BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012294
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLA----------DSTHRF-IDRDPELFSI 70
S V ++VGG F TT+QTL PKS L +L D T + IDRDP F
Sbjct: 11 SKWVRLNVGGTYFLTTRQTLC-RDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGP 69
Query: 71 LLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLL 105
+L+ LR G L K E ++EE++FYNI SL+
Sbjct: 70 VLNYLRHGKLVIN-KDLAEEGVLEEAEFYNITSLI 103
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLA----------DSTHRF-IDRDPELFSI 70
S V ++VGG F TT+QTL PKS L +L D T + IDRDP F
Sbjct: 5 SKWVRLNVGGTYFLTTRQTLC-RDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGP 63
Query: 71 LLSLLRTGNLPSKAKAFDIEDLIEESKFYNIESLL 105
+L+ LR G L K E ++EE++FYNI SL+
Sbjct: 64 VLNYLRHGKLVIN-KDLAEEGVLEEAEFYNITSLI 97
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 24 IVTIDVGGQIFQTTKQTLALAGPKSLLSKLA-------DSTHRFIDRDPELFSILLSLLR 76
++ ++V G+ FQT + TL P +LL D+ F DRDPE+F +L+ R
Sbjct: 14 LIVLNVSGRRFQTWRTTLERY-PDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 72
Query: 77 TGNL 80
TG L
Sbjct: 73 TGKL 76
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 24 IVTIDVGGQIFQTTKQTLALAGPKSLLSKLA-------DSTHRFIDRDPELFSILLSLLR 76
++ ++V G+ FQT + TL P +LL D+ F DRDPE+F +L+ R
Sbjct: 36 LIVLNVSGRRFQTWRTTLERY-PDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 94
Query: 77 TGNL 80
TG L
Sbjct: 95 TGKL 98
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 24 IVTIDVGGQIFQTTKQTLALAGPKSLLSKLA-------DSTHRFIDRDPELFSILLSLLR 76
++ ++V G+ FQT + TL P +LL D+ F DRDPE+F +L+ R
Sbjct: 42 LIVLNVSGRRFQTWRTTLERY-PDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 100
Query: 77 TGNL 80
TG L
Sbjct: 101 TGKL 104
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shal Voltage- Gated Potassium Channel
Length = 105
Score = 36.2 bits (82), Expect = 0.036, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 24 IVTIDVGGQIFQTTKQTLALAGPKSLLSKL-------ADSTHRFIDRDPELFSILLSLLR 76
++ ++V G FQT + TL P +LL ++ F DRDP++F +L+ R
Sbjct: 1 LIVLNVSGTRFQTWQDTLERY-PDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYR 59
Query: 77 TGNL 80
TG L
Sbjct: 60 TGKL 63
>pdb|2ROV|A Chain A, The Split Ph Domain Of Rock Ii
Length = 117
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 222 AIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWV- 280
I SS K LF E + SN MV DI+ L V + Q ++Y D + ++ +
Sbjct: 25 VIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQILYAN 84
Query: 281 ----SSYNLLLASGSHSDISK 297
S+ NLLL + S + K
Sbjct: 85 EGISSAKNLLLLANSTEEQQK 105
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 29 VGGQIFQTTKQTLALAGP---KSLLSKLADSTHRFI---DRDPELFSILLSLLRTGNLPS 82
V GQ FQ K LA P ++ +S + D +PE+F ++ + TG P+
Sbjct: 181 VAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPN 240
Query: 83 KAKAFDIEDLIEESKFYNIESLLI 106
K D DL+ + Y +E L +
Sbjct: 241 LDKMAD--DLLAAADKYALERLKV 262
>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily)
Voltage-gated Potassium Channel
Length = 115
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 23 NIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--------THRFIDRDPELFSILLSL 74
N V I+VGG +T K TL P + LS+L + F DR P +F+ +++
Sbjct: 5 NRVIINVGGIRHETYKATLKKI-PATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINY 63
Query: 75 LRTGNL--PSKAKAFDIEDLIEESKFYNIES 103
R+G L P+ E EE +F+ ++S
Sbjct: 64 YRSGKLHYPTDVCGPLFE---EELEFWGLDS 91
>pdb|2PE4|A Chain A, Structure Of Human Hyaluronidase 1, A Hyaluronan
Hydrolyzing Enzyme Involved In Tumor Growth And
Angiogenesis
Length = 424
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 183 VAAAGATDFSGLQVLDLENGYVKETLNWEN----VTRSSSTVQA 222
+AA A DFSGL V+D E + NW+ RS + VQA
Sbjct: 95 LAAIPAPDFSGLAVIDWEAWRPRWAFNWDTKDIYRQRSRALVQA 138
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 29 VGGQIFQTTKQTLALAGP---KSLLSKLADSTHRFI---DRDPELFSILLSLLRTGNLPS 82
V GQ FQ K LA P ++ +S + D +PE+F ++ + TG P+
Sbjct: 32 VAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPN 91
Query: 83 KAKAFDIEDLIEESKFYNIESLLI 106
K D DL+ + Y +E L +
Sbjct: 92 LDKMAD--DLLAAADKYALERLKV 113
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 33 IFQTTKQTLALAGPKSLLSKLADSTHRFIDRDPEL----FSI----------LLSLLRTG 78
I QT K P +L D T+ IDR PEL F I L L G
Sbjct: 111 IAQTVKGFSGDGLPNMILDDGGDLTNLVIDRYPELVPKIFGISEETTTGVKNLYKRLSKG 170
Query: 79 NLPSKAKAFDIEDLIEESKFYNI 101
NLP A ++ D + +SKF N+
Sbjct: 171 NLP--ISAINVNDSVTKSKFDNL 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,418,389
Number of Sequences: 62578
Number of extensions: 552722
Number of successful extensions: 1282
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 31
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)