BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012293
         (466 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
 pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
          Length = 1080

 Score = 36.6 bits (83), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 138 SAIKIQSIFRAYLARKAL-CALKGLVKLQALVRGHLVRKQATATLR 182
           +AI IQ   R Y+ RK   C     + LQAL+RG+LVR +    LR
Sbjct: 818 AAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLR 863


>pdb|1JXQ|A Chain A, Structure Of Cleaved, Card Domain Deleted Caspase-9
 pdb|1JXQ|B Chain B, Structure Of Cleaved, Card Domain Deleted Caspase-9
 pdb|1JXQ|C Chain C, Structure Of Cleaved, Card Domain Deleted Caspase-9
 pdb|1JXQ|D Chain D, Structure Of Cleaved, Card Domain Deleted Caspase-9
          Length = 284

 Score = 31.6 bits (70), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 304 RACSGHFEDYSYSTAQSSPQYYSAVSKPDPSRVPF-----AFPRPDYAESLSYDYPLFPN 358
           +AC G  +D+ +  A +SP+  S  S P+P   PF      F + D   SL     +F +
Sbjct: 147 QACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVS 206

Query: 359 Y 359
           Y
Sbjct: 207 Y 207


>pdb|1NW9|B Chain B, Structure Of Caspase-9 In An Inhibitory Complex With Xiap-
           Bir3
          Length = 277

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 304 RACSGHFEDYSYSTAQSSPQYYSAVSKPDPSRVPF-----AFPRPDYAESLSYDYPLFPN 358
           +AC G  +D+ +  A +SP+  S  S P+P   PF      F + D   SL     +F +
Sbjct: 146 QACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVS 205

Query: 359 Y 359
           Y
Sbjct: 206 Y 206


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.124    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,957,314
Number of Sequences: 62578
Number of extensions: 418637
Number of successful extensions: 633
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 5
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)