BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012292
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 2 GIENKFGKTI-CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60
G E G + C +C ED + E ++ + C H+FH+ C+ W E S CPVC+
Sbjct: 7 GTEEHVGSGLECPVCKEDYA-LGESVRQLP-CNHLFHDSCIVPWLEQHDS-----CPVCR 59
Query: 61 QRCSSSNS 68
+ + N+
Sbjct: 60 KSLTGQNT 67
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVC 59
+C++C ED KP D I C H FH CL +W E +K CP+C
Sbjct: 17 LCAVCLEDFKP--RDELGICPCKHAFHRKCLIKWLEV----RK-VCPLC 58
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 36.2 bits (82), Expect = 0.039, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60
C++C +L+ E+ + + CGH FH C+ W TCP+C+
Sbjct: 8 CAVCLAELED-GEEARFLPRCGHGFHAECVDMWL-----GSHSTCPLCR 50
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 35.0 bits (79), Expect = 0.080, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 8 GKTICSICYEDLKPIVED--LQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62
G C IC + IV++ L V + CGHVF CL+ S TCP C+++
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD-----SLKNANTCPTCRKK 60
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 35.0 bits (79), Expect = 0.085, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 8 GKTICSICYEDLKPIVED--LQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62
G C IC + IV++ L V + CGHVF CL+ S TCP C+++
Sbjct: 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD-----SLKNANTCPTCRKK 57
Score = 35.0 bits (79), Expect = 0.085, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 8 GKTICSICYEDLKPIVED--LQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62
G C IC + IV++ L V + CGHVF CL+ S TCP C+++
Sbjct: 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD-----SLKNANTCPTCRKK 122
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 12 CSICYEDLKPIVED--LQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62
C IC + IV++ L V + CGHVF CL+ S TCP C+++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD-----SLKNANTCPTCRKK 53
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 9 KTICSICYEDLKPIVEDLQVISI--CGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66
+T+C +C D E Q++ + C H FH C+ +W + TCP+C+ S
Sbjct: 23 QTLCVVCMCDF----ESRQLLRVLPCNHEFHAKCVDKWLK-----ANRTCPICRADSGPS 73
Query: 67 N 67
+
Sbjct: 74 S 74
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 32.3 bits (72), Expect = 0.56, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60
C IC + + D+ C H FH+ C+ W + K TCPVC+
Sbjct: 43 CPICCSEY--VKGDVATELPCHHYFHKPCVSIWLQ-----KSGTCPVCR 84
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 32.3 bits (72), Expect = 0.60, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 9 KTICSICY---EDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60
+ IC IC+ +D P++ H H+ CLQQW + SS +C C +CK
Sbjct: 15 QDICRICHCEGDDESPLITPCHCTGSL-HFVHQACLQQWIK--SSDTRC-CELCK 65
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 7/49 (14%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60
C+IC L+ ED++ + C H+FH++C+ QW ++KK CP+C+
Sbjct: 17 CTICLSILEE-GEDVRRLP-CMHLFHQVCVDQWL---ITNKK--CPICR 58
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK-------QRCS 64
C IC ED + + C H F +C+ +W + TCP+CK
Sbjct: 8 CPICLED----PSNYSMALPCLHAFCYVCITRWIR-----QNPTCPLCKVPVESVVHTIE 58
Query: 65 SSNSIGDQI 73
S + GDQ+
Sbjct: 59 SDSEFGDQL 67
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 8 GKTICSICYEDLKPIVEDLQVI--SICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62
G C IC + IV++ ++I + CGHVF CL+ + + TCP C+++
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-----TCPTCRKK 65
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Query: 12 CSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVC 59
CS+C E LK P++ + CGH F + C+ +W+E + CPVC
Sbjct: 18 CSVCLEYLKEPVIIE------CGHNFCKACITRWWE--DLERDFPCPVC 58
>pdb|3MYR|A Chain A, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|C Chain C, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|E Chain E, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|G Chain G, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
Length = 269
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 368 NALQREDTSRFSSVVFGLSNHNSIHQTI---ADVVQKPTPSRLGSAPTIDIDEDVTLIVP 424
++ D + S V G SN++ + +T+ A V+ T + G P + + V
Sbjct: 74 GSIPGPDANPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVM 133
Query: 425 DSAQVQPIVNIKKNPPSPVSLS 446
D + +P++N+ PP P+ ++
Sbjct: 134 DLVRDKPVINVPGCPPIPMVIT 155
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIG 70
+CSIC K + D I+ C H F + C+ + F Y + KC V + + S S G
Sbjct: 17 LCSIC----KGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGPSSG 72
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core
pdb|2XA7|A Chain A, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 621
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 16/156 (10%)
Query: 89 PEVSRAE-VKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVS 147
P VS+ E ++ L V +S + +S+ EIK IN+EL + + K + AL + ++ V
Sbjct: 2 PAVSKGEGMRGLAVFISDIRNC-KSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVC 60
Query: 148 VEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGAN 207
+ ++D +E + L N K++ L +S L E+++ L+ N
Sbjct: 61 KLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYL-FISVLVNSNSELIR--LINNAIK 117
Query: 208 NKDTIDVLRKSLVIRNKNYTELMAKC--NLLGREKA 241
N L RN + L C N+ RE A
Sbjct: 118 N---------DLASRNPTFMGLALHCIANVGSREMA 144
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 28.9 bits (63), Expect = 5.7, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 29 ISICGHVFHELCLQQWFEYCSSSKKCT--CPVCK 60
++ C H FH LCL YC+ +K + CP CK
Sbjct: 58 LTKCSHAFHLLCLLAM--YCNGNKDGSLQCPSCK 89
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 164 LECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGA 206
L+ LK+ +++DL +L +++ DLNLD + K LLG G
Sbjct: 295 LDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGT 337
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 164 LECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGA 206
L+ LK+ +++DL +L +++ DLNLD + K LLG G
Sbjct: 295 LDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGT 337
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 164 LECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGA 206
L+ LK+ +++DL +L +++ DLNLD + K LLG G
Sbjct: 294 LDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGT 336
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVC 59
C IC+E + +I C H + LC++++ Y K CP C
Sbjct: 25 CGICFEYFNIAM----IIPQCSHNYCSLCIRKFLSY-----KTQCPTC 63
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 164 LECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGA 206
L+ LK+ +++DL +L +++ DLNLD + K LLG G
Sbjct: 294 LDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGT 336
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.9 bits (63), Expect = 7.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60
+C IC E+ K + I CGH+ CL W E S+ CP C+
Sbjct: 26 LCKICAENDKDVK-----IEPCGHLMCTSCLTSWQE----SEGQGCPFCR 66
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 28.5 bits (62), Expect = 8.2, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60
+C IC E+ K + I CGH+ CL W E S CP C+
Sbjct: 28 LCKICAENDKDVK-----IEPCGHLMCTSCLTAWQE----SDGQGCPFCR 68
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
Query: 12 CSICYEDLKPIVEDLQVISI-CGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61
C IC E ++ +++ C H F C+ +W + +K CP+C++
Sbjct: 56 CIICSEYF------IEAVTLNCAHSFCSYCINEWMK-----RKIECPICRK 95
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 164 LECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNG 205
L+ LK+ +++DL +L +++ DLNLD + K LLG G
Sbjct: 6 LDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAG 47
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|L Chain L, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|A Chain A, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|L Chain L, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 623
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 16/156 (10%)
Query: 89 PEVSRAE-VKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVS 147
P VS+ + ++ L V +S + +S+ EIK IN+EL + + K + AL + ++ V
Sbjct: 2 PAVSKGDGMRGLAVFISDIRNC-KSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVC 60
Query: 148 VEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGAN 207
+ ++D +E + L N K++ L +S L E+++ L+ N
Sbjct: 61 KLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYL-FISVLVNSNSELIR--LINNAIK 117
Query: 208 NKDTIDVLRKSLVIRNKNYTELMAKC--NLLGREKA 241
N L RN + L C N+ RE A
Sbjct: 118 N---------DLASRNPTFMGLALHCIANVGSREMA 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,331,364
Number of Sequences: 62578
Number of extensions: 483222
Number of successful extensions: 1225
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1175
Number of HSP's gapped (non-prelim): 103
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)