Query 012292
Match_columns 466
No_of_seqs 254 out of 1736
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 01:05:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0827 Predicted E3 ubiquitin 99.9 1.5E-21 3.3E-26 195.6 17.1 297 9-331 4-301 (465)
2 KOG0804 Cytoplasmic Zn-finger 99.5 5.3E-13 1.1E-17 137.0 16.7 56 2-65 168-223 (493)
3 PF15227 zf-C3HC4_4: zinc fing 99.1 1.9E-11 4E-16 88.1 2.7 41 12-59 1-42 (42)
4 PF13639 zf-RING_2: Ring finge 99.1 1.9E-11 4.2E-16 88.5 2.2 43 11-60 2-44 (44)
5 PLN03208 E3 ubiquitin-protein 99.0 1.5E-10 3.2E-15 108.8 4.6 55 7-67 16-82 (193)
6 KOG0317 Predicted E3 ubiquitin 99.0 2.8E-10 6.1E-15 111.8 3.7 52 5-67 235-287 (293)
7 PF13923 zf-C3HC4_2: Zinc fing 98.9 5.6E-10 1.2E-14 78.9 3.0 38 12-59 1-39 (39)
8 KOG0320 Predicted E3 ubiquitin 98.9 7.6E-10 1.6E-14 101.9 3.4 54 6-67 128-181 (187)
9 PHA02929 N1R/p28-like protein; 98.9 1.1E-09 2.3E-14 107.0 4.4 54 7-65 172-228 (238)
10 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.2E-09 2.6E-14 81.3 3.7 46 9-64 2-48 (50)
11 KOG0823 Predicted E3 ubiquitin 98.9 1E-09 2.2E-14 105.0 3.4 54 6-67 44-98 (230)
12 smart00504 Ubox Modified RING 98.9 1.5E-09 3.3E-14 83.9 3.7 48 9-67 1-49 (63)
13 TIGR00570 cdk7 CDK-activating 98.9 1.9E-07 4.2E-12 93.9 19.4 54 8-67 2-57 (309)
14 PHA02926 zinc finger-like prot 98.8 2.8E-09 6E-14 101.5 4.0 59 7-65 168-231 (242)
15 TIGR00599 rad18 DNA repair pro 98.8 2.9E-09 6.2E-14 110.9 3.2 50 6-66 23-73 (397)
16 PF00097 zf-C3HC4: Zinc finger 98.8 5.3E-09 1.2E-13 74.3 3.3 41 12-59 1-41 (41)
17 PF12678 zf-rbx1: RING-H2 zinc 98.8 6.3E-09 1.4E-13 83.8 4.1 46 10-60 20-73 (73)
18 cd00162 RING RING-finger (Real 98.7 6.9E-09 1.5E-13 73.6 3.4 44 11-63 1-45 (45)
19 KOG0287 Postreplication repair 98.7 4.1E-09 8.9E-14 105.2 1.1 48 9-67 23-71 (442)
20 PF13445 zf-RING_UBOX: RING-ty 98.7 1.3E-08 2.7E-13 73.7 3.2 43 12-57 1-43 (43)
21 KOG2164 Predicted E3 ubiquitin 98.7 9.1E-09 2E-13 108.1 3.2 53 9-67 186-239 (513)
22 PF14634 zf-RING_5: zinc-RING 98.7 1.3E-08 2.8E-13 73.8 2.9 44 11-61 1-44 (44)
23 COG5243 HRD1 HRD ubiquitin lig 98.6 1.9E-08 4E-13 101.7 3.4 53 7-64 285-345 (491)
24 KOG4628 Predicted E3 ubiquitin 98.6 2.3E-08 5E-13 101.9 3.7 52 10-67 230-281 (348)
25 COG5432 RAD18 RING-finger-cont 98.5 3.5E-08 7.6E-13 96.9 1.8 47 9-66 25-72 (391)
26 COG5540 RING-finger-containing 98.5 5.8E-08 1.3E-12 96.0 3.3 52 8-65 322-373 (374)
27 smart00184 RING Ring finger. E 98.5 1E-07 2.2E-12 65.2 3.6 39 12-59 1-39 (39)
28 KOG2177 Predicted E3 ubiquitin 98.5 4.5E-08 9.7E-13 95.4 1.2 46 6-61 10-55 (386)
29 COG5574 PEX10 RING-finger-cont 98.5 9.2E-08 2E-12 93.3 3.0 51 7-67 213-265 (271)
30 PF04564 U-box: U-box domain; 98.4 9.8E-08 2.1E-12 76.8 2.6 50 8-67 3-53 (73)
31 PF12861 zf-Apc11: Anaphase-pr 98.4 2.5E-07 5.4E-12 76.1 3.9 55 8-64 20-82 (85)
32 KOG0978 E3 ubiquitin ligase in 98.3 2.4E-07 5.3E-12 101.6 1.6 51 8-67 642-692 (698)
33 PF14835 zf-RING_6: zf-RING of 98.3 2E-07 4.2E-12 72.5 0.1 47 9-67 7-54 (65)
34 KOG0802 E3 ubiquitin ligase [P 98.2 6.2E-07 1.3E-11 98.0 2.4 52 8-64 290-341 (543)
35 KOG0311 Predicted E3 ubiquitin 97.9 1.2E-06 2.5E-11 88.7 -1.5 55 5-67 39-93 (381)
36 KOG4739 Uncharacterized protei 97.9 0.00021 4.7E-09 69.4 13.0 50 8-67 2-51 (233)
37 KOG0824 Predicted E3 ubiquitin 97.9 6E-06 1.3E-10 82.0 2.4 50 7-66 5-55 (324)
38 KOG1734 Predicted RING-contain 97.8 6.5E-06 1.4E-10 80.5 1.1 61 4-67 219-284 (328)
39 KOG0828 Predicted E3 ubiquitin 97.8 9.3E-06 2E-10 85.1 1.7 53 9-65 571-635 (636)
40 PF11793 FANCL_C: FANCL C-term 97.7 1.1E-05 2.3E-10 64.6 1.1 57 9-65 2-67 (70)
41 KOG1645 RING-finger-containing 97.7 8.5E-05 1.9E-09 76.6 7.5 56 8-66 3-58 (463)
42 COG5194 APC11 Component of SCF 97.6 4.5E-05 9.8E-10 61.6 3.2 51 11-66 33-83 (88)
43 KOG4159 Predicted E3 ubiquitin 97.5 4.7E-05 1E-09 79.7 2.5 50 6-66 81-131 (398)
44 COG5219 Uncharacterized conser 97.5 3.5E-05 7.5E-10 85.9 1.1 55 7-64 1467-1523(1525)
45 KOG2879 Predicted E3 ubiquitin 97.5 8.2E-05 1.8E-09 73.2 3.4 50 7-64 237-287 (298)
46 KOG2660 Locus-specific chromos 97.4 3.8E-05 8.2E-10 77.4 0.6 53 6-67 12-64 (331)
47 KOG1039 Predicted E3 ubiquitin 97.4 7.1E-05 1.5E-09 77.0 2.2 60 7-66 159-223 (344)
48 PF11789 zf-Nse: Zinc-finger o 97.4 9E-05 2E-09 56.9 2.2 47 4-58 6-53 (57)
49 KOG4172 Predicted E3 ubiquitin 97.3 8.2E-05 1.8E-09 55.9 1.0 47 9-64 7-54 (62)
50 KOG1493 Anaphase-promoting com 97.3 6.8E-05 1.5E-09 60.1 0.3 53 10-64 21-81 (84)
51 smart00744 RINGv The RING-vari 97.3 0.00026 5.6E-09 52.7 3.3 44 11-60 1-49 (49)
52 COG5152 Uncharacterized conser 97.2 0.0001 2.2E-09 69.3 1.1 46 9-65 196-242 (259)
53 KOG1002 Nucleotide excision re 97.2 0.00047 1E-08 73.1 5.5 58 4-66 531-588 (791)
54 PRK02224 chromosome segregatio 97.2 0.11 2.3E-06 60.2 25.0 15 53-67 451-465 (880)
55 KOG0825 PHD Zn-finger protein 97.0 0.00018 3.8E-09 79.2 0.5 56 5-67 119-174 (1134)
56 KOG0297 TNF receptor-associate 96.9 0.00045 9.8E-09 72.7 2.1 52 6-67 18-70 (391)
57 KOG1785 Tyrosine kinase negati 96.9 0.00042 9E-09 71.3 1.6 50 10-67 370-419 (563)
58 TIGR02169 SMC_prok_A chromosom 96.9 0.26 5.7E-06 58.2 25.1 46 225-270 442-487 (1164)
59 TIGR00606 rad50 rad50. This fa 96.8 0.24 5.2E-06 60.1 24.7 32 36-67 660-691 (1311)
60 PF09726 Macoilin: Transmembra 96.7 0.2 4.3E-06 56.6 21.5 19 245-263 636-654 (697)
61 PRK11637 AmiB activator; Provi 96.7 1.1 2.3E-05 47.8 25.9 73 92-164 45-117 (428)
62 TIGR02169 SMC_prok_A chromosom 96.7 0.48 1E-05 56.0 25.4 11 421-431 624-634 (1164)
63 KOG0250 DNA repair protein RAD 96.7 0.38 8.3E-06 55.8 23.1 75 110-184 283-357 (1074)
64 PF04641 Rtf2: Rtf2 RING-finge 96.7 0.0016 3.5E-08 64.9 3.9 55 6-67 110-164 (260)
65 KOG1813 Predicted E3 ubiquitin 96.6 0.00059 1.3E-08 67.9 0.7 46 10-66 242-288 (313)
66 KOG4185 Predicted E3 ubiquitin 96.6 0.0012 2.6E-08 66.6 2.6 52 9-64 3-55 (296)
67 TIGR02168 SMC_prok_B chromosom 96.5 0.6 1.3E-05 55.0 25.0 33 92-124 675-707 (1179)
68 KOG2930 SCF ubiquitin ligase, 96.5 0.0015 3.2E-08 55.5 1.9 30 29-63 78-107 (114)
69 KOG1941 Acetylcholine receptor 96.5 0.0011 2.4E-08 68.2 1.2 51 8-62 364-414 (518)
70 KOG4265 Predicted E3 ubiquitin 96.4 0.0022 4.7E-08 65.6 3.2 49 7-65 288-337 (349)
71 PF15619 Lebercilin: Ciliary p 96.4 0.94 2E-05 43.4 21.8 37 238-274 157-193 (194)
72 TIGR02168 SMC_prok_B chromosom 96.4 0.85 1.8E-05 53.7 25.2 27 91-117 681-707 (1179)
73 KOG4445 Uncharacterized conser 96.2 0.0019 4.1E-08 64.5 1.1 62 3-66 109-188 (368)
74 PRK11637 AmiB activator; Provi 96.1 2 4.3E-05 45.8 23.9 79 88-166 48-126 (428)
75 KOG4692 Predicted E3 ubiquitin 96.1 0.0033 7.2E-08 64.0 2.6 50 6-65 419-468 (489)
76 KOG0827 Predicted E3 ubiquitin 96.1 0.43 9.4E-06 49.6 17.6 139 130-283 153-296 (465)
77 COG5222 Uncharacterized conser 96.0 0.0039 8.5E-08 62.2 2.6 43 10-61 275-318 (427)
78 PRK04778 septation ring format 96.0 1.9 4.2E-05 47.7 23.8 63 110-172 277-339 (569)
79 KOG1814 Predicted E3 ubiquitin 96.0 0.0032 6.9E-08 65.4 1.9 51 10-62 185-238 (445)
80 PF14447 Prok-RING_4: Prokaryo 96.0 0.003 6.4E-08 47.9 1.1 32 28-66 21-52 (55)
81 KOG3800 Predicted E3 ubiquitin 95.9 0.063 1.4E-06 53.7 10.5 51 11-67 2-54 (300)
82 KOG0996 Structural maintenance 95.9 1.1 2.4E-05 52.5 21.6 77 208-284 519-611 (1293)
83 KOG0995 Centromere-associated 95.9 1.7 3.7E-05 47.5 21.6 53 230-282 338-393 (581)
84 PHA03096 p28-like protein; Pro 95.9 0.0045 9.8E-08 62.4 2.3 51 10-62 179-232 (284)
85 KOG0250 DNA repair protein RAD 95.8 3.1 6.8E-05 48.6 24.6 10 317-326 492-501 (1074)
86 COG1196 Smc Chromosome segrega 95.7 2.5 5.4E-05 50.8 24.7 54 216-269 827-880 (1163)
87 PF14570 zf-RING_4: RING/Ubox 95.7 0.0079 1.7E-07 44.5 2.4 47 12-63 1-47 (48)
88 KOG3039 Uncharacterized conser 95.5 0.01 2.3E-07 57.8 3.2 54 8-67 220-273 (303)
89 KOG3002 Zn finger protein [Gen 95.5 0.0074 1.6E-07 61.3 2.2 46 6-65 45-92 (299)
90 TIGR00606 rad50 rad50. This fa 95.4 2.4 5.2E-05 51.6 23.5 12 9-20 677-688 (1311)
91 KOG0996 Structural maintenance 95.4 2.2 4.7E-05 50.2 21.3 53 222-274 512-564 (1293)
92 PF07800 DUF1644: Protein of u 95.2 0.032 6.9E-07 51.2 5.1 77 8-85 1-111 (162)
93 COG1196 Smc Chromosome segrega 95.2 5.1 0.00011 48.2 25.0 63 210-272 842-904 (1163)
94 PF08317 Spc7: Spc7 kinetochor 95.1 4.7 0.0001 41.5 25.7 81 206-286 205-288 (325)
95 KOG0964 Structural maintenance 95.1 4.8 0.0001 46.7 22.5 63 208-270 409-471 (1200)
96 COG5220 TFB3 Cdk activating ki 95.1 1.1 2.3E-05 44.0 15.1 54 5-64 6-64 (314)
97 COG1579 Zn-ribbon protein, pos 95.0 4.2 9.2E-05 40.2 22.1 26 145-170 54-79 (239)
98 PF13851 GAS: Growth-arrest sp 94.9 3.7 8.1E-05 39.4 21.9 85 212-296 95-188 (201)
99 PHA02825 LAP/PHD finger-like p 94.9 0.03 6.6E-07 51.4 4.0 54 4-66 3-61 (162)
100 KOG1001 Helicase-like transcri 94.8 0.012 2.6E-07 66.0 1.5 49 10-67 455-503 (674)
101 COG5175 MOT2 Transcriptional r 94.8 0.02 4.3E-07 58.2 2.8 55 8-67 13-67 (480)
102 PRK01156 chromosome segregatio 94.7 8.1 0.00017 45.0 24.4 12 53-64 452-463 (895)
103 PF10367 Vps39_2: Vacuolar sor 94.7 0.012 2.6E-07 49.9 0.8 32 8-42 77-108 (109)
104 PF02891 zf-MIZ: MIZ/SP-RING z 94.7 0.012 2.6E-07 44.0 0.7 48 9-62 2-50 (50)
105 PF09726 Macoilin: Transmembra 94.6 4.3 9.3E-05 46.2 20.9 26 98-123 422-447 (697)
106 PF08317 Spc7: Spc7 kinetochor 94.6 6.5 0.00014 40.5 21.7 79 188-270 205-294 (325)
107 KOG2114 Vacuolar assembly/sort 94.4 0.018 3.8E-07 64.7 1.6 43 6-61 837-880 (933)
108 PF05701 WEMBL: Weak chloropla 94.4 9.6 0.00021 41.9 22.7 32 239-270 387-418 (522)
109 KOG0977 Nuclear envelope prote 94.3 4.1 8.8E-05 44.8 19.2 25 207-231 239-263 (546)
110 PF00261 Tropomyosin: Tropomyo 94.3 5 0.00011 39.3 18.5 67 208-274 132-198 (237)
111 KOG0161 Myosin class II heavy 94.3 8.7 0.00019 48.2 23.9 55 214-268 1467-1521(1930)
112 PF15290 Syntaphilin: Golgi-lo 94.3 1.5 3.3E-05 43.9 14.4 82 96-180 70-151 (305)
113 PRK09039 hypothetical protein; 94.3 7.5 0.00016 40.4 20.5 50 213-262 119-168 (343)
114 KOG3161 Predicted E3 ubiquitin 94.3 0.016 3.4E-07 63.2 0.7 44 9-61 11-54 (861)
115 PF15254 CCDC14: Coiled-coil d 94.2 5.8 0.00013 44.9 20.2 116 147-269 431-553 (861)
116 PF05667 DUF812: Protein of un 94.2 5.5 0.00012 44.5 20.2 64 211-274 455-527 (594)
117 PHA02862 5L protein; Provision 94.1 0.04 8.8E-07 49.8 3.0 49 10-67 3-56 (156)
118 KOG4643 Uncharacterized coiled 94.1 7.9 0.00017 45.1 21.2 58 211-268 395-452 (1195)
119 PF12128 DUF3584: Protein of u 94.1 17 0.00037 44.0 25.7 99 209-311 475-573 (1201)
120 PRK02224 chromosome segregatio 94.1 15 0.00032 42.7 26.4 12 9-20 451-462 (880)
121 KOG2817 Predicted E3 ubiquitin 94.0 0.041 8.9E-07 57.2 3.1 55 6-64 331-385 (394)
122 KOG0980 Actin-binding protein 93.9 16 0.00034 42.2 23.9 50 208-257 471-520 (980)
123 PF07888 CALCOCO1: Calcium bin 93.8 13 0.00027 41.1 25.7 61 210-270 283-350 (546)
124 PF05667 DUF812: Protein of un 93.8 14 0.0003 41.4 23.9 21 104-124 331-351 (594)
125 COG5236 Uncharacterized conser 93.8 0.051 1.1E-06 55.4 3.2 50 6-64 58-108 (493)
126 KOG0971 Microtubule-associated 93.7 16 0.00034 42.3 22.5 64 210-273 475-546 (1243)
127 COG4372 Uncharacterized protei 93.7 11 0.00023 39.7 23.8 37 206-242 206-242 (499)
128 PF10174 Cast: RIM-binding pro 93.7 16 0.00035 42.1 23.2 63 208-274 431-494 (775)
129 PF05290 Baculo_IE-1: Baculovi 93.7 0.059 1.3E-06 48.1 3.1 54 8-67 79-135 (140)
130 PHA02562 46 endonuclease subun 93.6 13 0.00028 40.6 23.0 22 90-111 177-198 (562)
131 KOG4367 Predicted Zn-finger pr 93.6 0.036 7.9E-07 58.0 2.0 34 7-46 2-36 (699)
132 KOG0161 Myosin class II heavy 93.6 15 0.00033 46.2 24.1 47 225-271 1098-1144(1930)
133 PF06160 EzrA: Septation ring 93.6 14 0.00031 40.9 23.8 62 111-172 274-335 (560)
134 PRK09039 hypothetical protein; 93.5 9.8 0.00021 39.6 19.7 35 236-270 149-183 (343)
135 KOG0612 Rho-associated, coiled 93.5 19 0.0004 43.0 23.1 6 14-19 371-376 (1317)
136 KOG0963 Transcription factor/C 93.4 13 0.00029 41.1 21.0 34 192-225 351-387 (629)
137 PF00261 Tropomyosin: Tropomyo 93.4 8.4 0.00018 37.8 21.4 58 214-271 173-230 (237)
138 KOG1029 Endocytic adaptor prot 93.4 11 0.00023 42.9 20.3 51 218-268 473-523 (1118)
139 KOG0826 Predicted E3 ubiquitin 93.4 0.052 1.1E-06 55.1 2.6 47 8-64 299-346 (357)
140 KOG1899 LAR transmembrane tyro 93.4 16 0.00034 40.7 27.1 75 89-163 106-187 (861)
141 PF10481 CENP-F_N: Cenp-F N-te 93.3 3.3 7.2E-05 41.4 14.7 46 139-184 35-80 (307)
142 KOG4643 Uncharacterized coiled 93.2 17 0.00038 42.4 22.0 88 208-296 507-603 (1195)
143 PF10168 Nup88: Nuclear pore c 93.1 4.6 0.0001 46.1 17.8 101 142-270 564-664 (717)
144 PF14662 CCDC155: Coiled-coil 93.0 8.4 0.00018 36.8 16.4 60 211-270 68-127 (193)
145 smart00787 Spc7 Spc7 kinetocho 92.9 13 0.00027 38.3 19.4 79 208-286 202-283 (312)
146 KOG1952 Transcription factor N 92.8 0.066 1.4E-06 60.3 2.6 52 8-60 190-243 (950)
147 COG4026 Uncharacterized protei 92.8 1.2 2.7E-05 43.2 10.7 69 213-281 152-220 (290)
148 COG1579 Zn-ribbon protein, pos 92.7 11 0.00024 37.3 20.8 29 144-172 46-74 (239)
149 PRK04863 mukB cell division pr 92.7 28 0.0006 43.1 24.5 21 420-440 712-732 (1486)
150 PF13166 AAA_13: AAA domain 92.7 6.5 0.00014 44.4 18.4 49 231-279 417-471 (712)
151 KOG0978 E3 ubiquitin ligase in 92.6 22 0.00047 40.3 23.1 50 220-269 562-611 (698)
152 KOG0298 DEAD box-containing he 92.6 0.038 8.2E-07 64.6 0.3 47 9-64 1153-1199(1394)
153 KOG0933 Structural maintenance 92.6 26 0.00056 41.1 23.7 14 438-451 1135-1148(1174)
154 KOG3268 Predicted E3 ubiquitin 92.5 0.067 1.5E-06 49.9 1.7 37 30-66 188-230 (234)
155 KOG0994 Extracellular matrix g 92.4 11 0.00025 44.5 19.2 24 207-230 1508-1531(1758)
156 KOG0977 Nuclear envelope prote 92.1 22 0.00048 39.2 20.9 63 208-270 153-215 (546)
157 PF12128 DUF3584: Protein of u 92.0 21 0.00047 43.2 22.4 37 88-124 601-637 (1201)
158 COG0419 SbcC ATPase involved i 92.0 31 0.00066 40.5 24.2 30 390-419 827-858 (908)
159 KOG2034 Vacuolar sorting prote 92.0 0.085 1.8E-06 59.8 2.1 36 8-46 816-851 (911)
160 COG4477 EzrA Negative regulato 91.9 22 0.00048 38.9 20.0 141 113-261 279-433 (570)
161 KOG3970 Predicted E3 ubiquitin 91.8 0.21 4.5E-06 48.4 4.2 60 5-67 46-108 (299)
162 KOG1029 Endocytic adaptor prot 91.8 28 0.00061 39.8 21.6 59 212-270 530-588 (1118)
163 PF00038 Filament: Intermediat 91.7 16 0.00035 36.9 25.2 40 231-270 195-234 (312)
164 KOG1940 Zn-finger protein [Gen 91.7 0.097 2.1E-06 52.5 2.0 46 10-61 159-204 (276)
165 PF05911 DUF869: Plant protein 91.7 29 0.00063 40.0 21.7 58 213-270 109-166 (769)
166 KOG4674 Uncharacterized conser 91.5 46 0.00099 41.7 24.4 20 252-271 805-824 (1822)
167 KOG0933 Structural maintenance 91.5 35 0.00075 40.1 21.8 13 248-260 909-921 (1174)
168 PF12906 RINGv: RING-variant d 91.2 0.16 3.5E-06 37.3 2.3 42 12-59 1-47 (47)
169 PF05883 Baculo_RING: Baculovi 90.9 0.11 2.3E-06 46.7 1.2 36 9-46 26-67 (134)
170 KOG2932 E3 ubiquitin ligase in 90.9 0.08 1.7E-06 53.4 0.5 30 28-64 105-134 (389)
171 PF10174 Cast: RIM-binding pro 90.9 36 0.00078 39.3 21.5 27 91-117 7-33 (775)
172 PF09730 BicD: Microtubule-ass 90.4 38 0.00082 38.8 22.2 26 225-250 122-147 (717)
173 PF10186 Atg14: UV radiation r 90.3 20 0.00044 35.5 21.4 37 245-281 119-155 (302)
174 PF04849 HAP1_N: HAP1 N-termin 90.2 24 0.00052 36.2 19.4 68 212-280 236-303 (306)
175 KOG3053 Uncharacterized conser 89.9 0.18 3.9E-06 49.7 1.9 60 4-64 15-82 (293)
176 PLN03188 kinesin-12 family pro 89.8 37 0.00081 40.9 20.6 29 156-184 1134-1168(1320)
177 KOG4674 Uncharacterized conser 89.8 64 0.0014 40.5 25.9 56 209-264 216-271 (1822)
178 PF15397 DUF4618: Domain of un 89.7 24 0.00052 35.4 23.2 45 235-279 190-234 (258)
179 KOG0980 Actin-binding protein 89.6 46 0.001 38.6 23.5 44 225-268 467-517 (980)
180 PF10473 CENP-F_leu_zip: Leuci 89.4 16 0.00036 33.2 14.6 68 207-274 49-116 (140)
181 KOG0825 PHD Zn-finger protein 89.3 0.2 4.4E-06 56.0 2.0 59 8-67 95-157 (1134)
182 PF10186 Atg14: UV radiation r 89.0 25 0.00055 34.8 20.9 10 34-43 11-20 (302)
183 PF09789 DUF2353: Uncharacteri 88.7 32 0.00069 35.5 17.6 24 247-270 191-214 (319)
184 KOG0979 Structural maintenance 88.7 57 0.0012 38.4 21.8 13 7-19 55-67 (1072)
185 KOG0964 Structural maintenance 88.6 57 0.0012 38.4 21.0 177 136-321 321-503 (1200)
186 COG2433 Uncharacterized conser 88.5 11 0.00023 41.9 14.1 90 154-265 419-508 (652)
187 PF05483 SCP-1: Synaptonemal c 88.4 49 0.0011 37.4 23.6 74 210-283 594-667 (786)
188 KOG0999 Microtubule-associated 88.3 45 0.00097 36.8 20.6 26 225-250 195-220 (772)
189 KOG1842 FYVE finger-containing 88.3 2.6 5.7E-05 44.7 9.2 38 5-43 176-213 (505)
190 PF10168 Nup88: Nuclear pore c 88.3 54 0.0012 37.6 24.0 7 8-14 363-369 (717)
191 KOG0962 DNA repair protein RAD 88.2 70 0.0015 38.8 23.4 63 208-270 817-879 (1294)
192 KOG1571 Predicted E3 ubiquitin 88.2 0.21 4.6E-06 51.4 1.2 31 27-65 318-348 (355)
193 COG4694 Uncharacterized protei 88.2 31 0.00067 38.2 17.2 88 225-314 446-536 (758)
194 KOG1812 Predicted E3 ubiquitin 88.0 0.29 6.4E-06 51.6 2.1 51 7-58 144-195 (384)
195 PF03854 zf-P11: P-11 zinc fin 87.9 0.23 5E-06 36.6 0.9 33 29-66 15-48 (50)
196 COG4942 Membrane-bound metallo 87.9 42 0.0009 35.9 24.2 60 92-151 43-102 (420)
197 KOG0971 Microtubule-associated 87.9 61 0.0013 37.8 23.9 34 229-262 408-441 (1243)
198 KOG1428 Inhibitor of type V ad 87.9 0.37 8E-06 57.1 2.9 55 8-64 3485-3544(3738)
199 PF00038 Filament: Intermediat 87.8 33 0.00071 34.6 23.5 38 92-129 52-89 (312)
200 PRK01156 chromosome segregatio 87.6 63 0.0014 37.7 21.5 10 10-19 453-462 (895)
201 KOG4362 Transcriptional regula 87.5 0.14 3E-06 57.1 -0.7 53 6-66 18-71 (684)
202 PF15070 GOLGA2L5: Putative go 87.3 56 0.0012 36.8 24.3 10 159-168 124-133 (617)
203 PF12325 TMF_TATA_bd: TATA ele 87.3 20 0.00044 31.7 13.4 34 236-269 80-113 (120)
204 PF00769 ERM: Ezrin/radixin/mo 87.1 22 0.00047 35.3 14.6 62 225-286 76-137 (246)
205 PF10272 Tmpp129: Putative tra 86.9 0.45 9.7E-06 49.6 2.7 33 34-66 313-353 (358)
206 COG1340 Uncharacterized archae 86.8 39 0.00084 34.5 23.1 31 243-273 212-242 (294)
207 KOG0999 Microtubule-associated 86.7 56 0.0012 36.1 21.9 46 225-270 171-219 (772)
208 COG5109 Uncharacterized conser 86.3 0.5 1.1E-05 48.0 2.5 54 6-63 333-386 (396)
209 PLN03229 acetyl-coenzyme A car 86.2 69 0.0015 36.7 21.1 48 208-255 647-705 (762)
210 PF09730 BicD: Microtubule-ass 86.1 70 0.0015 36.7 24.1 6 171-176 104-109 (717)
211 PF05701 WEMBL: Weak chloropla 85.9 60 0.0013 35.7 25.0 53 228-280 369-421 (522)
212 TIGR02680 conserved hypothetic 85.8 1E+02 0.0022 38.1 25.3 122 133-271 266-387 (1353)
213 PF11559 ADIP: Afadin- and alp 85.4 28 0.00061 31.5 14.2 28 235-262 123-150 (151)
214 PF10498 IFT57: Intra-flagella 85.0 54 0.0012 34.4 17.4 53 209-261 293-351 (359)
215 PRK04778 septation ring format 84.9 69 0.0015 35.6 21.2 50 210-259 383-432 (569)
216 KOG4360 Uncharacterized coiled 84.6 67 0.0015 35.1 18.0 45 140-184 202-246 (596)
217 PF04849 HAP1_N: HAP1 N-termin 84.5 52 0.0011 33.8 22.1 105 160-264 163-267 (306)
218 KOG3113 Uncharacterized conser 84.4 1.3 2.7E-05 43.8 4.2 53 7-67 109-161 (293)
219 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.2 30 0.00065 30.8 18.9 25 237-261 104-128 (132)
220 KOG4673 Transcription factor T 84.2 81 0.0018 35.8 19.6 11 260-270 645-655 (961)
221 KOG4275 Predicted E3 ubiquitin 84.0 0.23 5E-06 49.8 -1.0 39 14-64 302-342 (350)
222 PF10481 CENP-F_N: Cenp-F N-te 84.0 51 0.0011 33.3 16.0 61 102-162 40-100 (307)
223 PF12718 Tropomyosin_1: Tropom 84.0 33 0.00072 31.1 17.7 17 246-262 102-118 (143)
224 PF05622 HOOK: HOOK protein; 83.8 0.34 7.3E-06 55.1 0.0 15 211-225 364-378 (713)
225 PF14182 YgaB: YgaB-like prote 83.7 8.2 0.00018 31.6 7.9 54 231-284 24-79 (79)
226 KOG3899 Uncharacterized conser 83.7 0.69 1.5E-05 46.5 2.1 36 32-67 325-368 (381)
227 smart00787 Spc7 Spc7 kinetocho 82.9 61 0.0013 33.4 25.0 10 256-265 275-284 (312)
228 COG4942 Membrane-bound metallo 81.9 78 0.0017 33.9 23.3 31 98-128 42-72 (420)
229 KOG2129 Uncharacterized conser 81.6 79 0.0017 33.8 22.0 39 246-284 279-319 (552)
230 PF06160 EzrA: Septation ring 81.3 95 0.0021 34.5 20.6 115 144-270 102-219 (560)
231 PF04156 IncA: IncA protein; 80.9 49 0.0011 30.9 14.5 7 225-231 138-144 (191)
232 KOG0976 Rho/Rac1-interacting s 80.9 1.2E+02 0.0025 35.2 22.2 14 115-128 120-133 (1265)
233 KOG1812 Predicted E3 ubiquitin 80.8 0.86 1.9E-05 48.1 1.7 38 9-46 306-343 (384)
234 KOG1103 Predicted coiled-coil 80.7 77 0.0017 33.1 17.8 53 225-277 246-299 (561)
235 KOG2991 Splicing regulator [RN 80.5 66 0.0014 32.2 22.1 23 208-230 234-256 (330)
236 KOG0612 Rho-associated, coiled 80.5 1.4E+02 0.0031 36.0 21.6 14 257-270 672-685 (1317)
237 KOG3039 Uncharacterized conser 80.4 1.3 2.8E-05 43.6 2.7 38 3-46 37-75 (303)
238 PF08746 zf-RING-like: RING-li 80.2 1.4 3E-05 31.8 2.1 41 12-59 1-43 (43)
239 PF15619 Lebercilin: Ciliary p 80.1 57 0.0012 31.2 21.0 72 103-174 14-85 (194)
240 KOG1815 Predicted E3 ubiquitin 79.7 1.3 2.8E-05 47.6 2.6 54 7-64 68-126 (444)
241 PF14197 Cep57_CLD_2: Centroso 79.7 26 0.00056 28.0 9.4 57 214-270 9-65 (69)
242 PLN03229 acetyl-coenzyme A car 79.5 1.2E+02 0.0027 34.7 17.8 11 245-255 649-659 (762)
243 PF05911 DUF869: Plant protein 79.2 1.3E+02 0.0028 34.9 19.9 32 211-242 681-712 (769)
244 PF15066 CAGE1: Cancer-associa 78.7 1E+02 0.0022 33.4 19.7 38 237-274 469-507 (527)
245 PF14569 zf-UDP: Zinc-binding 78.6 3 6.4E-05 34.1 3.7 56 5-64 5-62 (80)
246 PRK10884 SH3 domain-containing 77.9 20 0.00044 34.6 10.0 61 207-270 90-150 (206)
247 KOG0018 Structural maintenance 77.7 1.6E+02 0.0035 35.1 19.3 23 431-454 561-583 (1141)
248 PF12718 Tropomyosin_1: Tropom 77.7 55 0.0012 29.7 16.7 16 147-162 39-54 (143)
249 PF09755 DUF2046: Uncharacteri 76.9 94 0.002 32.0 22.8 38 90-127 23-60 (310)
250 KOG0946 ER-Golgi vesicle-tethe 76.6 1.5E+02 0.0033 34.3 17.6 25 156-180 736-760 (970)
251 KOG0018 Structural maintenance 76.3 1.8E+02 0.0038 34.8 19.3 53 231-283 849-901 (1141)
252 PF10234 Cluap1: Clusterin-ass 76.2 70 0.0015 32.2 13.5 53 214-266 166-218 (267)
253 KOG1937 Uncharacterized conser 76.0 1.2E+02 0.0026 32.8 21.8 29 207-235 442-470 (521)
254 KOG4673 Transcription factor T 76.0 1.5E+02 0.0032 33.8 21.7 30 90-119 342-371 (961)
255 PLN02189 cellulose synthase 75.8 2.5 5.5E-05 49.4 3.7 53 8-64 33-87 (1040)
256 PF09728 Taxilin: Myosin-like 75.5 1E+02 0.0022 31.7 23.7 25 207-231 234-258 (309)
257 PF05384 DegS: Sensor protein 75.2 71 0.0015 29.7 21.0 109 145-270 36-144 (159)
258 COG1340 Uncharacterized archae 74.4 1.1E+02 0.0023 31.4 22.7 40 229-268 205-244 (294)
259 PF07191 zinc-ribbons_6: zinc- 74.1 0.25 5.4E-06 39.5 -3.4 41 9-64 1-41 (70)
260 COG3883 Uncharacterized protei 73.8 1E+02 0.0023 31.0 22.6 40 235-274 187-226 (265)
261 KOG0979 Structural maintenance 73.6 2E+02 0.0043 34.2 23.4 7 36-42 59-65 (1072)
262 KOG2391 Vacuolar sorting prote 73.5 31 0.00067 35.8 10.3 66 226-291 227-295 (365)
263 KOG2068 MOT2 transcription fac 73.3 2.5 5.4E-05 43.4 2.5 51 9-66 249-300 (327)
264 PF12329 TMF_DNA_bd: TATA elem 73.2 39 0.00084 27.2 9.0 52 223-274 11-62 (74)
265 PF14915 CCDC144C: CCDC144C pr 73.2 1.1E+02 0.0025 31.2 20.0 49 225-273 201-249 (305)
266 PF08614 ATG16: Autophagy prot 73.0 58 0.0013 30.9 11.7 75 102-176 103-177 (194)
267 PRK04863 mukB cell division pr 72.9 2.6E+02 0.0055 35.1 26.3 33 229-261 440-472 (1486)
268 PF08614 ATG16: Autophagy prot 72.6 50 0.0011 31.3 11.2 79 96-174 104-182 (194)
269 PF02403 Seryl_tRNA_N: Seryl-t 72.3 35 0.00076 28.9 9.1 66 214-279 33-101 (108)
270 KOG3564 GTPase-activating prot 71.8 64 0.0014 35.1 12.4 47 224-270 35-81 (604)
271 PF04111 APG6: Autophagy prote 71.6 71 0.0015 32.9 12.7 50 236-286 90-139 (314)
272 PLN02436 cellulose synthase A 71.5 3.7 8.1E-05 48.2 3.6 53 8-64 35-89 (1094)
273 PF06705 SF-assemblin: SF-asse 71.1 1.1E+02 0.0024 30.1 22.3 77 208-284 159-236 (247)
274 KOG1100 Predicted E3 ubiquitin 71.0 2.1 4.6E-05 41.4 1.4 32 26-66 170-202 (207)
275 PF04949 Transcrip_act: Transc 70.9 87 0.0019 28.8 16.8 58 211-268 99-157 (159)
276 TIGR01843 type_I_hlyD type I s 70.8 1.4E+02 0.003 31.0 22.8 14 444-457 385-398 (423)
277 PF09766 FimP: Fms-interacting 70.7 1.4E+02 0.0031 31.2 15.5 62 209-270 90-154 (355)
278 PF08826 DMPK_coil: DMPK coile 70.5 49 0.0011 25.8 9.1 40 231-270 18-57 (61)
279 PLN02638 cellulose synthase A 68.4 4.7 0.0001 47.5 3.7 54 7-64 15-70 (1079)
280 PRK10803 tol-pal system protei 68.4 35 0.00077 34.1 9.5 64 208-271 38-101 (263)
281 KOG1899 LAR transmembrane tyro 67.6 1.8E+02 0.004 32.8 15.0 82 254-335 276-370 (861)
282 KOG0243 Kinesin-like protein [ 67.6 2.7E+02 0.0059 33.3 20.3 19 38-56 344-362 (1041)
283 PF14992 TMCO5: TMCO5 family 67.5 1.5E+02 0.0032 30.2 17.1 37 92-128 9-45 (280)
284 KOG0946 ER-Golgi vesicle-tethe 67.5 2.5E+02 0.0053 32.7 18.0 11 286-296 832-842 (970)
285 PF06005 DUF904: Protein of un 67.4 64 0.0014 26.0 9.9 57 213-269 7-63 (72)
286 PF04111 APG6: Autophagy prote 67.4 51 0.0011 33.9 10.6 44 214-257 47-90 (314)
287 PF10224 DUF2205: Predicted co 67.2 38 0.00082 27.9 7.7 42 143-184 23-64 (80)
288 PF06785 UPF0242: Uncharacteri 67.1 1.6E+02 0.0036 30.6 15.8 26 245-270 194-219 (401)
289 PF07106 TBPIP: Tat binding pr 66.8 33 0.00071 31.7 8.4 60 211-270 73-134 (169)
290 PF05010 TACC: Transforming ac 66.7 1.3E+02 0.0028 29.2 23.4 25 246-270 162-186 (207)
291 PF13870 DUF4201: Domain of un 66.7 1.1E+02 0.0024 28.4 20.0 28 245-272 145-172 (177)
292 KOG3579 Predicted E3 ubiquitin 66.6 2.6 5.6E-05 42.4 0.9 49 8-57 267-315 (352)
293 KOG4185 Predicted E3 ubiquitin 66.5 1.3 2.8E-05 44.6 -1.2 51 8-62 206-265 (296)
294 PF09738 DUF2051: Double stran 66.3 58 0.0012 33.4 10.6 58 211-275 113-170 (302)
295 COG4026 Uncharacterized protei 66.2 1.4E+02 0.003 29.4 13.1 54 218-271 129-182 (290)
296 PLN02939 transferase, transfer 66.1 2.9E+02 0.0062 33.0 20.0 54 227-282 327-381 (977)
297 KOG0963 Transcription factor/C 65.9 2.3E+02 0.005 31.8 23.1 26 245-270 310-335 (629)
298 TIGR00634 recN DNA repair prot 65.7 2.2E+02 0.0048 31.5 24.7 47 225-271 323-372 (563)
299 KOG4677 Golgi integral membran 65.1 2.1E+02 0.0045 31.0 18.8 45 225-269 425-469 (554)
300 PF10146 zf-C4H2: Zinc finger- 64.9 1.5E+02 0.0032 29.2 14.5 46 226-271 55-100 (230)
301 KOG1853 LIS1-interacting prote 64.6 1.6E+02 0.0035 29.5 19.9 21 252-272 164-184 (333)
302 PF10046 BLOC1_2: Biogenesis o 64.5 88 0.0019 26.5 12.5 49 214-262 46-97 (99)
303 KOG3647 Predicted coiled-coil 64.4 1.7E+02 0.0036 29.7 13.2 12 407-418 326-337 (338)
304 PF06548 Kinesin-related: Kine 64.3 2.2E+02 0.0047 30.9 19.8 29 156-184 364-398 (488)
305 KOG0976 Rho/Rac1-interacting s 64.2 2.9E+02 0.0062 32.3 22.5 28 252-279 284-311 (1265)
306 KOG0309 Conserved WD40 repeat- 64.1 4.4 9.5E-05 45.7 2.2 40 11-58 1030-1069(1081)
307 PF05377 FlaC_arch: Flagella a 64.0 36 0.00077 26.1 6.4 46 228-273 4-49 (55)
308 COG2433 Uncharacterized conser 63.9 1.2E+02 0.0025 34.1 12.8 76 95-170 430-508 (652)
309 COG4372 Uncharacterized protei 63.9 2.1E+02 0.0045 30.5 23.4 15 434-448 468-482 (499)
310 PF13870 DUF4201: Domain of un 63.6 1.3E+02 0.0027 28.0 17.5 23 246-268 153-175 (177)
311 KOG4809 Rab6 GTPase-interactin 63.4 2.5E+02 0.0053 31.3 19.8 20 109-128 332-351 (654)
312 PF04710 Pellino: Pellino; In 63.0 2.4 5.2E-05 44.5 0.0 58 9-66 328-403 (416)
313 PF12325 TMF_TATA_bd: TATA ele 62.7 1.1E+02 0.0024 27.1 13.7 84 88-171 17-110 (120)
314 PF14446 Prok-RING_1: Prokaryo 62.6 7.4 0.00016 29.6 2.6 35 7-42 3-37 (54)
315 PF10571 UPF0547: Uncharacteri 62.6 4 8.6E-05 26.4 0.9 23 11-36 2-24 (26)
316 PF08647 BRE1: BRE1 E3 ubiquit 62.4 75 0.0016 26.8 9.0 66 215-281 1-66 (96)
317 KOG4360 Uncharacterized coiled 62.4 2E+02 0.0044 31.6 14.0 40 142-184 253-292 (596)
318 PRK10869 recombination and rep 62.3 2.6E+02 0.0055 31.1 24.5 14 327-340 407-420 (553)
319 PF10498 IFT57: Intra-flagella 61.8 2.1E+02 0.0046 30.0 18.6 40 216-255 279-318 (359)
320 PF14662 CCDC155: Coiled-coil 61.7 1.5E+02 0.0033 28.4 24.0 9 93-101 21-29 (193)
321 PLN02400 cellulose synthase 61.7 6.8 0.00015 46.2 3.3 53 8-64 35-89 (1085)
322 COG5183 SSM4 Protein involved 61.4 8 0.00017 44.1 3.6 58 4-67 7-69 (1175)
323 PF02183 HALZ: Homeobox associ 60.9 27 0.0006 25.5 5.2 23 246-268 20-42 (45)
324 PF05622 HOOK: HOOK protein; 60.9 2.8 6E-05 47.8 0.0 41 228-268 367-407 (713)
325 PF10205 KLRAQ: Predicted coil 60.8 90 0.002 26.9 9.1 57 212-276 14-71 (102)
326 PF15070 GOLGA2L5: Putative go 60.8 2.9E+02 0.0063 31.3 22.0 14 226-239 246-259 (617)
327 cd00632 Prefoldin_beta Prefold 60.4 1.1E+02 0.0023 26.0 13.5 39 227-265 66-104 (105)
328 PF10497 zf-4CXXC_R1: Zinc-fin 60.3 9.3 0.0002 33.0 3.1 60 5-64 3-72 (105)
329 PF09789 DUF2353: Uncharacteri 59.9 2.2E+02 0.0047 29.5 20.1 42 227-268 136-177 (319)
330 PF11932 DUF3450: Protein of u 59.8 62 0.0013 31.9 9.4 56 214-269 46-101 (251)
331 COG3883 Uncharacterized protei 59.4 2E+02 0.0044 29.0 21.4 21 250-270 188-208 (265)
332 KOG0249 LAR-interacting protei 59.4 3.3E+02 0.0071 31.4 18.1 43 208-250 214-256 (916)
333 PRK05431 seryl-tRNA synthetase 59.3 65 0.0014 34.5 10.0 68 213-280 31-101 (425)
334 PRK10246 exonuclease subunit S 59.3 3.9E+02 0.0084 32.2 25.7 14 52-65 502-515 (1047)
335 KOG1829 Uncharacterized conser 58.9 3.7 8.1E-05 45.4 0.6 43 9-59 511-556 (580)
336 PLN02915 cellulose synthase A 58.8 9.3 0.0002 45.0 3.7 56 5-64 11-68 (1044)
337 smart00030 CLb CLUSTERIN Beta 58.7 1.2E+02 0.0026 29.3 10.4 49 235-283 40-91 (206)
338 PF15066 CAGE1: Cancer-associa 58.5 2.8E+02 0.006 30.3 20.6 35 246-284 454-488 (527)
339 PF06637 PV-1: PV-1 protein (P 58.5 2.5E+02 0.0055 29.8 13.6 39 245-284 356-394 (442)
340 PF14193 DUF4315: Domain of un 58.4 49 0.0011 27.4 6.9 49 242-290 5-53 (83)
341 PLN02678 seryl-tRNA synthetase 58.4 71 0.0015 34.6 10.1 67 214-280 37-106 (448)
342 TIGR01069 mutS2 MutS2 family p 58.4 76 0.0016 36.8 10.9 65 208-272 495-559 (771)
343 PF13094 CENP-Q: CENP-Q, a CEN 58.2 81 0.0017 28.8 9.2 63 212-274 22-84 (160)
344 PF10212 TTKRSYEDQ: Predicted 58.0 3E+02 0.0064 30.4 17.2 58 213-270 444-505 (518)
345 PRK03947 prefoldin subunit alp 57.6 28 0.00061 31.0 6.0 35 232-266 102-136 (140)
346 PF05605 zf-Di19: Drought indu 57.3 5.8 0.00012 29.7 1.2 41 9-64 2-42 (54)
347 KOG1853 LIS1-interacting prote 57.2 2.2E+02 0.0047 28.6 21.2 23 208-230 103-125 (333)
348 PF06810 Phage_GP20: Phage min 56.7 57 0.0012 30.1 7.9 17 246-262 52-68 (155)
349 KOG1609 Protein involved in mR 56.6 7.3 0.00016 39.1 2.2 54 9-66 78-136 (323)
350 TIGR02680 conserved hypothetic 56.4 4.8E+02 0.01 32.4 23.0 27 98-124 746-772 (1353)
351 KOG3842 Adaptor protein Pellin 56.2 9.3 0.0002 39.1 2.8 41 27-67 373-417 (429)
352 KOG4460 Nuclear pore complex, 56.2 1.1E+02 0.0025 33.8 10.9 61 210-270 566-627 (741)
353 PF07111 HCR: Alpha helical co 56.2 3.6E+02 0.0078 30.9 21.2 20 250-269 637-656 (739)
354 PF13851 GAS: Growth-arrest sp 56.0 1.9E+02 0.0042 27.7 22.7 38 135-172 71-108 (201)
355 KOG0249 LAR-interacting protei 55.6 3.8E+02 0.0081 30.9 18.4 20 236-255 235-254 (916)
356 PF05529 Bap31: B-cell recepto 55.5 52 0.0011 31.0 7.7 31 237-267 160-190 (192)
357 PF10473 CENP-F_leu_zip: Leuci 54.8 1.7E+02 0.0037 26.7 18.9 28 94-121 10-37 (140)
358 smart00064 FYVE Protein presen 54.6 6.3 0.00014 30.6 1.1 37 9-46 10-46 (68)
359 TIGR00414 serS seryl-tRNA synt 54.5 95 0.0021 33.2 10.3 67 214-280 34-104 (418)
360 smart00249 PHD PHD zinc finger 54.4 4.8 0.0001 27.9 0.4 47 11-59 1-47 (47)
361 PF02318 FYVE_2: FYVE-type zin 54.4 6.6 0.00014 34.3 1.3 52 6-61 51-102 (118)
362 KOG2150 CCR4-NOT transcription 54.2 3.5E+02 0.0076 30.2 18.1 24 90-113 4-27 (575)
363 PF07795 DUF1635: Protein of u 54.2 1.1E+02 0.0024 29.8 9.6 51 211-271 2-52 (214)
364 PF07227 DUF1423: Protein of u 54.1 2E+02 0.0043 31.1 12.3 34 9-44 128-164 (446)
365 KOG0269 WD40 repeat-containing 53.9 11 0.00023 42.9 3.0 48 10-65 780-829 (839)
366 KOG3799 Rab3 effector RIM1 and 53.9 8.1 0.00017 34.8 1.7 48 6-62 62-116 (169)
367 PF09755 DUF2046: Uncharacteri 53.6 2.7E+02 0.0059 28.7 24.6 41 91-131 31-71 (310)
368 PLN02195 cellulose synthase A 53.2 14 0.00031 43.3 4.0 55 8-66 5-61 (977)
369 PF14915 CCDC144C: CCDC144C pr 53.0 2.7E+02 0.0059 28.5 18.5 17 162-178 219-235 (305)
370 PF10157 DUF2365: Uncharacteri 52.9 1.9E+02 0.0041 26.6 13.7 50 213-266 98-147 (149)
371 PHA02047 phage lambda Rz1-like 52.8 75 0.0016 27.1 7.1 48 237-284 33-80 (101)
372 PF05010 TACC: Transforming ac 52.6 2.3E+02 0.0049 27.5 20.9 16 245-260 143-158 (207)
373 TIGR02449 conserved hypothetic 52.6 1.2E+02 0.0025 24.1 8.6 60 218-281 1-60 (65)
374 PF07106 TBPIP: Tat binding pr 52.5 1.1E+02 0.0025 28.1 9.3 17 253-269 146-162 (169)
375 PF11932 DUF3450: Protein of u 52.2 1.8E+02 0.0038 28.7 11.1 68 221-288 60-127 (251)
376 PF01093 Clusterin: Clusterin; 52.1 99 0.0022 33.4 9.8 46 237-282 36-84 (436)
377 TIGR03752 conj_TIGR03752 integ 52.1 97 0.0021 33.7 9.7 48 206-253 55-102 (472)
378 PF12329 TMF_DNA_bd: TATA elem 52.1 1.2E+02 0.0027 24.3 9.0 12 245-256 54-65 (74)
379 PRK00409 recombination and DNA 51.7 1.1E+02 0.0023 35.6 10.8 8 54-61 356-363 (782)
380 PF08172 CASP_C: CASP C termin 51.4 2.4E+02 0.0052 28.1 11.9 38 147-184 97-137 (248)
381 PLN02320 seryl-tRNA synthetase 50.9 1E+02 0.0022 34.0 9.8 60 221-280 104-165 (502)
382 KOG4718 Non-SMC (structural ma 50.8 9 0.00019 37.1 1.6 46 10-64 182-227 (235)
383 PF15456 Uds1: Up-regulated Du 50.7 1.8E+02 0.004 25.8 10.4 28 247-274 76-103 (124)
384 PF03915 AIP3: Actin interacti 50.5 2.8E+02 0.006 29.9 12.9 72 208-281 225-306 (424)
385 KOG1729 FYVE finger containing 50.0 3.1 6.7E-05 42.3 -1.7 56 8-64 167-225 (288)
386 PRK11281 hypothetical protein; 49.5 5.7E+02 0.012 31.2 22.0 27 245-271 227-253 (1113)
387 PF15290 Syntaphilin: Golgi-lo 49.3 3E+02 0.0066 28.0 14.4 6 270-275 170-175 (305)
388 PF04799 Fzo_mitofusin: fzo-li 49.3 1.3E+02 0.0028 28.4 8.9 53 220-276 116-168 (171)
389 PF01363 FYVE: FYVE zinc finge 48.8 4.9 0.00011 31.3 -0.4 37 7-44 7-43 (69)
390 PF06844 DUF1244: Protein of u 48.6 11 0.00024 29.9 1.5 13 35-47 11-23 (68)
391 KOG0289 mRNA splicing factor [ 48.0 1.5E+02 0.0033 31.9 10.1 47 11-67 2-49 (506)
392 PRK13729 conjugal transfer pil 48.0 75 0.0016 34.6 8.1 44 225-268 77-120 (475)
393 TIGR02231 conserved hypothetic 47.9 74 0.0016 34.8 8.5 26 245-270 145-170 (525)
394 PF10267 Tmemb_cc2: Predicted 47.7 3.5E+02 0.0075 28.9 12.9 90 159-279 214-303 (395)
395 KOG0982 Centrosomal protein Nu 47.5 4E+02 0.0086 28.8 19.6 10 35-44 160-169 (502)
396 PF05600 DUF773: Protein of un 47.3 4.3E+02 0.0093 29.1 16.0 64 207-270 429-492 (507)
397 PF05377 FlaC_arch: Flagella a 47.2 63 0.0014 24.8 5.3 36 233-268 2-37 (55)
398 PF09738 DUF2051: Double stran 46.8 3.4E+02 0.0074 27.9 13.6 26 246-271 220-245 (302)
399 cd00065 FYVE FYVE domain; Zinc 46.6 12 0.00025 27.9 1.4 36 10-46 3-38 (57)
400 PF04977 DivIC: Septum formati 46.5 59 0.0013 25.5 5.6 35 237-271 23-57 (80)
401 smart00647 IBR In Between Ring 45.9 5.3 0.00011 30.2 -0.6 36 9-44 18-58 (64)
402 PF01485 IBR: IBR domain; Int 45.8 2.7 5.9E-05 31.7 -2.2 35 10-44 19-58 (64)
403 KOG2129 Uncharacterized conser 45.5 4.2E+02 0.0091 28.5 17.9 22 209-230 259-280 (552)
404 KOG1962 B-cell receptor-associ 45.2 2.9E+02 0.0063 27.0 11.0 8 263-270 183-190 (216)
405 cd00089 HR1 Protein kinase C-r 45.1 91 0.002 24.6 6.4 61 208-270 7-67 (72)
406 KOG2066 Vacuolar assembly/sort 45.1 8.6 0.00019 43.7 0.6 37 10-46 785-823 (846)
407 KOG0824 Predicted E3 ubiquitin 44.7 6.8 0.00015 39.8 -0.2 48 8-65 104-152 (324)
408 KOG3726 Uncharacterized conser 44.6 11 0.00025 42.1 1.5 43 10-61 655-697 (717)
409 KOG4348 Adaptor protein CMS/SE 44.3 95 0.0021 33.4 8.0 61 206-269 565-625 (627)
410 PF01576 Myosin_tail_1: Myosin 43.7 7.7 0.00017 45.3 0.0 42 214-255 325-366 (859)
411 PF02183 HALZ: Homeobox associ 43.6 97 0.0021 22.6 5.7 16 245-260 26-41 (45)
412 PF11559 ADIP: Afadin- and alp 43.5 2.5E+02 0.0053 25.3 12.8 15 148-162 106-120 (151)
413 PF12761 End3: Actin cytoskele 43.3 2.2E+02 0.0048 27.4 9.7 16 92-107 101-116 (195)
414 KOG2751 Beclin-like protein [S 43.2 2.9E+02 0.0063 29.7 11.4 20 360-379 349-368 (447)
415 PF04710 Pellino: Pellino; In 43.1 8 0.00017 40.7 0.0 53 9-64 277-339 (416)
416 PF13815 Dzip-like_N: Iguana/D 42.9 2.1E+02 0.0046 24.8 9.0 43 225-267 74-116 (118)
417 KOG3650 Predicted coiled-coil 42.8 1E+02 0.0022 26.5 6.4 38 147-184 67-104 (120)
418 KOG1962 B-cell receptor-associ 42.6 2.3E+02 0.0049 27.8 9.8 37 148-184 156-192 (216)
419 PF07851 TMPIT: TMPIT-like pro 42.6 1.5E+02 0.0034 30.7 9.2 62 221-282 15-76 (330)
420 KOG1850 Myosin-like coiled-coi 42.5 4.1E+02 0.009 27.6 22.8 170 96-276 111-281 (391)
421 PF05266 DUF724: Protein of un 42.1 3.1E+02 0.0068 26.1 12.0 50 225-274 132-181 (190)
422 PF05483 SCP-1: Synaptonemal c 41.7 5.9E+02 0.013 29.2 22.5 55 101-155 106-160 (786)
423 PF10805 DUF2730: Protein of u 41.6 2.3E+02 0.0049 24.3 9.6 61 208-268 33-95 (106)
424 PF05529 Bap31: B-cell recepto 41.3 1.5E+02 0.0032 27.9 8.3 29 245-273 161-189 (192)
425 KOG4443 Putative transcription 41.3 12 0.00026 41.8 1.0 57 7-63 16-72 (694)
426 PF12999 PRKCSH-like: Glucosid 41.2 1.5E+02 0.0032 28.1 8.0 27 246-272 147-173 (176)
427 PF00628 PHD: PHD-finger; Int 41.0 3.6 7.7E-05 30.0 -2.2 49 11-61 1-50 (51)
428 PF04216 FdhE: Protein involve 40.8 5.8 0.00013 40.0 -1.4 52 6-63 169-221 (290)
429 PF10234 Cluap1: Clusterin-ass 40.6 4E+02 0.0087 26.9 12.3 18 180-197 213-230 (267)
430 KOG4218 Nuclear hormone recept 40.6 7.2 0.00016 40.3 -0.8 17 4-20 10-26 (475)
431 KOG0962 DNA repair protein RAD 40.5 8E+02 0.017 30.3 22.3 36 246-281 1002-1037(1294)
432 TIGR01843 type_I_hlyD type I s 40.2 4.4E+02 0.0095 27.2 23.2 37 206-242 192-228 (423)
433 PF06785 UPF0242: Uncharacteri 40.0 4.6E+02 0.01 27.4 17.8 6 339-344 293-298 (401)
434 PRK00409 recombination and DNA 39.9 6.6E+02 0.014 29.2 16.1 8 363-370 740-747 (782)
435 KOG1265 Phospholipase C [Lipid 39.7 5.8E+02 0.013 30.3 13.6 141 147-290 1030-1173(1189)
436 COG1730 GIM5 Predicted prefold 39.3 2.4E+02 0.0053 25.8 9.0 40 229-268 99-138 (145)
437 PF13717 zinc_ribbon_4: zinc-r 39.1 16 0.00035 25.2 1.0 11 10-20 3-13 (36)
438 PF06810 Phage_GP20: Phage min 38.9 3.1E+02 0.0068 25.2 10.9 17 253-269 52-68 (155)
439 KOG4005 Transcription factor X 38.7 4.1E+02 0.0089 26.5 11.6 35 145-179 92-126 (292)
440 PF04880 NUDE_C: NUDE protein, 38.7 53 0.0012 30.8 4.7 31 136-166 17-47 (166)
441 PF04782 DUF632: Protein of un 38.6 2E+02 0.0043 29.7 9.2 109 207-321 79-199 (312)
442 PF15616 TerY-C: TerY-C metal 38.6 19 0.00042 32.4 1.7 43 7-65 75-117 (131)
443 KOG4807 F-actin binding protei 38.5 5.2E+02 0.011 27.6 17.9 172 88-272 394-585 (593)
444 KOG3091 Nuclear pore complex, 38.3 5.8E+02 0.013 28.1 13.2 100 145-269 336-445 (508)
445 cd07657 F-BAR_Fes_Fer The F-BA 38.1 4E+02 0.0087 26.2 16.2 59 217-282 126-191 (237)
446 PF09728 Taxilin: Myosin-like 38.1 4.6E+02 0.01 26.9 23.6 59 210-268 223-288 (309)
447 PF10226 DUF2216: Uncharacteri 37.9 3.7E+02 0.0081 25.8 17.1 38 147-184 45-82 (195)
448 COG0172 SerS Seryl-tRNA synthe 37.7 2.2E+02 0.0049 30.7 9.8 69 211-279 30-102 (429)
449 PF13719 zinc_ribbon_5: zinc-r 37.6 18 0.00039 25.1 1.1 11 10-20 3-13 (37)
450 PF02403 Seryl_tRNA_N: Seryl-t 37.5 1.6E+02 0.0034 24.9 7.2 28 243-270 72-99 (108)
451 PF05615 THOC7: Tho complex su 37.4 3E+02 0.0064 24.4 10.5 61 210-270 46-106 (139)
452 PF13514 AAA_27: AAA domain 36.9 8.3E+02 0.018 29.5 23.5 9 437-445 1049-1057(1111)
453 smart00502 BBC B-Box C-termina 36.8 2.5E+02 0.0054 23.4 12.9 26 245-270 79-104 (127)
454 PF14193 DUF4315: Domain of un 36.7 58 0.0013 27.0 4.1 32 234-265 4-35 (83)
455 PF02388 FemAB: FemAB family; 36.6 2E+02 0.0044 30.4 9.4 58 208-269 240-297 (406)
456 PF03961 DUF342: Protein of un 36.5 2E+02 0.0044 30.8 9.5 30 245-274 375-404 (451)
457 PF05557 MAD: Mitotic checkpoi 35.7 1.8E+02 0.004 33.2 9.4 30 245-274 606-635 (722)
458 PF09325 Vps5: Vps5 C terminal 35.7 3.9E+02 0.0085 25.3 20.4 37 244-280 162-198 (236)
459 PF10205 KLRAQ: Predicted coil 35.3 3E+02 0.0064 23.8 9.4 38 147-184 30-67 (102)
460 PF04423 Rad50_zn_hook: Rad50 35.3 19 0.00042 26.9 1.0 12 55-66 22-33 (54)
461 PRK13729 conjugal transfer pil 35.2 1.6E+02 0.0034 32.2 8.1 49 225-273 70-118 (475)
462 KOG2231 Predicted E3 ubiquitin 34.9 27 0.00059 39.4 2.5 51 11-66 2-54 (669)
463 KOG4809 Rab6 GTPase-interactin 34.8 6.9E+02 0.015 27.9 20.4 49 245-294 521-569 (654)
464 KOG4367 Predicted Zn-finger pr 34.8 1.5E+02 0.0032 32.0 7.6 26 271-296 382-407 (699)
465 PF09744 Jnk-SapK_ap_N: JNK_SA 34.6 3.8E+02 0.0082 24.9 13.7 54 227-280 92-148 (158)
466 KOG0995 Centromere-associated 34.4 7E+02 0.015 27.9 25.8 10 10-19 137-146 (581)
467 KOG3990 Uncharacterized conser 34.3 1.7E+02 0.0036 29.3 7.5 59 211-270 226-285 (305)
468 PF05557 MAD: Mitotic checkpoi 33.8 47 0.001 38.0 4.3 9 256-264 521-529 (722)
469 PF04380 BMFP: Membrane fusoge 33.6 1.4E+02 0.003 24.3 5.9 39 228-266 39-78 (79)
470 PRK13182 racA polar chromosome 33.4 4.1E+02 0.009 25.0 11.2 65 207-271 82-151 (175)
471 cd00890 Prefoldin Prefoldin is 33.4 3.1E+02 0.0067 23.5 11.1 33 231-263 94-126 (129)
472 KOG2169 Zn-finger transcriptio 33.3 29 0.00063 39.2 2.5 52 8-67 305-359 (636)
473 PF07989 Microtub_assoc: Micro 33.3 2.6E+02 0.0056 22.6 8.5 18 253-270 44-61 (75)
474 PRK10929 putative mechanosensi 33.2 9.8E+02 0.021 29.2 22.0 21 250-270 213-233 (1109)
475 TIGR03545 conserved hypothetic 33.1 3.1E+02 0.0067 30.6 10.3 20 347-366 364-383 (555)
476 KOG1003 Actin filament-coating 33.0 4.6E+02 0.01 25.4 21.5 29 96-124 6-34 (205)
477 PF04728 LPP: Lipoprotein leuc 32.6 2.3E+02 0.005 21.8 7.1 35 232-266 4-38 (56)
478 PF04012 PspA_IM30: PspA/IM30 32.6 4.4E+02 0.0096 25.1 19.7 167 96-269 3-182 (221)
479 KOG2991 Splicing regulator [RN 32.4 5.4E+02 0.012 26.0 18.8 25 248-272 267-291 (330)
480 PHA02414 hypothetical protein 32.4 2E+02 0.0043 24.7 6.6 49 222-270 34-82 (111)
481 PF10018 Med4: Vitamin-D-recep 32.3 4.2E+02 0.009 24.9 9.8 36 244-279 28-63 (188)
482 KOG0982 Centrosomal protein Nu 32.2 6.8E+02 0.015 27.1 20.3 13 95-107 223-235 (502)
483 PRK05560 DNA gyrase subunit A; 32.2 7.2E+02 0.016 29.1 13.5 37 245-281 430-469 (805)
484 PF06156 DUF972: Protein of un 32.2 2.9E+02 0.0062 23.9 7.9 29 241-269 25-53 (107)
485 TIGR01061 parC_Gpos DNA topois 32.0 6.8E+02 0.015 29.0 13.1 39 245-283 427-468 (738)
486 COG3813 Uncharacterized protei 32.0 49 0.0011 26.8 2.8 49 11-67 7-55 (84)
487 PF01920 Prefoldin_2: Prefoldi 31.9 2.4E+02 0.0052 23.2 7.4 24 246-269 77-100 (106)
488 KOG1356 Putative transcription 31.9 9.6 0.00021 43.6 -1.6 55 10-67 230-285 (889)
489 PF09798 LCD1: DNA damage chec 31.6 3.7E+02 0.008 30.7 10.6 24 251-274 32-55 (654)
490 PRK13922 rod shape-determining 31.5 4.5E+02 0.0098 26.0 10.5 42 245-286 69-115 (276)
491 PF06906 DUF1272: Protein of u 31.4 71 0.0015 24.6 3.5 48 12-67 8-55 (57)
492 KOG0239 Kinesin (KAR3 subfamil 31.2 8.5E+02 0.018 27.9 15.6 143 137-294 169-314 (670)
493 TIGR03007 pepcterm_ChnLen poly 31.1 6.9E+02 0.015 26.8 21.6 174 90-270 164-373 (498)
494 PF08826 DMPK_coil: DMPK coile 31.1 2.6E+02 0.0056 21.8 9.8 61 105-165 1-61 (61)
495 PF06005 DUF904: Protein of un 31.1 2.8E+02 0.0061 22.3 9.9 62 219-280 6-70 (72)
496 TIGR02338 gimC_beta prefoldin, 30.9 3.4E+02 0.0073 23.2 12.7 102 144-264 4-107 (110)
497 KOG4571 Activating transcripti 30.7 2.3E+02 0.005 28.9 8.0 52 216-267 240-291 (294)
498 COG3352 FlaC Putative archaeal 30.7 3.7E+02 0.0081 24.9 8.6 67 209-275 71-138 (157)
499 KOG0804 Cytoplasmic Zn-finger 30.3 7.5E+02 0.016 27.0 17.6 165 126-317 325-491 (493)
500 PF06008 Laminin_I: Laminin Do 30.3 5.4E+02 0.012 25.3 22.2 172 87-280 17-188 (264)
No 1
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-21 Score=195.59 Aligned_cols=297 Identities=20% Similarity=0.160 Sum_probs=239.6
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCCCCcchhhhhccCCCCCCC-CC
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSNSIGDQIDLVISQKPKDPE-VE 87 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~~l~~l~~~l~~~~~~~~e-~~ 87 (466)
-..|.|| ..+.|..+++..+-.|||+||..|+.+|++++|. +..||.|+-.+...... ++..++.- .+
T Consensus 4 ~A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps--~R~cpic~ik~~~r~~~--------N~~~~d~vvEe 72 (465)
T KOG0827|consen 4 MAECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPS--NRGCPICQIKLQERHVA--------NPSTVDHVVEE 72 (465)
T ss_pred cceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCc--cCCCCceeecccceeee--------chhhhhhhhcc
Confidence 3589999 5555667788777779999999999999998774 37999999666555411 12222211 14
Q ss_pred ChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012292 88 DPEVSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECL 167 (466)
Q Consensus 88 ~~e~l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~ 167 (466)
++-....++.++.+++..........+.....+.+.+..+-++..+....+++++.++..+...|..+.+++.+...++.
T Consensus 73 ~~Vld~~~~K~~~gkvk~~~s~~~~~K~dn~e~~d~l~~t~e~~~a~vv~~~~al~ki~~~~~~Lk~~~~~l~q~~~et~ 152 (465)
T KOG0827|consen 73 SVVLDWDVGKKCGGKVKYSVSPGWPYKSDNLELQDLLGHTAEDTIAIVVGKIGALKKIVVYSGDLKEDFQDLKQFDPETL 152 (465)
T ss_pred chhhhHHHHHhhccchhhhcCcCCccccccHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHhhCHHHH
Confidence 55556667777777888777777777777777888888888888888899999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012292 168 KLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKL 247 (466)
Q Consensus 168 rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kL 247 (466)
+++++-.+++..++.++.++.+..+ ++...++..-..+.++.|.++|.+...+|+++-.+|+++.+...+...+|
T Consensus 153 ~lqE~~~~L~~~~~~~~~~~lls~~-----~~~~~~e~~~t~~~~~slv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL 227 (465)
T KOG0827|consen 153 ELQENPSDLLISHEYIFGAALLSIK-----CFFQTAEHWMTSQPTSSLVGSLSICFESLKQNYDKISAIVCGHIYHHGKL 227 (465)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhcCchHHHHhhhHhhHHHHHHHHHHHHHHhhcccchhhHH
Confidence 9999999999999999965554443 23333444456678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccchhHHhhhcCCCCCccccccccCChhhhhhccCCCcccccCC
Q 012292 248 EKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKKASQKEEILKGATEDNSISLCTNNVSLEDQREQHSVPIYNLDWT 327 (466)
Q Consensus 248 ek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (466)
+++-..+++|+..+.+|.+.-.+..+ +++++.++++...+ +..+ . .+....+++++++.+++|+..++.+
T Consensus 228 ~k~L~~~~kl~~~~rel~~~~~e~k~-A~~Dvq~~~ke~~~-lk~p-l-------tMl~~~~~~~~v~~~t~~~~~lE~~ 297 (465)
T KOG0827|consen 228 SKWLATKRKLPSCRRELPKNGFEEKL-AFFDVQRMGKEAEK-LKPP-L-------TMLEIDYREEHVKLSTSLKVELEKL 297 (465)
T ss_pred HHHHHHHHHhHHHHhhhhhhhHHHHH-HHHHHHhhhcchhh-cCCc-h-------HHHHHhccCccccccccCceeeccc
Confidence 99999999999999999999999888 89999999987765 3333 2 2467889999999999999999988
Q ss_pred CCCC
Q 012292 328 SRVT 331 (466)
Q Consensus 328 ~~~~ 331 (466)
+-+|
T Consensus 298 ~~~~ 301 (465)
T KOG0827|consen 298 GTLN 301 (465)
T ss_pred Ccce
Confidence 7655
No 2
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=99.50 E-value=5.3e-13 Score=136.99 Aligned_cols=56 Identities=27% Similarity=0.666 Sum_probs=45.7
Q ss_pred CCCCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 2 GIENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 2 ~~~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
++..-.+-++|||||+.+++. -.....+.|.|+||..|+..|+. .+||+||....+
T Consensus 168 ~~~~~tELPTCpVCLERMD~s-~~gi~t~~c~Hsfh~~cl~~w~~-------~scpvcR~~q~p 223 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSS-TTGILTILCNHSFHCSCLMKWWD-------SSCPVCRYCQSP 223 (493)
T ss_pred CCCCcccCCCcchhHhhcCcc-ccceeeeecccccchHHHhhccc-------CcChhhhhhcCc
Confidence 345556778999999999953 34455788999999999999966 899999998773
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.15 E-value=1.9e-11 Score=88.06 Aligned_cols=41 Identities=37% Similarity=0.899 Sum_probs=29.9
Q ss_pred ccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCc
Q 012292 12 CSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVC 59 (466)
Q Consensus 12 CpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~C 59 (466)
||||+++|. |+ +++|||+||..||.+|+.... +....||.|
T Consensus 1 CpiC~~~~~~Pv------~l~CGH~FC~~Cl~~~~~~~~-~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPV------SLPCGHSFCRSCLERLWKEPS-GSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEE------E-SSSSEEEHHHHHHHHCCSS-SST---SSS
T ss_pred CCccchhhCCcc------ccCCcCHHHHHHHHHHHHccC-CcCCCCcCC
Confidence 899999999 65 899999999999999987432 223789998
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.13 E-value=1.9e-11 Score=88.53 Aligned_cols=43 Identities=40% Similarity=1.100 Sum_probs=35.4
Q ss_pred ccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcC
Q 012292 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR 60 (466)
.|+||++.|.+ ......++|||.||..||..|+. .+.+||+||
T Consensus 2 ~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~~~~-----~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED--GEKVVKLPCGHVFHRSCIKEWLK-----RNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT--TSCEEEETTSEEEEHHHHHHHHH-----HSSB-TTTH
T ss_pred CCcCCChhhcC--CCeEEEccCCCeeCHHHHHHHHH-----hCCcCCccC
Confidence 69999999974 23445788999999999999999 457999997
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.04 E-value=1.5e-10 Score=108.82 Aligned_cols=55 Identities=31% Similarity=0.840 Sum_probs=44.3
Q ss_pred CCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcC-----------CCCCCCCcCcCccccCCC
Q 012292 7 FGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCS-----------SSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 7 ~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~-----------~~~s~~CP~CR~~~~~~~ 67 (466)
.+++.|+||++.+. |+ +++|||+||+.||..|+.... ......||+||..++...
T Consensus 16 ~~~~~CpICld~~~dPV------vT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 16 GGDFDCNICLDQVRDPV------VTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CCccCCccCCCcCCCcE------EcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 45789999999998 53 789999999999999986321 123578999999998765
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.8e-10 Score=111.80 Aligned_cols=52 Identities=31% Similarity=0.822 Sum_probs=44.0
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
-......|.+||+... |+ .+||||.||+.||..|.. ....||+||..+.+..
T Consensus 235 i~~a~~kC~LCLe~~~~pS------aTpCGHiFCWsCI~~w~~-----ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPS------ATPCGHIFCWSCILEWCS-----EKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCCceEEEecCCCCCC------cCcCcchHHHHHHHHHHc-----cccCCCcccccCCCcc
Confidence 3445678999999996 65 789999999999999988 4566999999998764
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.94 E-value=5.6e-10 Score=78.89 Aligned_cols=38 Identities=45% Similarity=1.270 Sum_probs=31.7
Q ss_pred ccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCc
Q 012292 12 CSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVC 59 (466)
Q Consensus 12 CpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~C 59 (466)
|+||++.+. |+ ..++|||+||..|+.+|++ ....||.|
T Consensus 1 C~iC~~~~~~~~-----~~~~CGH~fC~~C~~~~~~-----~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPV-----VVTPCGHSFCKECIEKYLE-----KNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEE-----EECTTSEEEEHHHHHHHHH-----CTSB-TTT
T ss_pred CCCCCCcccCcC-----EECCCCCchhHHHHHHHHH-----CcCCCcCC
Confidence 899999997 52 4799999999999999999 46899998
No 8
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=7.6e-10 Score=101.87 Aligned_cols=54 Identities=30% Similarity=0.784 Sum_probs=44.8
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
......|||||+.+. +.+++.+.|||+||..||...+. ....||+||+.++.+.
T Consensus 128 ~~~~~~CPiCl~~~s---ek~~vsTkCGHvFC~~Cik~alk-----~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVS---EKVPVSTKCGHVFCSQCIKDALK-----NTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccccCCCceecchh---hccccccccchhHHHHHHHHHHH-----hCCCCCCcccccchhh
Confidence 345578999999995 34445789999999999999988 6799999999887654
No 9
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.90 E-value=1.1e-09 Score=106.96 Aligned_cols=54 Identities=33% Similarity=0.724 Sum_probs=41.8
Q ss_pred CCCccccccccccc-ccc-c-CcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 7 FGKTICSICYEDLK-PIV-E-DLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 7 ~~eltCpICLe~f~-P~~-~-~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
..+..|+||++.+. +.. . ....+++|||+||..||.+|+. ...+||+||.++..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-----~~~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-----EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-----cCCCCCCCCCEeeE
Confidence 34689999999876 210 0 1234678999999999999998 57899999998763
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.89 E-value=1.2e-09 Score=81.31 Aligned_cols=46 Identities=35% Similarity=0.936 Sum_probs=38.7
Q ss_pred CcccccccccccccccCcceeecCCCc-ccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHV-FHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHs-FC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
+..|+||++....+ .+.||||. ||..|+.+|+. ....||+||.++.
T Consensus 2 ~~~C~iC~~~~~~~-----~~~pCgH~~~C~~C~~~~~~-----~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDV-----VLLPCGHLCFCEECAERLLK-----RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSE-----EEETTCEEEEEHHHHHHHHH-----TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCce-----EEeCCCChHHHHHHhHHhcc-----cCCCCCcCChhhc
Confidence 56899999998743 47899999 99999999998 6799999999875
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1e-09 Score=105.03 Aligned_cols=54 Identities=37% Similarity=0.813 Sum_probs=45.7
Q ss_pred CCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 6 KFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 6 ~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.-....|.||||.-. |+ ++.|||.||+.||.+|+...+ ++..||+|+..++...
T Consensus 44 ~~~~FdCNICLd~akdPV------vTlCGHLFCWpClyqWl~~~~--~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPV------VTLCGHLFCWPCLYQWLQTRP--NSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccccCCCE------EeecccceehHHHHHHHhhcC--CCeeCCccccccccce
Confidence 345678999999998 64 789999999999999999643 5788999999998665
No 12
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.87 E-value=1.5e-09 Score=83.95 Aligned_cols=48 Identities=25% Similarity=0.538 Sum_probs=41.4
Q ss_pred Cccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 9 KTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
++.||||.+.+. |+ +++|||+||..||..|+. ....||.|+.+++..+
T Consensus 1 ~~~Cpi~~~~~~~Pv------~~~~G~v~~~~~i~~~~~-----~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 1 EFLCPISLEVMKDPV------ILPSGQTYERRAIEKWLL-----SHGTDPVTGQPLTHED 49 (63)
T ss_pred CcCCcCCCCcCCCCE------ECCCCCEEeHHHHHHHHH-----HCCCCCCCcCCCChhh
Confidence 468999999998 54 789999999999999998 3578999999886554
No 13
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=1.9e-07 Score=93.87 Aligned_cols=54 Identities=24% Similarity=0.567 Sum_probs=39.9
Q ss_pred CCccccccccc--ccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYED--LKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~--f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
++..||||... +.|. ....+.+|||.||.+|+..+|.. +...||.|+.++....
T Consensus 2 d~~~CP~Ck~~~y~np~--~kl~i~~CGH~~C~sCv~~l~~~----~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPS--LKLMVNVCGHTLCESCVDLLFVR----GSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcc--cccccCCCCCcccHHHHHHHhcC----CCCCCCCCCCccchhh
Confidence 35689999995 3342 22233489999999999997652 4568999999888665
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=98.81 E-value=2.8e-09 Score=101.51 Aligned_cols=59 Identities=24% Similarity=0.652 Sum_probs=42.8
Q ss_pred CCCccccccccccc-c--ccc-CcceeecCCCcccHHHHHHHHHhc-CCCCCCCCcCcCccccC
Q 012292 7 FGKTICSICYEDLK-P--IVE-DLQVISICGHVFHELCLQQWFEYC-SSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 7 ~~eltCpICLe~f~-P--~~~-~~~~llpCGHsFC~~CL~~wle~~-~~~~s~~CP~CR~~~~~ 65 (466)
..+..|+||++... + ..+ .-..+.+|+|+||..||..|.... ..+....||.||..+..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 34689999999864 1 111 123467899999999999998843 22346789999998763
No 15
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=2.9e-09 Score=110.85 Aligned_cols=50 Identities=26% Similarity=0.717 Sum_probs=42.5
Q ss_pred CCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 6 KFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 6 ~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
....+.|+||++.|. |+ +++|||+||..||..|+. ....||+||..+...
T Consensus 23 Le~~l~C~IC~d~~~~Pv------itpCgH~FCs~CI~~~l~-----~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPV------LTSCSHTFCSLCIRRCLS-----NQPKCPLCRAEDQES 73 (397)
T ss_pred cccccCCCcCchhhhCcc------CCCCCCchhHHHHHHHHh-----CCCCCCCCCCccccc
Confidence 445689999999998 64 789999999999999998 446899999988643
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.77 E-value=5.3e-09 Score=74.32 Aligned_cols=41 Identities=39% Similarity=1.021 Sum_probs=34.7
Q ss_pred cccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCc
Q 012292 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVC 59 (466)
Q Consensus 12 CpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~C 59 (466)
|+||++.+... ..+++|||.||..|+..|+.. .....||.|
T Consensus 1 C~iC~~~~~~~----~~~~~C~H~fC~~C~~~~~~~---~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP----VILLPCGHSFCRDCLRKWLEN---SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE----EEETTTSEEEEHHHHHHHHHH---TSSSBTTTT
T ss_pred CCcCCccccCC----CEEecCCCcchHHHHHHHHHh---cCCccCCcC
Confidence 89999999832 147999999999999999985 367889998
No 17
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.77 E-value=6.3e-09 Score=83.82 Aligned_cols=46 Identities=43% Similarity=0.993 Sum_probs=35.1
Q ss_pred ccccccccccc-c-------cccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcC
Q 012292 10 TICSICYEDLK-P-------IVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60 (466)
Q Consensus 10 ltCpICLe~f~-P-------~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR 60 (466)
-.|+||++.|. + ..+......+|||.||..||.+|+. ...+||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-----QNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-----TSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-----cCCcCCCCC
Confidence 35999999994 2 1123345678999999999999999 567999998
No 18
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.75 E-value=6.9e-09 Score=73.64 Aligned_cols=44 Identities=41% Similarity=1.116 Sum_probs=36.0
Q ss_pred cccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccc
Q 012292 11 ICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 11 tCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~ 63 (466)
.|+||++.+. +. .+.+|||.||..|+..|+.. +...||.||..+
T Consensus 1 ~C~iC~~~~~~~~-----~~~~C~H~~c~~C~~~~~~~----~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPV-----VLLPCGHVFCRSCIDKWLKS----GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCce-----EecCCCChhcHHHHHHHHHh----CcCCCCCCCCcC
Confidence 5999999984 33 45669999999999999983 467899999753
No 19
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.69 E-value=4.1e-09 Score=105.23 Aligned_cols=48 Identities=33% Similarity=0.863 Sum_probs=43.2
Q ss_pred Cccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 9 KTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
-+.|.||.++|. |. ++||||+||..||..++. ....||.|+.+++...
T Consensus 23 lLRC~IC~eyf~ip~------itpCsHtfCSlCIR~~L~-----~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPM------ITPCSHTFCSLCIRKFLS-----YKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHhHHHHHhcCce------eccccchHHHHHHHHHhc-----cCCCCCceecccchhh
Confidence 468999999998 64 899999999999999999 5788999999998775
No 20
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.69 E-value=1.3e-08 Score=73.67 Aligned_cols=43 Identities=35% Similarity=0.779 Sum_probs=24.2
Q ss_pred cccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCc
Q 012292 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCP 57 (466)
Q Consensus 12 CpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP 57 (466)
||||.+ |.. .++.+++++|||+||..||.+|+.... .+...||
T Consensus 1 CpIc~e-~~~-~~n~P~~L~CGH~~c~~cl~~l~~~~~-~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FST-EENPPMVLPCGHVFCKDCLQKLSKKSD-RNRFKCP 43 (43)
T ss_dssp -TTT-----T-TSS-EEE-SSS-EEEHHHHHHHHHH-S--S-B--T
T ss_pred CCcccc-ccC-CCCCCEEEeCccHHHHHHHHHHHhcCC-CCeeeCc
Confidence 999999 753 246667899999999999999988421 2567887
No 21
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=9.1e-09 Score=108.10 Aligned_cols=53 Identities=30% Similarity=0.896 Sum_probs=45.0
Q ss_pred Cccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 9 KTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
+..|||||+... |. .+.|||.||..||.++|.+..-.+-..||.||..++.++
T Consensus 186 ~~~CPICL~~~~~p~------~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPV------RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCccc------ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 789999999987 54 677999999999999988653445678999999999865
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.67 E-value=1.3e-08 Score=73.84 Aligned_cols=44 Identities=36% Similarity=0.938 Sum_probs=36.4
Q ss_pred ccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
.|+||++.|. .+..+.+++|||+||..|+..+.. ....||+||+
T Consensus 1 ~C~~C~~~~~--~~~~~~l~~CgH~~C~~C~~~~~~-----~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS--EERRPRLTSCGHIFCEKCLKKLKG-----KSVKCPICRK 44 (44)
T ss_pred CCcCcCcccc--CCCCeEEcccCCHHHHHHHHhhcC-----CCCCCcCCCC
Confidence 4999999994 234467899999999999999862 5789999985
No 23
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.9e-08 Score=101.68 Aligned_cols=53 Identities=30% Similarity=0.810 Sum_probs=43.4
Q ss_pred CCCccccccccccc-ccc-------cCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 7 FGKTICSICYEDLK-PIV-------EDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 7 ~~eltCpICLe~f~-P~~-------~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.++-+|.||+|.+. |.. +..++-+||||.||..|+..|++ +..+||.||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-----RqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-----RQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-----hccCCCcccCccc
Confidence 45779999999965 321 13467899999999999999999 7899999999954
No 24
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.3e-08 Score=101.92 Aligned_cols=52 Identities=35% Similarity=0.818 Sum_probs=43.0
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.+|.||+|.|.+ +++..++||+|.||..||..|+.. ....||+|+..+....
T Consensus 230 ~~CaIClEdY~~--GdklRiLPC~H~FH~~CIDpWL~~----~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLEDYEK--GDKLRILPCSHKFHVNCIDPWLTQ----TRTFCPVCKRDIRTDS 281 (348)
T ss_pred ceEEEeeccccc--CCeeeEecCCCchhhccchhhHhh----cCccCCCCCCcCCCCC
Confidence 499999999984 356668999999999999999993 3456999999776554
No 25
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.51 E-value=3.5e-08 Score=96.89 Aligned_cols=47 Identities=32% Similarity=0.771 Sum_probs=41.1
Q ss_pred Cccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 9 KTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
.+.|-||-+.|. |. .++|||+||+.||.+++. ....||+||..+...
T Consensus 25 ~lrC~IC~~~i~ip~------~TtCgHtFCslCIR~hL~-----~qp~CP~Cr~~~~es 72 (391)
T COG5432 25 MLRCRICDCRISIPC------ETTCGHTFCSLCIRRHLG-----TQPFCPVCREDPCES 72 (391)
T ss_pred HHHhhhhhheeecce------ecccccchhHHHHHHHhc-----CCCCCccccccHHhh
Confidence 368999999998 64 899999999999999998 678899999987644
No 26
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=5.8e-08 Score=95.96 Aligned_cols=52 Identities=27% Similarity=0.685 Sum_probs=44.1
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
....|.||+..|.- .+....+||.|.||..|+..|+- +.+..||+||.++++
T Consensus 322 ~GveCaICms~fiK--~d~~~vlPC~H~FH~~Cv~kW~~----~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIK--NDRLRVLPCDHRFHVGCVDKWLL----GYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcc--cceEEEeccCceechhHHHHHHh----hhcccCCccCCCCCC
Confidence 45789999999973 34567899999999999999988 367899999999875
No 27
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.51 E-value=1e-07 Score=65.24 Aligned_cols=39 Identities=46% Similarity=1.182 Sum_probs=32.5
Q ss_pred cccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCc
Q 012292 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVC 59 (466)
Q Consensus 12 CpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~C 59 (466)
|+||++..... ..++|||.||..|+..|+. .....||.|
T Consensus 1 C~iC~~~~~~~-----~~~~C~H~~c~~C~~~~~~----~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDP-----VVLPCGHTFCRSCIRKWLK----SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCc-----EEecCCChHHHHHHHHHHH----hCcCCCCCC
Confidence 89999996532 4789999999999999988 256789987
No 28
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.5e-08 Score=95.35 Aligned_cols=46 Identities=35% Similarity=0.779 Sum_probs=39.5
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
..+.++||||++.|... .+++|||+||..|+..++. ....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p-----~~l~C~H~~c~~C~~~~~~-----~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP-----VLLPCGHNFCRACLTRSWE-----GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC-----ccccccchHhHHHHHHhcC-----CCcCCcccCC
Confidence 45789999999999832 4889999999999999877 4589999994
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9.2e-08 Score=93.26 Aligned_cols=51 Identities=29% Similarity=0.742 Sum_probs=41.2
Q ss_pred CCCccccccccccc-ccccCcceeecCCCcccHHHHHH-HHHhcCCCCCCCCcCcCccccCCC
Q 012292 7 FGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQ-WFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 7 ~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~-wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
..+.-|+||++... |+ .++|||+||+.||.. |-.. ....||+||+.+.+..
T Consensus 213 ~~d~kC~lC~e~~~~ps------~t~CgHlFC~~Cl~~~~t~~----k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPS------CTPCGHLFCLSCLLISWTKK----KYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcc------cccccchhhHHHHHHHHHhh----ccccCchhhhhccchh
Confidence 45678999999987 64 789999999999999 7551 3455999999887654
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.45 E-value=9.8e-08 Score=76.80 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=39.0
Q ss_pred CCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
+.+.||||.+.|. |+ +++|||+|+..||..|+.. +...||+|+.+++...
T Consensus 3 ~~f~CpIt~~lM~dPV------i~~~G~tyer~~I~~~l~~----~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 3 DEFLCPITGELMRDPV------ILPSGHTYERSAIERWLEQ----NGGTDPFTRQPLSESD 53 (73)
T ss_dssp GGGB-TTTSSB-SSEE------EETTSEEEEHHHHHHHHCT----TSSB-TTT-SB-SGGG
T ss_pred cccCCcCcCcHhhCce------eCCcCCEEcHHHHHHHHHc----CCCCCCCCCCcCCccc
Confidence 4679999999999 65 8999999999999999993 4799999999888654
No 31
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.40 E-value=2.5e-07 Score=76.14 Aligned_cols=55 Identities=31% Similarity=0.704 Sum_probs=41.0
Q ss_pred CCccccccccccc---cc-----ccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 8 GKTICSICYEDLK---PI-----VEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 8 ~eltCpICLe~f~---P~-----~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.+-.|+||.-.|+ |. .+-....-.|+|.||..||.+|+.... ....||.||+++.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~--~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS--SKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc--CCCCCCCcCCeee
Confidence 3668999998887 21 112334567999999999999999532 3579999999875
No 32
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.4e-07 Score=101.63 Aligned_cols=51 Identities=35% Similarity=0.771 Sum_probs=43.8
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
+-++||+|...+.+. .++.|||+||+.|+...+++ +...||.|...|+..+
T Consensus 642 ~~LkCs~Cn~R~Kd~-----vI~kC~H~FC~~Cvq~r~et----RqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA-----VITKCGHVFCEECVQTRYET----RQRKCPKCNAAFGAND 692 (698)
T ss_pred hceeCCCccCchhhH-----HHHhcchHHHHHHHHHHHHH----hcCCCCCCCCCCCccc
Confidence 358999999888754 47889999999999998885 6799999999998765
No 33
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.25 E-value=2e-07 Score=72.50 Aligned_cols=47 Identities=32% Similarity=0.815 Sum_probs=25.1
Q ss_pred Cccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 9 KTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
-+.|++|.+.++ |+ .+..|.|+||..|+...+. ..||+|+.+....+
T Consensus 7 lLrCs~C~~~l~~pv-----~l~~CeH~fCs~Ci~~~~~-------~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 7 LLRCSICFDILKEPV-----CLGGCEHIFCSSCIRDCIG-------SECPVCHTPAWIQD 54 (65)
T ss_dssp TTS-SSS-S--SS-B--------SSS--B-TTTGGGGTT-------TB-SSS--B-S-SS
T ss_pred hcCCcHHHHHhcCCc-----eeccCccHHHHHHhHHhcC-------CCCCCcCChHHHHH
Confidence 468999999999 75 5789999999999987544 46999999987665
No 34
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.2e-07 Score=97.96 Aligned_cols=52 Identities=37% Similarity=0.867 Sum_probs=42.9
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.+..|+||.|.+.......+..++|||.||..|+..|++ ...+||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-----r~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-----RQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHH-----HhCcCCcchhhhh
Confidence 467999999999831224456899999999999999999 6899999999443
No 35
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.2e-06 Score=88.66 Aligned_cols=55 Identities=25% Similarity=0.429 Sum_probs=44.5
Q ss_pred CCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
+.+.++.|||||+++.-+ ..+..|+|-||..||...+.. +...||.||+.+....
T Consensus 39 ~~~~~v~c~icl~llk~t----mttkeClhrfc~~ci~~a~r~----gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKT----MTTKECLHRFCFDCIWKALRS----GNNECPTCRKKLVSKR 93 (381)
T ss_pred HhhhhhccHHHHHHHHhh----cccHHHHHHHHHHHHHHHHHh----cCCCCchHHhhccccc
Confidence 346678999999999833 235679999999999877763 6789999999988765
No 36
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.88 E-value=0.00021 Score=69.39 Aligned_cols=50 Identities=28% Similarity=0.598 Sum_probs=38.4
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
++..|..|.-.-. .+..+++.|+|+||..|.... ....||.|+.++....
T Consensus 2 ~~VhCn~C~~~~~---~~~f~LTaC~HvfC~~C~k~~-------~~~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 2 DFVHCNKCFRFPS---QDPFFLTACRHVFCEPCLKAS-------SPDVCPLCKKSIRIIQ 51 (233)
T ss_pred ceEEeccccccCC---CCceeeeechhhhhhhhcccC-------Cccccccccceeeeee
Confidence 4578998876643 577789999999999997653 2248999999976554
No 37
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=6e-06 Score=82.02 Aligned_cols=50 Identities=32% Similarity=0.651 Sum_probs=41.5
Q ss_pred CCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 7 FGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 7 ~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
.-...|+||+.... |+ .++|+|.||+.||...... +..+||+||.+++..
T Consensus 5 ~~~~eC~IC~nt~n~Pv------~l~C~HkFCyiCiKGsy~n----dk~~CavCR~pids~ 55 (324)
T KOG0824|consen 5 TKKKECLICYNTGNCPV------NLYCFHKFCYICIKGSYKN----DKKTCAVCRFPIDST 55 (324)
T ss_pred ccCCcceeeeccCCcCc------cccccchhhhhhhcchhhc----CCCCCceecCCCCcc
Confidence 34568999999987 75 7899999999999985441 567899999999866
No 38
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=6.5e-06 Score=80.51 Aligned_cols=61 Identities=30% Similarity=0.775 Sum_probs=46.9
Q ss_pred CCCCCCccccccccccc-ccccC----cceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 4 ENKFGKTICSICYEDLK-PIVED----LQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~-P~~~~----~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
+-..++..|.||-..++ .+++. ....+.|+|+||.-||..|-- -++..+||.|+..+....
T Consensus 219 tkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWci---vGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 219 TKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCI---VGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhee---ecCCCCCchHHHHhhHhh
Confidence 34556789999999987 22111 234689999999999999944 457899999999998765
No 39
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=9.3e-06 Score=85.07 Aligned_cols=53 Identities=30% Similarity=0.728 Sum_probs=40.1
Q ss_pred Cccccccccccc---cccc--Cc-------ceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 9 KTICSICYEDLK---PIVE--DL-------QVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 9 eltCpICLe~f~---P~~~--~~-------~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
..-|+||+..++ ..+. .. -.++||.|.||..||.+|.+. .+..||+||.++++
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~----ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT----YKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh----hcccCCccCCCCCC
Confidence 457999999886 1111 01 245799999999999999993 46799999998864
No 40
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.72 E-value=1.1e-05 Score=64.56 Aligned_cols=57 Identities=35% Similarity=0.651 Sum_probs=26.4
Q ss_pred CcccccccccccccccCccee---ecCCCcccHHHHHHHHHhcCCCC------CCCCcCcCccccC
Q 012292 9 KTICSICYEDLKPIVEDLQVI---SICGHVFHELCLQQWFEYCSSSK------KCTCPVCKQRCSS 65 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~l---lpCGHsFC~~CL~~wle~~~~~~------s~~CP~CR~~~~~ 65 (466)
+..|+||+..+.+..+....+ ..|++.||..||..|+...+.++ ...||.|+.+++-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 568999999865111111112 36999999999999998543322 2359999998753
No 41
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=8.5e-05 Score=76.57 Aligned_cols=56 Identities=27% Similarity=0.726 Sum_probs=44.9
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
...+||||++.+.-+.++....+.|||.|-..||++|+. ......||.|....+.+
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~---k~~~~~cp~c~~katkr 58 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG---KKTKMQCPLCSGKATKR 58 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHh---hhhhhhCcccCChhHHH
Confidence 356999999999933577777899999999999999995 23467899997655544
No 42
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.62 E-value=4.5e-05 Score=61.62 Aligned_cols=51 Identities=29% Similarity=0.689 Sum_probs=37.7
Q ss_pred ccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+||-|.--++|..+.+..---|.|.||..||.+|+. ....||.||+++...
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~-----Tk~~CPld~q~w~~~ 83 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLD-----TKGVCPLDRQTWVLA 83 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHh-----hCCCCCCCCceeEEe
Confidence 455555544443444455667999999999999999 468899999987643
No 43
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4.7e-05 Score=79.73 Aligned_cols=50 Identities=26% Similarity=0.713 Sum_probs=42.6
Q ss_pred CCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 6 KFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 6 ~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
...++.|.||+..+- |+ .+||||+||..||.+.+. ....||.||..+...
T Consensus 81 ~~sef~c~vc~~~l~~pv------~tpcghs~c~~Cl~r~ld-----~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPV------VTPCGHSFCLECLDRSLD-----QETECPLCRDELVEL 131 (398)
T ss_pred ccchhhhhhhHhhcCCCc------cccccccccHHHHHHHhc-----cCCCCcccccccccc
Confidence 356789999999998 54 679999999999999766 678999999988754
No 44
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.48 E-value=3.5e-05 Score=85.90 Aligned_cols=55 Identities=33% Similarity=0.821 Sum_probs=41.3
Q ss_pred CCCcccccccccccccccCcc--eeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 7 FGKTICSICYEDLKPIVEDLQ--VISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~--~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.+.-.|+||+..+.-+.+.+| .+..|.|-||..|+-.|+.. +++.+||.||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~S---s~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFAS---SARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHh---cCCCCCCccccccc
Confidence 345689999998872222221 24569999999999999994 46789999998775
No 45
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=8.2e-05 Score=73.23 Aligned_cols=50 Identities=30% Similarity=0.703 Sum_probs=40.1
Q ss_pred CCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 7 FGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 7 ~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
..+.+||+|-+.-. |- .+.+|||.||+.|+..-..+ +.+.+||.|..++.
T Consensus 237 t~~~~C~~Cg~~PtiP~-----~~~~C~HiyCY~Ci~ts~~~---~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPH-----VIGKCGHIYCYYCIATSRLW---DASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCe-----eeccccceeehhhhhhhhcc---hhhcccCccCCCCc
Confidence 45789999999876 53 56779999999999986553 25689999988876
No 46
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.43 E-value=3.8e-05 Score=77.41 Aligned_cols=53 Identities=23% Similarity=0.510 Sum_probs=43.6
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.....+|.+|-.+|.++ -.++-|-|+||.+||..+++ ....||.|...+....
T Consensus 12 ~n~~itC~LC~GYliDA----TTI~eCLHTFCkSCivk~l~-----~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDA----TTITECLHTFCKSCIVKYLE-----ESKYCPTCDIVIHKTH 64 (331)
T ss_pred cccceehhhccceeecc----hhHHHHHHHHHHHHHHHHHH-----HhccCCccceeccCcc
Confidence 44568999999999832 14677999999999999999 4789999998887664
No 47
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=7.1e-05 Score=76.95 Aligned_cols=60 Identities=27% Similarity=0.550 Sum_probs=41.2
Q ss_pred CCCccccccccccccc--ccCccee-ecCCCcccHHHHHHHHHhcC--CCCCCCCcCcCccccCC
Q 012292 7 FGKTICSICYEDLKPI--VEDLQVI-SICGHVFHELCLQQWFEYCS--SSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 7 ~~eltCpICLe~f~P~--~~~~~~l-lpCGHsFC~~CL~~wle~~~--~~~s~~CP~CR~~~~~~ 66 (466)
..+-+|.||++..... ......+ ++|.|.||..||..|-.... ..-+..||.||......
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 3467999999998721 1111222 56999999999999975321 12268999999876543
No 48
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.40 E-value=9e-05 Score=56.90 Aligned_cols=47 Identities=26% Similarity=0.554 Sum_probs=31.0
Q ss_pred CCCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcC
Q 012292 4 ENKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPV 58 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~ 58 (466)
+.....+.|||.+..|. |+ ....|||+|....|.+|+. ..+...||+
T Consensus 6 ~~~~~~~~CPiT~~~~~~PV-----~s~~C~H~fek~aI~~~i~---~~~~~~CPv 53 (57)
T PF11789_consen 6 EGGTISLKCPITLQPFEDPV-----KSKKCGHTFEKEAILQYIQ---RNGSKRCPV 53 (57)
T ss_dssp -SSB--SB-TTTSSB-SSEE-----EESSS--EEEHHHHHHHCT---TTS-EE-SC
T ss_pred eccEeccCCCCcCChhhCCc-----CcCCCCCeecHHHHHHHHH---hcCCCCCCC
Confidence 34455789999999998 75 4568999999999999984 236789998
No 49
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=8.2e-05 Score=55.95 Aligned_cols=47 Identities=28% Similarity=0.657 Sum_probs=36.3
Q ss_pred CcccccccccccccccCcceeecCCCc-ccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHV-FHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHs-FC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
...|.||++--.++ .+..|||. .|+.|-.+.+. +....||.||.++.
T Consensus 7 ~dECTICye~pvds-----VlYtCGHMCmCy~Cg~rl~~----~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS-----VLYTCGHMCMCYACGLRLKK----ALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH-----HHHHcchHHhHHHHHHHHHH----ccCCcCcchhhHHH
Confidence 47899999987533 36789995 59999777655 26789999999864
No 50
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=6.8e-05 Score=60.12 Aligned_cols=53 Identities=30% Similarity=0.758 Sum_probs=38.6
Q ss_pred ccccccccccc---cc----ccCcc-eeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 10 TICSICYEDLK---PI----VEDLQ-VISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 10 ltCpICLe~f~---P~----~~~~~-~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.+|.||.-.|+ |. .++.+ ..--|.|.||..||..|+.... ....||.||+.+.
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~t--sq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPT--SQGQCPMCRQTWQ 81 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCcc--ccccCCcchheeE
Confidence 38999988886 21 12222 2345999999999999998532 4578999999765
No 51
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.27 E-value=0.00026 Score=52.65 Aligned_cols=44 Identities=32% Similarity=0.798 Sum_probs=32.7
Q ss_pred ccccccccccccccCcceeecCC-----CcccHHHHHHHHHhcCCCCCCCCcCcC
Q 012292 11 ICSICYEDLKPIVEDLQVISICG-----HVFHELCLQQWFEYCSSSKKCTCPVCK 60 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCG-----HsFC~~CL~~wle~~~~~~s~~CP~CR 60 (466)
.|-||++...+ ..+.+.||. |.||..||.+|+... +...||+|+
T Consensus 1 ~CrIC~~~~~~---~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~---~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDE---GDPLVSPCRCKGSLKYVHQECLERWINES---GNKTCEICK 49 (49)
T ss_pred CccCCCCCCCC---CCeeEeccccCCchhHHHHHHHHHHHHHc---CCCcCCCCC
Confidence 48999983322 223467985 899999999999842 456999995
No 52
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.24 E-value=0.0001 Score=69.33 Aligned_cols=46 Identities=33% Similarity=0.816 Sum_probs=37.8
Q ss_pred Cccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 9 KTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
.+.|.||-..|. |+ .+.|||.||..|..+-++ ....|-+|.+....
T Consensus 196 PF~C~iCKkdy~spv------vt~CGH~FC~~Cai~~y~-----kg~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPV------VTECGHSFCSLCAIRKYQ-----KGDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchh------hhhcchhHHHHHHHHHhc-----cCCcceecchhhcc
Confidence 358999999998 75 789999999999887655 67899999775543
No 53
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.19 E-value=0.00047 Score=73.08 Aligned_cols=58 Identities=28% Similarity=0.653 Sum_probs=45.9
Q ss_pred CCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+...+...|.+|-+.-.+. ....|.|.||..|+..++.....+.+.+||+|...++..
T Consensus 531 ~enk~~~~C~lc~d~aed~-----i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDY-----IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccccCceeecccCChhhhh-----HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 4456678999999987622 257899999999999998865556679999998877643
No 54
>PRK02224 chromosome segregation protein; Provisional
Probab=97.17 E-value=0.11 Score=60.21 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=11.9
Q ss_pred CCCCcCcCccccCCC
Q 012292 53 KCTCPVCKQRCSSSN 67 (466)
Q Consensus 53 s~~CP~CR~~~~~~~ 67 (466)
...||+|..++....
T Consensus 451 ~~~Cp~C~r~~~~~~ 465 (880)
T PRK02224 451 AGKCPECGQPVEGSP 465 (880)
T ss_pred cccCCCCCCcCCCcc
Confidence 468999999887654
No 55
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.03 E-value=0.00018 Score=79.19 Aligned_cols=56 Identities=20% Similarity=0.352 Sum_probs=42.3
Q ss_pred CCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
+.+..-.||+|+..+..- -...-.+|+|.||..||..|-. ...+||+||..|....
T Consensus 119 ~~~~~~~CP~Ci~s~~Dq--L~~~~k~c~H~FC~~Ci~sWsR-----~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 119 QTHVENQCPNCLKSCNDQ--LEESEKHTAHYFCEECVGSWSR-----CAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhhhhHHHHHHHHH--hhccccccccccHHHHhhhhhh-----hcccCchhhhhhheee
Confidence 346667899999887610 1112368999999999999977 5789999999887654
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.89 E-value=0.00045 Score=72.70 Aligned_cols=52 Identities=31% Similarity=0.735 Sum_probs=43.4
Q ss_pred CCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 6 KFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 6 ~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
....+.|++|...+. |+ ..+.|||.||..|+..|+. ....||.|+.......
T Consensus 18 ~~~~l~C~~C~~vl~~p~-----~~~~cgh~fC~~C~~~~~~-----~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPV-----QTTTCGHRFCAGCLLESLS-----NHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCC-----CCCCCCCcccccccchhhc-----cCcCCcccccccchhh
Confidence 456799999999998 53 1258999999999999988 4789999998887665
No 57
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.88 E-value=0.00042 Score=71.32 Aligned_cols=50 Identities=32% Similarity=0.805 Sum_probs=40.8
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
..|-||-+-=.++ .+-||||..|..||..|-.. +...+||+||..+....
T Consensus 370 eLCKICaendKdv-----kIEPCGHLlCt~CLa~WQ~s---d~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAENDKDV-----KIEPCGHLLCTSCLAAWQDS---DEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccCCCc-----ccccccchHHHHHHHhhccc---CCCCCCCceeeEecccc
Confidence 4799999876554 57899999999999999652 24789999999987665
No 58
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.86 E-value=0.26 Score=58.19 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
.+..+...++.+.++.......+.++..++..++..+..++..+..
T Consensus 442 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~ 487 (1164)
T TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444444444444444444444433
No 59
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.83 E-value=0.24 Score=60.05 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=20.2
Q ss_pred ccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 36 FHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 36 FC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
....++..+++.........||+|...|....
T Consensus 660 ~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~ee 691 (1311)
T TIGR00606 660 GATAVYSQFITQLTDENQSCCPVCQRVFQTEA 691 (1311)
T ss_pred HHHHHHHHHHHHHhhccCCcCCCCCCCCCChh
Confidence 34455666655321124679999999998664
No 60
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.73 E-value=0.2 Score=56.63 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012292 245 EKLEKAKEKINKLKTRVQE 263 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~e 263 (466)
..+.+-+.||.+||.++.+
T Consensus 636 ~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 636 GQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 61
>PRK11637 AmiB activator; Provisional
Probab=96.69 E-value=1.1 Score=47.79 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 012292 92 SRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTL 164 (466)
Q Consensus 92 l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklke 164 (466)
++.+++.++..+..+...+......+..+..++..+..++......+......+..++..+.....++..+..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333333333333333333333334444444444333333
No 62
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.68 E-value=0.48 Score=56.03 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=5.0
Q ss_pred ccCCCcccccc
Q 012292 421 LIVPDSAQVQP 431 (466)
Q Consensus 421 ~~~~~~~~~~~ 431 (466)
++|+|...+.-
T Consensus 624 ~v~~~l~~a~~ 634 (1164)
T TIGR02169 624 LVVEDIEAARR 634 (1164)
T ss_pred EEEcCHHHHHH
Confidence 44555444333
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.66 E-value=0.38 Score=55.82 Aligned_cols=75 Identities=27% Similarity=0.318 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Q 012292 110 LESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184 (466)
Q Consensus 110 Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLK 184 (466)
+..+...++..++....+.+.++.......+....+.+++..+.....+++...+++..++..--++..+...++
T Consensus 283 l~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~ 357 (1074)
T KOG0250|consen 283 LNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLK 357 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444456666666666666666666665555444444444444
No 64
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.66 E-value=0.0016 Score=64.87 Aligned_cols=55 Identities=25% Similarity=0.553 Sum_probs=43.9
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
....+.|||+...|.+ ..+...+.||||+|++.+|...- ....||+|-.+|...+
T Consensus 110 ~~~~~~CPvt~~~~~~-~~~fv~l~~cG~V~s~~alke~k------~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNG-KHKFVYLRPCGCVFSEKALKELK------KSKKCPVCGKPFTEED 164 (260)
T ss_pred CCceeECCCCCcccCC-ceeEEEEcCCCCEeeHHHHHhhc------ccccccccCCccccCC
Confidence 5667899999999964 23445678999999999999872 2467999999999665
No 65
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.00059 Score=67.94 Aligned_cols=46 Identities=35% Similarity=0.756 Sum_probs=38.1
Q ss_pred ccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 10 TICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 10 ltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
.-|.||-..|. |+ .+.|||+||..|-..-++ .+..|++|.+.....
T Consensus 242 f~c~icr~~f~~pV------vt~c~h~fc~~ca~~~~q-----k~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFYRPV------VTKCGHYFCEVCALKPYQ-----KGEKCYVCSQQTHGS 288 (313)
T ss_pred ccccccccccccch------hhcCCceeehhhhccccc-----cCCcceecccccccc
Confidence 35999999998 76 789999999999887766 678999997766533
No 66
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0012 Score=66.60 Aligned_cols=52 Identities=23% Similarity=0.590 Sum_probs=42.8
Q ss_pred Cccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 9 KTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.+.|-||-+.|. ....+.+..+.|||+||..|+...+.. ....||+||.+..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~----~~i~cpfcR~~~~ 55 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN----SRILCPFCRETTE 55 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC----ceeeccCCCCccc
Confidence 468999999998 334577888999999999999987662 5678999999853
No 67
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.55 E-value=0.6 Score=55.02 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012292 92 SRAEVKILEVKVSRLHTVLESQGKEIKEINEEL 124 (466)
Q Consensus 92 l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel 124 (466)
+..++..+...+..+...+......+..+..++
T Consensus 675 l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 707 (1179)
T TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKEL 707 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333333333
No 68
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0015 Score=55.51 Aligned_cols=30 Identities=27% Similarity=0.896 Sum_probs=25.8
Q ss_pred eecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccc
Q 012292 29 ISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 29 llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~ 63 (466)
=-.|.|.||..||.+|+. ....||+|.+.-
T Consensus 78 WG~CNHaFH~hCisrWlk-----tr~vCPLdn~eW 107 (114)
T KOG2930|consen 78 WGVCNHAFHFHCISRWLK-----TRNVCPLDNKEW 107 (114)
T ss_pred eeecchHHHHHHHHHHHh-----hcCcCCCcCcce
Confidence 356999999999999999 578899997654
No 69
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.45 E-value=0.0011 Score=68.19 Aligned_cols=51 Identities=33% Similarity=0.686 Sum_probs=39.9
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcc
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~ 62 (466)
.++.|..|-+.+---.+.+. .+||.|.||..|+..+++. ....+||.||+-
T Consensus 364 ~~L~Cg~CGe~~Glk~e~Lq-ALpCsHIfH~rCl~e~L~~---n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQ-ALPCSHIFHLRCLQEILEN---NGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCccccc-ccchhHHHHHHHHHHHHHh---CCCCCCccHHHH
Confidence 46889999999872123454 5799999999999999973 356899999943
No 70
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0022 Score=65.65 Aligned_cols=49 Identities=22% Similarity=0.531 Sum_probs=38.9
Q ss_pred CCCcccccccccccccccCcceeecCCCcc-cHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVF-HELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsF-C~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
...-.|-||+..-+.+ .++||-|.. |..|-....- ....||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt-----~vLPCRHLCLCs~Ca~~Lr~-----q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT-----VVLPCRHLCLCSGCAKSLRY-----QTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcce-----EEecchhhehhHhHHHHHHH-----hhcCCCccccchHh
Confidence 3367899999998855 589999954 9999886542 45889999999864
No 71
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.42 E-value=0.94 Score=43.37 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 238 REKARFSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 238 ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
++...-.++...+..++..|..++..|...|.+++++
T Consensus 157 rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 157 RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444777778888888888888888888887765
No 72
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.42 E-value=0.85 Score=53.75 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 012292 91 VSRAEVKILEVKVSRLHTVLESQGKEI 117 (466)
Q Consensus 91 ~l~~El~rLe~kl~~L~~~Le~~~~~l 117 (466)
.+..++..+...+..+...+......+
T Consensus 681 ~l~~~~~~l~~~l~~~~~~~~~~~~~l 707 (1179)
T TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKEL 707 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333333
No 73
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.18 E-value=0.0019 Score=64.50 Aligned_cols=62 Identities=26% Similarity=0.635 Sum_probs=45.7
Q ss_pred CCCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcC------------------CCCCCCCcCcCcccc
Q 012292 3 IENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCS------------------SSKKCTCPVCKQRCS 64 (466)
Q Consensus 3 ~~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~------------------~~~s~~CP~CR~~~~ 64 (466)
.++.+....|.|||.-|.. ...+..++|-|.||..|+-+++..+- ......||+||.++.
T Consensus 109 T~nn~p~gqCvICLygfa~--~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 109 TENNHPNGQCVICLYGFAS--SPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred ccCCCCCCceEEEEEeecC--CCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3567778899999999962 23345689999999999999875221 112356999999887
Q ss_pred CC
Q 012292 65 SS 66 (466)
Q Consensus 65 ~~ 66 (466)
..
T Consensus 187 ~e 188 (368)
T KOG4445|consen 187 IE 188 (368)
T ss_pred cc
Confidence 54
No 74
>PRK11637 AmiB activator; Provisional
Probab=96.13 E-value=2 Score=45.81 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=42.5
Q ss_pred ChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 012292 88 DPEVSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLEC 166 (466)
Q Consensus 88 ~~e~l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~ 166 (466)
....+..++......+..+...+.....++..+..++.....++......+...-.+++.++..+...+.++.......
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666655566655555666666666555555444444444444445555555555555555444433
No 75
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0033 Score=63.99 Aligned_cols=50 Identities=24% Similarity=0.466 Sum_probs=40.6
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
..++-.||||+---..+ ++.||+|--|+.||.+++. +...|=.|+..+..
T Consensus 419 ~sEd~lCpICyA~pi~A-----vf~PC~H~SC~~CI~qHlm-----N~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINA-----VFAPCSHRSCYGCITQHLM-----NCKRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecccchh-----hccCCCCchHHHHHHHHHh-----cCCeeeEecceeee
Confidence 35678999998665422 4789999999999999998 78899999887763
No 76
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.43 Score=49.63 Aligned_cols=139 Identities=15% Similarity=0.029 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCCh
Q 012292 130 RIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNK 209 (466)
Q Consensus 130 QlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~ 209 (466)
++.+....+...++.+..+..+...+.-++..+.....-...---.++.++.+|| ++++.++...-| ..
T Consensus 153 ~lqE~~~~L~~~~~~~~~~~lls~~~~~~~~e~~~t~~~~~slv~sl~I~~~slK-------~~y~k~~~~~~g----~~ 221 (465)
T KOG0827|consen 153 ELQENPSDLLISHEYIFGAALLSIKCFFQTAEHWMTSQPTSSLVGSLSICFESLK-------QNYDKISAIVCG----HI 221 (465)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHhhhHhhHHHHH-------HHHHHHHHHhhc----cc
Confidence 4566677777777777777666666666666654333333333334689999999 999999887755 44
Q ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHhcc
Q 012292 210 DTIDVLRKSLVIRNK---NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL--KDNEVLRALKVSK 283 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k---~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~--~~ne~l~~l~~~~ 283 (466)
...+.|.+.|....+ .|.+|.. .+-++.-+..+++.+++++.+|+..+..|+..+.. ...+..-++..++
T Consensus 222 ~~~~kL~k~L~~~~kl~~~~rel~~----~~~e~k~A~~Dvq~~~ke~~~lk~pltMl~~~~~~~~v~~~t~~~~~lE~ 296 (465)
T KOG0827|consen 222 YHHGKLSKWLATKRKLPSCRRELPK----NGFEEKLAFFDVQRMGKEAEKLKPPLTMLEIDYREEHVKLSTSLKVELEK 296 (465)
T ss_pred chhhHHHHHHHHHHHhHHHHhhhhh----hhHHHHHHHHHHHhhhcchhhcCCchHHHHHhccCccccccccCceeecc
Confidence 566778888777433 4444443 33333345699999999999999998888888776 3334344444444
No 77
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.03 E-value=0.0039 Score=62.19 Aligned_cols=43 Identities=28% Similarity=0.722 Sum_probs=35.0
Q ss_pred ccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 10 TICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 10 ltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
+-||.|-.++. |. .+.-|||.||..||...+-. ..+.||.|..
T Consensus 275 LkCplc~~Llrnp~-----kT~cC~~~fc~eci~~al~d----sDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPM-----KTPCCGHTFCDECIGTALLD----SDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcc-----cCccccchHHHHHHhhhhhh----ccccCCCccc
Confidence 89999999998 54 35579999999999976541 5689999954
No 78
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.01 E-value=1.9 Score=47.74 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 012292 110 LESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQR 172 (466)
Q Consensus 110 Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~r 172 (466)
++.....++.+.+++..+-..++.+........+....+...+....+....+..+..++...
T Consensus 277 l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 277 LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355566777777777777777778877777777777778888888888888888888887666
No 79
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0032 Score=65.41 Aligned_cols=51 Identities=27% Similarity=0.503 Sum_probs=38.7
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCC---CCCCcCcCcc
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSK---KCTCPVCKQR 62 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~---s~~CP~CR~~ 62 (466)
..|.||++... +.+....+||+|+||..|+..++.....++ ...||.|.-+
T Consensus 185 f~C~ICf~e~~--G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 185 FDCCICFEEQM--GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred ccceeeehhhc--CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 57999999986 335667899999999999999988655444 3567766443
No 80
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.98 E-value=0.003 Score=47.90 Aligned_cols=32 Identities=22% Similarity=0.576 Sum_probs=26.4
Q ss_pred eeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 28 VISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 28 ~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
.++||||..|..|...+ +...||+|..++...
T Consensus 21 ~~~pCgH~I~~~~f~~~-------rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPGE-------RYNGCPFCGTPFEFD 52 (55)
T ss_pred ccccccceeeccccChh-------hccCCCCCCCcccCC
Confidence 47899999999997654 568899999988643
No 81
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.063 Score=53.70 Aligned_cols=51 Identities=29% Similarity=0.584 Sum_probs=38.2
Q ss_pred cccccccccc--ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 11 ICSICYEDLK--PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 11 tCpICLe~f~--P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
-||+|--..- |. -..++-+|||..|.+|....+.+ +...||.|-.......
T Consensus 2 ~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~----g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSL----GPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCcc--ceeeeccccchHHHHHHHHHHhc----CCCCCCcccchhhhcc
Confidence 4999975443 42 33455699999999999999885 6789999977665443
No 82
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.93 E-value=1.1 Score=52.47 Aligned_cols=77 Identities=23% Similarity=0.342 Sum_probs=39.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREK--------------ARFSEKLEKAKEKINKLKTRVQELETAVEL--K 271 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree--------------~~~~~kLek~~~ei~~Lk~~v~eLqk~le~--~ 271 (466)
....++.|+..|......+++....+..+..+. ..+.+..+.......++.+++.++...++. .
T Consensus 519 ~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s 598 (1293)
T KOG0996|consen 519 GLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRS 598 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445566666666665555555444333333333 333333333333334555555555554444 5
Q ss_pred hHHHHHHHHhccc
Q 012292 272 DNEVLRALKVSKK 284 (466)
Q Consensus 272 ~ne~l~~l~~~~~ 284 (466)
.|++|-.|.+-|.
T Consensus 599 ~~kVl~al~r~ke 611 (1293)
T KOG0996|consen 599 RNKVLDALMRLKE 611 (1293)
T ss_pred hhHHHHHHHHHHH
Confidence 5666666666554
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=1.7 Score=47.50 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=33.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHhc
Q 012292 230 MAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL---KDNEVLRALKVS 282 (466)
Q Consensus 230 ~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~---~~ne~l~~l~~~ 282 (466)
...-++|.|+..+...+++...+++.+++-+++.--+.++. .-|.++++|...
T Consensus 338 n~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 338 NLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777777777776666655555555 455666666655
No 84
>PHA03096 p28-like protein; Provisional
Probab=95.87 E-value=0.0045 Score=62.40 Aligned_cols=51 Identities=29% Similarity=0.550 Sum_probs=35.0
Q ss_pred ccccccccccc--ccccCcce-eecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcc
Q 012292 10 TICSICYEDLK--PIVEDLQV-ISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62 (466)
Q Consensus 10 ltCpICLe~f~--P~~~~~~~-llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~ 62 (466)
-.|.||++... +..++-.. +..|.|.||..|+..|..... ....||.||..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~--~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL--YKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh--hcccCccccch
Confidence 47999999876 32333333 456999999999999977432 34556666553
No 85
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.81 E-value=3.1 Score=48.60 Aligned_cols=10 Identities=20% Similarity=0.072 Sum_probs=6.5
Q ss_pred cCCCcccccC
Q 012292 317 HSVPIYNLDW 326 (466)
Q Consensus 317 ~~~~~~~~~~ 326 (466)
+.+|+|.+-.
T Consensus 492 ~~~P~GPlG~ 501 (1074)
T KOG0250|consen 492 QTPPKGPLGK 501 (1074)
T ss_pred CCCCCCCccc
Confidence 5777776643
No 86
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.72 E-value=2.5 Score=50.83 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 216 RKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 216 kk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
..++........++..++..|..+......+++.+..++..++..+..+...+.
T Consensus 827 ~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~ 880 (1163)
T COG1196 827 EQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444433334444444444444444443333333
No 87
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.70 E-value=0.0079 Score=44.52 Aligned_cols=47 Identities=23% Similarity=0.628 Sum_probs=22.8
Q ss_pred cccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccc
Q 012292 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 12 CpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~ 63 (466)
||+|.+.++.. +....--+||+-+|.-|....++ .....||-||.+.
T Consensus 1 cp~C~e~~d~~-d~~~~PC~Cgf~IC~~C~~~i~~----~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDET-DKDFYPCECGFQICRFCYHDILE----NEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CC-CTT--SSTTS----HHHHHHHTT----SS-SB-TTT--B-
T ss_pred CCCcccccccC-CCccccCcCCCcHHHHHHHHHHh----ccCCCCCCCCCCC
Confidence 89999999732 22222347999999999887765 2478999999874
No 88
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.01 Score=57.82 Aligned_cols=54 Identities=20% Similarity=0.411 Sum_probs=44.7
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.-..||||-+.+..+ .....+-||||+||..|.+..+. .-..||+|-.++...+
T Consensus 220 ~ryiCpvtrd~LtNt-~~ca~Lr~sg~Vv~~ecvEklir-----~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNT-TPCAVLRPSGHVVTKECVEKLIR-----KDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCc-cceEEeccCCcEeeHHHHHHhcc-----ccccccCCCCcCcccc
Confidence 356899999999832 23456789999999999999987 6788999999998776
No 89
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.49 E-value=0.0074 Score=61.28 Aligned_cols=46 Identities=26% Similarity=0.685 Sum_probs=36.6
Q ss_pred CCCCcccccccccccccccCcceeecC--CCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISIC--GHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpC--GHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
..+-+.||||.+.+.|+ +..| ||.-|..|-.. ....||.||-+++.
T Consensus 45 ~~~lleCPvC~~~l~~P------i~QC~nGHlaCssC~~~--------~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP------IFQCDNGHLACSSCRTK--------VSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCccc------ceecCCCcEehhhhhhh--------hcccCCcccccccc
Confidence 45678999999999943 3556 79999999653 35789999999983
No 90
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.44 E-value=2.4 Score=51.59 Aligned_cols=12 Identities=17% Similarity=0.769 Sum_probs=9.4
Q ss_pred Cccccccccccc
Q 012292 9 KTICSICYEDLK 20 (466)
Q Consensus 9 eltCpICLe~f~ 20 (466)
...||.|-..|.
T Consensus 677 ~~~C~LC~R~f~ 688 (1311)
T TIGR00606 677 QSCCPVCQRVFQ 688 (1311)
T ss_pred CCcCCCCCCCCC
Confidence 457888888887
No 91
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.39 E-value=2.2 Score=50.21 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 222 RNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 222 ~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
+.+..+....+.+.|.....++...+++..-.+..++..+..|+..+..++.+
T Consensus 512 L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~ 564 (1293)
T KOG0996|consen 512 LLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKE 564 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 33333334444444444444444444444444444555555444444444443
No 92
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.23 E-value=0.032 Score=51.24 Aligned_cols=77 Identities=17% Similarity=0.419 Sum_probs=45.6
Q ss_pred CCccccccccccccc------ccCcc-eeecCCCcc-cHHHHHHHHHhcCC--------------------------CCC
Q 012292 8 GKTICSICYEDLKPI------VEDLQ-VISICGHVF-HELCLQQWFEYCSS--------------------------SKK 53 (466)
Q Consensus 8 ~eltCpICLe~f~P~------~~~~~-~llpCGHsF-C~~CL~~wle~~~~--------------------------~~s 53 (466)
++.+||||+|.--.+ +.+.. .-.-|+-+| |..||.++-..... ...
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 478999999986421 01110 112266666 67899998652111 124
Q ss_pred CCCcCcCccccCCCCCcchhhhhccCCCCCCC
Q 012292 54 CTCPVCKQRCSSSNSIGDQIDLVISQKPKDPE 85 (466)
Q Consensus 54 ~~CP~CR~~~~~~~~l~~l~~~l~~~~~~~~e 85 (466)
..||+||..+..+. +..-...+++.+...+.
T Consensus 81 L~CPLCRG~V~GWt-vve~AR~~LN~K~RsC~ 111 (162)
T PF07800_consen 81 LACPLCRGEVKGWT-VVEPARRFLNAKKRSCS 111 (162)
T ss_pred ccCccccCceeceE-EchHHHHHhccCCccCc
Confidence 68999999999885 22334555555555444
No 93
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.21 E-value=5.1 Score=48.21 Aligned_cols=63 Identities=24% Similarity=0.352 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012292 210 DTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKD 272 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ 272 (466)
+.++.|...+......++++....+.+..+...+...+..+..+...+...+.++...+....
T Consensus 842 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 842 EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555566666666666666666666666666666666666533
No 94
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.12 E-value=4.7 Score=41.51 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=65.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHhc
Q 012292 206 ANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL---KDNEVLRALKVS 282 (466)
Q Consensus 206 ~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~---~~ne~l~~l~~~ 282 (466)
....+....++.+|.......+.+.+.+..|..+......+++....++.++...+.++++.++. -+..-+.+|+..
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~ 284 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAK 284 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 35677888899999888888888888888888888888888999999999999999999988876 344556666665
Q ss_pred cccc
Q 012292 283 KKAS 286 (466)
Q Consensus 283 ~~~~ 286 (466)
-...
T Consensus 285 ~~~L 288 (325)
T PF08317_consen 285 VDAL 288 (325)
T ss_pred HHHH
Confidence 5443
No 95
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.10 E-value=4.8 Score=46.67 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=39.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
..+....|..++...+..+++...+++.|..........+++++.++..++.+..+++..-..
T Consensus 409 ~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~ 471 (1200)
T KOG0964|consen 409 TKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKE 471 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666655566666666666666666666554443
No 96
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=95.05 E-value=1.1 Score=44.02 Aligned_cols=54 Identities=24% Similarity=0.500 Sum_probs=38.4
Q ss_pred CCCCCccccccccccc--ccccCcceeec-CCCcccHHHHHHHHHhcCCCCCCCCc--CcCcccc
Q 012292 5 NKFGKTICSICYEDLK--PIVEDLQVISI-CGHVFHELCLQQWFEYCSSSKKCTCP--VCKQRCS 64 (466)
Q Consensus 5 ~~~~eltCpICLe~f~--P~~~~~~~llp-CGHsFC~~CL~~wle~~~~~~s~~CP--~CR~~~~ 64 (466)
....+-.||||...-- |. .+..+-| |=|-.|.+|..+.+.. +...|| -|.+-+.
T Consensus 6 ~~~~d~~CPvCksDrYLnPd--ik~linPECyHrmCESCvdRIFs~----GpAqCP~~gC~kILR 64 (314)
T COG5220 6 EEMEDRRCPVCKSDRYLNPD--IKILINPECYHRMCESCVDRIFSR----GPAQCPYKGCGKILR 64 (314)
T ss_pred hhhhcccCCccccccccCCC--eEEEECHHHHHHHHHHHHHHHhcC----CCCCCCCccHHHHHH
Confidence 3345668999986544 42 3344455 9999999999999884 567899 7765444
No 97
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.95 E-value=4.2 Score=40.17 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Q 012292 145 KVSVEQLLHSKSQELDKVTLECLKLK 170 (466)
Q Consensus 145 ~esLeqLL~~q~eEVeklkeE~~rLq 170 (466)
++.++........++..+.+...+.+
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555544444443
No 98
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.94 E-value=3.7 Score=39.44 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 012292 212 IDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEK--------AKEKINKLKTRVQELETAVELKDNEVLRALKVSK 283 (466)
Q Consensus 212 ~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek--------~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~ 283 (466)
...+.+.+..+.-.++-|..++.++.++-..+..+++. +...+--|+.++..|...|+.++-.+-.-|..+.
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555555666666666665555554444444 4444557899999999999999999877777766
Q ss_pred -ccchhHHhhhcCC
Q 012292 284 -KASQKEEILKGAT 296 (466)
Q Consensus 284 -~~~~~~~~~~~~~ 296 (466)
.+.....+..++.
T Consensus 175 ldp~~~~~v~~~l~ 188 (201)
T PF13851_consen 175 LDPAALSQVSKKLE 188 (201)
T ss_pred CCHHHHHHHHHHHH
Confidence 4544455555544
No 99
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.87 E-value=0.03 Score=51.42 Aligned_cols=54 Identities=22% Similarity=0.672 Sum_probs=39.8
Q ss_pred CCCCCCcccccccccccccccCcceeecCC--C---cccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISICG--H---VFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpCG--H---sFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+.+..+..|-||.+...+. ..||. . ..|.+|+++|+.. ++...||+|+.++...
T Consensus 3 ~~s~~~~~CRIC~~~~~~~------~~PC~CkGs~k~VH~sCL~rWi~~---s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 3 DVSLMDKCCWICKDEYDVV------TNYCNCKNENKIVHKECLEEWINT---SKNKSCKICNGPYNIK 61 (162)
T ss_pred CcCCCCCeeEecCCCCCCc------cCCcccCCCchHHHHHHHHHHHhc---CCCCcccccCCeEEEE
Confidence 3456678999999886531 23555 4 4499999999984 3678999999988644
No 100
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.81 E-value=0.012 Score=65.98 Aligned_cols=49 Identities=29% Similarity=0.752 Sum_probs=37.9
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
..|+||++ .++. .+++|||.||..|+...++.. ....||.||..+....
T Consensus 455 ~~c~ic~~-~~~~-----~it~c~h~~c~~c~~~~i~~~---~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSF-----FITRCGHDFCVECLKKSIQQS---ENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccc-----eeecccchHHHHHHHhccccc---cCCCCcHHHHHHHHHH
Confidence 78999999 4422 588999999999998877632 2348999998876554
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.78 E-value=0.02 Score=58.17 Aligned_cols=55 Identities=18% Similarity=0.522 Sum_probs=40.7
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
++-.||.|++.++- .+.-++-.|||--.|.-|....-+. -+..||-||...+..+
T Consensus 13 eed~cplcie~mdi-tdknf~pc~cgy~ic~fc~~~irq~----lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDI-TDKNFFPCPCGYQICQFCYNNIRQN----LNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCccccccccc-ccCCcccCCcccHHHHHHHHHHHhh----ccCCChHhhhhccccc
Confidence 34459999999982 2334455789999999997766552 4678999999887664
No 102
>PRK01156 chromosome segregation protein; Provisional
Probab=94.72 E-value=8.1 Score=45.02 Aligned_cols=12 Identities=33% Similarity=0.921 Sum_probs=7.3
Q ss_pred CCCCcCcCcccc
Q 012292 53 KCTCPVCKQRCS 64 (466)
Q Consensus 53 s~~CP~CR~~~~ 64 (466)
.+.||+|..+.+
T Consensus 452 ~~~Cp~c~~~~~ 463 (895)
T PRK01156 452 QSVCPVCGTTLG 463 (895)
T ss_pred CCCCCCCCCcCC
Confidence 356777766555
No 103
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.69 E-value=0.012 Score=49.88 Aligned_cols=32 Identities=38% Similarity=0.749 Sum_probs=26.2
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHH
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQ 42 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~ 42 (466)
+.-.|++|-..+.. ......||||+||+.|+.
T Consensus 77 ~~~~C~vC~k~l~~---~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN---SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC---ceEEEeCCCeEEeccccc
Confidence 45679999999962 345778999999999975
No 104
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.67 E-value=0.012 Score=43.96 Aligned_cols=48 Identities=21% Similarity=0.562 Sum_probs=25.0
Q ss_pred Cccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcc
Q 012292 9 KTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~ 62 (466)
.+.|||....+. |+ ....|.|.-|.. +..|+..........||+|.++
T Consensus 2 sL~CPls~~~i~~P~-----Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPV-----RGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEE-----EETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCc-----cCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 368999999998 76 567899987754 4556664333456899999864
No 105
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.59 E-value=4.3 Score=46.16 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=11.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012292 98 ILEVKVSRLHTVLESQGKEIKEINEE 123 (466)
Q Consensus 98 rLe~kl~~L~~~Le~~~~~lk~L~ee 123 (466)
+|+..+..|...|...+...++|+.+
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 44444444444444444444444444
No 106
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.55 E-value=6.5 Score=40.46 Aligned_cols=79 Identities=25% Similarity=0.369 Sum_probs=42.4
Q ss_pred cCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----------HHHHH
Q 012292 188 DLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAK-----------EKINK 256 (466)
Q Consensus 188 d~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~-----------~ei~~ 256 (466)
..++.+-+.++... +.....+...++.+..++...+.+...++.+..+.......++.++ .|+.+
T Consensus 205 ~~D~~eL~~lr~eL----~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~ 280 (325)
T PF08317_consen 205 SCDQEELEALRQEL----AEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKR 280 (325)
T ss_pred hcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 34444544444333 2344556666666666666666666666655555555554444433 34556
Q ss_pred HHHHHHHHHHHHhh
Q 012292 257 LKTRVQELETAVEL 270 (466)
Q Consensus 257 Lk~~v~eLqk~le~ 270 (466)
|+.++..||.....
T Consensus 281 Lk~~~~~Le~~~gw 294 (325)
T PF08317_consen 281 LKAKVDALEKLTGW 294 (325)
T ss_pred HHHHHHHHHHHHCc
Confidence 66666666655444
No 107
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=0.018 Score=64.72 Aligned_cols=43 Identities=40% Similarity=0.919 Sum_probs=35.3
Q ss_pred CCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 6 KFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 6 ~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
.+....|..|-..++ |. +..-|||+||..|+. + +...||.|+.
T Consensus 837 i~q~skCs~C~~~LdlP~-----VhF~CgHsyHqhC~e---~-----~~~~CP~C~~ 880 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPF-----VHFLCGHSYHQHCLE---D-----KEDKCPKCLP 880 (933)
T ss_pred eeeeeeecccCCccccce-----eeeecccHHHHHhhc---c-----CcccCCccch
Confidence 345578999999999 76 456799999999998 2 5688999976
No 108
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.41 E-value=9.6 Score=41.88 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 239 EKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 239 ee~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+...++.++.+++.++..++..+..++..|..
T Consensus 387 ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~a 418 (522)
T PF05701_consen 387 EAEEAKEEVEKAKEEAEQTKAAIKTAEERLEA 418 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444
No 109
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.35 E-value=4.1 Score=44.76 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 012292 207 NNKDTIDVLRKSLVIRNKNYTELMA 231 (466)
Q Consensus 207 ~~~e~~d~Lkk~l~~~~k~yeeL~~ 231 (466)
+....-..|..+|......|+..+.
T Consensus 239 ~r~~F~~eL~~Ai~eiRaqye~~~~ 263 (546)
T KOG0977|consen 239 NREYFKNELALAIREIRAQYEAISR 263 (546)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677788888888888888774
No 110
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.33 E-value=5 Score=39.34 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
..+.++.+-..+..+...+..+...+..|.-.+..+..+.......|..|..++.+.+...+..++.
T Consensus 132 aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~ 198 (237)
T PF00261_consen 132 AEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERR 198 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666667777777778888888887777776665
No 111
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.32 E-value=8.7 Score=48.19 Aligned_cols=55 Identities=27% Similarity=0.343 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
.+...+......|+++....+++.++...+..+++.+...+..+...+++|++.+
T Consensus 1467 ~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~ 1521 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEK 1521 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555555555555555555544444444444333
No 112
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=94.28 E-value=1.5 Score=43.87 Aligned_cols=82 Identities=18% Similarity=0.249 Sum_probs=55.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhH
Q 012292 96 VKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMD 175 (466)
Q Consensus 96 l~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~a 175 (466)
+..|+.++..-...|.....+|.+|+.++.++++.|-+|.+++-++.-.+.+.+..+..+++-|+.| +..|-+++-|
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTm---rssL~ekDkG 146 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETM---RSSLAEKDKG 146 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhchhhhh
Confidence 4567778888888888888999999999999999999988887666654444444444444444444 2233344444
Q ss_pred HHHHH
Q 012292 176 LAKEL 180 (466)
Q Consensus 176 lakeL 180 (466)
+.+|+
T Consensus 147 iQKYF 151 (305)
T PF15290_consen 147 IQKYF 151 (305)
T ss_pred HHHHH
Confidence 44443
No 113
>PRK09039 hypothetical protein; Validated
Probab=94.27 E-value=7.5 Score=40.44 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQ 262 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~ 262 (466)
..|..+|...+..|.+...++..|+.+...++..|..++..|..++++..
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~ 168 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDR 168 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444334444444333333333
No 114
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.016 Score=63.22 Aligned_cols=44 Identities=27% Similarity=0.591 Sum_probs=33.1
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
.+.|+||+..|.- ....+..+.|||+.|..|++.... .+|| |..
T Consensus 11 ~l~c~ic~n~f~~-~~~~Pvsl~cghtic~~c~~~lyn-------~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVV-QRLEPVSLQCGHTICGHCVQLLYN-------ASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHH-HhcCcccccccchHHHHHHHhHhh-------ccCC-CCc
Confidence 4679999888861 234445789999999999998644 7899 543
No 115
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=94.20 E-value=5.8 Score=44.91 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=64.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHH-------HhhcCCCCChhHHHHHHHHH
Q 012292 147 SVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKF-------ALLGNGANNKDTIDVLRKSL 219 (466)
Q Consensus 147 sLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~-------~~lg~~~~~~e~~d~Lkk~l 219 (466)
.|+.+-..++..+.+......-|+.+|..+.+.++.++ +|...+.. ..+.+..........++.++
T Consensus 431 sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~-------~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev 503 (861)
T PF15254_consen 431 SLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK-------EENKRLRKMFQEKDQELLENKQQFDIETTRIKIEV 503 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444455555556666677777777776666 33333311 11111123444455555555
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 220 VIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 220 ~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
....-..+.++-+.+--++|-.-+.-.|...+.||++|++...-||.-..
T Consensus 504 ~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 504 EEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred HHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555566666667788888888888877777766543
No 116
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.16 E-value=5.5 Score=44.46 Aligned_cols=64 Identities=19% Similarity=0.366 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKAR---------FSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~---------~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
.+..+..++......|.+|....+.+.+...| ..+-+.|-+.+|.++-.....||++++.....
T Consensus 455 ~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gk 527 (594)
T PF05667_consen 455 EIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGK 527 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555666666666666544333 23556667777777777777777777766554
No 117
>PHA02862 5L protein; Provisional
Probab=94.15 E-value=0.04 Score=49.79 Aligned_cols=49 Identities=37% Similarity=0.809 Sum_probs=37.1
Q ss_pred cccccccccccccccCcceeecCC-----CcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 10 TICSICYEDLKPIVEDLQVISICG-----HVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCG-----HsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
..|=||.+.-.+. .-||. ...|..||.+|+.+ .+...||+|+.++....
T Consensus 3 diCWIC~~~~~e~------~~PC~C~GS~K~VHq~CL~~WIn~---S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 3 DICWICNDVCDER------NNFCGCNEEYKVVHIKCMQLWINY---SKKKECNLCKTKYNIKK 56 (156)
T ss_pred CEEEEecCcCCCC------cccccccCcchhHHHHHHHHHHhc---CCCcCccCCCCeEEEEE
Confidence 5799999986532 24654 46799999999974 46789999999876543
No 118
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.09 E-value=7.9 Score=45.06 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
.++.+...+..+.+..++|-.+|+.|+.+..++.+.+.+....-+.|..+.+.|+.+.
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~ 452 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEET 452 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666667777777777666666555544444444444444444333
No 119
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.08 E-value=17 Score=43.98 Aligned_cols=99 Identities=17% Similarity=0.271 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccchh
Q 012292 209 KDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKKASQK 288 (466)
Q Consensus 209 ~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~~~~~ 288 (466)
...++............+..+....+.+.+....+...|..+..++.+++.++.+|+..|.-....++.-|+.. .+.-.
T Consensus 475 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~-~p~We 553 (1201)
T PF12128_consen 475 DKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKN-KPGWE 553 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhC-CCcHH
Confidence 34455555555566666777777777777777777789999999999999999999999999999999999766 44444
Q ss_pred HHhhhcCCCCCccccccccCChh
Q 012292 289 EEILKGATEDNSISLCTNNVSLE 311 (466)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~ 311 (466)
.-|-+-|+ ..-|...||+|.
T Consensus 554 ~tIGKVid---~eLL~r~dL~P~ 573 (1201)
T PF12128_consen 554 QTIGKVID---EELLYRTDLEPQ 573 (1201)
T ss_pred HHhHhhCC---HHHhcCCCCCCe
Confidence 44555554 335666677653
No 120
>PRK02224 chromosome segregation protein; Provisional
Probab=94.07 E-value=15 Score=42.68 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=7.4
Q ss_pred Cccccccccccc
Q 012292 9 KTICSICYEDLK 20 (466)
Q Consensus 9 eltCpICLe~f~ 20 (466)
...||+|--.|.
T Consensus 451 ~~~Cp~C~r~~~ 462 (880)
T PRK02224 451 AGKCPECGQPVE 462 (880)
T ss_pred cccCCCCCCcCC
Confidence 346777776654
No 121
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.041 Score=57.19 Aligned_cols=55 Identities=25% Similarity=0.446 Sum_probs=41.4
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.|.-.+|||=-+.-. .+++|+.+.|||+.|..-|.+.... +..++.||.|-....
T Consensus 331 fHSvF~CPVlKeqts--deNPPm~L~CGHVISkdAlnrLS~n--g~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTS--DENPPMMLICGHVISKDALNRLSKN--GSQSFKCPYCPVEQL 385 (394)
T ss_pred ccceeecccchhhcc--CCCCCeeeeccceecHHHHHHHhhC--CCeeeeCCCCCcccC
Confidence 456689999777765 3467789999999999999998662 223589999965443
No 122
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.86 E-value=16 Score=42.20 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=32.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKL 257 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~L 257 (466)
-.++++.+.++.-..+-.++++..+.+.+++|...+.-+++++...+..+
T Consensus 471 L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~ 520 (980)
T KOG0980|consen 471 LNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNL 520 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 45566666666666666777777777777777777666666666554433
No 123
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.84 E-value=13 Score=41.07 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 210 DTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFS-------EKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~-------~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
.-.+.|+..|.........-..+...|+++...+. .+|..+.-+...|+.++.++...|.+
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke 350 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKE 350 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 33455666655555555555555666666633322 56677777777777777777666655
No 124
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.82 E-value=14 Score=41.40 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=7.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 012292 104 SRLHTVLESQGKEIKEINEEL 124 (466)
Q Consensus 104 ~~L~~~Le~~~~~lk~L~eel 124 (466)
..+...++.....+..+..++
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~ 351 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEI 351 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 125
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.76 E-value=0.051 Score=55.45 Aligned_cols=50 Identities=22% Similarity=0.482 Sum_probs=38.0
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHH-hcCCCCCCCCcCcCcccc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFE-YCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle-~~~~~~s~~CP~CR~~~~ 64 (466)
..+...|-||-+-+.-+ +.+||+|-.|..|-.+.-. | ....||+||....
T Consensus 58 DEen~~C~ICA~~~TYs-----~~~PC~H~~CH~Ca~RlRALY----~~K~C~~CrTE~e 108 (493)
T COG5236 58 DEENMNCQICAGSTTYS-----ARYPCGHQICHACAVRLRALY----MQKGCPLCRTETE 108 (493)
T ss_pred ccccceeEEecCCceEE-----EeccCCchHHHHHHHHHHHHH----hccCCCccccccc
Confidence 44567899999998733 4799999999999765322 1 4688999998643
No 126
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.74 E-value=16 Score=42.31 Aligned_cols=64 Identities=13% Similarity=0.220 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012292 210 DTIDVLRKSLVIRNK-NYTELMAKCNLLG-------REKARFSEKLEKAKEKINKLKTRVQELETAVELKDN 273 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k-~yeeL~~k~e~L~-------ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~n 273 (466)
++.+.+...|+..++ ...+|+..++++. ++...+.+-+=..+..|.+-++.+..|+..+....+
T Consensus 475 Ealee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 475 EALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555 2334555554442 222222233333455566666666666666665444
No 127
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.71 E-value=11 Score=39.74 Aligned_cols=37 Identities=8% Similarity=0.044 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012292 206 ANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKAR 242 (466)
Q Consensus 206 ~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~ 242 (466)
++-.+++..+.+++..+.....++..+++++......
T Consensus 206 a~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q 242 (499)
T COG4372 206 ATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQ 242 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788899999998888877777777776654443
No 128
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.69 E-value=16 Score=42.07 Aligned_cols=63 Identities=16% Similarity=0.309 Sum_probs=39.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKA-RFSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~-~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
...+...|-+.+....+..+.|.. +..... .....++....++..++.++..||+.|..++-.
T Consensus 431 ~~~~~~~lEea~~eker~~e~l~e----~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~ 494 (775)
T PF10174_consen 431 EDEALETLEEALREKERLQERLEE----QRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQ 494 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 334445555555554444444432 322222 223788889999999999999999999987744
No 129
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.67 E-value=0.059 Score=48.08 Aligned_cols=54 Identities=28% Similarity=0.618 Sum_probs=40.9
Q ss_pred CCcccccccccccccccCcceeec---CCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLKPIVEDLQVISI---CGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llp---CGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.-..|.||.|...+. +++.| ||-..|..|....|+++. -.+.||+|+..|....
T Consensus 79 ~lYeCnIC~etS~ee----~FLKPneCCgY~iCn~Cya~LWK~~~--~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEE----RFLKPNECCGYSICNACYANLWKFCN--LYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchh----hcCCcccccchHHHHHHHHHHHHHcc--cCCCCCcccccccccc
Confidence 345899999987521 23333 999999999999888654 6789999999987553
No 130
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.64 E-value=13 Score=40.59 Aligned_cols=22 Identities=9% Similarity=0.371 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHH
Q 012292 90 EVSRAEVKILEVKVSRLHTVLE 111 (466)
Q Consensus 90 e~l~~El~rLe~kl~~L~~~Le 111 (466)
..+..++..+...+..+...+.
T Consensus 177 ~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 177 RELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444443
No 131
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=93.63 E-value=0.036 Score=57.96 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=29.7
Q ss_pred CCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHH
Q 012292 7 FGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFE 46 (466)
Q Consensus 7 ~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle 46 (466)
.+++.||||-..|. |+ ++||||+.|..|-...+-
T Consensus 2 eeelkc~vc~~f~~epi------il~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPI------ILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCce------EeecccHHHHHHHHhhcc
Confidence 46899999999999 65 899999999999887654
No 132
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.61 E-value=15 Score=46.17 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
..++|..++..|..+...-+....+++.....|...+++|+..|+..
T Consensus 1098 ~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1098 QIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443334444455555555555566666665554
No 133
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.59 E-value=14 Score=40.89 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 012292 111 ESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQR 172 (466)
Q Consensus 111 e~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~r 172 (466)
+.....+..+.+++..+-..++.|........+....+...+.........+..+..++...
T Consensus 274 ~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 274 DEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQS 335 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555566666666666666666666666666666666666666666666666665444
No 134
>PRK09039 hypothetical protein; Validated
Probab=93.51 E-value=9.8 Score=39.56 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 236 LGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 236 L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
|++........|..++.+....+.++..|+..|+.
T Consensus 149 Lr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 149 LRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444
No 135
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.46 E-value=19 Score=43.02 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=2.3
Q ss_pred cccccc
Q 012292 14 ICYEDL 19 (466)
Q Consensus 14 ICLe~f 19 (466)
||-+.+
T Consensus 371 ~~~dd~ 376 (1317)
T KOG0612|consen 371 VDEDDL 376 (1317)
T ss_pred cccccc
Confidence 333333
No 136
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.44 E-value=13 Score=41.14 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=22.6
Q ss_pred hHHHHHHHHhhcCC--CCCh-hHHHHHHHHHHHHHHH
Q 012292 192 DEDEVLKFALLGNG--ANNK-DTIDVLRKSLVIRNKN 225 (466)
Q Consensus 192 eEeE~LK~~~lg~~--~~~~-e~~d~Lkk~l~~~~k~ 225 (466)
.|-.+||..-||.. ++.. +++.+|-..|...|+.
T Consensus 351 ~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~ 387 (629)
T KOG0963|consen 351 KELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRK 387 (629)
T ss_pred HHHHHHHHhhcCCcccccccccccchHHHHHHHHHhh
Confidence 66667777777732 3344 6777888877777764
No 137
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.43 E-value=8.4 Score=37.77 Aligned_cols=58 Identities=7% Similarity=0.244 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
.+...+..+...+.+...+.+...+....+...+..+..++...+.++..++..|+..
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444445555555555555555555555443
No 138
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=11 Score=42.90 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 218 SLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 218 ~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
++...++..+-.+..+.+|..+...++.+|.++--|...|..+++..|...
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~ 523 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAH 523 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence 333444444444455555555555556666666666666655555444433
No 139
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.052 Score=55.13 Aligned_cols=47 Identities=26% Similarity=0.639 Sum_probs=36.5
Q ss_pred CCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 8 GKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
+...||||+.... |. .+..-|-+||+.|+-.++. ....||+=..+..
T Consensus 299 ~~~~CpvClk~r~Npt-----vl~vSGyVfCY~Ci~~Yv~-----~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPT-----VLEVSGYVFCYPCIFSYVV-----NYGHCPVTGYPAS 346 (357)
T ss_pred ccccChhHHhccCCCc-----eEEecceEEeHHHHHHHHH-----hcCCCCccCCcch
Confidence 3468999999987 54 3455699999999999988 5788997655443
No 140
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=93.36 E-value=16 Score=40.69 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 012292 89 PEVSRAEVKILEV-------KVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDK 161 (466)
Q Consensus 89 ~e~l~~El~rLe~-------kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVek 161 (466)
...++..+.||+. .+.-|.++++.|..+|.+|+--+..-+.++-....+++..+-...+|+..---+-.||..
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSe 185 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSE 185 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Confidence 3446666666665 555577888888888888877666555555555556655555444444433333444444
Q ss_pred HH
Q 012292 162 VT 163 (466)
Q Consensus 162 lk 163 (466)
++
T Consensus 186 LK 187 (861)
T KOG1899|consen 186 LK 187 (861)
T ss_pred hH
Confidence 43
No 141
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.28 E-value=3.3 Score=41.42 Aligned_cols=46 Identities=24% Similarity=0.262 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Q 012292 139 NEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184 (466)
Q Consensus 139 ~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLK 184 (466)
..+.=++++++..|+.++..++.-+.+..-|..+|..+...+..|.
T Consensus 35 qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~le 80 (307)
T PF10481_consen 35 QQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLE 80 (307)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Confidence 3444566788888998888888888888888888776666666665
No 142
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.20 E-value=17 Score=42.43 Aligned_cols=88 Identities=16% Similarity=0.078 Sum_probs=49.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh------hhHHHHHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTR---VQELETAVEL------KDNEVLRA 278 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~---v~eLqk~le~------~~ne~l~~ 278 (466)
-++.++.|+..+...-..|+.+..+|+.|.....-+.++-.-+-.+|..|+.. ...|+...+. ....++-.
T Consensus 507 l~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~ida 586 (1195)
T KOG4643|consen 507 LHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDA 586 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44556666666666666777777777777766666555555566666666651 1122222222 23334444
Q ss_pred HHhccccchhHHhhhcCC
Q 012292 279 LKVSKKASQKEEILKGAT 296 (466)
Q Consensus 279 l~~~~~~~~~~~~~~~~~ 296 (466)
|. +-++....+.+.+.+
T Consensus 587 L~-alrrhke~LE~e~mn 603 (1195)
T KOG4643|consen 587 LN-ALRRHKEKLEEEIMN 603 (1195)
T ss_pred HH-HHHHHHHHHHHHHhh
Confidence 44 445555555555544
No 143
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.14 E-value=4.6 Score=46.06 Aligned_cols=101 Identities=22% Similarity=0.353 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHH
Q 012292 142 LRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVI 221 (466)
Q Consensus 142 Lk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~ 221 (466)
.+....++.+...|..++..+.++...++.+...++..++..+ +..+.| .+.+
T Consensus 564 ~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~-------d~Qe~L------------------~~R~-- 616 (717)
T PF10168_consen 564 QRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAK-------DKQEKL------------------MKRV-- 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH------------------HHHH--
Confidence 3334455566667777777777777777777666655555555 333333 1111
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 222 RNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 222 ~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
...+..+....-.|...|..+.++|+....++..|+..++++++.++.
T Consensus 617 -~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 617 -DRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred -HHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222333333455666677777777777777777777777666665
No 144
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.96 E-value=8.4 Score=36.75 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
-.+-|+-.+..+...+..|++.+.+++++.-.+..+++.+..+..+|......+++....
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~e 127 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKE 127 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 344555666677778888898888898888888888888888888887777777777666
No 145
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.92 E-value=13 Score=38.33 Aligned_cols=79 Identities=20% Similarity=0.179 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHhccc
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL---KDNEVLRALKVSKK 284 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~---~~ne~l~~l~~~~~ 284 (466)
..+..+.++.++............+++.++.+......+++....++.++...+.++++.++. -+..-+++|+..-.
T Consensus 202 d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLK 281 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 556677777777777777788888888888888888899999999999999999999998877 33444566665544
Q ss_pred cc
Q 012292 285 AS 286 (466)
Q Consensus 285 ~~ 286 (466)
+.
T Consensus 282 ~L 283 (312)
T smart00787 282 LL 283 (312)
T ss_pred HH
Confidence 43
No 146
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.83 E-value=0.066 Score=60.27 Aligned_cols=52 Identities=31% Similarity=0.683 Sum_probs=32.0
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCC--CCCCCCcCcC
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSS--SKKCTCPVCK 60 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~--~~s~~CP~CR 60 (466)
....|-||++.+... ...-....|=|+||+.||..|...... +..+.||.|+
T Consensus 190 ~~yeCmIC~e~I~~t-~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 190 RKYECMICTERIKRT-APVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred CceEEEEeeeecccc-CCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 346788888887731 111223446688888888888664222 2467788887
No 147
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.77 E-value=1.2 Score=43.18 Aligned_cols=69 Identities=32% Similarity=0.416 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKV 281 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~ 281 (466)
+.|.+.+-.+...|+++..+++.|..+..++..++.+.-.+..+|+++..+|+-.++..+.+.+++|.+
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~ 220 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVK 220 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 345555666677899999999999999999999999999999999999999999999999999999987
No 148
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.73 E-value=11 Score=37.25 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 012292 144 QKVSVEQLLHSKSQELDKVTLECLKLKQR 172 (466)
Q Consensus 144 ~~esLeqLL~~q~eEVeklkeE~~rLq~r 172 (466)
.++.++..+.....++.+...++..++.+
T Consensus 46 ~~~~~~~e~e~le~qv~~~e~ei~~~r~r 74 (239)
T COG1579 46 ALEALEIELEDLENQVSQLESEIQEIRER 74 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555566655555555444
No 149
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.71 E-value=28 Score=43.15 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=14.8
Q ss_pred cccCCCccccccccccccCCC
Q 012292 420 TLIVPDSAQVQPIVNIKKNPP 440 (466)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~ 440 (466)
++.|+|..++.-.++..-.-|
T Consensus 712 ~iVv~d~~~A~~ai~~L~~~p 732 (1486)
T PRK04863 712 AIVVPDLSDAAEQLAGLEDCP 732 (1486)
T ss_pred eEEeCCHHHHHHHHHhccCCc
Confidence 566777777777777766644
No 150
>PF13166 AAA_13: AAA domain
Probab=92.68 E-value=6.5 Score=44.40 Aligned_cols=49 Identities=35% Similarity=0.492 Sum_probs=30.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHH
Q 012292 231 AKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE------LKDNEVLRAL 279 (466)
Q Consensus 231 ~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le------~~~ne~l~~l 279 (466)
..+..+.+.......++..+..++..++.++.+|+..+. ..=|+.|.++
T Consensus 417 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 417 KEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 333344444555556666677777777777777776666 3566777777
No 151
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=22 Score=40.34 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 220 VIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 220 ~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
+...+..+.|+.+.+........+...+.....++..++.+...|+..++
T Consensus 562 ~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e 611 (698)
T KOG0978|consen 562 QEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELE 611 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444433
No 152
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.58 E-value=0.038 Score=64.63 Aligned_cols=47 Identities=30% Similarity=0.658 Sum_probs=38.5
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
-..|+||++.+..- ..+..|||.||..|...|+. .+..||.|...+.
T Consensus 1153 ~~~c~ic~dil~~~----~~I~~cgh~~c~~c~~~~l~-----~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQ----GGIAGCGHEPCCRCDELWLY-----ASSRCPICKSIKG 1199 (1394)
T ss_pred ccchHHHHHHHHhc----CCeeeechhHhhhHHHHHHH-----HhccCcchhhhhh
Confidence 45899999999721 14678999999999999999 6789999985544
No 153
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.58 E-value=26 Score=41.10 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=7.8
Q ss_pred CCCCcccccCCCce
Q 012292 438 NPPSPVSLSKPGIF 451 (466)
Q Consensus 438 ~~~~~~~~~~~~~~ 451 (466)
.+-|-|+-.|-|-|
T Consensus 1135 ~sQFIVVSLKeGMF 1148 (1174)
T KOG0933|consen 1135 HSQFIVVSLKEGMF 1148 (1174)
T ss_pred CCeEEEEEchhhcc
Confidence 34455555566665
No 154
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.067 Score=49.93 Aligned_cols=37 Identities=30% Similarity=0.786 Sum_probs=27.4
Q ss_pred ecCCCcccHHHHHHHHHhcCCC-CC-----CCCcCcCccccCC
Q 012292 30 SICGHVFHELCLQQWFEYCSSS-KK-----CTCPVCKQRCSSS 66 (466)
Q Consensus 30 lpCGHsFC~~CL~~wle~~~~~-~s-----~~CP~CR~~~~~~ 66 (466)
..||..||.-||..|+..--.. ++ ..||.|-.++..+
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 5799999999999999831111 11 3699999888754
No 155
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.42 E-value=11 Score=44.51 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=11.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 012292 207 NNKDTIDVLRKSLVIRNKNYTELM 230 (466)
Q Consensus 207 ~~~e~~d~Lkk~l~~~~k~yeeL~ 230 (466)
...+.+..|..+|..+-.++.++.
T Consensus 1508 ~tpeqi~~L~~~I~e~v~sL~nVd 1531 (1758)
T KOG0994|consen 1508 LTPEQIQQLTGEIQERVASLPNVD 1531 (1758)
T ss_pred CCHHHHHHHHHHHHHHHHhcccHH
Confidence 344555555555555544443333
No 156
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.07 E-value=22 Score=39.19 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=28.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
....+..+++.+..+......|......|..+..++++.|+....=-..+.-+++.|...|+-
T Consensus 153 leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f 215 (546)
T KOG0977|consen 153 LEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAF 215 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444555544444445555555445555555544444443332223333334444444433
No 157
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.03 E-value=21 Score=43.19 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=16.0
Q ss_pred ChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012292 88 DPEVSRAEVKILEVKVSRLHTVLESQGKEIKEINEEL 124 (466)
Q Consensus 88 ~~e~l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel 124 (466)
+.+.++.++..+...+.......+...+.++....++
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~ 637 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKI 637 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444433333333333333333
No 158
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.97 E-value=31 Score=40.54 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=22.1
Q ss_pred cccccccccccCC--CCCCCCCCCCccCCccc
Q 012292 390 SIHQTIADVVQKP--TPSRLGSAPTIDIDEDV 419 (466)
Q Consensus 390 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 419 (466)
++--.++|+|+.. ++.=+-+=|++.-|++-
T Consensus 827 alrLALs~~~~~~~~l~~l~LDEpf~~LD~e~ 858 (908)
T COG0419 827 ALRLALSDLLQGRARLELLFLDEPFGTLDEER 858 (908)
T ss_pred HHHHHHHHHHhcccCCCeeEeeCCCCCCCHHH
Confidence 4556788999988 67667777777777763
No 159
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.97 E-value=0.085 Score=59.78 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=28.7
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHH
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFE 46 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle 46 (466)
..-+|.+|.-.+- ..+...-||||.||..||.+...
T Consensus 816 p~d~C~~C~~~ll---~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLL---IKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhh---cCcceeeeccchHHHHHHHHHHH
Confidence 3458999998885 23457789999999999998765
No 160
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=91.93 E-value=22 Score=38.89 Aligned_cols=141 Identities=18% Similarity=0.241 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh----------HHHHHHHh
Q 012292 113 QGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNM----------DLAKELAS 182 (466)
Q Consensus 113 ~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~----------alakeL~s 182 (466)
...++..+++++..+-..+..+....+...+.+..+..-+....+..+.+..++..++.... +..+.|.+
T Consensus 279 aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~e 358 (570)
T COG4477 279 AEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKE 358 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555555555555555555544422 11222222
Q ss_pred ccccccCChhHHHHHHHHhhcCCC----CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012292 183 LKLVSDLNLDEDEVLKFALLGNGA----NNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLK 258 (466)
Q Consensus 183 LKlvsd~~~eEeE~LK~~~lg~~~----~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk 258 (466)
+. ..-.++++ .++-.. .-++....+.+.+...++...++.....+|++++..++..|...+.++..++
T Consensus 359 l~------~~~~~i~~--~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eik 430 (570)
T COG4477 359 LE------SVLDEILE--NIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIK 430 (570)
T ss_pred HH------HHHHHHHH--HhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 00111111 111001 1344555555555555556666666666677777777666666666666555
Q ss_pred HHH
Q 012292 259 TRV 261 (466)
Q Consensus 259 ~~v 261 (466)
..+
T Consensus 431 R~m 433 (570)
T COG4477 431 RYM 433 (570)
T ss_pred HHH
Confidence 443
No 161
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=0.21 Score=48.41 Aligned_cols=60 Identities=23% Similarity=0.453 Sum_probs=42.8
Q ss_pred CCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCC---CCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSS---SKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~---~~s~~CP~CR~~~~~~~ 67 (466)
++.-..-|..|--.+.. .+. ..+.|-|.||+.|+..|...-+. .....||.|...+-+..
T Consensus 46 DsDY~pNC~LC~t~La~--gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLAS--GDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred hcCCCCCCceeCCcccc--Ccc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 34456789999988862 222 25789999999999999764332 24578999988876553
No 162
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.77 E-value=28 Score=39.76 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 212 IDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 212 ~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
...|.+......--...|+.+...|.+|.....++..-.+.++++||+.+-..+-+.+.
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~ 588 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEE 588 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666655555556667777777788888777777777777788888777766666555
No 163
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.74 E-value=16 Score=36.86 Aligned_cols=40 Identities=33% Similarity=0.506 Sum_probs=24.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 231 AKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 231 ~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
.+++.+..........+..++.++..++..++.|+..++.
T Consensus 195 ~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~ 234 (312)
T PF00038_consen 195 SKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELES 234 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHhHHHHHHhhhhHhhhhhhc
Confidence 3444555555555566666777777777777766666665
No 164
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.69 E-value=0.097 Score=52.50 Aligned_cols=46 Identities=30% Similarity=0.637 Sum_probs=35.7
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
..||||.+.+.+. ...+..++|||.-|..|+....- ..-+||.|..
T Consensus 159 ~ncPic~e~l~~s-~~~~~~~~CgH~~h~~cf~e~~~-----~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLS-FEDAGVLKCGHYMHSRCFEEMIC-----EGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccc-cccCCccCcccchHHHHHHHHhc-----cCCCCCcccc
Confidence 4599999998842 33345689999999999887655 3399999987
No 165
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.69 E-value=29 Score=40.00 Aligned_cols=58 Identities=22% Similarity=0.274 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
..|.+.|..+.++..+|....-+...+...+..+|+...+++..||=++.-|++.|+-
T Consensus 109 ~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kelei 166 (769)
T PF05911_consen 109 SALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEI 166 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666665555555556666677777777777777777777777665
No 166
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.55 E-value=46 Score=41.71 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 012292 252 EKINKLKTRVQELETAVELK 271 (466)
Q Consensus 252 ~ei~~Lk~~v~eLqk~le~~ 271 (466)
+.|..|...++.|.+.++..
T Consensus 805 ~~i~eL~~el~~lk~klq~~ 824 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEK 824 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 167
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.45 E-value=35 Score=40.14 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 012292 248 EKAKEKINKLKTR 260 (466)
Q Consensus 248 ek~~~ei~~Lk~~ 260 (466)
+++..++++++..
T Consensus 909 kkle~e~~~~~~e 921 (1174)
T KOG0933|consen 909 KKLEHEVTKLESE 921 (1174)
T ss_pred HHHHhHHHHhhhh
Confidence 3333333333333
No 168
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=91.24 E-value=0.16 Score=37.33 Aligned_cols=42 Identities=31% Similarity=0.749 Sum_probs=26.9
Q ss_pred cccccccccccccCcceeecCCC-----cccHHHHHHHHHhcCCCCCCCCcCc
Q 012292 12 CSICYEDLKPIVEDLQVISICGH-----VFHELCLQQWFEYCSSSKKCTCPVC 59 (466)
Q Consensus 12 CpICLe~f~P~~~~~~~llpCGH-----sFC~~CL~~wle~~~~~~s~~CP~C 59 (466)
|-||++.-.+. .+.+.||+- ..|..||.+|+... +...|++|
T Consensus 1 CrIC~~~~~~~---~~li~pC~C~Gs~~~vH~~CL~~W~~~~---~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEED---EPLISPCRCKGSMKYVHRSCLERWIRES---GNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSS---S-EE-SSS-SSCCGSEECCHHHHHHHHH---T-SB-TTT
T ss_pred CeEeCCcCCCC---CceecccccCCCcchhHHHHHHHHHHhc---CCCcCCCC
Confidence 67899887632 134678763 56999999999952 56779988
No 169
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=90.89 E-value=0.11 Score=46.72 Aligned_cols=36 Identities=22% Similarity=0.623 Sum_probs=27.4
Q ss_pred CcccccccccccccccCcceeecCC------CcccHHHHHHHHH
Q 012292 9 KTICSICYEDLKPIVEDLQVISICG------HVFHELCLQQWFE 46 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCG------HsFC~~CL~~wle 46 (466)
...|.||++.+.. ...+ ..++|| |.||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~-~~Gv-V~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDN-NDGV-VYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred Ceeehhhhhhhhc-CCCE-EEEecCCeehHHHHHHHHHHHHHHh
Confidence 5789999999974 2233 345676 8899999999943
No 170
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.86 E-value=0.08 Score=53.37 Aligned_cols=30 Identities=30% Similarity=0.653 Sum_probs=22.8
Q ss_pred eeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 28 VISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 28 ~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.++||.|+||+.|-..- ....||.|-.++-
T Consensus 105 RmIPCkHvFCl~CAr~~-------~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARSD-------SDKICPLCDDRVQ 134 (389)
T ss_pred cccccchhhhhhhhhcC-------ccccCcCcccHHH
Confidence 47899999999996542 2478999966553
No 171
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.86 E-value=36 Score=39.30 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 012292 91 VSRAEVKILEVKVSRLHTVLESQGKEI 117 (466)
Q Consensus 91 ~l~~El~rLe~kl~~L~~~Le~~~~~l 117 (466)
.++.+.++|+..++.....+......+
T Consensus 7 ~~q~E~e~L~~ele~~~~~l~~~~~~i 33 (775)
T PF10174_consen 7 RLQRENERLRRELERKQSKLGSSMNSI 33 (775)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhH
Confidence 345555555555555555554444443
No 172
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.41 E-value=38 Score=38.76 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKA 250 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~ 250 (466)
.|+.++..+..|..+..-++..++.+
T Consensus 122 efE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 122 EFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777666665555544
No 173
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.33 E-value=20 Score=35.51 Aligned_cols=37 Identities=19% Similarity=0.451 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKV 281 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~ 281 (466)
+.+++...++...+.++..++..+..+...+++.|..
T Consensus 119 ~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ 155 (302)
T PF10186_consen 119 EQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777788888888888888888887777654
No 174
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.17 E-value=24 Score=36.15 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012292 212 IDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALK 280 (466)
Q Consensus 212 ~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~ 280 (466)
|..|...++.+.+.++++...-+.|..-...++..=..+..|+..|++++.+...-|.+..-+ |+.++
T Consensus 236 It~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEE-lk~lR 303 (306)
T PF04849_consen 236 ITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEE-LKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 334444444444445555544444444444443333345566777777777766666665554 34433
No 175
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.87 E-value=0.18 Score=49.69 Aligned_cols=60 Identities=20% Similarity=0.491 Sum_probs=40.6
Q ss_pred CCCCCCcccccccccccccccCcceeecCC-----CcccHHHHHHHHHhcCC---CCCCCCcCcCcccc
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISICG-----HVFHELCLQQWFEYCSS---SKKCTCPVCKQRCS 64 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpCG-----HsFC~~CL~~wle~~~~---~~s~~CP~CR~~~~ 64 (466)
++...+-.|=||+..=.+. ....-.-||. |..|++||.+|+..... .....||+|+....
T Consensus 15 ~~~e~eR~CWiCF~TdeDn-~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDN-RLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred CccccceeEEEEeccCccc-chhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4456677899999875421 1111234553 78899999999986444 34568999988654
No 176
>PLN03188 kinesin-12 family protein; Provisional
Probab=89.83 E-value=37 Score=40.89 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhh------HHHHHHHhcc
Q 012292 156 SQELDKVTLECLKLKQRNM------DLAKELASLK 184 (466)
Q Consensus 156 ~eEVeklkeE~~rLq~rn~------alakeL~sLK 184 (466)
.+-|+.++...++.-.+.. +++.++..|+
T Consensus 1134 ~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~ 1168 (1320)
T PLN03188 1134 QEGIDDVKKAAARAGVRGAESKFINALAAEISALK 1168 (1320)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 3446666666666655553 3466666666
No 177
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.77 E-value=64 Score=40.49 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 209 KDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQEL 264 (466)
Q Consensus 209 ~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eL 264 (466)
...+..|+..|......|..+....+.|......+.++++....++.++++.....
T Consensus 216 s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~ 271 (1822)
T KOG4674|consen 216 SIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESS 271 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34566777777777777777777777777776666676666666666665544433
No 178
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=89.66 E-value=24 Score=35.35 Aligned_cols=45 Identities=18% Similarity=0.443 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012292 235 LLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRAL 279 (466)
Q Consensus 235 ~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l 279 (466)
.+.++....+...+..+.+|..|+..|+.|+....+..+-+.-++
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dv 234 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFADV 234 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHHH
Confidence 346677777888889999999999999999999887666666665
No 179
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.59 E-value=46 Score=38.57 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFS-------EKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~-------~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
...+|..+++.+.++..+.. +.|+..+.|...+-.+++.|+..+
T Consensus 467 ~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~ 517 (980)
T KOG0980|consen 467 ENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTL 517 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444432 444444444444444555555443
No 180
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.41 E-value=16 Score=33.16 Aligned_cols=68 Identities=26% Similarity=0.391 Sum_probs=41.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 207 NNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 207 ~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
++...+.+|...+-..+.....|.....-+.++.....+.+++....|..|......+...|+.++.+
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555666666666666666666666666665555
No 181
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=89.35 E-value=0.2 Score=56.01 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=41.5
Q ss_pred CCcccccccccccccccCcceeec---CCCcccHHHHHHHHHhcC-CCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLKPIVEDLQVISI---CGHVFHELCLQQWFEYCS-SSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llp---CGHsFC~~CL~~wle~~~-~~~s~~CP~CR~~~~~~~ 67 (466)
+.-+|.||.-.+.+. .+...+.| |+|.||..||..|.+.-- ....-.||+|...|..+.
T Consensus 95 ~s~Ss~~C~~E~S~~-~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPD-VDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred cccccchhheecCCc-ccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 456788888877731 13333556 999999999999987321 124567999998887775
No 182
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.98 E-value=25 Score=34.77 Aligned_cols=10 Identities=10% Similarity=0.541 Sum_probs=6.2
Q ss_pred CcccHHHHHH
Q 012292 34 HVFHELCLQQ 43 (466)
Q Consensus 34 HsFC~~CL~~ 43 (466)
+.||..|+..
T Consensus 11 ~~~C~~C~~~ 20 (302)
T PF10186_consen 11 RFYCANCVNN 20 (302)
T ss_pred CeECHHHHHH
Confidence 4567777654
No 183
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.68 E-value=32 Score=35.52 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 247 LEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 247 Lek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+..+-.|+.-|++++..+|.+.+-
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l 214 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555544
No 184
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.67 E-value=57 Score=38.41 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=6.6
Q ss_pred CCCcccccccccc
Q 012292 7 FGKTICSICYEDL 19 (466)
Q Consensus 7 ~~eltCpICLe~f 19 (466)
.....|.||+..=
T Consensus 55 KSSiVcAIcLglg 67 (1072)
T KOG0979|consen 55 KSSIVCAICLGLG 67 (1072)
T ss_pred chHHHHHHHHHcC
Confidence 3345555555543
No 185
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.63 E-value=57 Score=38.36 Aligned_cols=177 Identities=19% Similarity=0.217 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHH-HHH-HHHhhcCCCCChhHHH
Q 012292 136 ALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDED-EVL-KFALLGNGANNKDTID 213 (466)
Q Consensus 136 ~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEe-E~L-K~~~lg~~~~~~e~~d 213 (466)
...+.++..+..+...+....+|++...-....+.++..-+...+..|. ... +.+ |.++....++..+.-.
T Consensus 321 q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~-------~~~~~l~~Kqgr~sqFssk~eRDk 393 (1200)
T KOG0964|consen 321 QQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLE-------QKQRDLLAKQGRYSQFSSKEERDK 393 (1200)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHhhccccccCcHHHHHH
Confidence 3334444544455555555555555544444444444443344444444 222 222 4444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHhcc-ccchhH
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVL---RALKVSK-KASQKE 289 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l---~~l~~~~-~~~~~~ 289 (466)
-++.++...+....+.....+.|..+...+.+.|++..++|.+|...+.+..-.++....+.. +.+-..- +....-
T Consensus 394 wir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lW 473 (1200)
T KOG0964|consen 394 WIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELW 473 (1200)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777667777777777777777777777777777776666655555554211111 1110000 111222
Q ss_pred HhhhcCCCCCccccccccCChhhhhhccCCCc
Q 012292 290 EILKGATEDNSISLCTNNVSLEDQREQHSVPI 321 (466)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (466)
+.+..+. ....-.-.|++..++.=..+++.
T Consensus 474 REE~~l~--~~i~~~~~dl~~~~~~L~~~~~r 503 (1200)
T KOG0964|consen 474 REEKKLR--SLIANLEEDLSRAEKNLRATMNR 503 (1200)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHhccc
Confidence 3333333 22333444777777777777663
No 186
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.49 E-value=11 Score=41.91 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 154 SKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRNKNYTELMAKC 233 (466)
Q Consensus 154 ~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~k~yeeL~~k~ 233 (466)
....++..+.....+++++|-.|..++..|+ .+.++|+... +.+++.+- .-.....++
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k-------~eie~L~~~l-----------~~~~r~~~----~~~~~~rei 476 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELK-------REIEKLESEL-----------ERFRREVR----DKVRKDREI 476 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-----------HHHHHHHH----HHHhhhHHH
Confidence 3344455555566666666666666666777 5655553211 11222111 111122445
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 234 NLLGREKARFSEKLEKAKEKINKLKTRVQELE 265 (466)
Q Consensus 234 e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLq 265 (466)
+.+.++..++.++|++.+..++.|+.++.+|.
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666677777777777777776666
No 187
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.40 E-value=49 Score=37.36 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 012292 210 DTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSK 283 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~ 283 (466)
..+..|++.+-...+..++|...-..|.+....-.+++..+...|.+|+..++.+++..++....+.++|-..+
T Consensus 594 nk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~ 667 (786)
T PF05483_consen 594 NKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKS 667 (786)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 45667888887778888888887777888777777888888888999999999999988887777777776433
No 188
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.35 E-value=45 Score=36.80 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKA 250 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~ 250 (466)
.|+.|+..++.|..+..-++..++.+
T Consensus 195 EyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 195 EYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777776666666555443
No 189
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=88.28 E-value=2.6 Score=44.73 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=27.3
Q ss_pred CCCCCcccccccccccccccCcceeecCCCcccHHHHHH
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQ 43 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~ 43 (466)
+......||+|-..|.-.. +.+..-=||-+.|..|-.-
T Consensus 176 DDs~V~~CP~Ca~~F~l~r-RrHHCRLCG~VmC~~C~k~ 213 (505)
T KOG1842|consen 176 DDSSVQFCPECANSFGLTR-RRHHCRLCGRVMCRDCSKF 213 (505)
T ss_pred CCCcccccccccchhhhHH-HhhhhhhcchHHHHHHHHh
Confidence 4556789999999997222 2233445999999999764
No 190
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.27 E-value=54 Score=37.64 Aligned_cols=7 Identities=29% Similarity=0.377 Sum_probs=5.0
Q ss_pred CCccccc
Q 012292 8 GKTICSI 14 (466)
Q Consensus 8 ~eltCpI 14 (466)
...+|||
T Consensus 363 ~~~~cpI 369 (717)
T PF10168_consen 363 LSYSCPI 369 (717)
T ss_pred CCCCcce
Confidence 4568888
No 191
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=88.19 E-value=70 Score=38.84 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=35.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
..-+++.+..+.......+..+...++.+.++.......+..+..-...++.....+...|..
T Consensus 817 ~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~ 879 (1294)
T KOG0962|consen 817 GIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLAR 879 (1294)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666666666666766666666666655544444444444444444444433333
No 192
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.17 E-value=0.21 Score=51.43 Aligned_cols=31 Identities=39% Similarity=0.664 Sum_probs=22.4
Q ss_pred ceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 27 QVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 27 ~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
...+||||+.| |..-.. ....||+||..+..
T Consensus 318 ~~fvpcGh~cc--ct~cs~------~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 318 AVFVPCGHVCC--CTLCSK------HLPQCPVCRQRIRL 348 (355)
T ss_pred eeeecCCcEEE--chHHHh------hCCCCchhHHHHHH
Confidence 45789999977 655332 35679999987753
No 193
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.16 E-value=31 Score=38.16 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc---ccchhHHhhhcCCCCCcc
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSK---KASQKEEILKGATEDNSI 301 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~---~~~~~~~~~~~~~~~~~~ 301 (466)
.|..+.++|+.|+++..-..++++++..|+.+|++-+-...=...+....+++-..++. -++.++.--..+. |+.
T Consensus 446 ~Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l~~~~~~vke~nq~l~~g~gra~~~L~~~~kek~y~i~r--~~g 523 (758)
T COG4694 446 KYCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFLVSIKPIVKEINQTLLKGYGRANFSLACTEKEKFYRIQR--EDG 523 (758)
T ss_pred HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcchheeeeeeccchhhheeec--ccC
Confidence 68899999999999998888888888888777776653332222222223333333333 4455555555666 678
Q ss_pred ccccccCChhhhh
Q 012292 302 SLCTNNVSLEDQR 314 (466)
Q Consensus 302 ~~~~~~~~~~~~~ 314 (466)
.+.-+.||--|+.
T Consensus 524 ~~~gn~LSEGekt 536 (758)
T COG4694 524 QLVGNTLSEGEKT 536 (758)
T ss_pred ccccccccccchh
Confidence 8888888877764
No 194
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.95 E-value=0.29 Score=51.57 Aligned_cols=51 Identities=29% Similarity=0.578 Sum_probs=34.0
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCC-CCCCCCcC
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSS-SKKCTCPV 58 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~-~~s~~CP~ 58 (466)
....+|.||+..+.. .++...+..|+|-||..|+.++++.... +....||.
T Consensus 144 ~~~~~C~iC~~e~~~-~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 144 LPKEECGICFVEDPE-AEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred cccccCccCcccccc-HhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 346799999944431 2233336789999999999999884321 33456653
No 195
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.93 E-value=0.23 Score=36.61 Aligned_cols=33 Identities=21% Similarity=0.594 Sum_probs=22.9
Q ss_pred eecCC-CcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 29 ISICG-HVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 29 llpCG-HsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+..|. |..|..|+...+. .+..||+|..+++..
T Consensus 15 Li~C~dHYLCl~CLt~ml~-----~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLS-----RSDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-S-----SSSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhc-----cccCCCcccCcCccc
Confidence 56787 8889999998877 789999999987643
No 196
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.92 E-value=42 Score=35.94 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 92 SRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQL 151 (466)
Q Consensus 92 l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqL 151 (466)
.+.++..++..+....+........+++++.++..+..++.+....+...-+.++.+...
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 455566666666665556666666666666666666655555555554444444444333
No 197
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.91 E-value=61 Score=37.84 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=18.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 229 LMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQ 262 (466)
Q Consensus 229 L~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~ 262 (466)
+...++.|.+-..++..++..++..|..|+++|.
T Consensus 408 k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 408 KNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555666665555553
No 198
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=87.87 E-value=0.37 Score=57.14 Aligned_cols=55 Identities=24% Similarity=0.603 Sum_probs=36.7
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCC-----CCCCCcCcCcccc
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSS-----KKCTCPVCKQRCS 64 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~-----~s~~CP~CR~~~~ 64 (466)
.+-.|-||+-.--. .-+.--+.|||.||..|..+.++.+=.+ +-..||.|..++.
T Consensus 3485 ~DDmCmICFTE~L~--AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALS--AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cCceEEEEehhhhC--CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 45679999865431 0111357899999999999877732222 2357999987665
No 199
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.84 E-value=33 Score=34.63 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 92 SRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKE 129 (466)
Q Consensus 92 l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~Ke 129 (466)
+..++..++..++.+...-.....++..+..++..++.
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~ 89 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRR 89 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHH
Confidence 44455555554444433333333333334444443333
No 200
>PRK01156 chromosome segregation protein; Provisional
Probab=87.60 E-value=63 Score=37.70 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=4.9
Q ss_pred cccccccccc
Q 012292 10 TICSICYEDL 19 (466)
Q Consensus 10 ltCpICLe~f 19 (466)
..||+|....
T Consensus 453 ~~Cp~c~~~~ 462 (895)
T PRK01156 453 SVCPVCGTTL 462 (895)
T ss_pred CCCCCCCCcC
Confidence 3455555444
No 201
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.53 E-value=0.14 Score=57.09 Aligned_cols=53 Identities=30% Similarity=0.656 Sum_probs=41.9
Q ss_pred CCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 6 KFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 6 ~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
..-.+.||||+..+. |+ .+.|-|.||..|+...+.+.+ +...||+|+......
T Consensus 18 ~~k~lEc~ic~~~~~~p~------~~kc~~~~l~~~~n~~f~~~~--~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPS------LLKCDHIFLKFCLNKLFESKK--GPKQCALCKSDIEKR 71 (684)
T ss_pred HhhhccCCceeEEeeccc------hhhhhHHHHhhhhhceeeccC--ccccchhhhhhhhhh
Confidence 345789999999998 64 689999999999987666433 378899999766644
No 202
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.33 E-value=56 Score=36.81 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 012292 159 LDKVTLECLK 168 (466)
Q Consensus 159 VeklkeE~~r 168 (466)
+..+.+...+
T Consensus 124 L~ELE~~le~ 133 (617)
T PF15070_consen 124 LAELEEELER 133 (617)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 203
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.27 E-value=20 Score=31.68 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 236 LGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 236 L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
|......+..-|-+-.+++++|+..|.+++.-+.
T Consensus 80 l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 80 LQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555566666666666655443
No 204
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.13 E-value=22 Score=35.29 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKKAS 286 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~~~ 286 (466)
....|..++..+.....++....+....+...|+.++...+..++....+++.-+..+..++
T Consensus 76 Ek~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~~~p~ 137 (246)
T PF00769_consen 76 EKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAPPPPP 137 (246)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTS--G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 34445555556666666766777778888888888888888888888888777666665444
No 205
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=86.90 E-value=0.45 Score=49.59 Aligned_cols=33 Identities=27% Similarity=0.777 Sum_probs=24.2
Q ss_pred CcccHHHHHHHHHhcCC--------CCCCCCcCcCccccCC
Q 012292 34 HVFHELCLQQWFEYCSS--------SKKCTCPVCKQRCSSS 66 (466)
Q Consensus 34 HsFC~~CL~~wle~~~~--------~~s~~CP~CR~~~~~~ 66 (466)
-..|..|+-+|+..+.. .++..||+||++|...
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 34577999999984331 3567899999998643
No 206
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=86.84 E-value=39 Score=34.46 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012292 243 FSEKLEKAKEKINKLKTRVQELETAVELKDN 273 (466)
Q Consensus 243 ~~~kLek~~~ei~~Lk~~v~eLqk~le~~~n 273 (466)
+-.++.++...+..++..+..+++.+...+.
T Consensus 212 ~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 212 LHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555443
No 207
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.66 E-value=56 Score=36.09 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 225 NYTELMAKCNLLGREKARFS---EKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~---~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
.|.+|...-=.|.+.+..++ =+++-++-+|.+|.+.+.-|...+++
T Consensus 171 eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 171 EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444455555444 56788888888888888877777666
No 208
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.32 E-value=0.5 Score=47.97 Aligned_cols=54 Identities=24% Similarity=0.387 Sum_probs=40.6
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~ 63 (466)
.+.-.+|||--+.-. .+++|+++.|||+.-..-+.+..+ ++..+..||.|-...
T Consensus 333 fHs~FiCPVlKe~~t--~ENpP~ml~CgHVIskeal~~LS~--nG~~~FKCPYCP~~~ 386 (396)
T COG5109 333 FHSLFICPVLKELCT--DENPPVMLECGHVISKEALSVLSQ--NGVLSFKCPYCPEMS 386 (396)
T ss_pred ccceeeccccHhhhc--ccCCCeeeeccceeeHHHHHHHhh--cCcEEeeCCCCCcch
Confidence 456678999777764 346678999999999999888755 333578999995543
No 209
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=86.24 E-value=69 Score=36.71 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHH--------HHHHHHHHHHH
Q 012292 208 NKDTIDVLRKSLVIRNK---NYTELMAKCNLLGREKARFS--------EKLEKAKEKIN 255 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k---~yeeL~~k~e~L~ree~~~~--------~kLek~~~ei~ 255 (466)
..+.++.|..++...-. .--+|+.|+|.|..|.+.+- ++++.++.+|.
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik 705 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIK 705 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 35677777776544333 23457788888888876654 55666666654
No 210
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.12 E-value=70 Score=36.68 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=2.1
Q ss_pred HhhhHH
Q 012292 171 QRNMDL 176 (466)
Q Consensus 171 ~rn~al 176 (466)
++|.++
T Consensus 104 eENisl 109 (717)
T PF09730_consen 104 EENISL 109 (717)
T ss_pred HHHHHH
Confidence 333333
No 211
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.85 E-value=60 Score=35.71 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=31.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012292 228 ELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALK 280 (466)
Q Consensus 228 eL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~ 280 (466)
++...+.++..+-..++...+.+..++.+++..+...+..+...+..+.-.++
T Consensus 369 ~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~k 421 (522)
T PF05701_consen 369 ELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALK 421 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666666666666666665555444433
No 212
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=85.75 E-value=1e+02 Score=38.14 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHH
Q 012292 133 EEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTI 212 (466)
Q Consensus 133 eE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~ 212 (466)
.....+......++.+...+.....+++....+...+..+-..+...+..+. ++.+.|+ .+++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~-------~~~~~l~---------~~~a~ 329 (1353)
T TIGR02680 266 RRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALR-------TRLEALQ---------GSPAY 329 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhc---------CCHHH
Confidence 3334444445555555566666666666666666665555444444444444 4444442 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
.. .+++.......+++....+...+........+++...++..+..++.++.+.++..
T Consensus 330 ~~-~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~ 387 (1353)
T TIGR02680 330 QD-AEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAA 387 (1353)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12222223333333333333333333344556666666666666666666665543
No 213
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.44 E-value=28 Score=31.48 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 235 LLGREKARFSEKLEKAKEKINKLKTRVQ 262 (466)
Q Consensus 235 ~L~ree~~~~~kLek~~~ei~~Lk~~v~ 262 (466)
.+..-......++.+-+.||.+|++++.
T Consensus 123 ~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344555666667777777777653
No 214
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.02 E-value=54 Score=34.43 Aligned_cols=53 Identities=13% Similarity=0.272 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH------HHHHHHHHHHHHHHHHHHHHHH
Q 012292 209 KDTIDVLRKSLVIRNKNYTELMAKCNLLGRE------KARFSEKLEKAKEKINKLKTRV 261 (466)
Q Consensus 209 ~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~re------e~~~~~kLek~~~ei~~Lk~~v 261 (466)
.+.+..+.+.|......+++++..++.-+.. ..+.++.+.+++.||..+.-++
T Consensus 293 s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 293 SEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456667777777777777777755544322 2333344444444444444333
No 215
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.90 E-value=69 Score=35.57 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012292 210 DTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKT 259 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~ 259 (466)
+..+.+...+...++...++..+++.|.+++..++++|++....+..++.
T Consensus 383 e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 383 EELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666677777777777766666666666665553
No 216
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.56 E-value=67 Score=35.14 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Q 012292 140 EALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184 (466)
Q Consensus 140 EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLK 184 (466)
..++++..+........+++.....+..+.++.+..+...+..++
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~q 246 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQ 246 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344444455555555566666666666666666665555555554
No 217
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.48 E-value=52 Score=33.78 Aligned_cols=105 Identities=13% Similarity=0.174 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 160 DKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGRE 239 (466)
Q Consensus 160 eklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~re 239 (466)
+.+.+.+..|.++|..+..+...|+--...-.+.+..|=..-...-..++..+..|...|+.....+......|.+|-.+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666655555555552111111223333111111113466667777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 240 KARFSEKLEKAKEKINKLKTRVQEL 264 (466)
Q Consensus 240 e~~~~~kLek~~~ei~~Lk~~v~eL 264 (466)
.+.+.+++.....|.++|...+...
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7777777777777766666555443
No 218
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.42 E-value=1.3 Score=43.84 Aligned_cols=53 Identities=23% Similarity=0.463 Sum_probs=39.0
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.....|||---.|... ..-..+-+|||+|-..-+.+. ....|++|...+...+
T Consensus 109 ~a~fiCPvtgleMng~-~~F~~l~~CGcV~SerAlKei-------kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGK-YRFCALRCCGCVFSERALKEI-------KASVCHVCGAAYQEDD 161 (293)
T ss_pred cceeecccccceecce-EEEEEEeccceeccHHHHHHh-------hhccccccCCcccccC
Confidence 3457899876666521 122356789999999998887 4589999999887665
No 219
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.23 E-value=30 Score=30.80 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 237 GREKARFSEKLEKAKEKINKLKTRV 261 (466)
Q Consensus 237 ~ree~~~~~kLek~~~ei~~Lk~~v 261 (466)
.++...+..++..+..++.-|...+
T Consensus 104 e~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 104 EKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443
No 220
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=84.17 E-value=81 Score=35.77 Aligned_cols=11 Identities=9% Similarity=0.377 Sum_probs=5.9
Q ss_pred HHHHHHHHHhh
Q 012292 260 RVQELETAVEL 270 (466)
Q Consensus 260 ~v~eLqk~le~ 270 (466)
+++.||.+|..
T Consensus 645 QIE~lQ~tl~~ 655 (961)
T KOG4673|consen 645 QIEALQETLSK 655 (961)
T ss_pred HHHHHHHHHhh
Confidence 45556655554
No 221
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.02 E-value=0.23 Score=49.82 Aligned_cols=39 Identities=31% Similarity=0.703 Sum_probs=26.1
Q ss_pred ccccccc-ccccCcceeecCCCcc-cHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 14 ICYEDLK-PIVEDLQVISICGHVF-HELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 14 ICLe~f~-P~~~~~~~llpCGHsF-C~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.|--=|+ |. +. ++++|||.. |..|-.+. ..||+||+.+.
T Consensus 302 LC~ICmDaP~--DC-vfLeCGHmVtCt~CGkrm---------~eCPICRqyi~ 342 (350)
T KOG4275|consen 302 LCAICMDAPR--DC-VFLECGHMVTCTKCGKRM---------NECPICRQYIV 342 (350)
T ss_pred HHHHHhcCCc--ce-EEeecCcEEeehhhcccc---------ccCchHHHHHH
Confidence 3444455 42 33 468999955 99996543 47999998654
No 222
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.99 E-value=51 Score=33.27 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=31.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 012292 102 KVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKV 162 (466)
Q Consensus 102 kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVekl 162 (466)
.++.+...|+.++...+.-..++..+++...-.......-.+....+.+.+..+...|..+
T Consensus 40 QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~l 100 (307)
T PF10481_consen 40 QLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFL 100 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHH
Confidence 5666777777777666666666666654322222222222233334445555554444444
No 223
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.95 E-value=33 Score=31.14 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012292 246 KLEKAKEKINKLKTRVQ 262 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~ 262 (466)
+|..++.....+..+|+
T Consensus 102 kl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 102 KLREADVKAEHFERKVK 118 (143)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 33333333333333333
No 224
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=83.76 E-value=0.34 Score=55.10 Aligned_cols=15 Identities=7% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 012292 211 TIDVLRKSLVIRNKN 225 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~ 225 (466)
.++.+++.+..++..
T Consensus 364 qle~~k~qi~eLe~~ 378 (713)
T PF05622_consen 364 QLEEYKKQIQELEQK 378 (713)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 225
>PF14182 YgaB: YgaB-like protein
Probab=83.74 E-value=8.2 Score=31.57 Aligned_cols=54 Identities=22% Similarity=0.498 Sum_probs=46.7
Q ss_pred HHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 012292 231 AKCNLLGREKARFS--EKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKK 284 (466)
Q Consensus 231 ~k~e~L~ree~~~~--~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~ 284 (466)
.+|.+..++..... .+|.....||...+..++++++..+.-.+++++.-..+++
T Consensus 24 ERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeVI~sy~~~~~ 79 (79)
T PF14182_consen 24 ERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFEKQTEEVIRSYQSEEK 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56777777777766 7889999999999999999999999999999998777654
No 226
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.68 E-value=0.69 Score=46.49 Aligned_cols=36 Identities=22% Similarity=0.563 Sum_probs=26.9
Q ss_pred CCCcccHHHHHHHHHhcCC--------CCCCCCcCcCccccCCC
Q 012292 32 CGHVFHELCLQQWFEYCSS--------SKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 32 CGHsFC~~CL~~wle~~~~--------~~s~~CP~CR~~~~~~~ 67 (466)
|....|.+||-+|+..... .++.+||.||+.+...+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 5566788999999873322 26789999999987554
No 227
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.94 E-value=61 Score=33.38 Aligned_cols=10 Identities=40% Similarity=0.601 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 012292 256 KLKTRVQELE 265 (466)
Q Consensus 256 ~Lk~~v~eLq 265 (466)
+|+.++..||
T Consensus 275 ~Lk~~~~~Le 284 (312)
T smart00787 275 KLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 228
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.91 E-value=78 Score=33.93 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 98 ILEVKVSRLHTVLESQGKEIKEINEELCLCK 128 (466)
Q Consensus 98 rLe~kl~~L~~~Le~~~~~lk~L~eel~~~K 128 (466)
.....+..+...+....++...|+.++..++
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e 72 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLE 72 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333
No 229
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=81.57 E-value=79 Score=33.77 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHhccc
Q 012292 246 KLEKAKEKINKLKTRVQELETAVEL--KDNEVLRALKVSKK 284 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~eLqk~le~--~~ne~l~~l~~~~~ 284 (466)
|+.+...|-...++....||..|.. -.+|+|.|...++-
T Consensus 279 k~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEse 319 (552)
T KOG2129|consen 279 KLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESE 319 (552)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344444444444444445544443 33456666655553
No 230
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=81.30 E-value=95 Score=34.50 Aligned_cols=115 Identities=20% Similarity=0.249 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHH
Q 012292 144 QKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRN 223 (466)
Q Consensus 144 ~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~ 223 (466)
.+..++.++....+++..+..+...|......-..+...|+ +.+..++...+.+...=..+++.|-+.|....
T Consensus 102 ~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~-------~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie 174 (560)
T PF06160_consen 102 AIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELK-------EKYRELRKELLAHSFSYGPAIEELEKQLENIE 174 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhchhHHHHHHHHHHHH
Confidence 33344555555555555555555555554444456666677 66666655555544455566777777666666
Q ss_pred H---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 224 K---NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 224 k---~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
. .+++|+. ..+-..+..-|.+++..+..|+..+..+=..+..
T Consensus 175 ~~F~~f~~lt~-----~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~ 219 (560)
T PF06160_consen 175 EEFSEFEELTE-----NGDYLEAREILEKLKEETDELEEIMEDIPKLYKE 219 (560)
T ss_pred HHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5 4555554 3333333344444444444444444443333333
No 231
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.93 E-value=49 Score=30.91 Aligned_cols=7 Identities=29% Similarity=0.264 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 012292 225 NYTELMA 231 (466)
Q Consensus 225 ~yeeL~~ 231 (466)
.|+++.+
T Consensus 138 ~~~~~~~ 144 (191)
T PF04156_consen 138 SIKELEK 144 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 232
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=80.85 E-value=1.2e+02 Score=35.24 Aligned_cols=14 Identities=7% Similarity=0.166 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 012292 115 KEIKEINEELCLCK 128 (466)
Q Consensus 115 ~~lk~L~eel~~~K 128 (466)
.+.+.+++.+....
T Consensus 120 ~ekq~lQ~ti~~~q 133 (1265)
T KOG0976|consen 120 MEKQKLQDTIQGAQ 133 (1265)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444333333
No 233
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.79 E-value=0.86 Score=48.10 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=28.1
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHH
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFE 46 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle 46 (466)
+..||.|.-.+.-.....+++..|||-||+.|...|..
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~ 343 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKT 343 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhh
Confidence 56788888777622234445556999999999999976
No 234
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.69 E-value=77 Score=33.08 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL-KDNEVLR 277 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~-~~ne~l~ 277 (466)
..+++....++|..+..+..+.-..++.|...|++-|+.|+..+.- +.|+.|.
T Consensus 246 ~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeqLk 299 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQLK 299 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcccccc
Confidence 4445555445555444444444445677788888888888877766 6666443
No 235
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=80.48 E-value=66 Score=32.20 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=11.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELM 230 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~ 230 (466)
+...+-.|..+|+--++.-++|+
T Consensus 234 s~Gria~Le~eLAmQKs~seElk 256 (330)
T KOG2991|consen 234 SEGRIAELEIELAMQKSQSEELK 256 (330)
T ss_pred hcccHHHHHHHHHHHHhhHHHHH
Confidence 44445555555555444444444
No 236
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=80.47 E-value=1.4e+02 Score=36.03 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhh
Q 012292 257 LKTRVQELETAVEL 270 (466)
Q Consensus 257 Lk~~v~eLqk~le~ 270 (466)
+..+++.++..++.
T Consensus 672 ~e~~lk~~q~~~eq 685 (1317)
T KOG0612|consen 672 LERKLKMLQNELEQ 685 (1317)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 237
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.45 E-value=1.3 Score=43.63 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=31.7
Q ss_pred CCCCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHH
Q 012292 3 IENKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFE 46 (466)
Q Consensus 3 ~~~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle 46 (466)
.++....--|+.||..+. |+ +.|=||.||..||..++-
T Consensus 37 rDsiK~FdcCsLtLqPc~dPv------it~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 37 RDSIKPFDCCSLTLQPCRDPV------ITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccccCCcceeeeecccccCCc------cCCCCeeeeHHHHHHHHH
Confidence 455666778999999998 65 789999999999998755
No 238
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=80.18 E-value=1.4 Score=31.85 Aligned_cols=41 Identities=27% Similarity=0.630 Sum_probs=20.7
Q ss_pred cccccccccccccCccee--ecCCCcccHHHHHHHHHhcCCCCCCCCcCc
Q 012292 12 CSICYEDLKPIVEDLQVI--SICGHVFHELCLQQWFEYCSSSKKCTCPVC 59 (466)
Q Consensus 12 CpICLe~f~P~~~~~~~l--lpCGHsFC~~CL~~wle~~~~~~s~~CP~C 59 (466)
|.+|-+...-. ..- ..|+=.+|..|+..++... ....||.|
T Consensus 1 C~~C~~iv~~G----~~C~~~~C~~r~H~~C~~~y~r~~---~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG----QRCSNRDCNVRLHDDCFKKYFRHR---SNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSS----EE-SS--S--EE-HHHHHHHTTT----SS-B-TTT
T ss_pred CcccchhHeee----ccCCCCccCchHHHHHHHHHHhcC---CCCCCcCC
Confidence 67888887611 011 2488899999999998832 22379988
No 239
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=80.09 E-value=57 Score=31.22 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 012292 103 VSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNM 174 (466)
Q Consensus 103 l~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~ 174 (466)
+..|...+......++.+..+...++..-......+...-..-..+.+++..-.+|+..+.....+.+....
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r 85 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQER 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555544442211122222111122224445555555555555554444444433
No 240
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.66 E-value=1.3 Score=47.61 Aligned_cols=54 Identities=24% Similarity=0.471 Sum_probs=37.0
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCC-C--CCCc--CcCcccc
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSK-K--CTCP--VCKQRCS 64 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~-s--~~CP--~CR~~~~ 64 (466)
.....|.||.+.+.. ....+.|||.||..|...++......+ . .+|| -|+..+.
T Consensus 68 ~~~~~c~ic~~~~~~----~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~ 126 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG----EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVG 126 (444)
T ss_pred CccccCCcccCCCcc----hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCC
Confidence 456899999999963 124679999999999999887433211 1 4554 4555444
No 241
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.65 E-value=26 Score=27.97 Aligned_cols=57 Identities=26% Similarity=0.249 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+|+..+-.....+.-.......|.++-..+...|..+-.++.+|+.++..|++.|+.
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344566777777899999999999999999999999876
No 242
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=79.49 E-value=1.2e+02 Score=34.74 Aligned_cols=11 Identities=55% Similarity=0.773 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 012292 245 EKLEKAKEKIN 255 (466)
Q Consensus 245 ~kLek~~~ei~ 255 (466)
++++++.++|+
T Consensus 649 ~KIe~L~~eIk 659 (762)
T PLN03229 649 EKIESLNEEIN 659 (762)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 243
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=79.24 E-value=1.3e+02 Score=34.86 Aligned_cols=32 Identities=34% Similarity=0.363 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKAR 242 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~ 242 (466)
.+..|..+|...+...+++..+|..|+-+..+
T Consensus 681 Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 681 KISSLEEELEKERALSEELEAKCRELEEELER 712 (769)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh
Confidence 34445555555555555555555555444433
No 244
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=78.71 E-value=1e+02 Score=33.37 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=21.3
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 237 GREKARFS-EKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 237 ~ree~~~~-~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
+.+..++. ..|+-++.|.+..++++..||.++..++.+
T Consensus 469 kgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 469 KGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444 566666666666666666666666654444
No 245
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=78.59 E-value=3 Score=34.06 Aligned_cols=56 Identities=23% Similarity=0.478 Sum_probs=22.1
Q ss_pred CCCCCccccccccccc-ccccCcce-eecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQV-ISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~-llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.......|.||-+.+- .....++. .-.|+--.|..|.+-=.. .++..||.|+.+..
T Consensus 5 k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk----eg~q~CpqCkt~yk 62 (80)
T PF14569_consen 5 KNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK----EGNQVCPQCKTRYK 62 (80)
T ss_dssp S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH----TS-SB-TTT--B--
T ss_pred hhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh----cCcccccccCCCcc
Confidence 4456779999999987 22223321 234677779999874333 37899999998776
No 246
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.89 E-value=20 Score=34.63 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=27.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 207 NNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 207 ~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
...+.+..|.+++...+..+.++...-+ .....+.+++..++.++.+|+++.++|++.|+.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655555553222 222222233334444444444444444444433
No 247
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.73 E-value=1.6e+02 Score=35.10 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=14.7
Q ss_pred cccccccCCCCcccccCCCceEEE
Q 012292 431 PIVNIKKNPPSPVSLSKPGIFLLV 454 (466)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~ 454 (466)
|+=-||-.|+ .-.+-.||+.-||
T Consensus 561 Pld~i~v~~~-~e~lr~~~g~rlv 583 (1141)
T KOG0018|consen 561 PLDSIRVKPV-NEKLRELGGVRLV 583 (1141)
T ss_pred chhhhhcCcc-cccccCcCCeEEE
Confidence 5666666665 5566688885554
No 248
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.72 E-value=55 Score=29.71 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=6.6
Q ss_pred HHHHHHHhhHHHHHHH
Q 012292 147 SVEQLLHSKSQELDKV 162 (466)
Q Consensus 147 sLeqLL~~q~eEVekl 162 (466)
.|.+-+..+..+|+.+
T Consensus 39 sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444444
No 249
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=76.92 E-value=94 Score=31.97 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 012292 90 EVSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLC 127 (466)
Q Consensus 90 e~l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~ 127 (466)
+.+...+..|+.....+...+...+.....|..++..+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~l 60 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRAL 60 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444445544444444444444433
No 250
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.62 E-value=1.5e+02 Score=34.29 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 012292 156 SQELDKVTLECLKLKQRNMDLAKEL 180 (466)
Q Consensus 156 ~eEVeklkeE~~rLq~rn~alakeL 180 (466)
.+++..+..+..++..++.-+.+++
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444333333
No 251
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.32 E-value=1.8e+02 Score=34.81 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=37.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 012292 231 AKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSK 283 (466)
Q Consensus 231 ~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~ 283 (466)
.+.+.+..+....++.+..+.+++++|...+..++..++....|....|..-|
T Consensus 849 ~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ck 901 (1141)
T KOG0018|consen 849 SKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCK 901 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 44555555666666777777788888888888888888887777766666655
No 252
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=76.22 E-value=70 Score=32.23 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELET 266 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk 266 (466)
.|+..+.......+++..+++-+..++..+..|+++.+.|+++.+++++.||+
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555556666666666666666666666666666666666665553
No 253
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.98 E-value=1.2e+02 Score=32.75 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 207 NNKDTIDVLRKSLVIRNKNYTELMAKCNL 235 (466)
Q Consensus 207 ~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~ 235 (466)
...+++..-.+.+......+.+|..++..
T Consensus 442 khddhvR~aykllt~iH~nc~ei~E~i~~ 470 (521)
T KOG1937|consen 442 KHDDHVRLAYKLLTRIHLNCMEILEMIRE 470 (521)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777788888766554
No 254
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=75.96 E-value=1.5e+02 Score=33.79 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012292 90 EVSRAEVKILEVKVSRLHTVLESQGKEIKE 119 (466)
Q Consensus 90 e~l~~El~rLe~kl~~L~~~Le~~~~~lk~ 119 (466)
...+.+++++...+..|...|+.....+..
T Consensus 342 d~~q~eLdK~~~~i~~Ln~~leaReaqll~ 371 (961)
T KOG4673|consen 342 DDVQLELDKTKKEIKMLNNALEAREAQLLA 371 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666654444333
No 255
>PLN02189 cellulose synthase
Probab=75.75 E-value=2.5 Score=49.43 Aligned_cols=53 Identities=26% Similarity=0.564 Sum_probs=35.9
Q ss_pred CCccccccccccc-ccccCccee-ecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 8 GKTICSICYEDLK-PIVEDLQVI-SICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~l-lpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
....|.||-|.+. .....+... -.||--.|..|.+-=. ..++..||+|+.+..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer----~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYER----REGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhh----hcCCccCcccCCchh
Confidence 4459999999987 222233322 2366668999985322 247899999998876
No 256
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=75.51 E-value=1e+02 Score=31.65 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=15.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 012292 207 NNKDTIDVLRKSLVIRNKNYTELMA 231 (466)
Q Consensus 207 ~~~e~~d~Lkk~l~~~~k~yeeL~~ 231 (466)
.+++++.+.+++|-.+.+....|..
T Consensus 234 kSNe~F~tfk~Emekm~Kk~kklEK 258 (309)
T PF09728_consen 234 KSNEVFETFKKEMEKMSKKIKKLEK 258 (309)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777777665555444443
No 257
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=75.17 E-value=71 Score=29.69 Aligned_cols=109 Identities=15% Similarity=0.241 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHH
Q 012292 145 KVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRNK 224 (466)
Q Consensus 145 ~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~k 224 (466)
++.++..+...-.+++.+.......+.+-+.+.+.+.... |+++. ..-+.+..+...+.....
T Consensus 36 L~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ys--------E~dik---------~AYe~A~~lQ~~L~~~re 98 (159)
T PF05384_consen 36 LEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYS--------EEDIK---------EAYEEAHELQVRLAMLRE 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--------HHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666655555444444443333 33333 245666777788888888
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
...+|..+=+.|++....+..-+++|+.=...+.--+.-|...|..
T Consensus 99 ~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~ 144 (159)
T PF05384_consen 99 REKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQ 144 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8888888888888888777777777776666655555555555444
No 258
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=74.41 E-value=1.1e+02 Score=31.37 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=17.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 229 LMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 229 L~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
+..+.+.+..+...+..+......++..++..+.++++.+
T Consensus 205 ~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 205 LRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 259
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=74.15 E-value=0.25 Score=39.48 Aligned_cols=41 Identities=29% Similarity=0.625 Sum_probs=24.6
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
++.||.|...+.+. =||.+|..|-..+. ....||.|..++.
T Consensus 1 e~~CP~C~~~L~~~---------~~~~~C~~C~~~~~------~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ---------GGHYHCEACQKDYK------KEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEE---------TTEEEETTT--EEE------EEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEEe---------CCEEECccccccce------ecccCCCcccHHH
Confidence 46899999999763 17888999977542 3578999998875
No 260
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.75 E-value=1e+02 Score=30.98 Aligned_cols=40 Identities=18% Similarity=0.103 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 235 LLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 235 ~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
.|..........+-.+..+..++..+...|++.....++.
T Consensus 187 ~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~qka~a~a~ 226 (265)
T COG3883 187 SLNSQKAEKNALIAALAAKEASALGEKAALEEQKALAEAA 226 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444333333333
No 261
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.55 E-value=2e+02 Score=34.15 Aligned_cols=7 Identities=29% Similarity=0.767 Sum_probs=4.1
Q ss_pred ccHHHHH
Q 012292 36 FHELCLQ 42 (466)
Q Consensus 36 FC~~CL~ 42 (466)
.|.-||-
T Consensus 59 VcAIcLg 65 (1072)
T KOG0979|consen 59 VCAICLG 65 (1072)
T ss_pred HHHHHHH
Confidence 4666664
No 262
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.54 E-value=31 Score=35.78 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHhccccchhHHh
Q 012292 226 YTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL---KDNEVLRALKVSKKASQKEEI 291 (466)
Q Consensus 226 yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~---~~ne~l~~l~~~~~~~~~~~~ 291 (466)
.+++..+.+.|+|.+...+.-.++++.+++.|+.++..|++..+. +..|.|.++.-.+..+--+.+
T Consensus 227 me~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~ 295 (365)
T KOG2391|consen 227 MERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAI 295 (365)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhh
Confidence 334444455555555555556666666677777777777766555 455555555554444433333
No 263
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=73.26 E-value=2.5 Score=43.37 Aligned_cols=51 Identities=27% Similarity=0.607 Sum_probs=35.5
Q ss_pred Cccccccccccccc-ccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 9 KTICSICYEDLKPI-VEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 9 eltCpICLe~f~P~-~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
-..||||.+..+.. ...++ .||||..|..|+..... +...||.||.+....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP--~~~~~~~~l~~~~t~~~-----~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLP--CPCGFRLCLFCHKTISD-----GDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCccccccccccc--ccccccchhhhhhcccc-----cCCCCCccCCccccC
Confidence 46899999988511 11122 46888888888777655 788999999665533
No 264
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.24 E-value=39 Score=27.23 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 223 NKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 223 ~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
-....+||..-+.|.+.+.....-+-++..++..+...+..|...++..+.+
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666676666666666666666666666666666665444
No 265
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=73.23 E-value=1.1e+02 Score=31.19 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDN 273 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~n 273 (466)
+|..-..+++........+..+|-.+..+..-|++++...++....+++
T Consensus 201 m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek 249 (305)
T PF14915_consen 201 MYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEK 249 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455554444455566666666777777777777666665553
No 266
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=73.03 E-value=58 Score=30.86 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=26.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHH
Q 012292 102 KVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDL 176 (466)
Q Consensus 102 kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~al 176 (466)
.+..+...+......+..+..++..+..++......+.++-+..+.++..+..+.-++..+.+...+++.+|..|
T Consensus 103 ~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 103 ELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333333333333333333333333333333333334444444444433
No 267
>PRK04863 mukB cell division protein MukB; Provisional
Probab=72.93 E-value=2.6e+02 Score=35.09 Aligned_cols=33 Identities=9% Similarity=0.034 Sum_probs=11.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 229 LMAKCNLLGREKARFSEKLEKAKEKINKLKTRV 261 (466)
Q Consensus 229 L~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v 261 (466)
|..+.+...........++...+.++..++...
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~l 472 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAH 472 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 268
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=72.60 E-value=50 Score=31.28 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=36.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 012292 96 VKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNM 174 (466)
Q Consensus 96 l~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~ 174 (466)
+..++..+......+.....++..+..++..+...+++...........+..++..+....+.+..+..|...|.+|.|
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444555555555555556666666666666655
No 269
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=72.28 E-value=35 Score=28.93 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFSE---KLEKAKEKINKLKTRVQELETAVELKDNEVLRAL 279 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~---kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l 279 (466)
.|-..........++|..+-+.+.++.....+ +.+.+..+...+++++..++..+...+.++-.-+
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555667777777777777666663 4677778888888888888888888777754433
No 270
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=71.81 E-value=64 Score=35.09 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 224 KNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 224 k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+.+++-.+++..+..|..+++..|.|+..+..-|.-++...++.+..
T Consensus 35 k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda 81 (604)
T KOG3564|consen 35 KDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDA 81 (604)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Confidence 36666777777777777777777777777777776666666665544
No 271
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.57 E-value=71 Score=32.85 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 012292 236 LGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKKAS 286 (466)
Q Consensus 236 L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~~~ 286 (466)
|..++...-+.+.....+...+.++.+.++..++...+. |.+|++.--++
T Consensus 90 l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~-L~~L~ktNv~n 139 (314)
T PF04111_consen 90 LDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQ-LDRLRKTNVYN 139 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHT--TTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCchh
Confidence 333344433444444444444444445554444443333 44555544333
No 272
>PLN02436 cellulose synthase A
Probab=71.46 E-value=3.7 Score=48.24 Aligned_cols=53 Identities=21% Similarity=0.472 Sum_probs=35.8
Q ss_pred CCccccccccccc-ccccCccee-ecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 8 GKTICSICYEDLK-PIVEDLQVI-SICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~l-lpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
....|.||-|.+. .+...+... -.||--.|..|.+-=. ..++..||+|+.+..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer----~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYER----REGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhh----hcCCccCcccCCchh
Confidence 3459999999986 222233322 2366668999985322 247899999998876
No 273
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=71.07 E-value=1.1e+02 Score=30.06 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=63.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEK-AKEKINKLKTRVQELETAVELKDNEVLRALKVSKK 284 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek-~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~ 284 (466)
.......+..+...+...|.+|...++.+.+.......+++. .-.||..|+.-+......-+..+++++.+|..--+
T Consensus 159 ~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~ 236 (247)
T PF06705_consen 159 ENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSDDDIVQALNHYTK 236 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344556667777788889999999999888877777788888 88899999999998888888899999999876443
No 274
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.96 E-value=2.1 Score=41.37 Aligned_cols=32 Identities=25% Similarity=0.621 Sum_probs=23.0
Q ss_pred cceeecCCC-cccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 26 LQVISICGH-VFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 26 ~~~llpCGH-sFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
...++||.| .+|..|-.. ...||+|+.+....
T Consensus 170 ~VlllPCrHl~lC~~C~~~---------~~~CPiC~~~~~s~ 202 (207)
T KOG1100|consen 170 TVLLLPCRHLCLCGICDES---------LRICPICRSPKTSS 202 (207)
T ss_pred eEEeecccceEeccccccc---------CccCCCCcChhhce
Confidence 356799998 668888322 56799999876543
No 275
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=70.87 E-value=87 Score=28.82 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLK-TRVQELETAV 268 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk-~~v~eLqk~l 268 (466)
....|...|..-.+.|++...-.+...++...+..+|-.+-.+-++++ +++++|-+.+
T Consensus 99 eLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~i 157 (159)
T PF04949_consen 99 ELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKEI 157 (159)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445677777777778888887778888888888888888887777765 3345555544
No 276
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=70.78 E-value=1.4e+02 Score=31.03 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=10.8
Q ss_pred cccCCCceEEEEEe
Q 012292 444 SLSKPGIFLLVQFQ 457 (466)
Q Consensus 444 ~~~~~~~~~~~~~~ 457 (466)
...+||-++-|.+.
T Consensus 385 ~~l~~Gm~~~v~i~ 398 (423)
T TIGR01843 385 LELSPGMPVTADIK 398 (423)
T ss_pred CccCCCCEEEEEEE
Confidence 45789999888764
No 277
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=70.72 E-value=1.4e+02 Score=31.19 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 209 KDTIDVLRKSLVIRNK---NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 209 ~e~~d~Lkk~l~~~~k---~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+-+...|..++..+++ .+++|..+.+.|..+....++.|..+...++.+.+-..-+|+.+..
T Consensus 90 ~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 90 QLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 3378888889988885 6777778888888888887788888888888888888888888866
No 278
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=70.54 E-value=49 Score=25.83 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=30.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 231 AKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 231 ~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
...++.......+.++|+.++..+..|..+|..|++.+++
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555689999999999999999999998876
No 279
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=68.45 E-value=4.7 Score=47.48 Aligned_cols=54 Identities=19% Similarity=0.503 Sum_probs=35.9
Q ss_pred CCCccccccccccc-ccccCcc-eeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 7 FGKTICSICYEDLK-PIVEDLQ-VISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 7 ~~eltCpICLe~f~-P~~~~~~-~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.....|.||-|.+. .+...+. ..-.||--.|..|.+- .-+.++..||+|+.+..
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEY----Er~eG~q~CPqCktrYk 70 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEY----ERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhhh----hhhcCCccCCccCCchh
Confidence 34459999999987 2222222 2234666689999852 22347899999998876
No 280
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=68.43 E-value=35 Score=34.06 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=56.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
..+.+..|-+.+.......-+|..+++.|..|+.+++=.+|....+++.++++-.++-.+|+.+
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888899999999999999999999999999999999999999999874
No 281
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=67.65 E-value=1.8e+02 Score=32.77 Aligned_cols=82 Identities=28% Similarity=0.179 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHH---HHHHHHhccccchhHHhhhcCCCCC----------ccccccccCChhhhhhccCCC
Q 012292 254 INKLKTRVQELETAVELKDNE---VLRALKVSKKASQKEEILKGATEDN----------SISLCTNNVSLEDQREQHSVP 320 (466)
Q Consensus 254 i~~Lk~~v~eLqk~le~~~ne---~l~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 320 (466)
+++||.-++.+..+-+.++.- +-..|..=++....-++.+|-.+++ |++-.++.=-++.-+....+|
T Consensus 276 d~~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~iv~i~qg~~~~~~s~~e~~p~s~~S~~n~~~gp~~~~~~s~~p 355 (861)
T KOG1899|consen 276 DNTLKNALESLMRANEQKDRFIESLRNYLNNYDKNAQIVRILQGEPSDSMSHSESFPVSSSSTTNNGKGPRSTVQSSSSP 355 (861)
T ss_pred HHHHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhhhhhhcCCCcccccccccccccccccccccCCccccccCCCCC
Confidence 344455455544444443332 2233444455556666777765222 111111111134444555666
Q ss_pred cccccCCCCCCCCCc
Q 012292 321 IYNLDWTSRVTNDFS 335 (466)
Q Consensus 321 ~~~~~~~~~~~~~~~ 335 (466)
-..++..+-.++..+
T Consensus 356 ~~ssp~v~P~~~~~S 370 (861)
T KOG1899|consen 356 NMSSPAVSPQHNWSS 370 (861)
T ss_pred cCCCCCCCCcccccc
Confidence 666666666655433
No 282
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=67.64 E-value=2.7e+02 Score=33.29 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=8.5
Q ss_pred HHHHHHHHHhcCCCCCCCC
Q 012292 38 ELCLQQWFEYCSSSKKCTC 56 (466)
Q Consensus 38 ~~CL~~wle~~~~~~s~~C 56 (466)
.+=|.+.++..=+|.+.+|
T Consensus 344 ESKLTRLLQDSLGGkTKT~ 362 (1041)
T KOG0243|consen 344 ESKLTRLLQDSLGGKTKTC 362 (1041)
T ss_pred HHHHHHHHHHHhCCCceeE
Confidence 3344555553333444555
No 283
>PF14992 TMCO5: TMCO5 family
Probab=67.51 E-value=1.5e+02 Score=30.16 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 92 SRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCK 128 (466)
Q Consensus 92 l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~K 128 (466)
+.+...++-.+..++-..++.....++.+..++...-
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~ 45 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMD 45 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555656666677777777777788777776444
No 284
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.50 E-value=2.5e+02 Score=32.74 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=5.3
Q ss_pred chhHHhhhcCC
Q 012292 286 SQKEEILKGAT 296 (466)
Q Consensus 286 ~~~~~~~~~~~ 296 (466)
.+..+..+|..
T Consensus 832 ~a~~le~m~~~ 842 (970)
T KOG0946|consen 832 AADSLESMGST 842 (970)
T ss_pred hhhhhHHhhcc
Confidence 33444555555
No 285
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=67.44 E-value=64 Score=25.96 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
+.|-..+...-..+.-|..+++.|..+-..+...-+.+..++.+|+..-..|+..+.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333333333333344444444444333334444444555555555555544443
No 286
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.40 E-value=51 Score=33.87 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKL 257 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~L 257 (466)
.+..++....+..+.+.+..+.|+++.....+++..++.+...|
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444443344333333333
No 287
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=67.23 E-value=38 Score=27.92 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Q 012292 143 RQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184 (466)
Q Consensus 143 k~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLK 184 (466)
++...|+..|..+...++.+++++.+|...|.-|..|+..|-
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467788888889999999999999999999999988886
No 288
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=67.15 E-value=1.6e+02 Score=30.59 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+-|.+...+|.+|+.+|++|.-++..
T Consensus 194 ~ml~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 194 SMLDKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677899999999988777665
No 289
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=66.84 E-value=33 Score=31.71 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhh
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKL--EKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kL--ek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
....|...+..+...+.+|...+..|..+...+.+.+ +.+..+|..|++++..|+..|+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555444332 44555555555555555555544
No 290
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=66.75 E-value=1.3e+02 Score=29.21 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 246 KLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
++..+...+.+..-++..|+..|+.
T Consensus 162 e~~aLqa~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 162 ELLALQASLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555556666666666666
No 291
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=66.68 E-value=1.1e+02 Score=28.39 Aligned_cols=28 Identities=32% Similarity=0.636 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVELKD 272 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~~~ 272 (466)
.+|.+...++..+++.+..|+..++..+
T Consensus 145 ~Dy~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 145 RDYDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666655543
No 292
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.64 E-value=2.6 Score=42.40 Aligned_cols=49 Identities=24% Similarity=0.425 Sum_probs=31.7
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCc
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCP 57 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP 57 (466)
.-+-|.+|-+.+.++ ..+++-.-=.|-||..|-...++.....+-..||
T Consensus 267 apLcCTLC~ERLEDT-HFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCP 315 (352)
T KOG3579|consen 267 APLCCTLCHERLEDT-HFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCP 315 (352)
T ss_pred CceeehhhhhhhccC-ceeecCCCcccceecccCHHHHHhhcCCCceeCC
Confidence 348899999999753 1222222236999999999888744433344455
No 293
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.53 E-value=1.3 Score=44.60 Aligned_cols=51 Identities=18% Similarity=0.367 Sum_probs=38.8
Q ss_pred CCccccccccccc-ccccCcceeec--------CCCcccHHHHHHHHHhcCCCCCCCCcCcCcc
Q 012292 8 GKTICSICYEDLK-PIVEDLQVISI--------CGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~llp--------CGHsFC~~CL~~wle~~~~~~s~~CP~CR~~ 62 (466)
.+..|.||...|. ......+.++. |||+.|..|+...+.. ....||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~----~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQ----AGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHH----hhhcCCcccce
Confidence 3467999999998 32334555667 9999999999987662 23899999875
No 294
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=66.26 E-value=58 Score=33.42 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEV 275 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~ 275 (466)
.+|.|+..|-.+...+-++ .|+.....++++..+..+..|+.++.+|+..|..++--+
T Consensus 113 qvd~Lkd~lee~eE~~~~~-------~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQL-------QREYREKIRELERQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444444444 444444446778888888888888888888887666543
No 295
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.24 E-value=1.4e+02 Score=29.42 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 218 SLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 218 ~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
++...+..|++++.|.+.+.++...+.+.|++...+.+.+.++++.|+......
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444667788888888888888888888888888888888888888887765543
No 296
>PLN02939 transferase, transferring glycosyl groups
Probab=66.13 E-value=2.9e+02 Score=33.00 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=30.8
Q ss_pred HHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Q 012292 227 TELMAKCNLLGREKARFS-EKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVS 282 (466)
Q Consensus 227 eeL~~k~e~L~ree~~~~-~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~ 282 (466)
.+|..++..|+.....+. .|+. ...++.+.++++-++..|...+.|+.+.+...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (977)
T PLN02939 327 QDLRDKVDKLEASLKEANVSKFS--SYKVELLQQKLKLLEERLQASDHEIHSYIQLY 381 (977)
T ss_pred hHHHHHHHHHHHHHHHhhHhhhh--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334455555544444433 3331 22345566777888888888787877776543
No 297
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=65.88 E-value=2.3e+02 Score=31.83 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+..++...+|..|..++...-..+++
T Consensus 310 ~e~e~~~~qI~~le~~l~~~~~~lee 335 (629)
T KOG0963|consen 310 EEREKHKAQISALEKELKAKISELEE 335 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555554444444444433
No 298
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=65.74 E-value=2.2e+02 Score=31.53 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 225 NYTELMAKCNLLGREKARFS---EKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~---~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
..+++....+.+.++..... ..++.++.++.++++++..+-..|...
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444444444322 234444444444444444444444333
No 299
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=65.08 E-value=2.1e+02 Score=31.03 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
+..+|....++|.--..+...-|+..-.+...|-..++-||+..+
T Consensus 425 s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N 469 (554)
T KOG4677|consen 425 SVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN 469 (554)
T ss_pred hHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence 555666666777766667677788888888888888888888776
No 300
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.92 E-value=1.5e+02 Score=29.24 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 226 YTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 226 yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
+.++..-++.|+.....+..+-++....|.++.+.+.-|+..++..
T Consensus 55 LrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 55 LRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555443
No 301
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=64.64 E-value=1.6e+02 Score=29.54 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 012292 252 EKINKLKTRVQELETAVELKD 272 (466)
Q Consensus 252 ~ei~~Lk~~v~eLqk~le~~~ 272 (466)
+...+||.+-..|...|.+++
T Consensus 164 esvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 164 ESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554433
No 302
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=64.48 E-value=88 Score=26.47 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 214 VLRKSLVIRNKNYTELM---AKCNLLGREKARFSEKLEKAKEKINKLKTRVQ 262 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~---~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~ 262 (466)
.|.+.+..++..|++|. .++..+......+-.-...++.+..+|+.+++
T Consensus 46 ~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 46 GLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444 23333333444433444444444444444443
No 303
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=64.43 E-value=1.7e+02 Score=29.67 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=6.0
Q ss_pred CCCCCCccCCcc
Q 012292 407 LGSAPTIDIDED 418 (466)
Q Consensus 407 ~~~~~~~~~~~~ 418 (466)
|..+|+..-|+|
T Consensus 326 ~~~~s~~ssddD 337 (338)
T KOG3647|consen 326 MSGMSAISSDDD 337 (338)
T ss_pred cccccccccCCC
Confidence 344555555554
No 304
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=64.31 E-value=2.2e+02 Score=30.92 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhH------HHHHHHhcc
Q 012292 156 SQELDKVTLECLKLKQRNMD------LAKELASLK 184 (466)
Q Consensus 156 ~eEVeklkeE~~rLq~rn~a------lakeL~sLK 184 (466)
.+-|..++....+.-.+..+ ++.++..|+
T Consensus 364 ~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr 398 (488)
T PF06548_consen 364 MEGIEDVKKAAAKAGVKGAESRFINSLAAEISALR 398 (488)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 34466666666666555542 355555555
No 305
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=64.18 E-value=2.9e+02 Score=32.28 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012292 252 EKINKLKTRVQELETAVELKDNEVLRAL 279 (466)
Q Consensus 252 ~ei~~Lk~~v~eLqk~le~~~ne~l~~l 279 (466)
.|...-++.|++++..|+.......++.
T Consensus 284 ~ElSqkeelVk~~qeeLd~lkqt~t~a~ 311 (1265)
T KOG0976|consen 284 DELSQKEELVKELQEELDTLKQTRTRAD 311 (1265)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445556666666665444444333
No 306
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=64.11 E-value=4.4 Score=45.73 Aligned_cols=40 Identities=33% Similarity=0.819 Sum_probs=27.2
Q ss_pred ccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcC
Q 012292 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPV 58 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~ 58 (466)
.|.||--.+.. -......|||+-|.+|...||. ..-.||.
T Consensus 1030 ~C~~C~l~V~g---ss~~Cg~C~Hv~H~sc~~eWf~-----~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRG---SSNFCGTCGHVGHTSCMMEWFR-----TGDVCPS 1069 (1081)
T ss_pred eeeeEeeEeec---cchhhccccccccHHHHHHHHh-----cCCcCCC
Confidence 45555444431 1224568999999999999999 4457774
No 307
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=64.05 E-value=36 Score=26.08 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=27.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012292 228 ELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDN 273 (466)
Q Consensus 228 eL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~n 273 (466)
+|..++..+.......++..+.....++++++.++.|-...|...+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444455555555555566666666666666666666666655443
No 308
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.95 E-value=1.2e+02 Score=34.12 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 012292 95 EVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKN---EALRQKVSVEQLLHSKSQELDKVTLECLKLK 170 (466)
Q Consensus 95 El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~---EkLk~~esLeqLL~~q~eEVeklkeE~~rLq 170 (466)
.+++++.....|...++..+.++..|.+++..+++.+..+...-+ ..-+.++.|+..|......++.+......++
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666677776666655443333222 2233344566666666666777766666554
No 309
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=63.89 E-value=2.1e+02 Score=30.54 Aligned_cols=15 Identities=7% Similarity=-0.064 Sum_probs=6.7
Q ss_pred ccccCCCCcccccCC
Q 012292 434 NIKKNPPSPVSLSKP 448 (466)
Q Consensus 434 ~~~~~~~~~~~~~~~ 448 (466)
.++--+|-+++..-|
T Consensus 468 e~~aiAaedt~~~GP 482 (499)
T COG4372 468 ERSAIAAEDTVGPGP 482 (499)
T ss_pred cccCCCCCCCcCCCc
Confidence 344444444444444
No 310
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=63.58 E-value=1.3e+02 Score=27.99 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012292 246 KLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
+++.....|..++.++..++..+
T Consensus 153 ~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 153 EVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555555443
No 311
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.43 E-value=2.5e+02 Score=31.26 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012292 109 VLESQGKEIKEINEELCLCK 128 (466)
Q Consensus 109 ~Le~~~~~lk~L~eel~~~K 128 (466)
.++..+++.+.|.+.+..+.
T Consensus 332 eIe~~~ke~kdLkEkv~~lq 351 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQ 351 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444
No 312
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=62.99 E-value=2.4 Score=44.49 Aligned_cols=58 Identities=21% Similarity=0.485 Sum_probs=0.0
Q ss_pred Cccccccccccc--cc------------ccCcceeecCCCcccHHHHHHHHHhcC-C---CCCCCCcCcCccccCC
Q 012292 9 KTICSICYEDLK--PI------------VEDLQVISICGHVFHELCLQQWFEYCS-S---SKKCTCPVCKQRCSSS 66 (466)
Q Consensus 9 eltCpICLe~f~--P~------------~~~~~~llpCGHsFC~~CL~~wle~~~-~---~~s~~CP~CR~~~~~~ 66 (466)
.-+||+|+..=. |. .---..+.||||+.-.....-|-+-.- . +-...||+|-.++...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 678999985311 10 001235689999887777777865221 1 1246899998888754
No 313
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=62.67 E-value=1.1e+02 Score=27.05 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=44.4
Q ss_pred ChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012292 88 DPEVSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERI----------KEEAALKNEALRQKVSVEQLLHSKSQ 157 (466)
Q Consensus 88 ~~e~l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQl----------keE~~~l~EkLk~~esLeqLL~~q~e 157 (466)
-.+.+...+.++++.+..+...+......-..+.+++..+.... ......+.+.-.....+-+++..+.+
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 34556777777777777777777666666666666665443221 11111111222222233345555566
Q ss_pred HHHHHHHHHHHHHH
Q 012292 158 ELDKVTLECLKLKQ 171 (466)
Q Consensus 158 EVeklkeE~~rLq~ 171 (466)
++++++.++..++.
T Consensus 97 ~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 97 EVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555543
No 314
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=62.62 E-value=7.4 Score=29.63 Aligned_cols=35 Identities=26% Similarity=0.669 Sum_probs=28.0
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHH
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQ 42 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~ 42 (466)
+....|++|-+.|.+ .++......||-.+|..|..
T Consensus 3 ~~~~~C~~Cg~~~~~-~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 3 YEGCKCPVCGKKFKD-GDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccCccChhhCCcccC-CCCEEECCCCCCcccHHHHh
Confidence 456789999999975 45666678899999999943
No 315
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=62.60 E-value=4 Score=26.37 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=12.6
Q ss_pred ccccccccccccccCcceeecCCCcc
Q 012292 11 ICSICYEDLKPIVEDLQVISICGHVF 36 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGHsF 36 (466)
.||-|...+.- .......|||.|
T Consensus 2 ~CP~C~~~V~~---~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE---SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh---hcCcCCCCCCCC
Confidence 47777777641 111233477776
No 316
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=62.39 E-value=75 Score=26.76 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 012292 215 LRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKV 281 (466)
Q Consensus 215 Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~ 281 (466)
|..+|......|+++......+..+...+..+..++..|+.+-+.++-.+++..+...+| ++.|+.
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e-~k~L~~ 66 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNE-MKKLNT 66 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHH
No 317
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=62.37 E-value=2e+02 Score=31.61 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Q 012292 142 LRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184 (466)
Q Consensus 142 Lk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLK 184 (466)
..+++.+.+.|+...+.-+++.-|...++++++ ..+..+.
T Consensus 253 ~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA---E~m~~~~ 292 (596)
T KOG4360|consen 253 RHEKEELDEHLQAYKDAQRQLTAELEELEDKYA---ECMQMLH 292 (596)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 344456666666666666777777777777766 4444444
No 318
>PRK10869 recombination and repair protein; Provisional
Probab=62.30 E-value=2.6e+02 Score=31.10 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=7.1
Q ss_pred CCCCCCCCccccCc
Q 012292 327 TSRVTNDFSFSTKS 340 (466)
Q Consensus 327 ~~~~~~~~~~~~~~ 340 (466)
.|.+.-.|.|+..+
T Consensus 407 ~G~d~veF~~~~n~ 420 (553)
T PRK10869 407 DGADRIEFRVTTNP 420 (553)
T ss_pred CCceEEEEEEecCC
Confidence 44445556665443
No 319
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.79 E-value=2.1e+02 Score=30.03 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012292 216 RKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKIN 255 (466)
Q Consensus 216 kk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~ 255 (466)
+..+......|.++..-+..+.++..+...+|++.+.+++
T Consensus 279 ~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 279 QDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555444444444444444444444433
No 320
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=61.75 E-value=1.5e+02 Score=28.38 Aligned_cols=9 Identities=22% Similarity=0.065 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 012292 93 RAEVKILEV 101 (466)
Q Consensus 93 ~~El~rLe~ 101 (466)
+.+...+..
T Consensus 21 ~~en~kL~~ 29 (193)
T PF14662_consen 21 ADENAKLQR 29 (193)
T ss_pred HHHHHHHHH
Confidence 333333333
No 321
>PLN02400 cellulose synthase
Probab=61.69 E-value=6.8 Score=46.23 Aligned_cols=53 Identities=26% Similarity=0.567 Sum_probs=35.3
Q ss_pred CCccccccccccc-ccccCcc-eeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 8 GKTICSICYEDLK-PIVEDLQ-VISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~-~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
....|.||-|.+. .+...+. ..-.|+--.|..|.+ |.-+.++..||+|+.+..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE----YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE----YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhh----eecccCCccCcccCCccc
Confidence 3449999999987 2222222 123455558999974 333357899999998876
No 322
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=61.39 E-value=8 Score=44.07 Aligned_cols=58 Identities=24% Similarity=0.499 Sum_probs=40.7
Q ss_pred CCCCCCcccccccccccccccCcceeecCCC-----cccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISICGH-----VFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpCGH-----sFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
....+..+|-||...=.| +-+-.-||.. ..|.+|+..|++. ++...|-.|..++.-++
T Consensus 7 ~mN~d~~~CRICr~e~~~---d~pLfhPCKC~GSIkYiH~eCL~eW~~~---s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 7 PMNEDKRSCRICRTEDIR---DDPLFHPCKCSGSIKYIHRECLMEWMEC---SGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CCCccchhceeecCCCCC---CCcCcccccccchhHHHHHHHHHHHHhc---CCCcceeeecceeeeee
Confidence 345667899999977642 1122345553 3599999999992 46789999998876554
No 323
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.94 E-value=27 Score=25.47 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012292 246 KLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
+++.+..|..+|+.++..|...+
T Consensus 20 ~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 20 EYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444433
No 324
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=60.88 E-value=2.8 Score=47.76 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 228 ELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 228 eL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
.+.+++..|.........+.+++..++..|++++..|+..-
T Consensus 367 ~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~ek 407 (713)
T PF05622_consen 367 EYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEK 407 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555555555555555554443
No 325
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=60.83 E-value=90 Score=26.93 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 012292 212 IDVLRKSLVIRNKNYTELMAKCNLLGREKARFS-EKLEKAKEKINKLKTRVQELETAVELKDNEVL 276 (466)
Q Consensus 212 ~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~-~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l 276 (466)
...|++.++..-..+..|.. ..+.+ ..|.++..|+..|.-+-+.|.+.++....|+-
T Consensus 14 ~~vLKKaVieEQ~k~~~L~e--------~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 14 NQVLKKAVIEEQAKNAELKE--------QLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555555555555 33333 56777777777777777777777777666654
No 326
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=60.81 E-value=2.9e+02 Score=31.25 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=5.8
Q ss_pred HHHHHHHHhhhhHH
Q 012292 226 YTELMAKCNLLGRE 239 (466)
Q Consensus 226 yeeL~~k~e~L~re 239 (466)
|..|....+.|.++
T Consensus 246 ~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 246 YQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 327
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=60.39 E-value=1.1e+02 Score=26.04 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=20.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 227 TELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELE 265 (466)
Q Consensus 227 eeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLq 265 (466)
..|..+++.+..+..+..+.++....++.+++.++.+++
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444544555555555555555555554
No 328
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=60.33 E-value=9.3 Score=32.97 Aligned_cols=60 Identities=18% Similarity=0.403 Sum_probs=35.8
Q ss_pred CCCCCccccccccccccccc---CcceeecC---CCcccHHHHHHHHHhcC----CCCCCCCcCcCcccc
Q 012292 5 NKFGKTICSICYEDLKPIVE---DLQVISIC---GHVFHELCLQQWFEYCS----SSKKCTCPVCKQRCS 64 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~---~~~~llpC---GHsFC~~CL~~wle~~~----~~~s~~CP~CR~~~~ 64 (466)
|+....+|..|...-..... .......| .=.||..||..++.... ......||.||....
T Consensus 3 d~~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 3 DSVNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred cCCCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 34556778888774431100 00011345 66799999998765211 235688999998655
No 329
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=59.94 E-value=2.2e+02 Score=29.53 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=20.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 227 TELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 227 eeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
+.+..++++|+++......+.+++..|..--+.++.-|...|
T Consensus 136 Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 136 EKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555544555555444444444444443333
No 330
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=59.81 E-value=62 Score=31.86 Aligned_cols=56 Identities=9% Similarity=0.175 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
.+..+-..+...|+.|..+++.|+.......+-+.....++.+|+.++..++....
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444444444444443333
No 331
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.41 E-value=2e+02 Score=28.98 Aligned_cols=21 Identities=5% Similarity=0.007 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 012292 250 AKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 250 ~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+..+..+++..+-.+......
T Consensus 188 L~~qk~e~~~l~~~~aa~~a~ 208 (265)
T COG3883 188 LNSQKAEKNALIAALAAKEAS 208 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444333333
No 332
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=59.38 E-value=3.3e+02 Score=31.38 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKA 250 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~ 250 (466)
.-+.++.|..++...++.|+++..-.++|..++.+++..+..+
T Consensus 214 Ale~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 214 ALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4555666666666666666666655555555555544443333
No 333
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=59.30 E-value=65 Score=34.49 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFS---EKLEKAKEKINKLKTRVQELETAVELKDNEVLRALK 280 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~---~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~ 280 (466)
-.|..+.......+++|..+.+.+.++..... .+.+.+..+..+|++++++|++.+...+.++...+.
T Consensus 31 ~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 31 LELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566777777777777776533 245667788889999999999999988888666444
No 334
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=59.25 E-value=3.9e+02 Score=32.17 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=10.5
Q ss_pred CCCCCcCcCccccC
Q 012292 52 KKCTCPVCKQRCSS 65 (466)
Q Consensus 52 ~s~~CP~CR~~~~~ 65 (466)
..-.||+|.....+
T Consensus 502 ~GePCPVCGS~~HP 515 (1047)
T PRK10246 502 AGQPCPLCGSTSHP 515 (1047)
T ss_pred CCCCcCCCCcccCc
Confidence 45789999886654
No 335
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=58.94 E-value=3.7 Score=45.38 Aligned_cols=43 Identities=35% Similarity=0.775 Sum_probs=27.3
Q ss_pred Ccccccccccc--ccc-ccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCc
Q 012292 9 KTICSICYEDL--KPI-VEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVC 59 (466)
Q Consensus 9 eltCpICLe~f--~P~-~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~C 59 (466)
...|.+|...= -|- .+.......||++||..|+.+ .+..||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r--------~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR--------KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc--------cCCCCCch
Confidence 45677873211 121 223345678999999999664 45569999
No 336
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=58.82 E-value=9.3 Score=44.99 Aligned_cols=56 Identities=18% Similarity=0.423 Sum_probs=37.7
Q ss_pred CCCCCccccccccccc-ccccCcc-eeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQ-VISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~-~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.+.....|.||-|.+. .+...+. ..-.||--.|..|.+-= -..++..||+|+.+..
T Consensus 11 ~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye----~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 11 QSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYE----RSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhh----hhcCCccCCccCCchh
Confidence 4456779999999987 2222222 22346666899998522 2347899999998876
No 337
>smart00030 CLb CLUSTERIN Beta chain.
Probab=58.66 E-value=1.2e+02 Score=29.29 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHhcc
Q 012292 235 LLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL---KDNEVLRALKVSK 283 (466)
Q Consensus 235 ~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~---~~ne~l~~l~~~~ 283 (466)
+-+.+-..+.+.|++++++.+..-+...+.|+.|++ .+|+.+-+|=..=
T Consensus 40 r~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnetm~alWeEC 91 (206)
T smart00030 40 KTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETMMALWEEC 91 (206)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555589999999999888888888988888 6889888876553
No 338
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=58.55 E-value=2.8e+02 Score=30.26 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 012292 246 KLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKK 284 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~ 284 (466)
-|.+-+++|.+ ++.|+..|+.+...+|-.|++.|.
T Consensus 454 ~LskKeeever----LQ~lkgelEkat~SALdlLkrEKe 488 (527)
T PF15066_consen 454 TLSKKEEEVER----LQQLKGELEKATTSALDLLKREKE 488 (527)
T ss_pred HhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444 344445555555566777776663
No 339
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=58.46 E-value=2.5e+02 Score=29.78 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKK 284 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~ 284 (466)
++-..+.+++++.+.+++.|+..+..+. ..|....+.|-
T Consensus 356 kerd~L~keLeekkreleql~~q~~v~~-saLdtCikaKs 394 (442)
T PF06637_consen 356 KERDSLAKELEEKKRELEQLKMQLAVKT-SALDTCIKAKS 394 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHhcc
Confidence 4444455556666666666666665543 44555555553
No 340
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=58.44 E-value=49 Score=27.45 Aligned_cols=49 Identities=31% Similarity=0.400 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccchhHH
Q 012292 242 RFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKKASQKEE 290 (466)
Q Consensus 242 ~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~~~~~~~ 290 (466)
+..+++++++.+|..+..++++|+....+.+|.-+=.+.++-+.++.++
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL 53 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEEL 53 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4456788888888888888888888888888765555555555444443
No 341
>PLN02678 seryl-tRNA synthetase
Probab=58.41 E-value=71 Score=34.59 Aligned_cols=67 Identities=24% Similarity=0.260 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFS---EKLEKAKEKINKLKTRVQELETAVELKDNEVLRALK 280 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~---~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~ 280 (466)
.|-.+........++|..+.+++.++..... .+.+.+..+...|++++..|+..+...+.++...+.
T Consensus 37 ~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 37 ALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445566667776666666665422 345566677888888888888888888888665443
No 342
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=58.39 E-value=76 Score=36.77 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKD 272 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ 272 (466)
+.+.++.=+..+.......+++..+.+...++......++++...+++++++++++..+.++.+.
T Consensus 495 p~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~ 559 (771)
T TIGR01069 495 PHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERE 559 (771)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444555555555555444444444433
No 343
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=58.23 E-value=81 Score=28.82 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 212 IDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 212 ~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
++.|...-..+.....-....++.|+++..+....|++...+|.+|++.++.++...+.....
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444445566677777888888889999999999999999998888875444
No 344
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=57.96 E-value=3e+02 Score=30.43 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEK----AKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek----~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+.|.+.+....+..+.+....+.......++..+|+. .+.+|.-|-+-+..|...|..
T Consensus 444 ~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~ 505 (518)
T PF10212_consen 444 RALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAK 505 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334444444444432 344555555555555555554
No 345
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=57.64 E-value=28 Score=31.02 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=16.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 232 KCNLLGREKARFSEKLEKAKEKINKLKTRVQELET 266 (466)
Q Consensus 232 k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk 266 (466)
+++.|.+......+.+.....+++.+...+.++..
T Consensus 102 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 102 RKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444455555555555555555444
No 346
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=57.29 E-value=5.8 Score=29.70 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=24.5
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
...||.|...|+.. .++.-|...... ......||+|...++
T Consensus 2 ~f~CP~C~~~~~~~------------~L~~H~~~~H~~---~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 2 SFTCPYCGKGFSES------------SLVEHCEDEHRS---ESKNVVCPICSSRVT 42 (54)
T ss_pred CcCCCCCCCccCHH------------HHHHHHHhHCcC---CCCCccCCCchhhhh
Confidence 56899999966521 133444444322 234688999986443
No 347
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=57.21 E-value=2.2e+02 Score=28.64 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELM 230 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~ 230 (466)
.++..++|++++..+......|.
T Consensus 103 t~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 103 THAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHhccHHH
Confidence 45666777777766666555554
No 348
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=56.71 E-value=57 Score=30.05 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012292 246 KLEKAKEKINKLKTRVQ 262 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~ 262 (466)
..+.+..+|+.|+....
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 349
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=56.55 E-value=7.3 Score=39.08 Aligned_cols=54 Identities=31% Similarity=0.640 Sum_probs=37.7
Q ss_pred CcccccccccccccccCcceeecCC-----CcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 9 KTICSICYEDLKPIVEDLQVISICG-----HVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCG-----HsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
...|-||.+...+.... ....||. +..|..|+..|+.. .++..|.+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~-~l~~pC~C~g~l~~vH~~cl~~W~~~---~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGL-LLISPCSCKGSLAYVHRSCLEKWFSI---KGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEeccccccccc-ccccCccccCcHHHHHHHHHHhhhcc---ccCeeeecccccceec
Confidence 47899999976532111 2345664 46699999999884 3678999998866544
No 350
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=56.37 E-value=4.8e+02 Score=32.39 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=11.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012292 98 ILEVKVSRLHTVLESQGKEIKEINEEL 124 (466)
Q Consensus 98 rLe~kl~~L~~~Le~~~~~lk~L~eel 124 (466)
.+...+..+...+.....++..+....
T Consensus 746 el~~~IaeL~~~i~~l~~~l~~l~~r~ 772 (1353)
T TIGR02680 746 ELDARLAAVDDELAELARELRALGARQ 772 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 351
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=56.24 E-value=9.3 Score=39.08 Aligned_cols=41 Identities=22% Similarity=0.561 Sum_probs=26.8
Q ss_pred ceeecCCCcccHHHHHHHHHhcC-C---CCCCCCcCcCccccCCC
Q 012292 27 QVISICGHVFHELCLQQWFEYCS-S---SKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 27 ~~llpCGHsFC~~CL~~wle~~~-~---~~s~~CP~CR~~~~~~~ 67 (466)
+.+.||||+.-..-..-|.+-.- . .-...||+|-..+....
T Consensus 373 haF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 373 HAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred cccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 35679999766665666655211 1 23578999988877654
No 352
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.18 E-value=1.1e+02 Score=33.78 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 210 DTIDVLRKSLVIR-NKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 210 e~~d~Lkk~l~~~-~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
++++.++..++.. .....++...+++|.+....-.++|+.+.+|++.+++.-..|.+..++
T Consensus 566 ~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~ee 627 (741)
T KOG4460|consen 566 RATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEE 627 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555543333 346778888899999888888899999999999999888888888777
No 353
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=56.15 E-value=3.6e+02 Score=30.88 Aligned_cols=20 Identities=40% Similarity=0.493 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 012292 250 AKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 250 ~~~ei~~Lk~~v~eLqk~le 269 (466)
.+.++.+|+.++++|+++-+
T Consensus 637 ~~~e~~rl~~rlqelerdkN 656 (739)
T PF07111_consen 637 RKEEGQRLTQRLQELERDKN 656 (739)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45667788888887776543
No 354
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=55.95 E-value=1.9e+02 Score=27.68 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 012292 135 AALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQR 172 (466)
Q Consensus 135 ~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~r 172 (466)
...++..+...+.-...+......+..+..+...+.-.
T Consensus 71 ~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 71 VEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 355
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=55.63 E-value=3.8e+02 Score=30.92 Aligned_cols=20 Identities=10% Similarity=0.446 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 012292 236 LGREKARFSEKLEKAKEKIN 255 (466)
Q Consensus 236 L~ree~~~~~kLek~~~ei~ 255 (466)
+.+++.+.....+.+..++.
T Consensus 235 ~~~~k~rl~~d~E~Lr~e~~ 254 (916)
T KOG0249|consen 235 MRHDKDKLRTDIEDLRGELD 254 (916)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 33333333333333333333
No 356
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.55 E-value=52 Score=30.98 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 237 GREKARFSEKLEKAKEKINKLKTRVQELETA 267 (466)
Q Consensus 237 ~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~ 267 (466)
..|....+++|++++.+++.||++.+.|+++
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455555555555555555555543
No 357
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=54.75 E-value=1.7e+02 Score=26.66 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012292 94 AEVKILEVKVSRLHTVLESQGKEIKEIN 121 (466)
Q Consensus 94 ~El~rLe~kl~~L~~~Le~~~~~lk~L~ 121 (466)
.++.+.+..-+.+...+......+....
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q 37 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQ 37 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 358
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=54.49 E-value=95 Score=33.18 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFS---EK-LEKAKEKINKLKTRVQELETAVELKDNEVLRALK 280 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~---~k-Lek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~ 280 (466)
.|-+.........++|+.+-|.+.++..... .+ .+.+..+..+|++++.+|++.+...+.++...+.
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445566667776666666665533 22 5667778888899999999888887777655443
No 360
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=54.38 E-value=6.6 Score=34.33 Aligned_cols=52 Identities=21% Similarity=0.434 Sum_probs=33.7
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
.+.+-+|.+|...|............|+|.+|..|-.. .++.....|.+|..
T Consensus 51 ~~~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~----~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 51 KYGERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY----SKKEPIWLCKVCQK 102 (118)
T ss_dssp THCCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE----TSSSCCEEEHHHHH
T ss_pred ccCCcchhhhCCcccccCCCCCcCCcCCccccCccCCc----CCCCCCEEChhhHH
Confidence 34678999999988733333445678999999999543 12234567888864
No 362
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=54.25 E-value=3.5e+02 Score=30.17 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Q 012292 90 EVSRAEVKILEVKVSRLHTVLESQ 113 (466)
Q Consensus 90 e~l~~El~rLe~kl~~L~~~Le~~ 113 (466)
..|+++++++-.++..-.+..+..
T Consensus 4 RKLq~eIdr~lkKv~Egve~Fd~i 27 (575)
T KOG2150|consen 4 RKLQQEIDRCLKKVDEGVEIFDEI 27 (575)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHH
Confidence 457888888777666655554443
No 363
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=54.15 E-value=1.1e+02 Score=29.80 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
.+|.|+..|..-+-+++.+.. .++.++.+.+.++..|+..+...-++-+++
T Consensus 2 s~EELRq~Ll~TTlELE~~k~----------~A~EElRk~eeqi~~L~~Ll~~a~~ERDEA 52 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELEATKM----------EANEELRKREEQIAHLKDLLKKAYQERDEA 52 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777666655555443 333445555555555555555444444443
No 364
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=54.08 E-value=2e+02 Score=31.13 Aligned_cols=34 Identities=24% Similarity=0.606 Sum_probs=22.6
Q ss_pred Cccccccccccc---ccccCcceeecCCCcccHHHHHHH
Q 012292 9 KTICSICYEDLK---PIVEDLQVISICGHVFHELCLQQW 44 (466)
Q Consensus 9 eltCpICLe~f~---P~~~~~~~llpCGHsFC~~CL~~w 44 (466)
...|.||.. |+ .+..++.+ -.|||+-|..|-.+.
T Consensus 128 ~C~C~iC~k-fD~~~n~~~Wi~C-d~CgH~cH~dCALr~ 164 (446)
T PF07227_consen 128 RCMCCICSK-FDDNKNTCSWIGC-DVCGHWCHLDCALRH 164 (446)
T ss_pred cCCccccCC-cccCCCCeeEEec-cCCCceehhhhhccc
Confidence 457888866 55 22234443 369999999997664
No 365
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.87 E-value=11 Score=42.85 Aligned_cols=48 Identities=29% Similarity=0.720 Sum_probs=34.5
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcC--cCccccC
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPV--CKQRCSS 65 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~--CR~~~~~ 65 (466)
.-|.+|-..+..+ . ...--|||.-|..|+..|+. +...||. |...+..
T Consensus 780 ~~CtVC~~vi~G~--~-~~c~~C~H~gH~sh~~sw~~-----~~s~ca~~~C~~~c~~ 829 (839)
T KOG0269|consen 780 AKCTVCDLVIRGV--D-VWCQVCGHGGHDSHLKSWFF-----KASPCAKSICPHLCHY 829 (839)
T ss_pred cCceeecceeeee--E-eecccccccccHHHHHHHHh-----cCCCCccccCCccccc
Confidence 4688998887632 1 12346999999999999999 5677776 6555543
No 366
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.86 E-value=8.1 Score=34.81 Aligned_cols=48 Identities=21% Similarity=0.563 Sum_probs=27.2
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCC-------CCCCCCcCcCcc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSS-------SKKCTCPVCKQR 62 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~-------~~s~~CP~CR~~ 62 (466)
..++.+|.||.-.-. .--|||. |..|-.+.-..+.+ .-...|-.|+..
T Consensus 62 v~ddatC~IC~KTKF--------ADG~GH~-C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKF--------ADGCGHN-CSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhccc--------ccccCcc-cchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 356889999997643 2358883 55564444332221 122457777654
No 367
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=53.64 E-value=2.7e+02 Score=28.70 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 91 VSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERI 131 (466)
Q Consensus 91 ~l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQl 131 (466)
.|..+...++..+..+.........+++.++.....+..++
T Consensus 31 sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~a 71 (310)
T PF09755_consen 31 SLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKA 71 (310)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444444455555555554444333
No 368
>PLN02195 cellulose synthase A
Probab=53.24 E-value=14 Score=43.27 Aligned_cols=55 Identities=18% Similarity=0.375 Sum_probs=37.2
Q ss_pred CCccccccccccc-ccccCcc-eeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 8 GKTICSICYEDLK-PIVEDLQ-VISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~-~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
....|.||-+.+. .....+. ..-.||--.|..|.+- .-+.++..||+|+.+....
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyey----er~eg~q~CpqCkt~Yk~~ 61 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEY----EIKEGRKVCLRCGGPYDAE 61 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhh----hhhcCCccCCccCCccccc
Confidence 3458999999887 2222222 2345777789999842 2234789999999988733
No 369
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=52.98 E-value=2.7e+02 Score=28.53 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhhHHHH
Q 012292 162 VTLECLKLKQRNMDLAK 178 (466)
Q Consensus 162 lkeE~~rLq~rn~alak 178 (466)
+.+....++.+|+=+..
T Consensus 219 ~eERL~QlqsEN~LLrQ 235 (305)
T PF14915_consen 219 LEERLSQLQSENMLLRQ 235 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555554333
No 370
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=52.95 E-value=1.9e+02 Score=26.64 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELET 266 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk 266 (466)
+.+-.++-...|....|+++|+.|.++..- +.++-.+|+.||+.+..|+.
T Consensus 98 ~~~cdsvD~sik~~y~liakceELn~~M~~----v~~La~qIK~Ik~~lD~lE~ 147 (149)
T PF10157_consen 98 DKLCDSVDASIKSMYTLIAKCEELNESMKP----VYKLAQQIKDIKKLLDLLES 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 333333334444555688888888877655 66677777777777777664
No 371
>PHA02047 phage lambda Rz1-like protein
Probab=52.80 E-value=75 Score=27.09 Aligned_cols=48 Identities=27% Similarity=0.350 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 012292 237 GREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKK 284 (466)
Q Consensus 237 ~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~ 284 (466)
.++-..+.+.|+.++..|..+.+.|..|+..-+.+++|+...|...+.
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~ 80 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRP 80 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555558899999999999999999999999999999999987664
No 372
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=52.65 E-value=2.3e+02 Score=27.52 Aligned_cols=16 Identities=50% Similarity=0.823 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 012292 245 EKLEKAKEKINKLKTR 260 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~ 260 (466)
.+|+.|-.+|..++..
T Consensus 143 ekL~~ANeei~~v~~~ 158 (207)
T PF05010_consen 143 EKLEKANEEIAQVRSK 158 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666666555444
No 373
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=52.55 E-value=1.2e+02 Score=24.11 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 012292 218 SLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKV 281 (466)
Q Consensus 218 ~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~ 281 (466)
.+..+....++|-..|++|.++-..+...+.....|...|.++.......++ ..++||+.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE----amI~RLk~ 60 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE----AMITRLKA 60 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhh
No 374
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.46 E-value=1.1e+02 Score=28.07 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012292 253 KINKLKTRVQELETAVE 269 (466)
Q Consensus 253 ei~~Lk~~v~eLqk~le 269 (466)
++.++......+.+...
T Consensus 146 e~~~~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 146 EKEKLEKEYKKWRKEWK 162 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455554444444433
No 375
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.18 E-value=1.8e+02 Score=28.65 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccchh
Q 012292 221 IRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKKASQK 288 (466)
Q Consensus 221 ~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~~~~~ 288 (466)
..++..+.|....+++.+......+++..+..+|..++..-++|.-.+...-..+-.-+...--|...
T Consensus 60 ~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~ 127 (251)
T PF11932_consen 60 QLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLE 127 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChH
Confidence 33444444554555555555555555555555555555555555554444444433333333344433
No 376
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=52.13 E-value=99 Score=33.36 Aligned_cols=46 Identities=26% Similarity=0.245 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHhc
Q 012292 237 GREKARFSEKLEKAKEKINKLKTRVQELETAVEL---KDNEVLRALKVS 282 (466)
Q Consensus 237 ~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~---~~ne~l~~l~~~ 282 (466)
+.+-..+.+.|++++++.+..-+..++.++.|++ .+|+.|.+|=.+
T Consensus 36 eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn~sm~~lWeE 84 (436)
T PF01093_consen 36 EEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCNESMMALWEE 84 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444488999999988888888888888888 688988887544
No 377
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.06 E-value=97 Score=33.67 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=33.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012292 206 ANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEK 253 (466)
Q Consensus 206 ~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~e 253 (466)
.+..|++.+|.-.+...++.+..|...=+.|.+|..++++.....+..
T Consensus 55 DTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~ 102 (472)
T TIGR03752 55 DTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQ 102 (472)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 468889988888888888877777766666666666665544433333
No 378
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=52.05 E-value=1.2e+02 Score=24.30 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 012292 245 EKLEKAKEKINK 256 (466)
Q Consensus 245 ~kLek~~~ei~~ 256 (466)
.+++++..++..
T Consensus 54 ~~~~~~e~~~~~ 65 (74)
T PF12329_consen 54 KKLEELEKELES 65 (74)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 379
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.68 E-value=1.1e+02 Score=35.62 Aligned_cols=8 Identities=13% Similarity=0.226 Sum_probs=3.8
Q ss_pred CCCcCcCc
Q 012292 54 CTCPVCKQ 61 (466)
Q Consensus 54 ~~CP~CR~ 61 (466)
..||++-.
T Consensus 356 ~G~~vpa~ 363 (782)
T PRK00409 356 SGLPIPAN 363 (782)
T ss_pred hCCCcccC
Confidence 34555543
No 380
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=51.42 E-value=2.4e+02 Score=28.06 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=29.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHH---HHHHHhcc
Q 012292 147 SVEQLLHSKSQELDKVTLECLKLKQRNMDL---AKELASLK 184 (466)
Q Consensus 147 sLeqLL~~q~eEVeklkeE~~rLq~rn~al---akeL~sLK 184 (466)
+|++.+..+.+++..++.|+..|+..|..| .+|+.+..
T Consensus 97 ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 97 ELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 677788888888888888888888888866 55555554
No 381
>PLN02320 seryl-tRNA synthetase
Probab=50.90 E-value=1e+02 Score=33.98 Aligned_cols=60 Identities=17% Similarity=0.090 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012292 221 IRNKNYTELMAKCNLLGREKARFS--EKLEKAKEKINKLKTRVQELETAVELKDNEVLRALK 280 (466)
Q Consensus 221 ~~~k~yeeL~~k~e~L~ree~~~~--~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~ 280 (466)
.....+++|..+.+.+.++..... .+.+++..+...|++++..|+..+...+.++...+.
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556665555555554322 345677778888999999999998888887665443
No 382
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=50.83 E-value=9 Score=37.09 Aligned_cols=46 Identities=20% Similarity=0.521 Sum_probs=34.6
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
-.|.+|-...-.. ...-.||--+|..|+..+++ ....||.|..-++
T Consensus 182 k~Cn~Ch~LvIqg----~rCg~c~i~~h~~c~qty~q-----~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG----IRCGSCNIQYHRGCIQTYLQ-----RRDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhhee----eccCcccchhhhHHHHHHhc-----ccCcCCchhcccC
Confidence 4799999988621 12446777899999999998 5788999965554
No 383
>PF15456 Uds1: Up-regulated During Septation
Probab=50.70 E-value=1.8e+02 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 247 LEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 247 Lek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
..+++++...+..++++|...|...++-
T Consensus 76 ~~~~eeel~~~~rk~ee~~~eL~~le~R 103 (124)
T PF15456_consen 76 SLKAEEELAESDRKCEELAQELWKLENR 103 (124)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556667777777777777777765544
No 384
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=50.50 E-value=2.8e+02 Score=29.92 Aligned_cols=72 Identities=25% Similarity=0.289 Sum_probs=40.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh---------hhHHHHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQ-ELETAVEL---------KDNEVLR 277 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~-eLqk~le~---------~~ne~l~ 277 (466)
-++.++.|++..+.+.- .=...+++.+.++..++.+.|.++..+|..++-..+ -|+++|+. ...+++.
T Consensus 225 LQD~VE~LRkDV~~Rgv--Rp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~ 302 (424)
T PF03915_consen 225 LQDLVEDLRKDVVQRGV--RPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLS 302 (424)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666665544432 122344555666677777777777777777766655 45555554 3344555
Q ss_pred HHHh
Q 012292 278 ALKV 281 (466)
Q Consensus 278 ~l~~ 281 (466)
+|+.
T Consensus 303 DL~e 306 (424)
T PF03915_consen 303 DLKE 306 (424)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 385
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=50.01 E-value=3.1 Score=42.27 Aligned_cols=56 Identities=20% Similarity=0.398 Sum_probs=37.0
Q ss_pred CCcccccccc-cccccccCcceeecCCCcccHHHHHHHH--HhcCCCCCCCCcCcCcccc
Q 012292 8 GKTICSICYE-DLKPIVEDLQVISICGHVFHELCLQQWF--EYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 8 ~eltCpICLe-~f~P~~~~~~~llpCGHsFC~~CL~~wl--e~~~~~~s~~CP~CR~~~~ 64 (466)
+...|.+|.. .|... ...+..-.||++||..|-..-+ .+...+....|+.|=..+.
T Consensus 167 ea~~C~~C~~~~Ftl~-~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~ 225 (288)
T KOG1729|consen 167 EATECMVCGCTEFTLS-ERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELE 225 (288)
T ss_pred cceecccCCCccccHH-HHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHh
Confidence 4568999999 77642 3444467899999999976522 2222333457999966554
No 386
>PRK11281 hypothetical protein; Provisional
Probab=49.50 E-value=5.7e+02 Score=31.17 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
...+-...++..++..++.||..++.+
T Consensus 227 ~q~d~~~~~~~~~~~~~~~lq~~in~k 253 (1113)
T PRK11281 227 KQRDYLTARIQRLEHQLQLLQEAINSK 253 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446666777777777777777773
No 387
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=49.32 E-value=3e+02 Score=27.99 Aligned_cols=6 Identities=17% Similarity=0.202 Sum_probs=2.4
Q ss_pred hhhHHH
Q 012292 270 LKDNEV 275 (466)
Q Consensus 270 ~~~ne~ 275 (466)
-+.+..
T Consensus 170 lAq~g~ 175 (305)
T PF15290_consen 170 LAQSGS 175 (305)
T ss_pred HHHhcc
Confidence 344443
No 388
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=49.25 E-value=1.3e+02 Score=28.37 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 012292 220 VIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVL 276 (466)
Q Consensus 220 ~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l 276 (466)
........+|...+..|.++..+ |+.+......|+.+...|+..|+.-.+..|
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~----le~~~~~~k~LrnKa~~L~~eL~~F~~~yL 168 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQR----LEEIQSKSKTLRNKANWLESELERFQEQYL 168 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555566655555555544 777778888899999999999998776654
No 389
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=48.76 E-value=4.9 Score=31.33 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=19.7
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHH
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQW 44 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~w 44 (466)
.+...|.+|...|.- ......--.||++||..|....
T Consensus 7 ~~~~~C~~C~~~F~~-~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 7 SEASNCMICGKKFSL-FRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GG-SB-TTT--B-BS-SS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCcCcCcCCcCCC-ceeeEccCCCCCEECCchhCCE
Confidence 345689999999973 2355556789999999997654
No 390
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=48.59 E-value=11 Score=29.86 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=9.4
Q ss_pred cccHHHHHHHHHh
Q 012292 35 VFHELCLQQWFEY 47 (466)
Q Consensus 35 sFC~~CL~~wle~ 47 (466)
-||..||..|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999873
No 391
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=47.97 E-value=1.5e+02 Score=31.92 Aligned_cols=47 Identities=26% Similarity=0.515 Sum_probs=37.7
Q ss_pred cccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 11 ICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 11 tCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.|.|--+.-. |+ ....-||+|=.+-|++++. ....||+=..+++...
T Consensus 2 ~CaISgEvP~~PV-----vS~~Sg~vfEkrLIEqyI~-----e~G~DPIt~~pLs~ee 49 (506)
T KOG0289|consen 2 VCAISGEVPEEPV-----VSPVSGHVFEKRLIEQYIA-----ETGKDPITNEPLSIEE 49 (506)
T ss_pred eecccCCCCCCcc-----ccccccchHHHHHHHHHHH-----HcCCCCCCCCcCCHHH
Confidence 5888777765 54 4566899999999999988 5788999988888665
No 392
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.95 E-value=75 Score=34.58 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
..++|.++++.|+.+...+.+.++..+.+|++|+.+++.|+..+
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544444344455555555666666666665555
No 393
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.88 E-value=74 Score=34.80 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
..+..++.+++++++++..|+..|..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555544
No 394
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=47.70 E-value=3.5e+02 Score=28.93 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012292 159 LDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGR 238 (466)
Q Consensus 159 VeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~r 238 (466)
+..+.++...++.....+...++.|| +.+.+.+......+.+-.-+++.|+.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk----------------------------~~~~~e~~~~~~~LqEEr~R~erLEe 265 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLK----------------------------EQYQREYQFILEALQEERYRYERLEE 265 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012292 239 EKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRAL 279 (466)
Q Consensus 239 ee~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l 279 (466)
.... -.+--.-||..||..+..++..++=...|..|++
T Consensus 266 qlNd---~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi 303 (395)
T PF10267_consen 266 QLND---LTELHQNEIYNLKQELASMEEKMAYQSYERARDI 303 (395)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
No 395
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.53 E-value=4e+02 Score=28.82 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=5.5
Q ss_pred cccHHHHHHH
Q 012292 35 VFHELCLQQW 44 (466)
Q Consensus 35 sFC~~CL~~w 44 (466)
.||+.|+...
T Consensus 160 ny~~qsl~k~ 169 (502)
T KOG0982|consen 160 NYKYQSLEKD 169 (502)
T ss_pred HHHHHHHHhh
Confidence 3566665554
No 396
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=47.31 E-value=4.3e+02 Score=29.14 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=41.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 207 NNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 207 ~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
.+...+|.|...|....+..+.+..+...+......++..++++.-++..|.++.++||+.+|.
T Consensus 429 ~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 429 SSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777766665555555556555566666666666666777777777777777776654
No 397
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=47.16 E-value=63 Score=24.77 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=21.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 233 CNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 233 ~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
++.|+.+.-+....+...+.+++.|++.++.++..+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555655566666666666666666665554
No 398
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=46.76 E-value=3.4e+02 Score=27.86 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 246 KLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
+|.+...+.++|-.+|+.|+..|+..
T Consensus 220 RLkKl~~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666677777666653
No 399
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=46.64 E-value=12 Score=27.88 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=25.8
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHH
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFE 46 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle 46 (466)
..|++|-..|... ........||++||..|......
T Consensus 3 ~~C~~C~~~F~~~-~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLT-RRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCC-ccccccCcCcCCcChHHcCCeee
Confidence 4689998888631 23344568999999999876543
No 400
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.51 E-value=59 Score=25.51 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 237 GREKARFSEKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 237 ~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
..+.....+++++.+.++..|+.+++.|++.-+-.
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 33444444555566666666666666664433333
No 401
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=45.92 E-value=5.3 Score=30.17 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=23.3
Q ss_pred Ccccc--ccccccccc--ccCcceee-cCCCcccHHHHHHH
Q 012292 9 KTICS--ICYEDLKPI--VEDLQVIS-ICGHVFHELCLQQW 44 (466)
Q Consensus 9 eltCp--ICLe~f~P~--~~~~~~ll-pCGHsFC~~CL~~w 44 (466)
..-|| =|...+... .......- .|||.||..|...|
T Consensus 18 ~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred ccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 34577 776665521 12333344 69999999998887
No 402
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=45.83 E-value=2.7 Score=31.73 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=19.0
Q ss_pred ccccc--ccccccccccCcc--eeec-CCCcccHHHHHHH
Q 012292 10 TICSI--CYEDLKPIVEDLQ--VISI-CGHVFHELCLQQW 44 (466)
Q Consensus 10 ltCpI--CLe~f~P~~~~~~--~llp-CGHsFC~~CL~~w 44 (466)
..||- |-..+........ +.-+ |||.||..|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 47877 8888872222222 3344 9999999998776
No 403
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=45.48 E-value=4.2e+02 Score=28.54 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 012292 209 KDTIDVLRKSLVIRNKNYTELM 230 (466)
Q Consensus 209 ~e~~d~Lkk~l~~~~k~yeeL~ 230 (466)
+..++.|+.+|..-.+.|.+-+
T Consensus 259 ~~EveRlrt~l~~Aqk~~~ek~ 280 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKSYQEKL 280 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888776555
No 404
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=45.19 E-value=2.9e+02 Score=27.03 Aligned_cols=8 Identities=25% Similarity=0.140 Sum_probs=2.8
Q ss_pred HHHHHHhh
Q 012292 263 ELETAVEL 270 (466)
Q Consensus 263 eLqk~le~ 270 (466)
.|++..++
T Consensus 183 al~Kq~e~ 190 (216)
T KOG1962|consen 183 ALKKQSEG 190 (216)
T ss_pred HHHHHHHH
Confidence 33333333
No 405
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=45.12 E-value=91 Score=24.58 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=40.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
....++.|.+.+....+..+++..+...+..+-.. ..+..+..++.....+++.|...|+.
T Consensus 7 ~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~--~~~~~~~~~l~es~~ki~~Lr~~L~k 67 (72)
T cd00089 7 LQSRLERLEKELSIELKVKEGAENLLRLYSDEKKK--KLLAEAEQMLRESKQKLELLKMQLEK 67 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888889999888887766432 34455555555555555555555443
No 406
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.10 E-value=8.6 Score=43.72 Aligned_cols=37 Identities=35% Similarity=0.610 Sum_probs=27.6
Q ss_pred ccccccccccccccc--CcceeecCCCcccHHHHHHHHH
Q 012292 10 TICSICYEDLKPIVE--DLQVISICGHVFHELCLQQWFE 46 (466)
Q Consensus 10 ltCpICLe~f~P~~~--~~~~llpCGHsFC~~CL~~wle 46 (466)
-.|.-|++...+... +......|||.||..|+.....
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~ 823 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESL 823 (846)
T ss_pred hhhhhhcccccccCcccceeeEEEccchhhhcccccHHH
Confidence 379999998874321 3455689999999999986544
No 407
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.66 E-value=6.8 Score=39.82 Aligned_cols=48 Identities=35% Similarity=0.740 Sum_probs=37.2
Q ss_pred CCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 8 GKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
..-+|-||...+. |. ..-.|+|-||+.|...|.. ....||.|+....+
T Consensus 104 ~~~~~~~~~g~l~vpt-----~~qg~w~qf~~~~p~~~~~-----~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPT-----RIQGCWHQFCYVCPKSNFA-----MGNDCPDCRGKISP 152 (324)
T ss_pred CccceeeeeeeEEecc-----cccCceeeeeecCCchhhh-----hhhccchhhcCcCc
Confidence 3457999999998 64 2334999999999999988 56789999876553
No 408
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.58 E-value=11 Score=42.13 Aligned_cols=43 Identities=16% Similarity=0.379 Sum_probs=31.4
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
-+|-+|..+=++. .++..++.|+-.||..| |+. -...||+|--
T Consensus 655 r~C~vcq~pedse-~~v~rt~~C~~~~C~~c---~~~-----~~~~~~vC~~ 697 (717)
T KOG3726|consen 655 RTCKVCQLPEDSE-TDVCRTTFCYTPYCVAC---SLD-----YASISEVCGP 697 (717)
T ss_pred HHHHHhcCCcCcc-ccccCccccCCcchHhh---hhh-----hhccCcccCc
Confidence 4788998887753 34556678999999998 655 3567999954
No 409
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=44.33 E-value=95 Score=33.41 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 206 ANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 206 ~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
...+...|.|+-+++.+..-.+.|+. +-+||..+++++|++-+.-...|+.++..|++++-
T Consensus 565 ~~~k~s~delr~qi~el~~ive~lk~---~~~kel~kl~~dleeek~mr~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 565 DVKKNSLDELRAQIIELLCIVEALKK---DHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAVL 625 (627)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHhh
Confidence 34667788888877777666555543 45677777778888877777788888888887764
No 410
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=43.71 E-value=7.7 Score=45.26 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKIN 255 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~ 255 (466)
.|.+.+......++++..++..|.+-..++..+++.+..++.
T Consensus 325 kL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe 366 (859)
T PF01576_consen 325 KLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELE 366 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555544444444443333333
No 411
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.58 E-value=97 Score=22.60 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 012292 245 EKLEKAKEKINKLKTR 260 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~ 260 (466)
++.+++..++..|+.+
T Consensus 26 ~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 26 KENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333344444444433
No 412
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=43.51 E-value=2.5e+02 Score=25.26 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=6.0
Q ss_pred HHHHHHhhHHHHHHH
Q 012292 148 VEQLLHSKSQELDKV 162 (466)
Q Consensus 148 LeqLL~~q~eEVekl 162 (466)
+...+....+++.++
T Consensus 106 ~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 106 LEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444443
No 413
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=43.31 E-value=2.2e+02 Score=27.42 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhHH
Q 012292 92 SRAEVKILEVKVSRLH 107 (466)
Q Consensus 92 l~~El~rLe~kl~~L~ 107 (466)
|+.|+..|+.++..+.
T Consensus 101 LkrELa~Le~~l~~~~ 116 (195)
T PF12761_consen 101 LKRELAELEEKLSKVE 116 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 414
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=43.23 E-value=2.9e+02 Score=29.74 Aligned_cols=20 Identities=10% Similarity=-0.049 Sum_probs=9.5
Q ss_pred ccccCccccccccccccccc
Q 012292 360 AKSHGKERNALQREDTSRFS 379 (466)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~ 379 (466)
.+.-.-..|++.---+.|||
T Consensus 349 ~el~l~~sgg~~~f~~tkfD 368 (447)
T KOG2751|consen 349 YELPLFQSGGLKFFWSTKFD 368 (447)
T ss_pred ccchhhcCCCceeeeccccC
Confidence 33334444444444555665
No 415
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.08 E-value=8 Score=40.75 Aligned_cols=53 Identities=26% Similarity=0.524 Sum_probs=0.0
Q ss_pred Cccccccccccc-cccc--------CcceeecCCCcccHHHHHHHHHhcCC-CCCCCCcCcCcccc
Q 012292 9 KTICSICYEDLK-PIVE--------DLQVISICGHVFHELCLQQWFEYCSS-SKKCTCPVCKQRCS 64 (466)
Q Consensus 9 eltCpICLe~f~-P~~~--------~~~~llpCGHsFC~~CL~~wle~~~~-~~s~~CP~CR~~~~ 64 (466)
-..|||=|..+. |... ....-+.|||++-+. .|-..... .....||.||..-+
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCC
Confidence 467888877776 3211 123457899999754 46442221 13689999997644
No 416
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=42.89 E-value=2.1e+02 Score=24.82 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETA 267 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~ 267 (466)
..+.|...++.|..+...+..+.++++..+.++++++..|+++
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455444444455555555555555555554443
No 417
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=42.79 E-value=1e+02 Score=26.47 Aligned_cols=38 Identities=32% Similarity=0.390 Sum_probs=31.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Q 012292 147 SVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184 (466)
Q Consensus 147 sLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLK 184 (466)
+|+.-|.-+.+.|+.+++|..+|+.+|.-+-.|++.|-
T Consensus 67 ELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 67 ELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 46677777888899999999999999888888877776
No 418
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.64 E-value=2.3e+02 Score=27.76 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=19.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Q 012292 148 VEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184 (466)
Q Consensus 148 LeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLK 184 (466)
+...+..++++++....+..+++.+..++.+..+.+.
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444445555555555555555555555555555
No 419
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=42.58 E-value=1.5e+02 Score=30.75 Aligned_cols=62 Identities=13% Similarity=0.257 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Q 012292 221 IRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVS 282 (466)
Q Consensus 221 ~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~ 282 (466)
.+.+.-.....|.+++.+-...-.+.+.+.++.+..|++.++.+++.+...+.+.+..|...
T Consensus 15 ~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~ 76 (330)
T PF07851_consen 15 ELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEED 76 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 33333333444444454444444455666666666666666666555555555555555543
No 420
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=42.51 E-value=4.1e+02 Score=27.61 Aligned_cols=170 Identities=20% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhh
Q 012292 96 VKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKL-KQRNM 174 (466)
Q Consensus 96 l~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rL-q~rn~ 174 (466)
+..+..-+..+..++.........+++.-..+.+++.+........++.++...+......+-...-..++..+ ....+
T Consensus 111 ~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a~~ee 190 (391)
T KOG1850|consen 111 VEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTAKLEE 190 (391)
T ss_pred HHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012292 175 DLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKI 254 (466)
Q Consensus 175 alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei 254 (466)
....+-..+- +.....+.+. ..-...--+|+.++..-...|+++..-.-+-+.-...++.++++..+.|
T Consensus 191 ~~~~e~~~gl-------EKd~lak~~~----e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~ 259 (391)
T KOG1850|consen 191 ASIQEKKSGL-------EKDELAKIML----EEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKI 259 (391)
T ss_pred HHHHHHHhhh-------hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhHHHH
Q 012292 255 NKLKTRVQELETAVELKDNEVL 276 (466)
Q Consensus 255 ~~Lk~~v~eLqk~le~~~ne~l 276 (466)
.+|++..-.|.+.-++.-.-+|
T Consensus 260 kklEKE~l~wr~K~e~aNk~vL 281 (391)
T KOG1850|consen 260 KKLEKETLIWRTKWENANKAVL 281 (391)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH
No 421
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=42.13 E-value=3.1e+02 Score=26.11 Aligned_cols=50 Identities=30% Similarity=0.390 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
...+|..++..|++....+..+.+..+.+|.+++..+..++..++..+-+
T Consensus 132 ~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 132 EIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777778888888888888888888888775544
No 422
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=41.71 E-value=5.9e+02 Score=29.20 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=31.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 101 VKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSK 155 (466)
Q Consensus 101 ~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q 155 (466)
+++..-...++.+++.|+.|+=+-..+.-++.++.....+.++.....+++.+.+
T Consensus 106 rkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nnaTR~lCNlL 160 (786)
T PF05483_consen 106 RKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNATRHLCNLL 160 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhHHHHHHHHH
Confidence 3666667778888888887765555455444454444444444444444544444
No 423
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=41.62 E-value=2.3e+02 Score=24.32 Aligned_cols=61 Identities=16% Similarity=0.305 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLL--GREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L--~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
..+.++.|...+.....-+..+..++++| ..+.....-.+.+...++..+..+++.+...+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34555555555555444555555555555 44455544555555555555555555444333
No 424
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.34 E-value=1.5e+02 Score=27.91 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVELKDN 273 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~~~n 273 (466)
.++++.+.|+++.+..++.|++..++...
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555544433
No 425
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=41.34 E-value=12 Score=41.77 Aligned_cols=57 Identities=25% Similarity=0.512 Sum_probs=37.8
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccc
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~ 63 (466)
...+.|+||--.=..........-.||-.+|..|+..|+...--.+...||-||...
T Consensus 16 ~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 16 IVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 344667777655441122344456799999999999998865334558899998643
No 426
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=41.20 E-value=1.5e+02 Score=28.15 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012292 246 KLEKAKEKINKLKTRVQELETAVELKD 272 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~eLqk~le~~~ 272 (466)
-++++.....+++.++.+|++.+....
T Consensus 147 ~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 147 LIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555666666666666665543
No 427
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=40.99 E-value=3.6 Score=30.03 Aligned_cols=49 Identities=20% Similarity=0.462 Sum_probs=30.3
Q ss_pred ccccccccccccccCcceeecCCCcccHHHHHHHHHhcC-CCCCCCCcCcCc
Q 012292 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCS-SSKKCTCPVCKQ 61 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~-~~~s~~CP~CR~ 61 (466)
.|+||...-. .+....--.|+..||..|+..-..... ......||.|+.
T Consensus 1 ~C~vC~~~~~--~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDD--DGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCT--TSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCC--CCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4889988332 233444457889999999875332111 123688998863
No 428
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=40.84 E-value=5.8 Score=40.04 Aligned_cols=52 Identities=15% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccc
Q 012292 6 KFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 6 ~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~ 63 (466)
.+....||||-..-. -....... ----|.+|..|-..|-- ....||.|-..-
T Consensus 169 ~w~~g~CPvCGs~P~~s~l~~~~~-~G~R~L~Cs~C~t~W~~-----~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLSVLRGGER-EGKRYLHCSLCGTEWRF-----VRIKCPYCGNTD 221 (290)
T ss_dssp -TT-SS-TTT---EEEEEEE-------EEEEEETTT--EEE-------TTS-TTT---S
T ss_pred CccCCcCCCCCCcCceEEEecCCC-CccEEEEcCCCCCeeee-----cCCCCcCCCCCC
Confidence 455689999988754 11000000 00125678889888854 467899997653
No 429
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=40.60 E-value=4e+02 Score=26.91 Aligned_cols=18 Identities=44% Similarity=0.405 Sum_probs=8.1
Q ss_pred HHhccccccCChhHHHHH
Q 012292 180 LASLKLVSDLNLDEDEVL 197 (466)
Q Consensus 180 L~sLKlvsd~~~eEeE~L 197 (466)
|.+|..|..-..+|+|.+
T Consensus 213 L~sLq~vRPAfmdEyEkl 230 (267)
T PF10234_consen 213 LQSLQSVRPAFMDEYEKL 230 (267)
T ss_pred HHHHHhcChHHHHHHHHH
Confidence 334444444444555555
No 430
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=40.57 E-value=7.2 Score=40.31 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=13.4
Q ss_pred CCCCCCccccccccccc
Q 012292 4 ENKFGKTICSICYEDLK 20 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~ 20 (466)
-+.+.+..||||-|...
T Consensus 10 ydedl~ElCPVCGDkVS 26 (475)
T KOG4218|consen 10 YDEDLGELCPVCGDKVS 26 (475)
T ss_pred CccccccccccccCccc
Confidence 35566778999999985
No 431
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=40.46 E-value=8e+02 Score=30.32 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 012292 246 KLEKAKEKINKLKTRVQELETAVELKDNEVLRALKV 281 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~ 281 (466)
.+.+.--+...|+.+++++...+...+..++-+...
T Consensus 1002 r~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~ 1037 (1294)
T KOG0962|consen 1002 RNLKDNLTLRNLERKLKELERELSELDKQILEADIK 1037 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334444556667777777777777777777666533
No 432
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=40.17 E-value=4.4e+02 Score=27.22 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=15.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012292 206 ANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKAR 242 (466)
Q Consensus 206 ~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~ 242 (466)
..+....+.....+......+..+...+..+..+...
T Consensus 192 ~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 228 (423)
T TIGR01843 192 LVSRLELLELERERAEAQGELGRLEAELEVLKRQIDE 228 (423)
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333333
No 433
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.96 E-value=4.6e+02 Score=27.43 Aligned_cols=6 Identities=33% Similarity=0.706 Sum_probs=2.3
Q ss_pred Cccccc
Q 012292 339 KSENFN 344 (466)
Q Consensus 339 ~~~~~~ 344 (466)
..||.-
T Consensus 293 reEnlg 298 (401)
T PF06785_consen 293 REENLG 298 (401)
T ss_pred cccccc
Confidence 334433
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=39.95 E-value=6.6e+02 Score=29.24 Aligned_cols=8 Identities=50% Similarity=0.783 Sum_probs=3.4
Q ss_pred cCcccccc
Q 012292 363 HGKERNAL 370 (466)
Q Consensus 363 ~~~~~~~~ 370 (466)
||+|.|.|
T Consensus 740 HGkGtG~L 747 (782)
T PRK00409 740 HGKGTGKL 747 (782)
T ss_pred cCCChhHH
Confidence 44444443
No 435
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=39.75 E-value=5.8e+02 Score=30.28 Aligned_cols=141 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHH--HHHHHhhhHHHHHHHhcc-ccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHH
Q 012292 147 SVEQLLHSKSQELDKVTLEC--LKLKQRNMDLAKELASLK-LVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRN 223 (466)
Q Consensus 147 sLeqLL~~q~eEVeklkeE~--~rLq~rn~alakeL~sLK-lvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~ 223 (466)
.++.+...+..++..+.++- .....+...+...+..|+ ++..-....-..||+.. +....++.-+|.+.-...-
T Consensus 1030 r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~---e~e~kElk~~l~kkr~e~i 1106 (1189)
T KOG1265|consen 1030 RVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESL---EKETKELKKKLDKKRMEDI 1106 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccchhHH
Q 012292 224 KNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKKASQKEE 290 (466)
Q Consensus 224 k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~~~~~~~ 290 (466)
+.-.....+-++-.+-..-..+-+++--++|.+|.+..+.=+..|..+.-+.|..|...++...+++
T Consensus 1107 k~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~kal~~e~ 1173 (1189)
T KOG1265|consen 1107 KVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEKALDAEA 1173 (1189)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
No 436
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=39.33 E-value=2.4e+02 Score=25.78 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=24.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 229 LMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 229 L~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
|.++++.|.+....+.+.|+++...+..+....+.++...
T Consensus 99 l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 99 LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555666667777777776666666544
No 437
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=39.15 E-value=16 Score=25.25 Aligned_cols=11 Identities=18% Similarity=0.588 Sum_probs=8.4
Q ss_pred ccccccccccc
Q 012292 10 TICSICYEDLK 20 (466)
Q Consensus 10 ltCpICLe~f~ 20 (466)
.+||=|.-.|.
T Consensus 3 i~Cp~C~~~y~ 13 (36)
T PF13717_consen 3 ITCPNCQAKYE 13 (36)
T ss_pred EECCCCCCEEe
Confidence 57888888776
No 438
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=38.95 E-value=3.1e+02 Score=25.18 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012292 253 KINKLKTRVQELETAVE 269 (466)
Q Consensus 253 ei~~Lk~~v~eLqk~le 269 (466)
.++.|++++..||...+
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34444445555555444
No 439
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=38.68 E-value=4.1e+02 Score=26.46 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 012292 145 KVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKE 179 (466)
Q Consensus 145 ~esLeqLL~~q~eEVeklkeE~~rLq~rn~alake 179 (466)
+++++..+.-+.+|.+.+..++..|+..|.++...
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~ 126 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAK 126 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666677777777777777777765443
No 440
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.65 E-value=53 Score=30.75 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 012292 136 ALKNEALRQKVSVEQLLHSKSQELDKVTLEC 166 (466)
Q Consensus 136 ~~l~EkLk~~esLeqLL~~q~eEVeklkeE~ 166 (466)
+.+.+.+.+++.|+..++.+++|+..++.|.
T Consensus 17 alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 17 ALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555566666666655555555
No 441
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=38.58 E-value=2e+02 Score=29.71 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=66.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH----------HHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 207 NNKDTIDVLRKSLVIRNKNYTELM----------AKCNLLGREKARFS--EKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 207 ~~~e~~d~Lkk~l~~~~k~yeeL~----------~k~e~L~ree~~~~--~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
.+....-+|.|=++=.+|.|++.+ ++|.+|++.+.+=. .++++.+..++.|..++.-.-..++.....
T Consensus 79 ~~gshssTLdkLyaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~kg~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~ 158 (312)
T PF04782_consen 79 GSGSHSSTLDKLYAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAKGADSSKIDKTRASVKDLHTRIRVAIQSVDSISKR 158 (312)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999988 55556655555433 455555555666655555555555554444
Q ss_pred HHHHHHhccccchhHHhhhcCCCCCccccccccCChhhhhhccCCCc
Q 012292 275 VLRALKVSKKASQKEEILKGATEDNSISLCTNNVSLEDQREQHSVPI 321 (466)
Q Consensus 275 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (466)
+.+|+-+.=.|+...-..|+. ..--.++-|-..|.++....
T Consensus 159 -I~kLRDeEL~PQL~eLi~Gl~-----~MWk~M~ecHq~Q~~ii~~~ 199 (312)
T PF04782_consen 159 -IEKLRDEELYPQLVELIQGLM-----RMWKSMLECHQKQFQIIQEA 199 (312)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 445666665565555555544 11223556666665554433
No 442
>PF15616 TerY-C: TerY-C metal binding domain
Probab=38.56 E-value=19 Score=32.36 Aligned_cols=43 Identities=26% Similarity=0.494 Sum_probs=31.6
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
+....||-|-..+--+ +..||+.||.. .....+||-|......
T Consensus 75 ~g~PgCP~CGn~~~fa------~C~CGkl~Ci~----------g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 75 IGAPGCPHCGNQYAFA------VCGCGKLFCID----------GEGEVTCPWCGNEGSF 117 (131)
T ss_pred cCCCCCCCCcChhcEE------EecCCCEEEeC----------CCCCEECCCCCCeeee
Confidence 3458999999887533 56899999942 1357899999876653
No 443
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=38.54 E-value=5.2e+02 Score=27.64 Aligned_cols=172 Identities=19% Similarity=0.167 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012292 88 DPEVSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECL 167 (466)
Q Consensus 88 ~~e~l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~ 167 (466)
+.+.+..++.+-...-.+....-..+..+++.++.++..+.+|........-.-+..++.-++.|+.-+.|-..+ ..
T Consensus 394 hrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQEL---na 470 (593)
T KOG4807|consen 394 HREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQEL---NA 470 (593)
T ss_pred HHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HH
Q ss_pred HHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHH-
Q 012292 168 KLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRNK--NYTELMAKCNLLGREKARFS- 244 (466)
Q Consensus 168 rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~k--~yeeL~~k~e~L~ree~~~~- 244 (466)
--++-|.-++.++.+|. -.|-..-+|+|.--..-.+..--++..+.| ...=|++.+..|.-+...+.
T Consensus 471 HNQELnnRLaaEItrLR----------tlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalr 540 (593)
T KOG4807|consen 471 HNQELNNRLAAEITRLR----------TLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALR 540 (593)
T ss_pred HHHHHhhHHHHHHHHHH----------HHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -HHH----------------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 012292 245 -EKL----------------EKAKEKINKLKTRVQELETAVELKD 272 (466)
Q Consensus 245 -~kL----------------ek~~~ei~~Lk~~v~eLqk~le~~~ 272 (466)
+++ .+++-+|..||+.++-.-.+|.+++
T Consensus 541 DKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteALgEKs 585 (593)
T KOG4807|consen 541 DKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEALGEKS 585 (593)
T ss_pred hhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHhcccC
No 444
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.29 E-value=5.8e+02 Score=28.06 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHH
Q 012292 145 KVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRNK 224 (466)
Q Consensus 145 ~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~k 224 (466)
++.|..-+..+.+++......+..+.++ ..+|.... +..-..++.++...+.+-+
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~----v~eLqk~~---------------------ad~~~KI~~~k~r~~~Ls~ 390 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGER----VTELQKHH---------------------ADAVAKIEEAKNRHVELSH 390 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhh---------------------hhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 012292 225 NYTELMAKCNLLG-------REKARFSEKLEKAKEKIN---KLKTRVQELETAVE 269 (466)
Q Consensus 225 ~yeeL~~k~e~L~-------ree~~~~~kLek~~~ei~---~Lk~~v~eLqk~le 269 (466)
-.-.++.+.+.|+ .+|..+..||..+..+.+ +++.+|.+|...++
T Consensus 391 RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r 445 (508)
T KOG3091|consen 391 RILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAPNQLKARLDELYEILR 445 (508)
T ss_pred HHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
No 445
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=38.08 E-value=4e+02 Score=26.17 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Q 012292 217 KSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKE-------KINKLKTRVQELETAVELKDNEVLRALKVS 282 (466)
Q Consensus 217 k~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~-------ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~ 282 (466)
.+|...++.|.... ++...++.+++++.. ++++.+.++++-...+....|+.+-.|...
T Consensus 126 ~el~k~Kk~Y~~~~-------~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~a 191 (237)
T cd07657 126 DEVEKLKSEYQKLL-------EDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEA 191 (237)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 455566688888876 568888888888888888999988887654
No 446
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=38.07 E-value=4.6e+02 Score=26.88 Aligned_cols=59 Identities=19% Similarity=0.337 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 210 DTIDVLRKSLVIRNKNYTELM-------AKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k~yeeL~-------~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
+.++.+...|..+|..|.... .++..|+++-...+.+.++...-|-.+-+....+.+.+
T Consensus 223 ~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~ 288 (309)
T PF09728_consen 223 EKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKEL 288 (309)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444444444554333332 33444444444444444444444444443333333333
No 447
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=37.93 E-value=3.7e+02 Score=25.78 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Q 012292 147 SVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184 (466)
Q Consensus 147 sLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLK 184 (466)
.+...++....||..+++...+|++.|-.+...|..|.
T Consensus 45 evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLD 82 (195)
T PF10226_consen 45 EVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLD 82 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 44456666677888888888899888887777777766
No 448
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.68 E-value=2.2e+02 Score=30.66 Aligned_cols=69 Identities=25% Similarity=0.263 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSE----KLEKAKEKINKLKTRVQELETAVELKDNEVLRAL 279 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~----kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l 279 (466)
.+-.|-++........++|+++-+.+.++..+... ....+..++..|++++..++..++..++++..-+
T Consensus 30 ~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l 102 (429)
T COG0172 30 KLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLL 102 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34444555556666778888888888888875442 3567888889999999999999999888854444
No 449
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=37.62 E-value=18 Score=25.10 Aligned_cols=11 Identities=18% Similarity=0.667 Sum_probs=8.0
Q ss_pred ccccccccccc
Q 012292 10 TICSICYEDLK 20 (466)
Q Consensus 10 ltCpICLe~f~ 20 (466)
.+||-|.-.|.
T Consensus 3 i~CP~C~~~f~ 13 (37)
T PF13719_consen 3 ITCPNCQTRFR 13 (37)
T ss_pred EECCCCCceEE
Confidence 46777777776
No 450
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=37.55 E-value=1.6e+02 Score=24.85 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 243 FSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 243 ~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+..+....+.+|..+++++.+++..+..
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555666666666666666665543
No 451
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=37.37 E-value=3e+02 Score=24.43 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 210 DTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
...+.+...+....-.+..+...++...++...+....++...+|..+++.+.+|+..|+.
T Consensus 46 ~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ 106 (139)
T PF05615_consen 46 FLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEE 106 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444554455555555555555555555566666666666666555
No 452
>PF13514 AAA_27: AAA domain
Probab=36.90 E-value=8.3e+02 Score=29.51 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=4.9
Q ss_pred cCCCCcccc
Q 012292 437 KNPPSPVSL 445 (466)
Q Consensus 437 ~~~~~~~~~ 445 (466)
...|+|+.+
T Consensus 1049 ~~~~lP~Il 1057 (1111)
T PF13514_consen 1049 QGEPLPFIL 1057 (1111)
T ss_pred CCCCCcEEe
Confidence 455566554
No 453
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=36.83 E-value=2.5e+02 Score=23.44 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
..++.....+..|..-+..++..|..
T Consensus 79 ~q~~~l~~~l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 79 QQLESLTQKQEKLSHAINFTEEALNS 104 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55566666677777777777777765
No 454
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=36.75 E-value=58 Score=26.98 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 234 NLLGREKARFSEKLEKAKEKINKLKTRVQELE 265 (466)
Q Consensus 234 e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLq 265 (466)
+.+.++..+...+.......+..|..+..+++
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555544444444
No 455
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=36.60 E-value=2e+02 Score=30.43 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
..+....|...+....+..++|..+.++.. +..+++.++..++..+.+++.+++..+.
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666555555555555433333 3445666666666666666666655443
No 456
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.49 E-value=2e+02 Score=30.83 Aligned_cols=30 Identities=37% Similarity=0.499 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
..++++......+.+++.+|+..+....++
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555544443
No 457
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=35.70 E-value=1.8e+02 Score=33.21 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
+++..++.++..++++.+-|+.....+..+
T Consensus 606 ~e~~~l~~~~~~~ekr~~RLkevf~~ks~e 635 (722)
T PF05557_consen 606 KEIAELKAELASAEKRNQRLKEVFKAKSQE 635 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444
No 458
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=35.67 E-value=3.9e+02 Score=25.35 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012292 244 SEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALK 280 (466)
Q Consensus 244 ~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~ 280 (466)
..+++.+..+|.+++.++..++..++.....+...+.
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~ 198 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELE 198 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888888876665555443
No 459
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=35.30 E-value=3e+02 Score=23.82 Aligned_cols=38 Identities=32% Similarity=0.383 Sum_probs=17.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Q 012292 147 SVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184 (466)
Q Consensus 147 sLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLK 184 (466)
.|...|..+...+.++..|..-|.-+|--|.+..+.|-
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444
No 460
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=35.25 E-value=19 Score=26.86 Aligned_cols=12 Identities=25% Similarity=0.855 Sum_probs=6.5
Q ss_pred CCcCcCccccCC
Q 012292 55 TCPVCKQRCSSS 66 (466)
Q Consensus 55 ~CP~CR~~~~~~ 66 (466)
.||+|..+++..
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 999999988744
No 461
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.25 E-value=1.6e+02 Score=32.21 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDN 273 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~n 273 (466)
.+.+...+.+.|+++...++++++....+...++.++++|+.++.....
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544444444444555555555544444333
No 462
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.88 E-value=27 Score=39.44 Aligned_cols=51 Identities=22% Similarity=0.450 Sum_probs=36.3
Q ss_pred ccccccccccccccCcceeecCCC-cccHHHHHHHHHhcC-CCCCCCCcCcCccccCC
Q 012292 11 ICSICYEDLKPIVEDLQVISICGH-VFHELCLQQWFEYCS-SSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGH-sFC~~CL~~wle~~~-~~~s~~CP~CR~~~~~~ 66 (466)
.|+||-.-++-. ..-.||| ..|..|..+...... ..-...||+||..+...
T Consensus 2 ~c~ic~~s~~~~-----~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPDFV-----GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCcccc-----ccccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 599999887622 3578999 999999988644211 12256789999877654
No 463
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.85 E-value=6.9e+02 Score=27.94 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccchhHHhhhc
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKKASQKEEILKG 294 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~~~~~~~~~~~ 294 (466)
..|++.+.+....+.+++..+..+.+++-- |-.|+..+...-.+++++.
T Consensus 521 ~alektkQel~~tkarl~stqqslaEke~H-L~nLr~errk~Lee~lemK 569 (654)
T KOG4809|consen 521 NALEKTKQELDATKARLASTQQSLAEKEAH-LANLRIERRKQLEEILEMK 569 (654)
T ss_pred HHHHHHhhChhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 567778888888888888888888776543 4455555544444444443
No 464
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=34.84 E-value=1.5e+02 Score=31.96 Aligned_cols=26 Identities=12% Similarity=0.209 Sum_probs=17.3
Q ss_pred hhHHHHHHHHhccccchhHHhhhcCC
Q 012292 271 KDNEVLRALKVSKKASQKEEILKGAT 296 (466)
Q Consensus 271 ~~ne~l~~l~~~~~~~~~~~~~~~~~ 296 (466)
..+.+|+|.-.....--|+.-++-.+
T Consensus 382 is~ali~r~~~~e~~w~k~~~tp~~~ 407 (699)
T KOG4367|consen 382 ISDALIRRVHLTEDQWGKGTLTPRMT 407 (699)
T ss_pred hhhHHHHHhhhhHHhhcccccCCccc
Confidence 67788888887776555555555444
No 465
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=34.59 E-value=3.8e+02 Score=24.86 Aligned_cols=54 Identities=26% Similarity=0.439 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHH
Q 012292 227 TELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL---KDNEVLRALK 280 (466)
Q Consensus 227 eeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~---~~ne~l~~l~ 280 (466)
.+|..++++|..+...+..++..+...+..|.++-.+|...+.. +.+++++.++
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLK 148 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555556666666666666666665544433 7777777665
No 466
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.37 E-value=7e+02 Score=27.91 Aligned_cols=10 Identities=0% Similarity=-0.320 Sum_probs=5.4
Q ss_pred cccccccccc
Q 012292 10 TICSICYEDL 19 (466)
Q Consensus 10 ltCpICLe~f 19 (466)
+-||.|+..-
T Consensus 137 L~YPf~~siS 146 (581)
T KOG0995|consen 137 LKYPFLLSIS 146 (581)
T ss_pred CCCCcccchh
Confidence 4566665543
No 467
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.33 E-value=1.7e+02 Score=29.33 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKT-RVQELETAVEL 270 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~-~v~eLqk~le~ 270 (466)
.+-.|+.++..+++.+.+-.+++=.-.+...-++.+ ++...+.+++.. +|+.|++..++
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~ 285 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEE 285 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777776666555332222333222211 233345555544 37777777666
No 468
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=33.85 E-value=47 Score=37.99 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 012292 256 KLKTRVQEL 264 (466)
Q Consensus 256 ~Lk~~v~eL 264 (466)
+|+.++..|
T Consensus 521 ~L~~~~~~L 529 (722)
T PF05557_consen 521 RLRQELEEL 529 (722)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 469
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=33.59 E-value=1.4e+02 Score=24.29 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=30.1
Q ss_pred HHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 012292 228 ELMAKCNLLGREKARFS-EKLEKAKEKINKLKTRVQELET 266 (466)
Q Consensus 228 eL~~k~e~L~ree~~~~-~kLek~~~ei~~Lk~~v~eLqk 266 (466)
....+.+-..|++.... .-|.++..+|+.|+++|..|+.
T Consensus 39 ~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 39 SALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556668888888 8888888889999999888874
No 470
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.45 E-value=4.1e+02 Score=24.97 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=38.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 207 NNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFS-----EKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 207 ~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~-----~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
+..+..+.|...+.......++|....+++.-+.+.+. ++++.....|.+|++++..++......
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 34455566666666666666666666666666665544 556666666666666666655544443
No 471
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.43 E-value=3.1e+02 Score=23.46 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=14.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 231 AKCNLLGREKARFSEKLEKAKEKINKLKTRVQE 263 (466)
Q Consensus 231 ~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~e 263 (466)
.+++.|.+......+.+.+...+++.++..++.
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444445444443
No 472
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=33.34 E-value=29 Score=39.20 Aligned_cols=52 Identities=17% Similarity=0.441 Sum_probs=31.3
Q ss_pred CCccccccccccc-ccccCcceeecCCCcccHHHHHH-H-HHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQ-W-FEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~-w-le~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.-+.|||+.-.+. |. ....|.|. .|... | ++.......+.||+|.+.+....
T Consensus 305 vSL~CPl~~~Rm~~P~-----r~~~CkHl---QcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~ 359 (636)
T KOG2169|consen 305 VSLNCPLSKMRMSLPA-----RGHTCKHL---QCFDALSYLQMNEQKPTWRCPVCQKAAPFEG 359 (636)
T ss_pred eEecCCcccceeecCC-----cccccccc---eecchhhhHHhccCCCeeeCccCCccccccc
Confidence 3478999887775 43 23345554 45443 3 23222346789999988776554
No 473
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=33.30 E-value=2.6e+02 Score=22.59 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012292 253 KINKLKTRVQELETAVEL 270 (466)
Q Consensus 253 ei~~Lk~~v~eLqk~le~ 270 (466)
++-+||..+..|++.+..
T Consensus 44 eNieLKve~~~L~~el~~ 61 (75)
T PF07989_consen 44 ENIELKVEVESLKRELQE 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 474
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=33.24 E-value=9.8e+02 Score=29.21 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 012292 250 AKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 250 ~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+..++..++..++.||..++.
T Consensus 213 ~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666667777666666
No 475
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.13 E-value=3.1e+02 Score=30.60 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=8.0
Q ss_pred cccCcccccccCcccccCcc
Q 012292 347 KNIDANHTREGGSAKSHGKE 366 (466)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~ 366 (466)
+||.-++-.-|..+.-..++
T Consensus 364 ~niT~~~~~~g~P~~~~l~~ 383 (555)
T TIGR03545 364 SNITNDHDLLGKPTTINLSA 383 (555)
T ss_pred EecCCChhhhCCCeEEEEec
Confidence 33444444444444333333
No 476
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=32.99 E-value=4.6e+02 Score=25.35 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=13.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012292 96 VKILEVKVSRLHTVLESQGKEIKEINEEL 124 (466)
Q Consensus 96 l~rLe~kl~~L~~~Le~~~~~lk~L~eel 124 (466)
+..+..++..+...++.....+..+...+
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL 34 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKL 34 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 477
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=32.62 E-value=2.3e+02 Score=21.80 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=17.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 232 KCNLLGREKARFSEKLEKAKEKINKLKTRVQELET 266 (466)
Q Consensus 232 k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk 266 (466)
++++|..++..+..+...+..++..|+..++..+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555445555555555555554444433
No 478
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=32.58 E-value=4.4e+02 Score=25.05 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-h
Q 012292 96 VKILEVKVSR-LHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQR-N 173 (466)
Q Consensus 96 l~rLe~kl~~-L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~r-n 173 (466)
+.++...+.+ +...++....-..-++..+..+...+.+-...+-..+-....++..+.....++............. +
T Consensus 3 f~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~ 82 (221)
T PF04012_consen 3 FKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGR 82 (221)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q ss_pred hHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--HH-----
Q 012292 174 MDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFS--EK----- 246 (466)
Q Consensus 174 ~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~--~k----- 246 (466)
-.+++....-+ ...+..-...-..-......++.|+..+..+...+.++..+.+.|......+. .+
T Consensus 83 edLAr~al~~k-------~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~ 155 (221)
T PF04012_consen 83 EDLAREALQRK-------ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEAL 155 (221)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHh
Q 012292 247 ----LEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 247 ----Lek~~~ei~~Lk~~v~eLqk~le 269 (466)
+..+...+.++++++..++...+
T Consensus 156 ~~~~~~~a~~~~er~e~ki~~~ea~a~ 182 (221)
T PF04012_consen 156 ASFSVSSAMDSFERMEEKIEEMEARAE 182 (221)
T ss_pred ccCCccchHHHHHHHHHHHHHHHHHHH
No 479
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=32.42 E-value=5.4e+02 Score=25.99 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 012292 248 EKAKEKINKLKTRVQELETAVELKD 272 (466)
Q Consensus 248 ek~~~ei~~Lk~~v~eLqk~le~~~ 272 (466)
+.++...+.....|-.||..|++..
T Consensus 267 ~eLdedVEgmqsTiliLQq~Lketr 291 (330)
T KOG2991|consen 267 EELDEDVEGMQSTILILQQKLKETR 291 (330)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHH
Confidence 3344444444444445555555544
No 480
>PHA02414 hypothetical protein
Probab=32.38 E-value=2e+02 Score=24.67 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 222 RNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 222 ~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
++....+|..++..|.++.+--..|..-.-.+|++|++.+..|...-..
T Consensus 34 L~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n~k 82 (111)
T PHA02414 34 LEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESNKK 82 (111)
T ss_pred HHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhcccc
Confidence 4445667888888999988887788888999999999999988765443
No 481
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.30 E-value=4.2e+02 Score=24.93 Aligned_cols=36 Identities=8% Similarity=0.285 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012292 244 SEKLEKAKEKINKLKTRVQELETAVELKDNEVLRAL 279 (466)
Q Consensus 244 ~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l 279 (466)
..++..+..++..|..++..+.+.|....+++..-+
T Consensus 28 ~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 28 QARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888899999999999999888876666
No 482
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.23 E-value=6.8e+02 Score=27.11 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhHH
Q 012292 95 EVKILEVKVSRLH 107 (466)
Q Consensus 95 El~rLe~kl~~L~ 107 (466)
.+..++.++..+.
T Consensus 223 kv~flerkv~ele 235 (502)
T KOG0982|consen 223 KVRFLERKVQELE 235 (502)
T ss_pred HHHHHHHHHHHhh
Confidence 3444555554443
No 483
>PRK05560 DNA gyrase subunit A; Validated
Probab=32.22 E-value=7.2e+02 Score=29.06 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVEL---KDNEVLRALKV 281 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~---~~ne~l~~l~~ 281 (466)
-+..++..|+.+|++++++|+..|+. .-+-+...|..
T Consensus 430 ~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ 469 (805)
T PRK05560 430 LERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLE 469 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44556777777777777777777777 33344445554
No 484
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=32.22 E-value=2.9e+02 Score=23.93 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 241 ARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 241 ~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
..++..+..+-+|+..|+-+-+.|...|.
T Consensus 25 ~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 25 EELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444433333
No 485
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=31.99 E-value=6.8e+02 Score=28.99 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHhcc
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVEL---KDNEVLRALKVSK 283 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~---~~ne~l~~l~~~~ 283 (466)
-+.+++..|+.+|++++++|+..|.. ..+-+...|..=|
T Consensus 427 ~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik 468 (738)
T TIGR01061 427 TDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYK 468 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44556777778888888888887744 4444444444433
No 486
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.96 E-value=49 Score=26.78 Aligned_cols=49 Identities=24% Similarity=0.449 Sum_probs=31.2
Q ss_pred ccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.|--|-..+-|.+.+. .+..=-|+||..|....+. ..||-|...+..+.
T Consensus 7 nCECCDrDLpp~s~dA-~ICtfEcTFCadCae~~l~-------g~CPnCGGelv~RP 55 (84)
T COG3813 7 NCECCDRDLPPDSTDA-RICTFECTFCADCAENRLH-------GLCPNCGGELVARP 55 (84)
T ss_pred CCcccCCCCCCCCCce-eEEEEeeehhHhHHHHhhc-------CcCCCCCchhhcCc
Confidence 4555666665432222 2222238999999997766 78999987766553
No 487
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.93 E-value=2.4e+02 Score=23.21 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 246 KLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
++.++...+..+.+++.+++..|.
T Consensus 77 ~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 77 EIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443
No 488
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=31.87 E-value=9.6 Score=43.65 Aligned_cols=55 Identities=18% Similarity=0.445 Sum_probs=36.7
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHHh-cCCCCCCCCcCcCccccCCC
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEY-CSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~-~~~~~s~~CP~CR~~~~~~~ 67 (466)
..|..|.-....+ + -....|||.||..|+..|.-. ........|++|+..+....
T Consensus 230 ~mC~~C~~tlfn~--h-w~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q 285 (889)
T KOG1356|consen 230 EMCDRCETTLFNI--H-WRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQ 285 (889)
T ss_pred hhhhhhcccccce--e-EEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCCcc
Confidence 4688887666421 1 124679999999999999410 11124567999998887654
No 489
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=31.64 E-value=3.7e+02 Score=30.66 Aligned_cols=24 Identities=46% Similarity=0.678 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 251 KEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 251 ~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
+.|++.||..++.||.+=.=.-||
T Consensus 32 ~~el~~Lk~~vqkLEDEKKFL~nE 55 (654)
T PF09798_consen 32 EEELNKLKSEVQKLEDEKKFLNNE 55 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444333333
No 490
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=31.49 E-value=4.5e+02 Score=25.98 Aligned_cols=42 Identities=29% Similarity=0.325 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHhccccc
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVE-----LKDNEVLRALKVSKKAS 286 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le-----~~~ne~l~~l~~~~~~~ 286 (466)
..+.++.+|+++|++++.+|+..+. ..+|+-|++|...+...
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~ 115 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESL 115 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 5556666666666666666666555 27888888887766433
No 491
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=31.43 E-value=71 Score=24.59 Aligned_cols=48 Identities=23% Similarity=0.450 Sum_probs=0.0
Q ss_pred cccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 12 CSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 12 CpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
|-.|-..+-| ......+-.=-.+||..|....+. ..||-|...+..+.
T Consensus 8 CE~C~~dLp~-~s~~A~ICSfECTFC~~C~e~~l~-------~~CPNCgGelv~RP 55 (57)
T PF06906_consen 8 CECCDKDLPP-DSPEAYICSFECTFCADCAETMLN-------GVCPNCGGELVRRP 55 (57)
T ss_pred ccccCCCCCC-CCCcceEEeEeCcccHHHHHHHhc-------CcCcCCCCccccCC
No 492
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=31.17 E-value=8.5e+02 Score=27.90 Aligned_cols=143 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHH
Q 012292 137 LKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLR 216 (466)
Q Consensus 137 ~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lk 216 (466)
.+..+.++...+...+..+..++......+.+....-.+...+-..|. ...++.+.....+..|.
T Consensus 169 ~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~---------------~~~~~~~~~~~~~~~l~ 233 (670)
T KOG0239|consen 169 LLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLA---------------DSLGNYADLRRNIKPLE 233 (670)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---------------HHhhhhhhHHHhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HhccccchhHHhhh
Q 012292 217 KSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRAL---KVSKKASQKEEILK 293 (466)
Q Consensus 217 k~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l---~~~~~~~~~~~~~~ 293 (466)
.......+.+..|+.++..|.++...+.........++.+....+..++..|++....+.... ..-++.+-.-....
T Consensus 234 ~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 234 GLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred c
Q 012292 294 G 294 (466)
Q Consensus 294 ~ 294 (466)
|
T Consensus 314 G 314 (670)
T KOG0239|consen 314 G 314 (670)
T ss_pred c
No 493
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=31.13 E-value=6.9e+02 Score=26.83 Aligned_cols=174 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 012292 90 EVSRAEVKILEVKVSRLHTVLESQGKEIKE--------INEELCLCKERIKEEAALKNEALRQKVSVEQLLH-------- 153 (466)
Q Consensus 90 e~l~~El~rLe~kl~~L~~~Le~~~~~lk~--------L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~-------- 153 (466)
+.+..++..++..+......+...+.+... +...+..+..++......+.........++..+.
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~ 243 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLA 243 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCc
Q ss_pred -------hhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCC----------ChhHHHHHH
Q 012292 154 -------SKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGAN----------NKDTIDVLR 216 (466)
Q Consensus 154 -------~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~----------~~e~~d~Lk 216 (466)
....++..+..+...+..+...-.-.+..++ .+.+.++......... .+.....|.
T Consensus 244 ~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~-------~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 316 (498)
T TIGR03007 244 GSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATK-------REIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQ 316 (498)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHH-------HHHHHHHHHHHhhccccccCcccccccChHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 217 KSLVIRNKNYTELMAKCNLLGREKARFS---EKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 217 k~l~~~~k~yeeL~~k~e~L~ree~~~~---~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
..+......++.+..+.+.|.++..... ..+-....++..|+.+++..++.++.
T Consensus 317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~ 373 (498)
T TIGR03007 317 IELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQ 373 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=31.10 E-value=2.6e+02 Score=21.85 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 012292 105 RLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLE 165 (466)
Q Consensus 105 ~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE 165 (466)
.|.+.|+.-...-+.+.+++..++.........+++.-.....|.+.+..+..+++.+..+
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 495
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.06 E-value=2.8e+02 Score=22.27 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHH
Q 012292 219 LVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL---KDNEVLRALK 280 (466)
Q Consensus 219 l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~---~~ne~l~~l~ 280 (466)
+-.+...+..+...|..|..+...++.+...+..++..|+...+.|+..-+. +=+.+|.++.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 496
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=30.92 E-value=3.4e+02 Score=23.17 Aligned_cols=102 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHH
Q 012292 144 QKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRN 223 (466)
Q Consensus 144 ~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~ 223 (466)
.++.+-..++..++++..+...+..+...-.-....+..|. .. .........+..-++...
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~---------------~l----~~d~~vyk~VG~vlv~~~ 64 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELE---------------RL----PDDTPVYKSVGNLLVKTD 64 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cC----CCcchhHHHhchhhheec
Q ss_pred H--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 224 K--NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQEL 264 (466)
Q Consensus 224 k--~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eL 264 (466)
. ...+|..+++.+........++++....++.++...++++
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=30.70 E-value=2.3e+02 Score=28.93 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 216 RKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETA 267 (466)
Q Consensus 216 kk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~ 267 (466)
.||-..-+...+.|+-.|+-|.++-.+++..++.+..||..||+-+.+..++
T Consensus 240 tRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~ 291 (294)
T KOG4571|consen 240 TRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKK 291 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 498
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=30.68 E-value=3.7e+02 Score=24.89 Aligned_cols=67 Identities=19% Similarity=0.361 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012292 209 KDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFS-EKLEKAKEKINKLKTRVQELETAVELKDNEV 275 (466)
Q Consensus 209 ~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~-~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~ 275 (466)
...+-..+.++-.+.+.|+.|+.-.+.+.++..-+. +-.+..+.++.+|.++|.+|+..++-.-+.+
T Consensus 71 kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~ 138 (157)
T COG3352 71 KKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDL 138 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 499
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=30.29 E-value=7.5e+02 Score=26.96 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCC
Q 012292 126 LCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNG 205 (466)
Q Consensus 126 ~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~ 205 (466)
.+..|+........+.+..++. ..+..+++..+.+..++..+...+..+...-..+.
T Consensus 325 ll~sqleSqr~y~e~~~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e--------------------- 381 (493)
T KOG0804|consen 325 LLTSQLESQRKYYEQIMSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVE--------------------- 381 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH---------------------
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 012292 206 ANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSKKA 285 (466)
Q Consensus 206 ~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~~ 285 (466)
...-++.-.+....+..+++...-..|.++...-..+|++..+..++.....++--.+|++-=++++=-|-...|+
T Consensus 382 ----~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 382 ----RKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhh
Q ss_pred --chhHHhhhcCCCCCccccccccCChhhhhhcc
Q 012292 286 --SQKEEILKGATEDNSISLCTNNVSLEDQREQH 317 (466)
Q Consensus 286 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (466)
...++-+-.|...+-+....+.+.++-+..+.
T Consensus 458 k~dt~eIqegtI~~~~~s~~~~~~~~~kkk~nrr 491 (493)
T KOG0804|consen 458 KSDTDEIQEGTILITQISPSSSSSVKSKKKSNRR 491 (493)
T ss_pred hcchhhhcCceeeccCCCCCccccccchhhhccc
No 500
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=30.27 E-value=5.4e+02 Score=25.34 Aligned_cols=172 Identities=10% Similarity=0.154 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 012292 87 EDPEVSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLEC 166 (466)
Q Consensus 87 ~~~e~l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~ 166 (466)
..+..+-..++.+...+..+...+...+..+..+..++..+...+.............-..+..-..........+...+
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i 96 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFI 96 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhHHHHHHHhccccccCChhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012292 167 LKLKQRNMDLAKELASLKLVSDLNLDEDEVLKFALLGNGANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEK 246 (466)
Q Consensus 167 ~rLq~rn~alakeL~sLKlvsd~~~eEeE~LK~~~lg~~~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~k 246 (466)
..+... -.+-+.+...++. .........|.+.+.....++++++.+ .+......+..+
T Consensus 97 ~~l~~~-------------------i~~l~~~~~~l~~-~~~~~~~~~l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~E 154 (264)
T PF06008_consen 97 QNLQDN-------------------IQELIEQVESLNE-NGDQLPSEDLQRALAEAQRMLEEMRKR--DFTPQRQNAEDE 154 (264)
T ss_pred HHHHHH-------------------HHHHHHHHHHhCc-ccCCCCHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012292 247 LEKAKEKINKLKTRVQELETAVELKDNEVLRALK 280 (466)
Q Consensus 247 Lek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~ 280 (466)
+..|..-+.++++.+...+...+..-..+...|.
T Consensus 155 l~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~ 188 (264)
T PF06008_consen 155 LKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLN 188 (264)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHH
Done!