BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012292
(466 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61
C ICY+D+ E CGH+F + CLQ+W E CTCP+C++
Sbjct: 106 TCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLE-----NHCTCPLCRK 151
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIGD 71
C++C + + L+++ +C H FH C+ W TCP+C++ S+SN +
Sbjct: 207 CAVCLNEFSD-TDKLRLLPVCSHAFHLHCIDTWLL-----SNSTCPLCRRSLSTSNVCYN 260
Query: 72 QIDLVISQKPKDPEVEDPEVSRAEVKILEVKVSRLHTVLESQGKE 116
+ +++ +V+D + S A+ ++ V++ R + ESQ +
Sbjct: 261 HSETLVAPLSGHQQVDDGKASLAK-RVFSVRLGRFKSTNESQSQR 304
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 23/92 (25%)
Query: 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSI- 69
IC+ICY+D+K VI+ C H FH CL++W + TCP+C +S+ +
Sbjct: 536 ICAICYQDMKS-----AVITPCSHFFHAGCLKKWL-----YVQDTCPLCHCHLKNSSQLP 585
Query: 70 ------------GDQIDLVISQKPKDPEVEDP 89
G + ++V+ + P+ P+ E P
Sbjct: 586 GLGTEAAPQPPAGAEQNIVLQEGPEPPDHESP 617
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIGD 71
C+IC E + V+S+CGH++ CL QW E + ++ CPVCK S +
Sbjct: 27 CNICLETAR-----EAVVSVCGHLYCWPCLHQWLE--TRPERQECPVCKAGISREKVV-- 77
Query: 72 QIDLVISQKPKDPEVEDPEVSRAEVKILEVK 102
+ SQKP+DP ++ P + + E +
Sbjct: 78 PLYGRGSQKPQDPRLKTPPRPQGQRPAPESR 108
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIGD 71
C+IC E + V+S+CGH++ CL QW E + + CPVCK S +
Sbjct: 27 CNICLETAR-----EAVVSVCGHLYCWPCLHQWLE--TRPDRQECPVCKAGISREKVV-- 77
Query: 72 QIDLVISQKPKDPEVEDPEVSRAEVKILEVK 102
+ SQKP+DP ++ P + + E +
Sbjct: 78 PLYGRGSQKPQDPRLKTPPRPQGQRPAPESR 108
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIGD 71
C+IC E + V+S+CGH++ CL QW E + + CPVCK S +
Sbjct: 27 CNICLETAR-----EAVVSVCGHLYCWPCLHQWLE--TRPDRQECPVCKAGISREKVV-- 77
Query: 72 QIDLVISQKPKDPEVEDPEVSRAEVKILEVK 102
+ SQKP+DP ++ P + + E +
Sbjct: 78 PLYGRGSQKPQDPRLKTPPRPQGQRPAPESR 108
>sp|Q9H9V4|RN122_HUMAN RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2
Length = 155
Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66
+G+T C++C ED K ++L V+ C H FH CL +W E +C CP+C + +S
Sbjct: 89 YGQT-CAVCLEDFKG-KDELGVLP-CQHAFHRKCLVKWLEV-----RCVCPMCNKPIASP 140
Query: 67 NSIGDQIDLVISQ 79
+ I +++ +
Sbjct: 141 SEATQNIGILLDE 153
>sp|Q8BP31|RN122_MOUSE RING finger protein 122 OS=Mus musculus GN=Rnf122 PE=2 SV=1
Length = 155
Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 12/75 (16%)
Query: 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS-- 64
+G+T C++C ED K ++L V+ C H FH CL +W E +C CP+C + +
Sbjct: 89 YGQT-CAVCLEDFKG-KDELGVLP-CQHAFHRKCLVKWLEV-----RCVCPMCNKPIAGP 140
Query: 65 --SSNSIGDQIDLVI 77
+S SIG +D ++
Sbjct: 141 TETSQSIGILLDELV 155
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS-SNSIG 70
C+IC +L+ E ++++ IC H+FH C+ W TCPVC+ ++ SN G
Sbjct: 124 CAICLNELEDH-ETVRLLPICNHLFHIDCIDTWLY-----SHATCPVCRSNLTAKSNKPG 177
Query: 71 DQIDLVISQKPKDP---EVEDPEVSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLC 127
D+ D V +D ++E EV+++ + L ++S S G + ++
Sbjct: 178 DEDDGVPLAAMRDHVVVDIETVEVAKSHHRRLSSEISGKFPRSNSTGHSMDRFSDGTERF 237
Query: 128 KERIKEEAALKNEALRQK 145
R+ ++ ++ A++ +
Sbjct: 238 TLRLPDDVKMRLMAVKGR 255
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIG 70
ICSICY+D+ VI+ C H FH CL++W + C C + ++ G
Sbjct: 536 ICSICYQDMNS-----AVITPCSHFFHPGCLKKWLYVQETCPLCHCQLKSLSQQATGESG 590
Query: 71 DQIDLVISQKPKDPEVEDPEVSRAEV 96
+ V Q +P + VSRAEV
Sbjct: 591 SSTNPVSEQSATNPPLGP--VSRAEV 614
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 35/189 (18%)
Query: 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNS-- 68
IC IC + +K I+ CGH++ CL+ W ++ SS CP+CK + + +N+
Sbjct: 1091 ICIICRDIIKQ-----GFITTCGHLYCSFCLEAWLKHSSS-----CPMCKTKLNKNNAYY 1140
Query: 69 IGDQIDLV--------ISQKPKDPEVEDPEVSRAEVKILEVKVSRLHTVLESQGKEIKEI 120
IG+ D+ +++ + E+ D E R ++ +E+K ES G +I I
Sbjct: 1141 IGESRDIYSRQEFVTGFNKRDERLEILDDEAYR-QISNMELK--------ESFGSKIDTI 1191
Query: 121 NEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLA--K 178
++ L K E K Q + V +LH KS E + + K +N L K
Sbjct: 1192 SKHLLYLKH---NELYPKVVVFSQWLDVLDVLH-KSFEANGIVFIRFDGKSKNTCLKRFK 1247
Query: 179 ELASLKLVS 187
E SL++++
Sbjct: 1248 EERSLQVLT 1256
>sp|Q9H920|RN121_HUMAN RING finger protein 121 OS=Homo sapiens GN=RNF121 PE=2 SV=1
Length = 327
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 10/59 (16%)
Query: 10 TICSICYEDL------KPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62
++C++C + + + I+E+ +S C HVFHE C++ W C KK TCP CK++
Sbjct: 224 SVCAVCGQQIFVDVSEEGIIENTYRLS-CNHVFHEFCIRGW---CIVGKKQTCPYCKEK 278
>sp|Q8R1Z9|RN121_MOUSE RING finger protein 121 OS=Mus musculus GN=Rnf121 PE=2 SV=1
Length = 327
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 10/59 (16%)
Query: 10 TICSICYEDL------KPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62
++C++C + + + I+E+ +S C HVFHE C++ W C KK TCP CK++
Sbjct: 224 SVCAVCGQQIFVDVNEEGIIENTYRLS-CNHVFHEFCIRGW---CIVGKKQTCPYCKEK 278
>sp|Q6P360|RN121_XENTR RING finger protein 121 OS=Xenopus tropicalis GN=rnf121 PE=2 SV=1
Length = 327
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 10/59 (16%)
Query: 10 TICSICYEDL------KPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62
++C++C + + + I+E+ +S C HVFHE C++ W C KK TCP CK++
Sbjct: 224 SVCAVCGQQIFVDVNEEGIIENTYRLS-CNHVFHEFCIRGW---CIVGKKQTCPYCKEK 278
>sp|Q6DD32|RN121_XENLA RING finger protein 121 OS=Xenopus laevis GN=rnf121 PE=2 SV=1
Length = 327
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 10/59 (16%)
Query: 10 TICSICYEDL------KPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62
++C++C + + + I+E+ +S C HVFHE C++ W C KK TCP CK++
Sbjct: 224 SVCAVCGQQIFVDVNEEGIIENTYRLS-CNHVFHEFCIRGW---CIVGKKQTCPYCKEK 278
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 12/54 (22%)
Query: 12 CSIC---YEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62
CS+C +ED VE L+++ C H FH C+ QW E + TCP+C+ R
Sbjct: 124 CSVCLSKFED----VEILRLLPKCRHAFHIGCIDQWLE-----QHATCPLCRNR 168
>sp|Q8VIG6|TRAIP_MOUSE TRAF-interacting protein OS=Mus musculus GN=Traip PE=1 SV=2
Length = 470
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60
+ +C+IC D D+ I CGH FH CL QWFE S TCP C+
Sbjct: 4 RALCTIC-SDFFDHSRDVAAIH-CGHTFHLQCLIQWFETAPSR---TCPQCR 50
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60
+ +C+IC D D+ I CGH FH CL QWFE S TCP C+
Sbjct: 4 RALCTIC-SDFFDHSRDVAAIH-CGHTFHLQCLIQWFETAPSR---TCPQCR 50
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 42/149 (28%)
Query: 8 GKTICSIC---YEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK---- 60
G+ C+IC +ED E L+++ C HVFH C+ W E TCPVC+
Sbjct: 124 GELECAICLNEFED----DETLRLLPKCDHVFHPHCIDAWLE-----AHVTCPVCRANLA 174
Query: 61 QRCSSSNSI---GDQIDLVISQKPKDP---------------EVEDPEVSRAEVKILEVK 102
++ + S+ G + DL + Q +P EV+ + V + VK
Sbjct: 175 EQVAEGESVEPGGTEPDLELQQVVVNPEPVVTAPVPEQLVTSEVDSRRLPGVPVDLKRVK 234
Query: 103 VSRLHTVLESQGKEIKEINEELCLCKERI 131
SR HT G + + E C ER
Sbjct: 235 FSRSHTT----GHSVVQPGE----CTERF 255
>sp|Q3UWA4|TRI40_MOUSE Tripartite motif-containing protein 40 OS=Mus musculus GN=Trim40
PE=2 SV=1
Length = 246
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 1 MGIENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60
MG +K + IC IC + LK V + C H+F +CL Q + S S +CPVC+
Sbjct: 1 MGSLDKDNQDICPICLDPLKEAVS-----TDCRHLFCRMCLTQHMDKASVSGILSCPVCR 55
Query: 61 QRCSSSNSIGD 71
+ C S +GD
Sbjct: 56 KPC-SEGVLGD 65
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 4 ENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61
E+K+G C+IC + + L++++ C HVFH+ C+ QW E S+K TCPVC++
Sbjct: 107 EDKYGLE-CAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLE---SNK--TCPVCRR 158
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIGD 71
C++C E KP DL I C HVFH+ C+ W + TCP+CK C ++G
Sbjct: 280 CAVCIELYKP--NDLVRILTCNHVFHKTCVDPWL-----LEHRTCPMCK--CDILKALGI 330
Query: 72 QIDL 75
++D+
Sbjct: 331 EVDV 334
>sp|Q6P9F5|TRI40_HUMAN Tripartite motif-containing protein 40 OS=Homo sapiens GN=TRIM40
PE=1 SV=3
Length = 258
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64
+C IC E LK V + CGH+F +CL Q E S+S CP+C++ CS
Sbjct: 13 VCPICQESLKEAVS-----TNCGHLFCRVCLTQHVEKASASGVFCCPLCRKPCS 61
>sp|Q8N4F7|RN175_HUMAN RING finger protein 175 OS=Homo sapiens GN=RNF175 PE=2 SV=2
Length = 328
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 10/58 (17%)
Query: 11 ICSICYE------DLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62
IC++C + D + ++E+ +S C HVFHE C++ W C KK TCP CK++
Sbjct: 226 ICAVCGQKIIVELDEEGLIENTYQLS-CNHVFHEFCIRGW---CIVGKKQTCPYCKEK 279
>sp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B
PE=2 SV=1
Length = 157
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 12 CSICYEDLKPIVED-LQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62
C++C D + +D ++ + CGHVFH CL +W C+ K TCP+C+ R
Sbjct: 85 CTVCLSDF--VSDDKIRQLPKCGHVFHHRCLDRWIVDCN---KITCPICRNR 131
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIGD 71
C++C E KP DL I C H+FH+ C+ W + TCP+CK C ++G
Sbjct: 277 CAVCIELYKP--NDLVRILTCNHIFHKTCVDPWL-----LEHRTCPMCK--CDILKALGI 327
Query: 72 QIDL 75
++D+
Sbjct: 328 EVDV 331
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIGD 71
C++C E KP DL I C H+FH+ C+ W + TCP+CK C ++G
Sbjct: 277 CAVCIELYKP--NDLVRILTCNHIFHKTCVDPWL-----LEHRTCPMCK--CDILKALGI 327
Query: 72 QIDL 75
++D+
Sbjct: 328 EVDV 331
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIGD 71
C++C E KP DL I C H+FH+ C+ W + TCP+CK C ++G
Sbjct: 277 CAVCIELYKP--NDLVRILTCNHIFHKTCVDPWL-----LEHRTCPMCK--CDILKALGI 327
Query: 72 QIDL 75
++D+
Sbjct: 328 EVDV 331
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIGD 71
CS+C D +P + LQ I +C H FH C+ W + TCP+C+ S S
Sbjct: 100 CSVCLGDYQP-NDKLQQIPVCKHTFHMDCIDLWL-----TSHTTCPLCRLALIPSRSRQS 153
Query: 72 QIDLVISQKPKDPEV 86
Q D V S D EV
Sbjct: 154 QDDPVPSLVSPDEEV 168
>sp|Q1XHT8|TRI40_PANTR Tripartite motif-containing protein 40 OS=Pan troglodytes
GN=TRIM40 PE=3 SV=1
Length = 229
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64
+C IC E LK V + CGH+F +CL Q E S+S CP+C++ CS
Sbjct: 13 VCPICQESLKEAVS-----TNCGHLFCRVCLTQHVEKASASGVFCCPLCRKPCS 61
>sp|Q94071|LIPB_CAEEL Liprin-beta OS=Caenorhabditis elegans GN=T21H8.1 PE=2 SV=4
Length = 920
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 29/193 (15%)
Query: 91 VSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKE---EAALKNEALRQKVS 147
VS E L+ K+ RL +S ++ ++E++ KE+IK+ ALK L S
Sbjct: 167 VSCPEYPELQDKLHRLAMARDSLQLQVSVLSEQVGAQKEKIKDLETVIALKRNNL---TS 223
Query: 148 VEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKL-VSDLNLDEDEVLKFALLGNGA 206
E+LL K +D EC +L+ + MDL E++SLKL + L +++E K L
Sbjct: 224 TEELLQDKYHRID----ECQELESKKMDLLAEVSSLKLRYATLEREKNETEKKLRLSQ-- 277
Query: 207 NNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKL-----EKAKEKINKLKTRV 261
N D ++ +V++ +L N G + L EK +++++L+T V
Sbjct: 278 NEMDHVNQSMHGMVVQQ----QLAHHTN--GHSSGGYMSPLREHRSEKNDDEMSQLRTAV 331
Query: 262 QELETAVELKDNE 274
Q L + DNE
Sbjct: 332 QRL-----MADNE 339
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 15/142 (10%)
Query: 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIGD 71
C++C E KP D+ I C H FH+ C+ W + TCP+CK C S+G
Sbjct: 260 CAVCIEPYKP--SDVVRILTCNHFFHKNCIDPWL-----LEHRTCPMCK--CDILKSLGI 310
Query: 72 QIDLVISQKPKDPEVEDPEVSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERI 131
D P V E+ R+ V+I E H+ S G +E + I
Sbjct: 311 AEDEEEGTSVAIPSVSS-ELQRSTVQITE---EENHSETASSGYASVRGGDEQVDEGQHI 366
Query: 132 KEEAALKNEALRQKVSVEQLLH 153
E L +EA S+E L H
Sbjct: 367 YENTELVHEA--SATSIEVLPH 386
>sp|Q6MFZ5|TRI39_RAT E3 ubiquitin-protein ligase TRIM39 OS=Rattus norvegicus GN=Trim39
PE=2 SV=1
Length = 488
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 3 IENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61
+EN + CS+C E LK VI CGH F + C+ +W+E + CPVC++
Sbjct: 20 LENLQVEASCSVCLEYLKE-----PVIIECGHNFCKACITRWWE--DLERDFPCPVCRK 71
>sp|Q2M243|CCD27_HUMAN Coiled-coil domain-containing protein 27 OS=Homo sapiens GN=CCDC27
PE=2 SV=2
Length = 656
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 15/141 (10%)
Query: 223 NKNYTELMA---KCNLLGREK-ARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRA 278
+K + E+M K N L R++ + KL K I++L T+V +L+ VEL N + R
Sbjct: 491 DKKHQEMMGLIEKDNQLLRQQVSELERKLTKRDCVISELDTKVSQLQEQVELDQNHLQRW 550
Query: 279 LKVSKKASQKEEILKGATEDNSISLCTNNVSLEDQREQHSVPIYNLDWTSRVTNDFS--- 335
++ + K+E+++ A + ++L ++ LE R + +++ T + N+ S
Sbjct: 551 KQLQEDLQSKKEMIQQAEQHTRVALESSQSRLERLRNKIIQATFSISGTKSLANEISDND 610
Query: 336 --------FSTKSENFNAIKN 348
S +S+ +N +K
Sbjct: 611 ILEALQRIISERSDYYNQLKQ 631
>sp|E9Q557|DESP_MOUSE Desmoplakin OS=Mus musculus GN=Dsp PE=3 SV=1
Length = 2883
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 109 VLESQGKEIKEINEEL--------CLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELD 160
VL+ +E + EEL L ++ ++E+ +K LR + ++ + KS+ L+
Sbjct: 1651 VLDGHVREKQRTQEELRRLSLDVEALRRQLVQEQENVKQAHLRNE-HFQKAIEDKSRSLN 1709
Query: 161 KVTLECLKLKQRNMDLAKELASLKL-VSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSL 219
+ +E +L+ +L KE L+ + +L L+ D++ + + N TI LR L
Sbjct: 1710 ESKIEIERLQSLTENLTKEHLMLEEELRNLRLEYDDLRRGRSEADSDKN-STISELRSQL 1768
Query: 220 VIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQE 263
I N EL N L RE+ +++EK +++ + R+QE
Sbjct: 1769 QISNNRTLELQGLINDLQRERENLRQEIEKFQKQALEASNRIQE 1812
>sp|P15924|DESP_HUMAN Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3
Length = 2871
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 109 VLESQGKEIKEINEEL--------CLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELD 160
VL+ +E + EEL L ++ ++E+ ++K LR + ++ + KS+ L+
Sbjct: 1639 VLDGHLREKQRTQEELRRLSSEVEALRRQLLQEQESVKQAHLRNE-HFQKAIEDKSRSLN 1697
Query: 161 KVTLECLKLKQRNMDLAKELASLKL-VSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSL 219
+ +E +L+ +L KE L+ + +L L+ D++ + + N TI LR L
Sbjct: 1698 ESKIEIERLQSLTENLTKEHLMLEEELRNLRLEYDDLRRGRSEADSDKNA-TILELRSQL 1756
Query: 220 VIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQE 263
I N EL N L RE+ +++EK +++ + R+QE
Sbjct: 1757 QISNNRTLELQGLINDLQRERENLRQEIEKFQKQALEASNRIQE 1800
>sp|Q554L2|Y4613_DICDI Probable inactive serine/threonine-protein kinase DDB_G0274613
OS=Dictyostelium discoideum GN=DDB_G0274613 PE=3 SV=1
Length = 831
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 56/270 (20%)
Query: 12 CSICYE---DLKPIVEDLQVIS--ICGHVFHELCLQQWFEYCSSSKKCTC-PVCKQRCSS 65
CSIC E D I + C H F CL EY + +KK C P+C++
Sbjct: 9 CSICSEEVIDFAAIFSSNKKFGDKACKHNFCVSCLTYLMEYNTRNKKALCCPICRE---- 64
Query: 66 SNSIGDQIDLVISQKPKDPEVEDPEVSRAEVKILEVKVSRLHTVLESQGKEIKEINEELC 125
+ D I K ++ K+S L+++ ++ NEE+
Sbjct: 65 ------EFDGFIQNKTSSDLLKQAR-----------KLSSAQIFLKNENSKL---NEEIN 104
Query: 126 LCK-ERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184
L K ER +NEA++ + ++QL SKS+++ + T +K R ++ E+ SL+
Sbjct: 105 LIKNER-------ENEAIQYRDRIKQLEDSKSKQVQEST----NIKSRIKEMENEIQSLE 153
Query: 185 LVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFS 244
L+L NN+ D ++ ++ ++Y E + N +
Sbjct: 154 QARLLDLQ--------------NNQSKFDTQQQQILTLTQSYRESQSNYNDSNLRANELN 199
Query: 245 EKLEKAKEKINKLKTRVQELETAVELKDNE 274
+++K +I K Q+ + ++ D+E
Sbjct: 200 NQIQKLYREIEGFKQHAQQQDNYIKDIDSE 229
>sp|P70194|CLC4F_MOUSE C-type lectin domain family 4 member F OS=Mus musculus GN=Clec4f
PE=1 SV=1
Length = 548
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 114/255 (44%), Gaps = 34/255 (13%)
Query: 76 VISQKPKDPEVEDPEVSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEA 135
V Q+ +D E E+ EV+IL+ ++ + ++++ G ++++N ++ K+ +KE
Sbjct: 104 VAIQRLRDYE-ENSSSCHKEVQILKYQMDNVSSLVQLLGSHLEDVNADILQTKDVLKESG 162
Query: 136 --ALKNEALRQKVSVEQL-LHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLD 192
AL+ +ALR + V +HS +L+K N ++ LK +
Sbjct: 163 ALALETQALRSSLEVASADIHSLRGDLEKA----------NAMTSQTRGLLKSST----- 207
Query: 193 EDEVLKFALLGNGANNKDT-IDVLRKSLVIRNKNYTE----LMAKCNLLGREKARFSEKL 247
E+ + +LG G + I LR SL N ++ L + + + + +
Sbjct: 208 ENTSAELHVLGRGLEEAQSEIQALRGSLQSANDLSSQTQGFLQHSMDNISAQIQTVRDGM 267
Query: 248 EKAKEKINKLK-------TRVQELETAVELKDNEV--LRA-LKVSKKASQKEEILKGATE 297
E+A EK+N LK + Q+ +E D ++ L+A LK + + + E++ G +
Sbjct: 268 ERAGEKMNSLKKELETLTAQTQKANGHLEQTDAQIQGLKAELKSTSSLNSRIEVVNGQMK 327
Query: 298 DNSISLCTNNVSLED 312
D S L T L D
Sbjct: 328 DASRELQTLRRDLSD 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,520,773
Number of Sequences: 539616
Number of extensions: 6768819
Number of successful extensions: 29789
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 1561
Number of HSP's that attempted gapping in prelim test: 26428
Number of HSP's gapped (non-prelim): 4082
length of query: 466
length of database: 191,569,459
effective HSP length: 121
effective length of query: 345
effective length of database: 126,275,923
effective search space: 43565193435
effective search space used: 43565193435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)