Query 012292
Match_columns 466
No_of_seqs 254 out of 1736
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.3 2.7E-12 9.1E-17 102.4 4.9 55 3-67 2-57 (78)
2 2djb_A Polycomb group ring fin 99.3 3E-12 1E-16 100.9 5.0 54 4-67 10-64 (72)
3 4ayc_A E3 ubiquitin-protein li 99.3 1.5E-12 5.2E-17 115.6 3.2 47 9-66 53-100 (138)
4 2yur_A Retinoblastoma-binding 99.2 3.1E-12 1.1E-16 101.5 4.1 55 4-67 10-66 (74)
5 2ea6_A Ring finger protein 4; 99.2 3.4E-12 1.2E-16 98.8 4.2 56 5-65 11-68 (69)
6 3ztg_A E3 ubiquitin-protein li 99.2 4.4E-12 1.5E-16 104.3 4.8 52 4-64 8-61 (92)
7 3ng2_A RNF4, snurf, ring finge 99.2 3.4E-12 1.2E-16 99.6 3.9 58 5-67 6-65 (71)
8 2csy_A Zinc finger protein 183 99.2 4.6E-12 1.6E-16 101.9 4.6 49 5-64 11-60 (81)
9 2ct2_A Tripartite motif protei 99.2 7.4E-12 2.5E-16 101.7 5.8 62 3-67 9-70 (88)
10 2ecy_A TNF receptor-associated 99.2 5.9E-12 2E-16 97.4 4.9 53 4-66 10-63 (66)
11 2ecm_A Ring finger and CHY zin 99.2 5.2E-12 1.8E-16 93.7 4.3 52 7-64 3-54 (55)
12 2ect_A Ring finger protein 126 99.2 5E-12 1.7E-16 100.8 4.4 56 5-67 11-66 (78)
13 2kiz_A E3 ubiquitin-protein li 99.2 8.6E-12 2.9E-16 97.1 5.5 56 4-66 9-64 (69)
14 2ysl_A Tripartite motif-contai 99.2 6.4E-12 2.2E-16 98.7 4.7 54 5-66 16-70 (73)
15 2d8t_A Dactylidin, ring finger 99.2 4.4E-12 1.5E-16 99.6 3.5 52 5-66 11-62 (71)
16 2ecw_A Tripartite motif-contai 99.2 9.9E-12 3.4E-16 99.9 5.3 57 5-67 15-73 (85)
17 1g25_A CDK-activating kinase a 99.2 9.6E-12 3.3E-16 95.9 4.9 54 8-67 2-57 (65)
18 3lrq_A E3 ubiquitin-protein li 99.2 3E-12 1E-16 107.5 2.3 50 8-67 21-72 (100)
19 1x4j_A Ring finger protein 38; 99.2 6.7E-12 2.3E-16 99.5 3.9 54 6-66 20-73 (75)
20 2egp_A Tripartite motif-contai 99.2 3.2E-12 1.1E-16 101.9 1.9 58 4-67 7-67 (79)
21 2xeu_A Ring finger protein 4; 99.2 6.9E-12 2.4E-16 95.6 3.6 55 8-67 2-58 (64)
22 3fl2_A E3 ubiquitin-protein li 99.2 7E-12 2.4E-16 109.0 4.0 48 8-65 51-99 (124)
23 2ep4_A Ring finger protein 24; 99.2 1.3E-11 4.5E-16 97.3 5.2 56 5-67 11-66 (74)
24 2l0b_A E3 ubiquitin-protein li 99.2 1.1E-11 3.7E-16 102.4 4.8 53 6-65 37-89 (91)
25 2ecv_A Tripartite motif-contai 99.2 1.4E-11 4.8E-16 99.0 4.6 57 5-67 15-73 (85)
26 1iym_A EL5; ring-H2 finger, ub 99.2 1.1E-11 3.6E-16 92.2 3.4 51 7-64 3-54 (55)
27 2kre_A Ubiquitin conjugation f 99.2 1.5E-11 5.2E-16 103.6 4.5 52 5-67 25-77 (100)
28 2kr4_A Ubiquitin conjugation f 99.2 1.9E-11 6.4E-16 99.9 4.5 52 5-67 10-62 (85)
29 2ckl_A Polycomb group ring fin 99.1 1.7E-11 5.7E-16 104.1 4.0 49 7-66 13-63 (108)
30 1chc_A Equine herpes virus-1 r 99.1 1.4E-11 4.9E-16 95.4 3.3 49 7-65 3-52 (68)
31 2y43_A E3 ubiquitin-protein li 99.1 1.8E-11 6.1E-16 102.2 3.5 48 8-66 21-70 (99)
32 2ysj_A Tripartite motif-contai 99.1 4.1E-11 1.4E-15 91.6 5.2 47 5-59 16-63 (63)
33 1e4u_A Transcriptional repress 99.1 4.5E-11 1.5E-15 96.3 4.8 57 4-67 6-64 (78)
34 2ecn_A Ring finger protein 141 99.1 1.3E-11 4.4E-16 96.4 1.5 53 4-67 10-62 (70)
35 1v87_A Deltex protein 2; ring- 99.1 5E-11 1.7E-15 101.8 5.4 60 8-67 24-96 (114)
36 1wgm_A Ubiquitin conjugation f 99.1 5.3E-11 1.8E-15 99.9 4.9 52 5-67 18-71 (98)
37 1z6u_A NP95-like ring finger p 99.1 3.8E-11 1.3E-15 108.3 4.2 49 8-66 77-126 (150)
38 1jm7_A BRCA1, breast cancer ty 99.1 5.3E-11 1.8E-15 101.0 4.7 51 9-67 21-72 (112)
39 2ecl_A Ring-box protein 2; RNF 99.1 5.9E-11 2E-15 95.9 4.8 54 8-66 14-77 (81)
40 3l11_A E3 ubiquitin-protein li 99.1 1E-11 3.6E-16 106.4 -0.8 50 6-65 12-62 (115)
41 2ecj_A Tripartite motif-contai 99.1 8.3E-11 2.8E-15 88.0 3.8 47 5-59 11-58 (58)
42 1bor_A Transcription factor PM 99.0 3.3E-11 1.1E-15 90.6 1.5 49 5-67 2-51 (56)
43 2ckl_B Ubiquitin ligase protei 99.0 6.4E-11 2.2E-15 107.9 3.5 50 8-66 53-103 (165)
44 2c2l_A CHIP, carboxy terminus 99.0 9.5E-11 3.3E-15 114.1 4.7 53 5-67 204-257 (281)
45 4ap4_A E3 ubiquitin ligase RNF 99.0 9.8E-11 3.4E-15 101.6 4.1 57 6-67 4-62 (133)
46 3hct_A TNF receptor-associated 99.0 1E-10 3.6E-15 100.9 3.3 53 5-67 14-67 (118)
47 2yu4_A E3 SUMO-protein ligase 99.0 2.2E-10 7.6E-15 95.1 5.1 57 5-67 3-65 (94)
48 1rmd_A RAG1; V(D)J recombinati 99.0 1.5E-10 5.3E-15 99.2 3.8 50 8-67 22-72 (116)
49 1jm7_B BARD1, BRCA1-associated 99.0 8E-11 2.7E-15 101.4 1.3 46 8-66 21-68 (117)
50 3dpl_R Ring-box protein 1; ubi 98.9 5.3E-10 1.8E-14 95.2 5.1 53 8-65 36-101 (106)
51 2f42_A STIP1 homology and U-bo 98.9 4.6E-10 1.6E-14 104.1 4.4 53 5-67 102-155 (179)
52 3knv_A TNF receptor-associated 98.9 1.5E-10 5.3E-15 103.3 0.5 49 6-64 28-77 (141)
53 3htk_C E3 SUMO-protein ligase 98.8 9.1E-10 3.1E-14 107.2 3.4 56 4-67 176-234 (267)
54 3hcs_A TNF receptor-associated 98.8 1.8E-09 6E-14 98.7 3.9 53 5-67 14-67 (170)
55 4ap4_A E3 ubiquitin ligase RNF 98.8 1.5E-09 5E-14 94.1 3.0 56 7-67 70-127 (133)
56 4ic3_A E3 ubiquitin-protein li 98.8 8E-10 2.8E-14 87.7 1.2 44 9-66 24-68 (74)
57 2y1n_A E3 ubiquitin-protein li 98.8 2.5E-09 8.6E-14 109.9 4.4 50 9-67 332-381 (389)
58 2vje_A E3 ubiquitin-protein li 98.8 2.4E-09 8.3E-14 82.6 3.3 49 7-65 6-57 (64)
59 2vje_B MDM4 protein; proto-onc 98.8 3E-09 1E-13 81.9 3.3 49 7-65 5-56 (63)
60 4a0k_B E3 ubiquitin-protein li 98.8 1E-09 3.5E-14 95.0 0.5 53 8-65 47-112 (117)
61 2d8s_A Cellular modulator of i 98.7 1.4E-08 4.8E-13 82.1 5.8 58 4-67 10-72 (80)
62 2ecg_A Baculoviral IAP repeat- 98.7 4.2E-09 1.4E-13 83.6 2.5 44 9-66 25-69 (75)
63 1wim_A KIAA0161 protein; ring 98.6 7.4E-09 2.5E-13 85.6 2.1 53 7-62 3-61 (94)
64 2yho_A E3 ubiquitin-protein li 98.6 1.3E-08 4.5E-13 81.8 1.7 44 9-66 18-62 (79)
65 2ea5_A Cell growth regulator w 98.5 5.9E-08 2E-12 75.8 3.6 46 7-66 13-59 (68)
66 2bay_A PRE-mRNA splicing facto 98.4 6.4E-08 2.2E-12 74.1 2.5 48 9-67 3-52 (61)
67 2ct0_A Non-SMC element 1 homol 98.4 1.3E-07 4.6E-12 75.2 3.4 51 9-66 15-65 (74)
68 3k1l_B Fancl; UBC, ring, RWD, 98.2 6.5E-07 2.2E-11 90.1 2.9 58 7-65 306-373 (381)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.1 2.5E-06 8.6E-11 65.0 4.8 52 6-65 3-59 (60)
70 3vk6_A E3 ubiquitin-protein li 98.0 3.9E-06 1.3E-10 69.9 4.3 49 11-67 3-51 (101)
71 3t6p_A Baculoviral IAP repeat- 97.0 0.00012 4E-09 74.4 0.3 31 27-66 308-339 (345)
72 3nw0_A Non-structural maintena 96.9 0.00059 2E-08 65.8 4.0 51 9-66 180-230 (238)
73 1i84_S Smooth muscle myosin he 96.2 0.022 7.5E-07 66.4 11.9 32 96-127 866-897 (1184)
74 1c1g_A Tropomyosin; contractIl 96.1 0.84 2.9E-05 42.1 24.9 28 241-268 177-204 (284)
75 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0028 9.7E-08 52.2 2.6 34 8-44 2-36 (101)
76 1i84_S Smooth muscle myosin he 95.9 0.03 1E-06 65.3 11.5 36 95-130 858-893 (1184)
77 3vkg_A Dynein heavy chain, cyt 95.9 0.74 2.5E-05 58.5 24.0 62 209-270 2034-2095(3245)
78 3na7_A HP0958; flagellar bioge 95.7 1.6 5.4E-05 41.9 23.3 44 213-256 100-143 (256)
79 3oja_B Anopheles plasmodium-re 95.5 0.2 7E-06 53.3 15.4 56 215-270 528-583 (597)
80 3vkg_A Dynein heavy chain, cyt 95.3 2 6.9E-05 54.7 25.0 72 211-283 2015-2086(3245)
81 2dfs_A Myosin-5A; myosin-V, in 95.1 0.33 1.1E-05 56.0 16.1 56 212-270 993-1048(1080)
82 3o0z_A RHO-associated protein 93.7 3.9 0.00013 36.9 20.3 62 221-282 87-148 (168)
83 3na7_A HP0958; flagellar bioge 93.5 5.3 0.00018 38.1 21.1 21 148-168 58-78 (256)
84 2ko5_A Ring finger protein Z; 93.4 0.041 1.4E-06 45.1 2.7 50 6-67 25-75 (99)
85 1ic2_A Tropomyosin alpha chain 92.9 1 3.5E-05 35.7 10.2 63 213-275 2-64 (81)
86 2dfs_A Myosin-5A; myosin-V, in 92.3 2.4 8.1E-05 49.0 16.3 21 101-121 928-948 (1080)
87 3u1c_A Tropomyosin alpha-1 cha 92.0 1.3 4.6E-05 36.6 10.3 63 211-273 3-65 (101)
88 3oja_B Anopheles plasmodium-re 90.7 4.6 0.00016 42.7 15.6 15 33-47 354-368 (597)
89 3u59_A Tropomyosin beta chain; 90.6 2.1 7.2E-05 35.3 10.1 63 211-273 3-65 (101)
90 3i2d_A E3 SUMO-protein ligase 88.4 0.2 6.9E-06 50.9 2.6 53 9-67 249-302 (371)
91 1weo_A Cellulose synthase, cat 87.5 1.1 3.7E-05 36.4 5.8 56 5-64 12-69 (93)
92 3hnw_A Uncharacterized protein 87.5 3.8 0.00013 35.8 10.0 42 230-271 88-129 (138)
93 2cs3_A Protein C14ORF4, MY039 87.2 0.58 2E-05 37.3 4.0 53 6-59 12-64 (93)
94 1wil_A KIAA1045 protein; ring 87.1 0.54 1.9E-05 37.8 3.8 56 3-61 9-75 (89)
95 3hnw_A Uncharacterized protein 87.0 5.6 0.00019 34.7 10.8 52 218-269 83-134 (138)
96 4fo9_A E3 SUMO-protein ligase 86.2 0.26 8.9E-06 49.9 2.0 53 9-67 215-268 (360)
97 3trt_A Vimentin; cytoskeleton, 86.0 3.8 0.00013 31.8 8.4 40 231-270 35-74 (77)
98 2lri_C Autoimmune regulator; Z 83.7 0.62 2.1E-05 35.6 2.6 53 6-64 9-61 (66)
99 1we9_A PHD finger family prote 83.5 0.18 6.3E-06 38.0 -0.4 59 4-63 1-59 (64)
100 2v71_A Nuclear distribution pr 82.7 29 0.001 31.8 18.9 28 94-121 10-37 (189)
101 3m62_A Ubiquitin conjugation f 82.2 0.69 2.4E-05 52.4 3.3 51 6-67 888-940 (968)
102 2yt5_A Metal-response element- 82.0 0.14 4.6E-06 38.9 -1.7 61 4-64 1-63 (66)
103 1deb_A APC protein, adenomatou 81.6 8.7 0.0003 27.7 7.6 44 225-268 4-47 (54)
104 3mq7_A Bone marrow stromal ant 80.0 21 0.0007 30.2 10.7 55 207-264 50-104 (121)
105 3oja_A Leucine-rich immune mol 79.5 59 0.002 33.3 17.5 48 224-271 421-468 (487)
106 2fxo_A Myosin heavy chain, car 79.4 29 0.00098 29.6 15.5 60 208-267 67-126 (129)
107 1mm2_A MI2-beta; PHD, zinc fin 78.8 0.36 1.2E-05 36.2 -0.3 56 2-63 2-57 (61)
108 1wfk_A Zinc finger, FYVE domai 77.9 1 3.5E-05 36.4 2.1 40 3-43 3-42 (88)
109 2xdj_A Uncharacterized protein 77.8 19 0.00066 28.6 9.6 64 210-273 6-69 (83)
110 2v71_A Nuclear distribution pr 77.6 43 0.0015 30.7 23.9 23 250-272 159-181 (189)
111 2i1j_A Moesin; FERM, coiled-co 77.2 8.3 0.00028 41.3 9.7 69 208-276 389-457 (575)
112 3mq7_A Bone marrow stromal ant 76.2 34 0.0012 28.9 14.0 55 221-278 50-106 (121)
113 1l8d_A DNA double-strand break 75.7 5 0.00017 33.1 6.0 53 56-132 50-102 (112)
114 1y02_A CARP2, FYVE-ring finger 73.9 0.37 1.3E-05 41.4 -1.6 48 8-61 18-65 (120)
115 3o0z_A RHO-associated protein 72.6 54 0.0019 29.5 22.2 53 218-270 98-154 (168)
116 2w6a_A ARF GTPase-activating p 72.3 28 0.00094 25.9 8.6 54 205-258 8-61 (63)
117 2ri7_A Nucleosome-remodeling f 72.0 0.83 2.8E-05 41.1 0.2 57 4-62 3-59 (174)
118 2l5u_A Chromodomain-helicase-D 71.9 1.8 6.2E-05 32.3 2.0 51 5-61 7-57 (61)
119 3htk_A Structural maintenance 71.7 26 0.0009 25.5 8.6 50 212-261 7-56 (60)
120 1joc_A EEA1, early endosomal a 71.6 1.4 4.8E-05 37.8 1.5 34 9-43 69-102 (125)
121 3ghg_A Fibrinogen alpha chain; 71.5 49 0.0017 34.9 13.2 61 210-270 110-187 (562)
122 3mq9_A Bone marrow stromal ant 70.6 61 0.0021 33.0 14.1 34 236-269 434-467 (471)
123 2v4h_A NF-kappa-B essential mo 69.9 32 0.0011 28.8 9.3 32 211-242 25-56 (110)
124 3m91_A Proteasome-associated A 69.3 15 0.00053 26.5 6.4 38 227-264 12-49 (51)
125 4h22_A Leucine-rich repeat fli 68.1 37 0.0013 28.1 9.2 46 227-272 40-85 (103)
126 2l5g_B Putative uncharacterize 67.8 13 0.00044 25.8 5.4 26 245-270 9-34 (42)
127 2l5g_B Putative uncharacterize 67.8 10 0.00035 26.3 4.8 24 245-268 16-39 (42)
128 2k16_A Transcription initiatio 67.8 1.1 3.6E-05 34.8 -0.1 57 5-64 14-70 (75)
129 2yw8_A RUN and FYVE domain-con 67.5 2.5 8.7E-05 33.4 2.1 35 8-43 18-52 (82)
130 1wep_A PHF8; structural genomi 67.3 4.9 0.00017 31.4 3.8 57 6-64 9-65 (79)
131 3qh9_A Liprin-beta-2; coiled-c 67.0 35 0.0012 27.0 8.5 47 225-279 27-73 (81)
132 3mpx_A FYVE, rhogef and PH dom 66.4 1.2 4.1E-05 45.4 0.0 54 9-63 375-430 (434)
133 1z2q_A LM5-1; membrane protein 65.8 2.9 9.9E-05 33.2 2.2 35 8-43 20-54 (84)
134 2jee_A YIIU; FTSZ, septum, coi 65.2 50 0.0017 26.2 10.0 46 225-270 28-73 (81)
135 1f62_A Transcription factor WS 65.1 2.4 8.2E-05 30.2 1.4 48 11-61 2-49 (51)
136 1wd2_A Ariadne-1 protein homol 65.1 0.57 2E-05 35.2 -2.0 37 10-46 7-46 (60)
137 1dvp_A HRS, hepatocyte growth 64.7 2.1 7.3E-05 40.0 1.4 34 9-43 161-194 (220)
138 3ghg_A Fibrinogen alpha chain; 64.5 1.5E+02 0.005 31.3 16.2 26 217-242 131-156 (562)
139 3t7l_A Zinc finger FYVE domain 64.5 2.5 8.5E-05 34.1 1.5 35 9-44 20-54 (90)
140 1go4_E MAD1 (mitotic arrest de 64.2 53 0.0018 27.0 9.5 35 208-242 10-44 (100)
141 2ocy_A RAB guanine nucleotide 63.9 78 0.0027 28.0 18.4 27 245-271 122-148 (154)
142 1x4u_A Zinc finger, FYVE domai 63.1 3.2 0.00011 32.9 2.0 35 8-43 13-47 (84)
143 3o36_A Transcription intermedi 63.1 1.4 4.6E-05 40.1 -0.3 50 9-64 4-53 (184)
144 1deq_A Fibrinogen (alpha chain 63.0 1.2E+02 0.004 30.7 13.6 11 104-114 52-62 (390)
145 3zyq_A Hepatocyte growth facto 62.2 2.7 9.2E-05 39.6 1.5 34 9-43 164-197 (226)
146 2jmo_A Parkin; IBR, E3 ligase, 62.0 0.86 2.9E-05 36.0 -1.7 36 9-44 25-68 (80)
147 2ct7_A Ring finger protein 31; 61.7 0.95 3.2E-05 36.2 -1.5 34 11-44 27-61 (86)
148 3qh9_A Liprin-beta-2; coiled-c 61.5 37 0.0013 26.8 7.7 47 214-260 23-76 (81)
149 1vfy_A Phosphatidylinositol-3- 61.1 3.9 0.00013 31.5 2.1 32 10-42 12-43 (73)
150 3u5n_A E3 ubiquitin-protein li 61.0 1.4 4.7E-05 40.9 -0.7 52 6-63 4-55 (207)
151 2zet_C Melanophilin; complex, 60.5 3.4 0.00012 36.8 1.8 53 6-62 65-117 (153)
152 3oja_A Leucine-rich immune mol 60.2 1.5E+02 0.0052 30.1 15.1 45 222-266 433-477 (487)
153 2yql_A PHD finger protein 21A; 59.9 0.84 2.9E-05 33.5 -1.9 53 3-61 3-55 (56)
154 3a7p_A Autophagy protein 16; c 59.6 93 0.0032 27.5 12.3 30 145-174 105-134 (152)
155 1ic2_A Tropomyosin alpha chain 58.8 62 0.0021 25.2 9.7 48 226-273 29-76 (81)
156 2l43_A N-teminal domain from h 58.3 2.8 9.7E-05 33.7 0.8 57 6-65 22-78 (88)
157 1wt6_A Myotonin-protein kinase 57.4 70 0.0024 25.3 9.3 44 227-270 27-70 (81)
158 3htk_A Structural maintenance 56.6 53 0.0018 23.7 8.3 52 218-269 6-57 (60)
159 3lqh_A Histone-lysine N-methyl 56.5 2.2 7.5E-05 39.1 -0.2 55 9-63 2-64 (183)
160 1wen_A Inhibitor of growth fam 56.4 6.4 0.00022 30.3 2.5 53 5-64 12-67 (71)
161 1zbd_B Rabphilin-3A; G protein 55.9 3.9 0.00013 35.5 1.4 54 7-61 53-106 (134)
162 1weu_A Inhibitor of growth fam 55.2 5.7 0.00019 32.3 2.1 51 7-64 34-87 (91)
163 3q8t_A Beclin-1; autophagy, AT 54.5 85 0.0029 25.4 10.7 50 210-259 4-53 (96)
164 1wev_A Riken cDNA 1110020M19; 54.2 1.1 3.9E-05 36.0 -2.2 56 9-64 16-74 (88)
165 3a7p_A Autophagy protein 16; c 53.2 1.2E+02 0.0041 26.7 12.5 75 110-184 63-137 (152)
166 3qne_A Seryl-tRNA synthetase, 52.9 42 0.0014 35.2 8.8 70 211-280 34-106 (485)
167 3i00_A HIP-I, huntingtin-inter 52.5 1.1E+02 0.0036 25.9 10.1 21 210-230 15-35 (120)
168 1gmj_A ATPase inhibitor; coile 52.4 87 0.003 24.9 8.9 28 239-266 52-79 (84)
169 2dq0_A Seryl-tRNA synthetase; 51.3 49 0.0017 34.2 9.1 61 220-280 41-104 (455)
170 3v43_A Histone acetyltransfera 51.3 16 0.00054 30.3 4.4 52 8-60 4-62 (112)
171 1wle_A Seryl-tRNA synthetase; 51.1 91 0.0031 32.7 11.1 57 224-280 84-151 (501)
172 2lbm_A Transcriptional regulat 50.7 16 0.00054 32.0 4.4 49 8-61 62-116 (142)
173 2v4h_A NF-kappa-B essential mo 50.3 1.1E+02 0.0038 25.5 11.8 74 96-180 26-99 (110)
174 2yy0_A C-MYC-binding protein; 50.3 28 0.00097 25.2 5.0 12 209-220 18-29 (53)
175 2zqm_A Prefoldin beta subunit 49.6 90 0.0031 25.3 8.9 6 260-265 99-104 (117)
176 3cvf_A Homer-3, homer protein 49.2 95 0.0032 24.4 9.8 23 147-169 52-74 (79)
177 1ytz_T Troponin T; muscle, THI 49.1 44 0.0015 27.8 6.7 40 225-264 50-89 (107)
178 2ro1_A Transcription intermedi 48.6 3.2 0.00011 38.0 -0.4 50 9-64 2-51 (189)
179 4gkw_A Spindle assembly abnorm 48.3 1.3E+02 0.0046 25.8 18.3 47 210-263 112-158 (167)
180 3nmd_A CGMP dependent protein 48.2 41 0.0014 26.0 5.9 22 251-272 32-53 (72)
181 3ask_A E3 ubiquitin-protein li 48.2 3.2 0.00011 39.3 -0.5 50 10-61 175-224 (226)
182 4gkw_A Spindle assembly abnorm 47.5 1.4E+02 0.0047 25.8 22.6 29 225-253 106-134 (167)
183 2yy0_A C-MYC-binding protein; 47.2 34 0.0012 24.8 5.0 24 245-268 26-49 (53)
184 2e6r_A Jumonji/ARID domain-con 46.7 2.1 7E-05 34.8 -1.8 55 5-62 12-66 (92)
185 2ku3_A Bromodomain-containing 45.9 8.1 0.00028 29.7 1.6 54 6-62 13-66 (71)
186 4etp_A Kinesin-like protein KA 45.9 52 0.0018 33.5 8.1 53 213-265 6-58 (403)
187 1hjb_A Ccaat/enhancer binding 45.6 85 0.0029 25.1 7.6 25 245-269 43-67 (87)
188 3m9b_A Proteasome-associated A 45.2 32 0.0011 32.9 6.0 39 226-264 56-94 (251)
189 1j1d_B Troponin T, TNT; THIN f 45.0 47 0.0016 27.6 6.2 41 225-265 50-90 (106)
190 1fp0_A KAP-1 corepressor; PHD 44.9 5.2 0.00018 32.3 0.3 50 7-62 23-72 (88)
191 1ses_A Seryl-tRNA synthetase; 44.8 61 0.0021 33.1 8.5 68 214-281 32-100 (421)
192 3v43_A Histone acetyltransfera 44.7 4.2 0.00014 33.9 -0.3 49 11-61 63-111 (112)
193 2jee_A YIIU; FTSZ, septum, coi 44.5 1.2E+02 0.0039 24.0 11.1 33 96-128 8-40 (81)
194 4emc_A Monopolin complex subun 44.1 32 0.0011 31.5 5.4 39 231-269 20-58 (190)
195 3iv1_A Tumor susceptibility ge 44.0 1.1E+02 0.0039 23.9 9.5 17 251-267 59-75 (78)
196 1xwh_A Autoimmune regulator; P 43.6 2.5 8.7E-05 31.9 -1.6 52 6-63 5-56 (66)
197 3ql9_A Transcriptional regulat 43.6 27 0.00092 30.1 4.7 51 6-61 54-110 (129)
198 2w83_C C-JUN-amino-terminal ki 43.6 90 0.0031 24.4 7.1 44 226-269 32-75 (77)
199 3shb_A E3 ubiquitin-protein li 43.5 3.1 0.00011 32.7 -1.2 33 29-61 44-76 (77)
200 2vpb_A Hpygo1, pygopus homolog 43.2 13 0.00043 28.1 2.3 55 4-60 3-64 (65)
201 3tnu_A Keratin, type I cytoske 42.4 1.6E+02 0.0053 24.9 13.1 73 92-167 36-108 (131)
202 2puy_A PHD finger protein 21A; 42.3 3.3 0.00011 30.6 -1.1 50 8-63 4-53 (60)
203 2jne_A Hypothetical protein YF 42.2 1.4 4.8E-05 36.3 -3.4 42 8-64 31-72 (101)
204 3mtu_A Tropomyosin alpha-1 cha 42.2 77 0.0026 24.5 6.7 45 211-255 3-47 (75)
205 2o35_A Hypothetical protein DU 41.0 10 0.00036 31.2 1.6 13 35-47 42-54 (105)
206 3fyb_A Protein of unknown func 40.9 10 0.00036 31.1 1.6 13 35-47 41-53 (104)
207 1t3j_A Mitofusin 1; coiled coi 40.5 1.2E+02 0.004 24.8 7.7 51 221-275 44-94 (96)
208 1m1j_A Fibrinogen alpha subuni 40.4 3.3E+02 0.011 28.2 12.8 7 343-349 231-237 (491)
209 3he5_B Synzip2; heterodimeric 40.4 90 0.0031 21.6 6.6 40 229-268 8-47 (52)
210 1j1d_C Troponin I, TNI; THIN f 40.3 81 0.0028 27.2 7.2 42 225-266 66-107 (133)
211 3u06_A Protein claret segregat 40.3 74 0.0025 32.5 8.2 58 213-270 6-63 (412)
212 2efr_A General control protein 39.8 2E+02 0.0067 25.4 19.3 62 214-275 74-135 (155)
213 2gmg_A Hypothetical protein PF 39.5 17 0.0006 30.2 2.7 29 28-66 69-97 (105)
214 3tnu_B Keratin, type II cytosk 39.4 1.7E+02 0.0058 24.6 13.9 76 91-169 33-108 (129)
215 2e6s_A E3 ubiquitin-protein li 38.1 4.6 0.00016 31.7 -1.0 49 11-61 28-76 (77)
216 1fxk_A Prefoldin; archaeal pro 37.4 1.2E+02 0.0042 24.1 7.7 22 247-268 81-102 (107)
217 3asl_A E3 ubiquitin-protein li 37.4 5.8 0.0002 30.4 -0.5 49 11-61 20-68 (70)
218 3lss_A Seryl-tRNA synthetase; 36.9 1.6E+02 0.0055 30.7 10.3 30 251-280 109-139 (484)
219 2lv9_A Histone-lysine N-methyl 36.6 8.6 0.00029 31.4 0.4 48 9-61 28-75 (98)
220 2ysm_A Myeloid/lymphoid or mix 36.5 8.6 0.00029 31.8 0.4 51 7-60 5-55 (111)
221 1x79_B RAB GTPase binding effe 35.6 1.9E+02 0.0067 24.1 10.7 23 152-174 79-101 (112)
222 3c6w_A P28ING5, inhibitor of g 35.6 5.2 0.00018 29.6 -1.0 50 5-61 5-57 (59)
223 2no2_A HIP-I, huntingtin-inter 35.5 1.9E+02 0.0064 23.8 15.0 71 111-184 25-95 (107)
224 2vnf_A ING 4, P29ING4, inhibit 35.5 5 0.00017 29.8 -1.1 45 7-61 8-58 (60)
225 3swy_A Cyclic nucleotide-gated 35.0 1.2E+02 0.004 21.4 6.2 35 232-266 6-44 (46)
226 3i00_A HIP-I, huntingtin-inter 34.9 1.9E+02 0.0064 24.4 8.6 43 225-267 41-83 (120)
227 3swf_A CGMP-gated cation chann 34.8 86 0.003 24.3 5.8 44 231-274 7-54 (74)
228 1uii_A Geminin; human, DNA rep 34.8 1.5E+02 0.0051 23.5 7.3 22 247-268 41-62 (83)
229 1fxk_C Protein (prefoldin); ar 34.5 1.4E+02 0.0047 25.0 7.9 27 239-265 103-129 (133)
230 1m1j_C Fibrinogen gamma chain; 34.3 3.9E+02 0.013 27.2 14.9 21 246-266 106-126 (409)
231 3mjh_B Early endosome antigen 33.8 8.9 0.0003 25.4 0.1 14 7-20 3-16 (34)
232 4dnd_A Syntaxin-10, SYN10; str 33.7 1.8E+02 0.0061 24.7 8.4 59 211-269 68-129 (130)
233 2kwj_A Zinc finger protein DPF 33.6 18 0.00062 30.1 2.0 51 10-60 2-59 (114)
234 3iz5_c 60S ribosomal protein L 33.3 1.3E+02 0.0044 25.6 7.3 66 225-290 15-84 (124)
235 3mq9_A Bone marrow stromal ant 32.6 3.9E+02 0.013 26.8 14.8 28 231-258 443-470 (471)
236 4a17_U RPL35, 60S ribosomal pr 32.5 1.6E+02 0.0054 25.1 7.7 63 225-287 14-81 (124)
237 1go4_E MAD1 (mitotic arrest de 32.4 36 0.0012 28.0 3.5 41 151-191 13-53 (100)
238 2ke4_A CDC42-interacting prote 32.4 1.6E+02 0.0056 23.8 7.5 64 211-274 23-91 (98)
239 1t6f_A Geminin; coiled-coil, c 32.1 1.1E+02 0.0039 20.3 5.5 26 241-266 10-35 (37)
240 2e7s_A RAB guanine nucleotide 31.3 2.2E+02 0.0075 24.6 8.4 50 115-164 39-92 (135)
241 1gu4_A CAAT/enhancer binding p 31.0 1.1E+02 0.0036 24.0 5.9 25 245-269 43-67 (78)
242 1hlo_A Protein (transcription 30.7 1.1E+02 0.0038 23.5 6.0 52 220-271 25-76 (80)
243 1ci6_A Transcription factor AT 30.3 1.6E+02 0.0056 21.7 7.9 12 229-240 28-39 (63)
244 1nkp_B MAX protein, MYC proto- 30.2 1E+02 0.0035 23.8 5.8 24 247-270 42-65 (83)
245 1urf_A Protein kinase C-like 1 30.0 1.9E+02 0.0066 22.8 7.1 58 208-265 6-63 (81)
246 2g6q_A Inhibitor of growth pro 29.9 7.3 0.00025 29.1 -1.0 49 6-61 8-59 (62)
247 1x79_B RAB GTPase binding effe 29.8 2.4E+02 0.0084 23.5 13.0 32 95-126 7-38 (112)
248 3u59_A Tropomyosin beta chain; 29.7 2.2E+02 0.0074 22.9 14.3 20 245-264 79-98 (101)
249 1wlq_A Geminin; coiled-coil; 2 29.6 2.1E+02 0.0072 22.6 8.3 23 147-169 42-64 (83)
250 3iox_A AGI/II, PA; alpha helix 29.4 5.1E+02 0.017 27.0 13.9 28 237-264 79-106 (497)
251 1j1e_C Troponin I, TNI; THIN f 29.1 1.6E+02 0.0055 26.7 7.5 43 225-267 66-108 (180)
252 3ol1_A Vimentin; structural ge 28.8 2.5E+02 0.0086 23.3 13.4 47 90-136 16-62 (119)
253 3tul_A Cell invasion protein S 28.8 3E+02 0.01 24.1 9.8 24 226-249 102-125 (158)
254 3cve_A Homer protein homolog 1 28.5 2E+02 0.0069 22.1 10.3 22 147-168 46-67 (72)
255 1wee_A PHD finger family prote 28.1 6.5 0.00022 30.1 -1.6 57 4-63 11-67 (72)
256 2kgg_A Histone demethylase jar 27.8 9.8 0.00033 27.2 -0.6 49 10-60 3-52 (52)
257 1lwu_C Fibrinogen gamma chain; 27.4 1.4E+02 0.0047 29.6 7.4 38 231-268 12-49 (323)
258 2akf_A Coronin-1A; coiled coil 27.3 89 0.003 19.9 3.8 22 250-271 4-25 (32)
259 1z60_A TFIIH basal transcripti 26.9 21 0.00071 26.6 1.0 43 10-59 16-58 (59)
260 2dq3_A Seryl-tRNA synthetase; 26.7 54 0.0018 33.6 4.5 57 225-281 45-104 (425)
261 3s9g_A Protein hexim1; cyclin 26.4 2.7E+02 0.0091 22.8 9.4 59 220-278 33-93 (104)
262 2wvr_A Geminin; DNA replicatio 26.3 3E+02 0.01 25.3 8.8 56 127-183 99-154 (209)
263 1deb_A APC protein, adenomatou 26.2 1.8E+02 0.0062 20.8 6.7 48 212-266 5-52 (54)
264 2l5g_A GPS2 protein, G protein 26.0 80 0.0027 21.2 3.6 21 247-267 10-30 (38)
265 3kv5_D JMJC domain-containing 25.9 9.5 0.00033 40.1 -1.4 57 6-64 34-90 (488)
266 1gd2_E Transcription factor PA 25.8 1.4E+02 0.0047 22.8 5.6 24 246-269 44-67 (70)
267 1lq7_A Alpha3W; three helix bu 25.3 69 0.0024 23.3 3.5 17 223-239 31-47 (67)
268 2j9u_B VPS36, vacuolar protein 25.2 21 0.00071 28.0 0.8 16 1-16 9-24 (76)
269 1x62_A C-terminal LIM domain p 25.2 51 0.0018 24.8 3.1 42 6-65 12-53 (79)
270 2jny_A Uncharacterized BCR; st 25.1 28 0.00095 26.5 1.5 35 7-67 8-42 (67)
271 1lwu_C Fibrinogen gamma chain; 24.6 1.6E+02 0.0056 29.0 7.4 32 239-270 27-58 (323)
272 4e61_A Protein BIM1; EB1-like 24.5 1.4E+02 0.0047 24.8 5.7 25 246-270 12-36 (106)
273 2b9c_A Striated-muscle alpha t 24.4 3.5E+02 0.012 23.4 10.6 43 225-274 74-116 (147)
274 2pk7_A Uncharacterized protein 24.1 28 0.00095 26.7 1.3 34 8-67 7-40 (69)
275 4etp_A Kinesin-like protein KA 24.0 1.8E+02 0.0061 29.5 7.8 48 227-274 6-53 (403)
276 3iv1_A Tumor susceptibility ge 23.9 2.6E+02 0.0089 21.8 10.0 14 254-267 48-61 (78)
277 2jr6_A UPF0434 protein NMA0874 23.9 30 0.001 26.3 1.5 35 7-67 6-40 (68)
278 1wlq_A Geminin; coiled-coil; 2 23.7 2E+02 0.0069 22.7 6.2 21 247-267 47-67 (83)
279 3kqi_A GRC5, PHD finger protei 23.6 14 0.00046 28.5 -0.6 56 8-64 8-63 (75)
280 2jmi_A Protein YNG1, ING1 homo 23.4 14 0.00049 29.8 -0.5 50 5-61 22-75 (90)
281 3caz_A BAR protein; thermo-aci 23.4 2.5E+02 0.0085 25.7 7.7 32 236-267 96-127 (294)
282 3swk_A Vimentin; cytoskeleton, 23.3 2.7E+02 0.0093 21.8 11.1 39 100-138 6-44 (86)
283 2hf1_A Tetraacyldisaccharide-1 23.2 28 0.00097 26.5 1.2 16 52-67 25-40 (68)
284 2wt7_A Proto-oncogene protein 23.2 2.2E+02 0.0077 20.8 6.7 41 223-263 22-62 (63)
285 3o70_A PHD finger protein 13; 23.0 15 0.00052 27.9 -0.3 53 4-61 14-66 (68)
286 2d8v_A Zinc finger FYVE domain 23.0 39 0.0013 25.7 1.9 35 4-44 3-38 (67)
287 3trt_A Vimentin; cytoskeleton, 22.9 2.4E+02 0.0084 21.1 10.2 37 147-183 39-75 (77)
288 3jsv_C NF-kappa-B essential mo 22.7 3.1E+02 0.01 22.2 11.7 51 134-184 31-81 (94)
289 2fiy_A Protein FDHE homolog; F 22.6 10 0.00034 37.6 -1.9 46 7-62 180-231 (309)
290 2eqb_B RAB guanine nucleotide 22.3 3.2E+02 0.011 22.2 12.8 45 122-166 26-74 (97)
291 2xqn_T Testin, TESS; metal-bin 22.1 48 0.0016 27.3 2.6 46 10-66 31-76 (126)
292 2js4_A UPF0434 protein BB2007; 21.7 34 0.0012 26.2 1.4 35 7-67 6-40 (70)
293 1nlw_A MAD protein, MAX dimeri 21.3 1.5E+02 0.0052 23.0 5.2 10 210-219 37-46 (80)
294 1txp_A HnRNP C, heterogeneous 21.2 52 0.0018 20.7 1.9 24 248-271 2-25 (28)
295 4rxn_A Rubredoxin; electron tr 21.1 48 0.0016 24.1 2.0 43 9-62 3-45 (54)
296 3jsv_C NF-kappa-B essential mo 21.0 3.3E+02 0.011 22.0 10.5 26 245-270 61-86 (94)
297 2xb1_A Pygopus homolog 2, B-ce 20.8 27 0.00093 28.7 0.7 56 9-64 3-63 (105)
298 4ayb_P DNA-directed RNA polyme 20.8 9.8 0.00033 27.1 -1.7 29 29-64 6-34 (48)
299 3d0f_A Penicillin-binding 1 tr 20.8 66 0.0023 26.0 3.1 36 417-456 57-94 (106)
300 2efk_A CDC42-interacting prote 20.3 5.2E+02 0.018 23.9 24.5 70 213-282 119-195 (301)
301 1dip_A Delta-sleep-inducing pe 20.2 62 0.0021 25.1 2.5 32 255-286 18-51 (78)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.27 E-value=2.7e-12 Score=102.42 Aligned_cols=55 Identities=22% Similarity=0.424 Sum_probs=46.1
Q ss_pred CCCCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 3 IENKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 3 ~~~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.....+++.||||++.|. |+ +++|||+||..||..|+.. +...||+||.++....
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv------~~~CgH~fc~~Ci~~~~~~----~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPV------IVSTGQTYERSSIQKWLDA----GHKTCPKSQETLLHAG 57 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEE------EETTTEEEEHHHHHHHHTT----TCCBCTTTCCBCSSCC
T ss_pred CcCCcccCCCCCccccccCCE------EcCCCCeecHHHHHHHHHH----CcCCCCCCcCCCChhh
Confidence 345567899999999998 54 7899999999999999982 4789999999987553
No 2
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3e-12 Score=100.85 Aligned_cols=54 Identities=26% Similarity=0.512 Sum_probs=44.8
Q ss_pred CCCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 4 ENKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
....+.+.|+||++.|. |+ .+++|||+||..||..|+. ....||+||..+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~-----~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDAT-----TITECLHTFCKSCIVRHFY-----YSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCE-----ECSSSCCEECHHHHHHHHH-----HCSSCTTTCCCCCSSC
T ss_pred hhcCCCCCCCCCChHHHCcC-----EECCCCCHHHHHHHHHHHH-----cCCcCCCcCcccCccc
Confidence 34456789999999997 53 2349999999999999998 4689999999998765
No 3
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.26 E-value=1.5e-12 Score=115.57 Aligned_cols=47 Identities=30% Similarity=0.851 Sum_probs=41.3
Q ss_pred Cccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 9 KTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+++|+||++.|. |+ ++||||+||..||..|+. ....||+||.++...
T Consensus 53 ~~~C~iC~~~~~~~~------~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEAV------TLNCAHSFCSYCINEWMK-----RKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSEE------EETTSCEEEHHHHHHHTT-----TCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCce------ECCCCCCccHHHHHHHHH-----cCCcCCCCCCcCCCC
Confidence 578999999998 53 789999999999999988 568899999998654
No 4
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=3.1e-12 Score=101.45 Aligned_cols=55 Identities=22% Similarity=0.570 Sum_probs=44.9
Q ss_pred CCCCCCccccccccccc-ccccCcceeec-CCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 4 ENKFGKTICSICYEDLK-PIVEDLQVISI-CGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~-P~~~~~~~llp-CGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
....+++.|+||++.|. |+ .++ |||+||..||..|+... +...||+||.++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~------~~~~CgH~fC~~Ci~~~~~~~---~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAV------VIPCCGNSYCDECIRTALLES---DEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCE------ECSSSCCEECTTHHHHHHHHS---SSSCCSSSCCSSCCTT
T ss_pred ccCCCCCCCcCCChHHhCCe------EcCCCCCHHHHHHHHHHHHhc---CCCcCCCCCCcCCCcc
Confidence 44556789999999998 54 688 99999999999999841 2478999999876554
No 5
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.4e-12 Score=98.81 Aligned_cols=56 Identities=30% Similarity=0.711 Sum_probs=44.7
Q ss_pred CCCCCccccccccccc-cc-ccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 5 NKFGKTICSICYEDLK-PI-VEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~-~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
...+...|+||++.|. +. ....+.+++|||+||..||..|+. ....||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----NANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH-----HCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH-----cCCCCCCCCCccCc
Confidence 4456789999999998 31 123335789999999999999998 46799999998864
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.24 E-value=4.4e-12 Score=104.31 Aligned_cols=52 Identities=21% Similarity=0.572 Sum_probs=43.2
Q ss_pred CCCCCCccccccccccc-ccccCcceeec-CCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 4 ENKFGKTICSICYEDLK-PIVEDLQVISI-CGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~-P~~~~~~~llp-CGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
+...+++.||||++.|. |+ +++ |||+||..||..|+... +...||+||..+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~------~~~~CgH~fC~~Ci~~~~~~~---~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAV------VIPCCGNSYCDECIRTALLES---DEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSSCE------ECTTTCCEECHHHHHHHHHHC---TTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcCce------ECCCCCCHHHHHHHHHHHHhc---CCCcCcCCCCcCC
Confidence 34456799999999998 54 788 99999999999999731 3479999999974
No 7
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.24 E-value=3.4e-12 Score=99.64 Aligned_cols=58 Identities=29% Similarity=0.689 Sum_probs=46.4
Q ss_pred CCCCCccccccccccc-cc-ccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLK-PI-VEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~-~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
...++..|+||++.|. |. .......++|||+||..||..|+. ....||+||..+...+
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----NANTCPTCRKKINHKR 65 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH-----HCSBCTTTCCBCCCCS
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH-----cCCCCCCCCCccChhh
Confidence 3456789999999997 41 123345789999999999999998 4579999999998654
No 8
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.6e-12 Score=101.95 Aligned_cols=49 Identities=27% Similarity=0.614 Sum_probs=42.4
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.....+.|+||++.|. |+ +++|||+||..||..|+. ....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~------~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPV------VTKCRHYFCESCALEHFR-----ATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEE------ECTTSCEEEHHHHHHHHH-----HCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCee------EccCCCHhHHHHHHHHHH-----CCCcCCCcCcccc
Confidence 3445789999999998 53 789999999999999998 4679999999986
No 9
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7.4e-12 Score=101.66 Aligned_cols=62 Identities=19% Similarity=0.457 Sum_probs=48.6
Q ss_pred CCCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 3 IENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 3 ~~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.+...+.+.|+||++.|.. ....+.+++|||+||..||..|+... .....||+||..+....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~~~~~~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 9 LDALREVLECPICMESFTE-EQLRPKLLHCGHTICRQCLEKLLASS--INGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCT-TSSCEEECSSSCEEEHHHHHHHHHHC--SSCBCCTTTCCCBCCSS
T ss_pred hhhccCCCCCccCCccccc-cCCCeEECCCCChhhHHHHHHHHHcC--CCCcCCCCCCCcccchh
Confidence 4556678899999999974 12335678999999999999999842 13589999999987653
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5.9e-12 Score=97.36 Aligned_cols=53 Identities=26% Similarity=0.510 Sum_probs=44.2
Q ss_pred CCCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 4 ENKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+...+.+.|+||++.+. |+ .++|||+||..||..|+. .....||.||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~------~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPK------QTECGHRFCESCMAALLS----SSSPKCTACQESIVKD 63 (66)
T ss_dssp CSCCCCEECTTTCCEESSCC------CCSSSCCCCHHHHHHHHT----TSSCCCTTTCCCCCTT
T ss_pred hcCCcCCCCCCCChHhcCee------ECCCCCHHHHHHHHHHHH----hCcCCCCCCCcCCChh
Confidence 34456789999999998 54 579999999999999996 2567899999998754
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.23 E-value=5.2e-12 Score=93.73 Aligned_cols=52 Identities=29% Similarity=0.750 Sum_probs=42.8
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.....|+||++.|.. ....+..++|||+||..||..|+. ....||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~-~~~~~~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHT-SRVVAHVLPCGHLLHRTCYEEMLK-----EGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCT-TTSCEEECTTSCEEETTHHHHHHH-----HTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcC-CCcCeEecCCCCcccHHHHHHHHH-----cCCcCCCCCCcCC
Confidence 456789999999963 224456889999999999999999 3489999999875
No 12
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.23 E-value=5e-12 Score=100.82 Aligned_cols=56 Identities=29% Similarity=0.679 Sum_probs=45.5
Q ss_pred CCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.......|+||++.|... .....++|||+||..||.+|+. ....||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~--~~~~~~~C~H~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALG--ESVRQLPCNHLFHDSCIVPWLE-----QHDSCPVCRKSLTGQN 66 (78)
T ss_dssp TSSSSCCCTTTTSCCCTT--SCEEECTTSCEEETTTTHHHHT-----TTCSCTTTCCCCCCSC
T ss_pred cCCCCCCCeeCCccccCC--CCEEEeCCCCeecHHHHHHHHH-----cCCcCcCcCCccCCcc
Confidence 445678999999999721 2334679999999999999998 5579999999998765
No 13
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=8.6e-12 Score=97.09 Aligned_cols=56 Identities=25% Similarity=0.644 Sum_probs=44.5
Q ss_pred CCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+.......|+||++.|.. ...+..++|||.||..||..|+. ....||+||..+...
T Consensus 9 ~~~~~~~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEE--GEDVRRLPCMHLFHQVCVDQWLI-----TNKKCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTBCCCS--SSCEEECTTSCEEEHHHHHHHHH-----HCSBCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCccccC--CCcEEEeCCCCHHHHHHHHHHHH-----cCCCCcCcCccccCc
Confidence 345567899999999962 12345789999999999999998 456799999988754
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6.4e-12 Score=98.70 Aligned_cols=54 Identities=33% Similarity=0.646 Sum_probs=44.0
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
...+.+.|+||++.|. |+ +++|||+||..||..|+.. .+....||+||..+...
T Consensus 16 ~~~~~~~C~IC~~~~~~~~------~~~CgH~fC~~Ci~~~~~~--~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPV------TIDCGHNFCLKCITQIGET--SCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEE------ECTTCCEEEHHHHHHHCSS--SCSCCCCSSSCCCCCCC
T ss_pred hCccCCEeccCCcccCCeE------EcCCCChhhHHHHHHHHHc--CCCCCCCCCCCCcCCcc
Confidence 3456789999999998 43 6799999999999999862 12467999999998754
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.4e-12 Score=99.61 Aligned_cols=52 Identities=25% Similarity=0.451 Sum_probs=43.3
Q ss_pred CCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
...+...|+||++.+... ..++|||+||..||..|+. ....||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~-----~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP-----VSLPCKHVFCYLCVKGASW-----LGKRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE-----EEETTTEEEEHHHHHHCTT-----CSSBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCC-----EEccCCCHHHHHHHHHHHH-----CCCcCcCcCchhCHh
Confidence 345678999999999832 3689999999999999987 568999999998744
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=9.9e-12 Score=99.88 Aligned_cols=57 Identities=32% Similarity=0.623 Sum_probs=45.9
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcC-CCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCS-SSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~-~~~s~~CP~CR~~~~~~~ 67 (466)
...+.+.|+||++.|. |+ +++|||+||..||..|+.... .+....||.||..+....
T Consensus 15 ~~~~~~~C~IC~~~~~~p~------~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPV------SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCE------ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred hCccCCCCcCCChhhCcce------eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 3456789999999998 53 789999999999999998532 123689999999988654
No 17
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=9.6e-12 Score=95.87 Aligned_cols=54 Identities=26% Similarity=0.584 Sum_probs=43.2
Q ss_pred CCcccccccc-ccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYE-DLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe-~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
++..||||++ .|. |. ....+++|||+||..||.+|+.. +...||.||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~--~~~~~~~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPS--LKLMVNVCGHTLCESCVDLLFVR----GAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSS--CCEEECTTCCCEEHHHHHHHHHT----TSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCc--cCeecCCCCCHhHHHHHHHHHHc----CCCcCCCCCCcccccc
Confidence 4689999999 776 42 22246799999999999999872 4578999999998654
No 18
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.21 E-value=3e-12 Score=107.53 Aligned_cols=50 Identities=22% Similarity=0.638 Sum_probs=42.3
Q ss_pred CCccccccccccc-ccccCccee-ecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLK-PIVEDLQVI-SICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~l-lpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
+++.|+||++.|. |+ . ++|||+||..||..|+.. ....||.||.++....
T Consensus 21 ~~~~C~IC~~~~~~p~------~~~~CgH~FC~~Ci~~~~~~----~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRDAR------LCPHCSKLCCFSCIRRWLTE----QRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSSEE------ECTTTCCEEEHHHHHHHHHH----TCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccCcc------ccCCCCChhhHHHHHHHHHH----CcCCCCCCCCcCCHHH
Confidence 4689999999998 54 5 899999999999999994 2379999999997553
No 19
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=6.7e-12 Score=99.49 Aligned_cols=54 Identities=30% Similarity=0.814 Sum_probs=43.9
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
..+...|+||++.|... .....++|||.||..||..|+. ....||+||..+...
T Consensus 20 ~~~~~~C~IC~~~~~~~--~~~~~l~C~H~fh~~Ci~~w~~-----~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESR--QLLRVLPCNHEFHAKCVDKWLK-----ANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBT--CEEEEETTTEEEETTHHHHHHH-----HCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCC--CeEEEECCCCHhHHHHHHHHHH-----cCCcCcCcCCcCCCC
Confidence 44678999999999731 2345689999999999999998 457899999988754
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.20 E-value=3.2e-12 Score=101.89 Aligned_cols=58 Identities=29% Similarity=0.538 Sum_probs=45.8
Q ss_pred CCCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcC--CCCCCCCcCcCccccCCC
Q 012292 4 ENKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCS--SSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~--~~~s~~CP~CR~~~~~~~ 67 (466)
....+.+.|+||++.|. |+ +++|||+||..||..|+.... .+....||.||..+....
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~------~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPL------SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCCEETTTTEECSSCC------CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hhcccCCCCcCCCcccCCee------ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 34556889999999998 54 689999999999999987311 123679999999998654
No 21
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=6.9e-12 Score=95.65 Aligned_cols=55 Identities=29% Similarity=0.699 Sum_probs=44.4
Q ss_pred CCccccccccccc-cc-ccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLK-PI-VEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~-P~-~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
+...|+||++.|. |. ....+..++|||+||..|+..|+. ....||.||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----NANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH-----HCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH-----cCCCCCCCCccCCccc
Confidence 4679999999997 31 123345789999999999999998 4679999999988654
No 22
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.19 E-value=7e-12 Score=109.01 Aligned_cols=48 Identities=27% Similarity=0.611 Sum_probs=41.7
Q ss_pred CCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 8 GKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
+.++||||++.|. |+ +++|||+||..||..|+.. +...||.||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~------~~~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPI------TTVCQHNVCKDCLDRSFRA----QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEE------ECTTSCEEEHHHHHHHHHT----TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcE------EeeCCCcccHHHHHHHHhH----CcCCCCCCCccCCC
Confidence 4578999999998 54 7899999999999999982 45699999999986
No 23
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=97.32 Aligned_cols=56 Identities=34% Similarity=0.755 Sum_probs=44.1
Q ss_pred CCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
....+..|+||++.|... .....++|||.||..||..|+. ....||+||.++....
T Consensus 11 ~~~~~~~C~IC~~~~~~~--~~~~~~~C~H~f~~~Ci~~~~~-----~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPR--DELGICPCKHAFHRKCLIKWLE-----VRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBCCSS--SCEEEETTTEEEEHHHHHHHHH-----HCSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCcccCCC--CcEEEcCCCCEecHHHHHHHHH-----cCCcCCCcCccccccc
Confidence 345578999999999731 2234569999999999999998 3468999999987543
No 24
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=102.37 Aligned_cols=53 Identities=30% Similarity=0.692 Sum_probs=43.5
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
...+..|+||++.|.. ......++|||.||..||..|+. ....||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~--~~~~~~l~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVK--GDVATELPCHHYFHKPCVSIWLQ-----KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCT--TCEEEEETTTEEEEHHHHHHHHT-----TTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcC--CCcEEecCCCChHHHHHHHHHHH-----cCCcCcCcCccCCC
Confidence 3457789999999973 13345689999999999999998 56799999998864
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=98.96 Aligned_cols=57 Identities=32% Similarity=0.656 Sum_probs=45.6
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcC-CCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCS-SSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~-~~~s~~CP~CR~~~~~~~ 67 (466)
...+.+.|+||++.|. |. .++|||+||..|+..|+.... .++...||.||..+....
T Consensus 15 ~~~~~~~C~IC~~~~~~p~------~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPL------SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCB------CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred HccCCCCCCCCCcccCCce------eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 3456789999999998 43 679999999999999998411 123689999999998654
No 26
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.17 E-value=1.1e-11 Score=92.16 Aligned_cols=51 Identities=27% Similarity=0.725 Sum_probs=41.1
Q ss_pred CCCcccccccccccccccCcceeec-CCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISI-CGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llp-CGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.+...|+||++.|... .....++ |||.||..||..|+. ....||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDG--EEARFLPRCGHGFHAECVDMWLG-----SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTT--SCCEECSSSCCEECTTHHHHTTT-----TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCC--CceEECCCCCCcccHHHHHHHHH-----cCCcCcCCCCEeE
Confidence 4567999999999741 2234565 999999999999987 5678999999874
No 27
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.16 E-value=1.5e-11 Score=103.64 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=45.0
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
..-+++.||||++.|. |+ +++|||+||..||..|+. ...+||+||.+++...
T Consensus 25 ~~p~~~~CpI~~~~m~dPV------~~~cGhtf~r~~I~~~l~-----~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPV------RLPSGTIMDRSIILRHLL-----NSPTDPFNRQTLTESM 77 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEE------EETTTEEEEHHHHHHHTT-----SCSBCSSSCCBCCTTS
T ss_pred cCcHhhCCcCccCcccCCe------ECCCCCEEchHHHHHHHH-----cCCCCCCCCCCCChhh
Confidence 4456799999999998 65 789999999999999988 4689999999988654
No 28
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.15 E-value=1.9e-11 Score=99.92 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=44.5
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
..-+++.||||++.|. |+ +++|||+||..||..|+. ...+||+||.++....
T Consensus 10 ~~p~~~~CpI~~~~m~dPV------~~~cGhtf~r~~I~~~l~-----~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPV------RLPSGTVMDRSIILRHLL-----NSPTDPFNRQMLTESM 62 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEE------ECTTSCEEEHHHHHHHHH-----HCSBCTTTCCBCCGGG
T ss_pred cCchheECcccCchhcCCe------ECCCCCEECHHHHHHHHh-----cCCCCCCCcCCCChHh
Confidence 3456899999999998 65 789999999999999998 3579999999887543
No 29
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.15 E-value=1.7e-11 Score=104.10 Aligned_cols=49 Identities=20% Similarity=0.556 Sum_probs=42.4
Q ss_pred CCCccccccccccc-ccccCcceee-cCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 7 FGKTICSICYEDLK-PIVEDLQVIS-ICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 7 ~~eltCpICLe~f~-P~~~~~~~ll-pCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
.+++.|+||++.|. |+ .+ +|||+||..||..|+. ....||.||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~------~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDAT------TIIECLHSFCKTCIVRYLE-----TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEE------EETTTCCEEEHHHHHHHHT-----SCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcC------EeCCCCChhhHHHHHHHHH-----hCCcCcCCCcccccc
Confidence 45789999999998 54 55 9999999999999998 468999999998754
No 30
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.15 E-value=1.4e-11 Score=95.44 Aligned_cols=49 Identities=33% Similarity=0.701 Sum_probs=41.7
Q ss_pred CCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 7 FGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 7 ~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
.....|+||++.+. |+ ..++|||+||..|+..|+. ....||.||.++..
T Consensus 3 ~~~~~C~IC~~~~~~~~-----~~~~C~H~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYS-----MALPCLHAFCYVCITRWIR-----QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCE-----EETTTTEEESTTHHHHHHH-----HSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCc-----EecCCCCeeHHHHHHHHHh-----CcCcCcCCChhhHh
Confidence 34678999999997 32 5789999999999999998 45799999998874
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.13 E-value=1.8e-11 Score=102.21 Aligned_cols=48 Identities=27% Similarity=0.758 Sum_probs=41.1
Q ss_pred CCccccccccccc-ccccCcceee-cCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 8 GKTICSICYEDLK-PIVEDLQVIS-ICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~ll-pCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+.+.|+||++.|. |+ .+ +|||+||..||..|+. ....||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p~------~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNIAM------IIPQCSHNYCSLCIRKFLS-----YKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSSEE------ECTTTCCEEEHHHHHHHHT-----TCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCCcC------EECCCCCHhhHHHHHHHHH-----CCCCCCCCCCcCChh
Confidence 3578999999998 53 45 8999999999999998 568999999998754
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=4.1e-11 Score=91.63 Aligned_cols=47 Identities=36% Similarity=0.715 Sum_probs=38.8
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCc
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVC 59 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~C 59 (466)
...+++.|+||++.|. |+ .++|||+||..||.+|+.. .+....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~------~~~CgH~fC~~Ci~~~~~~--~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPV------TIDCGHNFCLKCITQIGET--SCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCE------ECTTSSEECHHHHHHHHHH--CSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeE------EeCCCCcchHHHHHHHHHc--CCCCCcCcCC
Confidence 3456789999999998 53 6799999999999999984 1246789998
No 33
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.11 E-value=4.5e-11 Score=96.29 Aligned_cols=57 Identities=21% Similarity=0.528 Sum_probs=43.4
Q ss_pred CCCCCCcccccccccccccccCcceee--cCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVIS--ICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~ll--pCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
....++++||||++.+.. .+. .+. +|||+||..|+..|+.. ....||.||.++....
T Consensus 6 ~~~~~~~~CpICle~~~~--~d~-~~~p~~CGH~fC~~Cl~~~~~~----~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEI--DDI-NFFPCTCGYQICRFCWHRIRTD----ENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCCCBCTTTCCBCCT--TTT-TCCSSTTSCCCCHHHHHHHTTS----SCSBCTTTCCBCSSCS
T ss_pred cccccCCcCCccCccCcc--ccc-cccccCCCCCcCHHHHHHHHhc----CCCCCCCCCCccCCCc
Confidence 345678999999998851 011 234 49999999999998752 4689999999998765
No 34
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.3e-11 Score=96.36 Aligned_cols=53 Identities=25% Similarity=0.758 Sum_probs=44.7
Q ss_pred CCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
....+...|+||++.+.. .+++|||+||..||..|+. ....||+||.++....
T Consensus 10 ~~~~~~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD------LILPCAHSFCQKCIDKWSD-----RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS------EEETTTEEECHHHHHHSSC-----CCSSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCcCccC------cccCCCCcccHHHHHHHHH-----CcCcCCCcCCcccCCC
Confidence 344567899999999864 4789999999999999987 6789999999988654
No 35
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.11 E-value=5e-11 Score=101.78 Aligned_cols=60 Identities=27% Similarity=0.526 Sum_probs=44.5
Q ss_pred CCcccccccccccccc-------------cCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLKPIV-------------EDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~P~~-------------~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.+..|+||++.|.... .....+++|||.||..||..|+..........||+||..+....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 4569999999996211 01233789999999999999996433235689999999987553
No 36
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.10 E-value=5.3e-11 Score=99.95 Aligned_cols=52 Identities=8% Similarity=0.072 Sum_probs=44.7
Q ss_pred CCCCCccccccccccc-ccccCcceeecCC-CcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICG-HVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCG-HsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
..-+++.||||++.|. |+ +++|| |+||..||..|+. ...+||+||.++....
T Consensus 18 ~~p~~~~CpI~~~~m~dPV------~~~cG~htf~r~cI~~~l~-----~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPV------VLPSSRVTVDRSTIARHLL-----SDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEE------ECTTTCCEEEHHHHHHHTT-----TSCBCTTTCSBCCTTT
T ss_pred cCcHhcCCcCccccccCCe------ECCCCCeEECHHHHHHHHH-----hCCCCCCCCCCCChhh
Confidence 3456789999999998 65 78999 9999999999998 3579999999987654
No 37
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.09 E-value=3.8e-11 Score=108.33 Aligned_cols=49 Identities=27% Similarity=0.613 Sum_probs=42.3
Q ss_pred CCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 8 GKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+.+.|+||++.|. |+ +++|||+||..||..|+.. ....||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv------~~~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPV------TTECFHNVCKDCLQRSFKA----QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEE------ECTTSCEEEHHHHHHHHHT----TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCE------EcCCCCchhHHHHHHHHHh----CCCcCCCCCccCCCC
Confidence 4578999999998 54 6899999999999999982 446899999999866
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=5.3e-11 Score=101.04 Aligned_cols=51 Identities=27% Similarity=0.735 Sum_probs=42.1
Q ss_pred Cccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 9 KTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.+.|+||++.|. |+ .++|||+||..||..|+... .+...||+||.++....
T Consensus 21 ~~~C~IC~~~~~~p~------~~~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEPV------STKCDHIFCKFCMLKLLNQK--KGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSCC------BCTTSCCCCSHHHHHHHHSS--SSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCeE------ECCCCCHHHHHHHHHHHHhC--CCCCCCcCCCCcCCHhh
Confidence 578999999998 54 68999999999999999832 13468999999988654
No 39
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=5.9e-11 Score=95.90 Aligned_cols=54 Identities=26% Similarity=0.664 Sum_probs=41.8
Q ss_pred CCcccccccccccc----------cccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 8 GKTICSICYEDLKP----------IVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 8 ~eltCpICLe~f~P----------~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
++..|+||++.|.. ..+....+++|||.||..||.+|+. ...+||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-----QNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-----TCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-----hCCCCCCcCCCcchh
Confidence 56789999999963 1222344556999999999999998 567999999988643
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.07 E-value=1e-11 Score=106.43 Aligned_cols=50 Identities=34% Similarity=0.731 Sum_probs=42.1
Q ss_pred CCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 6 KFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 6 ~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
..+++.|+||++.|. |+ +++|||+||..||..|+.. +...||.||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~------~~~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPV------TLPCNHTLCKPCFQSTVEK----ASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCE------ECTTSCEECHHHHCCCCCT----TTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCcee------EcCCCCHHhHHHHHHHHhH----CcCCCCCCCcccCc
Confidence 344688999999998 54 6799999999999999862 46899999998874
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=8.3e-11 Score=88.01 Aligned_cols=47 Identities=43% Similarity=0.984 Sum_probs=38.3
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCc
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVC 59 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~C 59 (466)
...+...|+||++.|. |+ +++|||+||..||..|+.. ......||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~------~~~CgH~fC~~Ci~~~~~~--~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPV------IIECGHNFCKACITRWWED--LERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCC------CCSSCCCCCHHHHHHHTTS--SCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccE------eCCCCCccCHHHHHHHHHh--cCCCCCCCCC
Confidence 3456789999999998 53 6899999999999999762 1256899998
No 42
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=3.3e-11 Score=90.59 Aligned_cols=49 Identities=24% Similarity=0.557 Sum_probs=40.9
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
...+.+.|+||++.|. |. +++|||+||..|+..| ...||+||..+....
T Consensus 2 ee~~~~~C~IC~~~~~~p~------~l~CgH~fC~~Ci~~~--------~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 2 EEFQFLRCQQCQAEAKCPK------LLPCLHTLCSGCLEAS--------GMQCPICQAPWPLGA 51 (56)
T ss_dssp CSCCCSSCSSSCSSCBCCS------CSTTSCCSBTTTCSSS--------SSSCSSCCSSSSCCS
T ss_pred CcccCCCceEeCCccCCeE------EcCCCCcccHHHHccC--------CCCCCcCCcEeecCC
Confidence 3467899999999998 54 7899999999998763 478999999987653
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.05 E-value=6.4e-11 Score=107.91 Aligned_cols=50 Identities=26% Similarity=0.618 Sum_probs=41.4
Q ss_pred CCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 8 GKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
..+.|+||++.|. |+ .+++|||+||..||..|+.. +...||+||.++...
T Consensus 53 ~~~~C~IC~~~~~~p~-----~~~~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLKNTM-----TTKECLHRFCADCIITALRS----GNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCSSEE-----EETTTCCEEEHHHHHHHHHT----TCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhhCcC-----EeCCCCChhHHHHHHHHHHh----CcCCCCCCCCcCCCc
Confidence 4569999999998 53 33499999999999999982 368899999998654
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.04 E-value=9.5e-11 Score=114.15 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=44.3
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
..-..+.||||++.|. |+ +++|||+||..||..|+.. +..+||+||.+++...
T Consensus 204 ~~~~~~~c~i~~~~~~dPv------~~~~gh~f~~~~i~~~~~~----~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPC------ITPSGITYDRKDIEEHLQR----VGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEE------ECSSCCEEETTHHHHHHHH----TCSSCTTTCCCCCGGG
T ss_pred CCCcccCCcCcCCHhcCCe------ECCCCCEECHHHHHHHHHH----CCCCCcCCCCCCchhc
Confidence 4456889999999998 65 7899999999999999984 2345999999997654
No 45
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.03 E-value=9.8e-11 Score=101.62 Aligned_cols=57 Identities=30% Similarity=0.696 Sum_probs=45.8
Q ss_pred CCCCccccccccccc-cc-ccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 6 KFGKTICSICYEDLK-PI-VEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 6 ~~~eltCpICLe~f~-P~-~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
..+.+.|+||++.|. |+ ..+....++|||+||..||.+|+. ....||+||..+....
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----NANTCPTCRKKINHKR 62 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-----TCSBCTTTCCBCTTTC
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-----hCCCCCCCCCcCcccc
Confidence 356789999999997 41 123335789999999999999998 5679999999998665
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.01 E-value=1e-10 Score=100.85 Aligned_cols=53 Identities=25% Similarity=0.480 Sum_probs=44.0
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
...+.+.|+||++.|. |+ .++|||+||..||..|+.. ....||+||.++....
T Consensus 14 ~~~~~~~C~IC~~~~~~p~------~~~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 14 PLESKYECPICLMALREAV------QTPCGHRFCKACIIKSIRD----AGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEE------ECTTSCEEEHHHHHHHHHH----HCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcCChhhcCeE------ECCcCChhhHHHHHHHHhh----CCCCCCCCCCCcCHHh
Confidence 4456789999999998 53 6899999999999999984 2349999999988654
No 47
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=2.2e-10 Score=95.15 Aligned_cols=57 Identities=28% Similarity=0.567 Sum_probs=44.2
Q ss_pred CCCCCccccccccccc-ccccCcceeec-CCCcccHHHHHHHHHhc-CCCCCCCCcC--cCcc-ccCCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISI-CGHVFHELCLQQWFEYC-SSSKKCTCPV--CKQR-CSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llp-CGHsFC~~CL~~wle~~-~~~~s~~CP~--CR~~-~~~~~ 67 (466)
+....+.||||++.|. |+ +++ |||+||..||..||... ..++...||+ |+.. +....
T Consensus 3 ~~~~~~~CPI~~~~~~dPV------~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPV------KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEE------EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CCCcEeECcCcCchhcCCE------EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 3456789999999998 65 675 99999999999999842 1123579999 9877 55443
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.00 E-value=1.5e-10 Score=99.23 Aligned_cols=50 Identities=26% Similarity=0.731 Sum_probs=42.6
Q ss_pred CCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
+.+.||||++.|. |+ .++|||+||..||..|+.. ....||.||.++....
T Consensus 22 ~~~~C~IC~~~~~~p~------~~~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADPV------ETSCKHLFCRICILRCLKV----MGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSEE------ECTTSCEEEHHHHHHHHHH----TCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCcE------EcCCCCcccHHHHHHHHhH----CcCcCCCCCCCCCHhh
Confidence 3578999999998 54 6899999999999999984 3578999999988654
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=8e-11 Score=101.42 Aligned_cols=46 Identities=28% Similarity=0.595 Sum_probs=39.7
Q ss_pred CCccccccccccc-ccccCcceee-cCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 8 GKTICSICYEDLK-PIVEDLQVIS-ICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 8 ~eltCpICLe~f~-P~~~~~~~ll-pCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+.+.||||++.|. |+ ++ +|||+||..||..|+. ..||+||.++...
T Consensus 21 ~~~~C~IC~~~~~~pv------~~~~CgH~fC~~Ci~~~~~-------~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREPV------CLGGCEHIFCSNCVSDCIG-------TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSCB------CCCSSSCCBCTTTGGGGTT-------TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhCcc------EeCCCCCHHHHHHHHHHhc-------CCCcCCCCcCccc
Confidence 4689999999998 64 56 9999999999999965 7899999998644
No 50
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.95 E-value=5.3e-10 Score=95.22 Aligned_cols=53 Identities=23% Similarity=0.608 Sum_probs=41.9
Q ss_pred CCccccccccccccc-------------ccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 8 GKTICSICYEDLKPI-------------VEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 8 ~eltCpICLe~f~P~-------------~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
++..|+||++.|... .+.....++|||.||..||..|+. ...+||+||..+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-----~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-----TRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-----TCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-----cCCcCcCCCCccee
Confidence 456899999999721 112345689999999999999998 57899999998653
No 51
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.93 E-value=4.6e-10 Score=104.07 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=44.1
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
..-..+.||||++.|. |+ ++||||+||..||..|+.. +..+||+||.+++...
T Consensus 102 ~ip~~f~CPI~~elm~DPV------~~~~Ghtfer~~I~~~l~~----~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPC------ITPSGITYDRKDIEEHLQR----VGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEE------ECTTSCEEEHHHHHHHHHH----TCSBCTTTCCBCCGGG
T ss_pred CCcHhhcccCccccCCCCe------ECCCCCEECHHHHHHHHHh----CCCCCCCCcCCCChhh
Confidence 3456789999999998 65 7899999999999999984 2237999999987654
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.91 E-value=1.5e-10 Score=103.32 Aligned_cols=49 Identities=27% Similarity=0.611 Sum_probs=41.3
Q ss_pred CCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 6 KFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 6 ~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
..+.+.|+||++.|. |+ .++|||+||..||..|+.. +...||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~pv------~~~CgH~FC~~Ci~~~~~~----~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPF------QAQCGHRYCSFCLASILSS----GPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSEE------ECTTSCEEEHHHHHHHGGG----SCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCcE------ECCCCCccCHHHHHHHHhc----CCCCCCCCCCccc
Confidence 346789999999998 54 6899999999999999872 3468999999764
No 53
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.85 E-value=9.1e-10 Score=107.23 Aligned_cols=56 Identities=25% Similarity=0.491 Sum_probs=45.3
Q ss_pred CCCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcC--cCccccCCC
Q 012292 4 ENKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPV--CKQRCSSSN 67 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~--CR~~~~~~~ 67 (466)
+.....++||||++.|. |+ ..+.|||+||..||..||.. ++...||+ ||..+...+
T Consensus 176 ~~~~~el~CPIcl~~f~DPV-----ts~~CGHsFcR~cI~~~~~~---~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPL-----ISRKCNHVFDRDGIQNYLQG---YTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEE-----EESSSCCEEEHHHHHHHSTT---CSCEECSGGGCSCEECGGG
T ss_pred cCCceeeECcCccCcccCCe-----eeCCCCCcccHHHHHHHHHh---CCCCCCCcccccCcCchhh
Confidence 44567899999999999 75 23599999999999999872 24578999 999887554
No 54
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.81 E-value=1.8e-09 Score=98.72 Aligned_cols=53 Identities=25% Similarity=0.480 Sum_probs=44.3
Q ss_pred CCCCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
...+.+.||||++.|. |+ .++|||+||..||..|+.. ....||.||.++....
T Consensus 14 ~~~~~~~C~IC~~~~~~pv------~~~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 14 PLESKYECPICLMALREAV------QTPCGHRFCKACIIKSIRD----AGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEE------ECTTSCEEEHHHHHHHHHH----HCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCChhhcCcE------ECCCCCHHHHHHHHHHHHh----CCCCCCCCccCcchhh
Confidence 4456789999999998 54 6899999999999999983 2359999999988654
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.81 E-value=1.5e-09 Score=94.12 Aligned_cols=56 Identities=30% Similarity=0.715 Sum_probs=44.8
Q ss_pred CCCccccccccccc-cc-ccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 7 FGKTICSICYEDLK-PI-VEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 7 ~~eltCpICLe~f~-P~-~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.+...|+||++.|. +. ..+....++|||+||..||.+|+. ....||+||..+...+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-----NANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-----HCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-----cCCCCCCCCCcCChhc
Confidence 45678999999997 31 123335789999999999999999 4679999999987654
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.80 E-value=8e-10 Score=87.66 Aligned_cols=44 Identities=27% Similarity=0.662 Sum_probs=37.3
Q ss_pred CcccccccccccccccCcceeecCCCc-ccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHV-FHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHs-FC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+..|+||++.+..+ .++||||+ ||..|+..| ..||+||.++...
T Consensus 24 ~~~C~iC~~~~~~~-----~~~pCgH~~~C~~C~~~~---------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNIAI-----VFVPCGHLVTCKQCAEAV---------DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBCCE-----EEETTCCBCCCHHHHTTC---------SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCCE-----EEcCCCChhHHHHhhhcC---------ccCCCcCcCccCc
Confidence 57899999999832 37899999 999999887 6799999988743
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.79 E-value=2.5e-09 Score=109.90 Aligned_cols=50 Identities=32% Similarity=0.763 Sum_probs=42.0
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
...|+||++.+..+ ..+||||+||..|+..|+.. ....||.||.++....
T Consensus 332 ~~~C~ICle~~~~p-----v~lpCGH~FC~~Ci~~wl~~----~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDV-----KIEPCGHLMCTSCLTSWQES----EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCE-----EEETTCCEECHHHHHHHHHH----TCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCe-----EEeCCCChhhHHHHHHHHhc----CCCCCCCCCCccCCce
Confidence 47999999999732 47899999999999999883 4678999999987553
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.78 E-value=2.4e-09 Score=82.62 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=40.1
Q ss_pred CCCcccccccccccccccCcceee--cCCCc-ccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 7 FGKTICSICYEDLKPIVEDLQVIS--ICGHV-FHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~ll--pCGHs-FC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
.++..|+||++.+..+ .++ ||||. ||..|+..|+. ....||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~~-----~~~~~pCgH~~~C~~C~~~~~~-----~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG-----CIVHGKTGHLMACFTCAKKLKK-----RNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCE-----EEEETTEEEEEECHHHHHHHHH-----TTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCE-----EEECCCCCChhhHHHHHHHHHH-----cCCcCCCcCcchhc
Confidence 3566899999998732 245 99999 89999999988 56789999998863
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.77 E-value=3e-09 Score=81.86 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=39.7
Q ss_pred CCCcccccccccccccccCcceee--cCCCc-ccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 7 FGKTICSICYEDLKPIVEDLQVIS--ICGHV-FHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~ll--pCGHs-FC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
.....|+||++.+..+ .++ ||||. ||..|+..|+. ....||+||.++..
T Consensus 5 ~~~~~C~IC~~~~~~~-----~~~~~pCgH~~~C~~C~~~~~~-----~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-----NIIHGRTGHLVTCFHCARRLKK-----AGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCE-----EEEETTEEEEEECHHHHHHHHH-----TTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCe-----EEEecCCCCHhHHHHHHHHHHH-----hCCcCCCcCchhhc
Confidence 3456899999988632 245 99998 99999999987 45789999998863
No 60
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.76 E-value=1e-09 Score=95.05 Aligned_cols=53 Identities=23% Similarity=0.608 Sum_probs=0.9
Q ss_pred CCccccccccccccc-------------ccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 8 GKTICSICYEDLKPI-------------VEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 8 ~eltCpICLe~f~P~-------------~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
.+-.|+||++.|... .+.....++|||.||..||..|+. ...+||+||..+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-----~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-----TRQVCPLDNREWEF 112 (117)
T ss_dssp CC---------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-----cCCcCCCCCCeeee
Confidence 346899999999721 111233468999999999999998 56899999998753
No 61
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.4e-08 Score=82.05 Aligned_cols=58 Identities=28% Similarity=0.583 Sum_probs=44.6
Q ss_pred CCCCCCcccccccccccccccCcceeecCC-----CcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISICG-----HVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpCG-----HsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
....++..|.||++.|.+. . ..++||+ |.||..||.+|+... +...||+||..+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~--~-~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDE--S-PLITPCHCTGSLHFVHQACLQQWIKSS---DTRCCELCKYEFIMET 72 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSS--S-CEECSSSCCSSSCCEETTHHHHHHHHH---CCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCCeEcCccccCC--C-eeEeccccCCcCCeeCHHHHHHHHhhC---CCCCCCCCCCeeecCc
Confidence 3445677999999998631 2 2368996 999999999999842 3469999999987553
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=4.2e-09 Score=83.59 Aligned_cols=44 Identities=27% Similarity=0.668 Sum_probs=36.1
Q ss_pred CcccccccccccccccCcceeecCCCc-ccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHV-FHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHs-FC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
...|+||++.+..+ .++||||. ||..|+.. ...||+||.++...
T Consensus 25 ~~~C~IC~~~~~~~-----~~~pCgH~~~C~~C~~~---------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI-----VFVPCGHLVTCKQCAEA---------VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB-----CCSSSCCCCBCHHHHHH---------CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE-----EEecCCCHHHHHHHhhC---------CCCCccCCceecCc
Confidence 46899999999832 37899999 99999964 27899999998754
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=7.4e-09 Score=85.56 Aligned_cols=53 Identities=26% Similarity=0.683 Sum_probs=39.4
Q ss_pred CCCccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCC-C--CCCCCcC--cCcc
Q 012292 7 FGKTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSS-S--KKCTCPV--CKQR 62 (466)
Q Consensus 7 ~~eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~-~--~s~~CP~--CR~~ 62 (466)
....+|+||++.+. |. ...+.+|||.||..|+.+|+..... + ....||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~---~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQ---MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGG---EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCccccccc---ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35789999999997 32 2223479999999999999874311 1 2468999 9988
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.57 E-value=1.3e-08 Score=81.83 Aligned_cols=44 Identities=32% Similarity=0.746 Sum_probs=36.9
Q ss_pred CcccccccccccccccCcceeecCCCc-ccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHV-FHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHs-FC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+..|+||++.+..+ .++||||. ||..|+..| ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~~~-----v~~pCgH~~~C~~C~~~~---------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINS-----TFCPCGHTVCCESCAAQL---------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCE-----EEETTCBCCBCHHHHTTC---------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcE-----EEECCCCHHHHHHHHHhc---------CcCCCCCchhhCe
Confidence 46899999998732 47899999 999999876 3799999998754
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=5.9e-08 Score=75.81 Aligned_cols=46 Identities=24% Similarity=0.530 Sum_probs=37.7
Q ss_pred CCCcccccccccccccccCcceeecCCCc-ccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHV-FHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHs-FC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
.+...|+||++.+..+ .++||||. ||..|+.. ...||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~-----v~~pCgH~~~C~~C~~~---------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNW-----VLLPCRHTCLCDGCVKY---------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCC-----EETTTTBCCSCTTHHHH---------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCE-----EEECCCChhhhHHHHhc---------CCCCCCCCcchhce
Confidence 3468999999998733 47899999 99999884 26899999988754
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.44 E-value=6.4e-08 Score=74.11 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=40.5
Q ss_pred Cccccccccccc-ccccCcceee-cCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 9 KTICSICYEDLK-PIVEDLQVIS-ICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~ll-pCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.+.||||++.|. |+ ++ +|||+|+..||..|+.. ..+||+++.++...+
T Consensus 3 ~~~CpIs~~~m~dPV------~~~~sG~~yer~~I~~~l~~-----~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRPV------LSPKSRTIFEKSLLEQYVKD-----TGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSEE------EETTTTEEEEHHHHHHHHHH-----HSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCCE------EeCCCCcEEcHHHHHHHHHh-----CCCCcCCcCCCChhh
Confidence 368999999998 54 66 89999999999999983 456999999987654
No 67
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=1.3e-07 Score=75.17 Aligned_cols=51 Identities=25% Similarity=0.564 Sum_probs=40.1
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
...|.||++.+.+. . ....|+|.||..||.+||... ...+||.||..+...
T Consensus 15 i~~C~IC~~~i~~g-~---~C~~C~h~fH~~Ci~kWl~~~---~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQG-Q---SCETCGIRMHLPCVAKYFQSN---AEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSS-E---ECSSSCCEECHHHHHHHSTTC---SSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccC-C---ccCCCCchhhHHHHHHHHHhc---CCCCCCCCcCcCCCC
Confidence 47899999999852 1 233899999999999999831 238999999887644
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.16 E-value=6.5e-07 Score=90.09 Aligned_cols=58 Identities=26% Similarity=0.572 Sum_probs=41.5
Q ss_pred CCCcccccccccccccccCcc---e-eecCCCcccHHHHHHHHHhcCCCC------CCCCcCcCccccC
Q 012292 7 FGKTICSICYEDLKPIVEDLQ---V-ISICGHVFHELCLQQWFEYCSSSK------KCTCPVCKQRCSS 65 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~---~-llpCGHsFC~~CL~~wle~~~~~~------s~~CP~CR~~~~~ 65 (466)
.....|+||+..+.+. ...+ + ...|||.||..||..|+...+.++ ...||.||.+++.
T Consensus 306 e~~~ECaICys~~l~~-g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDG-GEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTT-CCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCC-CCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3566899999998741 1111 1 247999999999999998543211 2579999998874
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.12 E-value=2.5e-06 Score=64.97 Aligned_cols=52 Identities=25% Similarity=0.682 Sum_probs=39.2
Q ss_pred CCCCcccccccccccccccCcceeecCC--C---cccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICG--H---VFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCG--H---sFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
..+...|.||++...+ . .+.||. | .||..||.+|+... ++..||+|+..+..
T Consensus 3 ~~~~~~CrIC~~~~~~---~--l~~PC~C~gs~~~~H~~Cl~~W~~~~---~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELGN---E--RFRACGCTGELENVHRSCLSTWLTIS---RNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECSC---C--CCCSCCCSSGGGSCCHHHHHHHHHHH---TCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCCCC---c--eecCcCCCCchhhhHHHHHHHHHHhC---CCCccCCCCCeeec
Confidence 3456789999987542 1 257865 4 89999999999842 46899999998763
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.01 E-value=3.9e-06 Score=69.88 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=39.3
Q ss_pred ccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.|++|--++.- -..++||.|+||+.|+..|... +...||.|+.++..-.
T Consensus 3 fC~~C~~Pi~i----ygRmIPCkHvFCydCa~~~~~~----~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKV----YGRMIPCKHVFCYDCAILHEKK----GDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSE----EEEEETTCCEEEHHHHHHHHHT----TCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEE----EeeeccccccHHHHHHHHHHhc----cCCCCcCcCCeeeeeE
Confidence 68999888761 1258999999999999999862 5689999999987443
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.99 E-value=0.00012 Score=74.41 Aligned_cols=31 Identities=26% Similarity=0.683 Sum_probs=26.4
Q ss_pred ceeecCCCc-ccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 27 QVISICGHV-FHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 27 ~~llpCGHs-FC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+.++||||+ ||..|+..| ..||.||.++...
T Consensus 308 ~v~lpCgH~~fC~~C~~~~---------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 308 VVFIPCGHLVVCQECAPSL---------RKCPICRGIIKGT 339 (345)
T ss_dssp EEEETTCCEEECTTTGGGC---------SBCTTTCCBCCEE
T ss_pred eEEcCCCChhHhHHHHhcC---------CcCCCCCCCccCe
Confidence 457899999 999999877 5799999998743
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.87 E-value=0.00059 Score=65.77 Aligned_cols=51 Identities=25% Similarity=0.560 Sum_probs=39.6
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
...|.||.+.+.+. . ....|+|.||..|+..|+.. .+...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g---~-~C~~C~~~~H~~C~~~~~~~---~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---Q-SCETCGIRMHLPCVAKYFQS---NAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---E-ECSSSCCEECHHHHHHHTTT---CSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---c-ccCccChHHHHHHHHHHHHh---CCCCCCCCCCCCCCCC
Confidence 56899999999842 1 23349999999999999873 2357999999987644
No 73
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.17 E-value=0.022 Score=66.42 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=11.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 012292 96 VKILEVKVSRLHTVLESQGKEIKEINEELCLC 127 (466)
Q Consensus 96 l~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~ 127 (466)
+..++..+..+...+......+..+..+...+
T Consensus 866 L~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 74
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.11 E-value=0.84 Score=42.07 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 241 ARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 241 ~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
......+..+...+..+..++..+...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (284)
T 1c1g_A 177 ERAEERAELSEGKCAELEEEIKTVTNNL 204 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.03 E-value=0.0028 Score=52.23 Aligned_cols=34 Identities=21% Similarity=0.560 Sum_probs=25.8
Q ss_pred CCccccccccc-ccccccCcceeecCCCcccHHHHHHH
Q 012292 8 GKTICSICYED-LKPIVEDLQVISICGHVFHELCLQQW 44 (466)
Q Consensus 8 ~eltCpICLe~-f~P~~~~~~~llpCGHsFC~~CL~~w 44 (466)
++++|+||.+. +.++ +...++|+|+||..|+..|
T Consensus 2 ee~~C~~C~~~~~~~a---v~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA---VKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBC---CEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCc---eEECCcCChHHhHHHCHHH
Confidence 57899999976 4432 1123899999999999984
No 76
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.93 E-value=0.03 Score=65.28 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 95 EVKILEVKVSRLHTVLESQGKEIKEINEELCLCKER 130 (466)
Q Consensus 95 El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQ 130 (466)
++..++..+..+...+......+..++.++..+.++
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e 893 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE 893 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555444433
No 77
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.87 E-value=0.74 Score=58.55 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 209 KDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 209 ~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
++....|...+..++..|++...+.+.|+.+......+|++|..=|..|-.+-..|....+.
T Consensus 2034 ~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2034 VATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 33444445555555555555555555555555555566666655555555555444444444
No 78
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.69 E-value=1.6 Score=41.88 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINK 256 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~ 256 (466)
+.+++.+........+++.+++.+..........+.....++..
T Consensus 100 e~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~ 143 (256)
T 3na7_A 100 DIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALE 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555544444444444433
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.54 E-value=0.2 Score=53.26 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 215 LRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 215 Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
++++....++.|+++.++++.+++.....+++++++..|++.+++++++|+..+..
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344444556666666666666666666667777777777777777777666654
No 80
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.34 E-value=2 Score=54.74 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVSK 283 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~ 283 (466)
....+..++...+..++++++++..++.....++.+++++..|...|+.+++..+..|+.++ .++..|-.+|
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~-~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSI-ALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhcc
Confidence 34444455555555666666667777777777777777777777777777777777766433 3444444444
No 81
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.09 E-value=0.33 Score=56.05 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 212 IDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 212 ~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
++.|.+++....+.++.+..+++++.. .+..++..+.+++.+|++++.+|+..+..
T Consensus 993 ~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 993 IAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555554444442 22355555556666666666666543333
No 82
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.67 E-value=3.9 Score=36.94 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Q 012292 221 IRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKVS 282 (466)
Q Consensus 221 ~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~ 282 (466)
-+.....+|..++..|.-+..+++..+.++..+...|.+++-.|++.-.+.+=+++=.|+.-
T Consensus 87 q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKal 148 (168)
T 3o0z_A 87 HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSL 148 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34445566777888888888888888888888888888888888888877776555555543
No 83
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.55 E-value=5.3 Score=38.13 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=8.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 012292 148 VEQLLHSKSQELDKVTLECLK 168 (466)
Q Consensus 148 LeqLL~~q~eEVeklkeE~~r 168 (466)
++..+.....++..+...+.+
T Consensus 58 ~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 58 LKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444333333
No 84
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.41 E-value=0.041 Score=45.15 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=39.5
Q ss_pred CCCCcccccccccccccccCcceeecCC-CcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICG-HVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCG-HsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
-.+-..|-.|.-..+. ++.|. |.+|..||...+. .+..||+|..++...-
T Consensus 25 ~~G~~nCKsCWf~~k~-------LV~C~dHYLCl~CLtlmL~-----~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG-------LVECNNHYLCLNCLTLLLS-----VSNRCPICKMPLPTKL 75 (99)
T ss_dssp CSCCCCCCSSCSCCSS-------EEECSSCEEEHHHHHHTCS-----SSSEETTTTEECCCCS
T ss_pred ccCcccChhhccccCC-------eeeecchhhHHHHHHHHHh-----hccCCcccCCcCCcce
Confidence 3455788889877653 45676 9999999998877 7899999999987663
No 85
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=92.87 E-value=1 Score=35.75 Aligned_cols=63 Identities=10% Similarity=0.248 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEV 275 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~ 275 (466)
+.|++.|..++...+....+.+++..........+.++..++..|..+++.|+..|+.....+
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999988888889999999999999999999999998855443
No 86
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.26 E-value=2.4 Score=48.97 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 012292 101 VKVSRLHTVLESQGKEIKEIN 121 (466)
Q Consensus 101 ~kl~~L~~~Le~~~~~lk~L~ 121 (466)
.++..+...++...++...+.
T Consensus 928 ~kl~eLq~rL~~~e~~n~~L~ 948 (1080)
T 2dfs_A 928 NKIMQLQRKIDEQNKEYKSLL 948 (1080)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444443433333333333
No 87
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.05 E-value=1.3 Score=36.61 Aligned_cols=63 Identities=11% Similarity=0.215 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDN 273 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~n 273 (466)
+.|++++.|..++-..++...+.+++......+.....++..+|..|..+++.|+..|+....
T Consensus 3 ~MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 3 HMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998888888888888888777788888888888888888888888876443
No 88
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.69 E-value=4.6 Score=42.68 Aligned_cols=15 Identities=13% Similarity=0.126 Sum_probs=10.0
Q ss_pred CCcccHHHHHHHHHh
Q 012292 33 GHVFHELCLQQWFEY 47 (466)
Q Consensus 33 GHsFC~~CL~~wle~ 47 (466)
|-.|...|+..|+..
T Consensus 354 ~N~~~~~~~~~~~~~ 368 (597)
T 3oja_B 354 HNDWDCNSLRALFRN 368 (597)
T ss_dssp SSCEEHHHHHHHTTT
T ss_pred CCCCCChhHHHHHHH
Confidence 334566788888764
No 89
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.60 E-value=2.1 Score=35.30 Aligned_cols=63 Identities=11% Similarity=0.261 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDN 273 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~n 273 (466)
..+++++.|..++-..++...+.+++......+.....++..+|..|+.+++.|+..++....
T Consensus 3 ~md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e 65 (101)
T 3u59_A 3 SMEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSE 65 (101)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999998888888888888889999999999888888876443
No 90
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.36 E-value=0.2 Score=50.92 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=39.5
Q ss_pred Cccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 9 KTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.+.||+-+..+. |+ ....|.|.-|.. +..|+..........||+|...+...+
T Consensus 249 SL~CPlS~~ri~~Pv-----Rg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 249 SLQCPISYTRMKYPS-----KSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp ESBCTTTSSBCSSEE-----EETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred eecCCCccccccccC-----cCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 478999999998 76 567899996654 334554333357899999999888776
No 91
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.47 E-value=1.1 Score=36.39 Aligned_cols=56 Identities=23% Similarity=0.506 Sum_probs=38.7
Q ss_pred CCCCCccccccccccc-ccccCcc-eeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 5 NKFGKTICSICYEDLK-PIVEDLQ-VISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 5 ~~~~eltCpICLe~f~-P~~~~~~-~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.......|.||-+.+- .+...++ ..-.|+--.|..|+.--.. .++..||.|+.++.
T Consensus 12 ~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk----eG~q~CpqCktrYk 69 (93)
T 1weo_A 12 KNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR----EGTQNCPQCKTRYK 69 (93)
T ss_dssp SCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH----TSCSSCTTTCCCCC
T ss_pred cccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh----ccCccccccCCccc
Confidence 3345679999999976 2222222 1245777889999985433 37899999999886
No 92
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.47 E-value=3.8 Score=35.81 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=19.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 230 MAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 230 ~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
...+..|..+...+.-+++.+..++++|++++.+|++.+-..
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455555555555555555555444443
No 93
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.16 E-value=0.58 Score=37.26 Aligned_cols=53 Identities=25% Similarity=0.400 Sum_probs=35.2
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVC 59 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~C 59 (466)
....+.|.+|.+.+.++ ..+++-..=+|-||..|-...++....+.-..||.=
T Consensus 12 ~~a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp SCCSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCCeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 34568999999999743 222222234699999999998885544445556643
No 94
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.13 E-value=0.54 Score=37.76 Aligned_cols=56 Identities=21% Similarity=0.523 Sum_probs=35.5
Q ss_pred CCCCCCCcccccccccccccccCcceeecCCCcccHHHHHHH--HH---------hcCCCCCCCCcCcCc
Q 012292 3 IENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQW--FE---------YCSSSKKCTCPVCKQ 61 (466)
Q Consensus 3 ~~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~w--le---------~~~~~~s~~CP~CR~ 61 (466)
.+....+..|+||-..-.. .+.-.-.|+-+||..||.+. +. .........||.|..
T Consensus 9 ~e~~~~D~~C~VC~~~t~~---~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 9 REPVVNDEMCDVCEVWTAE---SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCCCCSCCCTTTCCCCSS---CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred ccCCCCCcccCcccccccc---ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 3455677899999744321 11113469999999999985 11 112235688999943
No 95
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.02 E-value=5.6 Score=34.72 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 218 SLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 218 ~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
.+....+....|+.....+......+.++++++..++..|..++..|+..++
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344333333444444444444555555555555555554444
No 96
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.21 E-value=0.26 Score=49.92 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=39.4
Q ss_pred Cccccccccccc-ccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 9 KTICSICYEDLK-PIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 9 eltCpICLe~f~-P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.+.|||-+..+. |+ ....|.|.-|.. +..|+..........||+|.+.+...+
T Consensus 215 SL~CPlS~~ri~~P~-----Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPC-----RAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp ESBCTTTCSBCSSEE-----EETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeeCCCccceeccCC-----cCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 478999999998 76 467899996654 334554333346899999999988776
No 97
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=86.04 E-value=3.8 Score=31.76 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=32.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 231 AKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 231 ~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
.+++.|.....+....+..++.||.+|+..++.|+..|+.
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666688999999999999999999998875
No 98
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=83.68 E-value=0.62 Score=35.63 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=36.8
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
......|.||.+. ..+...-.|...||..|+...+...+ .+...||.|.....
T Consensus 9 ~~~~~~C~vC~~~-----~~ll~Cd~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 9 LAPGARCGVCGDG-----TDVLRCTHCAAAFHWRCHFPAGTSRP-GTGLRCRSCSGDVT 61 (66)
T ss_dssp CCTTCCCTTTSCC-----TTCEECSSSCCEECHHHHCTTTCCCC-SSSCCCTTTTTCCC
T ss_pred CCCCCCcCCCCCC-----CeEEECCCCCCceecccCCCccCcCC-CCCEECccccCCCc
Confidence 3445679999753 23344456899999999987666433 35789999976543
No 99
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.55 E-value=0.18 Score=37.98 Aligned_cols=59 Identities=20% Similarity=0.379 Sum_probs=36.9
Q ss_pred CCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccc
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~ 63 (466)
+++.+...|+||...+.+. ...+..-.|..-||..|+.-............||.|+..-
T Consensus 1 ~s~~e~~~C~~C~~~~~~~-~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 1 GSSGSSGQCGACGESYAAD-EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CCCSSCCCCSSSCCCCCSS-SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCCCccCCC-CCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 3566788999999888532 2222234688899999975421111112468899997643
No 100
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=82.67 E-value=29 Score=31.82 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012292 94 AEVKILEVKVSRLHTVLESQGKEIKEIN 121 (466)
Q Consensus 94 ~El~rLe~kl~~L~~~Le~~~~~lk~L~ 121 (466)
.++..++.....+...+.....++..+.
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFq 37 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQ 37 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 101
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=82.23 E-value=0.69 Score=52.41 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=42.3
Q ss_pred CCCCccccccccccc-ccccCcceeecCC-CcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 6 KFGKTICSICYEDLK-PIVEDLQVISICG-HVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 6 ~~~eltCpICLe~f~-P~~~~~~~llpCG-HsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.=++..|||-++.|. |+ ++|.| |+|=..+|.+|+. ...+||+=|.+++...
T Consensus 888 iP~~F~cPIs~~lM~DPV------ilpsG~~TydR~~I~~wl~-----~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPV------ILPASKMNIDRSTIKAHLL-----SDSTDPFNRMPLKLED 940 (968)
T ss_dssp SCGGGBCTTTCSBCSSEE------ECTTTCCEEEHHHHHHHHT-----TCCBCTTTCCBCCGGG
T ss_pred CcHHhCCcchhhHHhCCe------EcCCCCEEECHHHHHHHHh-----cCCCCCCCCCCCCccc
Confidence 345788999999998 65 88998 6999999999998 4578999888887543
No 102
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=81.99 E-value=0.14 Score=38.92 Aligned_cols=61 Identities=21% Similarity=0.531 Sum_probs=40.6
Q ss_pred CCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHh--cCCCCCCCCcCcCcccc
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEY--CSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~--~~~~~s~~CP~CR~~~~ 64 (466)
++...+..|.||..........+...-.|...||..|+..-+.. -+..+...||.|.....
T Consensus 1 g~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 1 GSSGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 35667889999998754222344555678899999998753321 01236789999976543
No 103
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=81.62 E-value=8.7 Score=27.66 Aligned_cols=44 Identities=20% Similarity=0.461 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
.|++|..+++.|++|-.-++++|+.-...+.+|+.+-..++..+
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 58888888888888888888888888888888877766665444
No 104
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=79.95 E-value=21 Score=30.23 Aligned_cols=55 Identities=24% Similarity=0.260 Sum_probs=25.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 207 NNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQEL 264 (466)
Q Consensus 207 ~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eL 264 (466)
+++.++.+|+.+|...+..- ..+++.|.-+...++.+|+++..++++|+...+.|
T Consensus 50 TCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 50 TANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 57777777777553332221 22333444444444444444444444444444433
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.46 E-value=59 Score=33.27 Aligned_cols=48 Identities=21% Similarity=0.138 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 224 KNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 224 k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
..+.++....+...++......+.++.+++.+++++.+.++.++++++
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 421 EMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 334444444444444444444555555555555555555555555543
No 106
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=79.39 E-value=29 Score=29.61 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=35.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETA 267 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~ 267 (466)
..+..+.|...-+.+...+.++..+.+........+..+-.++..++..|++.+.+++..
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555566666666555555555555566666666677777777666543
No 107
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.77 E-value=0.36 Score=36.22 Aligned_cols=56 Identities=18% Similarity=0.446 Sum_probs=37.6
Q ss_pred CCCCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccc
Q 012292 2 GIENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 2 ~~~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~ 63 (466)
|.++...+..|.||.+.- .+...-.|...||..|+..-+...+ .+...||.|+...
T Consensus 2 p~~~d~~~~~C~vC~~~g-----~ll~Cd~C~~~fH~~Cl~ppl~~~p-~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 2 PLGSDHHMEFCRVCKDGG-----ELLCCDTCPSSYHIHCLNPPLPEIP-NGEWLCPRCTCPA 57 (61)
T ss_dssp TTCSCSSCSSCTTTCCCS-----SCBCCSSSCCCBCSSSSSSCCSSCC-SSCCCCTTTTTTC
T ss_pred CccccCCCCcCCCCCCCC-----CEEEcCCCCHHHcccccCCCcCcCC-CCccCChhhcCch
Confidence 455666788999998631 2233446888999999875443322 3578899997643
No 108
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=77.88 E-value=1 Score=36.38 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=30.8
Q ss_pred CCCCCCCcccccccccccccccCcceeecCCCcccHHHHHH
Q 012292 3 IENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQ 43 (466)
Q Consensus 3 ~~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~ 43 (466)
++...+...|.+|...|... ...+..-.||++||..|...
T Consensus 3 ~~~~~~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 3 SGSSGMESRCYGCAVKFTLF-KKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCCCCSBCTTTCCBCCSS-SCEEECSSSCCEEETTTSCE
T ss_pred CCCCCcCCCCcCcCCcccCc-cccccCCCCCCEEChhHcCC
Confidence 45566777999999999742 34555678999999999764
No 109
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=77.76 E-value=19 Score=28.60 Aligned_cols=64 Identities=9% Similarity=0.160 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012292 210 DTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDN 273 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~n 273 (466)
+.+..|-+-+.......-+|..+++.|..|..+++-.+|....+++.++++..++-.+|+.+-+
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~ 69 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555545555667778999999999999999999999999999999999998888876443
No 110
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.58 E-value=43 Score=30.68 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 012292 250 AKEKINKLKTRVQELETAVELKD 272 (466)
Q Consensus 250 ~~~ei~~Lk~~v~eLqk~le~~~ 272 (466)
+..++.+|+..+.+|+..|.++.
T Consensus 159 l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 159 LLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555533
No 111
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=77.20 E-value=8.3 Score=41.34 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=9.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVL 276 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l 276 (466)
..++...|...-....+..+.|..++........++...-++.+.|-.+|+.++...+.+++....+++
T Consensus 389 ~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 389 LQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333334444555444445555555555566666666777777777776655444433
No 112
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=76.23 E-value=34 Score=28.86 Aligned_cols=55 Identities=33% Similarity=0.442 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHH
Q 012292 221 IRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL--KDNEVLRA 278 (466)
Q Consensus 221 ~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~--~~ne~l~~ 278 (466)
.-|.....|+. .|.++.....++++++..||+.|+.++++....++. ++|+.+..
T Consensus 50 TCNqTV~tL~~---SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 50 TANHTVMALMA---SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 44445444554 556666666778889999999999999988888888 56655543
No 113
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=75.75 E-value=5 Score=33.14 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=0.0
Q ss_pred CcCcCccccCCCCCcchhhhhccCCCCCCCCCChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 56 CPVCKQRCSSSNSIGDQIDLVISQKPKDPEVEDPEVSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIK 132 (466)
Q Consensus 56 CP~CR~~~~~~~~l~~l~~~l~~~~~~~~e~~~~e~l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlk 132 (466)
||+|..++.... ....+......+..+...+......+..+..++..+..++.
T Consensus 50 CPvCgs~l~~~~------------------------~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 50 CPVCGRELTDEH------------------------REELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp CTTTCCEECHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 114
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=73.88 E-value=0.37 Score=41.36 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=32.2
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
....|..|...|.. ....+..-.||.+||..|...... ....|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~-~~RkHHCR~CG~ifC~~Cs~~~~~-----~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFAN-TARKQTCLDCKKNFCMTCSSQVGN-----GPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSS-GGGCEECTTTCCEECGGGEEC---------CCEEHHHHH
T ss_pred ccCcccCcCCcccc-ccccccCCCCCCeeCHHHhCCCCC-----CceECHHHHH
Confidence 34689999999984 235556779999999999765433 3566777743
No 115
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=72.55 E-value=54 Score=29.45 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhh
Q 012292 218 SLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLK----TRVQELETAVEL 270 (466)
Q Consensus 218 ~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk----~~v~eLqk~le~ 270 (466)
.+..+....+.++....+..-+...+..++..+.++...+. -+++-||..++-
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eq 154 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQ 154 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444455555555555555 455556655554
No 116
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=72.25 E-value=28 Score=25.93 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=38.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012292 205 GANNKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLK 258 (466)
Q Consensus 205 ~~~~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk 258 (466)
+...-...-.++++++.+.....+||+--+.|..|...+.++++++..|...|+
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 344445555678888888888888887666666666666677777777776664
No 117
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=71.97 E-value=0.83 Score=41.06 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=33.9
Q ss_pred CCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcc
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~ 62 (466)
....+...| ||....++. ......-.|...||..|+.-............||.|+..
T Consensus 3 ~~~~~~~~C-~C~~~~~~~-~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 3 LGSDTKLYC-ICKTPEDES-KFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp ----CCEET-TTTEECCTT-SCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCCCcEe-eCCCCCCCC-CCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 344567889 999876532 222333468889999998532111112357899999764
No 118
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=71.86 E-value=1.8 Score=32.29 Aligned_cols=51 Identities=22% Similarity=0.606 Sum_probs=34.7
Q ss_pred CCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
....+..|.||...- .+...-.|...||..|+..-+...+ .+...||.|..
T Consensus 7 ~~~~~~~C~vC~~~g-----~ll~CD~C~~~fH~~Cl~p~l~~~p-~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGG-----EIILCDTCPRAYHMVCLDPDMEKAP-EGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCCS-----SEEECSSSSCEEEHHHHCTTCCSCC-CSSCCCTTGGG
T ss_pred cCCCCCCCccCCCCC-----cEEECCCCChhhhhhccCCCCCCCC-CCceECccccc
Confidence 445567899998631 2233446888999999986443222 36789999975
No 119
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=71.67 E-value=26 Score=25.46 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 212 IDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRV 261 (466)
Q Consensus 212 ~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v 261 (466)
+..+...+...+..+..+....+.+......+...++++..+|.+++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444443
No 120
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=71.64 E-value=1.4 Score=37.85 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=26.3
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHH
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQ 43 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~ 43 (466)
...|.+|...|.. ....+..-.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~-~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSV-TVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCS-SSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCcccc-ccccccCCCCCeEEChHHhCC
Confidence 3579999999974 235556678999999999654
No 121
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.52 E-value=49 Score=34.88 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HH----------------HHHHHHHHHHHhh
Q 012292 210 DTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKIN-KL----------------KTRVQELETAVEL 270 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~-~L----------------k~~v~eLqk~le~ 270 (466)
+..+.|++.+..++.........+..|+..+.....++++++.-|. +| .+.++.+||.|+.
T Consensus 110 E~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQ 187 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQ 187 (562)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHH
Confidence 3445566666666665555556666777777776677777766665 22 4667888888887
No 122
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=70.62 E-value=61 Score=33.00 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 236 LGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 236 L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
|+++.....+++++++.||++|..+++++...++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555554443
No 123
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=69.93 E-value=32 Score=28.76 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKAR 242 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~ 242 (466)
.++.|+..|....+.+...+..|+.|+++..+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 124
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=69.29 E-value=15 Score=26.53 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 227 TELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQEL 264 (466)
Q Consensus 227 eeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eL 264 (466)
.+|......|...-.++...|..+..+|..|++.|..|
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666677777777788889999999999888766
No 125
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=68.11 E-value=37 Score=28.08 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=32.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012292 227 TELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKD 272 (466)
Q Consensus 227 eeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ 272 (466)
+++..-.-++.|+-....++++..+-.+..|+.++..|+..|..++
T Consensus 40 Ee~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 40 LELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555557788888888889999999998888865
No 126
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=67.81 E-value=13 Score=25.78 Aligned_cols=26 Identities=8% Similarity=0.367 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+++.+.+.||.+.++++.+||+.+..
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444
No 127
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=67.78 E-value=10 Score=26.32 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 245 EKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
+++++.+++|++|+.++.+|+...
T Consensus 16 rEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 16 REITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456668888999999999998764
No 128
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=67.77 E-value=1.1 Score=34.77 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=36.0
Q ss_pred CCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
+..+...|+||...... ...+..-.|...||..|+.--.... ......||.|+..+.
T Consensus 14 ~~~~~~~C~~C~~~~~~--~~mi~CD~C~~wfH~~Cv~~~~~~~-~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDG--SPMIGCDDCDDWYHWPCVGIMAAPP-EEMQWFCPKCANKIK 70 (75)
T ss_dssp SSCEEECBTTTTBCCSS--CCEEECSSSSSEEEHHHHTCSSCCC-SSSCCCCTTTHHHHC
T ss_pred cCCCCcCCCCCCCCCCC--CCEEEcCCCCcccccccCCCCccCC-CCCCEEChhccCchh
Confidence 33455679999877542 1222334588899999987533211 125688999987654
No 129
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=67.52 E-value=2.5 Score=33.37 Aligned_cols=35 Identities=23% Similarity=0.530 Sum_probs=26.9
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHH
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQ 43 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~ 43 (466)
+...|.+|...|.. ....+..-.||++||..|...
T Consensus 18 ~~~~C~~C~~~Fs~-~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSI-SRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBT-TBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccC-ccccccCCCCCCEEChHHhCC
Confidence 34579999999984 235556678999999999654
No 130
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.32 E-value=4.9 Score=31.35 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=34.4
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
......| ||-..+++.. ..+..-.|..-||..|+.--...........||.|+....
T Consensus 9 ~~~~~~C-~C~~~~d~~~-~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNH-FMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCCS-TTSCSCCSSS-CEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cCCccEE-EcCCccCCCC-ceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 4455667 9988875321 2222335888999999863222111124689999987654
No 131
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=66.96 E-value=35 Score=26.95 Aligned_cols=47 Identities=32% Similarity=0.442 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRAL 279 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l 279 (466)
...+|.-+++.+..+...+-++| ...|+.+..|+..|+.++.| +++|
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKL-------KsTK~El~~Lq~qLe~kd~e-i~rL 73 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKL-------KATKAEVAQLQEQVALKDAE-IERL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHhhHHH-HHHH
Confidence 34445566666666666555555 44556666666666666665 3444
No 132
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=66.38 E-value=1.2 Score=45.42 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCC--CCCCCCcCcCccc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSS--SKKCTCPVCKQRC 63 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~--~~s~~CP~CR~~~ 63 (466)
...|.+|...|.. ....+....||++||..|...++..... .....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~-~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSL-TLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CCcCCCcCCCCCC-cchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4579999999973 2344556789999999998765432111 1245677775433
No 133
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=65.79 E-value=2.9 Score=33.18 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=27.0
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHH
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQ 43 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~ 43 (466)
+...|.+|...|... ...+..-.||++||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTT-VRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTT-SCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccc-hhcccccCCCcEEChHHhCC
Confidence 345899999999842 35556678999999999654
No 134
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.22 E-value=50 Score=26.16 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
.+++|+.+-..|..+...++..-+..+.++..|+++...|+..|+.
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444677788888888887777764
No 135
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=65.07 E-value=2.4 Score=30.17 Aligned_cols=48 Identities=23% Similarity=0.627 Sum_probs=31.3
Q ss_pred ccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
.|.||...-.+ ..+..--.|...||..|+..-+...+ .+...||.|+.
T Consensus 2 ~C~vC~~~~~~--~~ll~Cd~C~~~~H~~Cl~p~l~~~P-~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED--DKLILCDECNKAFHLFCLRPALYEVP-DGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC--SCCEECTTTCCEECHHHHCTTCCSCC-SSCCSCTTTSC
T ss_pred CCCCCCCCCCC--CCEEECCCCChhhCcccCCCCcCCCC-CCcEECcCccc
Confidence 58889865331 13333456889999999975333222 35788999975
No 136
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.06 E-value=0.57 Score=35.17 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=25.5
Q ss_pred cccccccccccccccCcceeec---CCCcccHHHHHHHHH
Q 012292 10 TICSICYEDLKPIVEDLQVISI---CGHVFHELCLQQWFE 46 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llp---CGHsFC~~CL~~wle 46 (466)
-.||-|.-.+.-...-..++.. |+|.||+.|+..|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 4788888888722222233333 999999999988854
No 137
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.70 E-value=2.1 Score=39.97 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=26.7
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHH
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQ 43 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~ 43 (466)
...|++|...|.. -...+..-.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~-~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTF-TNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCS-SSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCC-cccccccCCcCCEEChHHhCC
Confidence 4689999999974 235556778999999999654
No 138
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.49 E-value=1.5e+02 Score=31.34 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012292 217 KSLVIRNKNYTELMAKCNLLGREKAR 242 (466)
Q Consensus 217 k~l~~~~k~yeeL~~k~e~L~ree~~ 242 (466)
..|..+...++++..+|.+|+.++.-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777777666554
No 139
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=64.48 E-value=2.5 Score=34.10 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=26.8
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHH
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQW 44 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~w 44 (466)
...|.+|...|.. ....+....||++||..|...+
T Consensus 20 ~~~C~~C~~~F~~-~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTF-TKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCS-SSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccc-hhhCccccCCCCEECCcccCCe
Confidence 3579999999974 2345567789999999996653
No 140
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.16 E-value=53 Score=27.02 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=25.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKAR 242 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~ 242 (466)
+.+.++.|++++-.++.....|..+++.|+.+...
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888888777787777776655544
No 141
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.90 E-value=78 Score=28.00 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
..+...+.-+..+...+..|+..++..
T Consensus 122 ~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 122 EQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444555555555555544443
No 142
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.12 E-value=3.2 Score=32.86 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=26.5
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHH
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQ 43 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~ 43 (466)
+...|.+|...|.. -...+..-.||++||..|...
T Consensus 13 ~~~~C~~C~~~F~~-~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSV-LKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCS-SSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCcccc-chhhhhhcCCCcEEChhhcCC
Confidence 34589999999974 235556678999999999543
No 143
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=63.09 E-value=1.4 Score=40.13 Aligned_cols=50 Identities=22% Similarity=0.529 Sum_probs=34.4
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
+-.|.||.+. +++...-.|...||..|+...+...+ .+...||.|+..-.
T Consensus 4 ~~~C~~C~~~-----g~ll~Cd~C~~~~H~~C~~p~l~~~p-~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNG-----GELLCCEKCPKVFHLSCHVPTLTNFP-SGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCC-----SSCEECSSSSCEECTTTSSSCCSSCC-SSCCCCTTTSCSSS
T ss_pred CCccccCCCC-----CeeeecCCCCcccCccccCCCCCCCC-CCCEECccccCccc
Confidence 4579999843 23444556889999999876544323 35689999987544
No 144
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=63.05 E-value=1.2e+02 Score=30.74 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=6.0
Q ss_pred HhHHHHHHHHH
Q 012292 104 SRLHTVLESQG 114 (466)
Q Consensus 104 ~~L~~~Le~~~ 114 (466)
+.+...|..+.
T Consensus 52 CrLqg~Ldk~e 62 (390)
T 1deq_A 52 CRMKGLIDEVD 62 (390)
T ss_pred chHHHHHHHhh
Confidence 44555555555
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.16 E-value=2.7 Score=39.60 Aligned_cols=34 Identities=18% Similarity=0.452 Sum_probs=26.7
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHH
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQ 43 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~ 43 (466)
...|.+|...|.. -.+.+..-.||++||..|...
T Consensus 164 ~~~C~~C~~~F~~-~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGV-MTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBT-TBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCc-cccccccCCCcCEeChhhcCC
Confidence 3589999999984 235566778999999999664
No 146
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=61.98 E-value=0.86 Score=36.02 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=23.1
Q ss_pred Cccccc--cccccc-ccccCcceee-----cCCCcccHHHHHHH
Q 012292 9 KTICSI--CYEDLK-PIVEDLQVIS-----ICGHVFHELCLQQW 44 (466)
Q Consensus 9 eltCpI--CLe~f~-P~~~~~~~ll-----pCGHsFC~~CL~~w 44 (466)
-.-||- |-..+. +......... .|||.||..|...|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 456877 777665 2111222222 69999999999887
No 147
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=61.72 E-value=0.95 Score=36.18 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=21.9
Q ss_pred ccccccccccccccCcceeec-CCCcccHHHHHHH
Q 012292 11 ICSICYEDLKPIVEDLQVISI-CGHVFHELCLQQW 44 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llp-CGHsFC~~CL~~w 44 (466)
-||=|-..+..........-| |||.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 388787766511112223444 9999999998777
No 148
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.52 E-value=37 Score=26.84 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------HHHHHHHHHHHHHHHH
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFS-------EKLEKAKEKINKLKTR 260 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~-------~kLek~~~ei~~Lk~~ 260 (466)
-|-.++..++--.+++...-.|+++..-..+ ..|+.-+.+|..|..+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555555555555555554444444333333 4444444444444443
No 149
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=61.06 E-value=3.9 Score=31.49 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=25.2
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHH
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQ 42 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~ 42 (466)
..|.+|...|... ...+..-.||++||..|..
T Consensus 12 ~~C~~C~~~F~~~-~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLL-NRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTT-BCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCc-cccccCCCCCEEEcccccC
Confidence 5899999999742 3455567899999999964
No 150
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=60.98 E-value=1.4 Score=40.93 Aligned_cols=52 Identities=23% Similarity=0.468 Sum_probs=35.2
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~ 63 (466)
...+..|.||.+. +++...-.|...||..|+...+...+ .+...||.|+..-
T Consensus 4 d~~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG-----GDLLCCEKCPKVFHLTCHVPTLLSFP-SGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC-----EEEEECSSSSCEECTTTSSSCCSSCC-SSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC-----CceEEcCCCCCccCCccCCCCCCCCC-CCCEEeCceeCcc
Confidence 3445679999843 12334456889999999876554333 3578999998654
No 151
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=60.49 E-value=3.4 Score=36.78 Aligned_cols=53 Identities=13% Similarity=0.360 Sum_probs=36.4
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~ 62 (466)
.+.+.+|.+|...|............|.|.+|..|-. | .+......|-+|+..
T Consensus 65 ~~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~---~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 65 HLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-A---HPEEQGWLCDPCHLA 117 (153)
T ss_dssp TGGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-C---CSSSSSCEEHHHHHH
T ss_pred cCCCccchhhcCccccccCCCCcCCCCCchhhccccc-c---cCCCCcEeeHHHHHH
Confidence 3467899999999874444455567899999999862 2 123356677777543
No 152
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.16 E-value=1.5e+02 Score=30.09 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 222 RNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELET 266 (466)
Q Consensus 222 ~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk 266 (466)
.+...+....++++|.++..+..+.+++.+.+|.+.+++++++-.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 334455556777777777778778888888888888777776644
No 153
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.95 E-value=0.84 Score=33.47 Aligned_cols=53 Identities=23% Similarity=0.507 Sum_probs=35.7
Q ss_pred CCCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 3 IENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 3 ~~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
.++...+..|.||...- .+...-.|...||..|+..-+...+ .+...||.|..
T Consensus 3 ~g~~~~~~~C~vC~~~g-----~ll~Cd~C~~~~H~~Cl~ppl~~~p-~g~W~C~~C~~ 55 (56)
T 2yql_A 3 SGSSGHEDFCSVCRKSG-----QLLMCDTCSRVYHLDCLDPPLKTIP-KGMWICPRCQD 55 (56)
T ss_dssp CCCCSSCCSCSSSCCSS-----CCEECSSSSCEECSSSSSSCCCSCC-CSSCCCHHHHC
T ss_pred CCcCCCCCCCccCCCCC-----eEEEcCCCCcceECccCCCCcCCCC-CCceEChhhhC
Confidence 35566678899998742 2333456888999999875443322 35678999854
No 154
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=59.61 E-value=93 Score=27.45 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 012292 145 KVSVEQLLHSKSQELDKVTLECLKLKQRNM 174 (466)
Q Consensus 145 ~esLeqLL~~q~eEVeklkeE~~rLq~rn~ 174 (466)
+..++..+....+.+..+..|...|-+|.|
T Consensus 105 l~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 105 LISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555
No 155
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=58.84 E-value=62 Score=25.16 Aligned_cols=48 Identities=17% Similarity=0.318 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 012292 226 YTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDN 273 (466)
Q Consensus 226 yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~n 273 (466)
+++......++..+...+.++++.+..++.+..+++...+..|+..+.
T Consensus 29 l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 29 KKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666666788888888888888888888888887553
No 156
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=58.27 E-value=2.8 Score=33.68 Aligned_cols=57 Identities=18% Similarity=0.376 Sum_probs=37.0
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
...+..|.||...-....+.+...-.|.-.||..|+..-. . ..+...||.|......
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--v-P~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--I-PEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--C-CSSCCCCHHHHHHTTS
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--c-CCCceECccccCccch
Confidence 3467899999976421122333445688899999987432 1 2367899999765443
No 157
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=57.36 E-value=70 Score=25.28 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=30.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 227 TELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 227 eeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
.-+..+.++.......+.++|..++..+..|..+++.|++.++.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555588888888888888888888888776
No 158
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=56.59 E-value=53 Score=23.73 Aligned_cols=52 Identities=25% Similarity=0.317 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 218 SLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 218 ~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
........++++..++..+..+...+..+|.++.+.++.....+..++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666667777777777777777777766543
No 159
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=56.52 E-value=2.2 Score=39.14 Aligned_cols=55 Identities=18% Similarity=0.333 Sum_probs=33.1
Q ss_pred Cccccccccccccccc--CcceeecCCCcccHHHHHHH------HHhcCCCCCCCCcCcCccc
Q 012292 9 KTICSICYEDLKPIVE--DLQVISICGHVFHELCLQQW------FEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 9 eltCpICLe~f~P~~~--~~~~llpCGHsFC~~CL~~w------le~~~~~~s~~CP~CR~~~ 63 (466)
...||||...|.+... ..+..-.|.+.||..|..-- +...+......||.|+...
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3579999999985211 12233468889999997421 1100001257999997654
No 160
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=56.43 E-value=6.4 Score=30.30 Aligned_cols=53 Identities=23% Similarity=0.447 Sum_probs=31.6
Q ss_pred CCCCCcccccccccccccccCcceeec--CC-CcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISI--CG-HVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llp--CG-HsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
+..+...| ||-..... ..+..=. |. ..||..|+. +...+ .+...||.|+..-.
T Consensus 12 d~~~~~~C-~C~~~~~g---~MI~CD~~~C~~~wfH~~Cvg--l~~~p-~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSYG---EMIGCDNPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQESG 67 (71)
T ss_dssp CTTSCCCS-TTCCCSCS---SEECCSCSSCSCCCEETTTTT--CSSCC-SSCCCCTTTSSCSS
T ss_pred CCCCCCEE-ECCCCCCC---CEeEeeCCCCCCccEecccCC--cCcCC-CCCEECCCCCcccc
Confidence 33456778 89876431 1111122 55 589999987 33222 36789999976543
No 161
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=55.89 E-value=3.9 Score=35.55 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=33.7
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
....+|.+|...|............|.|.+|..|-.... ..+......|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~-~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS-NNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC-CSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccC-CCCCccceechhhHH
Confidence 567899999999963323334456788999988844210 001123566777765
No 162
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.18 E-value=5.7 Score=32.27 Aligned_cols=51 Identities=24% Similarity=0.454 Sum_probs=31.0
Q ss_pred CCCcccccccccccccccCcceeec--CC-CcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISI--CG-HVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llp--CG-HsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.+...| ||-..... ..+..-. |. ..||..|+. +...+ .+...||.|+..-.
T Consensus 34 ~e~~yC-iC~~~~~g---~MI~CD~~dC~~~WfH~~CVg--l~~~p-~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSYG---EMIGCDNPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCCS---CCCCCSCSSCSCCCCCSTTTT--CSSCC-CSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCCC---CEeEecCCCCCCCCEecccCC--cCcCC-CCCEECcCccCcCC
Confidence 455677 99886531 1111223 55 589999987 22222 36789999976543
No 163
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=54.50 E-value=85 Score=25.39 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012292 210 DTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKT 259 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~ 259 (466)
+-+++|..++......-..|...+..|.++.......+..+..+...|..
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 34466666666666666666666666666666666666655555555544
No 164
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.21 E-value=1.1 Score=36.03 Aligned_cols=56 Identities=14% Similarity=0.316 Sum_probs=36.6
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHh---cCCCCCCCCcCcCcccc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEY---CSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~---~~~~~s~~CP~CR~~~~ 64 (466)
+..|.||...-.+....+...-.|...||..|+..-+.. ....+...||.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 458999997644212334445568999999998754331 11236789999976544
No 165
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=53.16 E-value=1.2e+02 Score=26.75 Aligned_cols=75 Identities=12% Similarity=0.064 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Q 012292 110 LESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184 (466)
Q Consensus 110 Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLK 184 (466)
.......+..++.++..+..++......+.++-+..+.++..+..+.-++..+.....+++.+|..|......-+
T Consensus 63 ~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 63 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777666666666666666777777777777777888888888888888887776655544333
No 166
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=52.87 E-value=42 Score=35.19 Aligned_cols=70 Identities=17% Similarity=0.087 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFS---EKLEKAKEKINKLKTRVQELETAVELKDNEVLRALK 280 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~---~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~ 280 (466)
.+-.|-..........++|.++.|.+.++...++ .+.+.+..+...|++++++|+..+...+.++...|.
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555566777777777777665543 234567778888999999999999888888665444
No 167
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.52 E-value=1.1e+02 Score=25.95 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 012292 210 DTIDVLRKSLVIRNKNYTELM 230 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k~yeeL~ 230 (466)
..|+.|++++..+...++.++
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367777777776666555554
No 168
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=52.45 E-value=87 Score=24.92 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 239 EKARFSEKLEKAKEKINKLKTRVQELET 266 (466)
Q Consensus 239 ee~~~~~kLek~~~ei~~Lk~~v~eLqk 266 (466)
+...-.+.++....+|.+.++++.+|+.
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333345555556666666666665554
No 169
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=51.32 E-value=49 Score=34.24 Aligned_cols=61 Identities=21% Similarity=0.190 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012292 220 VIRNKNYTELMAKCNLLGREKARFS---EKLEKAKEKINKLKTRVQELETAVELKDNEVLRALK 280 (466)
Q Consensus 220 ~~~~k~yeeL~~k~e~L~ree~~~~---~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~ 280 (466)
.......++|.++-|.+.++...++ .+.+.+..+...|++++++|++.+...+.++...|.
T Consensus 41 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 41 RTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666665533 234567788888999999999999988888655444
No 170
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=51.26 E-value=16 Score=30.34 Aligned_cols=52 Identities=27% Similarity=0.448 Sum_probs=32.0
Q ss_pred CCccccccccccc----ccccCcceeecCCCcccHHHHHH---HHHhcCCCCCCCCcCcC
Q 012292 8 GKTICSICYEDLK----PIVEDLQVISICGHVFHELCLQQ---WFEYCSSSKKCTCPVCK 60 (466)
Q Consensus 8 ~eltCpICLe~f~----P~~~~~~~llpCGHsFC~~CL~~---wle~~~~~~s~~CP~CR 60 (466)
....|.+|+..=. ...+.+..-..|+..||..||.- .... .......||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~-~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVR-VKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHH-HHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHH-hhccccccccCC
Confidence 3568999987531 11234555678999999999952 1111 112567788775
No 171
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=51.13 E-value=91 Score=32.72 Aligned_cols=57 Identities=4% Similarity=0.025 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012292 224 KNYTELMAKCNLLGREKARFSE-----------KLEKAKEKINKLKTRVQELETAVELKDNEVLRALK 280 (466)
Q Consensus 224 k~yeeL~~k~e~L~ree~~~~~-----------kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~ 280 (466)
...++|.++-|.+.++...+.+ +.+.+..+...|++++++|+..+...+.++...|.
T Consensus 84 ~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 84 EQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544331 34566777788888888888888888777655443
No 172
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=50.70 E-value=16 Score=32.05 Aligned_cols=49 Identities=18% Similarity=0.458 Sum_probs=33.0
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHH-----hc-CCCCCCCCcCcCc
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFE-----YC-SSSKKCTCPVCKQ 61 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle-----~~-~~~~s~~CP~CR~ 61 (466)
.+-.|.||-+-= .+...-.|-.+||..||.+-+. .- ...+...||.|+.
T Consensus 62 ~~d~C~vC~~GG-----~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGG-----NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCS-----SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCC-----cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456788887542 3344457889999999997543 10 1236789999963
No 173
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=50.35 E-value=1.1e+02 Score=25.51 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=37.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhH
Q 012292 96 VKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMD 175 (466)
Q Consensus 96 l~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~a 175 (466)
++.|...+....+.|......+..++.++ ..+++.++++.-|+++......+...=...+.++..+...
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei-----------~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~ 94 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEA-----------EQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEY 94 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHH
Confidence 33344444444444444444444443333 3344555666666677766666655555555555555443
Q ss_pred HHHHH
Q 012292 176 LAKEL 180 (466)
Q Consensus 176 lakeL 180 (466)
+...+
T Consensus 95 L~~ql 99 (110)
T 2v4h_A 95 LQEQL 99 (110)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 174
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.29 E-value=28 Score=25.22 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHH
Q 012292 209 KDTIDVLRKSLV 220 (466)
Q Consensus 209 ~e~~d~Lkk~l~ 220 (466)
..-+++|+.++.
T Consensus 18 ~~d~eaLk~E~~ 29 (53)
T 2yy0_A 18 NPEIELLRLELA 29 (53)
T ss_dssp CHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 344444444333
No 175
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=49.61 E-value=90 Score=25.31 Aligned_cols=6 Identities=33% Similarity=0.750 Sum_probs=2.1
Q ss_pred HHHHHH
Q 012292 260 RVQELE 265 (466)
Q Consensus 260 ~v~eLq 265 (466)
++.+|+
T Consensus 99 ~l~~lk 104 (117)
T 2zqm_A 99 KLKELT 104 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 176
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=49.22 E-value=95 Score=24.41 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=11.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Q 012292 147 SVEQLLHSKSQELDKVTLECLKL 169 (466)
Q Consensus 147 sLeqLL~~q~eEVeklkeE~~rL 169 (466)
.+-+.|..+..++..+.+...+|
T Consensus 52 ~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 52 RAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh
Confidence 44445555555555555444444
No 177
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=49.09 E-value=44 Score=27.83 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQEL 264 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eL 264 (466)
.+.+|-.++.+|+.+.-.+..++.+.+.+|+.|+.+|.+|
T Consensus 50 ~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 50 KAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 4566888888888888888899999999999999998877
No 178
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=48.59 E-value=3.2 Score=37.99 Aligned_cols=50 Identities=24% Similarity=0.546 Sum_probs=33.8
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
+..|.+|.+. +++...-.|...||..|+..-+...+ .+...||.|+..-.
T Consensus 2 ~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~p~l~~~p-~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 2 ATICRVCQKP-----GDLVMCNQCEFCFHLDCHLPALQDVP-GEEWSCSLCHVLPD 51 (189)
T ss_dssp CCCBTTTCCC-----SSCCCCTTTCCBCCSTTSTTCCSSCC-CTTCCTTTTSCSCC
T ss_pred CCcCccCCCC-----CceeECCCCCchhccccCCCCcccCC-CCCCCCcCccCCCC
Confidence 3579999843 23444557889999999875443222 36789999987643
No 179
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=48.25 E-value=1.3e+02 Score=25.85 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 210 DTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQE 263 (466)
Q Consensus 210 e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~e 263 (466)
.+++.|+.-+-.+.+.+++=+- ...+. -..+++++.|.+.+++++..
T Consensus 112 sMVe~LT~TiG~LrKELEdEkl-----K~~E~--MdSFE~LkvENE~vkerl~m 158 (167)
T 4gkw_A 112 SMVESLTETIGILRKELENEKL-----KAAEN--MDSFEKLSMENENLKEKIAH 158 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHH--HHHHHHHhhhhHhHHHHHHH
Confidence 3555566555555554333221 11111 14567777788888777654
No 180
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.22 E-value=41 Score=26.03 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 012292 251 KEKINKLKTRVQELETAVELKD 272 (466)
Q Consensus 251 ~~ei~~Lk~~v~eLqk~le~~~ 272 (466)
++||....+.+++|++.|..++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd 53 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKD 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444433
No 181
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=48.19 E-value=3.2 Score=39.29 Aligned_cols=50 Identities=24% Similarity=0.600 Sum_probs=28.8
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
..|.+|...-.+ ..+...-.|...||..|+..-+...|.+....||.|+.
T Consensus 175 c~C~vC~~~~~~--~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDP--DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC----CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCC--CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 357777653221 23333456889999999986554334322788999975
No 182
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=47.46 E-value=1.4e+02 Score=25.77 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEK 253 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~e 253 (466)
-+++...|++.|..-.--++++|+.-+.+
T Consensus 106 DLKEKDsMVe~LT~TiG~LrKELEdEklK 134 (167)
T 4gkw_A 106 DLKEKDSMVESLTETIGILRKELENEKLK 134 (167)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443333
No 183
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.19 E-value=34 Score=24.79 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 245 EKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
.+++.++.++..|++++++|+..|
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 184
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.69 E-value=2.1 Score=34.79 Aligned_cols=55 Identities=20% Similarity=0.423 Sum_probs=35.3
Q ss_pred CCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcc
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~ 62 (466)
...+...|.||...-.+ ..+...-.|...||..|+..-+...+ .+...||.|...
T Consensus 12 ~~~~~~~C~vC~~~~~~--~~ll~CD~C~~~~H~~Cl~Ppl~~~P-~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDED--DKLLFCDGCDDNYHIFCLLPPLPEIP-RGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGG--GGCEECTTTCCEECSSSSSSCCSSCC-SSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCC--CCEEEcCCCCchhccccCCCCcccCC-CCCcCCccCcCc
Confidence 34455689999876432 12333446888999999874333222 357889999764
No 185
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=45.94 E-value=8.1 Score=29.75 Aligned_cols=54 Identities=19% Similarity=0.401 Sum_probs=35.3
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~ 62 (466)
...+..|.||...-....+.+...-.|.-.||..|+..-. ...+...||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS---CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc---CCCCCcCCccCcCc
Confidence 3457789999876421122344445788999999987421 12367899999754
No 186
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.90 E-value=52 Score=33.46 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELE 265 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLq 265 (466)
+.|+.++..+.+..++|...++.++.+...+..+|.+.+....+|.-++++|+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444444455554444444444444444444444444444444443
No 187
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=45.57 E-value=85 Score=25.07 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
.+.+.+..++..|+.+|..|++.+.
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555554
No 188
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=45.24 E-value=32 Score=32.87 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 226 YTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQEL 264 (466)
Q Consensus 226 yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eL 264 (466)
|++|..+...|.....++...|..+..|+.+|+++++.|
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555666666666666555443
No 189
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=45.03 E-value=47 Score=27.58 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELE 265 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLq 265 (466)
.+.+|-.++.+|+.+.-.+..++.+.+.+|+.|+.+|.+|.
T Consensus 50 ~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dlg 90 (106)
T 1j1d_B 50 KAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQ 90 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45667888888888888888999999999999999998873
No 190
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=44.91 E-value=5.2 Score=32.33 Aligned_cols=50 Identities=24% Similarity=0.512 Sum_probs=34.3
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcc
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~ 62 (466)
..+..|.||...= ++...-.|.-.||..|+..-+...+ .+...||.|+..
T Consensus 23 ~n~~~C~vC~~~g-----~LL~CD~C~~~fH~~Cl~PpL~~~P-~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPG-----DLVMCNQCEFCFHLDCHLPALQDVP-GEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSS-----CCEECTTSSCEECTTSSSTTCCCCC-SSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCC-----CEEECCCCCCceecccCCCCCCCCc-CCCcCCccccCC
Confidence 3456899998541 3334456888999999976544323 367899999764
No 191
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.77 E-value=61 Score=33.11 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKAR-FSEKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKV 281 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~-~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~ 281 (466)
.|-..........++|.++-+.+.++... ...+.+.+..+...|++++++|+..+...+.++...+..
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444566666666666655543 114456677888889999999999998888886555443
No 192
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=44.71 E-value=4.2 Score=33.95 Aligned_cols=49 Identities=20% Similarity=0.499 Sum_probs=30.4
Q ss_pred ccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
.|.||...-.+ ...+...-.|...||..|+..-+...+ .+...||.|+.
T Consensus 63 ~C~vC~~~~~~-~~~ll~Cd~C~~~yH~~Cl~p~l~~~P-~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKN-ADNMLFCDSCDRGFHMECCDPPLTRMP-KGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCT-TCCCEECTTTCCEECGGGCSSCCSSCC-SSCCCCTTTSC
T ss_pred ccccccCcCCC-ccceEEcCCCCCeeecccCCCCCCCCC-CCCeECCCCCC
Confidence 56677654211 113333456889999999875444333 35789999975
No 193
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=44.48 E-value=1.2e+02 Score=24.04 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=18.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 96 VKILEVKVSRLHTVLESQGKEIKEINEELCLCK 128 (466)
Q Consensus 96 l~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~K 128 (466)
++.|+.++..+.+.+....-+++.++.+-..+.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555555555554444
No 194
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=44.06 E-value=32 Score=31.49 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=27.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 231 AKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 231 ~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
.-+..|.-|...+..+|+....||+.|+++++.++....
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455556666667788888888888888888777764
No 195
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=44.04 E-value=1.1e+02 Score=23.88 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012292 251 KEKINKLKTRVQELETA 267 (466)
Q Consensus 251 ~~ei~~Lk~~v~eLqk~ 267 (466)
+..|+.|+.+.++|.+.
T Consensus 59 ~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 59 DKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 196
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=43.56 E-value=2.5 Score=31.94 Aligned_cols=52 Identities=23% Similarity=0.460 Sum_probs=34.5
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~ 63 (466)
...+..|.||.+.- .+...-.|...||..|+..-+...+ .+...||.|...-
T Consensus 5 ~~~~~~C~vC~~~g-----~ll~CD~C~~~fH~~Cl~ppl~~~P-~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 5 QKNEDECAVCRDGG-----ELICCDGCPRAFHLACLSPPLREIP-SGTWRCSSCLQAT 56 (66)
T ss_dssp CSCCCSBSSSSCCS-----SCEECSSCCCEECTTTSSSCCSSCC-SSCCCCHHHHHTC
T ss_pred CCCCCCCccCCCCC-----CEEEcCCCChhhcccccCCCcCcCC-CCCeECccccCcc
Confidence 34567899998641 2333446888999999875433222 3578899996543
No 197
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=43.56 E-value=27 Score=30.08 Aligned_cols=51 Identities=18% Similarity=0.416 Sum_probs=32.5
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHH-----HHhc-CCCCCCCCcCcCc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQW-----FEYC-SSSKKCTCPVCKQ 61 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~w-----le~~-~~~~s~~CP~CR~ 61 (466)
.-.+..|.||-+-= .+...-.|-.+||..||.+- +... .......|+.|+.
T Consensus 54 Dg~~~~C~vC~dGG-----~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG-----NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCS-----EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCC-----eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 33455688887542 22233468899999999975 2211 1236789999954
No 198
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.55 E-value=90 Score=24.37 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 226 YTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 226 yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
...|-.+++.|.-+...++.++.....-.++++.++.+|+..|.
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777777777777788888888888877664
No 199
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=43.48 E-value=3.1 Score=32.72 Aligned_cols=33 Identities=27% Similarity=0.633 Sum_probs=23.2
Q ss_pred eecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 29 ISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 29 llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
.-.|...||..|+..-+...+.+....||.|+.
T Consensus 44 CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 44 CDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp CTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred eCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 345788999999986655444433389999975
No 200
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=43.23 E-value=13 Score=28.13 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=30.7
Q ss_pred CCCCCCcccccccccccccccCcceee-cCCCcccHHHHHHHHH------hcCCCCCCCCcCcC
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVIS-ICGHVFHELCLQQWFE------YCSSSKKCTCPVCK 60 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~ll-pCGHsFC~~CL~~wle------~~~~~~s~~CP~CR 60 (466)
.++.....|++|...+.+. ...+..- .|.--||..|+.---. ..+ .....||.|.
T Consensus 3 ~~~~~~~~C~~C~~p~~~~-~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~-~~~w~C~~C~ 64 (65)
T 2vpb_A 3 SSSDPVYPCGICTNEVNDD-QDAILCEASCQKWFHRICTGMTETAYGLLTAEA-SAVWGCDTCM 64 (65)
T ss_dssp ------CBCTTTCSBCCTT-SCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCT-TEEECCHHHH
T ss_pred CCCCCcCcCccCCCccCCC-CCeEecccCccccCchhccCCCHHHHHHhhccC-CCcEECcCcc
Confidence 4456677899999998742 2222223 6788999999752211 011 2357799885
No 201
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.37 E-value=1.6e+02 Score=24.93 Aligned_cols=73 Identities=23% Similarity=0.186 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 012292 92 SRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECL 167 (466)
Q Consensus 92 l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~ 167 (466)
.+.++..++..+..+...++..+.....|+..+.....+...+....+..+ ..++..+...+.+......+..
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i---~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMI---GSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666555555555555444433333223222222 2344444444444444333333
No 202
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=42.33 E-value=3.3 Score=30.59 Aligned_cols=50 Identities=24% Similarity=0.586 Sum_probs=33.6
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccc
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~ 63 (466)
.+..|.||...= .+...-.|...||..|+..-+...+ .+...||.|....
T Consensus 4 ~~~~C~vC~~~g-----~ll~Cd~C~~~fH~~Cl~ppl~~~p-~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSG-----QLLMCDTCSRVYHLDCLDPPLKTIP-KGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCS-----SCEECSSSSCEECGGGSSSCCSSCC-CSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCC-----cEEEcCCCCcCEECCcCCCCcCCCC-CCceEChhccChh
Confidence 467899998631 2333456889999999885444323 3578899996543
No 203
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=42.25 E-value=1.4 Score=36.27 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=28.9
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.+..||+|...+.+. =|+.+|..|-..+. ....||.|..++.
T Consensus 31 M~~~CP~Cq~eL~~~---------g~~~hC~~C~~~f~------~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQD---------NGHARCRSCGEFIE------MKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEE---------TTEEEETTTCCEEE------EEEECTTTCSBCE
T ss_pred ccccCccCCCcceec---------CCEEECccccchhh------ccccCcchhhHHH
Confidence 458999999998642 23445777744321 3578999998875
No 204
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=42.20 E-value=77 Score=24.47 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKIN 255 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~ 255 (466)
..+.+++.|..++...+++..+++.+++|..-+=.||...+.-..
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q 47 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQ 47 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 467888888888888888888888888776665555555444333
No 205
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=40.96 E-value=10 Score=31.20 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=11.4
Q ss_pred cccHHHHHHHHHh
Q 012292 35 VFHELCLQQWFEY 47 (466)
Q Consensus 35 sFC~~CL~~wle~ 47 (466)
-||..||..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999873
No 206
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.93 E-value=10 Score=31.15 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=11.4
Q ss_pred cccHHHHHHHHHh
Q 012292 35 VFHELCLQQWFEY 47 (466)
Q Consensus 35 sFC~~CL~~wle~ 47 (466)
-||..||..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999873
No 207
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=40.46 E-value=1.2e+02 Score=24.79 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012292 221 IRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEV 275 (466)
Q Consensus 221 ~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~ 275 (466)
.......+|...+..|.++... |+.+....+.|+-+-..|+..|+.-.+..
T Consensus 44 ~Vd~t~~eL~~EI~~L~~eI~~----LE~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 44 QVDMTQKHLEEEIARLSKEIDQ----LEKMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555554444 66666777777777777777777655543
No 208
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=40.45 E-value=3.3e+02 Score=28.22 Aligned_cols=7 Identities=43% Similarity=0.691 Sum_probs=0.0
Q ss_pred ccccccc
Q 012292 343 FNAIKNI 349 (466)
Q Consensus 343 ~~~~~~~ 349 (466)
..|+.++
T Consensus 231 w~al~dm 237 (491)
T 1m1j_A 231 MSAFNNI 237 (491)
T ss_dssp -------
T ss_pred hhHHhhh
Confidence 4455443
No 209
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=40.37 E-value=90 Score=21.63 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=23.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 229 LMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 229 L~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
|.+++-.|.++...+..+-+.+++-|..|+.++..|+..+
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555666666777777776666554
No 210
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=40.31 E-value=81 Score=27.25 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELET 266 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk 266 (466)
.+.+|-.++.+|+.+.-.+..++.+.+.+|+.|+.+|.+|+.
T Consensus 66 ~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 66 LARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 456678888888888888889999999999999999999864
No 211
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=40.26 E-value=74 Score=32.49 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
++|..++..+.+..++|.++++++..+......+|.+.+.+..+|.-.+++|+.-+.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 5666666676667777777666666666666666666666666666666666544443
No 212
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=39.81 E-value=2e+02 Score=25.39 Aligned_cols=62 Identities=6% Similarity=0.245 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012292 214 VLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNEV 275 (466)
Q Consensus 214 ~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~ 275 (466)
.+...|..+...+++...+.+.-.|...++.+.+..+..++..-|.++..++..|+..-+++
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el 135 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455444444555555555555555555555555555555555444443
No 213
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=39.49 E-value=17 Score=30.18 Aligned_cols=29 Identities=28% Similarity=0.585 Sum_probs=19.5
Q ss_pred eeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 28 VISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 28 ~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
....||++|+. ..+....||.|+......
T Consensus 69 ~C~~CG~~F~~----------~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 69 QCRKCGFVFKA----------EINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp BBTTTCCBCCC----------CSSCCSSCSSSCCCCBCC
T ss_pred ChhhCcCeecc----------cCCCCCCCcCCCCCccCC
Confidence 46789999931 112457899998865443
No 214
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.45 E-value=1.7e+02 Score=24.56 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 012292 91 VSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKL 169 (466)
Q Consensus 91 ~l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rL 169 (466)
..+.++..++..+..+...++..+.....|+..+.....+...+....+..+ ..++..+...+.+......+...|
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i---~~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKL---AELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666555565555544433333333332222 234444444444444443333333
No 215
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.13 E-value=4.6 Score=31.67 Aligned_cols=49 Identities=22% Similarity=0.556 Sum_probs=30.7
Q ss_pred ccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
.|.||...-.+ ..+...-.|...||..|+..-+...+.+....||.|..
T Consensus 28 ~C~vC~~~~~~--~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEP--NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCS--TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCC--CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 67777753221 22333446889999999986444334333789999964
No 216
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=37.43 E-value=1.2e+02 Score=24.10 Aligned_cols=22 Identities=9% Similarity=0.309 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012292 247 LEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 247 Lek~~~ei~~Lk~~v~eLqk~l 268 (466)
++++..++..+.+++.+|+..|
T Consensus 81 i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 81 EKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 217
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=37.40 E-value=5.8 Score=30.40 Aligned_cols=49 Identities=24% Similarity=0.615 Sum_probs=29.5
Q ss_pred ccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 11 ICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 11 tCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
.|.||...-.+ ..+..--.|...||..|+..-+...+.+....||.|+.
T Consensus 20 ~C~~C~~~~~~--~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP--DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG--GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC--CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45566643221 12223345889999999985444434333789999975
No 218
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=36.94 E-value=1.6e+02 Score=30.70 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=22.5
Q ss_pred HHH-HHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012292 251 KEK-INKLKTRVQELETAVELKDNEVLRALK 280 (466)
Q Consensus 251 ~~e-i~~Lk~~v~eLqk~le~~~ne~l~~l~ 280 (466)
..+ ...|++++++|+..+...+.++...|.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 778888888888888888877655444
No 219
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=36.64 E-value=8.6 Score=31.35 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=29.2
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
...| ||-..... ...+..-.|.-.||..|+..-.... .....||.|+.
T Consensus 28 ~vrC-iC~~~~~~--~~mi~Cd~C~~w~H~~C~~~~~~~~--p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDD--GYMICCDKCSVWQHIDCMGIDRQHI--PDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCS--SCEEEBTTTCBEEETTTTTCCTTSC--CSSBCCTTTSS
T ss_pred CEEe-ECCCccCC--CcEEEcCCCCCcCcCcCCCCCccCC--CCCEECCCCcC
Confidence 3556 88765542 1233345688899999986422211 23689999964
No 220
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=36.55 E-value=8.6 Score=31.76 Aligned_cols=51 Identities=24% Similarity=0.491 Sum_probs=32.8
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcC
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR 60 (466)
..+..|.||.+.=.. ..+..-..|+..||..|+...+.. .......||.|+
T Consensus 5 ~~~~~C~~C~~~g~~--~~ll~C~~C~~~~H~~Cl~~~~~~-~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL--LDQFFCTTCGQHYHGMCLDIAVTP-LKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCT--TTSEECSSSCCEECTTTTTCCCCT-TTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCC--cCCeECCCCCCCcChHHhCCcccc-ccccCccCCcCC
Confidence 456789999876431 122345679999999999865431 112456777764
No 221
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=35.57 E-value=1.9e+02 Score=24.10 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=5.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhh
Q 012292 152 LHSKSQELDKVTLECLKLKQRNM 174 (466)
Q Consensus 152 L~~q~eEVeklkeE~~rLq~rn~ 174 (466)
+..+...-+++..+..+|+.+|.
T Consensus 79 L~~Lt~~Re~V~~eL~rLQ~eNd 101 (112)
T 1x79_B 79 MAVLMQSREQVSEELVRLQKDND 101 (112)
T ss_dssp HHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333344334444444443
No 222
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=35.57 E-value=5.2 Score=29.65 Aligned_cols=50 Identities=24% Similarity=0.450 Sum_probs=28.7
Q ss_pred CCCCCcccccccccccccccCcceeec--CC-CcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISI--CG-HVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llp--CG-HsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
+..+...| ||-..... .....-. |. ..||..|+. +...+ .+...||.|+.
T Consensus 5 d~~e~~yC-~C~~~~~g---~mi~CD~~~C~~~wfH~~Cvg--l~~~p-~~~w~Cp~C~~ 57 (59)
T 3c6w_A 5 GSNEPTYC-LCHQVSYG---EMIGCDNPDCPIEWFHFACVD--LTTKP-KGKWFCPRCVQ 57 (59)
T ss_dssp ---CCEET-TTTEECCS---EEEECSCTTCSSCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred CCCCCcEE-ECCCCCCC---CeeEeeCCCCCCCCEecccCC--cccCC-CCCEECcCccC
Confidence 34556777 89876431 1111123 55 589999987 23222 35788999964
No 223
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=35.49 E-value=1.9e+02 Score=23.85 Aligned_cols=71 Identities=23% Similarity=0.210 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Q 012292 111 ESQGKEIKEINEELCLCKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184 (466)
Q Consensus 111 e~~~~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLK 184 (466)
.......+.|...+...+. .......+....++.++..|.....++..+..........+..+...+..+.
T Consensus 25 ~e~e~~k~eL~~~~~~~~~---~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 25 VDLEREKKELEDSLERISD---QGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555544442 2223444556666777777888888888887777777777776666666666
No 224
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=35.47 E-value=5 Score=29.77 Aligned_cols=45 Identities=27% Similarity=0.488 Sum_probs=27.9
Q ss_pred CCCcccccccccccccccCcceeec-----CC-CcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISI-----CG-HVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llp-----CG-HsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
.+...| ||...... .++- |. ..||..|+. +...+ .+...||.|+.
T Consensus 8 ~e~~~C-~C~~~~~g------~mi~CD~cdC~~~wfH~~Cvg--l~~~p-~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYG------EMIGCDNPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECCS------EEEECSCTTCSSCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCCC------CEEEeCCCCCCCceEehhcCC--CCcCC-CCCEECcCccC
Confidence 345667 89875431 1333 54 579999987 33222 36788999964
No 225
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=35.01 E-value=1.2e+02 Score=21.40 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=15.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 012292 232 KCNLLGREKARFSEKLEKAKEKI----NKLKTRVQELET 266 (466)
Q Consensus 232 k~e~L~ree~~~~~kLek~~~ei----~~Lk~~v~eLqk 266 (466)
++++|+.....+.-++.+.-.|. .+||.++..|+.
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444433333333333 255566655554
No 226
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=34.89 E-value=1.9e+02 Score=24.39 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETA 267 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~ 267 (466)
...+|+.+++.|+.+....+...+++..+.+.|+..+..|+..
T Consensus 41 ~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666667777777777777666433
No 227
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=34.83 E-value=86 Score=24.34 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=21.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhHH
Q 012292 231 AKCNLLGREKARFSEKLEKAKEKI----NKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 231 ~k~e~L~ree~~~~~kLek~~~ei----~~Lk~~v~eLqk~le~~~ne 274 (466)
.++++|+.....++-++.++-.|. .+||+++..|+..+....-+
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~ 54 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDT 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 334444444444443343333332 36677777777766653333
No 228
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.77 E-value=1.5e+02 Score=23.52 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012292 247 LEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 247 Lek~~~ei~~Lk~~v~eLqk~l 268 (466)
|..+-.|+..|.+.+..|+..+
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi 62 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEI 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444443333333333
No 229
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=34.53 E-value=1.4e+02 Score=24.96 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 239 EKARFSEKLEKAKEKINKLKTRVQELE 265 (466)
Q Consensus 239 ee~~~~~kLek~~~ei~~Lk~~v~eLq 265 (466)
......+.++.....|+.+.+.+++++
T Consensus 103 ~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 103 TLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444555555555555444
No 230
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=34.28 E-value=3.9e+02 Score=27.18 Aligned_cols=21 Identities=5% Similarity=0.164 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012292 246 KLEKAKEKINKLKTRVQELET 266 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~eLqk 266 (466)
.++.+...+..++.+++.|+.
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~ 126 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQ 126 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 333333333444444444433
No 231
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=33.76 E-value=8.9 Score=25.45 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=11.4
Q ss_pred CCCccccccccccc
Q 012292 7 FGKTICSICYEDLK 20 (466)
Q Consensus 7 ~~eltCpICLe~f~ 20 (466)
.+...||||+-.|.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 34689999998886
No 232
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=33.67 E-value=1.8e+02 Score=24.75 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGREKARFS---EKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~---~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
+...|+..|......+++|.+-+...++.-.++. .++.+-+.-+..++.+|..++..|.
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHMV 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666677777777788877776666665653 6688888888888888888887764
No 233
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=33.65 E-value=18 Score=30.08 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=30.6
Q ss_pred ccccccccccc-----ccccCcceeecCCCcccHHHHHHHHHh--cCCCCCCCCcCcC
Q 012292 10 TICSICYEDLK-----PIVEDLQVISICGHVFHELCLQQWFEY--CSSSKKCTCPVCK 60 (466)
Q Consensus 10 ltCpICLe~f~-----P~~~~~~~llpCGHsFC~~CL~~wle~--~~~~~s~~CP~CR 60 (466)
..|.||+..-. ...+.+..-..|+.+||..|+...... ........||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 36999987542 111245556789999999998743210 0012457777764
No 234
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=33.30 E-value=1.3e+02 Score=25.65 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhhhHHHHHHH-HH-HHHH--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccchhHH
Q 012292 225 NYTELMAKCNLLGREKARFS-EK-LEKA--KEKINKLKTRVQELETAVELKDNEVLRALKVSKKASQKEE 290 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~-~k-Lek~--~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~~~~~~~ 290 (466)
..++|..++..|.+|...+. +. ...+ -..|..++..+.-+.+.+.+++.+-||..-..|+..+..+
T Consensus 15 s~eEL~~~L~eLK~ELf~LRfq~atgqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk~kk~~P~dl 84 (124)
T 3iz5_c 15 SKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAKQRAQLRLFYKNKKYAPLDL 84 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccc
Confidence 44556666666666666555 22 1112 3578899999999999999999999999888887655443
No 235
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.63 E-value=3.9e+02 Score=26.76 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=15.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012292 231 AKCNLLGREKARFSEKLEKAKEKINKLK 258 (466)
Q Consensus 231 ~k~e~L~ree~~~~~kLek~~~ei~~Lk 258 (466)
++++.|+.+......+|+.+..+|++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555555555555555555544
No 236
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=32.51 E-value=1.6e+02 Score=25.09 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhhhHHHHHHH-HH-HH-HH--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccch
Q 012292 225 NYTELMAKCNLLGREKARFS-EK-LE-KA--KEKINKLKTRVQELETAVELKDNEVLRALKVSKKASQ 287 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~-~k-Le-k~--~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~~~~~~ 287 (466)
+.++|..++..|.+|...+. +. .. .+ -..|..++..+.-+.+.+.+++.+-||-.-..|+..+
T Consensus 14 s~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk~kk~~P 81 (124)
T 4a17_U 14 TEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINEKRRQAVKDQFKGKSLKP 81 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 45667777777777777766 32 22 12 3678999999999999999999999999888887544
No 237
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.42 E-value=36 Score=28.03 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=21.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhccccccCCh
Q 012292 151 LLHSKSQELDKVTLECLKLKQRNMDLAKELASLKLVSDLNL 191 (466)
Q Consensus 151 LL~~q~eEVeklkeE~~rLq~rn~alakeL~sLKlvsd~~~ 191 (466)
.+...+.+++.+..|+.+|+.+...+--.++..-+-.+.++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~ 53 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ 53 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 34445556666666666666665544444444333244444
No 238
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=32.38 E-value=1.6e+02 Score=23.84 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 211 TIDVLRKSLVIRNKNYTELMAKCNLLGRE-----KARFSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 211 ~~d~Lkk~l~~~~k~yeeL~~k~e~L~re-----e~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
.++.|.+++......-+.|++|...+... ......+|..+..+|..|+..+..++.-|.+.++.
T Consensus 23 Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 23 QLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555555655666667777777665532 12223677777888888888888888877776554
No 239
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=32.07 E-value=1.1e+02 Score=20.33 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 241 ARFSEKLEKAKEKINKLKTRVQELET 266 (466)
Q Consensus 241 ~~~~~kLek~~~ei~~Lk~~v~eLqk 266 (466)
.++-+.++.-+.+|.+||++-.+|+.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 34446777788888888888877763
No 240
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.26 E-value=2.2e+02 Score=24.58 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHH
Q 012292 115 KEIKEINEELCLCKERIKEEAALKNEALRQKV----SVEQLLHSKSQELDKVTL 164 (466)
Q Consensus 115 ~~lk~L~eel~~~KeQlkeE~~~l~EkLk~~e----sLeqLL~~q~eEVeklke 164 (466)
..+..+..++..+..++.++...+..+-.... +++.+-..+-++...|..
T Consensus 39 ~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa 92 (135)
T 2e7s_A 39 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVA 92 (135)
T ss_dssp HHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555554444444444 333444444555555544
No 241
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=31.02 E-value=1.1e+02 Score=23.97 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
.+.+.+..+...|+.+|..|++.+.
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555443
No 242
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.65 E-value=1.1e+02 Score=23.51 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 220 VIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 220 ~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
...+..+..|...+=.+......-..=|..|-.+|..|...++.|+..++..
T Consensus 25 ~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 25 DHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667665554432222223667888999999999999998887764
No 243
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.31 E-value=1.6e+02 Score=21.66 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=4.4
Q ss_pred HHHHHhhhhHHH
Q 012292 229 LMAKCNLLGREK 240 (466)
Q Consensus 229 L~~k~e~L~ree 240 (466)
|..+++.|..+-
T Consensus 28 le~~~~~L~~~N 39 (63)
T 1ci6_A 28 LTGECKELEKKN 39 (63)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 244
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.18 E-value=1e+02 Score=23.84 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 247 LEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 247 Lek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
|..|-.+|..|...++.|+..++.
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~ 65 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDD 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 245
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=30.01 E-value=1.9e+02 Score=22.76 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=38.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 208 NKDTIDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELE 265 (466)
Q Consensus 208 ~~e~~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLq 265 (466)
....++.|++.|.+..++......++..+...-.+-++-|..|...+..=+.++.-|.
T Consensus 6 ~~~rl~~L~kqL~IElkVK~GAENmi~~y~~g~~~drKlLaeAQqmL~DSk~KIe~lR 63 (81)
T 1urf_A 6 NLSRVAGLEKQLAIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIR 63 (81)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999998888875543333444444444444444444444
No 246
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=29.90 E-value=7.3 Score=29.14 Aligned_cols=49 Identities=24% Similarity=0.496 Sum_probs=28.3
Q ss_pred CCCCcccccccccccccccCcceeec--CC-CcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISI--CG-HVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llp--CG-HsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
..+...| ||-..... ..+..-. |. ..||..|+.- ... ..+...||.|+.
T Consensus 8 ~~e~~yC-~C~~~~~g---~MI~CD~c~C~~~WfH~~Cvgl--~~~-p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 8 PNEPTYC-LCNQVSYG---EMIGCDNEQCPIEWFHFSCVSL--TYK-PKGKWYCPKCRG 59 (62)
T ss_dssp --CCEET-TTTEECCS---EEEECSCTTCSSCEEETGGGTC--SSC-CSSCCCCHHHHT
T ss_pred CCCCcEE-ECCCCCCC---CeeeeeCCCCCcccEecccCCc--CcC-CCCCEECcCccc
Confidence 3445677 89876432 1111122 54 7999999872 222 236788999964
No 247
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=29.79 E-value=2.4e+02 Score=23.48 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 012292 95 EVKILEVKVSRLHTVLESQGKEIKEINEELCL 126 (466)
Q Consensus 95 El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~ 126 (466)
+++.|......+.+.|......-..+......
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~ 38 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQ 38 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555544433
No 248
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=29.74 E-value=2.2e+02 Score=22.88 Aligned_cols=20 Identities=25% Similarity=0.425 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012292 245 EKLEKAKEKINKLKTRVQEL 264 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eL 264 (466)
+.+..+..++..|..+++.|
T Consensus 79 k~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 79 KKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544
No 249
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=29.58 E-value=2.1e+02 Score=22.64 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=9.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Q 012292 147 SVEQLLHSKSQELDKVTLECLKL 169 (466)
Q Consensus 147 sLeqLL~~q~eEVeklkeE~~rL 169 (466)
.|...+..+.+++..++++...|
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333
No 250
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=29.36 E-value=5.1e+02 Score=27.03 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 237 GREKARFSEKLEKAKEKINKLKTRVQEL 264 (466)
Q Consensus 237 ~ree~~~~~kLek~~~ei~~Lk~~v~eL 264 (466)
+++++....+|...+.+..+.++.+.+|
T Consensus 79 ~~~~AeY~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 79 QKDLADYPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333
No 251
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=29.11 E-value=1.6e+02 Score=26.67 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETA 267 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~ 267 (466)
.+.+|-.++.+|..+.-.+..++.+.+.+|+.|+.+|.+|+..
T Consensus 66 ~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrGK 108 (180)
T 1j1e_C 66 LARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGK 108 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHhc
Confidence 4566788888888888888899999999999999999999643
No 252
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=28.83 E-value=2.5e+02 Score=23.31 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 90 EVSRAEVKILEVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAA 136 (466)
Q Consensus 90 e~l~~El~rLe~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~ 136 (466)
..+..++..++..+..+...-....-++..++..+...+.+.+.+..
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~ 62 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34556666666666655554444445555555555555544444433
No 253
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=28.82 E-value=3e+02 Score=24.14 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=10.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q 012292 226 YTELMAKCNLLGREKARFSEKLEK 249 (466)
Q Consensus 226 yeeL~~k~e~L~ree~~~~~kLek 249 (466)
|.++..-+++++.+....++.+++
T Consensus 102 Yak~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 102 YAQAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555554444444
No 254
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.53 E-value=2e+02 Score=22.11 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=9.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 012292 147 SVEQLLHSKSQELDKVTLECLK 168 (466)
Q Consensus 147 sLeqLL~~q~eEVeklkeE~~r 168 (466)
.+-+.|..+..++..+.+...+
T Consensus 46 ~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 46 TLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 3334444444454444433333
No 255
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.09 E-value=6.5 Score=30.08 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=33.0
Q ss_pred CCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccc
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRC 63 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~ 63 (466)
+.......| ||-....+ ....+..-.|..-||..|+.--.. ........||.|+..-
T Consensus 11 ~~~~~~~~C-~C~~~~~~-g~~mI~Cd~C~~W~H~~Cvg~~~~-~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 11 GVDNWKVDC-KCGTKDDD-GERMLACDGCGVWHHTRCIGINNA-DALPSKFLCFRCIELS 67 (72)
T ss_dssp SSCSSEECC-TTCCCSCC-SSCEEECSSSCEEEETTTTTCCTT-SCCCSCCCCHHHHHHC
T ss_pred CCCCcceEe-eCCCccCC-CCcEEECCCCCCccCCeeeccCcc-ccCCCcEECCCccCCC
Confidence 344556778 79877542 111222335778899999753211 1123568899997644
No 256
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=27.81 E-value=9.8 Score=27.19 Aligned_cols=49 Identities=20% Similarity=0.355 Sum_probs=28.0
Q ss_pred cccccccccccccccCcceee-cCCCcccHHHHHHHHHhcCCCCCCCCcCcC
Q 012292 10 TICSICYEDLKPIVEDLQVIS-ICGHVFHELCLQQWFEYCSSSKKCTCPVCK 60 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~ll-pCGHsFC~~CL~~wle~~~~~~s~~CP~CR 60 (466)
-.|.||...+.+. ...+.-- .|..-||..|+.-...... .....||.|+
T Consensus 3 c~cc~C~~p~~~~-~~mI~Cd~~C~~WfH~~Cvgl~~~~~~-~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDK-VDWVQCDGGCDEWFHQVCVGVSPEMAE-NEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTT-CCEEECTTTTCCEEETTTTTCCHHHHH-HSCCCCSCC-
T ss_pred ccCCCCcCccCCC-CcEEEeCCCCCccCcccccCCCccccC-CCCEECCCCC
Confidence 4688998887531 1111222 5777899999753211100 1568899985
No 257
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.41 E-value=1.4e+02 Score=29.58 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=16.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 231 AKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAV 268 (466)
Q Consensus 231 ~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~l 268 (466)
.++.+|+.........++.+...+..++.++++|+..+
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i 49 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQL 49 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444443
No 258
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=27.33 E-value=89 Score=19.88 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 012292 250 AKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 250 ~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
++++..+|..-+++||+.++..
T Consensus 4 lee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777666543
No 259
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.89 E-value=21 Score=26.59 Aligned_cols=43 Identities=28% Similarity=0.566 Sum_probs=28.1
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCc
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVC 59 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~C 59 (466)
..|--|...|... .......|++.||..|=.=.-+ .-..||-|
T Consensus 16 ~~C~~C~~~~~~~--~~y~C~~C~~~FC~dCD~fiHe-----~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ--HVYVCAVCQNVFCVDCDVFVHD-----SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS--EEECCTTTTCCBCHHHHHTTTT-----TSCSSSTT
T ss_pred CcccccCcccCCC--ccEECCccCcCcccchhHHHHh-----hccCCcCC
Confidence 3588888888521 1123567999999999432222 45689988
No 260
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=26.67 E-value=54 Score=33.58 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 012292 225 NYTELMAKCNLLGREKARFS---EKLEKAKEKINKLKTRVQELETAVELKDNEVLRALKV 281 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~---~kLek~~~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~ 281 (466)
..++|.++-+.+.++...++ .+.+.+..+...|++++++|+..+...+.++...+..
T Consensus 45 ~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 2dq3_A 45 RLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLW 104 (425)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444433321 1233456678888888888888888888886555543
No 261
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=26.44 E-value=2.7e+02 Score=22.79 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHH
Q 012292 220 VIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVEL--KDNEVLRA 278 (466)
Q Consensus 220 ~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~--~~ne~l~~ 278 (466)
..+...|-+|..+.+.+..+-.+.+..-......|..|..+|..|...-.. .+|+..+.
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 262
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=26.27 E-value=3e+02 Score=25.33 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Q 012292 127 CKERIKEEAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASL 183 (466)
Q Consensus 127 ~KeQlkeE~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sL 183 (466)
|+.-+.+-...+.+++.+-+.|...+..+.+++..++++...|+.- ...+.||+.+
T Consensus 99 Wk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL-ae~~q~la~v 154 (209)
T 2wvr_A 99 WKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEV-AEHVQYMAEL 154 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
No 263
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.19 E-value=1.8e+02 Score=20.83 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 212 IDVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELET 266 (466)
Q Consensus 212 ~d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk 266 (466)
.|+|-+... .|+..-.+|.||...-...|.+++.|-..+|+-+..|+.
T Consensus 5 YdQL~~QVe-------~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVE-------ALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 455655443 344444556666666668888888888888888888875
No 264
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.02 E-value=80 Score=21.25 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012292 247 LEKAKEKINKLKTRVQELETA 267 (466)
Q Consensus 247 Lek~~~ei~~Lk~~v~eLqk~ 267 (466)
|+..+.+|.+|+.+++.|+..
T Consensus 10 LeEtkeQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666653
No 265
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=25.86 E-value=9.5 Score=40.08 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=33.1
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
..+...| ||-..+++. .....+-.|.--||..|+.---..........||.|+....
T Consensus 34 ~~~~~yC-~C~~~~d~~-~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 34 PPPPVYC-VCRQPYDVN-RFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CCCCEET-TTTEECCTT-SCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CCCCeEE-eCCCcCCCC-CCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 3444556 998877532 22223345888999999853211100113578999986544
No 266
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.80 E-value=1.4e+02 Score=22.84 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 012292 246 KLEKAKEKINKLKTRVQELETAVE 269 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~eLqk~le 269 (466)
..+.+..++..|+..+..|+..++
T Consensus 44 ~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 44 LHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666666666665554
No 267
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=25.32 E-value=69 Score=23.27 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhhhHH
Q 012292 223 NKNYTELMAKCNLLGRE 239 (466)
Q Consensus 223 ~k~yeeL~~k~e~L~re 239 (466)
++..++|..+++.|+-.
T Consensus 31 kkkweelkkkieelggg 47 (67)
T 1lq7_A 31 KKKWEELKKKIEELGGG 47 (67)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 34677788888888754
No 268
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=25.21 E-value=21 Score=27.95 Aligned_cols=16 Identities=25% Similarity=0.644 Sum_probs=8.8
Q ss_pred CCCCCCCCCccccccc
Q 012292 1 MGIENKFGKTICSICY 16 (466)
Q Consensus 1 ~~~~~~~~eltCpICL 16 (466)
|-+.+......||||.
T Consensus 9 ~~~~~~~~tWVCpICs 24 (76)
T 2j9u_B 9 MASADVVSTWVCPICM 24 (76)
T ss_dssp ------CEEEECTTTC
T ss_pred hcccccccceECcccc
Confidence 4556667778999998
No 269
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.15 E-value=51 Score=24.85 Aligned_cols=42 Identities=14% Similarity=0.380 Sum_probs=30.2
Q ss_pred CCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccC
Q 012292 6 KFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSS 65 (466)
Q Consensus 6 ~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~ 65 (466)
......|+.|-..+.+. .+..-+..||..| +.|-.|+.++..
T Consensus 12 ~~~~~~C~~C~~~I~~~-----~~~a~~~~~H~~C-------------F~C~~C~~~L~~ 53 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGV-----FVKLRDRHRHPEC-------------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCCCSSSCCCCCSS-----CEECSSCEECTTT-------------TSCSSSCCCHHH
T ss_pred CCCCCccccCCCCccCc-----EEEECcceeCcCc-------------CeeCCCCCCCCC
Confidence 34456899999988631 3556788899877 668888887653
No 270
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.11 E-value=28 Score=26.53 Aligned_cols=35 Identities=9% Similarity=-0.022 Sum_probs=23.9
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.+-+.||+|...+.-. . ..+...||.|+..++-.+
T Consensus 8 LeiL~CP~ck~~L~~~--------~------------------~~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 8 LEVLACPKDKGPLRYL--------E------------------SEQLLVNERLNLAYRIDD 42 (67)
T ss_dssp TCCCBCTTTCCBCEEE--------T------------------TTTEEEETTTTEEEEEET
T ss_pred HHHhCCCCCCCcCeEe--------C------------------CCCEEEcCCCCccccCCC
Confidence 4568999999877521 0 014577888988777665
No 271
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.64 E-value=1.6e+02 Score=28.98 Aligned_cols=32 Identities=9% Similarity=0.230 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 239 EKARFSEKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 239 ee~~~~~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
+...+...|+..+..|.+|+.++.+|+..+..
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455666667777777777777665544
No 272
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.53 E-value=1.4e+02 Score=24.80 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 246 KLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 246 kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
.|..++.++..|..++.+|+..++.
T Consensus 12 eL~~~~~ei~~L~~ei~eLk~~ve~ 36 (106)
T 4e61_A 12 ELTKSQETIGSLNEEIEQYKGTVST 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 273
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=24.39 E-value=3.5e+02 Score=23.44 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 225 NYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 225 ~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
.|++...++..+..+..++-.+++.+. .++.+|+..|....|.
T Consensus 74 KyeE~~RKl~~~E~dLeraeeRae~aE-------~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 74 KYEEVARKLVIIESDLERAEERAELSE-------GKCAELEEELKTVTNN 116 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 466666655555555555555555444 4455555555554444
No 274
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.05 E-value=28 Score=26.66 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=22.8
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
+-+.||+|...+.-.. ..+...||.|+..++..+
T Consensus 7 eiL~CP~ck~~L~~~~--------------------------~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 7 DILACPICKGPLKLSA--------------------------DKTELISKGAGLAYPIRD 40 (69)
T ss_dssp GTCCCTTTCCCCEECT--------------------------TSSEEEETTTTEEEEEET
T ss_pred hheeCCCCCCcCeEeC--------------------------CCCEEEcCCCCcEecCcC
Confidence 4578999998775110 014577888888777665
No 275
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.02 E-value=1.8e+02 Score=29.45 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=27.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 012292 227 TELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQELETAVELKDNE 274 (466)
Q Consensus 227 eeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~le~~~ne 274 (466)
++|+.+++.|+++......++++++.++.++++++.+-+..-...-|+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~ 53 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNE 53 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666655555666666666666666655555444444444
No 276
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.87 E-value=2.6e+02 Score=21.82 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 012292 254 INKLKTRVQELETA 267 (466)
Q Consensus 254 i~~Lk~~v~eLqk~ 267 (466)
|++|+.+..+|++.
T Consensus 48 i~~l~~E~~~l~~n 61 (78)
T 3iv1_A 48 VTRLDQEVAEVDKN 61 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 277
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.87 E-value=30 Score=26.35 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=23.6
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.+-+.||+|...+.-. .. .+...||.|+..++-.+
T Consensus 6 L~iL~CP~ck~~L~~~-------~~-------------------~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 6 LDILVCPVTKGRLEYH-------QD-------------------KQELWSRQAKLAYPIKD 40 (68)
T ss_dssp SCCCBCSSSCCBCEEE-------TT-------------------TTEEEETTTTEEEEEET
T ss_pred hhheECCCCCCcCeEe-------CC-------------------CCEEEcCCCCcEecCCC
Confidence 4568999999877521 00 14577888888777665
No 278
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.72 E-value=2e+02 Score=22.74 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012292 247 LEKAKEKINKLKTRVQELETA 267 (466)
Q Consensus 247 Lek~~~ei~~Lk~~v~eLqk~ 267 (466)
++..+.+|..|++..++|+..
T Consensus 47 ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 47 IEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 279
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=23.57 E-value=14 Score=28.49 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=31.4
Q ss_pred CCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 8 GKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 8 ~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.+..--||-..+++. ...+..-.|.--||..|+.-.-..........||.|+....
T Consensus 8 ~~~~yCiC~~~~~~~-~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVT-RFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp CCCEETTTTEECCTT-SCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred CCeeEEECCCcCCCC-CCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCC
Confidence 333444888776531 12222335788999999863211111124678999976543
No 280
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=23.40 E-value=14 Score=29.78 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=28.4
Q ss_pred CCCCCcccccccccccccccCcceeecCC---CcccHHHHHHHHHhcCCCCCCCCcC-cCc
Q 012292 5 NKFGKTICSICYEDLKPIVEDLQVISICG---HVFHELCLQQWFEYCSSSKKCTCPV-CKQ 61 (466)
Q Consensus 5 ~~~~eltCpICLe~f~P~~~~~~~llpCG---HsFC~~CL~~wle~~~~~~s~~CP~-CR~ 61 (466)
+..+...| ||-..... ..+..-.|. ..||..|+. +...+ .+...||. |+.
T Consensus 22 ~~~~~~yC-iC~~~~~g---~MI~CD~c~C~~eWfH~~CVg--l~~~p-~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSYG---PMVACDNPACPFEWFHYGCVG--LKQAP-KGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCS-TTTCCCSS---SEECCCSSSCSCSCEETTTSS--CSSCT-TSCCCSSHHHHH
T ss_pred CCCCCcEE-EeCCCCCC---CEEEecCCCCccccCcCccCC--CCcCC-CCCccCChhhcc
Confidence 34456677 99875431 111122333 589999986 22222 36789999 974
No 281
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=23.38 E-value=2.5e+02 Score=25.74 Aligned_cols=32 Identities=34% Similarity=0.539 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 236 LGREKARFSEKLEKAKEKINKLKTRVQELETA 267 (466)
Q Consensus 236 L~ree~~~~~kLek~~~ei~~Lk~~v~eLqk~ 267 (466)
-+|+.+++..++++..++|+.||.++.+.++.
T Consensus 96 hgreiarllekiqkyfQ~IEtlK~ql~nf~e~ 127 (294)
T 3caz_A 96 HGREIARLLEKIQKYRQEIEEIKKEYKETDKY 127 (294)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 37888888888888888888887776665543
No 282
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.31 E-value=2.7e+02 Score=21.82 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 100 EVKVSRLHTVLESQGKEIKEINEELCLCKERIKEEAALK 138 (466)
Q Consensus 100 e~kl~~L~~~Le~~~~~lk~L~eel~~~KeQlkeE~~~l 138 (466)
+..+..+...-....-++..+...+...+.+.+.+....
T Consensus 6 r~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R 44 (86)
T 3swk_A 6 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR 44 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444444443
No 283
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.23 E-value=28 Score=26.52 Aligned_cols=16 Identities=6% Similarity=0.098 Sum_probs=12.3
Q ss_pred CCCCCcCcCccccCCC
Q 012292 52 KKCTCPVCKQRCSSSN 67 (466)
Q Consensus 52 ~s~~CP~CR~~~~~~~ 67 (466)
+...||.|+..++-.+
T Consensus 25 ~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 25 DELICKGDRLAFPIKD 40 (68)
T ss_dssp TEEEETTTTEEEEEET
T ss_pred CEEEcCCCCcEecCCC
Confidence 4578999988887665
No 284
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.19 E-value=2.2e+02 Score=20.82 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012292 223 NKNYTELMAKCNLLGREKARFSEKLEKAKEKINKLKTRVQE 263 (466)
Q Consensus 223 ~k~yeeL~~k~e~L~ree~~~~~kLek~~~ei~~Lk~~v~e 263 (466)
.....+|..+++.|..+-..+..++..+..++..|+..+..
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 285
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.04 E-value=15 Score=27.85 Aligned_cols=53 Identities=15% Similarity=0.329 Sum_probs=32.4
Q ss_pred CCCCCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCc
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQ 61 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~ 61 (466)
+...+...| ||-..... +..+..-.|..-||..|+.--.. .......||.|+.
T Consensus 14 ~~~~~~~~C-iC~~~~~~--~~MIqCd~C~~WfH~~Cvgi~~~--~~~~~~~C~~C~~ 66 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFAG--RPMIECNECHTWIHLSCAKIRKS--NVPEVFVCQKCRD 66 (68)
T ss_dssp CTTTTCCCS-TTCCCCTT--CCEEECTTTCCEEETTTTTCCTT--SCCSSCCCHHHHT
T ss_pred CCCCCceEe-ECCCcCCC--CCEEECCCCCccccccccCcCcc--cCCCcEECCCCCC
Confidence 345667788 99876641 11222335788999999863211 1125688999964
No 286
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=22.96 E-value=39 Score=25.74 Aligned_cols=35 Identities=26% Similarity=0.573 Sum_probs=25.7
Q ss_pred CCCCCCcccccccccccccccCcceeecC-CCcccHHHHHHH
Q 012292 4 ENKFGKTICSICYEDLKPIVEDLQVISIC-GHVFHELCLQQW 44 (466)
Q Consensus 4 ~~~~~eltCpICLe~f~P~~~~~~~llpC-GHsFC~~CL~~w 44 (466)
....+..-|.||.+.-. .....| |-.||..|....
T Consensus 3 ~~~ee~pWC~ICneDAt------lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 3 SGSSGLPWCCICNEDAT------LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SSCCCCSSCTTTCSCCC------EEETTTTSEEECSSHHHHH
T ss_pred CcCcCCCeeEEeCCCCe------EEecCCCCceehHHHHHHH
Confidence 44556778999999853 235678 889999996553
No 287
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=22.88 E-value=2.4e+02 Score=21.15 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=16.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Q 012292 147 SVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASL 183 (466)
Q Consensus 147 sLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sL 183 (466)
.+........+++...+.++..++..-..+..++.+|
T Consensus 39 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 39 DLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444455555555555544433333444443
No 288
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=22.67 E-value=3.1e+02 Score=22.19 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Q 012292 134 EAALKNEALRQKVSVEQLLHSKSQELDKVTLECLKLKQRNMDLAKELASLK 184 (466)
Q Consensus 134 E~~~l~EkLk~~esLeqLL~~q~eEVeklkeE~~rLq~rn~alakeL~sLK 184 (466)
+....+..+.++.-|++.......+...=+..+.++..+...+...+..|.
T Consensus 31 ~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 31 EAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444444555666666677777766666555566666555444444444333
No 289
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.61 E-value=10 Score=37.56 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=31.4
Q ss_pred CCCcccccccccccccccCcceee----cCC--CcccHHHHHHHHHhcCCCCCCCCcCcCcc
Q 012292 7 FGKTICSICYEDLKPIVEDLQVIS----ICG--HVFHELCLQQWFEYCSSSKKCTCPVCKQR 62 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~ll----pCG--HsFC~~CL~~wle~~~~~~s~~CP~CR~~ 62 (466)
+....||||-..-.-. .+. .=| |.+|..|-..|-- ....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s-----~l~~~g~~~G~R~l~Cs~C~t~W~~-----~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-----MIRQGGKETGLRYLSCSLCACEWHY-----VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-----EEEC----CCEEEEEETTTCCEEEC-----CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-----EEeecCCCCCcEEEEeCCCCCEEee-----cCcCCcCCCCC
Confidence 6788999999876511 011 123 5678888888844 56899999875
No 290
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.28 E-value=3.2e+02 Score=22.22 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Q 012292 122 EELCLCKERIKEEAALKNEALRQKV----SVEQLLHSKSQELDKVTLEC 166 (466)
Q Consensus 122 eel~~~KeQlkeE~~~l~EkLk~~e----sLeqLL~~q~eEVeklkeE~ 166 (466)
.++..+..++.++......+-.... .++.+-..+-++...|.-..
T Consensus 26 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 26 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444333333333 34445555556666664443
No 291
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.09 E-value=48 Score=27.29 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=33.4
Q ss_pred cccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCC
Q 012292 10 TICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSS 66 (466)
Q Consensus 10 ltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~ 66 (466)
+.|..|-..+... .....=|..||..|..+. ....|+.|..++...
T Consensus 31 F~C~~C~~~L~~~----~f~~~~g~~yC~~cy~~~-------~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 31 FCCFDCDSILAGE----IYVMVNDKPVCKPCYVKN-------HAVVCQGCHNAIDPE 76 (126)
T ss_dssp SBCTTTCCBCTTS----EEEEETTEEEEHHHHHHH-------SCCBCTTTCSBCCTT
T ss_pred CCcCCCCCCCCcC----EEEeECCEEechHHhCcC-------cCccCcccCCcCCcC
Confidence 5788888777521 234566888999997664 347899999999853
No 292
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.73 E-value=34 Score=26.24 Aligned_cols=35 Identities=11% Similarity=0.321 Sum_probs=24.3
Q ss_pred CCCcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCccccCCC
Q 012292 7 FGKTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCSSSN 67 (466)
Q Consensus 7 ~~eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~~~~ 67 (466)
.+-+.||+|...+.-. . ..+...||.|+..++-.+
T Consensus 6 L~iL~CP~ck~~L~~~-------~-------------------~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 6 LDILVCPVCKGRLEFQ-------R-------------------AQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CCCCBCTTTCCBEEEE-------T-------------------TTTEEEETTTTEEEEEET
T ss_pred hhheECCCCCCcCEEe-------C-------------------CCCEEEcCCCCceecCCC
Confidence 4568999999877511 0 014578999988887766
No 293
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.33 E-value=1.5e+02 Score=22.99 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=5.9
Q ss_pred hHHHHHHHHH
Q 012292 210 DTIDVLRKSL 219 (466)
Q Consensus 210 e~~d~Lkk~l 219 (466)
..+..|++++
T Consensus 37 sk~~iL~kA~ 46 (80)
T 1nlw_A 37 TTLSLLTKAK 46 (80)
T ss_dssp TTHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3566666654
No 294
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=21.17 E-value=52 Score=20.67 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 012292 248 EKAKEKINKLKTRVQELETAVELK 271 (466)
Q Consensus 248 ek~~~ei~~Lk~~v~eLqk~le~~ 271 (466)
+..+.|++.+|.++..|-..|+..
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677788888888777766653
No 295
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.07 E-value=48 Score=24.15 Aligned_cols=43 Identities=23% Similarity=0.421 Sum_probs=26.2
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQR 62 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~ 62 (466)
...|+||-..|+|...+...-++=|..|=.. .....||+|...
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~l-----------P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDI-----------PDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGS-----------CTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHC-----------CCCCcCcCCCCc
Confidence 3579999999986433333233445544321 145789999874
No 296
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=21.05 E-value=3.3e+02 Score=21.99 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012292 245 EKLEKAKEKINKLKTRVQELETAVEL 270 (466)
Q Consensus 245 ~kLek~~~ei~~Lk~~v~eLqk~le~ 270 (466)
.+=+++-.+++.|...+..|+..+..
T Consensus 61 adREkl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 61 HAREKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666655443
No 297
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=20.83 E-value=27 Score=28.71 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=33.2
Q ss_pred CcccccccccccccccCcceeecCCCcccHHHHHHHH---Hh--cCCCCCCCCcCcCcccc
Q 012292 9 KTICSICYEDLKPIVEDLQVISICGHVFHELCLQQWF---EY--CSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 9 eltCpICLe~f~P~~~~~~~llpCGHsFC~~CL~~wl---e~--~~~~~s~~CP~CR~~~~ 64 (466)
...|+||...+.+.......--.|...||..|+.--. +. ........||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 3579999999864221111111577899999975211 00 01124688999987544
No 298
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=20.80 E-value=9.8 Score=27.11 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=19.4
Q ss_pred eecCCCcccHHHHHHHHHhcCCCCCCCCcCcCcccc
Q 012292 29 ISICGHVFHELCLQQWFEYCSSSKKCTCPVCKQRCS 64 (466)
Q Consensus 29 llpCGHsFC~~CL~~wle~~~~~~s~~CP~CR~~~~ 64 (466)
.+.||++|-..=+... ....||.|...+-
T Consensus 6 C~rCg~~fs~~el~~l-------P~IrCpyCGyrii 34 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKVL-------PGVRCPYCGYKII 34 (48)
T ss_dssp CCCTTTTCCCCCSCCC-------SSSCCTTTCCSCE
T ss_pred eeccCCCccHHHHhhC-------CCcccCccCcEEE
Confidence 4678888875533322 3578999987764
No 299
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=20.77 E-value=66 Score=25.99 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=26.4
Q ss_pred ccccccCCCccccccccccccCCCC--cccccCCCceEEEEE
Q 012292 417 EDVTLIVPDSAQVQPIVNIKKNPPS--PVSLSKPGIFLLVQF 456 (466)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 456 (466)
+.+++..++++-++|.++ +|. +-.+.+|||.+.|+.
T Consensus 57 ~~~~l~~~~~~WA~~~~~----~~~~~~~~~l~~GdvI~V~~ 94 (106)
T 3d0f_A 57 ETIRITGDGLKAAHRFLS----NDPKIGEKRIRPGALIRVKK 94 (106)
T ss_dssp CEEEECGGGGSTTGGGTT----TCTTTGGGSCCTTEEEEEEE
T ss_pred CeEEEcHHHChhhhhccc----ccccchhccCCCCCEEEEEE
Confidence 556677788888887655 333 457789999999974
No 300
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=20.28 E-value=5.2e+02 Score=23.92 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Q 012292 213 DVLRKSLVIRNKNYTELMAKCNLLGREKARFSEKLEKAK-------EKINKLKTRVQELETAVELKDNEVLRALKVS 282 (466)
Q Consensus 213 d~Lkk~l~~~~k~yeeL~~k~e~L~ree~~~~~kLek~~-------~ei~~Lk~~v~eLqk~le~~~ne~l~~l~~~ 282 (466)
..+.+.+....+..+..+.+-+++-++..++..+++++. .++++++.++...+..++..+|++...|...
T Consensus 119 ~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~ 195 (301)
T 2efk_A 119 RRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRF 195 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343333333333333333334444444444444443 3456666666666666666666655554443
No 301
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=20.23 E-value=62 Score=25.13 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhh--hhHHHHHHHHhccccc
Q 012292 255 NKLKTRVQELETAVEL--KDNEVLRALKVSKKAS 286 (466)
Q Consensus 255 ~~Lk~~v~eLqk~le~--~~ne~l~~l~~~~~~~ 286 (466)
+-||+++.+|+..... .+|.+|+.+-....+.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~ 51 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLASPEQLE 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4455555555555554 6788998887776544
Done!