (112)
T 1q4r_A 13 HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAE 79 (112)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHH
Confidence 3444468888888876655543 456777877665543 22233 45568999998876
No 419
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=27.47 E-value=40 Score=27.38 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHH-hhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHCCCCCCCCCcccC
Q 012289 112 GLASTVTESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAVPKELSPGPTRSP 179 (466)
Q Consensus 112 nLp~~vteedLk~~F-~~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l~~~~~~~~~r~~ 179 (466)
-++..+.-+||+... +.||.-.++..+ +. ...|-..+.|+.++|++.++.....+.+|+-
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrss~~kSLrIl 83 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRSIHMKSLKIL 83 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccCCcccceEEE
Confidence 356777777777555 668987777665 32 3678899999999999999988777777663
No 420
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=26.34 E-value=1.8e+02 Score=22.98 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=35.8
Q ss_pred eeeecCCCCCCCHHHHHHHHh-------hcCCeeEEEEEecCCC---CCcc---eEEEEEecCHHHHHH
Q 012289 107 KIFVGGLASTVTESDFKKYFD-------QFGTITDVVVMYDHNT---QRPR---GFGFITYDSEEAVDK 162 (466)
Q Consensus 107 ~LfV~nLp~~vteedLk~~F~-------~fG~I~~v~i~~d~~t---g~~r---G~aFV~F~s~e~A~~ 162 (466)
.|.+-.|.+.+++++++++.+ +...|+.+.+-++... .+.+ -.-.++|++.++.++
T Consensus 11 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (108)
T 1tr0_A 11 HTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQE 79 (108)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHH
Confidence 344446888888887665544 3566778877666442 2233 334568899988876
No 421
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=24.70 E-value=92 Score=32.17 Aligned_cols=63 Identities=17% Similarity=0.330 Sum_probs=36.7
Q ss_pred CCCEEEEcCCCccCcHHHHHHHhhcC---CCeEEEEEeecCCCCCcccEEE-EEeCCHHHHHHHHHHh
Q 012289 4 DNGKLFIGGISWDTNEERLKEYFSTY---GEVVEAVIMKDRNTGRARGFGF-VVFADPAVAEIVIQEK 67 (466)
Q Consensus 4 d~~~LfVgnLP~~~teeeL~~~F~~~---G~V~~v~i~~d~~tg~srGfaF-VeF~~~e~A~~Al~~~ 67 (466)
+.++|.|.-||+.++.++|.+...+. .+|..|.=++|..+. ..++-| |+++....++..+..+
T Consensus 235 ~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd-~~gvrivI~lk~~~~~~~~l~~L 301 (470)
T 3ilw_A 235 GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSD-RVGLRIVIEIKRDAVAKVVINNL 301 (470)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBT-TTBCCEEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCC-CCceEEEEEECCCCCHHHHHHHH
Confidence 45679999999999998877766432 333333434544122 224545 5565545555555443
No 422
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=24.10 E-value=1.5e+02 Score=24.11 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=35.6
Q ss_pred ceeeecCCCCCCCHHHHHHHHhh-------cCCeeEEEEEecCCCCCcce---EEEEEecCHHHHHH
Q 012289 106 RKIFVGGLASTVTESDFKKYFDQ-------FGTITDVVVMYDHNTQRPRG---FGFITYDSEEAVDK 162 (466)
Q Consensus 106 ~~LfV~nLp~~vteedLk~~F~~-------fG~I~~v~i~~d~~tg~~rG---~aFV~F~s~e~A~~ 162 (466)
+.|.+-.|.+.+++++++++.+. ...|+.+.+-++.. .+.++ .-.++|++.++.++
T Consensus 23 ~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 23 RHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 33444478889888876666544 34577777766654 33333 34557888888775
No 423
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=23.65 E-value=78 Score=29.20 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=55.5
Q ss_pred CCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeC---CHHHHHHHHH---Hhcc-----CCCceEEEeecC
Q 012289 13 ISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA---DPAVAEIVIQ---EKHN-----IDGRMVEAKKAV 81 (466)
Q Consensus 13 LP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~---~~e~A~~Al~---~~~~-----i~Gr~I~V~~a~ 81 (466)
+..+....+|+++|+.++++..+.++.++.- +|-.=+.+. +.+++..+++ ..++ .++..+.|.++.
T Consensus 9 ~sl~f~~~~i~~vl~~la~~~g~n~vvd~~V---~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~ 85 (241)
T 3ezj_A 9 FTANFKDTDLKSFIETVGANLNKTIIMGPGV---QGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSS 85 (241)
T ss_dssp BCCEEEEEEHHHHHHHHHHHHTCEEEC---C---CCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC-
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCeEEECCCC---cceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhH
Confidence 3445566678888887877777777776542 344445554 4666666654 3343 257777776654
Q ss_pred CcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhc
Q 012289 82 PRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQF 129 (466)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~f 129 (466)
....................+..++.+.+.+....--...|+.++..-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~t~vi~L~~~~a~~l~~~L~~l~~~~ 133 (241)
T 3ezj_A 86 AAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSA 133 (241)
T ss_dssp ------------------CCCEEEEEEECCSSCGGGTHHHHHHHHHHH
T ss_pred HhhhcCCccccCCCCCCCCCceEEEEEEecccCHHHHHHHHHHHhCcC
Confidence 322111000000000011112234556566665555566777777665
No 424
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=23.33 E-value=1.3e+02 Score=23.60 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=29.0
Q ss_pred cHHHHHHHhhc----CC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 012289 18 NEERLKEYFST----YG-EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQE 66 (466)
Q Consensus 18 teeeL~~~F~~----~G-~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~ 66 (466)
.|+.+++.+++ .+ +|.++.++. ..+||.||++...++...+++.
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHC
Confidence 45555555542 22 355555543 3789999999999888888765
No 425
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=23.18 E-value=1.3e+02 Score=31.52 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=32.4
Q ss_pred CCEEEEcCCCccCcHHHHHHHhhcC---CCeEEEEEeecCCCCCcccEEE-EEeCCHHHHHHHHHHhc
Q 012289 5 NGKLFIGGISWDTNEERLKEYFSTY---GEVVEAVIMKDRNTGRARGFGF-VVFADPAVAEIVIQEKH 68 (466)
Q Consensus 5 ~~~LfVgnLP~~~teeeL~~~F~~~---G~V~~v~i~~d~~tg~srGfaF-VeF~~~e~A~~Al~~~~ 68 (466)
.++|.|.-||+.++.++|.+...+. .+|..|.=++|..+ ..+.-| |+++....++..+..+.
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd--~~gvrivIelk~~~~~e~vl~~L~ 340 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETD--RTGLRIAIELKKDVNSESIKNYLY 340 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCB--TTBCCEEEEC------CHHHHHHT
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCC--CCceEEEEEECCCcCHHHHHHHHH
Confidence 3689999999999998887755432 33333333444322 234555 45665555666665543
No 426
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.70 E-value=69 Score=34.45 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=40.6
Q ss_pred cCCCCCCCHHHHHHHHh----hcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHHC
Q 012289 111 GGLASTVTESDFKKYFD----QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVKRAV 167 (466)
Q Consensus 111 ~nLp~~vteedLk~~F~----~fG~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Ai~~l 167 (466)
..++.+.+--||+++|- .+|.|+++.|..-+. -+.+.+++|.|.+.+++.+++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 34455555568888883 578999998865443 344678899999999988887765
No 427
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=22.37 E-value=1.9e+02 Score=20.23 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=41.7
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEec----CHHHHHHHHHHCCC
Q 012289 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD----SEEAVDKVKRAVPK 169 (466)
Q Consensus 106 ~~LfV~nLp~~vteedLk~~F~~fG~I~~v~i~~d~~tg~~rG~aFV~F~----s~e~A~~Ai~~l~~ 169 (466)
.++.|.++.-.-=...|++.+++.-.|..+.+-.. ...+.|+|+ +.++..++++.+..
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~Gy 65 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDAGF 65 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 45777777655556788888998888888887544 346889885 46777777776553
No 428
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=22.22 E-value=1.9e+02 Score=19.73 Aligned_cols=50 Identities=6% Similarity=0.144 Sum_probs=37.8
Q ss_pred CCCCCCEEEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCC
Q 012289 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFAD 56 (466)
Q Consensus 1 m~~d~~~LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~ 56 (466)
|.....++.|.++.-..-...|++.+.+.-.|..+.+-.. ...+.|+|..
T Consensus 1 m~~~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~ 50 (75)
T 1yjr_A 1 MGDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDP 50 (75)
T ss_dssp CCCCCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECT
T ss_pred CCceEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECC
Confidence 6667778899998776677889999998888887776432 2467788864
No 429
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=21.91 E-value=3e+02 Score=22.64 Aligned_cols=48 Identities=19% Similarity=0.109 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccC
Q 012289 19 EERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNI 70 (466)
Q Consensus 19 eeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~i 70 (466)
.+++.+.+.++-+|.+|..+. |...=++.|...+.++.++.++++..+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~t----G~~d~~~~v~~~~~~~l~~~~~~l~~v 125 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIA----GAACYMLKINAESLEAVEDFINKTSPY 125 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEE----SSSSEEEEEEESSHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcChhhheeeeee----CCCCEEEEEEECCHHHHHHHHHHhcCc
Confidence 678888999999999998765 344457788899999999998876543
No 430
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=21.73 E-value=2.6e+02 Score=24.75 Aligned_cols=128 Identities=9% Similarity=-0.034 Sum_probs=63.1
Q ss_pred CEEEEcCC----CccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeC---CHHHHHHHHHH-hccCCCceEEE
Q 012289 6 GKLFIGGI----SWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFA---DPAVAEIVIQE-KHNIDGRMVEA 77 (466)
Q Consensus 6 ~~LfVgnL----P~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~---~~e~A~~Al~~-~~~i~Gr~I~V 77 (466)
..+++++| ...+.-.||+++|+..| ..+|+..- ++| - |.|. ++++.++.|++ +..-.+..+.|
T Consensus 7 yiaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI--~SG----N--vvF~s~~~~~~l~~~ie~~l~~~fg~~v~v 77 (183)
T 2hiy_A 7 YALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYI--NSG----N--IFFTSIDSKAQLVEKLETFFAVHYPFIQSF 77 (183)
T ss_dssp EEEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEET--TTT----E--EEEEECSCHHHHHHHHHHHHHHHCTTCCCC
T ss_pred hhhhccceecCCCCcccHHHHHHHHHHcC-CccceEEE--ecC----C--EEEecCCCHHHHHHHHHHHHHHhcCCCCCE
Confidence 34677777 34688999999999987 34444332 222 3 4443 33333334442 22222222222
Q ss_pred eecCCcchhhhhccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEE-Eec
Q 012289 78 KKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFI-TYD 155 (466)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~vteedLk~~F~~fG-~I~~v~i~~d~~tg~~rG~aFV-~F~ 155 (466)
-.-...+-.......+... .. +..+++|-=|+..++.++|.+.+...- ..+++.+. ....|+ .|.
T Consensus 78 ~vrs~~el~~i~~~~Pf~~----~~-~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~--------~~~iy~~~~~ 144 (183)
T 2hiy_A 78 SLLSLEDFEAELENLPAWW----SR-DLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFG--------KLGIFWGKFS 144 (183)
T ss_dssp EEEEHHHHHHHHTTCCGGG----GS-CCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEEC--------SSEEEEEECC
T ss_pred EEecHHHHHHHHHhCCCCc----cC-CCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEE--------CCEEEEEEeC
Confidence 2211111111111111100 00 245677777788888888777665443 44555553 236677 673
No 431
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=21.05 E-value=43 Score=19.97 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=10.8
Q ss_pred cHHHHHHHhhcC
Q 012289 18 NEERLKEYFSTY 29 (466)
Q Consensus 18 teeeL~~~F~~~ 29 (466)
+|.||++|.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 789999999987
No 432
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.47 E-value=99 Score=24.34 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=21.0
Q ss_pred CeeEEEEEecCCCCCcceEEEEEecC
Q 012289 131 TITDVVVMYDHNTQRPRGFGFITYDS 156 (466)
Q Consensus 131 ~I~~v~i~~d~~tg~~rG~aFV~F~s 156 (466)
+|++|+|.+-...++-|++|-|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887766668889999999976
No 433
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=20.37 E-value=1.1e+02 Score=27.52 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=36.3
Q ss_pred EEEcCCCccCcHHHHHHHhhcCCCeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccC----CCceEEEe
Q 012289 8 LFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNI----DGRMVEAK 78 (466)
Q Consensus 8 LfVgnLP~~~teeeL~~~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~i----~Gr~I~V~ 78 (466)
|+|-....+..++.|+++-+.-=+|+ .+-.+ .....-+.+|.+.+.+.++.+.+.+.+. ..++|-+-
T Consensus 63 ii~~~~~~~~~~~~~~~~~~~~ipvV--~~~~~--~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i 133 (276)
T 3ksm_A 63 LILAPNSAEDLTPSVAQYRARNIPVL--VVDSD--LAGDAHQGLVATDNYAAGQLAARALLATLDLSKERNIALL 133 (276)
T ss_dssp EEECCSSTTTTHHHHHHHHHTTCCEE--EESSC--CSSSCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHCCCcEE--EEecC--CCCCCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEE
Confidence 45544444455666665544311332 22121 1112225889999999999988877664 44555443
No 434
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2
Probab=20.33 E-value=89 Score=31.89 Aligned_cols=21 Identities=5% Similarity=0.221 Sum_probs=14.2
Q ss_pred eeeecCCCCCCCHHHHHHHHh
Q 012289 107 KIFVGGLASTVTESDFKKYFD 127 (466)
Q Consensus 107 ~LfV~nLp~~vteedLk~~F~ 127 (466)
+-.|.+.+..++++++++.++
T Consensus 103 TY~i~~~t~~l~~~~v~~~i~ 123 (425)
T 1l6j_A 103 TYWIQNYSEDLPRAVIDDAFA 123 (425)
T ss_dssp EEEECCCCTTSCHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHH
Confidence 445667788888777766654
No 435
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=20.32 E-value=2.6e+02 Score=20.43 Aligned_cols=65 Identities=9% Similarity=0.131 Sum_probs=38.5
Q ss_pred EEEEcCCCccCcHHHHHHHhhcCC-CeEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccCCCc
Q 012289 7 KLFIGGISWDTNEERLKEYFSTYG-EVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNIDGR 73 (466)
Q Consensus 7 ~LfVgnLP~~~teeeL~~~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~~~e~A~~Al~~~~~i~Gr 73 (466)
+|.|.-....-.-.+|.++|.+.+ .|.++.+.... ....-..-|+..+.+..+++++++..+.+-
T Consensus 7 ~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V 72 (88)
T 2ko1_A 7 GIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD--GIFTCNLMIFVKNTDKLTTLMDKLRKVQGV 72 (88)
T ss_dssp EEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS--SEEEEEEEEEESSHHHHHHHHHHHTTCTTE
T ss_pred EEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC--CEEEEEEEEEECCHHHHHHHHHHHhcCCCc
Confidence 343433333335678889998876 47777665432 111111224456788888888888777654
No 436
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=20.19 E-value=2.4e+02 Score=23.08 Aligned_cols=56 Identities=9% Similarity=0.018 Sum_probs=34.2
Q ss_pred eeeecCCCCCCCHHHHHHHHh-------hcCCeeEEEEEecCCCC-CcceEEEEEecCHHHHHH
Q 012289 107 KIFVGGLASTVTESDFKKYFD-------QFGTITDVVVMYDHNTQ-RPRGFGFITYDSEEAVDK 162 (466)
Q Consensus 107 ~LfV~nLp~~vteedLk~~F~-------~fG~I~~v~i~~d~~tg-~~rG~aFV~F~s~e~A~~ 162 (466)
.|.+-.|.+.+++++++++.+ +...|+.+.+-++.... .-.-.-.++|++.++.+.
T Consensus 23 HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 23 HTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 333446777877776555553 34568888877665431 122334458899888776
Done!