Query 012293
Match_columns 466
No_of_seqs 279 out of 573
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 01:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.7 5E-17 1.1E-21 140.5 6.6 75 320-398 1-78 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.9 1.2E-05 2.6E-10 50.9 3.4 21 136-156 1-21 (21)
3 KOG0160 Myosin class V heavy c 97.6 0.00015 3.2E-09 82.6 8.3 65 134-202 671-736 (862)
4 smart00015 IQ Short calmodulin 97.4 0.00015 3.3E-09 48.0 3.0 22 135-156 2-23 (26)
5 KOG0520 Uncharacterized conser 97.0 0.00046 1E-08 79.2 3.2 71 134-204 808-886 (975)
6 KOG0160 Myosin class V heavy c 96.6 0.0064 1.4E-07 69.7 8.5 65 134-201 694-758 (862)
7 PTZ00014 myosin-A; Provisional 96.2 0.0057 1.2E-07 70.2 5.5 41 137-177 778-819 (821)
8 PF00612 IQ: IQ calmodulin-bin 95.3 0.019 4.1E-07 36.2 2.8 19 159-177 2-20 (21)
9 KOG2128 Ras GTPase-activating 95.2 0.047 1E-06 65.0 7.5 69 134-202 563-640 (1401)
10 COG5022 Myosin heavy chain [Cy 94.6 0.064 1.4E-06 64.2 6.6 64 134-198 743-807 (1463)
11 KOG0164 Myosin class I heavy c 92.8 0.27 5.9E-06 55.7 7.2 59 134-203 694-753 (1001)
12 smart00015 IQ Short calmodulin 92.5 0.12 2.5E-06 34.2 2.4 19 159-177 4-22 (26)
13 PTZ00014 myosin-A; Provisional 90.5 0.57 1.2E-05 54.2 6.9 40 160-202 779-818 (821)
14 KOG0520 Uncharacterized conser 88.9 0.39 8.4E-06 56.1 3.9 64 137-200 834-930 (975)
15 KOG0161 Myosin class II heavy 81.4 2.1 4.6E-05 53.6 5.5 40 160-199 775-814 (1930)
16 KOG4427 E3 ubiquitin protein l 80.9 1.6 3.4E-05 50.1 3.8 23 134-156 28-50 (1096)
17 KOG0377 Protein serine/threoni 78.7 2.9 6.4E-05 45.5 4.8 35 133-167 14-48 (631)
18 KOG2128 Ras GTPase-activating 78.6 3.1 6.7E-05 50.4 5.4 60 140-202 539-610 (1401)
19 KOG0942 E3 ubiquitin protein l 76.0 1.9 4.1E-05 50.2 2.7 26 133-158 26-51 (1001)
20 KOG0163 Myosin class VI heavy 68.8 13 0.00028 43.1 7.0 50 115-169 797-847 (1259)
21 KOG0161 Myosin class II heavy 58.9 18 0.00039 45.9 6.3 43 135-177 772-818 (1930)
22 KOG0162 Myosin class I heavy c 57.3 8.8 0.00019 44.3 3.1 38 137-177 697-735 (1106)
23 COG5022 Myosin heavy chain [Cy 56.4 39 0.00085 41.7 8.3 68 133-201 790-859 (1463)
24 PF08763 Ca_chan_IQ: Voltage g 44.9 25 0.00055 25.6 2.8 22 135-156 8-29 (35)
25 KOG0165 Microtubule-associated 35.8 88 0.0019 36.7 6.6 35 133-167 940-975 (1023)
26 KOG0942 E3 ubiquitin protein l 35.7 37 0.00081 40.1 3.8 31 152-182 22-53 (1001)
27 PF15157 IQ-like: IQ-like 28.0 52 0.0011 28.7 2.5 22 135-156 46-67 (97)
28 KOG0163 Myosin class VI heavy 25.4 93 0.002 36.6 4.6 23 160-182 815-837 (1259)
29 KOG4427 E3 ubiquitin protein l 24.3 1.8E+02 0.0038 34.5 6.4 24 159-182 31-54 (1096)
30 KOG0164 Myosin class I heavy c 23.7 1.7E+02 0.0037 34.4 6.1 36 161-200 699-734 (1001)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.68 E-value=5e-17 Score=140.52 Aligned_cols=75 Identities=40% Similarity=0.497 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCcccccccchhhhhcccCCCCCCCCCCc---ccCCCccccccc
Q 012293 320 SSPQYYSAVSKPDPSRVPFAFPRPDYAESLSYDYPLFPNYMANTESSRAKVRSQSAPKSRPADTF---ERQPSRSRAYME 396 (466)
Q Consensus 320 nSPr~~Sa~S~~~~s~~~ft~~k~~~~~~~~~~~~~~PnYMA~TeSskAK~RSqSAPrQRp~~~~---er~~srrR~sl~ 396 (466)
|||||++.......+....++.+.++.+..+. . +|||||+|||+|||+|+||+|||||+ .. ++...+||++|+
T Consensus 1 nsPr~~s~~~~~~~~~~~~s~~~~~~~~~s~~-~--~PsYMa~TeSakAK~RsqSaPrqR~~-~~~~~~~~~~~kR~S~~ 76 (102)
T PF13178_consen 1 NSPRLRSASSRSSSSPSRSSPQKSSCRRSSFG-S--LPSYMAATESAKAKARSQSAPRQRPG-TPERAEKQSSKKRLSLP 76 (102)
T ss_pred CCCCccCcccCCCCCcccCCCcccccccCcCC-C--CCCccchhhhhhhhhhccCCcccCCC-ccccccccccccccccC
Confidence 78998887665554444445556666665544 2 99999999999999999999999999 54 455579999998
Q ss_pred CC
Q 012293 397 GR 398 (466)
Q Consensus 397 ~~ 398 (466)
+.
T Consensus 77 ~~ 78 (102)
T PF13178_consen 77 GS 78 (102)
T ss_pred CC
Confidence 64
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.91 E-value=1.2e-05 Score=50.92 Aligned_cols=21 Identities=52% Similarity=0.642 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHh
Q 012293 136 DASAIKIQSIFRAYLARKALC 156 (466)
Q Consensus 136 e~AAv~IQsafRGylaRk~l~ 156 (466)
+.|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999985
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.61 E-value=0.00015 Score=82.58 Aligned_cols=65 Identities=31% Similarity=0.385 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhhh-hhHHHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 012293 134 IEDASAIKIQSIFRAYLARKALCAL-KGLVKLQALVRGHLVRKQATATLRCMQALVTAQARARAQRLRVT 202 (466)
Q Consensus 134 ~ee~AAv~IQsafRGylaRk~l~al-rgiVkLQAlvRG~lvRrq~~~~lr~~~A~v~IQs~iR~~r~R~~ 202 (466)
....+++.||+.||||+.|+.|..+ ++++.||+++||+++|+. . + ...|++.||..+|++..|+.
T Consensus 671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~--~-~-~~~aai~~q~~~r~~~~r~~ 736 (862)
T KOG0160|consen 671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE--T-E-REAAAIGIQKECRSYLNRRR 736 (862)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh--h-H-HHHHHHHhHHHHHHHHHHHH
Confidence 4566788899999999999999955 688899999999999992 1 2 55677777777777666654
No 4
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.40 E-value=0.00015 Score=47.99 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHh
Q 012293 135 EDASAIKIQSIFRAYLARKALC 156 (466)
Q Consensus 135 ee~AAv~IQsafRGylaRk~l~ 156 (466)
++.+|++||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999984
No 5
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.98 E-value=0.00046 Score=79.17 Aligned_cols=71 Identities=31% Similarity=0.318 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhhhh-hHHHHHHhhhhHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHhhhccC
Q 012293 134 IEDASAIKIQSIFRAYLARKALCALK-GLVKLQALVRGHLVRKQATATLRC-------MQALVTAQARARAQRLRVTDE 204 (466)
Q Consensus 134 ~ee~AAv~IQsafRGylaRk~l~alr-giVkLQAlvRG~lvRrq~~~~lr~-------~~A~v~IQs~iR~~r~R~~~~ 204 (466)
....||..||.-||||+.|+.+..++ =+|+||+.|||+.+|++|....+. ..++=++|+.+|+++-+...|
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e 886 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE 886 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence 45678999999999999999999665 699999999999999999843332 566777888888888776644
No 6
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.59 E-value=0.0064 Score=69.72 Aligned_cols=65 Identities=28% Similarity=0.233 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 012293 134 IEDASAIKIQSIFRAYLARKALCALKGLVKLQALVRGHLVRKQATATLRCMQALVTAQARARAQRLRV 201 (466)
Q Consensus 134 ~ee~AAv~IQsafRGylaRk~l~alrgiVkLQAlvRG~lvRrq~~~~lr~~~A~v~IQs~iR~~r~R~ 201 (466)
....+++.||..+||+++|+........+.+|..+|+++.|+++.... .+++.||+.+|+..+|.
T Consensus 694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~~---~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRALI---PASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence 567899999999999999983323457889999999999999995444 79999999999999998
No 7
>PTZ00014 myosin-A; Provisional
Probab=96.23 E-value=0.0057 Score=70.18 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhh-hhhHHHHHHhhhhHHHHHHH
Q 012293 137 ASAIKIQSIFRAYLARKALCA-LKGLVKLQALVRGHLVRKQA 177 (466)
Q Consensus 137 ~AAv~IQsafRGylaRk~l~a-lrgiVkLQAlvRG~lvRrq~ 177 (466)
..++.||++||||++|+.|.. +.+++.||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367889999999999999884 46888999999999988763
No 8
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=95.29 E-value=0.019 Score=36.24 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=16.9
Q ss_pred hhHHHHHHhhhhHHHHHHH
Q 012293 159 KGLVKLQALVRGHLVRKQA 177 (466)
Q Consensus 159 rgiVkLQAlvRG~lvRrq~ 177 (466)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999987
No 9
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.18 E-value=0.047 Score=64.97 Aligned_cols=69 Identities=30% Similarity=0.414 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHhHHHH---HHHHh--hhhhHHHHHHhhhhHHHHHHHHHHHH----HHhHHHHHHHHHHHHHhhhc
Q 012293 134 IEDASAIKIQSIFRAYLA---RKALC--ALKGLVKLQALVRGHLVRKQATATLR----CMQALVTAQARARAQRLRVT 202 (466)
Q Consensus 134 ~ee~AAv~IQsafRGyla---Rk~l~--alrgiVkLQAlvRG~lvRrq~~~~lr----~~~A~v~IQs~iR~~r~R~~ 202 (466)
...-..+.||.++|||+. +..+. ..+-+|++|++.||+++|+.+...++ +|...+.||+.+|.+..|..
T Consensus 563 ~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~ 640 (1401)
T KOG2128|consen 563 KQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKD 640 (1401)
T ss_pred hcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchH
Confidence 356778999999999993 22222 55689999999999999999985553 69999999999999998876
No 10
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=94.55 E-value=0.064 Score=64.15 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHh-hhhhHHHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012293 134 IEDASAIKIQSIFRAYLARKALC-ALKGLVKLQALVRGHLVRKQATATLRCMQALVTAQARARAQR 198 (466)
Q Consensus 134 ~ee~AAv~IQsafRGylaRk~l~-alrgiVkLQAlvRG~lvRrq~~~~lr~~~A~v~IQs~iR~~r 198 (466)
.-...+++||++|||++.|+.|. +++.+..+|.+.+|.++|+.+...++ ....+++|..++...
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 807 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELK-WRLFIKLQPLLSLLG 807 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchH-HHhHHHhhHHhHHHh
Confidence 35678999999999999999998 77777777777777777765542221 244455555554443
No 11
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=92.79 E-value=0.27 Score=55.69 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhhhhhH-HHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcc
Q 012293 134 IEDASAIKIQSIFRAYLARKALCALKGL-VKLQALVRGHLVRKQATATLRCMQALVTAQARARAQRLRVTD 203 (466)
Q Consensus 134 ~ee~AAv~IQsafRGylaRk~l~alrgi-VkLQAlvRG~lvRrq~~~~lr~~~A~v~IQs~iR~~r~R~~~ 203 (466)
+.-.-++.||++|||+++|..|+.++.+ +.++ -.|.+-++ ..+..||.++|+.+.++..
T Consensus 694 ~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k----------s~v~el~~~~rg~k~~r~y 753 (1001)
T KOG0164|consen 694 RLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK----------SYVQELQRRFRGAKQMRDY 753 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHhhhhcccc
Confidence 3445689999999999999999988754 3344 44422222 3455789999999887653
No 12
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=92.46 E-value=0.12 Score=34.16 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=17.2
Q ss_pred hhHHHHHHhhhhHHHHHHH
Q 012293 159 KGLVKLQALVRGHLVRKQA 177 (466)
Q Consensus 159 rgiVkLQAlvRG~lvRrq~ 177 (466)
+.++.||+.+||+++|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5689999999999999987
No 13
>PTZ00014 myosin-A; Provisional
Probab=90.50 E-value=0.57 Score=54.24 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=34.2
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 012293 160 GLVKLQALVRGHLVRKQATATLRCMQALVTAQARARAQRLRVT 202 (466)
Q Consensus 160 giVkLQAlvRG~lvRrq~~~~lr~~~A~v~IQs~iR~~r~R~~ 202 (466)
-++.||+.+||++.|+++.. ..++++.||+.+|++..++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~---~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRK---NIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 46678999999999999943 36899999999999988754
No 14
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=88.93 E-value=0.39 Score=56.07 Aligned_cols=64 Identities=23% Similarity=0.236 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhhh-hh----------HHHHHHhhhhHHHHHHHH----------------------HHHHH
Q 012293 137 ASAIKIQSIFRAYLARKALCAL-KG----------LVKLQALVRGHLVRKQAT----------------------ATLRC 183 (466)
Q Consensus 137 ~AAv~IQsafRGylaRk~l~al-rg----------iVkLQAlvRG~lvRrq~~----------------------~~lr~ 183 (466)
.=+|+||+++|||..|++|+.| .+ --++|.-.||+..|..+. ...+-
T Consensus 834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~ 913 (975)
T KOG0520|consen 834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL 913 (975)
T ss_pred CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999944 32 122488999988775432 11223
Q ss_pred HhHHHHHHHHHHHHHhh
Q 012293 184 MQALVTAQARARAQRLR 200 (466)
Q Consensus 184 ~~A~v~IQs~iR~~r~R 200 (466)
-+|+++||+.+|....+
T Consensus 914 ~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 914 TRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHhcCHHHH
Confidence 57999999999988876
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=81.37 E-value=2.1 Score=53.64 Aligned_cols=40 Identities=30% Similarity=0.313 Sum_probs=34.5
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 012293 160 GLVKLQALVRGHLVRKQATATLRCMQALVTAQARARAQRL 199 (466)
Q Consensus 160 giVkLQAlvRG~lvRrq~~~~lr~~~A~v~IQs~iR~~r~ 199 (466)
-|+.|||.|||+++|+.+...+..+.|+..||..+|.+..
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~ 814 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLK 814 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777899999999999998888889999999999998843
No 16
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.92 E-value=1.6 Score=50.14 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHh
Q 012293 134 IEDASAIKIQSIFRAYLARKALC 156 (466)
Q Consensus 134 ~ee~AAv~IQsafRGylaRk~l~ 156 (466)
+.+.||+.||..+|||++||.+.
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999987
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=78.70 E-value=2.9 Score=45.52 Aligned_cols=35 Identities=29% Similarity=0.177 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHhhhhhHHHHHHh
Q 012293 133 VIEDASAIKIQSIFRAYLARKALCALKGLVKLQAL 167 (466)
Q Consensus 133 ~~ee~AAv~IQsafRGylaRk~l~alrgiVkLQAl 167 (466)
.+...||+.||..||+|.||.+.+..-....+|++
T Consensus 14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 35688999999999999999988765444445553
No 18
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=78.58 E-value=3.1 Score=50.37 Aligned_cols=60 Identities=27% Similarity=0.263 Sum_probs=47.1
Q ss_pred HHHHHHHhHHHHHHHHhhhh--------hHHHHHHhhhhHHHHHHHHH----HHHHHhHHHHHHHHHHHHHhhhc
Q 012293 140 IKIQSIFRAYLARKALCALK--------GLVKLQALVRGHLVRKQATA----TLRCMQALVTAQARARAQRLRVT 202 (466)
Q Consensus 140 v~IQsafRGylaRk~l~alr--------giVkLQAlvRG~lvRrq~~~----~lr~~~A~v~IQs~iR~~r~R~~ 202 (466)
.+||+..|||..|..++... .++.+|+++||+++ +.. ......-+|.+|+..|+...|..
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~ 610 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKK 610 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 34599999999999888543 48889999999996 222 22235779999999999999876
No 19
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.00 E-value=1.9 Score=50.16 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHhhh
Q 012293 133 VIEDASAIKIQSIFRAYLARKALCAL 158 (466)
Q Consensus 133 ~~ee~AAv~IQsafRGylaRk~l~al 158 (466)
.++|++||+||+.||||++|+..+.+
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~~ 51 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKLL 51 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999988733
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=68.78 E-value=13 Score=43.14 Aligned_cols=50 Identities=34% Similarity=0.482 Sum_probs=34.4
Q ss_pred HhhhhheeccCCCCCCCchhHHHHHHHHHHHHhHHHHHHHHh-hhhhHHHHHHhhh
Q 012293 115 QAAAAVIRLTASGSGRASVIEDASAIKIQSIFRAYLARKALC-ALKGLVKLQALVR 169 (466)
Q Consensus 115 ~aa~~vvrlt~~~~~~~~~~ee~AAv~IQsafRGylaRk~l~-alrgiVkLQAlvR 169 (466)
-+|--|+.|...- .-...+.+++|+..||||+|+.++ .+-+++++-+|..
T Consensus 797 ~~a~sVIKLkNkI-----~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~k 847 (1259)
T KOG0163|consen 797 YGALSVIKLKNKI-----IYRAECVLKAQRIARGYLARKRHRPRIAGIRKINALLK 847 (1259)
T ss_pred hhhhheeehhhHH-----HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 3455566654321 135667899999999999999998 6677776655443
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=58.94 E-value=18 Score=45.88 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhh----hhHHHHHHhhhhHHHHHHH
Q 012293 135 EDASAIKIQSIFRAYLARKALCAL----KGLVKLQALVRGHLVRKQA 177 (466)
Q Consensus 135 ee~AAv~IQsafRGylaRk~l~al----rgiVkLQAlvRG~lvRrq~ 177 (466)
...-.+.+|+.+||||+|+.|... .+|..||.=||-++..|..
T Consensus 772 ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 772 LSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 345578899999999999999843 3788899998888777765
No 22
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=57.30 E-value=8.8 Score=44.27 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhh-HHHHHHhhhhHHHHHHH
Q 012293 137 ASAIKIQSIFRAYLARKALCALKG-LVKLQALVRGHLVRKQA 177 (466)
Q Consensus 137 ~AAv~IQsafRGylaRk~l~alrg-iVkLQAlvRG~lvRrq~ 177 (466)
.=|.+||.+||.|++||.|..||- ..+ |+-|.-.||.+
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~ 735 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRY 735 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHH
Confidence 358999999999999999988762 222 44566666665
No 23
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=56.38 E-value=39 Score=41.71 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHh-hhhhHHHHH-HhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 012293 133 VIEDASAIKIQSIFRAYLARKALC-ALKGLVKLQ-ALVRGHLVRKQATATLRCMQALVTAQARARAQRLRV 201 (466)
Q Consensus 133 ~~ee~AAv~IQsafRGylaRk~l~-alrgiVkLQ-AlvRG~lvRrq~~~~lr~~~A~v~IQs~iR~~r~R~ 201 (466)
.....++++||..||.+.-|+.++ .+..|..|| .+.+...++-. ......+.+.+.+|..+|....+.
T Consensus 790 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~-~e~~~~~~~~~L~~~~~rs~~~~k 859 (1463)
T COG5022 790 ELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRET-EEVEFSLKAEVLIQKFGRSLKAKK 859 (1463)
T ss_pred chHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHhhhhhH
Confidence 456788999999999999999999 667888898 45555544442 233445677777777777766543
No 24
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=44.86 E-value=25 Score=25.59 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHh
Q 012293 135 EDASAIKIQSIFRAYLARKALC 156 (466)
Q Consensus 135 ee~AAv~IQsafRGylaRk~l~ 156 (466)
+.-|+.+||-.||-|.+|+.-.
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~~ 29 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQE 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998643
No 25
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=35.77 E-value=88 Score=36.73 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHh-hhhhHHHHHHh
Q 012293 133 VIEDASAIKIQSIFRAYLARKALC-ALKGLVKLQAL 167 (466)
Q Consensus 133 ~~ee~AAv~IQsafRGylaRk~l~-alrgiVkLQAl 167 (466)
+...+||+.||.+.|||.+|+.|+ .+-.|-++-++
T Consensus 940 enkKkaavviqkmirgfiarrkfqmeisniRnrmiq 975 (1023)
T KOG0165|consen 940 ENKKKAAVVIQKMIRGFIARRKFQMEISNIRNRMIQ 975 (1023)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 356789999999999999999998 55555444433
No 26
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.70 E-value=37 Score=40.13 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=24.5
Q ss_pred HHHHh-hhhhHHHHHHhhhhHHHHHHHHHHHH
Q 012293 152 RKALC-ALKGLVKLQALVRGHLVRKQATATLR 182 (466)
Q Consensus 152 Rk~l~-alrgiVkLQAlvRG~lvRrq~~~~lr 182 (466)
|.+.+ ..++.|++|+++||+.+|++.....+
T Consensus 22 Ree~rk~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 22 REEERKQEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred hHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 44444 56799999999999999999865544
No 27
>PF15157 IQ-like: IQ-like
Probab=28.01 E-value=52 Score=28.68 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHh
Q 012293 135 EDASAIKIQSIFRAYLARKALC 156 (466)
Q Consensus 135 ee~AAv~IQsafRGylaRk~l~ 156 (466)
-+.-+..||.+||-||+|....
T Consensus 46 Leskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCCc
Confidence 3555778999999999998754
No 28
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=25.43 E-value=93 Score=36.64 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.4
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHH
Q 012293 160 GLVKLQALVRGHLVRKQATATLR 182 (466)
Q Consensus 160 giVkLQAlvRG~lvRrq~~~~lr 182 (466)
.++++|+.+||+|+|+++...+.
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhchHHH
Confidence 48889999999999999875543
No 29
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.31 E-value=1.8e+02 Score=34.46 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=19.9
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHH
Q 012293 159 KGLVKLQALVRGHLVRKQATATLR 182 (466)
Q Consensus 159 rgiVkLQAlvRG~lvRrq~~~~lr 182 (466)
...+.||+.+|||++||++...++
T Consensus 31 ~aa~~iq~~lrsyl~Rkk~~~~I~ 54 (1096)
T KOG4427|consen 31 AAALFIQRVLRSYLVRKKAQIEIQ 54 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999875444
No 30
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=23.65 E-value=1.7e+02 Score=34.38 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=24.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 012293 161 LVKLQALVRGHLVRKQATATLRCMQALVTAQARARAQRLR 200 (466)
Q Consensus 161 iVkLQAlvRG~lvRrq~~~~lr~~~A~v~IQs~iR~~r~R 200 (466)
++.||..+||.++|..+...+ .+++.|+ .+|....+
T Consensus 699 vtllQK~~RG~~~R~ry~rmk---a~~~ii~-wyR~~K~k 734 (1001)
T KOG0164|consen 699 VTLLQKAWRGWLARQRYRRMK---ASATIIR-WYRRYKLK 734 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHH
Confidence 566799999999999984333 2334444 66655544
Done!