Query 012290
Match_columns 466
No_of_seqs 376 out of 3123
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 01:04:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 2.8E-49 6.1E-54 382.5 26.8 266 162-460 2-274 (397)
2 KOG0549 FKBP-type peptidyl-pro 100.0 5.1E-32 1.1E-36 234.2 16.9 176 200-384 1-179 (188)
3 KOG0549 FKBP-type peptidyl-pro 100.0 3.7E-30 8E-35 222.6 16.3 171 81-259 1-177 (188)
4 KOG0543 FKBP-type peptidyl-pro 100.0 2.9E-29 6.3E-34 243.5 20.2 186 37-258 1-190 (397)
5 COG0545 FkpA FKBP-type peptidy 100.0 2.3E-28 4.9E-33 216.6 12.2 115 18-143 90-204 (205)
6 KOG0544 FKBP-type peptidyl-pro 100.0 7.9E-28 1.7E-32 183.6 11.5 107 30-144 2-108 (108)
7 KOG0544 FKBP-type peptidyl-pro 99.9 9.7E-27 2.1E-31 177.7 11.8 107 268-381 2-108 (108)
8 COG0545 FkpA FKBP-type peptidy 99.9 1.9E-24 4.2E-29 191.6 12.2 107 265-381 99-205 (205)
9 PRK11570 peptidyl-prolyl cis-t 99.9 8.9E-24 1.9E-28 194.1 14.1 114 19-143 92-205 (206)
10 KOG0552 FKBP-type peptidyl-pro 99.9 6.4E-24 1.4E-28 193.2 12.7 117 17-144 108-226 (226)
11 KOG0545 Aryl-hydrocarbon recep 99.9 2.1E-23 4.6E-28 188.7 7.6 191 265-459 8-244 (329)
12 TIGR03516 ppisom_GldI peptidyl 99.9 4.2E-22 9.1E-27 178.6 13.8 110 25-144 65-176 (177)
13 PRK10902 FKBP-type peptidyl-pr 99.9 1.7E-21 3.6E-26 185.5 14.2 116 19-146 136-251 (269)
14 PRK11570 peptidyl-prolyl cis-t 99.8 5.2E-20 1.1E-24 169.1 13.8 106 265-380 100-205 (206)
15 PF00254 FKBP_C: FKBP-type pep 99.8 1.9E-19 4.2E-24 145.8 12.5 94 41-141 1-94 (94)
16 TIGR03516 ppisom_GldI peptidyl 99.8 3E-19 6.5E-24 160.2 13.9 108 265-381 67-176 (177)
17 KOG0552 FKBP-type peptidyl-pro 99.8 2.6E-19 5.7E-24 163.1 12.0 107 265-380 118-225 (226)
18 PF00254 FKBP_C: FKBP-type pep 99.8 4E-18 8.6E-23 138.1 11.4 91 284-378 3-94 (94)
19 PRK10902 FKBP-type peptidyl-pr 99.8 1.1E-17 2.4E-22 159.3 14.5 109 265-384 144-252 (269)
20 PRK15095 FKBP-type peptidyl-pr 99.6 3.9E-15 8.5E-20 131.1 11.4 85 44-144 4-88 (156)
21 PRK15095 FKBP-type peptidyl-pr 99.5 2.2E-14 4.8E-19 126.3 10.0 71 286-360 5-75 (156)
22 COG1047 SlpA FKBP-type peptidy 99.4 1.7E-12 3.7E-17 113.8 12.6 87 44-146 2-88 (174)
23 COG1047 SlpA FKBP-type peptidy 99.4 9.3E-13 2E-17 115.4 10.2 70 287-360 4-73 (174)
24 PRK10737 FKBP-type peptidyl-pr 99.4 8E-13 1.7E-17 119.6 9.7 69 287-360 4-72 (196)
25 PRK10737 FKBP-type peptidyl-pr 99.4 6E-12 1.3E-16 113.9 12.9 84 44-144 2-85 (196)
26 TIGR00115 tig trigger factor. 98.7 3.4E-08 7.3E-13 101.6 8.8 90 44-149 146-235 (408)
27 TIGR00115 tig trigger factor. 98.7 7.1E-07 1.5E-11 91.8 16.4 87 286-384 147-233 (408)
28 PRK01490 tig trigger factor; P 98.6 9.2E-08 2E-12 99.2 8.9 88 44-147 157-244 (435)
29 COG0544 Tig FKBP-type peptidyl 98.5 2.5E-07 5.4E-12 94.8 7.5 90 45-150 158-247 (441)
30 PRK01490 tig trigger factor; P 98.5 7.9E-07 1.7E-11 92.2 11.3 86 286-383 158-243 (435)
31 COG0544 Tig FKBP-type peptidyl 98.4 7.9E-06 1.7E-10 83.8 16.2 87 287-385 159-245 (441)
32 KOG0545 Aryl-hydrocarbon recep 98.0 2E-06 4.3E-11 79.2 1.0 83 25-111 6-91 (329)
33 KOG4234 TPR repeat-containing 97.4 0.00023 5.1E-09 63.9 4.8 59 392-460 89-151 (271)
34 TIGR00990 3a0801s09 mitochondr 96.3 0.0059 1.3E-07 66.3 5.8 64 364-428 94-157 (615)
35 KOG0546 HSP90 co-chaperone CPR 96.2 0.0035 7.5E-08 61.2 3.3 72 389-460 213-292 (372)
36 KOG4648 Uncharacterized conser 96.0 0.012 2.6E-07 57.2 5.5 40 389-428 88-127 (536)
37 KOG0547 Translocase of outer m 95.5 0.015 3.3E-07 59.0 4.3 40 388-427 105-144 (606)
38 KOG0551 Hsp90 co-chaperone CNS 95.0 0.03 6.5E-07 54.4 4.6 37 397-433 80-116 (390)
39 KOG0553 TPR repeat-containing 94.5 0.054 1.2E-06 52.0 4.7 39 390-428 73-111 (304)
40 PF07719 TPR_2: Tetratricopept 92.4 0.33 7.2E-06 30.1 4.5 29 399-427 2-30 (34)
41 KOG0550 Molecular chaperone (D 92.3 0.18 3.8E-06 50.6 4.5 52 392-454 243-294 (486)
42 PF00515 TPR_1: Tetratricopept 91.4 0.49 1.1E-05 29.5 4.5 29 399-427 2-30 (34)
43 KOG0548 Molecular co-chaperone 91.3 0.24 5.3E-06 51.1 4.3 49 398-454 358-406 (539)
44 PF13176 TPR_7: Tetratricopept 90.9 0.5 1.1E-05 30.3 4.2 27 401-427 2-28 (36)
45 cd02683 MIT_1 MIT: domain cont 90.7 1.2 2.6E-05 34.2 6.7 58 397-454 5-63 (77)
46 cd02677 MIT_SNX15 MIT: domain 90.6 1.5 3.2E-05 33.5 7.1 59 396-454 4-63 (75)
47 cd02684 MIT_2 MIT: domain cont 90.0 1.7 3.7E-05 33.2 7.0 60 395-454 3-63 (75)
48 cd02656 MIT MIT: domain contai 89.8 2.1 4.6E-05 32.5 7.5 60 395-454 3-63 (75)
49 cd02678 MIT_VPS4 MIT: domain c 89.2 2.1 4.7E-05 32.5 7.1 60 395-454 3-63 (75)
50 cd02681 MIT_calpain7_1 MIT: do 88.3 2.7 5.8E-05 32.2 7.0 58 397-454 5-64 (76)
51 PF04212 MIT: MIT (microtubule 87.8 2 4.3E-05 32.0 6.0 59 396-454 3-62 (69)
52 cd02682 MIT_AAA_Arch MIT: doma 87.3 3.5 7.5E-05 31.5 7.0 59 396-454 4-63 (75)
53 smart00745 MIT Microtubule Int 86.2 4.8 0.0001 30.6 7.5 60 395-454 5-65 (77)
54 PF13414 TPR_11: TPR repeat; P 86.0 1.2 2.5E-05 32.8 3.9 30 398-427 3-32 (69)
55 PF13424 TPR_12: Tetratricopep 83.5 5.4 0.00012 30.0 6.7 50 397-454 4-53 (78)
56 PF13181 TPR_8: Tetratricopept 82.6 3.3 7.2E-05 25.5 4.4 29 399-427 2-30 (34)
57 KOG4814 Uncharacterized conser 82.5 1.8 3.9E-05 45.9 4.7 62 396-459 352-413 (872)
58 cd02680 MIT_calpain7_2 MIT: do 81.0 8.3 0.00018 29.4 6.7 35 396-430 4-38 (75)
59 PF13374 TPR_10: Tetratricopep 79.2 4.9 0.00011 25.8 4.5 33 398-430 2-34 (42)
60 PF10952 DUF2753: Protein of u 73.1 11 0.00024 31.6 5.7 54 401-454 4-57 (140)
61 KOG4642 Chaperone-dependent E3 72.7 2.3 4.9E-05 39.9 1.9 31 396-426 8-38 (284)
62 smart00028 TPR Tetratricopepti 69.7 6.4 0.00014 22.5 3.0 27 401-427 4-30 (34)
63 KOG0739 AAA+-type ATPase [Post 69.4 9.7 0.00021 37.1 5.3 61 394-454 6-68 (439)
64 PF13424 TPR_12: Tetratricopep 62.6 16 0.00034 27.3 4.6 34 396-429 44-77 (78)
65 PF13428 TPR_14: Tetratricopep 61.0 12 0.00026 24.8 3.2 26 402-427 5-30 (44)
66 PF13432 TPR_16: Tetratricopep 57.6 9.3 0.0002 27.4 2.4 25 403-427 2-26 (65)
67 PLN03088 SGT1, suppressor of 56.2 13 0.00029 37.4 4.0 30 398-427 2-31 (356)
68 KOG0550 Molecular chaperone (D 55.8 17 0.00037 36.9 4.5 38 391-428 42-79 (486)
69 PF08631 SPO22: Meiosis protei 52.4 25 0.00055 34.0 5.2 40 388-427 236-275 (278)
70 PF08631 SPO22: Meiosis protei 52.2 34 0.00074 33.0 6.0 66 388-454 25-91 (278)
71 cd02679 MIT_spastin MIT: domai 51.2 1.1E+02 0.0024 23.6 7.4 52 403-454 13-70 (79)
72 PF13432 TPR_16: Tetratricopep 50.5 34 0.00075 24.3 4.5 30 398-427 31-60 (65)
73 PF10579 Rapsyn_N: Rapsyn N-te 48.4 1.1E+02 0.0023 23.7 6.7 34 397-430 5-38 (80)
74 PF13174 TPR_6: Tetratricopept 47.8 33 0.00071 20.4 3.4 26 402-427 4-29 (33)
75 KOG0376 Serine-threonine phosp 47.7 13 0.00028 38.4 2.3 31 397-427 3-33 (476)
76 KOG0548 Molecular co-chaperone 46.9 17 0.00037 38.0 3.0 30 398-427 2-31 (539)
77 PF08969 USP8_dimer: USP8 dime 43.3 73 0.0016 26.2 5.9 44 387-430 27-70 (115)
78 KOG1840 Kinesin light chain [C 42.5 47 0.001 35.2 5.6 37 396-432 239-275 (508)
79 KOG2003 TPR repeat-containing 42.4 14 0.0003 37.9 1.5 48 403-460 242-293 (840)
80 PF06957 COPI_C: Coatomer (COP 42.3 87 0.0019 32.3 7.2 41 401-441 207-247 (422)
81 PF14559 TPR_19: Tetratricopep 40.6 23 0.00051 25.4 2.2 20 408-427 1-20 (68)
82 PF09122 DUF1930: Domain of un 40.2 34 0.00073 24.9 2.8 23 209-231 35-57 (68)
83 KOG0553 TPR repeat-containing 38.3 81 0.0018 30.8 5.9 30 398-427 149-178 (304)
84 PF09976 TPR_21: Tetratricopep 38.3 40 0.00086 28.8 3.7 26 400-425 120-145 (145)
85 PF13414 TPR_11: TPR repeat; P 38.3 57 0.0012 23.4 4.1 30 398-427 37-67 (69)
86 PF10516 SHNi-TPR: SHNi-TPR; 36.7 69 0.0015 20.8 3.7 28 403-430 6-33 (38)
87 KOG2114 Vacuolar assembly/sort 35.9 37 0.00081 37.6 3.6 33 398-430 368-400 (933)
88 PF10602 RPN7: 26S proteasome 34.3 1.2E+02 0.0025 27.3 6.1 30 398-427 36-65 (177)
89 PF12968 DUF3856: Domain of Un 33.4 1.1E+02 0.0025 25.7 5.2 52 389-440 42-97 (144)
90 PF15015 NYD-SP12_N: Spermatog 32.2 95 0.0021 31.9 5.5 29 402-430 180-208 (569)
91 PLN03098 LPA1 LOW PSII ACCUMUL 31.6 64 0.0014 33.5 4.3 31 397-427 74-104 (453)
92 PF09122 DUF1930: Domain of un 31.3 64 0.0014 23.5 3.0 24 330-353 34-57 (68)
93 PF12895 Apc3: Anaphase-promot 30.6 83 0.0018 23.8 4.0 18 404-421 31-48 (84)
94 PF13371 TPR_9: Tetratricopept 30.0 78 0.0017 22.9 3.7 29 399-427 30-58 (73)
95 PF07720 TPR_3: Tetratricopept 29.3 1.5E+02 0.0033 18.9 4.3 26 401-426 4-31 (36)
96 PF14938 SNAP: Soluble NSF att 29.1 87 0.0019 30.2 4.8 34 397-430 113-147 (282)
97 PRK10370 formate-dependent nit 25.3 1.2E+02 0.0025 27.7 4.6 31 399-429 145-175 (198)
98 PF04010 DUF357: Protein of un 24.1 2.2E+02 0.0048 21.6 5.1 40 390-429 27-66 (75)
99 KOG0292 Vesicle coat complex C 23.5 2.1E+02 0.0045 32.3 6.5 55 395-449 988-1042(1202)
100 PRK02603 photosystem I assembl 22.3 1.7E+02 0.0036 25.7 4.9 31 397-427 34-64 (172)
101 PRK15359 type III secretion sy 21.9 1.1E+02 0.0025 26.0 3.6 28 399-426 59-86 (144)
102 COG1729 Uncharacterized protei 21.1 1.3E+02 0.0029 28.8 4.1 29 404-432 184-212 (262)
103 PF13838 Clathrin_H_link: Clat 20.4 1.3E+02 0.0027 22.4 3.0 25 400-424 8-32 (66)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-49 Score=382.47 Aligned_cols=266 Identities=36% Similarity=0.553 Sum_probs=246.1
Q ss_pred cCCCCCCCCCCCeEEEEEEEEeCCCcEEeeccCCcCEEEEcCCCCCcchHHHHhhcCccccEEEEEEcccccCCCCCCCC
Q 012290 162 EGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPV 241 (466)
Q Consensus 162 ~G~g~~~p~~gd~v~v~y~~~~~dg~~~~s~~~~~p~~f~~g~~~~~~gl~~~l~~M~~Ge~~~i~v~~~~~~g~~~~~~ 241 (466)
+|.|+.+|..|+.|.+||++++.||+.|+|+.++.|+.|.+|.|+++.||+.++.+|+.|+. ..++.
T Consensus 2 eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~g~~-------------~~pp~ 68 (397)
T KOG0543|consen 2 EGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKKGEA-------------GSPPK 68 (397)
T ss_pred CCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCcccccccccccccccccc-------------CCCCC
Confidence 68899999999999999999999999999987799999999999999999999999999332 56788
Q ss_pred cCCCceEEEEEEeeeeeeeecccCCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEE
Q 012290 242 VEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321 (466)
Q Consensus 242 ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~g~~~~~~p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~ 321 (466)
||++++|.|+|+|. |++|+|+|+++|.|. ..+|..|..|.+||.|++.+ + +|+++. .+|.
T Consensus 69 ip~~a~l~fe~el~----------Dg~iiKriir~G~gd--~~~P~~g~~V~v~~~G~~~~--~-~f~~~~-----~~fe 128 (397)
T KOG0543|consen 69 IPSNATLLFEVELL----------DGGIIKRIIREGEGD--YSRPNKGAVVKVHLEGELED--G-VFDQRE-----LRFE 128 (397)
T ss_pred CCCCcceeeeeccc----------CCceEEeeeecCCCC--CCCCCCCcEEEEEEEEEECC--c-ceeccc-----cceE
Confidence 99999999999998 899999999999996 26799999999999999977 4 674433 4489
Q ss_pred EEeCC-CCcchHHHHHHhccCCCcEEEEEecCCCccc-cCCCCCCCCCCceEEEEEEEEeee-cCCCCCCCChhhhHHHH
Q 012290 322 FSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGAHIQWEIELLGFE-KPKDWTGLSFDGIMDEA 398 (466)
Q Consensus 322 f~lG~-~~~~~gle~~l~~M~~GE~~~~~i~~~~~yg-~~~~~~~ip~~~~l~f~vell~v~-~~~~~~~~~~ee~~~~a 398 (466)
|.+|+ ..++.||+.||+.|++||++.|+|+|+|+|| ..++++.|||+++|.|+|+|++|. .....|.|..+++++.|
T Consensus 129 ~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A 208 (397)
T KOG0543|consen 129 FGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAA 208 (397)
T ss_pred EecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHH
Confidence 99998 5799999999999999999999999999999 556677999999999999999999 77888999999999999
Q ss_pred HHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhhhh----cCCCCc
Q 012290 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRLHACSNWE----NAESPS 460 (466)
Q Consensus 399 ~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~~~~ee~~~~~~~k~~~~lNla----kl~~~~ 460 (466)
.+.|++||.+||+|+|..|..+|+||+++|+++...+++|.+++.++|+.|||||| ||+.+.
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999 888776
No 2
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-32 Score=234.17 Aligned_cols=176 Identities=23% Similarity=0.336 Sum_probs=148.6
Q ss_pred EEcCCCCCcchHHHHhhcCccccEEEEEEcccccCCCCCCCCcCCCceEEEEEEeeeeeee---ecccCCcceEEEEEeC
Q 012290 200 FTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQV---RDMLGDGRLIKRRIRD 276 (466)
Q Consensus 200 f~~g~~~~~~gl~~~l~~M~~Ge~~~i~v~~~~~~g~~~~~~ip~~~~l~~~v~l~~~~~~---~d~~~d~~v~k~il~~ 276 (466)
|++|.+.+++|++++|.+|+.||++++.+||+++|+... ...-..++|.+.++.+... .....+..+...++++
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~ 77 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGG---RGDLNILVITILLVLLFRASAAEKWNPDEELQIGVLKK 77 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccc---cccccceEEEeeeeehhhhhhhhhcCCCCceeEEEEEC
Confidence 467889999999999999999999999999999999422 2233456788877776543 2334556777777777
Q ss_pred CCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCcEEEEEecCCCcc
Q 012290 277 GKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY 356 (466)
Q Consensus 277 G~g~~~~~~p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~~y 356 (466)
=.. ....+..||.+.+||++.+.| |++| ||++. +++|++|+||.+++++|||++|.+||+||++.++|||+++|
T Consensus 78 p~~--C~~kak~GD~l~~HY~g~leD--Gt~f-dSS~~-rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgY 151 (188)
T KOG0549|consen 78 PEE--CPEKAKKGDTLHVHYTGSLED--GTKF-DSSYS-RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGY 151 (188)
T ss_pred Ccc--ccccccCCCEEEEEEEEEecC--CCEE-eeecc-CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccC
Confidence 222 223467899999999999988 9999 77777 79999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCceEEEEEEEEeeecCC
Q 012290 357 DKFLRPANVPEGAHIQWEIELLGFEKPK 384 (466)
Q Consensus 357 g~~~~~~~ip~~~~l~f~vell~v~~~~ 384 (466)
|++|.++.||++++|+|+|||+++.+..
T Consensus 152 G~~G~~~~IP~~A~LiFdiELv~i~~~~ 179 (188)
T KOG0549|consen 152 GERGAPPKIPGDAVLIFDIELVKIERGP 179 (188)
T ss_pred ccCCCCCCCCCCeeEEEEEEEEEeecCC
Confidence 9999998899999999999999999854
No 3
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-30 Score=222.63 Aligned_cols=171 Identities=21% Similarity=0.307 Sum_probs=140.3
Q ss_pred EEcCCCcchhcHHHHhcCCcCCcEEEEEEecccccCCCCCCCCCCCCCCCCceeEEEEEEeecccccccc---ccccEEE
Q 012290 81 HVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA---DDFGVVK 157 (466)
Q Consensus 81 ~~lg~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~g~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~---~d~gv~k 157 (466)
|.+|.+++++|++.+|.+|+.|+++.+++||+++||..+.. .-..++|.+.++.+....... .+..+.-
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I 72 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG--------DLNILVITILLVLLFRASAAEKWNPDEELQI 72 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc--------cccceEEEeeeeehhhhhhhhhcCCCCceeE
Confidence 35788899999999999999999999999999999966542 234567777777655432211 2233333
Q ss_pred EEEEc-CCCCCCCCCCCeEEEEEEEEeCCCcEEeec-cCCcCEEEEcCCCCCcchHHHHhhcCccccEEEEEEcccccCC
Q 012290 158 KVINE-GQGWETPRAPYEVKAWISAKTGDGKLILSH-REGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTP 235 (466)
Q Consensus 158 ~i~~~-G~g~~~p~~gd~v~v~y~~~~~dg~~~~s~-~~~~p~~f~~g~~~~~~gl~~~l~~M~~Ge~~~i~v~~~~~~g 235 (466)
.+..+ -.+..+.+.||.+.+||++.+.||++|||+ .++.|+.|++|.+++++||++||.+||+||++++.|||+++||
T Consensus 73 ~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG 152 (188)
T KOG0549|consen 73 GVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYG 152 (188)
T ss_pred EEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCc
Confidence 33333 236678889999999999999999999996 4688999999999999999999999999999999999999999
Q ss_pred CC-CCCCcCCCceEEEEEEeeeeee
Q 012290 236 SP-LMPVVEGCEEVHFEVELVHLIQ 259 (466)
Q Consensus 236 ~~-~~~~ip~~~~l~~~v~l~~~~~ 259 (466)
+. .++.||++++|+|||||+.+.+
T Consensus 153 ~~G~~~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 153 ERGAPPKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred cCCCCCCCCCCeeEEEEEEEEEeec
Confidence 85 4666999999999999999864
No 4
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-29 Score=243.45 Aligned_cols=186 Identities=32% Similarity=0.547 Sum_probs=169.9
Q ss_pred eccCCCCCCCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcCCcCCcEEEEEEecccccC
Q 012290 37 RPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG 116 (466)
Q Consensus 37 ~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg 116 (466)
++|.|...|..||.|.+||++++.||+.||||.+ +.|+.|.+|.+++|.||+.++..|+. |
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-----~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g 61 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-----GDPFKFDLGKGSVIKGWDLGVATMKK--------------G 61 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-----CCceeeecCCCccccccccccccccc--------------c
Confidence 4789998899999999999999999999999986 67999999999999999999999998 5
Q ss_pred CCCCCCCCCCCCCCCceeEEEEEEeeccccccccccccEEEEEEEcCCC-CCCCCCCCeEEEEEEEEeCCCcEEeeccCC
Q 012290 117 EDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREG 195 (466)
Q Consensus 117 ~~g~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~gv~k~i~~~G~g-~~~p~~gd~v~v~y~~~~~dg~~~~s~~~~ 195 (466)
..+.| +.||++++|.|+|+|+ |++|+|+|++.|.| ..+|..|..|.|||.|++.++ +|+++..
T Consensus 62 ~~~~p----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~- 125 (397)
T KOG0543|consen 62 EAGSP----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQREL- 125 (397)
T ss_pred ccCCC----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecccc-
Confidence 55654 7899999999999998 89999999999999 899999999999999999888 6766532
Q ss_pred cCEEEEcCC-CCCcchHHHHhhcCccccEEEEEEcccccCCC--CCCCCcCCCceEEEEEEeeeee
Q 012290 196 EPYFFTFGK-SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPS--PLMPVVEGCEEVHFEVELVHLI 258 (466)
Q Consensus 196 ~p~~f~~g~-~~~~~gl~~~l~~M~~Ge~~~i~v~~~~~~g~--~~~~~ip~~~~l~~~v~l~~~~ 258 (466)
.|.|..|+ ..++.||+.||+.|++||.+.|+|+|+|+||. ..++.|||++.|.|+|+|+++.
T Consensus 126 -~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 126 -RFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFE 190 (397)
T ss_pred -ceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeee
Confidence 37778887 47999999999999999999999999999994 4688999999999999999996
No 5
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-28 Score=216.57 Aligned_cols=115 Identities=30% Similarity=0.620 Sum_probs=108.4
Q ss_pred hhhccCceecCCceEEEEEeccCCCCCCCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhc
Q 012290 18 EDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIP 97 (466)
Q Consensus 18 ~~~~~~~~~~~~gl~~~i~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~ 97 (466)
-+.+...+++++||.|++++.|+|.. |..+|.|++||+|++.||++||||++ +|+|+.|.|| ++|+||.+||.
T Consensus 90 ~~k~~~v~~~~sgl~y~~~~~G~G~~-~~~~~~V~vhY~G~l~~G~vFDsS~~----rg~p~~f~l~--~vI~Gw~egl~ 162 (205)
T COG0545 90 NAKEKGVKTLPSGLQYKVLKAGDGAA-PKKGDTVTVHYTGTLIDGTVFDSSYD----RGQPAEFPLG--GVIPGWDEGLQ 162 (205)
T ss_pred hcccCCceECCCCcEEEEEeccCCCC-CCCCCEEEEEEEEecCCCCccccccc----cCCCceeecC--CeeehHHHHHh
Confidence 44567778999999999999999997 99999999999999999999999999 9999999996 99999999999
Q ss_pred CCcCCcEEEEEEecccccCCCCCCCCCCCCCCCCceeEEEEEEeec
Q 012290 98 TMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (466)
Q Consensus 98 ~m~~Ge~~~~~ip~~~~yg~~g~~~~~~~~ip~~~~l~~~v~l~~~ 143 (466)
+|++|++++++|||++|||.+|.+ +.||||++|+|+|+|+++
T Consensus 163 ~M~vG~k~~l~IP~~laYG~~g~~----g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 163 GMKVGGKRKLTIPPELAYGERGVP----GVIPPNSTLVFEVELLDV 204 (205)
T ss_pred hCCCCceEEEEeCchhccCcCCCC----CCCCCCCeEEEEEEEEec
Confidence 999999999999999999999975 559999999999999987
No 6
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.9e-28 Score=183.61 Aligned_cols=107 Identities=30% Similarity=0.602 Sum_probs=102.7
Q ss_pred ceEEEEEeccCCCCCCCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcCCcCCcEEEEEE
Q 012290 30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109 (466)
Q Consensus 30 gl~~~i~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~~~i 109 (466)
|+.++++.+|+|...|+.||.|++||++.+.||+.||||++ ++.|+.|.+|.+++|.||++++..|.+||++++.|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~d----r~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti 77 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRD----RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTI 77 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccc----cCCCeeEEecCcceeechhhcchhccccccceeee
Confidence 68999999999988899999999999999999999999999 89999999999999999999999999999999999
Q ss_pred ecccccCCCCCCCCCCCCCCCCceeEEEEEEeecc
Q 012290 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (466)
Q Consensus 110 p~~~~yg~~g~~~~~~~~ip~~~~l~~~v~l~~~~ 144 (466)
+|++|||..|.| ..||||++|+|+|||+++.
T Consensus 78 ~pd~aYG~~G~p----~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 78 SPDYAYGPRGHP----GGIPPNATLVFDVELLKVN 108 (108)
T ss_pred ccccccCCCCCC----CccCCCcEEEEEEEEEecC
Confidence 999999999964 7899999999999999863
No 7
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.7e-27 Score=177.68 Aligned_cols=107 Identities=36% Similarity=0.597 Sum_probs=100.1
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCcEEE
Q 012290 268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL 347 (466)
Q Consensus 268 ~v~k~il~~G~g~~~~~~p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE~~~ 347 (466)
++.+.+|..|+|.. .|..|++|++||++.+.| |+.| ||+.+ ++.||.|.+|.+++|.||++++..|.+||++.
T Consensus 2 Gv~~~~i~~Gdg~t---fpK~Gqtvt~hYtg~L~d--G~kf-DSs~d-r~kPfkf~IGkgeVIkGwdegv~qmsvGekak 74 (108)
T KOG0544|consen 2 GVEKQVISPGDGRT---FPKKGQTVTVHYTGTLQD--GKKF-DSSRD-RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAK 74 (108)
T ss_pred CceeEEeeCCCCcc---cCCCCCEEEEEEEeEecC--CcEe-ecccc-cCCCeeEEecCcceeechhhcchhccccccce
Confidence 47889999999963 379999999999999998 9999 77777 69999999999999999999999999999999
Q ss_pred EEecCCCccccCCCCCCCCCCceEEEEEEEEeee
Q 012290 348 VTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381 (466)
Q Consensus 348 ~~i~~~~~yg~~~~~~~ip~~~~l~f~vell~v~ 381 (466)
++|+|++|||..+.+..|||+++|+|+||||++.
T Consensus 75 Lti~pd~aYG~~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 75 LTISPDYAYGPRGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred eeeccccccCCCCCCCccCCCcEEEEEEEEEecC
Confidence 9999999999999888999999999999999873
No 8
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-24 Score=191.60 Aligned_cols=107 Identities=32% Similarity=0.532 Sum_probs=100.1
Q ss_pred CCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCc
Q 012290 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344 (466)
Q Consensus 265 ~d~~v~k~il~~G~g~~~~~~p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE 344 (466)
-.+++.+++++.|+|.. |..+++|++||+|++.| |++| ||+++ |++|+.|.|| .+|+||.++|.+|++|+
T Consensus 99 ~~sgl~y~~~~~G~G~~----~~~~~~V~vhY~G~l~~--G~vF-DsS~~-rg~p~~f~l~--~vI~Gw~egl~~M~vG~ 168 (205)
T COG0545 99 LPSGLQYKVLKAGDGAA----PKKGDTVTVHYTGTLID--GTVF-DSSYD-RGQPAEFPLG--GVIPGWDEGLQGMKVGG 168 (205)
T ss_pred CCCCcEEEEEeccCCCC----CCCCCEEEEEEEEecCC--CCcc-ccccc-cCCCceeecC--CeeehHHHHHhhCCCCc
Confidence 45899999999999986 58899999999999998 9999 77777 7999999999 79999999999999999
Q ss_pred EEEEEecCCCccccCCCCCCCCCCceEEEEEEEEeee
Q 012290 345 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381 (466)
Q Consensus 345 ~~~~~i~~~~~yg~~~~~~~ip~~~~l~f~vell~v~ 381 (466)
+++++|||++|||.++.+..|||+++|+|+|+|++|.
T Consensus 169 k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 169 KRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred eEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 9999999999999999887799999999999999873
No 9
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.91 E-value=8.9e-24 Score=194.06 Aligned_cols=114 Identities=24% Similarity=0.446 Sum_probs=106.9
Q ss_pred hhccCceecCCceEEEEEeccCCCCCCCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcC
Q 012290 19 DDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT 98 (466)
Q Consensus 19 ~~~~~~~~~~~gl~~~i~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~ 98 (466)
+.+++.+++++||+|+++++|.|.. |+.+|.|.|||++++.||++|+||+. ++.|+.|.++ .+++||+++|.+
T Consensus 92 ~k~~gv~~t~sGl~y~vi~~G~G~~-p~~~d~V~v~Y~g~l~dG~vfdss~~----~g~P~~f~l~--~vipG~~eaL~~ 164 (206)
T PRK11570 92 AKKEGVNSTESGLQFRVLTQGEGAI-PARTDRVRVHYTGKLIDGTVFDSSVA----RGEPAEFPVN--GVIPGWIEALTL 164 (206)
T ss_pred hhcCCcEECCCCcEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCEEEeccC----CCCCeEEEee--chhhHHHHHHcC
Confidence 3466888999999999999999996 99999999999999999999999998 7889999994 799999999999
Q ss_pred CcCCcEEEEEEecccccCCCCCCCCCCCCCCCCceeEEEEEEeec
Q 012290 99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (466)
Q Consensus 99 m~~Ge~~~~~ip~~~~yg~~g~~~~~~~~ip~~~~l~~~v~l~~~ 143 (466)
|++|++++|+|||+++||..+.+ +.|||+++|+|+|+|++|
T Consensus 165 M~~G~k~~~~IP~~lAYG~~g~~----~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 165 MPVGSKWELTIPHELAYGERGAG----ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CCCCCEEEEEECHHHcCCCCCCC----CCcCCCCeEEEEEEEEEE
Confidence 99999999999999999999874 679999999999999987
No 10
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.4e-24 Score=193.16 Aligned_cols=117 Identities=24% Similarity=0.479 Sum_probs=107.2
Q ss_pred ChhhccCceecCCceEEEEEeccCCCCCCCCCCEEEEEEEEEEc-CCcEEEecccCCCCCCccEE-EEcCCCcchhcHHH
Q 012290 17 SEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIR-HVLGKSKILLGLLE 94 (466)
Q Consensus 17 ~~~~~~~~~~~~~gl~~~i~~~G~G~~~~~~gd~V~v~y~~~~~-dg~~~~st~~~~~~~~~p~~-~~lg~~~~~~g~~~ 94 (466)
-+++.+...+.++||+|+.++.|.|+. +..|+.|.|||.+++. +|.+|++++. +.|+. |.+|.+++|+||+.
T Consensus 108 ~ek~~~~~~tl~~Gl~y~D~~vG~G~~-a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-----~kp~~~f~lg~g~VIkG~d~ 181 (226)
T KOG0552|consen 108 VEKQKPKSRTLPGGLRYEDLRVGSGPS-AKKGKRVSVRYIGKLKGNGKVFDSNFG-----GKPFKLFRLGSGEVIKGWDV 181 (226)
T ss_pred ccccCccceecCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEecCCCeEeecccC-----CCCccccccCCCCCCchHHH
Confidence 344444447899999999999999997 9999999999999998 9999999985 67888 99999999999999
Q ss_pred HhcCCcCCcEEEEEEecccccCCCCCCCCCCCCCCCCceeEEEEEEeecc
Q 012290 95 GIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (466)
Q Consensus 95 ~l~~m~~Ge~~~~~ip~~~~yg~~g~~~~~~~~ip~~~~l~~~v~l~~~~ 144 (466)
++.+|++|++|+|+|||++|||..++ +.||||++|+|+|+|+.+.
T Consensus 182 gv~GMkvGGkRrviIPp~lgYg~~g~-----~~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 182 GVEGMKVGGKRRVIIPPELGYGKKGV-----PEIPPNSTLVFDVELLSVK 226 (226)
T ss_pred hhhhhccCCeeEEEeCccccccccCc-----CcCCCCCcEEEEEEEEecC
Confidence 99999999999999999999999998 4799999999999999863
No 11
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.1e-23 Score=188.68 Aligned_cols=191 Identities=24% Similarity=0.278 Sum_probs=160.5
Q ss_pred CCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCc
Q 012290 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344 (466)
Q Consensus 265 ~d~~v~k~il~~G~g~~~~~~p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE 344 (466)
.-.+|.|+|+..|.|..|..+ +|+.|++||.....++.++++|||+. .++|+++++|...-+|.||.+|.+|+++|
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~--dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~E 83 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFI--DGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHE 83 (329)
T ss_pred cchhhhHhhccCCCccCcccc--CCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhh
Confidence 446899999999999988765 59999999999999877889988886 59999999999999999999999999999
Q ss_pred EEEEEecCCC--------------ccccC--------------------CC---CCCCCCCceEEEEEEEEeeecCC---
Q 012290 345 IALVTCPPDY--------------AYDKF--------------------LR---PANVPEGAHIQWEIELLGFEKPK--- 384 (466)
Q Consensus 345 ~~~~~i~~~~--------------~yg~~--------------------~~---~~~ip~~~~l~f~vell~v~~~~--- 384 (466)
.+.|+|.-.. +-|.. |. +......++|+|.|+|+.|..|.
T Consensus 84 vaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq 163 (329)
T KOG0545|consen 84 VAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQ 163 (329)
T ss_pred HHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhc
Confidence 9999887521 11111 10 11123357899999999999986
Q ss_pred -CCCCCChhhhHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccC---CCCCchHHHHHHHHHHHHHhhhh--cCCC
Q 012290 385 -DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV---NPQDDEEGKVFVGKRLHACSNWE--NAES 458 (466)
Q Consensus 385 -~~~~~~~ee~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~---~~~~~ee~~~~~~~k~~~~lNla--kl~~ 458 (466)
+.|.|+.++++..+..++++||.+|+.|+|..|..+|+.|+.+|.+. ....++|+.++.+...++|+|++ +|..
T Consensus 164 ~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~ 243 (329)
T KOG0545|consen 164 RETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKK 243 (329)
T ss_pred cccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhH
Confidence 46899999999999999999999999999999999999999998763 34456789999999999999999 5544
Q ss_pred C
Q 012290 459 P 459 (466)
Q Consensus 459 ~ 459 (466)
.
T Consensus 244 ~ 244 (329)
T KOG0545|consen 244 E 244 (329)
T ss_pred H
Confidence 3
No 12
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.88 E-value=4.2e-22 Score=178.64 Aligned_cols=110 Identities=19% Similarity=0.337 Sum_probs=101.1
Q ss_pred eecCCceEEEEEec--cCCCCCCCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcCCcCC
Q 012290 25 KIVPGSLMKAVMRP--GGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKG 102 (466)
Q Consensus 25 ~~~~~gl~~~i~~~--G~G~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G 102 (466)
+.+++|++|.+++. |.|.. |+.||.|++||++++.||++|+|+++ . .|+.|.+|.+++++||+++|.+|++|
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g~~-p~~gd~V~v~Y~~~~~dG~v~~ss~~----~-~P~~f~vg~~~vi~Gl~e~L~~Mk~G 138 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEGTT-PEFGDLVTFEYDIRALDGDVIYSEEE----L-GPQTYKVDQQDLFSGLRDGLKLMKEG 138 (177)
T ss_pred eECCCccEEEEEEecCCCCCc-CCCCCEEEEEEEEEeCCCCEEEeCCC----C-CCEEEEeCCcchhHHHHHHHcCCCCC
Confidence 67899999999977 55554 99999999999999999999999986 3 49999999999999999999999999
Q ss_pred cEEEEEEecccccCCCCCCCCCCCCCCCCceeEEEEEEeecc
Q 012290 103 EVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (466)
Q Consensus 103 e~~~~~ip~~~~yg~~g~~~~~~~~ip~~~~l~~~v~l~~~~ 144 (466)
|+++|+|||++|||..|.+ ..||||++|+|+|+|++|.
T Consensus 139 e~~~~~iP~~~AYG~~g~~----~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 139 ETATFLFPSHKAYGYYGDQ----NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CEEEEEECHHHcCCCCCCC----CCcCcCCcEEEEEEEEEec
Confidence 9999999999999999864 6799999999999999985
No 13
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.87 E-value=1.7e-21 Score=185.46 Aligned_cols=116 Identities=24% Similarity=0.501 Sum_probs=107.3
Q ss_pred hhccCceecCCceEEEEEeccCCCCCCCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcC
Q 012290 19 DDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT 98 (466)
Q Consensus 19 ~~~~~~~~~~~gl~~~i~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~ 98 (466)
+.+++.+++++||+|+++++|+|.. |+.||.|.|||++++.||++|++++. ++.|+.|.+ +.+++||+++|.+
T Consensus 136 ~k~~gv~~t~sGl~y~Vi~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--~~vipG~~EaL~~ 208 (269)
T PRK10902 136 AKEKGVKTTSTGLLYKVEKEGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKN 208 (269)
T ss_pred ccCCCcEECCCccEEEEEeCCCCCC-CCCCCEEEEEEEEEeCCCCEeecccc----CCCceEEec--CCcchHHHHHHhc
Confidence 4556788999999999999999996 99999999999999999999999998 788999999 5699999999999
Q ss_pred CcCCcEEEEEEecccccCCCCCCCCCCCCCCCCceeEEEEEEeecccc
Q 012290 99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146 (466)
Q Consensus 99 m~~Ge~~~~~ip~~~~yg~~g~~~~~~~~ip~~~~l~~~v~l~~~~~~ 146 (466)
|++|++++|+|||+++||..+. +.||||++|+|+|+|+++.+.
T Consensus 209 Mk~Gek~~l~IP~~laYG~~g~-----~gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 209 IKKGGKIKLVIPPELAYGKAGV-----PGIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred CCCCcEEEEEECchhhCCCCCC-----CCCCCCCcEEEEEEEEEeccC
Confidence 9999999999999999999885 469999999999999999754
No 14
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=5.2e-20 Score=169.14 Aligned_cols=106 Identities=31% Similarity=0.484 Sum_probs=97.5
Q ss_pred CCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCc
Q 012290 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344 (466)
Q Consensus 265 ~d~~v~k~il~~G~g~~~~~~p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE 344 (466)
.+.++.++|+++|+|.. |..++.|+|||++++.| |++| +++++ +++|+.|.+| .+++||+++|.+|++|+
T Consensus 100 t~sGl~y~vi~~G~G~~----p~~~d~V~v~Y~g~l~d--G~vf-dss~~-~g~P~~f~l~--~vipG~~eaL~~M~~G~ 169 (206)
T PRK11570 100 TESGLQFRVLTQGEGAI----PARTDRVRVHYTGKLID--GTVF-DSSVA-RGEPAEFPVN--GVIPGWIEALTLMPVGS 169 (206)
T ss_pred CCCCcEEEEEeCCCCCC----CCCCCEEEEEEEEEECC--CCEE-EeccC-CCCCeEEEee--chhhHHHHHHcCCCCCC
Confidence 45789999999999975 68999999999999987 9999 66665 5899999997 59999999999999999
Q ss_pred EEEEEecCCCccccCCCCCCCCCCceEEEEEEEEee
Q 012290 345 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380 (466)
Q Consensus 345 ~~~~~i~~~~~yg~~~~~~~ip~~~~l~f~vell~v 380 (466)
++.|+|||+++||+.+.++.|||+++|+|+|+|++|
T Consensus 170 k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 170 KWELTIPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred EEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 999999999999999988789999999999999987
No 15
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.82 E-value=1.9e-19 Score=145.82 Aligned_cols=94 Identities=36% Similarity=0.639 Sum_probs=86.8
Q ss_pred CCCCCCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcCCcCCcEEEEEEecccccCCCCC
Q 012290 41 GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC 120 (466)
Q Consensus 41 G~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~g~ 120 (466)
|+++|+.||.|+|||++++.+|++|++++. .+.|+.|.+|.+++++||++||.+|++||+++|+|||+++||+.+.
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~----~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~ 76 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ----EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGL 76 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTT----TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTB
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeee----cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCcccc
Confidence 455699999999999999999999999987 6789999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCceeEEEEEEe
Q 012290 121 PVAAPSTFPKDEELHFEIEMI 141 (466)
Q Consensus 121 ~~~~~~~ip~~~~l~~~v~l~ 141 (466)
. +..||++++|+|+|+|+
T Consensus 77 ~---~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 77 E---PPKIPPNSTLVFEIELL 94 (94)
T ss_dssp C---TTTBTTTSEEEEEEEEE
T ss_pred C---CCCcCCCCeEEEEEEEC
Confidence 3 24599999999999986
No 16
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.81 E-value=3e-19 Score=160.23 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=95.9
Q ss_pred CCcceEEEEEeC--CCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCC
Q 012290 265 GDGRLIKRRIRD--GKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLP 342 (466)
Q Consensus 265 ~d~~v~k~il~~--G~g~~~~~~p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~ 342 (466)
...|+.++++.. |+|.. |..||.|++||++++.| |++|+ ++++ ..|+.|.+|.+++++||+++|.+|++
T Consensus 67 t~sGl~Y~v~~~~~g~g~~----p~~gd~V~v~Y~~~~~d--G~v~~-ss~~--~~P~~f~vg~~~vi~Gl~e~L~~Mk~ 137 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEGTT----PEFGDLVTFEYDIRALD--GDVIY-SEEE--LGPQTYKVDQQDLFSGLRDGLKLMKE 137 (177)
T ss_pred CCCccEEEEEEecCCCCCc----CCCCCEEEEEEEEEeCC--CCEEE-eCCC--CCCEEEEeCCcchhHHHHHHHcCCCC
Confidence 457888888876 55543 68999999999999988 99994 4443 46999999999999999999999999
Q ss_pred CcEEEEEecCCCccccCCCCCCCCCCceEEEEEEEEeee
Q 012290 343 GEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381 (466)
Q Consensus 343 GE~~~~~i~~~~~yg~~~~~~~ip~~~~l~f~vell~v~ 381 (466)
||++.|++||++|||..+....|||+++|+|+|+|++|.
T Consensus 138 Ge~~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 138 GETATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CCEEEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 999999999999999999877899999999999999985
No 17
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.6e-19 Score=163.10 Aligned_cols=107 Identities=31% Similarity=0.513 Sum_probs=98.8
Q ss_pred CCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEE-EEeCCCCcchHHHHHHhccCCC
Q 012290 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE-FSSGEGLVPEGFEMCVRLMLPG 343 (466)
Q Consensus 265 ~d~~v~k~il~~G~g~~~~~~p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~-f~lG~~~~~~gle~~l~~M~~G 343 (466)
-.++|+++-++-|+|+. |..|++|.+||.+++.. +|.+| |+++. +.|+. |.+|.+.+|+||+.+|.+|++|
T Consensus 118 l~~Gl~y~D~~vG~G~~----a~~G~rV~v~Y~Gkl~~-~GkvF-d~~~~--~kp~~~f~lg~g~VIkG~d~gv~GMkvG 189 (226)
T KOG0552|consen 118 LPGGLRYEDLRVGSGPS----AKKGKRVSVRYIGKLKG-NGKVF-DSNFG--GKPFKLFRLGSGEVIKGWDVGVEGMKVG 189 (226)
T ss_pred cCCCcEEEEEEecCCCC----CCCCCEEEEEEEEEecC-CCeEe-ecccC--CCCccccccCCCCCCchHHHhhhhhccC
Confidence 35789999999999986 58999999999999995 59999 66664 78999 9999999999999999999999
Q ss_pred cEEEEEecCCCccccCCCCCCCCCCceEEEEEEEEee
Q 012290 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380 (466)
Q Consensus 344 E~~~~~i~~~~~yg~~~~~~~ip~~~~l~f~vell~v 380 (466)
.+++|+|||++|||..+.+ .|||+++|+|+|||+.+
T Consensus 190 GkRrviIPp~lgYg~~g~~-~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 190 GKRRVIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV 225 (226)
T ss_pred CeeEEEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence 9999999999999999987 89999999999999987
No 18
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.77 E-value=4e-18 Score=138.09 Aligned_cols=91 Identities=34% Similarity=0.568 Sum_probs=82.4
Q ss_pred CCCCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCcEEEEEecCCCccccCCCC-
Q 012290 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRP- 362 (466)
Q Consensus 284 ~~p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~~yg~~~~~- 362 (466)
++|+.||.|+|||++++.+ |++| ++++. .+.|++|.+|.+.+++||+.+|.+|++||+++|.||++++||+.+..
T Consensus 3 ~~~~~gd~V~i~y~~~~~~--g~~~-~~~~~-~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRLED--GKVF-DSSYQ-EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP 78 (94)
T ss_dssp SSBSTTSEEEEEEEEEETT--SEEE-EETTT-TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred ccCCCCCEEEEEEEEEECC--CcEE-EEeee-cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence 3478999999999999986 9999 44444 47899999999999999999999999999999999999999998874
Q ss_pred CCCCCCceEEEEEEEE
Q 012290 363 ANVPEGAHIQWEIELL 378 (466)
Q Consensus 363 ~~ip~~~~l~f~vell 378 (466)
..||++++|+|+|+|+
T Consensus 79 ~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 PKIPPNSTLVFEIELL 94 (94)
T ss_dssp TTBTTTSEEEEEEEEE
T ss_pred CCcCCCCeEEEEEEEC
Confidence 4799999999999996
No 19
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.76 E-value=1.1e-17 Score=159.34 Aligned_cols=109 Identities=28% Similarity=0.502 Sum_probs=98.2
Q ss_pred CCcceEEEEEeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCc
Q 012290 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344 (466)
Q Consensus 265 ~d~~v~k~il~~G~g~~~~~~p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE 344 (466)
.+.|++++|+++|+|.. |..||.|+|||++++.| |++| ++++. ++.|+.|.++ .++|||+++|.+|++|+
T Consensus 144 t~sGl~y~Vi~~G~G~~----p~~gD~V~V~Y~g~l~d--G~vf-dss~~-~g~p~~f~l~--~vipG~~EaL~~Mk~Ge 213 (269)
T PRK10902 144 TSTGLLYKVEKEGTGEA----PKDSDTVVVNYKGTLID--GKEF-DNSYT-RGEPLSFRLD--GVIPGWTEGLKNIKKGG 213 (269)
T ss_pred CCCccEEEEEeCCCCCC----CCCCCEEEEEEEEEeCC--CCEe-ecccc-CCCceEEecC--CcchHHHHHHhcCCCCc
Confidence 46789999999999975 68999999999999977 9999 66665 5789999986 49999999999999999
Q ss_pred EEEEEecCCCccccCCCCCCCCCCceEEEEEEEEeeecCC
Q 012290 345 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK 384 (466)
Q Consensus 345 ~~~~~i~~~~~yg~~~~~~~ip~~~~l~f~vell~v~~~~ 384 (466)
++.|+||++++||..+.+ .|||+++|+|+|+|++|..+.
T Consensus 214 k~~l~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~~ 252 (269)
T PRK10902 214 KIKLVIPPELAYGKAGVP-GIPANSTLVFDVELLDVKPAP 252 (269)
T ss_pred EEEEEECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccCc
Confidence 999999999999999875 799999999999999998654
No 20
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.61 E-value=3.9e-15 Score=131.09 Aligned_cols=85 Identities=26% Similarity=0.391 Sum_probs=76.5
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcCCcCCcEEEEEEecccccCCCCCCCC
Q 012290 44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA 123 (466)
Q Consensus 44 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~g~~~~ 123 (466)
.++.||.|++||++++.||++|+||+. ++.|+.|.+|.+++++||++||.+|++|++++|.|||+.|||+.
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~----~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~----- 74 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRN----NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP----- 74 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCC----CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC-----
Confidence 478999999999999999999999987 67899999999999999999999999999999999999999964
Q ss_pred CCCCCCCCceeEEEEEEeecc
Q 012290 124 APSTFPKDEELHFEIEMIDFA 144 (466)
Q Consensus 124 ~~~~ip~~~~l~~~v~l~~~~ 144 (466)
+..+++.+....+.
T Consensus 75 -------d~~~v~~vp~~~f~ 88 (156)
T PRK15095 75 -------SPDLIQYFSRRDFM 88 (156)
T ss_pred -------ChHHEEEecHHHCC
Confidence 46677777666653
No 21
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.55 E-value=2.2e-14 Score=126.33 Aligned_cols=71 Identities=21% Similarity=0.312 Sum_probs=64.1
Q ss_pred CCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCcEEEEEecCCCccccCC
Q 012290 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFL 360 (466)
Q Consensus 286 p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~~yg~~~ 360 (466)
.+.++.|++||++++.| |++| +|++. +++|+.|.+|.+++++||+.+|.+|++|+++.|.|||++|||...
T Consensus 5 i~~~~~V~v~Y~~~~~d--G~v~-dst~~-~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 5 VQSNSAVLVHFTLKLDD--GSTA-ESTRN-NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred cCCCCEEEEEEEEEeCC--CCEE-EECCC-CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 47899999999999977 9999 66654 479999999999999999999999999999999999999999643
No 22
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.7e-12 Score=113.77 Aligned_cols=87 Identities=25% Similarity=0.412 Sum_probs=77.0
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcCCcCCcEEEEEEecccccCCCCCCCC
Q 012290 44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA 123 (466)
Q Consensus 44 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~g~~~~ 123 (466)
++++||.|+++|++++.||++||+|.. ...|+.|.+|.+++++||++||.+|.+|++.+|.|||+.|||..
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e----~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~----- 72 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDE----NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY----- 72 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccc----cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC-----
Confidence 378999999999999999999999986 57799999999999999999999999999999999999999964
Q ss_pred CCCCCCCCceeEEEEEEeecccc
Q 012290 124 APSTFPKDEELHFEIEMIDFAKA 146 (466)
Q Consensus 124 ~~~~ip~~~~l~~~v~l~~~~~~ 146 (466)
+..|+-.+.+-.+...
T Consensus 73 -------~~~lvq~vp~~~F~~~ 88 (174)
T COG1047 73 -------DPDLVQRVPRDEFQGV 88 (174)
T ss_pred -------ChHHeEEecHHHhCcC
Confidence 4666676766666553
No 23
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=9.3e-13 Score=115.43 Aligned_cols=70 Identities=26% Similarity=0.372 Sum_probs=63.5
Q ss_pred CCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCcEEEEEecCCCccccCC
Q 012290 287 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFL 360 (466)
Q Consensus 287 ~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~~yg~~~ 360 (466)
..|+.|++||++++.| |++| ||+.. ..+|+.|.+|.+++++|||+||.+|.+|++..|.|||+.|||.+.
T Consensus 4 ~k~~~V~i~Y~~~~~d--g~v~-Dtt~e-~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 4 EKGDVVSLHYTLKVED--GEVV-DTTDE-NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred cCCCEEEEEEEEEecC--CcEE-Ecccc-cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 6799999999999988 9999 55543 268999999999999999999999999999999999999999654
No 24
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.41 E-value=8e-13 Score=119.57 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=62.8
Q ss_pred CCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCcEEEEEecCCCccccCC
Q 012290 287 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFL 360 (466)
Q Consensus 287 ~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~~yg~~~ 360 (466)
.+++.|+++|++++.+ |++| +++.. .+|+.|.+|.++++|+||++|.+|.+|++..|+|||+.|||.+.
T Consensus 4 ~~~~vV~l~Y~l~~~d--G~v~-dst~~--~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 4 AKDLVVSLAYQVRTED--GVLV-DESPV--SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred CCCCEEEEEEEEEeCC--CCEE-EecCC--CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 5789999999999977 9999 55543 68999999999999999999999999999999999999999654
No 25
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.38 E-value=6e-12 Score=113.91 Aligned_cols=84 Identities=23% Similarity=0.293 Sum_probs=74.2
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcCCcCCcEEEEEEecccccCCCCCCCC
Q 012290 44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA 123 (466)
Q Consensus 44 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~g~~~~ 123 (466)
++++++.|+++|+.++.||++|++|+. ..|+.|.+|.+++++||+++|.+|.+|++.+|.|||+.|||..
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-----~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~----- 71 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY----- 71 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-----CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC-----
Confidence 478899999999999999999999974 5699999999999999999999999999999999999999964
Q ss_pred CCCCCCCCceeEEEEEEeecc
Q 012290 124 APSTFPKDEELHFEIEMIDFA 144 (466)
Q Consensus 124 ~~~~ip~~~~l~~~v~l~~~~ 144 (466)
+..+++.|..-.+.
T Consensus 72 -------d~~lV~~vpr~~F~ 85 (196)
T PRK10737 72 -------DENLVQRVPKDVFM 85 (196)
T ss_pred -------ChHHEEEecHHHCC
Confidence 45666666665554
No 26
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.72 E-value=3.4e-08 Score=101.58 Aligned_cols=90 Identities=19% Similarity=0.290 Sum_probs=78.6
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcCCcCCcEEEEEEecccccCCCCCCCC
Q 012290 44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA 123 (466)
Q Consensus 44 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~g~~~~ 123 (466)
.++.||.|+++|+++. ||..|+++. +.++.|.+|.+.+++||+++|.||++|++++|.+++...|+....
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~------~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~--- 215 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGK------AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL--- 215 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCC------CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC---
Confidence 3789999999999975 899888764 358999999999999999999999999999999998888986654
Q ss_pred CCCCCCCCceeEEEEEEeeccccccc
Q 012290 124 APSTFPKDEELHFEIEMIDFAKAKII 149 (466)
Q Consensus 124 ~~~~ip~~~~l~~~v~l~~~~~~~~~ 149 (466)
+|.++.|.|+|.+|.....+
T Consensus 216 ------~gk~~~f~v~i~~I~~~~~p 235 (408)
T TIGR00115 216 ------AGKEATFKVTVKEVKEKELP 235 (408)
T ss_pred ------CCCeEEEEEEEEEeccCCCC
Confidence 58999999999999875433
No 27
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.66 E-value=7.1e-07 Score=91.81 Aligned_cols=87 Identities=14% Similarity=0.249 Sum_probs=75.1
Q ss_pred CCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCcEEEEEecCCCccccCCCCCCC
Q 012290 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV 365 (466)
Q Consensus 286 p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~~yg~~~~~~~i 365 (466)
+..||.|+++|+++. + |+.| ++.. ..++.|.+|.+.+++||+.+|.||++|++..|.++....|+....
T Consensus 147 ~~~gD~V~v~~~~~~-d--g~~~-~~~~---~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~---- 215 (408)
T TIGR00115 147 AEKGDRVTIDFEGFI-D--GEAF-EGGK---AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL---- 215 (408)
T ss_pred cCCCCEEEEEEEEEE-C--CEEC-cCCC---CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC----
Confidence 478999999999976 4 8888 4432 578999999999999999999999999999999998888886554
Q ss_pred CCCceEEEEEEEEeeecCC
Q 012290 366 PEGAHIQWEIELLGFEKPK 384 (466)
Q Consensus 366 p~~~~l~f~vell~v~~~~ 384 (466)
+|.++.|.|+|.+|....
T Consensus 216 -~gk~~~f~v~i~~I~~~~ 233 (408)
T TIGR00115 216 -AGKEATFKVTVKEVKEKE 233 (408)
T ss_pred -CCCeEEEEEEEEEeccCC
Confidence 488999999999998754
No 28
>PRK01490 tig trigger factor; Provisional
Probab=98.63 E-value=9.2e-08 Score=99.16 Aligned_cols=88 Identities=19% Similarity=0.313 Sum_probs=77.4
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcCCcCCcEEEEEEecccccCCCCCCCC
Q 012290 44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA 123 (466)
Q Consensus 44 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~g~~~~ 123 (466)
.++.||.|+++|+++. ||..|+++. +.++.|.+|.+++++||+++|.||++|+++.|.+++...|+...+
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~------~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l--- 226 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGK------AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL--- 226 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCC------CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC---
Confidence 3799999999999997 888888664 357999999999999999999999999999999998888876554
Q ss_pred CCCCCCCCceeEEEEEEeeccccc
Q 012290 124 APSTFPKDEELHFEIEMIDFAKAK 147 (466)
Q Consensus 124 ~~~~ip~~~~l~~~v~l~~~~~~~ 147 (466)
+|.++.|.|+|.++....
T Consensus 227 ------agk~~~f~v~v~~V~~~~ 244 (435)
T PRK01490 227 ------AGKEATFKVTVKEVKEKE 244 (435)
T ss_pred ------CCCeEEEEEEEEEeccCC
Confidence 589999999999998654
No 29
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.5e-07 Score=94.76 Aligned_cols=90 Identities=19% Similarity=0.316 Sum_probs=77.4
Q ss_pred CCCCCEEEEEEEEEEcCCcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcCCcCCcEEEEEEecccccCCCCCCCCC
Q 012290 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (466)
Q Consensus 45 ~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~~yg~~g~~~~~ 124 (466)
++.||.|+|+|.|+ .||..|.+.. ...+.+.||++++|+||+.+|.||++|+...|.+.....|....+
T Consensus 158 a~~gD~v~IDf~g~-iDg~~fegg~------ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L---- 226 (441)
T COG0544 158 AENGDRVTIDFEGS-VDGEEFEGGK------AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL---- 226 (441)
T ss_pred cccCCEEEEEEEEE-EcCeeccCcc------ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh----
Confidence 78999999999996 5998887664 356999999999999999999999999999988887778876665
Q ss_pred CCCCCCCceeEEEEEEeecccccccc
Q 012290 125 PSTFPKDEELHFEIEMIDFAKAKIIA 150 (466)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~~~~~~~~ 150 (466)
+|.+..|.|.|..+.....+.
T Consensus 227 -----aGK~a~F~V~vkeVk~~elpE 247 (441)
T COG0544 227 -----AGKEATFKVKVKEVKKRELPE 247 (441)
T ss_pred -----CCCceEEEEEEEEEeecCCCC
Confidence 689999999999998765443
No 30
>PRK01490 tig trigger factor; Provisional
Probab=98.49 E-value=7.9e-07 Score=92.25 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=74.3
Q ss_pred CCCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCcEEEEEecCCCccccCCCCCCC
Q 012290 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV 365 (466)
Q Consensus 286 p~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~~yg~~~~~~~i 365 (466)
+..||.|+++|.+.. + |+.|+.+. .+++.|.+|.+.+++||+.+|.||++|++..|.++....|+.....
T Consensus 158 ~~~gD~V~vd~~~~~-~--g~~~~~~~----~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~la--- 227 (435)
T PRK01490 158 AENGDRVTIDFVGSI-D--GEEFEGGK----AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLA--- 227 (435)
T ss_pred CCCCCEEEEEEEEEE-C--CEECcCCC----CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCC---
Confidence 478999999999997 4 88884432 5689999999999999999999999999999999988888765543
Q ss_pred CCCceEEEEEEEEeeecC
Q 012290 366 PEGAHIQWEIELLGFEKP 383 (466)
Q Consensus 366 p~~~~l~f~vell~v~~~ 383 (466)
|.++.|.|+|.+|...
T Consensus 228 --gk~~~f~v~v~~V~~~ 243 (435)
T PRK01490 228 --GKEATFKVTVKEVKEK 243 (435)
T ss_pred --CCeEEEEEEEEEeccC
Confidence 7889999999999874
No 31
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=7.9e-06 Score=83.82 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=71.9
Q ss_pred CCCCeEEEEEEEEEecCCCcEEEeecCCCCCCCEEEEeCCCCcchHHHHHHhccCCCcEEEEEecCCCccccCCCCCCCC
Q 012290 287 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVP 366 (466)
Q Consensus 287 ~~g~~V~v~y~~~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~~~~gle~~l~~M~~GE~~~~~i~~~~~yg~~~~~~~ip 366 (466)
..||.|+|+|.|+. +|..|.... .+.+.|.||.+.++|||+.+|.||++|+...|.+.....|......
T Consensus 159 ~~gD~v~IDf~g~i---Dg~~fegg~----ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~La---- 227 (441)
T COG0544 159 ENGDRVTIDFEGSV---DGEEFEGGK----AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELA---- 227 (441)
T ss_pred ccCCEEEEEEEEEE---cCeeccCcc----ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhC----
Confidence 68999999999977 477783333 4679999999999999999999999999999777666666655444
Q ss_pred CCceEEEEEEEEeeecCCC
Q 012290 367 EGAHIQWEIELLGFEKPKD 385 (466)
Q Consensus 367 ~~~~l~f~vell~v~~~~~ 385 (466)
|....|.|+|..|.....
T Consensus 228 -GK~a~F~V~vkeVk~~el 245 (441)
T COG0544 228 -GKEATFKVKVKEVKKREL 245 (441)
T ss_pred -CCceEEEEEEEEEeecCC
Confidence 678999999999988653
No 32
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2e-06 Score=79.18 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=73.9
Q ss_pred eecCCceEEEEEeccCCC-CCCCCCCEEEEEEEEEEcC--CcEEEecccCCCCCCccEEEEcCCCcchhcHHHHhcCCcC
Q 012290 25 KIVPGSLMKAVMRPGGGD-STPSDGDQVAYHCTVRTLD--GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK 101 (466)
Q Consensus 25 ~~~~~gl~~~i~~~G~G~-~~~~~gd~V~v~y~~~~~d--g~~~~st~~~~~~~~~p~~~~lg~~~~~~g~~~~l~~m~~ 101 (466)
.+.-.|+.++|+..|.|+ +-..+|..|.+||.....| ++++|+|+. .|+|+.+.+|...-++-|+..|..|++
T Consensus 6 ~l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk----~gkPmeiiiGkkFkL~VwE~il~tM~v 81 (329)
T KOG0545|consen 6 LLNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK----VGKPMEIIIGKKFKLEVWEIILTTMRV 81 (329)
T ss_pred hccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh----cCCCeEEeeccccccHHHHHHHHHHhh
Confidence 345679999999999998 3368999999999998865 679999998 899999999999999999999999999
Q ss_pred CcEEEEEEec
Q 012290 102 GEVSMFKMKP 111 (466)
Q Consensus 102 Ge~~~~~ip~ 111 (466)
+|.+.|++.-
T Consensus 82 ~EvaqF~~d~ 91 (329)
T KOG0545|consen 82 HEVAQFWCDT 91 (329)
T ss_pred hhHHHhhhhh
Confidence 9999998763
No 33
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.00023 Score=63.92 Aligned_cols=59 Identities=27% Similarity=0.447 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhhhh----cCCCCc
Q 012290 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRLHACSNWE----NAESPS 460 (466)
Q Consensus 392 ee~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~~~~ee~~~~~~~k~~~~lNla----kl~~~~ 460 (466)
+..++.|..+|..||.+|+.|+|..|..+|..||.. +++... +.|.-||+|.| ||.+|.
T Consensus 89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~---cp~~~~-------e~rsIly~Nraaa~iKl~k~e 151 (271)
T KOG4234|consen 89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALES---CPSTST-------EERSILYSNRAAALIKLRKWE 151 (271)
T ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHh---CccccH-------HHHHHHHhhhHHHHHHhhhHH
Confidence 334778999999999999999999999999999865 333332 45677888888 666664
No 34
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.28 E-value=0.0059 Score=66.34 Aligned_cols=64 Identities=22% Similarity=0.286 Sum_probs=53.0
Q ss_pred CCCCCceEEEEEEEEeeecCCCCCCCChhhhHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHh
Q 012290 364 NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDF 428 (466)
Q Consensus 364 ~ip~~~~l~f~vell~v~~~~~~~~~~~ee~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l 428 (466)
..|+...+....++-.+.. ...|.++.+++...+..+|..||.+|+.|+|..|+..|++|+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~ 157 (615)
T TIGR00990 94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK 157 (615)
T ss_pred CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4566666777766665544 556889999999999999999999999999999999999998753
No 35
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0035 Score=61.21 Aligned_cols=72 Identities=25% Similarity=0.356 Sum_probs=57.1
Q ss_pred CChhhhHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCCCCCchH----HHHHHHHHHHHHhhhh----cCCCCc
Q 012290 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----GKVFVGKRLHACSNWE----NAESPS 460 (466)
Q Consensus 389 ~~~ee~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~~~~ee----~~~~~~~k~~~~lNla----kl~~~~ 460 (466)
-+....+..++.+|..||..||.++|..|..+|.|+++|+...+...+.+ ...+...+..+++|+| |++.+.
T Consensus 213 ~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 213 KDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred cccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCC
Confidence 35677788899999999999999999999999999999998633332222 2457889999999988 555544
No 36
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.97 E-value=0.012 Score=57.22 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=35.5
Q ss_pred CChhhhHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHh
Q 012290 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDF 428 (466)
Q Consensus 389 ~~~ee~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l 428 (466)
...++++..+..+|++||.+||.|+|..|+.||.+++..-
T Consensus 88 ~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~ 127 (536)
T KOG4648|consen 88 PIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVY 127 (536)
T ss_pred HHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccC
Confidence 4467888999999999999999999999999999987643
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.015 Score=59.01 Aligned_cols=40 Identities=18% Similarity=0.374 Sum_probs=37.7
Q ss_pred CCChhhhHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 388 ~~~~ee~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
.++.+++++.|..+|.+||.+|+.|+|..|++.|..|+.+
T Consensus 105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l 144 (606)
T KOG0547|consen 105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL 144 (606)
T ss_pred ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999864
No 38
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.03 Score=54.38 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=32.0
Q ss_pred HHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCCC
Q 012290 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 433 (466)
Q Consensus 397 ~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~ 433 (466)
.|...|+.||.+||.++|..|..+|.++|+-=+.++.
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d 116 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD 116 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc
Confidence 7999999999999999999999999999875444333
No 39
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.48 E-value=0.054 Score=52.03 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=34.8
Q ss_pred ChhhhHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHh
Q 012290 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDF 428 (466)
Q Consensus 390 ~~ee~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l 428 (466)
++++-...|..+|..||++++.++|..|+.+|.+|+.+.
T Consensus 73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~ 111 (304)
T KOG0553|consen 73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD 111 (304)
T ss_pred ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 333677889999999999999999999999999999765
No 40
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.38 E-value=0.33 Score=30.13 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=24.7
Q ss_pred HHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 399 ~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
......|..+++.|+|+.|++.|++|+.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999975
No 41
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.18 Score=50.59 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhhhh
Q 012290 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 392 ee~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~~~~ee~~~~~~~k~~~~lNla 454 (466)
-...+.....|.+||.+||.|+|..|..+|..||.+= +. .. +....||.|.|
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id---P~----n~----~~naklY~nra 294 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID---PS----NK----KTNAKLYGNRA 294 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC---cc----cc----chhHHHHHHhH
Confidence 3345667889999999999999999999999998652 11 11 12367888888
No 42
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.44 E-value=0.49 Score=29.50 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=24.6
Q ss_pred HHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 399 ~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
...-..|..++..++|..|+..|++|+.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 34567899999999999999999999975
No 43
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=0.24 Score=51.06 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=35.8
Q ss_pred HHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhhhh
Q 012290 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 398 a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~~~~ee~~~~~~~k~~~~lNla 454 (466)
+..-|.+||++|+.|+|..|++.|.+|+..- .+...+.-=|-.||++|.
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--------PEDARLYSNRAACYLKLG 406 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHh
Confidence 7778999999999999999999999998542 112223333455666665
No 44
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.94 E-value=0.5 Score=30.26 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.6
Q ss_pred HHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 401 IRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 401 ~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
+...|+.+.+.|+|++|+..|++||.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346789999999999999999998854
No 45
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=90.65 E-value=1.2 Score=34.21 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=44.8
Q ss_pred HHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccC-CCCCchHHHHHHHHHHHHHhhhh
Q 012290 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 397 ~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~-~~~~~ee~~~~~~~k~~~~lNla 454 (466)
.|..+=.++..+=+.|+|..|+.+|..|+.+|... ....++..+..-..|+.=|++-|
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RA 63 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRA 63 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 45556667789999999999999999999988653 33445566777777777788777
No 46
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=90.63 E-value=1.5 Score=33.55 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHHhhhh
Q 012290 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 396 ~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~-~~~~~~ee~~~~~~~k~~~~lNla 454 (466)
..|..+=..+...=+.|+|..|..+|..|+.+|.. .....++.++..-..|+.=|++-|
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RA 63 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 45556666778888999999999999999998865 334456677777777888777777
No 47
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=90.01 E-value=1.7 Score=33.19 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHHhhhh
Q 012290 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 395 ~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~-~~~~~~ee~~~~~~~k~~~~lNla 454 (466)
+..|..+=..|...=..|+|+.|..+|..|+.+|.. .....++..+..-..|+.=|++-|
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RA 63 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 345666777888999999999999999999998854 333455566666666666677666
No 48
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=89.79 E-value=2.1 Score=32.46 Aligned_cols=60 Identities=12% Similarity=0.244 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHHhhhh
Q 012290 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 395 ~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~-~~~~~~ee~~~~~~~k~~~~lNla 454 (466)
+..|..+-..|...=+.|+|..|+..|..|+.+|.. .....++..+.....++.-|++.+
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~Ra 63 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 345566666778888999999999999999998865 233344556666667777777777
No 49
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=89.18 E-value=2.1 Score=32.53 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccC-CCCCchHHHHHHHHHHHHHhhhh
Q 012290 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 395 ~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~-~~~~~ee~~~~~~~k~~~~lNla 454 (466)
+..|..+=.+|...=+.|+|..|+..|..|+.+|... ....++..+..-..|..=|++.|
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~Ra 63 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 4567777778889999999999999999999988552 23344555566666666677766
No 50
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.35 E-value=2.7 Score=32.17 Aligned_cols=58 Identities=9% Similarity=0.041 Sum_probs=42.1
Q ss_pred HHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccC--CCCCchHHHHHHHHHHHHHhhhh
Q 012290 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV--NPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 397 ~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~--~~~~~ee~~~~~~~k~~~~lNla 454 (466)
.|..+-.++-.+=+.|+|..|+..|..|+.+|-.. -...++..+..-..|+.=|++-|
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RA 64 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRA 64 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 46666677888899999999999999999988542 22223333444477777788777
No 51
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=87.82 E-value=2 Score=32.02 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHHHhhhh
Q 012290 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 396 ~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~-~~~~ee~~~~~~~k~~~~lNla 454 (466)
..|..+=..+-.+=+.|+|..|+..|..|+.+|.... ...++.....-.-|+.-|++-|
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RA 62 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERA 62 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 4455666677778889999999999999999885421 2234444444444555555444
No 52
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.32 E-value=3.5 Score=31.45 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHHhhhh
Q 012290 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 396 ~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~-~~~~~~ee~~~~~~~k~~~~lNla 454 (466)
+.|...-.+.-++=+.|+|..|+.+|++|...|.. .....|+..+..-..|+.=|.|-+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Ra 63 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRI 63 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 34666667778888999999999999999988865 334455556666677777788877
No 53
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=86.17 E-value=4.8 Score=30.59 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccC-CCCCchHHHHHHHHHHHHHhhhh
Q 012290 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 395 ~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~-~~~~~ee~~~~~~~k~~~~lNla 454 (466)
+..|..+-..|..+=+.|+|+.|+..|..|+.+|... ....++..+.....|..-|++.+
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~ra 65 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRA 65 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 3456666667788888999999999999999988652 23334445555555555556555
No 54
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.02 E-value=1.2 Score=32.77 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 398 a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
|......|+.++..++|..|+..|++|+.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 566788999999999999999999999986
No 55
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=83.48 E-value=5.4 Score=29.96 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=35.8
Q ss_pred HHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhhhh
Q 012290 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 397 ~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~~~~ee~~~~~~~k~~~~lNla 454 (466)
.+......|..++..|+|++|+..|++|+.+...... + ......++.|++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~-----~~~~a~~~~~lg 53 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD---D-----HPDTANTLNNLG 53 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT---H-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC---C-----CHHHHHHHHHHH
Confidence 4566788999999999999999999999998443221 1 112256777777
No 56
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.65 E-value=3.3 Score=25.48 Aligned_cols=29 Identities=28% Similarity=0.238 Sum_probs=24.9
Q ss_pred HHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 399 ~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
...-..|.-+.+.|++..|...|++|+.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34556788899999999999999999875
No 57
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.46 E-value=1.8 Score=45.85 Aligned_cols=62 Identities=16% Similarity=0.099 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhhhhcCCCC
Q 012290 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRLHACSNWENAESP 459 (466)
Q Consensus 396 ~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~~~~ee~~~~~~~k~~~~lNlakl~~~ 459 (466)
-.-..++..+...|+..+|..|++-|.+.++++..+.. +..-.+.+....-|||||.+|.++
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~--~~~FaK~qR~l~~CYL~L~QLD~A 413 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY--SDRFAKIQRALQVCYLKLEQLDNA 413 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh--hhHHHHHHHHHHHHHhhHHHHHHH
Confidence 34456788999999999999999999999998865222 222356666778899999966554
No 58
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.00 E-value=8.3 Score=29.42 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhcc
Q 012290 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (466)
Q Consensus 396 ~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~ 430 (466)
+.|..+=.+|+..=..|+|+.|+..|..|+.++..
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 34555666778888999999999999999998875
No 59
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.16 E-value=4.9 Score=25.80 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=26.3
Q ss_pred HHHHHHHHhHHHhcCChHHHHHHHHHHHHHhcc
Q 012290 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (466)
Q Consensus 398 a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~ 430 (466)
+..+..-|+.++..|+|..|...|++|+.+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 445667899999999999999999999987654
No 60
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=73.08 E-value=11 Score=31.61 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=42.2
Q ss_pred HHHHHhHHHhcCChHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhhhh
Q 012290 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 401 ~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~~~~ee~~~~~~~k~~~~lNla 454 (466)
.--.++..|+.+++-+|+-.|+.|+...+.....++.+...+.-.++.-+-|||
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA 57 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLA 57 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHH
Confidence 345688999999999999999999998877544444555566667777778888
No 61
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.71 E-value=2.3 Score=39.94 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhHHHhcCChHHHHHHHHHHHH
Q 012290 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLR 426 (466)
Q Consensus 396 ~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~ 426 (466)
..+.++|+.||.+|....|..|+.+|.+|+.
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~ 38 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAIC 38 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHh
Confidence 4688999999999999999999999999974
No 62
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.65 E-value=6.4 Score=22.50 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.2
Q ss_pred HHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 401 IRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 401 ~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
....|..++..++|..|...|++++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 446788899999999999999999864
No 63
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=69.40 E-value=9.7 Score=37.12 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHHHhhhh
Q 012290 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN--PQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 394 ~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~--~~~~ee~~~~~~~k~~~~lNla 454 (466)
-+..|..+-.++...-+.++|..|.+.|+-||.|+-..- ..+.+-.+.....|..=||+.|
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRA 68 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRA 68 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHH
Confidence 455666666777788899999999999999999884311 1122223444445555666666
No 64
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=62.61 E-value=16 Score=27.32 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhc
Q 012290 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429 (466)
Q Consensus 396 ~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~ 429 (466)
..+..+-..|+-+...|+|+.|...|++|+.+.+
T Consensus 44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 44 DTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4577788899999999999999999999998753
No 65
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=60.96 E-value=12 Score=24.84 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=22.7
Q ss_pred HHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 402 RVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 402 k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
-..|..+...|+++.|++.|++++..
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34677889999999999999999975
No 66
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=57.63 E-value=9.3 Score=27.44 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=21.6
Q ss_pred HHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 403 VTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 403 ~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
..|..+++.|+|..|.+.|+.+++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~ 26 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ 26 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3688899999999999999998754
No 67
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=56.17 E-value=13 Score=37.40 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=25.5
Q ss_pred HHHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 398 a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
+..++..|+.+|..++|..|+..|++|+..
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~ 31 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDL 31 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345788899999999999999999999864
No 68
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=55.76 E-value=17 Score=36.92 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHh
Q 012290 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDF 428 (466)
Q Consensus 391 ~ee~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l 428 (466)
..+-...|...+..||.+++..+|..|+..|..|+...
T Consensus 42 ~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~ 79 (486)
T KOG0550|consen 42 SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC 79 (486)
T ss_pred cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC
Confidence 45566789999999999999999999999999998753
No 69
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=52.44 E-value=25 Score=33.97 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=33.5
Q ss_pred CCChhhhHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 388 ~~~~ee~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
.++.+..-.....++.+|+..|+.++|..|..-|+-|++-
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~~ 275 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALHS 275 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 3556666666678999999999999999999999999853
No 70
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=52.18 E-value=34 Score=33.04 Aligned_cols=66 Identities=17% Similarity=0.034 Sum_probs=48.1
Q ss_pred CCChhhhHHHHHHHHHHHhHHHhcC-ChHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhhhh
Q 012290 388 GLSFDGIMDEAEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 388 ~~~~ee~~~~a~~~k~~Gn~~~k~~-~~~~A~~~Y~kal~~l~~~~~~~~ee~~~~~~~k~~~~lNla 454 (466)
.++++.....+..+-..|..+++++ +|..|++--++|..+++.. ...+.......++|..++..|+
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~-~~~~~~~~~~~elr~~iL~~La 91 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP-GKMDKLSPDGSELRLSILRLLA 91 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh-hhccccCCcHHHHHHHHHHHHH
Confidence 4567777788999999999999999 9999999999999998652 1111222234445566666555
No 71
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=51.22 E-value=1.1e+02 Score=23.56 Aligned_cols=52 Identities=19% Similarity=0.060 Sum_probs=35.1
Q ss_pred HHHhHHHhcCChHHHHHHHHHHHHHhccC---C---CCCchHHHHHHHHHHHHHhhhh
Q 012290 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHV---N---PQDDEEGKVFVGKRLHACSNWE 454 (466)
Q Consensus 403 ~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~---~---~~~~ee~~~~~~~k~~~~lNla 454 (466)
.+|-.+=-.|.-+.|+..|++|++.|+.- + ....++...+..++.+.-.|+.
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~ 70 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLN 70 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 34444445589999999999999999652 1 2334566666666666666665
No 72
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=50.48 E-value=34 Score=24.33 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=25.5
Q ss_pred HHHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 398 a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
.......|.-++..|++..|...|++++..
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 556778899999999999999999999864
No 73
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.41 E-value=1.1e+02 Score=23.72 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=29.5
Q ss_pred HHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhcc
Q 012290 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (466)
Q Consensus 397 ~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~ 430 (466)
.+...=++|-.+|...+.+.|+.+|++||.-+..
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~ 38 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD 38 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC
Confidence 4667778999999999999999999999976654
No 74
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=47.77 E-value=33 Score=20.41 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=21.8
Q ss_pred HHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 402 RVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 402 k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
-..|.-+++.|++..|+..|++.+.-
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35677888999999999999998764
No 75
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.74 E-value=13 Score=38.39 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=28.6
Q ss_pred HHHHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 397 ~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
.|..+|.++|.+|+.+.|..|+..|.||++.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l 33 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL 33 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhc
Confidence 5778999999999999999999999999874
No 76
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.92 E-value=17 Score=38.02 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=27.2
Q ss_pred HHHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 398 a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
+...|++||..|..|+|..|+..|..|+.+
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l 31 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIML 31 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHcc
Confidence 457899999999999999999999999864
No 77
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=43.35 E-value=73 Score=26.21 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=37.3
Q ss_pred CCCChhhhHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhcc
Q 012290 387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (466)
Q Consensus 387 ~~~~~ee~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~ 430 (466)
+..+....+..|..+...+..+++.|+.+.|.-.|-|.+.+++.
T Consensus 27 ~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~k 70 (115)
T PF08969_consen 27 KNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEK 70 (115)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34567778899999999999999999999999999999988844
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=42.46 E-value=47 Score=35.17 Aligned_cols=37 Identities=22% Similarity=0.138 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCC
Q 012290 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN 432 (466)
Q Consensus 396 ~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~ 432 (466)
..+..++..|+-+...++|..|+..|++||.+++...
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 3455667799999999999999999999999987543
No 79
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.44 E-value=14 Score=37.91 Aligned_cols=48 Identities=23% Similarity=0.229 Sum_probs=35.5
Q ss_pred HHHhHHHhcCChHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhhhh----cCCCCc
Q 012290 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRLHACSNWE----NAESPS 460 (466)
Q Consensus 403 ~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~~~~ee~~~~~~~k~~~~lNla----kl~~~~ 460 (466)
..||-+|+..+|..|++.|+.||.-. ++.+ .+.|+++++|+. ++.+..
T Consensus 242 nigni~~kkr~fskaikfyrmaldqv---psin-------k~~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQV---PSIN-------KDMRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhc---cccc-------hhhHHHHHhhcCeeEEecccch
Confidence 46999999999999999999998643 3332 246777888877 555443
No 80
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=42.31 E-value=87 Score=32.31 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=28.1
Q ss_pred HHHHHhHHHhcCChHHHHHHHHHHHHHhccCCCCCchHHHH
Q 012290 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 441 (466)
Q Consensus 401 ~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~~~~ee~~~ 441 (466)
.-..|-++|+.|+|..|+..++..|..+--..-.+.+|..+
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e 247 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDE 247 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHH
Confidence 33468999999999999999999998764443334444333
No 81
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=40.59 E-value=23 Score=25.39 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=17.8
Q ss_pred HHhcCChHHHHHHHHHHHHH
Q 012290 408 LFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 408 ~~k~~~~~~A~~~Y~kal~~ 427 (466)
+++.|+|..|++.|++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~ 20 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR 20 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHH
Confidence 57899999999999999865
No 82
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=40.18 E-value=34 Score=24.89 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=18.2
Q ss_pred chHHHHhhcCccccEEEEEEccc
Q 012290 209 KGLEMGIGTMTREEKAVIYVTSQ 231 (466)
Q Consensus 209 ~gl~~~l~~M~~Ge~~~i~v~~~ 231 (466)
.-+..|+..|+.||++.++.++.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 34778999999999999999876
No 83
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.28 E-value=81 Score=30.77 Aligned_cols=30 Identities=27% Similarity=0.301 Sum_probs=25.3
Q ss_pred HHHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 398 a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
++..-.-|..++..|+|..|+..|+|||.+
T Consensus 149 skay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 149 SKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 344566789999999999999999999864
No 84
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.27 E-value=40 Score=28.80 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=22.9
Q ss_pred HHHHHHhHHHhcCChHHHHHHHHHHH
Q 012290 400 KIRVTGNRLFKEGKFELAKAKYEKVL 425 (466)
Q Consensus 400 ~~k~~Gn~~~k~~~~~~A~~~Y~kal 425 (466)
..-..|..+++.|++..|+..|++||
T Consensus 120 ~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 34569999999999999999999985
No 85
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=38.26 E-value=57 Score=23.38 Aligned_cols=30 Identities=33% Similarity=0.369 Sum_probs=25.2
Q ss_pred HHHHHHHHhHHHhcC-ChHHHHHHHHHHHHH
Q 012290 398 AEKIRVTGNRLFKEG-KFELAKAKYEKVLRD 427 (466)
Q Consensus 398 a~~~k~~Gn~~~k~~-~~~~A~~~Y~kal~~ 427 (466)
+..+-..|..+++.+ ++..|++.|++|+..
T Consensus 37 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 37 AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 445677888999999 799999999999864
No 86
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=36.75 E-value=69 Score=20.85 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=22.5
Q ss_pred HHHhHHHhcCChHHHHHHHHHHHHHhcc
Q 012290 403 VTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (466)
Q Consensus 403 ~~Gn~~~k~~~~~~A~~~Y~kal~~l~~ 430 (466)
.-|.--.-..+|..|+.=|++||.+...
T Consensus 6 ~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 6 LLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3456667788999999999999987654
No 87
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.88 E-value=37 Score=37.56 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=29.9
Q ss_pred HHHHHHHHhHHHhcCChHHHHHHHHHHHHHhcc
Q 012290 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (466)
Q Consensus 398 a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~ 430 (466)
+.-++.-|+.||++|+|+.|...|.+++.+++.
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 556789999999999999999999999988865
No 88
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=34.33 E-value=1.2e+02 Score=27.26 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=25.8
Q ss_pred HHHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 398 a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
...+...|+-+++.|+++.|.+.|.++..+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~ 65 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDY 65 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 345678999999999999999999998655
No 89
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.37 E-value=1.1e+02 Score=25.69 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=32.7
Q ss_pred CChhhhHHH----HHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCCCCCchHHH
Q 012290 389 LSFDGIMDE----AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK 440 (466)
Q Consensus 389 ~~~ee~~~~----a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~~~~ee~~ 440 (466)
++++|.++. |-.+-.-...+-+.|+|..++..-.+||+|++..-..+.++-+
T Consensus 42 iP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 42 IPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp S-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred CChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence 445555444 2233444556779999999999999999999987766666633
No 90
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=32.16 E-value=95 Score=31.89 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=25.0
Q ss_pred HHHHhHHHhcCChHHHHHHHHHHHHHhcc
Q 012290 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (466)
Q Consensus 402 k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~ 430 (466)
-..+..+|+.++|..|.-+|+-||.+...
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcsk 208 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSK 208 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34778899999999999999999987654
No 91
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=31.64 E-value=64 Score=33.45 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 397 ~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
.+...-..|+.+|+.|+|+.|+..|++|+.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL 104 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL 104 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3555667899999999999999999999875
No 92
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=31.28 E-value=64 Score=23.49 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=18.4
Q ss_pred chHHHHHHhccCCCcEEEEEecCC
Q 012290 330 PEGFEMCVRLMLPGEIALVTCPPD 353 (466)
Q Consensus 330 ~~gle~~l~~M~~GE~~~~~i~~~ 353 (466)
-+.+..|+..|+.||++.++..+.
T Consensus 34 D~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 34 DAELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp -HHHHHHHTT-BTT-EEEEEETTS
T ss_pred CHHHHHHHHHhhcCceeEEEEecC
Confidence 357899999999999999998764
No 93
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=30.60 E-value=83 Score=23.76 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=8.9
Q ss_pred HHhHHHhcCChHHHHHHH
Q 012290 404 TGNRLFKEGKFELAKAKY 421 (466)
Q Consensus 404 ~Gn~~~k~~~~~~A~~~Y 421 (466)
.|.-+|+.|+|.+|+..+
T Consensus 31 la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 444555555555555444
No 94
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=30.01 E-value=78 Score=22.89 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=25.2
Q ss_pred HHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 399 ~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
......|.-+++.|+|..|...+++++..
T Consensus 30 ~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 30 ELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34567899999999999999999999854
No 95
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=29.33 E-value=1.5e+02 Score=18.90 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=19.4
Q ss_pred HHHHHhHHHhcCChHHHHHH--HHHHHH
Q 012290 401 IRVTGNRLFKEGKFELAKAK--YEKVLR 426 (466)
Q Consensus 401 ~k~~Gn~~~k~~~~~~A~~~--Y~kal~ 426 (466)
+..-|-.++..|+|+.|+.. |+-+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45568889999999999999 445543
No 96
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=29.15 E-value=87 Score=30.21 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=25.9
Q ss_pred HHHHHHHHHhHHHhc-CChHHHHHHHHHHHHHhcc
Q 012290 397 EAEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNH 430 (466)
Q Consensus 397 ~a~~~k~~Gn~~~k~-~~~~~A~~~Y~kal~~l~~ 430 (466)
.|..+...|+-+-+. ++++.|+..|++|+.++..
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456667777777777 8999999999999998875
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=25.33 E-value=1.2e+02 Score=27.70 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=26.3
Q ss_pred HHHHHHHhHHHhcCChHHHHHHHHHHHHHhc
Q 012290 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429 (466)
Q Consensus 399 ~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~ 429 (466)
..+-..|..+|+.|+|+.|+..|++++....
T Consensus 145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 145 TALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3456778999999999999999999987644
No 98
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=24.07 E-value=2.2e+02 Score=21.59 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=33.2
Q ss_pred ChhhhHHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhc
Q 012290 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429 (466)
Q Consensus 390 ~~ee~~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~ 429 (466)
..++.++.|......|..++++|++..|..++.=|-..|+
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwLD 66 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWLD 66 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3677889999999999999999999999999877665554
No 99
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.51 E-value=2.1e+02 Score=32.33 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhHHHhcCChHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHH
Q 012290 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRLHA 449 (466)
Q Consensus 395 ~~~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~~~~~ee~~~~~~~k~~~ 449 (466)
+....++-++|=.+++.|+|..|+++++.++-.+--..-.+.++.+++.++..-|
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~ 1042 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKIC 1042 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHH
Confidence 5667778889999999999999999999987544322222334444444444443
No 100
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=22.29 E-value=1.7e+02 Score=25.67 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHHHhcCChHHHHHHHHHHHHH
Q 012290 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (466)
Q Consensus 397 ~a~~~k~~Gn~~~k~~~~~~A~~~Y~kal~~ 427 (466)
.+......|..++..|+|..|+..|++|+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 64 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKL 64 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666643
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=21.90 E-value=1.1e+02 Score=26.05 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=20.4
Q ss_pred HHHHHHHhHHHhcCChHHHHHHHHHHHH
Q 012290 399 EKIRVTGNRLFKEGKFELAKAKYEKVLR 426 (466)
Q Consensus 399 ~~~k~~Gn~~~k~~~~~~A~~~Y~kal~ 426 (466)
......|..+.+.|+|..|+..|++|+.
T Consensus 59 ~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 59 RAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3446677777777888888888888775
No 102
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.13 E-value=1.3e+02 Score=28.85 Aligned_cols=29 Identities=24% Similarity=0.566 Sum_probs=20.7
Q ss_pred HHhHHHhcCChHHHHHHHHHHHHHhccCC
Q 012290 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVN 432 (466)
Q Consensus 404 ~Gn~~~k~~~~~~A~~~Y~kal~~l~~~~ 432 (466)
-|.-+|.+|+|..|...|.++.+-+-..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 57777888888888888888777554433
No 103
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=20.43 E-value=1.3e+02 Score=22.40 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=19.0
Q ss_pred HHHHHHhHHHhcCChHHHHHHHHHH
Q 012290 400 KIRVTGNRLFKEGKFELAKAKYEKV 424 (466)
Q Consensus 400 ~~k~~Gn~~~k~~~~~~A~~~Y~ka 424 (466)
....+.|.+|..|+|..|.+.--.+
T Consensus 8 l~~~~F~~l~~~g~y~eAA~~AA~s 32 (66)
T PF13838_consen 8 LYVQQFNELFSQGQYEEAAKVAANS 32 (66)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3567899999999999998765443
Done!