Query 012294
Match_columns 466
No_of_seqs 356 out of 1756
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 01:06:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2714 SETA binding protein S 100.0 4E-57 8.6E-62 457.1 26.3 430 20-466 8-463 (465)
2 KOG4441 Proteins containing BT 100.0 1E-48 2.2E-53 424.4 23.0 332 22-393 36-530 (571)
3 PHA02713 hypothetical protein; 100.0 5.7E-40 1.2E-44 356.0 23.7 304 22-364 25-542 (557)
4 PHA02790 Kelch-like protein; P 100.0 6.4E-36 1.4E-40 319.1 23.2 295 23-363 23-478 (480)
5 KOG4441 Proteins containing BT 100.0 3.9E-35 8.4E-40 318.5 20.4 213 121-364 314-555 (571)
6 PHA03098 kelch-like protein; P 100.0 5E-31 1.1E-35 284.0 24.7 331 23-394 10-496 (534)
7 PHA02713 hypothetical protein; 100.0 1.2E-27 2.6E-32 259.8 21.1 208 153-393 274-520 (557)
8 TIGR03547 muta_rot_YjhT mutatr 99.9 1E-23 2.2E-28 215.3 23.3 237 124-394 2-330 (346)
9 PHA02790 Kelch-like protein; P 99.9 5.6E-24 1.2E-28 227.4 16.8 159 122-318 301-478 (480)
10 TIGR03548 mutarot_permut cycli 99.9 1E-22 2.2E-27 206.4 23.1 226 136-393 7-311 (323)
11 TIGR03548 mutarot_permut cycli 99.9 1.6E-22 3.4E-27 205.0 19.9 190 123-341 56-312 (323)
12 PLN02153 epithiospecifier prot 99.9 4.4E-21 9.4E-26 196.0 24.0 235 126-393 19-322 (341)
13 PRK14131 N-acetylneuraminic ac 99.9 2.8E-21 6.2E-26 200.3 21.9 240 121-393 20-351 (376)
14 PHA03098 kelch-like protein; P 99.9 1.8E-21 3.9E-26 209.9 20.0 199 138-364 290-520 (534)
15 TIGR03547 muta_rot_YjhT mutatr 99.9 3.1E-21 6.7E-26 197.0 19.1 199 123-343 46-332 (346)
16 PLN02193 nitrile-specifier pro 99.9 1.3E-19 2.8E-24 193.5 25.1 205 126-364 162-419 (470)
17 PLN02153 epithiospecifier prot 99.8 2E-19 4.3E-24 183.8 24.6 203 163-394 19-260 (341)
18 PRK14131 N-acetylneuraminic ac 99.8 8.2E-19 1.8E-23 182.0 16.6 195 123-342 67-353 (376)
19 PF02214 BTB_2: BTB/POZ domain 99.8 5E-20 1.1E-24 154.6 6.0 82 25-108 1-94 (94)
20 PLN02193 nitrile-specifier pro 99.8 9.9E-18 2.1E-22 179.0 23.5 207 158-394 153-386 (470)
21 KOG2716 Polymerase delta-inter 99.7 1.4E-17 3E-22 160.5 5.2 88 21-110 3-99 (230)
22 KOG1665 AFH1-interacting prote 99.7 1.8E-17 4E-22 156.7 4.2 90 19-109 5-104 (302)
23 KOG2715 Uncharacterized conser 99.6 5.5E-16 1.2E-20 140.7 2.6 84 22-108 20-114 (210)
24 KOG2723 Uncharacterized conser 99.5 9E-15 2E-19 140.2 4.2 89 20-109 6-103 (221)
25 KOG4390 Voltage-gated A-type K 99.5 2.7E-14 5.8E-19 144.3 3.9 104 1-108 20-131 (632)
26 KOG3713 Voltage-gated K+ chann 99.4 1.1E-13 2.4E-18 144.4 6.8 89 20-110 28-134 (477)
27 KOG4693 Uncharacterized conser 99.2 2.6E-10 5.6E-15 111.4 15.6 238 130-393 13-310 (392)
28 KOG0379 Kelch repeat-containin 99.2 7E-10 1.5E-14 119.2 19.3 218 129-366 59-312 (482)
29 KOG0379 Kelch repeat-containin 99.2 1.9E-09 4.1E-14 115.9 21.5 206 163-396 57-286 (482)
30 smart00225 BTB Broad-Complex, 99.0 1.8E-10 3.8E-15 92.5 4.4 81 24-108 1-89 (90)
31 KOG4693 Uncharacterized conser 98.9 2.3E-08 5E-13 97.9 12.7 168 126-319 74-285 (392)
32 PF01344 Kelch_1: Kelch motif; 98.6 2E-08 4.4E-13 73.0 2.8 45 166-216 1-46 (47)
33 KOG1230 Protein containing rep 98.6 1.3E-06 2.7E-11 90.2 16.2 181 158-352 110-341 (521)
34 KOG1230 Protein containing rep 98.6 3.4E-06 7.3E-11 87.2 18.3 206 162-390 62-312 (521)
35 PF13964 Kelch_6: Kelch motif 98.6 7.5E-08 1.6E-12 71.3 4.6 45 166-216 1-46 (50)
36 KOG1545 Voltage-gated shaker-l 98.6 2.9E-08 6.4E-13 100.4 3.1 82 21-104 59-149 (507)
37 smart00612 Kelch Kelch domain. 98.4 6.4E-07 1.4E-11 64.1 4.9 44 182-228 1-47 (47)
38 PF00651 BTB: BTB/POZ domain; 98.2 6.2E-07 1.3E-11 76.0 3.1 86 21-109 9-104 (111)
39 PF01344 Kelch_1: Kelch motif; 98.2 1.8E-06 3.9E-11 62.6 4.5 43 217-275 2-46 (47)
40 PF13964 Kelch_6: Kelch motif 98.2 1.9E-06 4.2E-11 63.6 4.6 45 217-277 2-48 (50)
41 PF07646 Kelch_2: Kelch motif; 98.1 5.8E-06 1.3E-10 61.0 4.4 45 166-216 1-48 (49)
42 cd00200 WD40 WD40 domain, foun 97.9 0.011 2.3E-07 55.0 25.7 226 175-460 56-289 (289)
43 PRK11138 outer membrane biogen 97.8 0.017 3.7E-07 60.3 26.5 242 139-455 117-388 (394)
44 PRK11138 outer membrane biogen 97.7 0.0054 1.2E-07 64.1 21.6 140 223-401 252-393 (394)
45 TIGR03300 assembly_YfgL outer 97.7 0.0062 1.3E-07 62.9 21.8 138 223-399 237-376 (377)
46 TIGR03300 assembly_YfgL outer 97.7 0.0093 2E-07 61.6 22.6 183 179-400 64-257 (377)
47 COG3055 Uncharacterized protei 97.6 0.0019 4E-08 66.3 16.0 227 139-393 43-357 (381)
48 PF07646 Kelch_2: Kelch motif; 97.6 0.00013 2.8E-09 53.7 5.2 41 220-275 4-48 (49)
49 PLN00181 protein SPA1-RELATED; 97.6 0.042 9E-07 62.8 27.8 237 181-460 545-791 (793)
50 TIGR03866 PQQ_ABC_repeats PQQ- 97.5 0.06 1.3E-06 52.0 24.7 230 182-463 44-280 (300)
51 KOG0286 G-protein beta subunit 97.5 0.03 6.6E-07 56.2 22.1 187 178-402 106-303 (343)
52 PF13418 Kelch_4: Galactose ox 97.5 7.9E-05 1.7E-09 54.6 3.1 45 166-216 1-47 (49)
53 cd00200 WD40 WD40 domain, foun 97.5 0.039 8.5E-07 51.2 21.4 152 172-352 95-250 (289)
54 KOG3840 Uncharaterized conserv 97.3 0.00025 5.5E-09 70.9 4.2 81 21-103 94-186 (438)
55 TIGR03866 PQQ_ABC_repeats PQQ- 97.3 0.022 4.8E-07 55.0 17.8 103 229-353 2-105 (300)
56 PTZ00421 coronin; Provisional 97.2 0.051 1.1E-06 59.1 21.7 158 169-354 74-248 (493)
57 KOG4152 Host cell transcriptio 97.1 0.0034 7.4E-08 66.9 11.0 147 127-296 133-345 (830)
58 PF13360 PQQ_2: PQQ-like domai 97.1 0.08 1.7E-06 50.3 19.8 170 141-354 35-233 (238)
59 smart00612 Kelch Kelch domain. 97.1 0.00081 1.8E-08 47.7 4.3 32 285-319 1-32 (47)
60 PF13415 Kelch_3: Galactose ox 97.0 0.0012 2.7E-08 48.5 4.9 40 180-221 1-45 (49)
61 PLN00181 protein SPA1-RELATED; 97.0 0.049 1.1E-06 62.3 20.0 151 275-462 536-690 (793)
62 KOG4350 Uncharacterized conser 96.9 0.00035 7.6E-09 72.3 1.6 89 19-109 41-170 (620)
63 PRK11028 6-phosphogluconolacto 96.9 0.62 1.3E-05 47.0 26.2 229 199-461 58-303 (330)
64 PF13360 PQQ_2: PQQ-like domai 96.8 0.25 5.5E-06 46.8 20.4 128 242-399 3-137 (238)
65 PTZ00420 coronin; Provisional 96.8 0.13 2.8E-06 56.9 20.5 192 169-401 73-292 (568)
66 PTZ00421 coronin; Provisional 96.7 0.31 6.8E-06 53.0 22.1 157 276-463 130-291 (493)
67 PF13418 Kelch_4: Galactose ox 96.6 0.0023 4.9E-08 46.7 3.5 43 217-275 2-47 (49)
68 COG3055 Uncharacterized protei 96.6 0.04 8.6E-07 56.8 13.1 163 179-367 45-267 (381)
69 KOG0310 Conserved WD40 repeat- 96.3 0.049 1.1E-06 57.7 12.7 135 179-348 164-306 (487)
70 KOG0266 WD40 repeat-containing 96.3 0.16 3.6E-06 54.4 16.7 182 241-464 224-411 (456)
71 KOG0296 Angio-associated migra 96.3 0.011 2.3E-07 60.8 7.0 84 229-335 299-383 (399)
72 PF08450 SGL: SMP-30/Gluconola 96.2 1.1 2.3E-05 43.4 20.6 213 180-449 11-243 (246)
73 KOG0308 Conserved WD40 repeat- 96.2 0.088 1.9E-06 57.7 13.6 192 229-461 184-392 (735)
74 KOG3881 Uncharacterized conser 95.9 0.16 3.4E-06 52.9 13.7 131 229-393 162-309 (412)
75 KOG1517 Guanine nucleotide bin 95.9 0.17 3.7E-06 58.3 14.9 187 142-354 1076-1290(1387)
76 cd00216 PQQ_DH Dehydrogenases 95.8 0.39 8.6E-06 51.9 17.1 148 179-354 60-267 (488)
77 KOG0285 Pleiotropic regulator 95.8 0.45 9.8E-06 49.2 16.1 210 200-463 175-390 (460)
78 KOG0646 WD40 repeat protein [G 95.7 0.29 6.3E-06 51.8 14.9 122 282-464 187-309 (476)
79 KOG4152 Host cell transcriptio 95.7 0.11 2.5E-06 55.7 11.8 202 162-393 28-272 (830)
80 KOG0310 Conserved WD40 repeat- 95.7 0.11 2.4E-06 55.1 11.6 154 217-402 68-225 (487)
81 PTZ00420 coronin; Provisional 95.6 1.2 2.6E-05 49.5 19.8 72 275-354 129-200 (568)
82 KOG0284 Polyadenylation factor 95.4 0.038 8.2E-07 57.6 7.0 148 175-354 143-297 (464)
83 cd00216 PQQ_DH Dehydrogenases 95.3 1.6 3.5E-05 47.3 19.4 194 139-354 58-322 (488)
84 TIGR02658 TTQ_MADH_Hv methylam 95.3 2.3 5E-05 44.4 19.7 115 241-366 26-158 (352)
85 KOG0270 WD40 repeat-containing 95.0 0.46 9.9E-06 50.2 13.3 135 241-402 265-404 (463)
86 KOG0268 Sof1-like rRNA process 94.9 0.083 1.8E-06 54.5 7.5 95 243-355 168-263 (433)
87 KOG0315 G-protein beta subunit 94.9 0.82 1.8E-05 45.4 14.0 144 282-462 50-197 (311)
88 PLN02772 guanylate kinase 94.8 0.075 1.6E-06 56.0 7.2 79 165-251 23-109 (398)
89 PRK11028 6-phosphogluconolacto 94.8 3 6.6E-05 42.0 18.8 158 277-462 40-205 (330)
90 KOG0274 Cdc4 and related F-box 94.7 0.7 1.5E-05 50.9 14.8 171 241-463 310-483 (537)
91 KOG0783 Uncharacterized conser 94.6 0.018 3.9E-07 64.5 2.2 85 22-108 558-681 (1267)
92 PF13854 Kelch_5: Kelch motif 94.5 0.064 1.4E-06 38.2 4.1 38 164-207 2-41 (42)
93 KOG0305 Anaphase promoting com 94.5 0.71 1.5E-05 50.0 13.8 153 131-312 217-380 (484)
94 PF13415 Kelch_3: Galactose ox 94.5 0.11 2.3E-06 38.0 5.4 35 283-319 1-36 (49)
95 KOG4649 PQQ (pyrrolo-quinoline 94.4 0.82 1.8E-05 45.7 12.7 107 223-355 16-127 (354)
96 KOG4591 Uncharacterized conser 94.1 0.036 7.9E-07 52.9 2.8 85 21-108 65-158 (280)
97 KOG2321 WD40 repeat protein [G 93.6 0.33 7.1E-06 52.9 9.0 66 282-354 185-261 (703)
98 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.3 1.9 4.1E-05 47.3 14.8 155 179-361 68-297 (527)
99 KOG0281 Beta-TrCP (transducin 93.3 0.39 8.5E-06 49.5 8.6 124 204-354 296-431 (499)
100 KOG0263 Transcription initiati 93.2 0.6 1.3E-05 52.2 10.5 105 277-401 541-648 (707)
101 KOG0316 Conserved WD40 repeat- 93.1 1.4 3E-05 43.5 11.8 215 142-401 70-298 (307)
102 KOG0271 Notchless-like WD40 re 93.1 0.62 1.4E-05 48.6 9.9 130 241-402 136-276 (480)
103 KOG0279 G protein beta subunit 93.1 3.3 7.2E-05 41.7 14.6 183 241-462 126-313 (315)
104 PF02239 Cytochrom_D1: Cytochr 93.1 0.58 1.2E-05 49.0 10.0 98 241-355 15-112 (369)
105 KOG0272 U4/U6 small nuclear ri 92.9 0.81 1.7E-05 48.2 10.4 141 226-400 313-458 (459)
106 KOG2075 Topoisomerase TOP1-int 92.9 0.069 1.5E-06 56.9 2.7 86 19-108 111-209 (521)
107 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.5 6.7 0.00015 43.1 17.7 73 282-354 244-336 (527)
108 PF13854 Kelch_5: Kelch motif 92.5 0.25 5.5E-06 35.0 4.4 34 217-251 5-41 (42)
109 PF10282 Lactonase: Lactonase, 92.5 14 0.00031 37.8 21.9 249 180-461 48-321 (345)
110 KOG0274 Cdc4 and related F-box 92.4 4 8.6E-05 45.1 15.7 159 161-355 322-486 (537)
111 KOG0321 WD40 repeat-containing 92.2 5.8 0.00013 44.0 16.1 171 163-355 93-305 (720)
112 KOG1036 Mitotic spindle checkp 92.2 2.7 5.9E-05 42.7 12.7 100 229-354 67-166 (323)
113 KOG0315 G-protein beta subunit 92.1 1.8 4E-05 43.0 11.1 142 180-352 51-198 (311)
114 KOG0299 U3 snoRNP-associated p 92.0 1.8 4E-05 46.0 11.7 195 224-464 210-412 (479)
115 TIGR02658 TTQ_MADH_Hv methylam 92.0 1.9 4.2E-05 45.0 12.0 87 267-354 243-333 (352)
116 KOG0649 WD40 repeat protein [G 91.9 1.7 3.8E-05 43.1 10.8 112 278-402 120-235 (325)
117 KOG0265 U5 snRNP-specific prot 91.9 1.7 3.6E-05 44.2 10.9 76 273-355 92-167 (338)
118 PF05096 Glu_cyclase_2: Glutam 91.7 1.6 3.4E-05 43.8 10.6 105 179-312 54-161 (264)
119 KOG0316 Conserved WD40 repeat- 91.7 1 2.2E-05 44.5 8.8 93 241-353 80-175 (307)
120 KOG0272 U4/U6 small nuclear ri 91.6 1.1 2.4E-05 47.2 9.5 80 241-335 366-445 (459)
121 KOG0263 Transcription initiati 91.5 1.2 2.6E-05 49.9 10.3 146 181-354 505-652 (707)
122 KOG0271 Notchless-like WD40 re 91.2 3.3 7.2E-05 43.4 12.4 150 277-463 121-277 (480)
123 KOG2048 WD40 repeat protein [G 91.1 17 0.00038 40.6 18.3 95 299-402 224-318 (691)
124 KOG0266 WD40 repeat-containing 90.8 9.6 0.00021 40.9 16.3 165 163-354 239-412 (456)
125 KOG0264 Nucleosome remodeling 90.7 1.9 4.2E-05 45.5 10.4 163 276-462 232-404 (422)
126 TIGR03074 PQQ_membr_DH membran 90.6 26 0.00057 40.4 20.2 74 281-354 314-425 (764)
127 PF06433 Me-amine-dh_H: Methyl 90.4 1.1 2.4E-05 46.4 8.3 159 179-354 155-323 (342)
128 KOG0291 WD40-repeat-containing 89.7 21 0.00045 40.6 17.5 170 147-349 322-506 (893)
129 KOG1539 WD repeat protein [Gen 89.2 1.6 3.5E-05 49.4 8.8 116 223-354 456-609 (910)
130 PF12768 Rax2: Cortical protei 89.1 4.3 9.3E-05 41.1 11.2 119 230-364 1-130 (281)
131 TIGR03074 PQQ_membr_DH membran 89.1 29 0.00062 40.1 19.0 127 223-354 312-480 (764)
132 KOG0313 Microtubule binding pr 89.0 4 8.6E-05 42.7 10.9 116 217-354 260-379 (423)
133 PF07250 Glyoxal_oxid_N: Glyox 89.0 2.3 4.9E-05 42.2 8.9 112 179-316 76-205 (243)
134 KOG0281 Beta-TrCP (transducin 88.9 2.1 4.6E-05 44.3 8.8 172 241-464 216-390 (499)
135 PF10282 Lactonase: Lactonase, 88.8 12 0.00026 38.5 14.5 164 277-462 42-222 (345)
136 KOG1445 Tumor-specific antigen 88.5 0.83 1.8E-05 50.4 5.8 86 298-392 698-783 (1012)
137 COG1520 FOG: WD40-like repeat 88.4 16 0.00035 37.8 15.3 187 179-402 67-277 (370)
138 KOG2437 Muskelin [Signal trans 88.4 0.68 1.5E-05 49.9 5.0 126 217-364 261-421 (723)
139 PF02239 Cytochrom_D1: Cytochr 88.4 3.4 7.3E-05 43.3 10.3 112 282-404 4-118 (369)
140 PF06433 Me-amine-dh_H: Methyl 87.6 11 0.00023 39.3 13.0 197 229-460 49-273 (342)
141 KOG1517 Guanine nucleotide bin 87.6 9.2 0.0002 44.9 13.5 72 277-355 1171-1243(1387)
142 KOG2055 WD40 repeat protein [G 87.5 6.9 0.00015 41.9 11.7 191 168-400 211-415 (514)
143 KOG0270 WD40 repeat-containing 87.3 11 0.00024 40.1 13.1 154 241-402 201-370 (463)
144 KOG0321 WD40 repeat-containing 87.0 1.1 2.4E-05 49.4 5.8 75 273-354 102-178 (720)
145 KOG0313 Microtubule binding pr 86.3 7.1 0.00015 40.9 10.8 72 241-324 321-393 (423)
146 KOG4682 Uncharacterized conser 85.8 0.34 7.4E-06 50.8 1.1 85 19-108 66-162 (488)
147 KOG0264 Nucleosome remodeling 85.5 9.8 0.00021 40.4 11.5 119 277-402 278-404 (422)
148 KOG2437 Muskelin [Signal trans 84.5 1.4 3.1E-05 47.6 5.0 158 165-344 259-459 (723)
149 KOG0285 Pleiotropic regulator 84.5 42 0.0009 35.3 15.2 98 199-319 216-318 (460)
150 KOG0288 WD40 repeat protein Ti 84.3 3.8 8.3E-05 43.2 7.9 54 299-354 321-374 (459)
151 KOG0302 Ribosome Assembly prot 84.0 2.1 4.7E-05 44.6 5.9 110 276-404 262-380 (440)
152 TIGR01640 F_box_assoc_1 F-box 84.0 40 0.00088 32.1 15.2 98 198-316 70-183 (230)
153 KOG0265 U5 snRNP-specific prot 83.9 30 0.00065 35.4 13.7 51 298-351 194-246 (338)
154 KOG0305 Anaphase promoting com 83.2 13 0.00027 40.6 11.6 168 153-352 197-377 (484)
155 KOG0973 Histone transcription 83.2 38 0.00083 39.6 15.9 192 138-360 20-256 (942)
156 KOG1036 Mitotic spindle checkp 83.0 26 0.00056 35.9 12.9 139 279-460 21-161 (323)
157 PF07250 Glyoxal_oxid_N: Glyox 82.8 2.6 5.6E-05 41.8 5.8 91 200-309 48-149 (243)
158 KOG0643 Translation initiation 81.8 14 0.00031 37.2 10.4 74 274-355 150-224 (327)
159 KOG0290 Conserved WD40 repeat- 81.7 4.3 9.4E-05 41.2 6.8 76 274-355 153-231 (364)
160 PF13570 PQQ_3: PQQ-like domai 81.5 2.5 5.4E-05 29.4 3.8 40 310-352 1-40 (40)
161 KOG0269 WD40 repeat-containing 81.4 7 0.00015 44.2 8.9 136 241-401 109-249 (839)
162 PF02897 Peptidase_S9_N: Proly 81.2 64 0.0014 33.6 16.0 199 227-453 134-346 (414)
163 PF08450 SGL: SMP-30/Gluconola 81.0 54 0.0012 31.5 14.7 171 141-337 50-242 (246)
164 KOG2919 Guanine nucleotide-bin 80.6 4.4 9.5E-05 41.7 6.5 147 227-398 219-374 (406)
165 COG2706 3-carboxymuconate cycl 80.2 23 0.0005 36.8 11.6 115 229-354 4-122 (346)
166 KOG0301 Phospholipase A2-activ 80.2 70 0.0015 36.2 15.9 106 217-350 101-207 (745)
167 KOG2695 WD40 repeat protein [G 79.9 3.5 7.5E-05 42.8 5.6 91 226-339 263-365 (425)
168 KOG0273 Beta-transducin family 79.7 23 0.0005 38.2 11.7 60 279-345 417-476 (524)
169 KOG0973 Histone transcription 79.7 13 0.00027 43.4 10.5 59 276-344 134-192 (942)
170 smart00564 PQQ beta-propeller 79.3 3.8 8.2E-05 26.8 3.9 28 282-316 5-32 (33)
171 KOG0291 WD40-repeat-containing 78.8 1.3E+02 0.0028 34.6 22.5 184 225-461 359-549 (893)
172 KOG0308 Conserved WD40 repeat- 78.3 12 0.00025 41.8 9.3 136 199-352 96-244 (735)
173 KOG2321 WD40 repeat protein [G 78.2 27 0.00058 38.7 11.8 177 181-394 187-381 (703)
174 KOG1446 Histone H3 (Lys4) meth 78.1 15 0.00033 37.5 9.4 64 281-354 110-173 (311)
175 KOG0641 WD40 repeat protein [G 77.6 78 0.0017 31.4 14.1 51 278-334 188-245 (350)
176 KOG0282 mRNA splicing factor [ 77.1 7.6 0.00016 41.7 7.3 153 274-463 217-373 (503)
177 KOG2919 Guanine nucleotide-bin 76.8 51 0.0011 34.2 12.8 171 148-354 102-284 (406)
178 KOG0286 G-protein beta subunit 76.3 70 0.0015 32.8 13.4 65 283-354 156-220 (343)
179 PF12768 Rax2: Cortical protei 76.2 34 0.00074 34.7 11.5 100 197-319 15-130 (281)
180 PF01011 PQQ: PQQ enzyme repea 76.2 4.8 0.0001 27.8 3.8 29 284-319 1-29 (38)
181 KOG0293 WD40 repeat-containing 76.0 21 0.00046 38.0 10.0 149 276-462 274-425 (519)
182 KOG0277 Peroxisomal targeting 76.0 14 0.00031 37.0 8.3 73 277-355 110-182 (311)
183 PLN02919 haloacid dehalogenase 75.5 32 0.00069 41.2 12.8 112 223-352 688-834 (1057)
184 PLN02919 haloacid dehalogenase 75.5 87 0.0019 37.6 16.4 65 282-354 813-891 (1057)
185 KOG0318 WD40 repeat stress pro 75.1 39 0.00084 37.0 11.9 108 226-349 234-348 (603)
186 KOG0282 mRNA splicing factor [ 74.6 9.6 0.00021 41.0 7.2 65 283-354 269-333 (503)
187 KOG0273 Beta-transducin family 73.8 16 0.00034 39.4 8.6 93 241-352 431-524 (524)
188 KOG0301 Phospholipase A2-activ 73.8 1.2E+02 0.0026 34.4 15.5 146 217-402 140-288 (745)
189 COG3391 Uncharacterized conser 73.6 63 0.0014 33.8 13.2 197 179-402 84-291 (381)
190 KOG0284 Polyadenylation factor 73.6 5.3 0.00012 42.2 5.0 116 202-351 222-337 (464)
191 KOG2111 Uncharacterized conser 73.5 84 0.0018 32.5 13.3 185 161-354 40-259 (346)
192 KOG0649 WD40 repeat protein [G 73.5 1.1E+02 0.0023 30.9 14.4 86 299-400 177-272 (325)
193 KOG0319 WD40-repeat-containing 72.7 42 0.00091 38.1 11.8 192 223-464 70-270 (775)
194 KOG0639 Transducin-like enhanc 72.2 8.4 0.00018 41.8 6.2 190 229-459 479-701 (705)
195 PLN02772 guanylate kinase 71.8 11 0.00024 40.0 7.0 38 279-318 30-67 (398)
196 KOG0641 WD40 repeat protein [G 71.3 43 0.00094 33.1 10.3 113 223-351 189-303 (350)
197 KOG2048 WD40 repeat protein [G 71.3 22 0.00048 39.7 9.3 88 241-347 46-136 (691)
198 KOG0772 Uncharacterized conser 71.1 14 0.00029 40.4 7.4 148 142-310 328-490 (641)
199 KOG1446 Histone H3 (Lys4) meth 70.4 70 0.0015 32.8 11.9 98 241-354 35-133 (311)
200 COG3386 Gluconolactonase [Carb 70.3 1.3E+02 0.0029 30.7 18.8 146 279-453 117-277 (307)
201 KOG0278 Serine/threonine kinas 69.7 42 0.0009 33.8 9.9 129 241-402 164-297 (334)
202 KOG0307 Vesicle coat complex C 69.1 16 0.00035 43.0 8.0 145 182-354 175-330 (1049)
203 PF05096 Glu_cyclase_2: Glutam 68.8 19 0.00041 36.2 7.6 68 282-354 54-121 (264)
204 KOG4283 Transcription-coupled 68.3 32 0.00069 35.3 8.9 99 241-354 123-222 (397)
205 KOG0295 WD40 repeat-containing 67.0 1.3E+02 0.0028 31.7 13.2 189 218-461 194-405 (406)
206 KOG0295 WD40 repeat-containing 66.9 59 0.0013 34.2 10.7 82 299-393 313-394 (406)
207 KOG4227 WD40 repeat protein [G 66.7 1.5E+02 0.0032 31.7 13.6 208 217-464 105-324 (609)
208 KOG0646 WD40 repeat protein [G 66.4 1.7E+02 0.0036 31.7 14.2 139 299-463 17-207 (476)
209 KOG2445 Nuclear pore complex c 66.1 56 0.0012 33.7 10.2 90 124-216 106-219 (361)
210 KOG4378 Nuclear protein COP1 [ 65.9 23 0.00049 38.6 7.7 98 242-355 187-284 (673)
211 KOG0645 WD40 repeat protein [G 65.0 94 0.002 31.6 11.4 106 277-402 20-135 (312)
212 KOG1188 WD40 repeat protein [G 64.3 50 0.0011 34.4 9.6 137 151-311 50-199 (376)
213 KOG0278 Serine/threonine kinas 63.8 47 0.001 33.4 9.0 190 220-464 103-299 (334)
214 KOG0647 mRNA export protein (c 63.3 13 0.00029 38.0 5.2 67 281-354 37-105 (347)
215 KOG0299 U3 snoRNP-associated p 62.5 72 0.0016 34.4 10.6 144 281-462 211-356 (479)
216 COG4946 Uncharacterized protei 61.8 1.9E+02 0.004 31.8 13.5 27 173-201 228-254 (668)
217 KOG0319 WD40-repeat-containing 60.6 84 0.0018 35.8 11.2 137 179-345 473-613 (775)
218 COG3391 Uncharacterized conser 60.4 1.9E+02 0.004 30.3 13.6 109 225-354 83-193 (381)
219 PF11822 DUF3342: Domain of un 59.7 4.6 0.0001 41.5 1.3 73 32-108 14-96 (317)
220 KOG0639 Transducin-like enhanc 59.5 57 0.0012 35.7 9.3 110 220-352 422-540 (705)
221 KOG0318 WD40 repeat stress pro 58.8 1.7E+02 0.0037 32.3 12.8 147 132-307 444-601 (603)
222 KOG0294 WD40 repeat-containing 57.6 2.3E+02 0.005 29.5 12.8 150 274-461 43-196 (362)
223 KOG0640 mRNA cleavage stimulat 56.3 21 0.00045 36.8 5.2 73 227-317 228-300 (430)
224 COG1520 FOG: WD40-like repeat 55.4 2.5E+02 0.0055 28.8 19.5 128 204-360 41-178 (370)
225 PF08662 eIF2A: Eukaryotic tra 54.6 45 0.00097 31.5 7.1 75 242-334 83-157 (194)
226 KOG2838 Uncharacterized conser 53.4 9.9 0.00021 38.3 2.4 76 23-100 131-217 (401)
227 KOG0647 mRNA export protein (c 52.4 81 0.0018 32.5 8.7 97 229-351 86-184 (347)
228 KOG1407 WD40 repeat protein [F 51.1 1.4E+02 0.003 30.3 9.9 108 276-404 69-179 (313)
229 KOG0772 Uncharacterized conser 50.2 50 0.0011 36.2 7.2 110 278-401 275-393 (641)
230 KOG1539 WD repeat protein [Gen 50.2 4.6E+02 0.01 30.7 14.9 103 227-352 172-276 (910)
231 KOG0289 mRNA splicing factor [ 50.0 34 0.00074 36.6 5.8 71 277-355 353-423 (506)
232 KOG1275 PAB-dependent poly(A) 49.5 46 0.001 38.9 7.1 93 242-355 157-258 (1118)
233 COG3823 Glutamine cyclotransfe 49.0 1.2E+02 0.0026 29.9 8.9 83 281-367 53-142 (262)
234 COG3823 Glutamine cyclotransfe 49.0 2.8E+02 0.006 27.5 12.9 82 178-273 53-138 (262)
235 KOG0303 Actin-binding protein 48.1 59 0.0013 34.5 7.2 68 276-354 136-206 (472)
236 KOG4649 PQQ (pyrrolo-quinoline 47.9 3.2E+02 0.007 27.9 21.6 212 201-463 36-258 (354)
237 smart00512 Skp1 Found in Skp1 46.9 11 0.00024 31.9 1.4 46 30-78 10-64 (104)
238 KOG0643 Translation initiation 46.6 3.4E+02 0.0073 27.7 12.8 140 241-401 73-227 (327)
239 KOG1188 WD40 repeat protein [G 46.5 50 0.0011 34.4 6.2 57 299-355 49-106 (376)
240 KOG0307 Vesicle coat complex C 46.3 28 0.00061 41.1 4.9 88 252-355 55-151 (1049)
241 KOG0279 G protein beta subunit 46.1 3.5E+02 0.0075 27.7 18.5 47 282-334 73-119 (315)
242 KOG0283 WD40 repeat-containing 45.9 66 0.0014 36.7 7.6 95 241-354 389-484 (712)
243 KOG0277 Peroxisomal targeting 45.5 20 0.00044 36.0 3.2 93 241-348 212-306 (311)
244 KOG2110 Uncharacterized conser 45.3 3.6E+02 0.0077 28.6 12.2 140 179-348 104-245 (391)
245 KOG0303 Actin-binding protein 44.7 1.1E+02 0.0025 32.5 8.5 62 241-319 153-214 (472)
246 KOG1332 Vesicle coat complex C 44.4 3E+02 0.0066 27.7 11.0 102 285-402 176-286 (299)
247 KOG4190 Uncharacterized conser 44.0 44 0.00094 37.0 5.6 121 223-363 790-918 (1034)
248 KOG1408 WD40 repeat protein [F 43.8 1.1E+02 0.0024 35.0 8.8 92 300-402 618-713 (1080)
249 KOG0292 Vesicle coat complex C 42.9 6.5E+02 0.014 30.0 16.9 40 277-323 256-295 (1202)
250 KOG1034 Transcriptional repres 42.8 64 0.0014 33.5 6.3 64 283-352 104-167 (385)
251 KOG0269 WD40 repeat-containing 42.1 1.8E+02 0.0039 33.5 10.1 148 176-352 141-297 (839)
252 KOG0293 WD40 repeat-containing 41.0 4E+02 0.0087 28.8 11.9 175 242-462 291-470 (519)
253 KOG3473 RNA polymerase II tran 40.3 50 0.0011 28.4 4.3 79 19-100 13-111 (112)
254 KOG4378 Nuclear protein COP1 [ 39.2 5.5E+02 0.012 28.5 12.7 71 278-354 171-242 (673)
255 KOG0296 Angio-associated migra 39.2 3.2E+02 0.0069 28.9 10.7 65 281-352 115-179 (399)
256 KOG0302 Ribosome Assembly prot 39.2 4.1E+02 0.0088 28.4 11.5 135 300-463 234-379 (440)
257 KOG1007 WD repeat protein TSSC 37.7 48 0.001 34.0 4.5 55 300-354 193-248 (370)
258 KOG0280 Uncharacterized conser 37.0 82 0.0018 32.3 6.0 53 298-355 186-245 (339)
259 PF03931 Skp1_POZ: Skp1 family 36.6 16 0.00036 28.0 0.9 49 25-76 3-58 (62)
260 PF14783 BBS2_Mid: Ciliary BBS 36.3 3E+02 0.0064 24.1 9.9 93 229-351 17-111 (111)
261 KOG1912 WD40 repeat protein [G 35.1 4.8E+02 0.01 30.5 12.0 70 275-351 113-186 (1062)
262 KOG0645 WD40 repeat protein [G 34.6 5.2E+02 0.011 26.4 13.8 104 180-317 72-188 (312)
263 KOG0306 WD40-repeat-containing 34.2 2.9E+02 0.0064 31.9 10.2 94 241-351 42-137 (888)
264 KOG0275 Conserved WD40 repeat- 34.1 1.8E+02 0.0038 30.4 7.9 87 299-396 369-460 (508)
265 PF02519 Auxin_inducible: Auxi 34.0 43 0.00093 28.7 3.1 51 21-75 37-99 (100)
266 PF08662 eIF2A: Eukaryotic tra 33.9 4E+02 0.0087 24.9 10.5 72 275-354 63-136 (194)
267 KOG0783 Uncharacterized conser 33.1 9.9 0.00021 43.7 -1.2 56 22-80 712-776 (1267)
268 KOG1274 WD40 repeat protein [G 32.9 6.3E+02 0.014 29.9 12.6 74 274-355 191-266 (933)
269 PF03178 CPSF_A: CPSF A subuni 32.7 5.2E+02 0.011 25.9 13.6 134 301-459 3-154 (321)
270 PF00400 WD40: WD domain, G-be 32.7 1.1E+02 0.0023 20.1 4.4 37 311-348 2-38 (39)
271 PRK04922 tolB translocation pr 32.4 4E+02 0.0087 28.1 10.9 74 275-353 207-282 (433)
272 KOG1274 WD40 repeat protein [G 31.4 9.4E+02 0.02 28.5 19.4 185 241-462 75-262 (933)
273 PF12926 MOZART2: Mitotic-spin 31.0 20 0.00044 30.0 0.6 21 61-81 39-59 (88)
274 KOG0306 WD40-repeat-containing 29.6 3.7E+02 0.0081 31.1 10.0 132 300-462 43-179 (888)
275 KOG2106 Uncharacterized conser 29.0 2.8E+02 0.0061 30.6 8.7 83 300-392 390-475 (626)
276 KOG1408 WD40 repeat protein [F 28.9 2.2E+02 0.0048 32.8 8.1 95 241-350 617-712 (1080)
277 KOG1273 WD40 repeat protein [G 28.7 4.4E+02 0.0096 27.6 9.6 68 229-317 36-104 (405)
278 KOG0268 Sof1-like rRNA process 28.7 64 0.0014 34.0 3.8 63 284-354 159-221 (433)
279 KOG4283 Transcription-coupled 28.1 2.7E+02 0.0058 28.9 7.9 31 274-310 191-221 (397)
280 KOG2714 SETA binding protein S 27.5 1.2E+02 0.0026 32.6 5.6 42 356-402 416-459 (465)
281 PRK01742 tolB translocation pr 26.8 7.6E+02 0.017 25.9 15.0 71 275-352 207-281 (429)
282 KOG4328 WD40 protein [Function 26.1 1.9E+02 0.0042 31.3 6.8 74 274-353 189-267 (498)
283 KOG1724 SCF ubiquitin ligase, 26.1 65 0.0014 30.0 3.1 83 23-108 5-119 (162)
284 KOG1310 WD40 repeat protein [G 25.1 1.6E+02 0.0035 32.8 6.1 108 227-352 61-179 (758)
285 PF08553 VID27: VID27 cytoplas 24.3 2.3E+02 0.005 33.1 7.6 41 299-340 597-638 (794)
286 KOG0322 G-protein beta subunit 24.0 1E+02 0.0023 31.2 4.2 56 133-188 253-312 (323)
287 PLN03219 uncharacterized prote 23.7 1.5E+02 0.0032 25.9 4.6 52 19-74 38-104 (108)
288 KOG2111 Uncharacterized conser 23.6 8.6E+02 0.019 25.4 14.7 177 211-448 49-241 (346)
289 PLN03215 ascorbic acid mannose 22.8 9.3E+02 0.02 25.5 12.6 121 208-349 190-336 (373)
290 PF14781 BBS2_N: Ciliary BBSom 22.2 1.9E+02 0.0041 26.3 5.1 61 241-317 72-134 (136)
291 KOG2110 Uncharacterized conser 21.9 3.2E+02 0.0069 28.9 7.3 80 242-334 106-187 (391)
292 KOG0650 WD40 repeat nucleolar 20.6 2.4E+02 0.0051 31.8 6.4 133 241-402 545-680 (733)
293 PF03835 Rad4: Rad4 transgluta 20.4 1.8E+02 0.004 26.0 4.8 49 301-352 38-93 (145)
294 KOG1275 PAB-dependent poly(A) 20.3 5.9E+02 0.013 30.3 9.6 146 177-344 183-335 (1118)
295 KOG1240 Protein kinase contain 20.2 4.2E+02 0.0091 32.5 8.6 60 299-359 1172-1233(1431)
No 1
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=100.00 E-value=4e-57 Score=457.09 Aligned_cols=430 Identities=26% Similarity=0.312 Sum_probs=347.7
Q ss_pred CCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------C---ceeEcCCchhHHHHhcccccCccccCCCCcChH
Q 012294 20 IDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------T---HRFIDRDPELFSILLSLLRTGNLPSKAKAFDIE 90 (466)
Q Consensus 20 ~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~---~~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~ 90 (466)
.+.++|+|||||++|+|+++||+.+.+||||.+|+++ + .+||||||++|..||||||||+|++ +..+..+
T Consensus 8 ~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~-~g~~~~~ 86 (465)
T KOG2714|consen 8 SSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDA-SGVFPER 86 (465)
T ss_pred CCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCC-ccCchhh
Confidence 3468999999999999999999996559999999974 2 2899999999999999999999998 5567778
Q ss_pred HHHHhhccccchhhHHhhcCCCCCCcccccccccccCCCCCCCCCcee-eecCCcEEEEcCCceeeEecCCCCCCCcccc
Q 012294 91 DLIEESKFYNIESLLINSQSNPSQFDAFSLEKSLILPLNGRDSPSAIA-TTNYGTLHVSHGSKITSFDWSMRKKSTILTH 169 (466)
Q Consensus 91 ~Ll~EA~f~~l~~l~~~~~~~p~~~~~~~l~~va~l~~~~R~~~~a~~-a~~~g~lyva~GG~ve~YDW~~a~m~~~R~~ 169 (466)
+|.+||.||||.++++.+.+.+.+|+++++....++.+.++....++. +.++..|++|||+.+.+|||++....+.+++
T Consensus 87 llhdEA~fYGl~~llrrl~~~~~~F~Gf~~~~s~~~~~~~~g~g~ai~~~~p~~~l~~AHg~~va~~dw~l~~~~tv~~~ 166 (465)
T KOG2714|consen 87 LLHDEAMFYGLTPLLRRLTLCEELFDGFDLSLSRSVTGNAPGSGSAIRSAGPDVGLIVAHGIVVAYFDWSLEYRSTVNTG 166 (465)
T ss_pred hhhhhhhhcCcHHHHHHhhcCcccccccccccchhhccCCCCCCccccccCCCceEEEecccEEEEEEEEEEeecccccC
Confidence 888899999999999977666667999998888877767777777776 5678899999999999999999778888999
Q ss_pred ceeeeeecccCCcEEEEecccCCCceeccc-eeeeeCCCCceeecCCCCCceeEEEEECC---eEEEEecC--CCcCCCe
Q 012294 170 FTAVDSLLALSPGVAAAGATDFSGLQVLDL-ENGYVKETLNWENVTRSSSTVQAIGSSDK---HLFVSFES--GRRNSNS 243 (466)
Q Consensus 170 ~~~v~sl~~l~~~lYaiGG~~~~g~~~l~s-vE~ydp~t~~W~~va~Mr~~~~Ava~l~~---~IYaGg~~--g~~~l~s 243 (466)
+..+.++..++..+.++|.++..|.+.... +-..--.+..|+.+..-+....++..++. .+|.-|.+ .......
T Consensus 167 ~q~V~s~~~id~~~~~ia~~~k~g~~~~~~~~~~s~~~~l~W~~q~~~~~~~~~v~s~~~s~~~~F~i~~~l~~~s~~~~ 246 (465)
T KOG2714|consen 167 YQLVFSSPRIDSGIEAIAANSKVGLGDAGLLVAGSSSGSLLWKIQEEGSNTVKGVFSLAVSVDPLFFIGTQLVALSSVGK 246 (465)
T ss_pred hhhhhccccccchhheeeecccccccccccccceeecceeeEeeccCCCcceEEEEeecccccchhhhhhhhhhcccccc
Confidence 999999999999999999876655543221 22333344789988766333333444443 34442221 1122345
Q ss_pred eEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe--eeeEEcCCcc
Q 012294 244 IMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN--VAWEVKDEVD 321 (466)
Q Consensus 244 VE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~vW~~~~~~d 321 (466)
|.+|++.| +..+...+.++.|++.++.||+|+...++|.+++-+-...+.+++|..||+|+.+ .+|+.++.++
T Consensus 247 Igvw~~~t-----~q~~d~~~~s~~dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n~~~~W~~i~~gt 321 (465)
T KOG2714|consen 247 IGVWHAVT-----QQAQDVQPISSYDSAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRNTSGNWIEIAYGT 321 (465)
T ss_pred ccccchhh-----hceeeeeeccCccccCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCCccceEEEecCCc
Confidence 55555555 4233333488999999999999999999999999998888999999999999999 7788888888
Q ss_pred cccceeeec--------CCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294 322 CFSDVTVSD--------NLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG 393 (466)
Q Consensus 322 ~~~~~~v~~--------~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~ 393 (466)
++.++.|.+ .-...++.+++.+.|.++|+|+.+ .++|+++..++|.|..|.++ +..++||..+.....+
T Consensus 322 ~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~~idv~~~~-~~~~~~~~tr~rGm~s~~pg--~~~~~s~k~l~Le~~~ 398 (465)
T KOG2714|consen 322 SSGEVRVIDQHPETVGVGPCLFQTFEVHGSPLGLIDVCSDG-GHVRVWNSTRFRGMISTQPG--STPEASFKKLALEEGD 398 (465)
T ss_pred cccceEeeeccccccCCCCeEEEEEEecCCCcceeehhhhC-CcceEEeecccccccccCCC--CCcccccceeeehhcc
Confidence 888776666 334456788899999999999988 79999999999999975554 4899999999999999
Q ss_pred CeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCCCCC
Q 012294 394 GEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSRGF 466 (466)
Q Consensus 394 ~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~~~~ 466 (466)
+..++|++. +. +...++-=++||++|+.++.+|+|+++++||||||++|+++++|+|||+++.++
T Consensus 399 ~~~s~~~gN----d~----~~~gd~~d~~vfi~Kl~~s~~~~i~~ls~gGdRlfv~rs~~~~v~vw~~~~~~g 463 (465)
T KOG2714|consen 399 EFSSMSSGN----DS----GPVGDGDDQQVFIQKLVPSAGGLIVRLSSGGDRLFVVRSVESPVTVWEVLECEG 463 (465)
T ss_pred ccceeeecc----cc----cccCCchhhhhhhhhhccccCCcEEEEecCCeeEEEEEeccCceeEEEecCCCC
Confidence 999999997 22 233333336999999999999999999999999999999999999999998764
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1e-48 Score=424.44 Aligned_cols=332 Identities=20% Similarity=0.268 Sum_probs=282.6
Q ss_pred CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC-------Cc-eeEcCCchhHHHHhcccccCccccCCCCcChHHHH
Q 012294 22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-------TH-RFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLI 93 (466)
Q Consensus 22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-------~~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll 93 (466)
--+|+|.|+++.|.+||.+|+++ ++||++||++ +. .+.+.||+.++.||+|+|||++.+. +.++++|+
T Consensus 36 lcDv~L~v~~~~~~aHR~VLAa~--S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~--~~nVq~ll 111 (571)
T KOG4441|consen 36 LCDVTLLVGDREFPAHRVVLAAC--SPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEIS--EDNVQELL 111 (571)
T ss_pred CceEEEEECCeeechHHHHHHhc--cHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEec--hHhHHHHH
Confidence 35899999999999999999984 5599999996 12 4889999999999999999999986 68999999
Q ss_pred HhhccccchhhHHhh------cCCCCCCcc--------------------------------------------------
Q 012294 94 EESKFYNIESLLINS------QSNPSQFDA-------------------------------------------------- 117 (466)
Q Consensus 94 ~EA~f~~l~~l~~~~------~~~p~~~~~-------------------------------------------------- 117 (466)
+.|.+|||..++++| +++|+||++
T Consensus 112 ~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d~ 191 (571)
T KOG4441|consen 112 EAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSDD 191 (571)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhccccC
Confidence 999999999999998 455655440
Q ss_pred -----------------------------------------------------------------cccccccccCCCCCC
Q 012294 118 -----------------------------------------------------------------FSLEKSLILPLNGRD 132 (466)
Q Consensus 118 -----------------------------------------------------------------~~l~~va~l~~~~R~ 132 (466)
.++.....++ ..+.
T Consensus 192 l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~-~~~~ 270 (571)
T KOG4441|consen 192 LNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLP-QRRP 270 (571)
T ss_pred CCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCc-ccCc
Confidence 0111122233 3332
Q ss_pred CCCceeeec----CCcEEEEcCCc---------eeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCC-
Q 012294 133 SPSAIATTN----YGTLHVSHGSK---------ITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFS- 192 (466)
Q Consensus 133 ~~~a~~a~~----~g~lyva~GG~---------ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~- 192 (466)
......+.+ .+.||++ ||. +++|| |.. ++|+.+|.++++++ +++.|||+|| ++
T Consensus 271 ~~~~~~t~~r~~~~~~l~~v-GG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~----~~~~lYv~GG--~~~ 343 (571)
T KOG4441|consen 271 VMQSPRTRPRRSVSGKLVAV-GGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV----LNGKLYVVGG--YDS 343 (571)
T ss_pred cccCCCcccCcCCCCeEEEE-CCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE----ECCEEEEEcc--ccC
Confidence 222223333 4788854 553 47899 999 99999999998888 9999999999 88
Q ss_pred CceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCc
Q 012294 193 GLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDI 268 (466)
Q Consensus 193 g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~ 268 (466)
|...++++|+|||.+|+|+.+++| |..++ +++++|+||| ||.+|...+++||+|||.| |.
T Consensus 344 ~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~~l~g~iYavGG~dg~~~l~svE~YDp~~---------------~~ 407 (571)
T KOG4441|consen 344 GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VAVLDGKLYAVGGFDGEKSLNSVECYDPVT---------------NK 407 (571)
T ss_pred CCcccceEEEecCCCCceeccCCccCccccce-eEEECCEEEEEeccccccccccEEEecCCC---------------Cc
Confidence 899999999999999999999999 77776 9999999999 9998988899999999999 88
Q ss_pred eeecCcceee-----EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEee
Q 012294 269 ESAIPATKLR-----WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINS 342 (466)
Q Consensus 269 w~~~~~~k~~-----~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~ 342 (466)
|+.+++|... ..+++|+||++||+++....+.+||+|||++|+ |+..++ ..+|..+++...+..||+||+++
T Consensus 408 W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 408 WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSGFGVAVLNGKIYVVGGFD 485 (571)
T ss_pred ccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccccccceEEEECCEEEEECCcc
Confidence 9999988553 456999999999999988778899999999999 999999 78899999999999999999999
Q ss_pred CceeEeeccccCC----CCCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294 343 GEVSYMDLRKLGD----SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG 393 (466)
Q Consensus 343 g~l~~~dlr~~~~----~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~ 393 (466)
|+ ..|+++|+ +|.|..+++ |+. +| +++.+++.+|+||+.-|
T Consensus 486 ~~---~~~~~VE~ydp~~~~W~~v~~----m~~--~r-s~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 486 GT---SALSSVERYDPETNQWTMVAP----MTS--PR-SAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CC---CccceEEEEcCCCCceeEccc----Ccc--cc-ccccEEEECCEEEEEec
Confidence 96 78888886 899999998 884 67 99999999999999977
No 3
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-40 Score=355.98 Aligned_cols=304 Identities=15% Similarity=0.181 Sum_probs=244.0
Q ss_pred CCeEEEEEC-CeEEEEeHHHhhccCCCCccccccCC-----C---ce-eEcCCchhHHHHhcccccCccccCCCCcChHH
Q 012294 22 SNIVTIDVG-GQIFQTTKQTLALAGPKSLLSKLADS-----T---HR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIED 91 (466)
Q Consensus 22 ~~~V~LnVG-G~~F~t~~~tL~~~~p~s~f~~mf~~-----~---~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~ 91 (466)
--+|+|.|+ |+.|.+||.+|++ .++||++||++ + ++ +.+.+++.|+.||+|+|||+|. ..++++
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa--~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i~----~~nv~~ 98 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAA--GSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHIS----SMNVID 98 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhh--cCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCCCC----HHHHHH
Confidence 458999998 8999999999998 45699999985 1 23 7789999999999999999853 368999
Q ss_pred HHHhhccccchhhHHhh------cCCCCCCcc------------------------------------------------
Q 012294 92 LIEESKFYNIESLLINS------QSNPSQFDA------------------------------------------------ 117 (466)
Q Consensus 92 Ll~EA~f~~l~~l~~~~------~~~p~~~~~------------------------------------------------ 117 (466)
||..|.+|||+.++++| +++++||.+
T Consensus 99 ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l~~lL~~ 178 (557)
T PHA02713 99 VLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEILFDIIST 178 (557)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHHHHHhcc
Confidence 99999999999999988 233333220
Q ss_pred ---------------------cc----------c----------------------------------------------
Q 012294 118 ---------------------FS----------L---------------------------------------------- 120 (466)
Q Consensus 118 ---------------------~~----------l---------------------------------------------- 120 (466)
.+ +
T Consensus 179 d~~l~v~~Ee~v~eav~~W~~~d~~~r~~~~~ll~~VR~~~l~~~~~~~~~~~~~i~~~~~c~~~l~~a~~~~~~~~r~~ 258 (557)
T PHA02713 179 NDNVYLYREGYKVTILLKWLEYNYITEEQLLCILSCIDIQNLDKKSRLLLYSNKTINMYPSCIQFLLDNKQNRNIIPRQL 258 (557)
T ss_pred ccccCCCcHHHHHHHHHHHHhcCHHHHHHHhhhHhhhhHhhcchhhhhhhcchHHHHhhHHHHHHHhhhhhhcccCCcce
Confidence 00 0
Q ss_pred --------------------------ccccccCCCCCCCCCceeeecCCcEEEEcCC--------ceeeEe-----cCC-
Q 012294 121 --------------------------EKSLILPLNGRDSPSAIATTNYGTLHVSHGS--------KITSFD-----WSM- 160 (466)
Q Consensus 121 --------------------------~~va~l~~~~R~~~~a~~a~~~g~lyva~GG--------~ve~YD-----W~~- 160 (466)
..+++|+ .+|..++ ++++++.||+++|- .+++|| |..
T Consensus 259 ~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp-~~r~~~~--~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~ 335 (557)
T PHA02713 259 CLVCHDTKYNVCNPCILVYNINTMEYSVISTIP-NHIINYA--SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVEL 335 (557)
T ss_pred EEEEecCccccCCCCEEEEeCCCCeEEECCCCC-ccccceE--EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeC
Confidence 0011233 3333344 57789999976551 157899 999
Q ss_pred CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecC
Q 012294 161 RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFES 236 (466)
Q Consensus 161 a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~ 236 (466)
++|+.+|..+++++ ++++|||+|| .++...++++|+|||.+++|+.+++| |+.++ +++++|+||+ ||.+
T Consensus 336 ~~m~~~R~~~~~~~----~~g~IYviGG--~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~-~~~~~g~IYviGG~~ 408 (557)
T PHA02713 336 PPMIKNRCRFSLAV----IDDTIYAIGG--QNGTNVERTIECYTMGDDKWKMLPDMPIALSSYG-MCVLDQYIYIIGGRT 408 (557)
T ss_pred CCCcchhhceeEEE----ECCEEEEECC--cCCCCCCceEEEEECCCCeEEECCCCCccccccc-EEEECCEEEEEeCCC
Confidence 99999999998887 9999999999 77777789999999999999999999 66665 7899999999 8865
Q ss_pred CC------------------cCCCeeEEEecCCCCccccccccccccCCceeecCcceee-----EEeeCCeEEEEeecC
Q 012294 237 GR------------------RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR-----WVSSYNLLLASGSHS 293 (466)
Q Consensus 237 g~------------------~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~-----~~~~~~~Lyv~Gg~~ 293 (466)
+. ..+++||+|||++ ++|+.+++|... .+.++|.|||+||++
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t---------------d~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~ 473 (557)
T PHA02713 409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN---------------NIWETLPNFWTGTIRPGVVSHKDDIYVVCDIK 473 (557)
T ss_pred cccccccccccccccccccccccceEEEECCCC---------------CeEeecCCCCcccccCcEEEECCEEEEEeCCC
Confidence 32 1268999999999 778888888543 456899999999988
Q ss_pred CCCcccceEEEEeCCC-CeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCC----CCCeEEecc
Q 012294 294 DISKVTGNIKFWDIRS-GNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD----SSEWICLGD 364 (466)
Q Consensus 294 g~~~~~~sVe~yDprt-~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~----~~~W~~~~~ 364 (466)
+......+||+|||++ |+ |+...+ ..+|..+++...++.||++|+++|. .++|+ +|+|..+++
T Consensus 474 ~~~~~~~~ve~Ydp~~~~~--W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~------~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 474 DEKNVKTCIFRYNTNTYNG--WELITTTESRLSALHTILHDNTIMMLHCYESY------MLQDTFNVYTYEWNHICH 542 (557)
T ss_pred CCCccceeEEEecCCCCCC--eeEccccCcccccceeEEECCEEEEEeeecce------eehhhcCcccccccchhh
Confidence 7554556799999999 89 999887 4577888999999999999999994 35665 899999998
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=6.4e-36 Score=319.13 Aligned_cols=295 Identities=12% Similarity=0.086 Sum_probs=224.3
Q ss_pred CeEEEEECCeEEEEeHHHhhccCCCCccccccCC------Cce-e--EcCCchhHHHHhcccccCccccCCCCcChHHHH
Q 012294 23 NIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------THR-F--IDRDPELFSILLSLLRTGNLPSKAKAFDIEDLI 93 (466)
Q Consensus 23 ~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~~~-f--iDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll 93 (466)
.+|. -|.|+.|++||.+|++ .++||++||++ +.+ . +|.|++.|+.||+|+|||+|.++ ..|+++|+
T Consensus 23 ~~~~-~~~~~~~~~HR~VLAa--~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~it--~~nV~~ll 97 (480)
T PHA02790 23 KTII-EAIGGNIIVNSTILKK--LSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYID--SHNVVNLL 97 (480)
T ss_pred ceEE-EEcCcEEeeehhhhhh--cCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEEe--cccHHHHH
Confidence 3554 4556699999999998 45699999986 223 3 38999999999999999999996 57899999
Q ss_pred HhhccccchhhHHhh------cCCCCCCcc--------------------------------------------------
Q 012294 94 EESKFYNIESLLINS------QSNPSQFDA-------------------------------------------------- 117 (466)
Q Consensus 94 ~EA~f~~l~~l~~~~------~~~p~~~~~-------------------------------------------------- 117 (466)
+.|.+|||+.++++| +++++||++
T Consensus 98 ~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~lLssd~L 177 (480)
T PHA02790 98 RASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLILESDEL 177 (480)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHhcccccC
Confidence 999999999999998 344444330
Q ss_pred --------------------c---c-cc---c-ccc--c--------------------CCCCCC---------------
Q 012294 118 --------------------F---S-LE---K-SLI--L--------------------PLNGRD--------------- 132 (466)
Q Consensus 118 --------------------~---~-l~---~-va~--l--------------------~~~~R~--------------- 132 (466)
. . ++ . +.. | ...+|.
T Consensus 178 ~v~~Ee~V~eav~~Wl~~~~~~~~~l~~~vr~~ir~~~l~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 257 (480)
T PHA02790 178 NVPDEDYVVDFVIKWYMKRRNRLGNLLLLIKNVIRSNYLSPRGINNVKWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQ 257 (480)
T ss_pred CCccHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCChhhCCHHHHHHHHHHHHHHHHhhccccccccccccccccCCcccc
Confidence 0 0 00 0 000 0 000111
Q ss_pred ----CCCceeeecCCcEEEEcCC-------ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCCCce
Q 012294 133 ----SPSAIATTNYGTLHVSHGS-------KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQ 195 (466)
Q Consensus 133 ----~~~a~~a~~~g~lyva~GG-------~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~ 195 (466)
...+.++.+++.||+++|. .+++|| |.. ++|+.+|..+++++ ++++|||+|| .++
T Consensus 258 ~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~----~~~~iYviGG--~~~-- 329 (480)
T PHA02790 258 IIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP----ANNKLYVVGG--LPN-- 329 (480)
T ss_pred eeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE----ECCEEEEECC--cCC--
Confidence 0001123478999966441 257899 999 99999999988877 9999999999 653
Q ss_pred eccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceee
Q 012294 196 VLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESA 271 (466)
Q Consensus 196 ~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~ 271 (466)
.+++|+|||.+|+|+.+++| |..++ +++++|+||| ||.++. .+++|+|||.+ +.|+.
T Consensus 330 -~~sve~ydp~~n~W~~~~~l~~~r~~~~-~~~~~g~IYviGG~~~~--~~~ve~ydp~~---------------~~W~~ 390 (480)
T PHA02790 330 -PTSVERWFHGDAAWVNMPSLLKPRCNPA-VASINNVIYVIGGHSET--DTTTEYLLPNH---------------DQWQF 390 (480)
T ss_pred -CCceEEEECCCCeEEECCCCCCCCcccE-EEEECCEEEEecCcCCC--CccEEEEeCCC---------------CEEEe
Confidence 26899999999999999999 65555 7999999999 887543 57899999999 77888
Q ss_pred cCcceee-----EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCce
Q 012294 272 IPATKLR-----WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEV 345 (466)
Q Consensus 272 ~~~~k~~-----~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l 345 (466)
+++|... .+.++|.|||+|| .+|+|||++|+ |+..++ ..++..+++...++.||++||.++.
T Consensus 391 ~~~m~~~r~~~~~~~~~~~IYv~GG---------~~e~ydp~~~~--W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~- 458 (480)
T PHA02790 391 GPSTYYPHYKSCALVFGRRLFLVGR---------NAEFYCESSNT--WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRG- 458 (480)
T ss_pred CCCCCCccccceEEEECCEEEEECC---------ceEEecCCCCc--EeEcCCCCCCccccEEEEECCEEEEECCcCCC-
Confidence 8887543 3468999999997 38999999999 999877 4467888889999999999998754
Q ss_pred eEeeccccCC----CCCeEEec
Q 012294 346 SYMDLRKLGD----SSEWICLG 363 (466)
Q Consensus 346 ~~~dlr~~~~----~~~W~~~~ 363 (466)
..+.+++. +|.|..|-
T Consensus 459 --~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 459 --SYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred --cccceEEEEECCCCeEEecC
Confidence 22455554 78888664
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.9e-35 Score=318.53 Aligned_cols=213 Identities=20% Similarity=0.273 Sum_probs=188.8
Q ss_pred ccccccCCCCCCCCCceeeecCCcEEEEcC---C-----ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEE
Q 012294 121 EKSLILPLNGRDSPSAIATTNYGTLHVSHG---S-----KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAA 186 (466)
Q Consensus 121 ~~va~l~~~~R~~~~a~~a~~~g~lyva~G---G-----~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYai 186 (466)
..+++|+ .+|..++ +++++|.||+++| | .+++|| |+. ++|+++|..+++++ ++|.|||+
T Consensus 314 ~~~a~m~-~~r~~~~--~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~----l~g~iYav 386 (571)
T KOG4441|consen 314 SSLAPMP-SPRCRVG--VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV----LDGKLYAV 386 (571)
T ss_pred eecCCCC-ccccccc--EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE----ECCEEEEE
Confidence 4567888 8899888 8999999996654 1 257899 999 99999999999998 99999999
Q ss_pred ecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCc-CCCeeEEEecCCCCcccccccc
Q 012294 187 GATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRR-NSNSIMVYDINSLKPVNEIGQN 261 (466)
Q Consensus 187 GG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~-~l~sVE~YDp~t~~~~~~~~~~ 261 (466)
|| ++|...++++|+|||.+|+|+.+++| |.+++ +|+++++||+ ||.++.. .+++||+|||.|
T Consensus 387 GG--~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~g-v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t---------- 453 (571)
T KOG4441|consen 387 GG--FDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHG-VAVLGGKLYIIGGGDGSSNCLNSVECYDPET---------- 453 (571)
T ss_pred ec--cccccccccEEEecCCCCcccccCCCCcceeeeE-EEEECCEEEEEcCcCCCccccceEEEEcCCC----------
Confidence 99 99999999999999999999999999 55555 9999999999 8876766 799999999999
Q ss_pred ccccCCceeecCcceee-----EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCce
Q 012294 262 EIYGTDIESAIPATKLR-----WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAI 335 (466)
Q Consensus 262 ~~~~~~~w~~~~~~k~~-----~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i 335 (466)
|.|+.+++|+.. .+.+++.|||+||++|.+ ...+||+|||++|+ |+...+ ..+++.+++...++.|
T Consensus 454 -----~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~-~~~~VE~ydp~~~~--W~~v~~m~~~rs~~g~~~~~~~l 525 (571)
T KOG4441|consen 454 -----NTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS-ALSSVERYDPETNQ--WTMVAPMTSPRSAVGVVVLGGKL 525 (571)
T ss_pred -----CceeecCCcccccccceEEEECCEEEEECCccCCC-ccceEEEEcCCCCc--eeEcccCccccccccEEEECCEE
Confidence 778888888553 557999999999999954 55689999999999 999876 6688899999999999
Q ss_pred EEEEEeeCceeEeeccccCC----CCCeEEecc
Q 012294 336 YKVGINSGEVSYMDLRKLGD----SSEWICLGD 364 (466)
Q Consensus 336 ~~v~~~~g~l~~~dlr~~~~----~~~W~~~~~ 364 (466)
|+||+.+|. .+|.+++. .|.|....+
T Consensus 526 y~vGG~~~~---~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 526 YAVGGFDGN---NNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred EEEecccCc---cccceeEEcCCCCCceeeCCC
Confidence 999999999 88888886 899999988
No 6
>PHA03098 kelch-like protein; Provisional
Probab=99.98 E-value=5e-31 Score=283.97 Aligned_cols=331 Identities=14% Similarity=0.136 Sum_probs=232.2
Q ss_pred CeEEEEE--CCeEEEEeHHHhhccCCCCccccccCC----Cce-eEcCCchhHHHHhcccccCccccCCCCcChHHHHHh
Q 012294 23 NIVTIDV--GGQIFQTTKQTLALAGPKSLLSKLADS----THR-FIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEE 95 (466)
Q Consensus 23 ~~V~LnV--GG~~F~t~~~tL~~~~p~s~f~~mf~~----~~~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~E 95 (466)
-+|+|.| +|+.|.+||.+|++ .++||++||++ +.+ +.+ +++.|+.||+|+|||++.+. ..++++|+..
T Consensus 10 ~Dv~l~~~~~~~~~~~Hk~vLaa--~S~yF~~mf~~~~~~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~--~~~~~~ll~~ 84 (534)
T PHA03098 10 CDESIIIVNGGGIIKVHKIILSS--SSEYFKKMFKNNFKENEINLNI-DYDSFNEVIKYIYTGKINIT--SNNVKDILSI 84 (534)
T ss_pred CCEEEEEEcCCEEEEeHHHHHHh--hhHHHHHHHhCCCCCceEEecC-CHHHHHHHHHHhcCCceEEc--HHHHHHHHHH
Confidence 4666666 99999999999998 45699999987 234 667 99999999999999999985 4679999999
Q ss_pred hccccchhhHHhh------cCCCCCCc------------------------------------c----------------
Q 012294 96 SKFYNIESLLINS------QSNPSQFD------------------------------------A---------------- 117 (466)
Q Consensus 96 A~f~~l~~l~~~~------~~~p~~~~------------------------------------~---------------- 117 (466)
|.+|||+.|.+.| .+++.||. .
T Consensus 85 A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~~L~ 164 (534)
T PHA03098 85 ANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDDKLN 164 (534)
T ss_pred HHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCCCcC
Confidence 9999999999888 22332211 0
Q ss_pred --------------------cc-------ccccc----------------------ccCCCCCCCC-----------Cce
Q 012294 118 --------------------FS-------LEKSL----------------------ILPLNGRDSP-----------SAI 137 (466)
Q Consensus 118 --------------------~~-------l~~va----------------------~l~~~~R~~~-----------~a~ 137 (466)
.+ ++.+. .+....++.. ...
T Consensus 165 v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (534)
T PHA03098 165 VSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILP 244 (534)
T ss_pred cCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCc
Confidence 00 00000 0000000000 000
Q ss_pred -eeecCCcEEEEcCC-----ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCCCc-eeccceeeee
Q 012294 138 -ATTNYGTLHVSHGS-----KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGL-QVLDLENGYV 204 (466)
Q Consensus 138 -~a~~~g~lyva~GG-----~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~-~~l~svE~yd 204 (466)
.-.....+++++|+ ...+|+ |.. ++++. +..+++++ +++.||++|| .++. ...+.+.+||
T Consensus 245 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~lyv~GG--~~~~~~~~~~v~~yd 317 (534)
T PHA03098 245 RSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHY-VYCFGSVV----LNNVIYFIGG--MNKNNLSVNSVVSYD 317 (534)
T ss_pred CccCCCcceEeecccchhhceeeecchhhhhcccccCccc-cccceEEE----ECCEEEEECC--CcCCCCeeccEEEEe
Confidence 00112345544443 234566 544 43332 34456666 9999999999 5543 3467899999
Q ss_pred CCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceee--
Q 012294 205 KETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR-- 278 (466)
Q Consensus 205 p~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~-- 278 (466)
|.+++|..+++| |..++ +++++++||+ ||.++...++++|+|||.+ ++|+.+++|...
T Consensus 318 ~~~~~W~~~~~~~~~R~~~~-~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~---------------~~W~~~~~lp~~r~ 381 (534)
T PHA03098 318 TKTKSWNKVPELIYPRKNPG-VTVFNNRIYVIGGIYNSISLNTVESWKPGE---------------SKWREEPPLIFPRY 381 (534)
T ss_pred CCCCeeeECCCCCcccccce-EEEECCEEEEEeCCCCCEecceEEEEcCCC---------------CceeeCCCcCcCCc
Confidence 999999999999 66665 7899999999 9876555589999999999 668877766432
Q ss_pred ---EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCc--------ee
Q 012294 279 ---WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGE--------VS 346 (466)
Q Consensus 279 ---~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~--------l~ 346 (466)
.+..+|.||++||.+.....+++||+|||.+++ |+..++ -.++...++...++.||.+|+.++. ++
T Consensus 382 ~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 459 (534)
T PHA03098 382 NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVE 459 (534)
T ss_pred cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEE
Confidence 345899999999975544456789999999999 999876 3345555666778899999996543 22
Q ss_pred EeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeCC
Q 012294 347 YMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGG 394 (466)
Q Consensus 347 ~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~ 394 (466)
.-|.. .+.|..+++ |.. +| .+..+++++|.||+..|.
T Consensus 460 ~yd~~----~~~W~~~~~----~~~--~r-~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 460 SYNPV----TNKWTELSS----LNF--PR-INASLCIFNNKIYVVGGD 496 (534)
T ss_pred EecCC----CCceeeCCC----CCc--cc-ccceEEEECCEEEEEcCC
Confidence 33322 688999987 663 56 677788899999998764
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=259.82 Aligned_cols=208 Identities=12% Similarity=0.144 Sum_probs=171.5
Q ss_pred eeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCC-CceeccceeeeeCCCCceeecCCC---CCceeE
Q 012294 153 ITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFS-GLQVLDLENGYVKETLNWENVTRS---SSTVQA 222 (466)
Q Consensus 153 ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~-g~~~l~svE~ydp~t~~W~~va~M---r~~~~A 222 (466)
+++|| |.. ++|+.+|..+++++ ++++||++|| .+ +...++++++|||.+++|..+++| |+.++
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~----l~~~IYviGG--~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~- 346 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHIINYASAI----VDNEIIIAGG--YNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS- 346 (557)
T ss_pred EEEEeCCCCeEEECCCCCccccceEEEE----ECCEEEEEcC--CCCCCCccceEEEEECCCCeEeeCCCCcchhhcee-
Confidence 47899 998 99999999888877 9999999999 54 334578999999999999999999 66666
Q ss_pred EEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCccee-----eEEeeCCeEEEEeecCCCC
Q 012294 223 IGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL-----RWVSSYNLLLASGSHSDIS 296 (466)
Q Consensus 223 va~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~-----~~~~~~~~Lyv~Gg~~g~~ 296 (466)
+++++|+||| ||.++...+++||+|||.+ +.|+.+++|.. +.+.++|.|||+||.++..
T Consensus 347 ~~~~~g~IYviGG~~~~~~~~sve~Ydp~~---------------~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~ 411 (557)
T PHA02713 347 LAVIDDTIYAIGGQNGTNVERTIECYTMGD---------------DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHI 411 (557)
T ss_pred EEEECCEEEEECCcCCCCCCceEEEEECCC---------------CeEEECCCCCcccccccEEEECCEEEEEeCCCccc
Confidence 8999999999 8886665689999999999 77888887744 3456899999999987531
Q ss_pred -----------------cccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCC---
Q 012294 297 -----------------KVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD--- 355 (466)
Q Consensus 297 -----------------~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~--- 355 (466)
..+.+||+|||++|+ |+..++ ..++...++...++.||++|+.++.-. .++++++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~--~~~~ve~Ydp 487 (557)
T PHA02713 412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN--VKTCIFRYNT 487 (557)
T ss_pred ccccccccccccccccccccceEEEECCCCCe--EeecCCCCcccccCcEEEECCEEEEEeCCCCCCc--cceeEEEecC
Confidence 125689999999999 999888 456677788889999999999875421 1234454
Q ss_pred -C-CCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294 356 -S-SEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG 393 (466)
Q Consensus 356 -~-~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~ 393 (466)
+ |.|..+++ |.. +| .++.+++++|.||+..|
T Consensus 488 ~~~~~W~~~~~----m~~--~r-~~~~~~~~~~~iyv~Gg 520 (557)
T PHA02713 488 NTYNGWELITT----TES--RL-SALHTILHDNTIMMLHC 520 (557)
T ss_pred CCCCCeeEccc----cCc--cc-ccceeEEECCEEEEEee
Confidence 5 79999998 884 77 89999999999999977
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.92 E-value=1e-23 Score=215.27 Aligned_cols=237 Identities=13% Similarity=0.086 Sum_probs=167.1
Q ss_pred cccCCCCCCCCCceeeecCCcEEEEcCCc----eeeEe-------cCC-CCCC-CccccceeeeeecccCCcEEEEeccc
Q 012294 124 LILPLNGRDSPSAIATTNYGTLHVSHGSK----ITSFD-------WSM-RKKS-TILTHFTAVDSLLALSPGVAAAGATD 190 (466)
Q Consensus 124 a~l~~~~R~~~~a~~a~~~g~lyva~GG~----ve~YD-------W~~-a~m~-~~R~~~~~v~sl~~l~~~lYaiGG~~ 190 (466)
++|| .+|...+ +|++++.||++ ||. ..+|| |.. ++|+ .+|..+++++ ++++||++||
T Consensus 2 ~~lp-~~~~~~~--~~~~~~~vyv~-GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~----~~~~iYv~GG-- 71 (346)
T TIGR03547 2 PDLP-VGFKNGT--GAIIGDKVYVG-LGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA----IDGKLYVFGG-- 71 (346)
T ss_pred CCCC-ccccCce--EEEECCEEEEE-ccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE----ECCEEEEEeC--
Confidence 3566 6777655 67889999966 553 45666 998 9998 5888887776 9999999999
Q ss_pred CCC------ceeccceeeeeCCCCceeecCC-C-C--CceeEEEEECCeEEE-EecCCCc--------------------
Q 012294 191 FSG------LQVLDLENGYVKETLNWENVTR-S-S--STVQAIGSSDKHLFV-SFESGRR-------------------- 239 (466)
Q Consensus 191 ~~g------~~~l~svE~ydp~t~~W~~va~-M-r--~~~~Ava~l~~~IYa-Gg~~g~~-------------------- 239 (466)
... ...++.+|+|||.+++|+.+++ | | ..++++++++++||| ||.++..
T Consensus 72 ~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 72 IGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred CCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 532 2357899999999999999974 4 3 334333478999999 8864320
Q ss_pred --------------CCCeeEEEecCCCCccccccccccccCCceeecCccee------eEEeeCCeEEEEeecCCCCccc
Q 012294 240 --------------NSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL------RWVSSYNLLLASGSHSDISKVT 299 (466)
Q Consensus 240 --------------~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~------~~~~~~~~Lyv~Gg~~g~~~~~ 299 (466)
.+++||+|||.+ +.|+.+++|.. ..+..+++||++||.+......
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YDp~t---------------~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 216 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYDPST---------------NQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRT 216 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEECCC---------------CceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccc
Confidence 148999999999 67888776632 2345799999999976543223
Q ss_pred ceEEEEeC--CCCeeeeEEcCCc-ccc-------cceeeecCCCceEEEEEee----------CceeEe----eccccCC
Q 012294 300 GNIKFWDI--RSGNVAWEVKDEV-DCF-------SDVTVSDNLSAIYKVGINS----------GEVSYM----DLRKLGD 355 (466)
Q Consensus 300 ~sVe~yDp--rt~~~vW~~~~~~-d~~-------~~~~v~~~~~~i~~v~~~~----------g~l~~~----dlr~~~~ 355 (466)
..+++||+ .+++ |+...+. .++ +.+.+...++.||.+|+.+ |.+++. .+.+.+.
T Consensus 217 ~~~~~y~~~~~~~~--W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (346)
T TIGR03547 217 AEVKQYLFTGGKLE--WNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV 294 (346)
T ss_pred hheEEEEecCCCce--eeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE
Confidence 45666765 5567 9877662 221 2333556788999999964 222221 1123332
Q ss_pred ----CCCeEEeccCCccccccccccceeEEEEECCEEEEEeCC
Q 012294 356 ----SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGG 394 (466)
Q Consensus 356 ----~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~ 394 (466)
.|.|..+.+ |.. ++ .+..+++.+|+||+.-|.
T Consensus 295 yd~~~~~W~~~~~----lp~--~~-~~~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 295 YALDNGKWSKVGK----LPQ--GL-AYGVSVSWNNGVLLIGGE 330 (346)
T ss_pred EEecCCcccccCC----CCC--Cc-eeeEEEEcCCEEEEEecc
Confidence 789999987 763 56 667788899999999873
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=99.91 E-value=5.6e-24 Score=227.41 Aligned_cols=159 Identities=14% Similarity=0.104 Sum_probs=132.3
Q ss_pred cccccCCCCCCCCCceeeecCCcEEEEcCC----ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccC
Q 012294 122 KSLILPLNGRDSPSAIATTNYGTLHVSHGS----KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDF 191 (466)
Q Consensus 122 ~va~l~~~~R~~~~a~~a~~~g~lyva~GG----~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~ 191 (466)
.+++|+ .+|..++ +++++|.||+++|. .+++|| |.. ++|+.+|..+++++ ++++|||+|| .
T Consensus 301 ~~~~m~-~~r~~~~--~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~----~~g~IYviGG--~ 371 (480)
T PHA02790 301 PIPPMN-SPRLYAS--GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS----INNVIYVIGG--H 371 (480)
T ss_pred ECCCCC-chhhcce--EEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE----ECCEEEEecC--c
Confidence 456787 7888877 78899999966441 368898 999 99999999998887 9999999999 6
Q ss_pred CCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCC
Q 012294 192 SGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTD 267 (466)
Q Consensus 192 ~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~ 267 (466)
++. .+++|+|||.+++|+.+++| |..++ +++++|+||+ || .+|+|||++ |
T Consensus 372 ~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~-~~~~~~~IYv~GG--------~~e~ydp~~---------------~ 425 (480)
T PHA02790 372 SET--DTTTEYLLPNHDQWQFGPSTYYPHYKSC-ALVFGRRLFLVGR--------NAEFYCESS---------------N 425 (480)
T ss_pred CCC--CccEEEEeCCCCEEEeCCCCCCccccce-EEEECCEEEEECC--------ceEEecCCC---------------C
Confidence 543 47899999999999999999 55655 7899999999 75 379999999 7
Q ss_pred ceeecCccee-----eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC
Q 012294 268 IESAIPATKL-----RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD 318 (466)
Q Consensus 268 ~w~~~~~~k~-----~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~ 318 (466)
.|+.+++|+. +.+.++|.|||+||+++.. ...+||+|||++|+ |+.-+
T Consensus 426 ~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~-~~~~ve~Yd~~~~~--W~~~~ 478 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGS-YIDTIEVYNNRTYS--WNIWD 478 (480)
T ss_pred cEeEcCCCCCCccccEEEEECCEEEEECCcCCCc-ccceEEEEECCCCe--EEecC
Confidence 7888887754 3456999999999988654 46789999999999 98743
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.91 E-value=1e-22 Score=206.39 Aligned_cols=226 Identities=15% Similarity=0.160 Sum_probs=166.3
Q ss_pred ceeeecCCcEEEEcCCc---------------eeeE---e------cCC-CCCCCccccceeeeeecccCCcEEEEeccc
Q 012294 136 AIATTNYGTLHVSHGSK---------------ITSF---D------WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATD 190 (466)
Q Consensus 136 a~~a~~~g~lyva~GG~---------------ve~Y---D------W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~ 190 (466)
+.++++++.||+++|-. .+.| | |.. ++|+.+|..++.++ ++++||++||
T Consensus 7 ~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~----~~~~lyviGG-- 80 (323)
T TIGR03548 7 CYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVS----VENGIYYIGG-- 80 (323)
T ss_pred EeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEE----ECCEEEEEcC--
Confidence 34788999999775510 1234 2 888 99999998877776 8999999999
Q ss_pred CCCceeccceeeeeCCCCce----eecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccc
Q 012294 191 FSGLQVLDLENGYVKETLNW----ENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNE 262 (466)
Q Consensus 191 ~~g~~~l~svE~ydp~t~~W----~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~ 262 (466)
.++...++.+++||+.+++| +.+++| |..++ +++++++||+ ||......++++++|||.+
T Consensus 81 ~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~-~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~----------- 148 (323)
T TIGR03548 81 SNSSERFSSVYRITLDESKEELICETIGNLPFTFENGS-ACYKDGTLYVGGGNRNGKPSNKSYLFNLET----------- 148 (323)
T ss_pred CCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCce-EEEECCEEEEEeCcCCCccCceEEEEcCCC-----------
Confidence 77767789999999999998 778888 55555 7889999999 7753333489999999999
Q ss_pred cccCCceeecCccee------eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc----ccc---cceeee
Q 012294 263 IYGTDIESAIPATKL------RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV----DCF---SDVTVS 329 (466)
Q Consensus 263 ~~~~~~w~~~~~~k~------~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~----d~~---~~~~v~ 329 (466)
+.|+.+++|.. ..+..++.|||.||+++.. ...+++|||++++ |+..++. .++ ...++.
T Consensus 149 ----~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~~--W~~~~~~~~~~~p~~~~~~~~~~ 220 (323)
T TIGR03548 149 ----QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKNQ--WQKVADPTTDSEPISLLGAASIK 220 (323)
T ss_pred ----CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCCe--eEECCCCCCCCCceeccceeEEE
Confidence 66777765421 2346899999999987643 3468999999999 9987652 122 233455
Q ss_pred cCCCceEEEEEeeCceeE---ee--------------------------ccccCC----CCCeEEeccCCcccccccccc
Q 012294 330 DNLSAIYKVGINSGEVSY---MD--------------------------LRKLGD----SSEWICLGDGRKMVNGKRKEG 376 (466)
Q Consensus 330 ~~~~~i~~v~~~~g~l~~---~d--------------------------lr~~~~----~~~W~~~~~~~~~m~~~~~~~ 376 (466)
..++.||.+|+.++..+. .+ .++++. .|.|..+++ |.. .+|
T Consensus 221 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~p~-~~r- 294 (323)
T TIGR03548 221 INESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN----SPF-FAR- 294 (323)
T ss_pred ECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc----ccc-ccc-
Confidence 567899999998753210 00 122332 688999986 432 255
Q ss_pred ceeEEEEECCEEEEEeC
Q 012294 377 FGCKIECHANQVFCGKG 393 (466)
Q Consensus 377 ~~~~~~~~~~~lf~~~~ 393 (466)
++..++.++++||+.-|
T Consensus 295 ~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 295 CGAALLLTGNNIFSING 311 (323)
T ss_pred CchheEEECCEEEEEec
Confidence 78889999999999987
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.90 E-value=1.6e-22 Score=205.02 Aligned_cols=190 Identities=11% Similarity=0.059 Sum_probs=146.0
Q ss_pred ccccCCCCCCCCCceeeecCCcEEEEcCCc--------eeeEe-----c----CC-CCCCCccccceeeeeecccCCcEE
Q 012294 123 SLILPLNGRDSPSAIATTNYGTLHVSHGSK--------ITSFD-----W----SM-RKKSTILTHFTAVDSLLALSPGVA 184 (466)
Q Consensus 123 va~l~~~~R~~~~a~~a~~~g~lyva~GG~--------ve~YD-----W----~~-a~m~~~R~~~~~v~sl~~l~~~lY 184 (466)
+++|+ .+|..++ .+++++.||++ ||. +++|| | .. ++|+.+|..+++++ ++++||
T Consensus 56 ~~~lp-~~r~~~~--~~~~~~~lyvi-GG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~----~~~~iY 127 (323)
T TIGR03548 56 DGQLP-YEAAYGA--SVSVENGIYYI-GGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY----KDGTLY 127 (323)
T ss_pred cccCC-ccccceE--EEEECCEEEEE-cCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE----ECCEEE
Confidence 45677 7777666 57789999965 552 46787 7 55 88999999888776 999999
Q ss_pred EEecccCCCceeccceeeeeCCCCceeecCCC----CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCcccccc
Q 012294 185 AAGATDFSGLQVLDLENGYVKETLNWENVTRS----SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIG 259 (466)
Q Consensus 185 aiGG~~~~g~~~l~svE~ydp~t~~W~~va~M----r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~ 259 (466)
++|| ......++.+++|||.+++|+.+++| |..+. +++++++||+ ||.++.. .+.+++|||++
T Consensus 128 v~GG--~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~-~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~-------- 195 (323)
T TIGR03548 128 VGGG--NRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPV-CVKLQNELYVFGGGSNIA-YTDGYKYSPKK-------- 195 (323)
T ss_pred EEeC--cCCCccCceEEEEcCCCCCeeECCCCCCCCCCcce-EEEECCEEEEEcCCCCcc-ccceEEEecCC--------
Confidence 9999 54445578999999999999999987 44444 6789999999 8875543 56789999999
Q ss_pred ccccccCCceeecCccee-----e------EEeeCCeEEEEeecCCCC-------------------------------c
Q 012294 260 QNEIYGTDIESAIPATKL-----R------WVSSYNLLLASGSHSDIS-------------------------------K 297 (466)
Q Consensus 260 ~~~~~~~~~w~~~~~~k~-----~------~~~~~~~Lyv~Gg~~g~~-------------------------------~ 297 (466)
++|+.+++|.. . ....++.||++||.++.. .
T Consensus 196 -------~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (323)
T TIGR03548 196 -------NQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYN 268 (323)
T ss_pred -------CeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccC
Confidence 66777776521 1 123479999999987521 1
Q ss_pred ccceEEEEeCCCCeeeeEEcCCc--ccccceeeecCCCceEEEEEe
Q 012294 298 VTGNIKFWDIRSGNVAWEVKDEV--DCFSDVTVSDNLSAIYKVGIN 341 (466)
Q Consensus 298 ~~~sVe~yDprt~~~vW~~~~~~--d~~~~~~v~~~~~~i~~v~~~ 341 (466)
+.++|++|||.+++ |+..++. ..++.+++..-++.||.+|+.
T Consensus 269 ~~~~v~~yd~~~~~--W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 269 WNRKILIYNVRTGK--WKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred cCceEEEEECCCCe--eeEcccccccccCchheEEECCEEEEEecc
Confidence 23579999999999 9987753 367777778888889988884
No 12
>PLN02153 epithiospecifier protein
Probab=99.88 E-value=4.4e-21 Score=196.01 Aligned_cols=235 Identities=16% Similarity=0.149 Sum_probs=165.1
Q ss_pred cCCCCCCCCCceeeecCCcEEEEcCC---------ceeeEe-----cCC-CCCC-Cccc---cceeeeeecccCCcEEEE
Q 012294 126 LPLNGRDSPSAIATTNYGTLHVSHGS---------KITSFD-----WSM-RKKS-TILT---HFTAVDSLLALSPGVAAA 186 (466)
Q Consensus 126 l~~~~R~~~~a~~a~~~g~lyva~GG---------~ve~YD-----W~~-a~m~-~~R~---~~~~v~sl~~l~~~lYai 186 (466)
+| .+|..++ +++.++.||+++|. .+.+|| |.. +++. .+|. .+.+++ ++++||++
T Consensus 19 ~P-~pR~~h~--~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~----~~~~iyv~ 91 (341)
T PLN02153 19 GP-GPRCSHG--IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA----VGTKLYIF 91 (341)
T ss_pred CC-CCCCcce--EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE----ECCEEEEE
Confidence 45 7788888 78889999966542 146788 998 6664 3443 444554 89999999
Q ss_pred ecccCCCceeccceeeeeCCCCceeecCCC--------CCceeEEEEECCeEEE-EecCCC------cCCCeeEEEecCC
Q 012294 187 GATDFSGLQVLDLENGYVKETLNWENVTRS--------SSTVQAIGSSDKHLFV-SFESGR------RNSNSIMVYDINS 251 (466)
Q Consensus 187 GG~~~~g~~~l~svE~ydp~t~~W~~va~M--------r~~~~Ava~l~~~IYa-Gg~~g~------~~l~sVE~YDp~t 251 (466)
|| .++...++.+++|||.+++|+.+++| |..++ +++.+++||+ ||.+.. ..++.+++|||.+
T Consensus 92 GG--~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~ 168 (341)
T PLN02153 92 GG--RDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHS-MASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIAD 168 (341)
T ss_pred CC--CCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeE-EEEECCEEEEECCccCCCccCCCcccceEEEEECCC
Confidence 99 76666788999999999999988753 55555 7889999999 886421 1257899999999
Q ss_pred CCccccccccccccCCceeecCcce--------eeEEeeCCeEEEEeecCCC------C-cccceEEEEeCCCCeeeeEE
Q 012294 252 LKPVNEIGQNEIYGTDIESAIPATK--------LRWVSSYNLLLASGSHSDI------S-KVTGNIKFWDIRSGNVAWEV 316 (466)
Q Consensus 252 ~~~~~~~~~~~~~~~~~w~~~~~~k--------~~~~~~~~~Lyv~Gg~~g~------~-~~~~sVe~yDprt~~~vW~~ 316 (466)
+.|+.++++. ......++.||++||.+.. . ..++.|++|||.+++ |+.
T Consensus 169 ---------------~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~--W~~ 231 (341)
T PLN02153 169 ---------------GKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK--WTE 231 (341)
T ss_pred ---------------CeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc--EEe
Confidence 6677766543 1244689999999996521 1 124679999999999 998
Q ss_pred cCC----cccccceeeecCCCceEEEEEee--------------CceeEeeccccCCCCCeEEeccCCc-cccccccccc
Q 012294 317 KDE----VDCFSDVTVSDNLSAIYKVGINS--------------GEVSYMDLRKLGDSSEWICLGDGRK-MVNGKRKEGF 377 (466)
Q Consensus 317 ~~~----~d~~~~~~v~~~~~~i~~v~~~~--------------g~l~~~dlr~~~~~~~W~~~~~~~~-~m~~~~~~~~ 377 (466)
.++ -.+|+..++...+..||.+|+.. .+|+..|+. .+.|..+..... .|.+ .+..
T Consensus 232 ~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~----~~~W~~~~~~~~~~~pr--~~~~ 305 (341)
T PLN02153 232 VETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE----TLVWEKLGECGEPAMPR--GWTA 305 (341)
T ss_pred ccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC----ccEEEeccCCCCCCCCC--cccc
Confidence 754 12566677777889999999963 267777764 478998875221 2331 2212
Q ss_pred eeEEEEE-CCEEEEEeC
Q 012294 378 GCKIECH-ANQVFCGKG 393 (466)
Q Consensus 378 ~~~~~~~-~~~lf~~~~ 393 (466)
.+.+.++ +++||+.-|
T Consensus 306 ~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 306 YTTATVYGKNGLLMHGG 322 (341)
T ss_pred ccccccCCcceEEEEcC
Confidence 3344434 457887655
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.88 E-value=2.8e-21 Score=200.32 Aligned_cols=240 Identities=13% Similarity=0.079 Sum_probs=164.5
Q ss_pred ccccccCCCCCCCCCceeeecCCcEEEEcCC---ceeeEe-------cCC-CCCC-CccccceeeeeecccCCcEEEEec
Q 012294 121 EKSLILPLNGRDSPSAIATTNYGTLHVSHGS---KITSFD-------WSM-RKKS-TILTHFTAVDSLLALSPGVAAAGA 188 (466)
Q Consensus 121 ~~va~l~~~~R~~~~a~~a~~~g~lyva~GG---~ve~YD-------W~~-a~m~-~~R~~~~~v~sl~~l~~~lYaiGG 188 (466)
..+++|| .+|...+ ++.+++.||+++|. ...+|| |.. ++|+ .+|..+++++ ++++||++||
T Consensus 20 ~~l~~lP-~~~~~~~--~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~----~~~~IYV~GG 92 (376)
T PRK14131 20 EQLPDLP-VPFKNGT--GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAF----IDGKLYVFGG 92 (376)
T ss_pred ccCCCCC-cCccCCe--EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEE----ECCEEEEEcC
Confidence 3456777 6766655 67789999976553 245665 988 8886 5788877776 9999999999
Q ss_pred ccCCC------ceeccceeeeeCCCCceeecCCC--C--CceeEEEEECCeEEE-EecCCC-------------------
Q 012294 189 TDFSG------LQVLDLENGYVKETLNWENVTRS--S--STVQAIGSSDKHLFV-SFESGR------------------- 238 (466)
Q Consensus 189 ~~~~g------~~~l~svE~ydp~t~~W~~va~M--r--~~~~Ava~l~~~IYa-Gg~~g~------------------- 238 (466)
+.. ...++.+++|||.+++|+.++++ | ..+.++++.+++||+ ||.+..
T Consensus 93 --~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~ 170 (376)
T PRK14131 93 --IGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPK 170 (376)
T ss_pred --CCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhh
Confidence 543 23578999999999999999864 3 333423338999999 886431
Q ss_pred ---------------cCCCeeEEEecCCCCccccccccccccCCceeecCccee------eEEeeCCeEEEEeecCCCCc
Q 012294 239 ---------------RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL------RWVSSYNLLLASGSHSDISK 297 (466)
Q Consensus 239 ---------------~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~------~~~~~~~~Lyv~Gg~~g~~~ 297 (466)
..++.|++|||.+ +.|+.+++|.. ..+..++.||++||.+.+..
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~v~~YD~~t---------------~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~ 235 (376)
T PRK14131 171 DKINDAYFDKKPEDYFFNKEVLSYDPST---------------NQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGL 235 (376)
T ss_pred hhhHHHHhcCChhhcCcCceEEEEECCC---------------CeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCc
Confidence 0147899999999 66877775542 23457999999999754421
Q ss_pred ccc--eEEEEeCCCCeeeeEEcCCc-cc--------ccceeeecCCCceEEEEEeeC----------ceeE----eeccc
Q 012294 298 VTG--NIKFWDIRSGNVAWEVKDEV-DC--------FSDVTVSDNLSAIYKVGINSG----------EVSY----MDLRK 352 (466)
Q Consensus 298 ~~~--sVe~yDprt~~~vW~~~~~~-d~--------~~~~~v~~~~~~i~~v~~~~g----------~l~~----~dlr~ 352 (466)
... ++-.|||++++ |+...+. .+ ++.+.+...++.||.+|+.+. .++. -++.+
T Consensus 236 ~~~~~~~~~~~~~~~~--W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (376)
T PRK14131 236 RTDAVKQGKFTGNNLK--WQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWS 313 (376)
T ss_pred CChhheEEEecCCCcc--eeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceee
Confidence 111 23345888899 9987652 11 223334557788999998642 2221 11112
Q ss_pred cCC----CCCeEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294 353 LGD----SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG 393 (466)
Q Consensus 353 ~~~----~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~ 393 (466)
.+. .+.|..+.+ |.. ++ .+...+..+|.||+.-|
T Consensus 314 ~e~yd~~~~~W~~~~~----lp~--~r-~~~~av~~~~~iyv~GG 351 (376)
T PRK14131 314 DEIYALVNGKWQKVGE----LPQ--GL-AYGVSVSWNNGVLLIGG 351 (376)
T ss_pred hheEEecCCcccccCc----CCC--Cc-cceEEEEeCCEEEEEcC
Confidence 232 688998877 764 66 66778889999999987
No 14
>PHA03098 kelch-like protein; Provisional
Probab=99.88 E-value=1.8e-21 Score=209.90 Aligned_cols=199 Identities=12% Similarity=0.126 Sum_probs=153.4
Q ss_pred eeecCCcEEEEcCC--------ceeeEe-----cCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeee
Q 012294 138 ATTNYGTLHVSHGS--------KITSFD-----WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGY 203 (466)
Q Consensus 138 ~a~~~g~lyva~GG--------~ve~YD-----W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~y 203 (466)
++++++.||+++|. .+.+|| |.. ++|+.+|..+++++ ++++||++|| .++...++++|+|
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~----~~~~lyv~GG--~~~~~~~~~v~~y 363 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV----FNNRIYVIGG--IYNSISLNTVESW 363 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE----ECCEEEEEeC--CCCCEecceEEEE
Confidence 67789999965441 145788 988 99999999988877 9999999999 7666678999999
Q ss_pred eCCCCceeecCCC---CCceeEEEEECCeEEE-EecC-CCcCCCeeEEEecCCCCccccccccccccCCceeecCccee-
Q 012294 204 VKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFES-GRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL- 277 (466)
Q Consensus 204 dp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~-g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~- 277 (466)
||.+++|+..++| |..++ +++++++||+ ||.. ....++++|+|||.+ +.|+.+++|..
T Consensus 364 d~~~~~W~~~~~lp~~r~~~~-~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t---------------~~W~~~~~~p~~ 427 (534)
T PHA03098 364 KPGESKWREEPPLIFPRYNPC-VVNVNNLIYVIGGISKNDELLKTVECFSLNT---------------NKWSKGSPLPIS 427 (534)
T ss_pred cCCCCceeeCCCcCcCCccce-EEEECCEEEEECCcCCCCcccceEEEEeCCC---------------CeeeecCCCCcc
Confidence 9999999999998 66665 7889999999 8842 223479999999999 66777776543
Q ss_pred ----eEEeeCCeEEEEeecCCCCc--ccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCc-----e
Q 012294 278 ----RWVSSYNLLLASGSHSDISK--VTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGE-----V 345 (466)
Q Consensus 278 ----~~~~~~~~Lyv~Gg~~g~~~--~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~-----l 345 (466)
.....++.||++||.++... ....+++|||++++ |+...+ ..++...++...++.||.+|+.++. +
T Consensus 428 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v 505 (534)
T PHA03098 428 HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEI 505 (534)
T ss_pred ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEECCEEEEEcCCcCCccccee
Confidence 23458999999999765432 24469999999999 998765 3345566666678899999996644 3
Q ss_pred eEeeccccCCCCCeEEecc
Q 012294 346 SYMDLRKLGDSSEWICLGD 364 (466)
Q Consensus 346 ~~~dlr~~~~~~~W~~~~~ 364 (466)
..-|.. .+.|..+.+
T Consensus 506 ~~yd~~----~~~W~~~~~ 520 (534)
T PHA03098 506 EVYDDK----TNTWTLFCK 520 (534)
T ss_pred EEEeCC----CCEEEecCC
Confidence 333322 688988876
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.87 E-value=3.1e-21 Score=197.04 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=137.0
Q ss_pred ccccCCCCCCCCCceeeecCCcEEEEcCC-------------ceeeEe-----cCC-CC-CCCccccceeeeeecccCCc
Q 012294 123 SLILPLNGRDSPSAIATTNYGTLHVSHGS-------------KITSFD-----WSM-RK-KSTILTHFTAVDSLLALSPG 182 (466)
Q Consensus 123 va~l~~~~R~~~~a~~a~~~g~lyva~GG-------------~ve~YD-----W~~-a~-m~~~R~~~~~v~sl~~l~~~ 182 (466)
+++|+..+|..++ ++++++.|||++|- .+++|| |.. +. ++..|..+++++ .++++
T Consensus 46 l~~~p~~~R~~~~--~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~---~~~g~ 120 (346)
T TIGR03547 46 IADFPGGPRNQAV--AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFS---LHNGQ 120 (346)
T ss_pred CCCCCCCCcccce--EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEE---EeCCE
Confidence 4566634677777 78899999966541 146899 999 63 344444444441 28999
Q ss_pred EEEEecccCCCce----------------------------------eccceeeeeCCCCceeecCCC---CCceeEEEE
Q 012294 183 VAAAGATDFSGLQ----------------------------------VLDLENGYVKETLNWENVTRS---SSTVQAIGS 225 (466)
Q Consensus 183 lYaiGG~~~~g~~----------------------------------~l~svE~ydp~t~~W~~va~M---r~~~~Ava~ 225 (466)
|||+|| +++.. .++++|+|||.+++|+.+++| ++...++++
T Consensus 121 IYviGG--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~ 198 (346)
T TIGR03547 121 AYFTGG--VNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVH 198 (346)
T ss_pred EEEEcC--cChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEE
Confidence 999999 54320 247899999999999999998 233344789
Q ss_pred ECCeEEE-EecCCCc-CCCeeEEEecCCCCccccccccccccCCceeecCcceee------------EEeeCCeEEEEee
Q 012294 226 SDKHLFV-SFESGRR-NSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR------------WVSSYNLLLASGS 291 (466)
Q Consensus 226 l~~~IYa-Gg~~g~~-~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~------------~~~~~~~Lyv~Gg 291 (466)
++++||+ ||..... ....+++||+.. . .+.|+.+++|... .+.++|.||++||
T Consensus 199 ~~~~iyv~GG~~~~~~~~~~~~~y~~~~-------~------~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 199 KGNKLLLINGEIKPGLRTAEVKQYLFTG-------G------KLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGG 265 (346)
T ss_pred ECCEEEEEeeeeCCCccchheEEEEecC-------C------CceeeecCCCCCCCCCccccccEEeeeEECCEEEEeec
Confidence 9999999 8864332 134566676533 1 1557766666321 2358999999999
Q ss_pred cCCCC----------------cccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeC
Q 012294 292 HSDIS----------------KVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSG 343 (466)
Q Consensus 292 ~~g~~----------------~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g 343 (466)
++... ..+.++|+|||.+++ |+...+ -.++...++...++.||.+|+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~--W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 266 ANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGK--WSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred CCCCCchhhhhcCCccccCCCCceeEeeEEEecCCc--ccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 76321 012479999999999 998776 223455566678999999999654
No 16
>PLN02193 nitrile-specifier protein
Probab=99.85 E-value=1.3e-19 Score=193.47 Aligned_cols=205 Identities=13% Similarity=0.124 Sum_probs=155.5
Q ss_pred cCCCCCCCCCceeeecCCcEEEEcCCc----------eeeEe-----cCC-CCC---CC-ccccceeeeeecccCCcEEE
Q 012294 126 LPLNGRDSPSAIATTNYGTLHVSHGSK----------ITSFD-----WSM-RKK---ST-ILTHFTAVDSLLALSPGVAA 185 (466)
Q Consensus 126 l~~~~R~~~~a~~a~~~g~lyva~GG~----------ve~YD-----W~~-a~m---~~-~R~~~~~v~sl~~l~~~lYa 185 (466)
+| .+|..++ ++++++.||+. ||. +++|| |.. +++ +. .|..+++++ ++++||+
T Consensus 162 ~P-~pR~~h~--~~~~~~~iyv~-GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~----~~~~lYv 233 (470)
T PLN02193 162 GP-GLRCSHG--IAQVGNKIYSF-GGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVS----IGSTLYV 233 (470)
T ss_pred CC-CCccccE--EEEECCEEEEE-CCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEE----ECCEEEE
Confidence 44 7888888 78889999965 542 46788 987 543 22 234555555 8999999
Q ss_pred EecccCCCceeccceeeeeCCCCceeecCCC------CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccc
Q 012294 186 AGATDFSGLQVLDLENGYVKETLNWENVTRS------SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEI 258 (466)
Q Consensus 186 iGG~~~~g~~~l~svE~ydp~t~~W~~va~M------r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~ 258 (466)
+|| +++...++.+++|||.+++|+.+++| |..++ +++.+++||+ ||.++...++.+++|||.+
T Consensus 234 fGG--~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~-~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t------- 303 (470)
T PLN02193 234 FGG--RDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS-MAADEENVYVFGGVSATARLKTLDSYNIVD------- 303 (470)
T ss_pred ECC--CCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE-EEEECCEEEEECCCCCCCCcceEEEEECCC-------
Confidence 999 77767789999999999999998876 55655 7889999999 8876655689999999999
Q ss_pred cccccccCCceeecCcc--------eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC----cccccce
Q 012294 259 GQNEIYGTDIESAIPAT--------KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE----VDCFSDV 326 (466)
Q Consensus 259 ~~~~~~~~~~w~~~~~~--------k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~----~d~~~~~ 326 (466)
+.|+.+++. .......++.||++||++|.. .+.+++|||.+++ |+..++ -..|+..
T Consensus 304 --------~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~--~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 304 --------KKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE--VDDVHYYDPVQDK--WTQVETFGVRPSERSVF 371 (470)
T ss_pred --------CEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc--cCceEEEECCCCE--EEEeccCCCCCCCccee
Confidence 667766531 112345799999999988754 5689999999999 998754 2345666
Q ss_pred eeecCCCceEEEEEeeC--------------ceeEeeccccCCCCCeEEecc
Q 012294 327 TVSDNLSAIYKVGINSG--------------EVSYMDLRKLGDSSEWICLGD 364 (466)
Q Consensus 327 ~v~~~~~~i~~v~~~~g--------------~l~~~dlr~~~~~~~W~~~~~ 364 (466)
++...++.||.+|+.+. ++++.|+. ++.|..+..
T Consensus 372 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~----t~~W~~~~~ 419 (470)
T PLN02193 372 ASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE----TLQWERLDK 419 (470)
T ss_pred EEEEECCEEEEECCccCCccccccCccceeccEEEEEcC----cCEEEEccc
Confidence 77778899999999642 45666654 477998875
No 17
>PLN02153 epithiospecifier protein
Probab=99.85 E-value=2e-19 Score=183.80 Aligned_cols=203 Identities=11% Similarity=0.046 Sum_probs=147.9
Q ss_pred CCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC----CC--ceeEEEEECCeEEE-Eec
Q 012294 163 KSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS----SS--TVQAIGSSDKHLFV-SFE 235 (466)
Q Consensus 163 m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M----r~--~~~Ava~l~~~IYa-Gg~ 235 (466)
++.+|..+++++ ++++||++||.........+.+.+||+.+++|+.+++| |. ...++++++++||+ ||.
T Consensus 19 ~P~pR~~h~~~~----~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~ 94 (341)
T PLN02153 19 GPGPRCSHGIAV----VGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGR 94 (341)
T ss_pred CCCCCCcceEEE----ECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCC
Confidence 678899988877 89999999993212233467899999999999998876 22 12347889999999 887
Q ss_pred CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcc-------e---eeEEeeCCeEEEEeecCCCC-----cccc
Q 012294 236 SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT-------K---LRWVSSYNLLLASGSHSDIS-----KVTG 300 (466)
Q Consensus 236 ~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~-------k---~~~~~~~~~Lyv~Gg~~g~~-----~~~~ 300 (466)
++...++.+++|||.+ +.|+.+++| . ......+++|||.||++... ..+.
T Consensus 95 ~~~~~~~~v~~yd~~t---------------~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 159 (341)
T PLN02153 95 DEKREFSDFYSYDTVK---------------NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFR 159 (341)
T ss_pred CCCCccCcEEEEECCC---------------CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccc
Confidence 6655588999999999 556665543 1 22345889999999986321 1245
Q ss_pred eEEEEeCCCCeeeeEEcCC-c---ccccceeeecCCCceEEEEEee-------------CceeEeeccccCCCCCeEEec
Q 012294 301 NIKFWDIRSGNVAWEVKDE-V---DCFSDVTVSDNLSAIYKVGINS-------------GEVSYMDLRKLGDSSEWICLG 363 (466)
Q Consensus 301 sVe~yDprt~~~vW~~~~~-~---d~~~~~~v~~~~~~i~~v~~~~-------------g~l~~~dlr~~~~~~~W~~~~ 363 (466)
.|++|||.+++ |+..++ . ..+...++...++.||.+++.+ .+|++.|+. ++.|..+.
T Consensus 160 ~v~~yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~----~~~W~~~~ 233 (341)
T PLN02153 160 TIEAYNIADGK--WVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPA----SGKWTEVE 233 (341)
T ss_pred eEEEEECCCCe--EeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcC----CCcEEecc
Confidence 79999999999 998654 2 4566667777888999998753 234444433 58899987
Q ss_pred cCCccccccccccceeEEEEECCEEEEEeCC
Q 012294 364 DGRKMVNGKRKEGFGCKIECHANQVFCGKGG 394 (466)
Q Consensus 364 ~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~ 394 (466)
.... +- .+| +++..++.+++||+.-|.
T Consensus 234 ~~g~-~P--~~r-~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 234 TTGA-KP--SAR-SVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred ccCC-CC--CCc-ceeeeEEECCEEEEECcc
Confidence 5211 11 245 778889999999999874
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.80 E-value=8.2e-19 Score=181.96 Aligned_cols=195 Identities=16% Similarity=0.147 Sum_probs=131.8
Q ss_pred ccccCCCCCCCCCceeeecCCcEEEEcCC-------------ceeeEe-----cCC-CCC-CCccccceeeeeecccCCc
Q 012294 123 SLILPLNGRDSPSAIATTNYGTLHVSHGS-------------KITSFD-----WSM-RKK-STILTHFTAVDSLLALSPG 182 (466)
Q Consensus 123 va~l~~~~R~~~~a~~a~~~g~lyva~GG-------------~ve~YD-----W~~-a~m-~~~R~~~~~v~sl~~l~~~ 182 (466)
+++|+..+|..++ ++++++.||+++|- .+++|| |.. +++ +..|..+.+++ ..+++
T Consensus 67 l~~~p~~~r~~~~--~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~---~~~~~ 141 (376)
T PRK14131 67 IAAFPGGPREQAV--AAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVS---LHNGK 141 (376)
T ss_pred CCcCCCCCcccce--EEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEE---eeCCE
Confidence 4556534677766 78889999966541 146799 998 643 33344333332 26999
Q ss_pred EEEEecccCCCc----------------------------------eeccceeeeeCCCCceeecCCC---CCceeEEEE
Q 012294 183 VAAAGATDFSGL----------------------------------QVLDLENGYVKETLNWENVTRS---SSTVQAIGS 225 (466)
Q Consensus 183 lYaiGG~~~~g~----------------------------------~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~ 225 (466)
||++|| .++. ..++.+++|||.+++|+.+++| ++...++++
T Consensus 142 IYv~GG--~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~ 219 (376)
T PRK14131 142 AYITGG--VNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVI 219 (376)
T ss_pred EEEECC--CCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEE
Confidence 999999 5321 0246799999999999999988 333445788
Q ss_pred ECCeEEE-EecCCCcCCCeeEE----EecCCCCccccccccccccCCceeecCcceee-------------EEeeCCeEE
Q 012294 226 SDKHLFV-SFESGRRNSNSIMV----YDINSLKPVNEIGQNEIYGTDIESAIPATKLR-------------WVSSYNLLL 287 (466)
Q Consensus 226 l~~~IYa-Gg~~g~~~l~sVE~----YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~-------------~~~~~~~Ly 287 (466)
++++||+ ||..... .+++++ |||++ ++|+.+++|... ...+++.||
T Consensus 220 ~~~~iYv~GG~~~~~-~~~~~~~~~~~~~~~---------------~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iy 283 (376)
T PRK14131 220 KGNKLWLINGEIKPG-LRTDAVKQGKFTGNN---------------LKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLL 283 (376)
T ss_pred ECCEEEEEeeeECCC-cCChhheEEEecCCC---------------cceeecCCCCCCCcCCcCCccceEeceeECCEEE
Confidence 9999999 8863322 234443 46666 567777666221 234799999
Q ss_pred EEeecCCCCc----------------ccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEee
Q 012294 288 ASGSHSDISK----------------VTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINS 342 (466)
Q Consensus 288 v~Gg~~g~~~----------------~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~ 342 (466)
++||.+.+.. ...++|+|||++++ |+...+ -.++...++...++.||.+|+..
T Consensus 284 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~--W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 284 VAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGK--WQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred EeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCc--ccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 9999775321 01368999999999 987665 33455666677888899999853
No 19
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.80 E-value=5e-20 Score=154.58 Aligned_cols=82 Identities=45% Similarity=0.817 Sum_probs=69.5
Q ss_pred EEEEECCeEEEEeHHHhhccCCCCccccccCC---------Cc-eeEcCCchhHHHHhccccc-CccccCCCCcChHHHH
Q 012294 25 VTIDVGGQIFQTTKQTLALAGPKSLLSKLADS---------TH-RFIDRDPELFSILLSLLRT-GNLPSKAKAFDIEDLI 93 (466)
Q Consensus 25 V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~---------~~-~fiDRDp~~F~~IL~ylrt-G~l~~~~~~~~~~~Ll 93 (466)
|+|||||++|.|+++||.+ .|+|+|.+|++. ++ +||||||++|++||+|||+ ++++. +.+.....|+
T Consensus 1 V~lNVGG~~f~~~~~tL~~-~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~-~~~~~~~~l~ 78 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTR-YPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPI-PDEICLEELL 78 (94)
T ss_dssp EEEEETTEEEEEEHHHHHT-STTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB----TTS-HHHHH
T ss_pred CEEEECCEEEEEcHHHHhh-CCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCC-CCchhHHHHH
Confidence 7999999999999999998 799999999983 22 9999999999999999999 78876 5578889999
Q ss_pred Hhhccccchhh-HHhh
Q 012294 94 EESKFYNIESL-LINS 108 (466)
Q Consensus 94 ~EA~f~~l~~l-~~~~ 108 (466)
+||+||+|+++ ++.|
T Consensus 79 ~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 79 EEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHT-HHHHBHHC
T ss_pred HHHHHcCCCccccCCC
Confidence 99999999999 7776
No 20
>PLN02193 nitrile-specifier protein
Probab=99.79 E-value=9.9e-18 Score=178.98 Aligned_cols=207 Identities=11% Similarity=0.089 Sum_probs=151.1
Q ss_pred cCC-CC---CCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC----C--CceeEEEEEC
Q 012294 158 WSM-RK---KSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS----S--STVQAIGSSD 227 (466)
Q Consensus 158 W~~-a~---m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M----r--~~~~Ava~l~ 227 (466)
|.. ++ ++.+|..|++++ +++.||++||.........+.+++||+.+++|+.++++ + +...++++++
T Consensus 153 W~~~~~~~~~P~pR~~h~~~~----~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~ 228 (470)
T PLN02193 153 WIKVEQKGEGPGLRCSHGIAQ----VGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG 228 (470)
T ss_pred EEEcccCCCCCCCccccEEEE----ECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC
Confidence 987 54 578899998887 99999999993212223456799999999999987653 2 2233478899
Q ss_pred CeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcce--------eeEEeeCCeEEEEeecCCCCcc
Q 012294 228 KHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK--------LRWVSSYNLLLASGSHSDISKV 298 (466)
Q Consensus 228 ~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k--------~~~~~~~~~Lyv~Gg~~g~~~~ 298 (466)
++||+ ||.++...++.+++|||.+ +.|+.+++|. ......++.||+.||+++.. .
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t---------------~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~ 292 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTT---------------NEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-R 292 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCC---------------CEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-C
Confidence 99999 8876665689999999999 5677666551 12335799999999988754 5
Q ss_pred cceEEEEeCCCCeeeeEEcCC----cccccceeeecCCCceEEEEEeeC----ceeEeeccccCCCCCeEEeccCCcccc
Q 012294 299 TGNIKFWDIRSGNVAWEVKDE----VDCFSDVTVSDNLSAIYKVGINSG----EVSYMDLRKLGDSSEWICLGDGRKMVN 370 (466)
Q Consensus 299 ~~sVe~yDprt~~~vW~~~~~----~d~~~~~~v~~~~~~i~~v~~~~g----~l~~~dlr~~~~~~~W~~~~~~~~~m~ 370 (466)
+..+++|||.+++ |+...+ -..|...++...++.||.+++.+| ++++-|+. .+.|..+..... +.
T Consensus 293 ~~~~~~yd~~t~~--W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~----t~~W~~~~~~g~-~P 365 (470)
T PLN02193 293 LKTLDSYNIVDKK--WFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPV----QDKWTQVETFGV-RP 365 (470)
T ss_pred cceEEEEECCCCE--EEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECC----CCEEEEeccCCC-CC
Confidence 6689999999999 998653 123445555566788999999764 34445443 578999876211 11
Q ss_pred ccccccceeEEEEECCEEEEEeCC
Q 012294 371 GKRKEGFGCKIECHANQVFCGKGG 394 (466)
Q Consensus 371 ~~~~~~~~~~~~~~~~~lf~~~~~ 394 (466)
.+| ..+..++++++||+.-|.
T Consensus 366 --~~R-~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 366 --SER-SVFASAAVGKHIVIFGGE 386 (470)
T ss_pred --CCc-ceeEEEEECCEEEEECCc
Confidence 245 677888999999999773
No 21
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.4e-17 Score=160.54 Aligned_cols=88 Identities=31% Similarity=0.584 Sum_probs=78.6
Q ss_pred CCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------C--c-eeEcCCchhHHHHhcccccCccccCCCCcChHH
Q 012294 21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------T--H-RFIDRDPELFSILLSLLRTGNLPSKAKAFDIED 91 (466)
Q Consensus 21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~--~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~ 91 (466)
..+.|+|||||+.|.|+++||++ -+++|..|+.. + + +||||+|..|..||||||+|.+.++.....+.+
T Consensus 3 ~~~~vkLnvGG~~F~Tsk~TLtk--~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~E 80 (230)
T KOG2716|consen 3 MSETVKLNVGGTIFKTSKSTLTK--FDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKE 80 (230)
T ss_pred ccceEEEecCCeEEEeehhhhhh--hhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHH
Confidence 35789999999999999999999 57899999985 2 2 999999999999999999999998544556789
Q ss_pred HHHhhccccchhhHHhhcC
Q 012294 92 LIEESKFYNIESLLINSQS 110 (466)
Q Consensus 92 Ll~EA~f~~l~~l~~~~~~ 110 (466)
|++||+||.|+.|++.|+.
T Consensus 81 l~~EA~fYlL~~Lv~~C~~ 99 (230)
T KOG2716|consen 81 LLREAEFYLLDGLVELCQS 99 (230)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999953
No 22
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=99.68 E-value=1.8e-17 Score=156.70 Aligned_cols=90 Identities=34% Similarity=0.571 Sum_probs=82.6
Q ss_pred CCCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC---------Cc-eeEcCCchhHHHHhcccccCccccCCCCcC
Q 012294 19 SIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS---------TH-RFIDRDPELFSILLSLLRTGNLPSKAKAFD 88 (466)
Q Consensus 19 ~~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~---------~~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~ 88 (466)
++.+..|+|||||++|.|++.||.-+.|||+|.+||.+ ++ +||||||..|++||||||.|+++. .++++
T Consensus 5 ~~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~-~s~i~ 83 (302)
T KOG1665|consen 5 SNLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPS-LSDID 83 (302)
T ss_pred cChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceee-cCCcc
Confidence 44568999999999999999999999999999999986 23 899999999999999999999997 46889
Q ss_pred hHHHHHhhccccchhhHHhhc
Q 012294 89 IEDLIEESKFYNIESLLINSQ 109 (466)
Q Consensus 89 ~~~Ll~EA~f~~l~~l~~~~~ 109 (466)
...+++||+||||-.|++++.
T Consensus 84 ~lgvLeeArff~i~sL~~hle 104 (302)
T KOG1665|consen 84 CLGVLEEARFFQILSLKDHLE 104 (302)
T ss_pred HHHHHHHhhHHhhHhHHhHHh
Confidence 999999999999999999984
No 23
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.58 E-value=5.5e-16 Score=140.70 Aligned_cols=84 Identities=42% Similarity=0.600 Sum_probs=75.6
Q ss_pred CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--------C--c-eeEcCCchhHHHHhcccccCccccCCCCcChH
Q 012294 22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--------T--H-RFIDRDPELFSILLSLLRTGNLPSKAKAFDIE 90 (466)
Q Consensus 22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--------~--~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~ 90 (466)
+.+|+|||||+.|.|+|+||.+ .|.+|+..+.+. + + |||||||..|..||||||.|+|.+.+ ...+
T Consensus 20 s~wVRlNVGGt~f~TtktTl~r-dp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~--l~ee 96 (210)
T KOG2715|consen 20 SLWVRLNVGGTVFLTTKTTLPR-DPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK--LSEE 96 (210)
T ss_pred eEEEEEecCCEEEEeeeecccc-CcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh--hhhh
Confidence 5799999999999999999999 898999998874 2 3 99999999999999999999999853 6778
Q ss_pred HHHHhhccccchhhHHhh
Q 012294 91 DLIEESKFYNIESLLINS 108 (466)
Q Consensus 91 ~Ll~EA~f~~l~~l~~~~ 108 (466)
-+|+||+||.+.+|++.+
T Consensus 97 GvL~EAefyn~~~li~li 114 (210)
T KOG2715|consen 97 GVLEEAEFYNDPSLIQLI 114 (210)
T ss_pred ccchhhhccCChHHHHHH
Confidence 899999999999987765
No 24
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.50 E-value=9e-15 Score=140.20 Aligned_cols=89 Identities=31% Similarity=0.485 Sum_probs=77.6
Q ss_pred CCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------C--c-eeEcCCchhHHHHhcccccCccccCCCCcChH
Q 012294 20 IDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------T--H-RFIDRDPELFSILLSLLRTGNLPSKAKAFDIE 90 (466)
Q Consensus 20 ~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~--~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~ 90 (466)
.-++.|+|||||+.|+|++.||.+ +|+|+|.+||++ + + +|||||+.+|++||+||||.++.++....+..
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~-~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~ 84 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTK-FPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVE 84 (221)
T ss_pred ccCCceeeccCCeEEEeeccceee-chHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhHH
Confidence 346899999999999999999999 999999999995 2 2 99999999999999999997777643335689
Q ss_pred HHHHhhccccchhhHHhhc
Q 012294 91 DLIEESKFYNIESLLINSQ 109 (466)
Q Consensus 91 ~Ll~EA~f~~l~~l~~~~~ 109 (466)
.|++||+||+|..++..+.
T Consensus 85 ~L~rEA~f~~l~~~~~~l~ 103 (221)
T KOG2723|consen 85 RLVREAEFFQLEAPVTYLL 103 (221)
T ss_pred HHHHHHHHHccccHHHHHh
Confidence 9999999999998877663
No 25
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.7e-14 Score=144.31 Aligned_cols=104 Identities=31% Similarity=0.510 Sum_probs=86.1
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC-------CceeEcCCchhHHHHhc
Q 012294 1 MPSIATSMPPSKSKSKSKSIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-------THRFIDRDPELFSILLS 73 (466)
Q Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-------~~~fiDRDp~~F~~IL~ 73 (466)
||+--..|||-..-+. +..++.+.|||.|++|+|.+.||.+ +|+++|+.--.+ .+||+||||++|++|||
T Consensus 20 ~Pva~~PmP~aP~~~~--~r~De~lvlNvSGrRFeTWknTLer-yPdTLLGSsEkeFFy~~dt~eYFFDRDPdiFRhvLn 96 (632)
T KOG4390|consen 20 MPVAQQPMPPAPGVKA--KRQDELLVLNVSGRRFETWKNTLER-YPDTLLGSSEKEFFYDEDTGEYFFDRDPDIFRHVLN 96 (632)
T ss_pred eecccCCCCCCchhhh--hccCcEEEEeccccchhHHHhHHHh-CchhhhCCcchheeecCCcccccccCChHHHHHHHH
Confidence 5666666776543333 3357899999999999999999999 999999875432 24999999999999999
Q ss_pred ccccCccccCCCCcChHHHHHhhccccchh-hHHhh
Q 012294 74 LLRTGNLPSKAKAFDIEDLIEESKFYNIES-LLINS 108 (466)
Q Consensus 74 ylrtG~l~~~~~~~~~~~Ll~EA~f~~l~~-l~~~~ 108 (466)
|+|||+|+. |+..++...-+|..||||-+ ++-.|
T Consensus 97 FYRTGkLHy-PR~ECi~AyDeELaF~Gl~PeligDC 131 (632)
T KOG4390|consen 97 FYRTGKLHY-PRHECISAYDEELAFYGLVPELIGDC 131 (632)
T ss_pred HhhcCcccC-chHHHHHHhhhhhhHhcccHHHHhhh
Confidence 999999997 78899999999999999876 55666
No 26
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.1e-13 Score=144.37 Aligned_cols=89 Identities=29% Similarity=0.370 Sum_probs=79.8
Q ss_pred CCCCeEEEEECCeEEEEeHHHhhccCCCCccccccC--C---------------CceeEcCCchhHHHHhcccccCcccc
Q 012294 20 IDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLAD--S---------------THRFIDRDPELFSILLSLLRTGNLPS 82 (466)
Q Consensus 20 ~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~--~---------------~~~fiDRDp~~F~~IL~ylrtG~l~~ 82 (466)
..++.|+|||||++|++.++||.+ +|.+.|+++.. + ++||+||+|.+|.+||||+||||||.
T Consensus 28 ~~~~~i~lNVGG~r~~l~~~tL~~-~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH~ 106 (477)
T KOG3713|consen 28 ALDRRVRLNVGGTRHELYWSTLKR-FPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLHV 106 (477)
T ss_pred CcCcEEEEeeCCeeEEehHHHHhh-CchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeecc
Confidence 446799999999999999999999 99999998865 1 35999999999999999999999998
Q ss_pred CCCCcChHHHHHhhccccchhh-HHhhcC
Q 012294 83 KAKAFDIEDLIEESKFYNIESL-LINSQS 110 (466)
Q Consensus 83 ~~~~~~~~~Ll~EA~f~~l~~l-~~~~~~ 110 (466)
|.+.+...+.+|.+||||++. ++.|++
T Consensus 107 -p~~vC~~~F~eEL~yWgI~~~~le~CC~ 134 (477)
T KOG3713|consen 107 -PADVCPLSFEEELDYWGIDEAHLESCCW 134 (477)
T ss_pred -ccccchHHHHHHHHHhCCChhhhhHHhH
Confidence 779999999999999999985 577754
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.23 E-value=2.6e-10 Score=111.43 Aligned_cols=238 Identities=16% Similarity=0.153 Sum_probs=154.3
Q ss_pred CCCCCCceeeecCCcEEEEcCCce-------------eeEe-----cCC-CC-------------CCCccccceeeeeec
Q 012294 130 GRDSPSAIATTNYGTLHVSHGSKI-------------TSFD-----WSM-RK-------------KSTILTHFTAVDSLL 177 (466)
Q Consensus 130 ~R~~~~a~~a~~~g~lyva~GG~v-------------e~YD-----W~~-a~-------------m~~~R~~~~~v~sl~ 177 (466)
.|..++ ++.....|| ..||.+ +.+| |+. ++ .+-.|..+.++.
T Consensus 13 rRVNHA--avaVG~riY-SFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~--- 86 (392)
T KOG4693|consen 13 RRVNHA--AVAVGSRIY-SFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVE--- 86 (392)
T ss_pred ccccce--eeeecceEE-ecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEE---
Confidence 456666 566778899 778754 2222 887 44 134577787776
Q ss_pred ccCCcEEEEecccCCC-ceeccceeeeeCCCCceeecCC-----C-CCceeEEEEECCeEEE-EecC--CCcCCCeeEEE
Q 012294 178 ALSPGVAAAGATDFSG-LQVLDLENGYVKETLNWENVTR-----S-SSTVQAIGSSDKHLFV-SFES--GRRNSNSIMVY 247 (466)
Q Consensus 178 ~l~~~lYaiGG~~~~g-~~~l~svE~ydp~t~~W~~va~-----M-r~~~~Ava~l~~~IYa-Gg~~--g~~~l~sVE~Y 247 (466)
.++++|+-|| .+. ....|..-+|||++++|...-- - |-.+. +|++++.+|+ ||+. ..+..+.+.+.
T Consensus 87 -y~d~~yvWGG--RND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHs-AcV~gn~MyiFGGye~~a~~FS~d~h~l 162 (392)
T KOG4693|consen 87 -YQDKAYVWGG--RNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHS-ACVWGNQMYIFGGYEEDAQRFSQDTHVL 162 (392)
T ss_pred -EcceEEEEcC--ccCcccccceeeeeccccccccccceeeecCCccCCce-eeEECcEEEEecChHHHHHhhhccceeE
Confidence 9999999999 443 4457888899999999975431 1 77777 6999999999 7752 23346778888
Q ss_pred ecCC--CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCc--------ccceEEEEeCCCCeeeeEEc
Q 012294 248 DINS--LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISK--------VTGNIKFWDIRSGNVAWEVK 317 (466)
Q Consensus 248 Dp~t--~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~--------~~~sVe~yDprt~~~vW~~~ 317 (466)
|..| |+.+++-|. .+.|.-. ..-...++.+|+-||....++ |...|..+|.+|+- |.-.
T Consensus 163 d~~TmtWr~~~Tkg~-----PprwRDF----H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~a--W~r~ 231 (392)
T KOG4693|consen 163 DFATMTWREMHTKGD-----PPRWRDF----HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGA--WTRT 231 (392)
T ss_pred eccceeeeehhccCC-----Cchhhhh----hhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccc--cccC
Confidence 8887 655555543 1122210 011137899999999654332 56679999999998 9875
Q ss_pred CC-----cccccceeeecCCCceEEEEEeeCcee--EeeccccCC-CCCeEEeccCCccccccccccceeEEEEECCEEE
Q 012294 318 DE-----VDCFSDVTVSDNLSAIYKVGINSGEVS--YMDLRKLGD-SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVF 389 (466)
Q Consensus 318 ~~-----~d~~~~~~v~~~~~~i~~v~~~~g~l~--~~dlr~~~~-~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf 389 (466)
.+ +-+|+ ...=.-+..||.-|+++|.|- +-||=+..- +-.|..++.+-|.-.- ++| ..-.+.++++|
T Consensus 232 p~~~~~P~GRRS-HS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~a-RRR---qC~~v~g~kv~ 306 (392)
T KOG4693|consen 232 PENTMKPGGRRS-HSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSA-RRR---QCSVVSGGKVY 306 (392)
T ss_pred CCCCcCCCcccc-cceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCc-ccc---eeEEEECCEEE
Confidence 44 22332 233347788999999888742 223333322 4568888876654221 122 22345677777
Q ss_pred EEeC
Q 012294 390 CGKG 393 (466)
Q Consensus 390 ~~~~ 393 (466)
...|
T Consensus 307 LFGG 310 (392)
T KOG4693|consen 307 LFGG 310 (392)
T ss_pred EecC
Confidence 7765
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.20 E-value=7e-10 Score=119.22 Aligned_cols=218 Identities=16% Similarity=0.155 Sum_probs=151.1
Q ss_pred CCCCCCCceeeecCCcEEEEcCC-------c--eeeEe-----cCC----CCCCCccccceeeeeecccCCcEEEEeccc
Q 012294 129 NGRDSPSAIATTNYGTLHVSHGS-------K--ITSFD-----WSM----RKKSTILTHFTAVDSLLALSPGVAAAGATD 190 (466)
Q Consensus 129 ~~R~~~~a~~a~~~g~lyva~GG-------~--ve~YD-----W~~----a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~ 190 (466)
.+|..++ ++..++.+|+.+|. . +..+| |.. ...+.+|..+..++ ++.+||++||
T Consensus 59 ~~R~~hs--~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~----~~~~l~lfGG-- 130 (482)
T KOG0379|consen 59 IPRAGHS--AVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSA----VGDKLYLFGG-- 130 (482)
T ss_pred chhhccc--eeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEE----ECCeEEEEcc--
Confidence 6788888 55569999955442 1 34555 776 22356777777776 9999999999
Q ss_pred CC-CceeccceeeeeCCCCceeecCCC------CCceeEEEEECCeEEE-EecCCCc-CCCeeEEEecCC--CCcccccc
Q 012294 191 FS-GLQVLDLENGYVKETLNWENVTRS------SSTVQAIGSSDKHLFV-SFESGRR-NSNSIMVYDINS--LKPVNEIG 259 (466)
Q Consensus 191 ~~-g~~~l~svE~ydp~t~~W~~va~M------r~~~~Ava~l~~~IYa-Gg~~g~~-~l~sVE~YDp~t--~~~~~~~~ 259 (466)
.+ ....++.+-.||+.+.+|....+- |.++. +++.+++||+ ||.+... .+|.+.+||++| |+.+.+-|
T Consensus 131 ~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs-~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g 209 (482)
T KOG0379|consen 131 TDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS-ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQG 209 (482)
T ss_pred ccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce-EEEECCEEEEECCccCcccceeeeeeeccccccceecccCC
Confidence 44 345588899999999999877542 77776 7888999999 8875544 699999999999 33332222
Q ss_pred ccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC----cccccceeeecCCCce
Q 012294 260 QNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE----VDCFSDVTVSDNLSAI 335 (466)
Q Consensus 260 ~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~----~d~~~~~~v~~~~~~i 335 (466)
. .+.|-.....+..++.+|++||.+....+++.+-++|.++-+ |..... ..+|+.+.....+..+
T Consensus 210 ~---------~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~--W~~~~~~g~~p~~R~~h~~~~~~~~~ 278 (482)
T KOG0379|consen 210 E---------APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWE--WKLLPTGGDLPSPRSGHSLTVSGDHL 278 (482)
T ss_pred C---------CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccce--eeeccccCCCCCCcceeeeEEECCEE
Confidence 2 112222334556899999999988555588899999999944 663222 4466777777899999
Q ss_pred EEEEEeeCc-e-eEeeccccCC-CCCeEEeccCC
Q 012294 336 YKVGINSGE-V-SYMDLRKLGD-SSEWICLGDGR 366 (466)
Q Consensus 336 ~~v~~~~g~-l-~~~dlr~~~~-~~~W~~~~~~~ 366 (466)
|.+|+.... . -+.|+-.+.. ++.|..+..-.
T Consensus 279 ~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 279 LLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred EEEcCCcccccccccccccccccccceeeeeccc
Confidence 999984332 1 2244444433 67788887743
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.19 E-value=1.9e-09 Score=115.95 Aligned_cols=206 Identities=15% Similarity=0.153 Sum_probs=151.7
Q ss_pred CCCccccceeeeeecccCCcEEEEecccCCCceeccc--eeeeeCCCCceeecCCC------CCceeEEEEECCeEEE-E
Q 012294 163 KSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDL--ENGYVKETLNWENVTRS------SSTVQAIGSSDKHLFV-S 233 (466)
Q Consensus 163 m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~s--vE~ydp~t~~W~~va~M------r~~~~Ava~l~~~IYa-G 233 (466)
.+..|..|.++. +++++|+.|| ......+.. +-.+|..+..|+..+.- |.++. +++.+++||. |
T Consensus 57 ~p~~R~~hs~~~----~~~~~~vfGG--~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~-~~~~~~~l~lfG 129 (482)
T KOG0379|consen 57 GPIPRAGHSAVL----IGNKLYVFGG--YGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHS-LSAVGDKLYLFG 129 (482)
T ss_pred CcchhhccceeE----ECCEEEEECC--CCCCCccccceeEEeecCCcccccccccCCCCCccccee-EEEECCeEEEEc
Confidence 456688887777 7999999999 554444444 67779999999865532 66665 7889999999 8
Q ss_pred ecC-CCcCCCeeEEEecCCCCccccccccccccCCceeecCcc--------eeeEEeeCCeEEEEeecCCCCcccceEEE
Q 012294 234 FES-GRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT--------KLRWVSSYNLLLASGSHSDISKVTGNIKF 304 (466)
Q Consensus 234 g~~-g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~--------k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~ 304 (466)
|.+ ...+++.+-.||+.| ++ |....+. .......+++||+.||.+.....++.+-.
T Consensus 130 G~~~~~~~~~~l~~~d~~t-------~~--------W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i 194 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLST-------RT--------WSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHI 194 (482)
T ss_pred cccCCCCChhheEeccCCC-------Cc--------EEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeee
Confidence 876 355689999999999 33 4433322 23344678999999999887767889999
Q ss_pred EeCCCCeeeeEEcCC----cccccceeeecCCCceEEEEEee-CceeEeeccccCC-CCCeEEeccCCccccccccccce
Q 012294 305 WDIRSGNVAWEVKDE----VDCFSDVTVSDNLSAIYKVGINS-GEVSYMDLRKLGD-SSEWICLGDGRKMVNGKRKEGFG 378 (466)
Q Consensus 305 yDprt~~~vW~~~~~----~d~~~~~~v~~~~~~i~~v~~~~-g~l~~~dlr~~~~-~~~W~~~~~~~~~m~~~~~~~~~ 378 (466)
||+++.+ |+...- --+|.+.++..-+..+|.+++.+ ++.|+.|+-.+.- +-.|..+..... +- .+| ++
T Consensus 195 ~d~~~~~--W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~-~p--~~R-~~ 268 (482)
T KOG0379|consen 195 YDLETST--WSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGD-LP--SPR-SG 268 (482)
T ss_pred ecccccc--ceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCC-CC--CCc-ce
Confidence 9999999 988754 22567778888888999999866 6666666666553 345664443221 11 245 99
Q ss_pred eEEEEECCEEEEEeCCeE
Q 012294 379 CKIECHANQVFCGKGGEI 396 (466)
Q Consensus 379 ~~~~~~~~~lf~~~~~~~ 396 (466)
+.+++.+.++|+..|+..
T Consensus 269 h~~~~~~~~~~l~gG~~~ 286 (482)
T KOG0379|consen 269 HSLTVSGDHLLLFGGGTD 286 (482)
T ss_pred eeeEEECCEEEEEcCCcc
Confidence 999999999999988877
No 30
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.04 E-value=1.8e-10 Score=92.49 Aligned_cols=81 Identities=31% Similarity=0.411 Sum_probs=70.9
Q ss_pred eEEEEECCeEEEEeHHHhhccCCCCccccccCC-----C--c-eeEcCCchhHHHHhcccccCccccCCCCcChHHHHHh
Q 012294 24 IVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-----T--H-RFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEE 95 (466)
Q Consensus 24 ~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-----~--~-~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~E 95 (466)
+|+|+|||+.|.+||.+|++ .+++|.+|+.+ + . .+.|.+++.|+.+|+|+|++++.+++ .+...++++
T Consensus 1 dv~i~v~~~~~~~h~~iL~~--~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~--~~~~~l~~~ 76 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAA--CSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPE--ENVEELLEL 76 (90)
T ss_pred CeEEEECCEEEehHHHHHhh--cCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCH--HHHHHHHHH
Confidence 47899999999999999998 46799999985 1 2 47789999999999999999998743 378999999
Q ss_pred hccccchhhHHhh
Q 012294 96 SKFYNIESLLINS 108 (466)
Q Consensus 96 A~f~~l~~l~~~~ 108 (466)
|.||+++++.+.|
T Consensus 77 a~~~~~~~l~~~c 89 (90)
T smart00225 77 ADYLQIPGLVELC 89 (90)
T ss_pred HHHHCcHHHHhhh
Confidence 9999999999887
No 31
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.87 E-value=2.3e-08 Score=97.93 Aligned_cols=168 Identities=13% Similarity=0.129 Sum_probs=119.6
Q ss_pred cCCCCCCCCCceeeecCCcEEEEcCC-----c---eeeEe-----cCC----CCCCCccccceeeeeecccCCcEEEEec
Q 012294 126 LPLNGRDSPSAIATTNYGTLHVSHGS-----K---ITSFD-----WSM----RKKSTILTHFTAVDSLLALSPGVAAAGA 188 (466)
Q Consensus 126 l~~~~R~~~~a~~a~~~g~lyva~GG-----~---ve~YD-----W~~----a~m~~~R~~~~~v~sl~~l~~~lYaiGG 188 (466)
+-|-.|..++ ++..++.+|+-+|- . ..+|| |.. .-.+-.|..+.+++ +++.+|+.||
T Consensus 74 ~VPyqRYGHt--vV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV----~gn~MyiFGG 147 (392)
T KOG4693|consen 74 AVPYQRYGHT--VVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACV----WGNQMYIFGG 147 (392)
T ss_pred ccchhhcCce--EEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeE----ECcEEEEecC
Confidence 3337788888 78889999966441 1 24677 876 22467899999988 9999999999
Q ss_pred ccCCCc-ee-ccceeeeeCCCCceeecCC----C--CCceeEEEEECCeEEE-EecCCC---------cCCCeeEEEecC
Q 012294 189 TDFSGL-QV-LDLENGYVKETLNWENVTR----S--SSTVQAIGSSDKHLFV-SFESGR---------RNSNSIMVYDIN 250 (466)
Q Consensus 189 ~~~~g~-~~-l~svE~ydp~t~~W~~va~----M--r~~~~Ava~l~~~IYa-Gg~~g~---------~~l~sVE~YDp~ 250 (466)
+... +. -+.+-.+|..+-+|..+-. . |-.+. ++++++.+|+ ||.... .+.+.|..+|..
T Consensus 148 --ye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~-a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~ 224 (392)
T KOG4693|consen 148 --YEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHT-ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA 224 (392)
T ss_pred --hHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhh-hhhccceEEEeccccccCCCccchhhhhcceeEEEecc
Confidence 6422 22 3446677999999987643 2 55554 6889999999 885332 125688888988
Q ss_pred CCCccccccccccccCCceeecCc--ce------eeEEeeCCeEEEEeecCCCCc-ccceEEEEeCCCCeeeeEEcCC
Q 012294 251 SLKPVNEIGQNEIYGTDIESAIPA--TK------LRWVSSYNLLLASGSHSDISK-VTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 251 t~~~~~~~~~~~~~~~~~w~~~~~--~k------~~~~~~~~~Lyv~Gg~~g~~~-~~~sVe~yDprt~~~vW~~~~~ 319 (466)
| ..|...++ |+ ..-.+.+++||+-||++|.-. ..+..-+|||+|.. |+.+++
T Consensus 225 T---------------~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~--W~~I~~ 285 (392)
T KOG4693|consen 225 T---------------GAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSM--WSVISV 285 (392)
T ss_pred c---------------cccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccch--heeeec
Confidence 8 44555442 21 123358999999999999732 23468899999999 999877
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.63 E-value=2e-08 Score=72.97 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=40.0
Q ss_pred ccccceeeeeecccCCcEEEEecccCCC-ceeccceeeeeCCCCceeecCCC
Q 012294 166 ILTHFTAVDSLLALSPGVAAAGATDFSG-LQVLDLENGYVKETLNWENVTRS 216 (466)
Q Consensus 166 ~R~~~~~v~sl~~l~~~lYaiGG~~~~g-~~~l~svE~ydp~t~~W~~va~M 216 (466)
+|+++++++ ++++||++|| +++ ...++++|+||+.+++|+.+++|
T Consensus 1 pR~~~~~~~----~~~~iyv~GG--~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVV----VGNKIYVIGG--YDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEE----ETTEEEEEEE--BESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEE----ECCEEEEEee--ecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 478888887 9999999999 777 77899999999999999999887
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.61 E-value=1.3e-06 Score=90.23 Aligned_cols=181 Identities=15% Similarity=0.240 Sum_probs=120.3
Q ss_pred cCC---CCCCCccccceeeeeecccCCcEEEEecccCC-----CceeccceeeeeCCCCceeecCCC-----CCceeEEE
Q 012294 158 WSM---RKKSTILTHFTAVDSLLALSPGVAAAGATDFS-----GLQVLDLENGYVKETLNWENVTRS-----SSTVQAIG 224 (466)
Q Consensus 158 W~~---a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~-----g~~~l~svE~ydp~t~~W~~va~M-----r~~~~Ava 224 (466)
|.. ++.+++|+.|.+|+ +-.+.+|+.||. |. -.+.++..-.+|..+++|+.+.-- |+.+- ++
T Consensus 110 Wkk~~spn~P~pRsshq~va---~~s~~l~~fGGE-faSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHR-Mv 184 (521)
T KOG1230|consen 110 WKKVVSPNAPPPRSSHQAVA---VPSNILWLFGGE-FASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHR-MV 184 (521)
T ss_pred eeEeccCCCcCCCccceeEE---eccCeEEEeccc-cCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccce-eE
Confidence 987 55678899988887 345899999993 32 123466677889999999988643 88877 78
Q ss_pred EECCeEEE--EecCCC---cCCCeeEEEecCC--CCccccccccccccCCceeecCcceeeEEee-CCeEEEEeecCCCC
Q 012294 225 SSDKHLFV--SFESGR---RNSNSIMVYDINS--LKPVNEIGQNEIYGTDIESAIPATKLRWVSS-YNLLLASGSHSDIS 296 (466)
Q Consensus 225 ~l~~~IYa--Gg~~g~---~~l~sVE~YDp~t--~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~-~~~Lyv~Gg~~g~~ 296 (466)
+...+|+. ||++.. .+.|.|.+||.+| |+-+.+=|. |. .|-...+..+. +|-||+-|||+-..
T Consensus 185 awK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga--------~P-tpRSGcq~~vtpqg~i~vyGGYsK~~ 255 (521)
T KOG1230|consen 185 AWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA--------GP-TPRSGCQFSVTPQGGIVVYGGYSKQR 255 (521)
T ss_pred EeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC--------CC-CCCCcceEEecCCCcEEEEcchhHhh
Confidence 88888777 665443 3489999999999 444333111 11 11223455555 99999999987332
Q ss_pred --------cccceEEEEeCCCC---eeeeEEcCC----cccccceee--ecCCCceEEEEEee-------------Ccee
Q 012294 297 --------KVTGNIKFWDIRSG---NVAWEVKDE----VDCFSDVTV--SDNLSAIYKVGINS-------------GEVS 346 (466)
Q Consensus 297 --------~~~~sVe~yDprt~---~~vW~~~~~----~d~~~~~~v--~~~~~~i~~v~~~~-------------g~l~ 346 (466)
..+..+=+.+|++| +=||+-.-| -.+|++++| ...+.++|=-||.+ .+||
T Consensus 256 ~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy 335 (521)
T KOG1230|consen 256 VKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLY 335 (521)
T ss_pred hhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhh
Confidence 13445778888874 533444333 345666544 44667777666655 6788
Q ss_pred Eeeccc
Q 012294 347 YMDLRK 352 (466)
Q Consensus 347 ~~dlr~ 352 (466)
|.||-+
T Consensus 336 ~fdlt~ 341 (521)
T KOG1230|consen 336 FFDLTR 341 (521)
T ss_pred heeccc
Confidence 888865
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.58 E-value=3.4e-06 Score=87.16 Aligned_cols=206 Identities=14% Similarity=0.167 Sum_probs=136.6
Q ss_pred CCCCccccceeeeeecccCCcEEEEecccCCCc--eeccceeeeeCCCCceeecCCC-----CCceeEEEEECCeEEE-E
Q 012294 162 KKSTILTHFTAVDSLLALSPGVAAAGATDFSGL--QVLDLENGYVKETLNWENVTRS-----SSTVQAIGSSDKHLFV-S 233 (466)
Q Consensus 162 ~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~--~~l~svE~ydp~t~~W~~va~M-----r~~~~Ava~l~~~IYa-G 233 (466)
+.+++|+++...+ .=....|++.||.=++|. +.++..=.||..+++|..+.+. |+++.|||+-.|.+|+ |
T Consensus 62 ~~PspRsn~sl~~--nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 62 PPPSPRSNPSLFA--NPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCcceee--ccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence 3445566543332 013346888888555654 4577788999999999987543 8899888888799999 8
Q ss_pred ecCCC------cCCCeeEEEecCCCCccccccccccccCCceeecCcc-------eeeEEeeCCeEEEEeecCCCC---c
Q 012294 234 FESGR------RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT-------KLRWVSSYNLLLASGSHSDIS---K 297 (466)
Q Consensus 234 g~~g~------~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~-------k~~~~~~~~~Lyv~Gg~~g~~---~ 297 (466)
|.-.+ ..-+..-.+|..| .+|+.+... ....+...+.|+.-||+-... .
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~t---------------rkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~ 204 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKT---------------RKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYI 204 (521)
T ss_pred cccCCcchhhhhhhhheeeeeecc---------------chheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceE
Confidence 86221 1246778888888 456555422 233455788999999965443 3
Q ss_pred ccceEEEEeCCCCeeeeEEcCC----cccccceeeecC-CCceEEEEEeeC--------------ceeEeeccccCCCCC
Q 012294 298 VTGNIKFWDIRSGNVAWEVKDE----VDCFSDVTVSDN-LSAIYKVGINSG--------------EVSYMDLRKLGDSSE 358 (466)
Q Consensus 298 ~~~sVe~yDprt~~~vW~~~~~----~d~~~~~~v~~~-~~~i~~v~~~~g--------------~l~~~dlr~~~~~~~ 358 (466)
|.+.|-+||..|=+ |+-.++ -++|+++.+.+. .+.||+-|+++- +++.++++.. +.|.
T Consensus 205 YyNDvy~FdLdtyk--W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~-~~dK 281 (521)
T KOG1230|consen 205 YYNDVYAFDLDTYK--WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDG-REDK 281 (521)
T ss_pred EeeeeEEEecccee--eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcC-CCcc
Confidence 66789999999988 998887 467888888887 788898888653 3444444442 2566
Q ss_pred eEEeccCCcc-ccccccccceeEEEEECC-EEEE
Q 012294 359 WICLGDGRKM-VNGKRKEGFGCKIECHAN-QVFC 390 (466)
Q Consensus 359 W~~~~~~~~~-m~~~~~~~~~~~~~~~~~-~lf~ 390 (466)
|+ |..-++. |+- .+| +|..++.+.+ |-+.
T Consensus 282 w~-W~kvkp~g~kP-spR-sgfsv~va~n~kal~ 312 (521)
T KOG1230|consen 282 WV-WTKVKPSGVKP-SPR-SGFSVAVAKNHKALF 312 (521)
T ss_pred ee-EeeccCCCCCC-CCC-CceeEEEecCCceEE
Confidence 76 4443332 332 467 7777777765 4443
No 35
>PF13964 Kelch_6: Kelch motif
Probab=98.57 E-value=7.5e-08 Score=71.27 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=40.0
Q ss_pred ccccceeeeeecccCCcEEEEecccCCC-ceeccceeeeeCCCCceeecCCC
Q 012294 166 ILTHFTAVDSLLALSPGVAAAGATDFSG-LQVLDLENGYVKETLNWENVTRS 216 (466)
Q Consensus 166 ~R~~~~~v~sl~~l~~~lYaiGG~~~~g-~~~l~svE~ydp~t~~W~~va~M 216 (466)
+|.++++++ ++++||++|| ... ...++.+++|||++++|+.+++|
T Consensus 1 pR~~~s~v~----~~~~iyv~GG--~~~~~~~~~~v~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVV----VGGKIYVFGG--YDNSGKYSNDVERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEE----ECCEEEEECC--CCCCCCccccEEEEcCCCCcEEECCCC
Confidence 477787777 9999999999 666 66789999999999999999999
No 36
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.57 E-value=2.9e-08 Score=100.37 Aligned_cols=82 Identities=28% Similarity=0.449 Sum_probs=71.4
Q ss_pred CCCeEEEEECCeEEEEeHHHhhccCCCCccccc------cCC--CceeEcCCchhHHHHhcccccC-ccccCCCCcChHH
Q 012294 21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKL------ADS--THRFIDRDPELFSILLSLLRTG-NLPSKAKAFDIED 91 (466)
Q Consensus 21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~m------f~~--~~~fiDRDp~~F~~IL~ylrtG-~l~~~~~~~~~~~ 91 (466)
..++|+|||.|-+|+|...||++ +|+++|..- |.. ++||+||+...|..||.|+++| +|.- |-+.+..-
T Consensus 59 ~~ervvINisGlRFeTql~TL~q-fP~TLLGDp~kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlrR-PvnVPlDi 136 (507)
T KOG1545|consen 59 CCERVVINISGLRFETQLKTLAQ-FPNTLLGDPAKRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRR-PVNVPLDI 136 (507)
T ss_pred cccEEEEEeccceehHHHHHHhh-CchhhcCCHHHhcccccccchhhcccCCCCccceEEEEeecCceecC-CccccHHH
Confidence 45899999999999999999999 999999863 322 5799999999999999999985 6664 66778899
Q ss_pred HHHhhccccchhh
Q 012294 92 LIEESKFYNIESL 104 (466)
Q Consensus 92 Ll~EA~f~~l~~l 104 (466)
+++|.+||||.+-
T Consensus 137 F~eEirFyqlG~e 149 (507)
T KOG1545|consen 137 FLEEIRFYQLGDE 149 (507)
T ss_pred HHHHHHHHHhhHH
Confidence 9999999999874
No 37
>smart00612 Kelch Kelch domain.
Probab=98.36 E-value=6.4e-07 Score=64.07 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=36.6
Q ss_pred cEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECC
Q 012294 182 GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDK 228 (466)
Q Consensus 182 ~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~ 228 (466)
+||++|| +++...++.+|+|||.+++|+.+++| |..++ ++++++
T Consensus 1 ~iyv~GG--~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~-~~~~~g 47 (47)
T smart00612 1 KIYVVGG--FDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHG-VAVING 47 (47)
T ss_pred CEEEEeC--CCCCceeeeEEEECCCCCeEccCCCCCCccccce-EEEeCC
Confidence 4899999 76666789999999999999999999 66665 666654
No 38
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.25 E-value=6.2e-07 Score=76.04 Aligned_cols=86 Identities=27% Similarity=0.390 Sum_probs=71.0
Q ss_pred CCCeEEEEEC-CeEEEEeHHHhhccCCCCccccccCCC-----c---e-eEcCCchhHHHHhcccccCccccCCCCcChH
Q 012294 21 DSNIVTIDVG-GQIFQTTKQTLALAGPKSLLSKLADST-----H---R-FIDRDPELFSILLSLLRTGNLPSKAKAFDIE 90 (466)
Q Consensus 21 ~~~~V~LnVG-G~~F~t~~~tL~~~~p~s~f~~mf~~~-----~---~-fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~ 90 (466)
...+++|.|+ |+.|.+||.+|+.+ ++||+.||+.+ + + +-|-+++.|..+|+|+|+|++.+. ...++.
T Consensus 9 ~~~D~~i~v~d~~~~~vhk~iL~~~--S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~-~~~~~~ 85 (111)
T PF00651_consen 9 EFSDVTIRVGDGKTFYVHKNILAAR--SPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN-SDENVE 85 (111)
T ss_dssp TS--EEEEETTTEEEEE-HHHHHHH--BHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE--TTTHH
T ss_pred CCCCEEEEECCCEEEeechhhhhcc--chhhhhcccccccccccccccccccccccccccccccccCCcccCC-HHHHHH
Confidence 4579999999 89999999999984 56999999862 1 3 567899999999999999998873 356789
Q ss_pred HHHHhhccccchhhHHhhc
Q 012294 91 DLIEESKFYNIESLLINSQ 109 (466)
Q Consensus 91 ~Ll~EA~f~~l~~l~~~~~ 109 (466)
.+++-|.+|+++.|.+.|.
T Consensus 86 ~ll~lA~~~~~~~L~~~~~ 104 (111)
T PF00651_consen 86 ELLELADKLQIPELKKACE 104 (111)
T ss_dssp HHHHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHH
Confidence 9999999999999999883
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.22 E-value=1.8e-06 Score=62.64 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=35.7
Q ss_pred CCceeEEEEECCeEEE-EecCC-CcCCCeeEEEecCCCCccccccccccccCCceeecCcc
Q 012294 217 SSTVQAIGSSDKHLFV-SFESG-RRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT 275 (466)
Q Consensus 217 r~~~~Ava~l~~~IYa-Gg~~g-~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~ 275 (466)
|..++ +++++++||+ ||.+. ...+++||+||+++ +.|..+++|
T Consensus 2 R~~~~-~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~---------------~~W~~~~~m 46 (47)
T PF01344_consen 2 RSGHA-AVVVGNKIYVIGGYDGNNQPTNSVEVYDPET---------------NTWEELPPM 46 (47)
T ss_dssp BBSEE-EEEETTEEEEEEEBESTSSBEEEEEEEETTT---------------TEEEEEEEE
T ss_pred CccCE-EEEECCEEEEEeeecccCceeeeEEEEeCCC---------------CEEEEcCCC
Confidence 44555 8999999999 88766 55699999999999 779988776
No 40
>PF13964 Kelch_6: Kelch motif
Probab=98.21 E-value=1.9e-06 Score=63.63 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=36.7
Q ss_pred CCceeEEEEECCeEEE-EecCC-CcCCCeeEEEecCCCCccccccccccccCCceeecCccee
Q 012294 217 SSTVQAIGSSDKHLFV-SFESG-RRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL 277 (466)
Q Consensus 217 r~~~~Ava~l~~~IYa-Gg~~g-~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~ 277 (466)
|..++ +++++++||+ ||.+. ...++.|++|||+| +.|+.+++|..
T Consensus 2 R~~~s-~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t---------------~~W~~~~~mp~ 48 (50)
T PF13964_consen 2 RYGHS-AVVVGGKIYVFGGYDNSGKYSNDVERYDPET---------------NTWEQLPPMPT 48 (50)
T ss_pred CccCE-EEEECCEEEEECCCCCCCCccccEEEEcCCC---------------CcEEECCCCCC
Confidence 34455 7889999999 88766 45589999999999 77999988864
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.05 E-value=5.8e-06 Score=60.99 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=38.5
Q ss_pred ccccceeeeeecccCCcEEEEecccC---CCceeccceeeeeCCCCceeecCCC
Q 012294 166 ILTHFTAVDSLLALSPGVAAAGATDF---SGLQVLDLENGYVKETLNWENVTRS 216 (466)
Q Consensus 166 ~R~~~~~v~sl~~l~~~lYaiGG~~~---~g~~~l~svE~ydp~t~~W~~va~M 216 (466)
+|..+.+++ ++++||++|| + .+...++.++.||+++++|+.+++|
T Consensus 1 ~r~~hs~~~----~~~kiyv~GG--~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVV----LDGKIYVFGG--YGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEE----ECCEEEEECC--cccCCCCcccceeEEEECCCCEEeecCCC
Confidence 467777776 9999999999 6 4556788999999999999999886
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.95 E-value=0.011 Score=55.00 Aligned_cols=226 Identities=17% Similarity=0.265 Sum_probs=125.0
Q ss_pred eecccCC-cEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEECC-eEEE-EecCCCcCCCeeEEEecC
Q 012294 175 SLLALSP-GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSDK-HLFV-SFESGRRNSNSIMVYDIN 250 (466)
Q Consensus 175 sl~~l~~-~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~~-~IYa-Gg~~g~~~l~sVE~YDp~ 250 (466)
.+.+... ..+++++ .+| .+..||..+.+-...-.. .....++....+ .+++ ++. ...+..||..
T Consensus 56 ~~~~~~~~~~l~~~~--~~~-----~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~i~~~~~~ 123 (289)
T cd00200 56 DVAASADGTYLASGS--SDK-----TIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR-----DKTIKVWDVE 123 (289)
T ss_pred EEEECCCCCEEEEEc--CCC-----eEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecC-----CCeEEEEECC
Confidence 3334443 4667776 444 344566554321111111 222332444443 4555 442 3578899998
Q ss_pred CCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeec
Q 012294 251 SLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSD 330 (466)
Q Consensus 251 t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~ 330 (466)
+.+++..+... . .....+.+.+. +.++++|.. .+.|.+||.++++.+..+..+......+...+
T Consensus 124 ~~~~~~~~~~~-----~----~~i~~~~~~~~-~~~l~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 187 (289)
T cd00200 124 TGKCLTTLRGH-----T----DWVNSVAFSPD-GTFVASSSQ------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP 187 (289)
T ss_pred CcEEEEEeccC-----C----CcEEEEEEcCc-CCEEEEEcC------CCcEEEEEccccccceeEecCccccceEEECC
Confidence 74433333310 0 01233444443 455555542 34799999999998888877776778888888
Q ss_pred CCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEEC-CEEEEEe--CCeEEEeEeeeecCC
Q 012294 331 NLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHA-NQVFCGK--GGEIELWSEIVMGSR 407 (466)
Q Consensus 331 ~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~-~~lf~~~--~~~~~v~~~~~~~~~ 407 (466)
++..|+ +++.+|.+.+.|++.... +.. ... ... .-..++... ++++++- ++.|.+|.-- .
T Consensus 188 ~~~~l~-~~~~~~~i~i~d~~~~~~------~~~----~~~-~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~----~ 250 (289)
T cd00200 188 DGEKLL-SSSSDGTIKLWDLSTGKC------LGT----LRG-HEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLR----T 250 (289)
T ss_pred CcCEEE-EecCCCcEEEEECCCCce------ecc----hhh-cCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcC----C
Confidence 887766 555699999999987331 111 100 011 112233332 4555554 7899999753 1
Q ss_pred CCCCCCCcccceeeccccCccccCCCCceEEEeeecc-eeEEEeeccceEEEec
Q 012294 408 KSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQ 460 (466)
Q Consensus 408 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~ 460 (466)
. . ....+. ...+.|..+++-.+ +++++=.+...+.||+
T Consensus 251 ~-----~-~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 251 G-----E-CVQTLS---------GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred c-----e-eEEEcc---------ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 1 0 111111 13457999988875 5666666666899995
No 43
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.78 E-value=0.017 Score=60.33 Aligned_cols=242 Identities=13% Similarity=0.153 Sum_probs=134.3
Q ss_pred eecCCcEEEEcC-CceeeEe-------cCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCC-
Q 012294 139 TTNYGTLHVSHG-SKITSFD-------WSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETL- 208 (466)
Q Consensus 139 a~~~g~lyva~G-G~ve~YD-------W~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~- 208 (466)
+..++.+|+... |.+.++| |.. .+- ...+ ..+ +.++.+|+..+ +| .+-++|+.+.
T Consensus 117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~s--sP~----v~~~~v~v~~~---~g-----~l~ald~~tG~ 181 (394)
T PRK11138 117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALS--RPV----VSDGLVLVHTS---NG-----MLQALNESDGA 181 (394)
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceec--CCE----EECCEEEEECC---CC-----EEEEEEccCCC
Confidence 445778885422 4567787 877 321 1111 122 25777776443 22 3567777655
Q ss_pred -ceeecCC---C--CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC--c------
Q 012294 209 -NWENVTR---S--SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP--A------ 274 (466)
Q Consensus 209 -~W~~va~---M--r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~--~------ 274 (466)
.|+.-.. + +.... -++.++.+|++..+ ..+-.+|+++ |+ ..|+.-. +
T Consensus 182 ~~W~~~~~~~~~~~~~~~s-P~v~~~~v~~~~~~-----g~v~a~d~~~-------G~------~~W~~~~~~~~~~~~~ 242 (394)
T PRK11138 182 VKWTVNLDVPSLTLRGESA-PATAFGGAIVGGDN-----GRVSAVLMEQ-------GQ------LIWQQRISQPTGATEI 242 (394)
T ss_pred EeeeecCCCCcccccCCCC-CEEECCEEEEEcCC-----CEEEEEEccC-------Ch------hhheeccccCCCccch
Confidence 4875432 1 22222 35568889985432 3577889988 43 2244210 0
Q ss_pred -----ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEee
Q 012294 275 -----TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMD 349 (466)
Q Consensus 275 -----~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~d 349 (466)
....-+..++.||+++. .+.+-++|+.+++++|+..-.. .. .+...+..|| ++..+|.|+.+|
T Consensus 243 ~~~~~~~~sP~v~~~~vy~~~~-------~g~l~ald~~tG~~~W~~~~~~--~~--~~~~~~~~vy-~~~~~g~l~ald 310 (394)
T PRK11138 243 DRLVDVDTTPVVVGGVVYALAY-------NGNLVALDLRSGQIVWKREYGS--VN--DFAVDGGRIY-LVDQNDRVYALD 310 (394)
T ss_pred hcccccCCCcEEECCEEEEEEc-------CCeEEEEECCCCCEEEeecCCC--cc--CcEEECCEEE-EEcCCCeEEEEE
Confidence 00111236899998663 3479999999999999874221 11 2344677888 566889999999
Q ss_pred ccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeC-CeEEEeEeeeecCCCCCCCCCcccceeeccccCcc
Q 012294 350 LRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG-GEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRV 428 (466)
Q Consensus 350 lr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 428 (466)
+..-+ .-| .. ++ .. .+ .....++++|.||+... |.|.+... .. .+.+.|.+..
T Consensus 311 ~~tG~--~~W---~~-~~-~~---~~-~~~sp~v~~g~l~v~~~~G~l~~ld~-----~t-------G~~~~~~~~~--- 364 (394)
T PRK11138 311 TRGGV--ELW---SQ-SD-LL---HR-LLTAPVLYNGYLVVGDSEGYLHWINR-----ED-------GRFVAQQKVD--- 364 (394)
T ss_pred CCCCc--EEE---cc-cc-cC---CC-cccCCEEECCEEEEEeCCCEEEEEEC-----CC-------CCEEEEEEcC---
Confidence 97633 234 32 10 11 11 23345568999998744 44554332 11 2334443221
Q ss_pred ccCCCCceEEEeeecceeEEEeeccce
Q 012294 429 TDMGGSKITNLSFGGNKMFVTRKGQQT 455 (466)
Q Consensus 429 ~~~~~~~i~~~~~gg~r~f~~~~~~~~ 455 (466)
..+.-..-.+.|+||||.-.|-+.
T Consensus 365 ---~~~~~s~P~~~~~~l~v~t~~G~l 388 (394)
T PRK11138 365 ---SSGFLSEPVVADDKLLIQARDGTV 388 (394)
T ss_pred ---CCcceeCCEEECCEEEEEeCCceE
Confidence 122334445668899998665443
No 44
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.72 E-value=0.0054 Score=64.06 Aligned_cols=140 Identities=11% Similarity=0.153 Sum_probs=88.0
Q ss_pred EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceE
Q 012294 223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNI 302 (466)
Q Consensus 223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sV 302 (466)
-++.++.||++..+ ..+-++|+.+ |+ ..|+.--......+..++.||+... .+.+
T Consensus 252 P~v~~~~vy~~~~~-----g~l~ald~~t-------G~------~~W~~~~~~~~~~~~~~~~vy~~~~-------~g~l 306 (394)
T PRK11138 252 PVVVGGVVYALAYN-----GNLVALDLRS-------GQ------IVWKREYGSVNDFAVDGGRIYLVDQ-------NDRV 306 (394)
T ss_pred cEEECCEEEEEEcC-----CeEEEEECCC-------CC------EEEeecCCCccCcEEECCEEEEEcC-------CCeE
Confidence 34678999994332 4678999999 54 3366422211223457899999764 4579
Q ss_pred EEEeCCCCeeeeEEcCCcc-cccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEE
Q 012294 303 KFWDIRSGNVAWEVKDEVD-CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKI 381 (466)
Q Consensus 303 e~yDprt~~~vW~~~~~~d-~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~ 381 (466)
-++|+.+++.+|+...... ..+...+ .++.|| ++..+|.|+++|...-+ +.+.. +. . ..+.....
T Consensus 307 ~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~-v~~~~G~l~~ld~~tG~-----~~~~~--~~-~---~~~~~s~P 372 (394)
T PRK11138 307 YALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLV-VGDSEGYLHWINREDGR-----FVAQQ--KV-D---SSGFLSEP 372 (394)
T ss_pred EEEECCCCcEEEcccccCCCcccCCEE--ECCEEE-EEeCCCEEEEEECCCCC-----EEEEE--Ec-C---CCcceeCC
Confidence 9999999999998753321 1222222 466777 78899999999988733 22221 11 1 11234455
Q ss_pred EEECCEEEEE-eCCeEEEeEe
Q 012294 382 ECHANQVFCG-KGGEIELWSE 401 (466)
Q Consensus 382 ~~~~~~lf~~-~~~~~~v~~~ 401 (466)
+..+++||+. ++|.|-.+..
T Consensus 373 ~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 373 VVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEECCEEEEEeCCceEEEEeC
Confidence 5689999987 6666766553
No 45
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.72 E-value=0.0062 Score=62.87 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=84.9
Q ss_pred EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceE
Q 012294 223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNI 302 (466)
Q Consensus 223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sV 302 (466)
..+.++.||++.. ...+-+||+++ |+ -.|..-......-+..++.||+... .+.+
T Consensus 237 p~~~~~~vy~~~~-----~g~l~a~d~~t-------G~------~~W~~~~~~~~~p~~~~~~vyv~~~-------~G~l 291 (377)
T TIGR03300 237 PVVDGGQVYAVSY-----QGRVAALDLRS-------GR------VLWKRDASSYQGPAVDDNRLYVTDA-------DGVV 291 (377)
T ss_pred cEEECCEEEEEEc-----CCEEEEEECCC-------Cc------EEEeeccCCccCceEeCCEEEEECC-------CCeE
Confidence 3456889999443 24688999998 44 2365422111122246899998753 4579
Q ss_pred EEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEE
Q 012294 303 KFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKI 381 (466)
Q Consensus 303 e~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~ 381 (466)
.++|+.+++.+|+.... ....+...+ .+..|| ++..+|.|++.|.++-+ -.|. +.- . ..+.....
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~-~~~~~G~l~~~d~~tG~--~~~~-~~~-----~---~~~~~~sp 357 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLV-VGDFEGYLHWLSREDGS--FVAR-LKT-----D---GSGIASPP 357 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEE--ECCEEE-EEeCCCEEEEEECCCCC--EEEE-EEc-----C---CCccccCC
Confidence 99999999999998432 222333333 456777 67799999999987744 2232 110 0 11134555
Q ss_pred EEECCEEEEE-eCCeEEEe
Q 012294 382 ECHANQVFCG-KGGEIELW 399 (466)
Q Consensus 382 ~~~~~~lf~~-~~~~~~v~ 399 (466)
+.+++.||+. ++|.|..|
T Consensus 358 ~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 358 VVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEECCEEEEEeCCceEEEe
Confidence 6777888865 55566544
No 46
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.69 E-value=0.0093 Score=61.57 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=101.9
Q ss_pred cCCcEEEEecccCCCceeccceeeeeCCCC--ceeecCCCCCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccc
Q 012294 179 LSPGVAAAGATDFSGLQVLDLENGYVKETL--NWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVN 256 (466)
Q Consensus 179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~--~W~~va~Mr~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~ 256 (466)
.++.+|+.+. +| .+.++|+.+. .|+.-.+-+...+ .++.++.+|+|.. ...+.++|+.|
T Consensus 64 ~~~~v~v~~~---~g-----~v~a~d~~tG~~~W~~~~~~~~~~~-p~v~~~~v~v~~~-----~g~l~ald~~t----- 124 (377)
T TIGR03300 64 AGGKVYAADA---DG-----TVVALDAETGKRLWRVDLDERLSGG-VGADGGLVFVGTE-----KGEVIALDAED----- 124 (377)
T ss_pred ECCEEEEECC---CC-----eEEEEEccCCcEeeeecCCCCcccc-eEEcCCEEEEEcC-----CCEEEEEECCC-----
Confidence 6777776654 22 4667787644 5874333222223 5667889999544 34789999998
Q ss_pred cccccccccCCceeecCccee--eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccc-----cceeee
Q 012294 257 EIGQNEIYGTDIESAIPATKL--RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCF-----SDVTVS 329 (466)
Q Consensus 257 ~~~~~~~~~~~~w~~~~~~k~--~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~-----~~~~v~ 329 (466)
|+ -.|+.-..... .-+..++.+|+..+ .+.+.+||+++++++|+.......+ +...+.
T Consensus 125 --G~------~~W~~~~~~~~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~ 189 (377)
T TIGR03300 125 --GK------ELWRAKLSSEVLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA 189 (377)
T ss_pred --Cc------EeeeeccCceeecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE
Confidence 44 33654322111 11235788888643 4579999999999999986543211 122222
Q ss_pred cCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccc-cccccceeEEEEECCEEEEEe-CCeEEEeE
Q 012294 330 DNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNG-KRKEGFGCKIECHANQVFCGK-GGEIELWS 400 (466)
Q Consensus 330 ~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~-~~~~~~~~~~~~~~~~lf~~~-~~~~~v~~ 400 (466)
+..+| ++..+|.|+..|+++-. --|..--......+. .+..........+++.||++. ++.+-.|.
T Consensus 190 --~~~v~-~~~~~g~v~ald~~tG~--~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 190 --DGGVL-VGFAGGKLVALDLQTGQ--PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred --CCEEE-EECCCCEEEEEEccCCC--EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 23444 67788999999998733 345431110000000 000001233445688888764 55555543
No 47
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65 E-value=0.0019 Score=66.30 Aligned_cols=227 Identities=15% Similarity=0.139 Sum_probs=132.7
Q ss_pred eecCCcEEEEcC--Cce-eeEe-------cCC-CCC-CCccccceeeeeecccCCcEEEEecccCC-----Cceecccee
Q 012294 139 TTNYGTLHVSHG--SKI-TSFD-------WSM-RKK-STILTHFTAVDSLLALSPGVAAAGATDFS-----GLQVLDLEN 201 (466)
Q Consensus 139 a~~~g~lyva~G--G~v-e~YD-------W~~-a~m-~~~R~~~~~v~sl~~l~~~lYaiGG~~~~-----g~~~l~svE 201 (466)
+..++.+||..| |.. -..| |.. +.- ...|.....++ ++++||+.|| +. -.+.++.+-
T Consensus 43 a~ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~----~~~kLyvFgG--~Gk~~~~~~~~~nd~Y 116 (381)
T COG3055 43 ALIGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAV----IGGKLYVFGG--YGKSVSSSPQVFNDAY 116 (381)
T ss_pred ceecceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccchhee----eCCeEEEeec--cccCCCCCceEeeeeE
Confidence 445679998888 321 1223 988 543 45566655554 9999999999 53 235678888
Q ss_pred eeeCCCCceeecCCC--CCceeEE-EEECC-eEEE-EecCC----------------------------------CcCCC
Q 012294 202 GYVKETLNWENVTRS--SSTVQAI-GSSDK-HLFV-SFESG----------------------------------RRNSN 242 (466)
Q Consensus 202 ~ydp~t~~W~~va~M--r~~~~Av-a~l~~-~IYa-Gg~~g----------------------------------~~~l~ 242 (466)
+|||.+|+|+.+... +-..++. +.+++ +||. ||.+- .....
T Consensus 117 ~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ 196 (381)
T COG3055 117 RYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNK 196 (381)
T ss_pred EecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccc
Confidence 999999999987654 3344433 45566 7888 77421 01134
Q ss_pred eeEEEecCCCCccccccccccccCCceeecCcce------eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE
Q 012294 243 SIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK------LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV 316 (466)
Q Consensus 243 sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k------~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~ 316 (466)
-|-.|||.+ +.|......+ ...+.-+|.|..+-|.=-|.-...-+-++|...+..-|.-
T Consensus 197 ev~sy~p~~---------------n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 197 EVLSYDPST---------------NQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred ccccccccc---------------chhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence 677888888 4444433111 1122247767777664444322335888999999878887
Q ss_pred cCC--------cccccceeeec-CCCceEEEEE---------eeCceeEee-ccccCC-------CCCeEEeccCCcccc
Q 012294 317 KDE--------VDCFSDVTVSD-NLSAIYKVGI---------NSGEVSYMD-LRKLGD-------SSEWICLGDGRKMVN 370 (466)
Q Consensus 317 ~~~--------~d~~~~~~v~~-~~~~i~~v~~---------~~g~l~~~d-lr~~~~-------~~~W~~~~~~~~~m~ 370 (466)
... .+-.|..=.-- .+..||.-|. +.|.+|.-+ |.+.=. .+.|-.+++ |.
T Consensus 262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~Ge----Lp 337 (381)
T COG3055 262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGE----LP 337 (381)
T ss_pred ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecc----cC
Confidence 632 01111110001 2222222221 344544444 332211 567888877 44
Q ss_pred ccccccceeEEEEECCEEEEEeC
Q 012294 371 GKRKEGFGCKIECHANQVFCGKG 393 (466)
Q Consensus 371 ~~~~~~~~~~~~~~~~~lf~~~~ 393 (466)
. .. +|-....+++.||+.-|
T Consensus 338 ~--~l-~YG~s~~~nn~vl~IGG 357 (381)
T COG3055 338 Q--GL-AYGVSLSYNNKVLLIGG 357 (381)
T ss_pred C--Cc-cceEEEecCCcEEEEcc
Confidence 2 22 88888999999999887
No 48
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.59 E-value=0.00013 Score=53.71 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=32.8
Q ss_pred eeEEEEECCeEEE-Eec---CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcc
Q 012294 220 VQAIGSSDKHLFV-SFE---SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT 275 (466)
Q Consensus 220 ~~Ava~l~~~IYa-Gg~---~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~ 275 (466)
..++++++++||+ ||. ......+.+++||++| +.|+.+++|
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t---------------~~W~~~~~~ 48 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTET---------------NQWTELSPM 48 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCC---------------CEEeecCCC
Confidence 3447899999999 877 4445589999999999 678877665
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.58 E-value=0.042 Score=62.85 Aligned_cols=237 Identities=14% Similarity=0.158 Sum_probs=125.0
Q ss_pred CcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE--CCeEEE-EecCCCcCCCeeEEEecCCCCccc
Q 012294 181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS--DKHLFV-SFESGRRNSNSIMVYDINSLKPVN 256 (466)
Q Consensus 181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l--~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~ 256 (466)
+...|.|+ ++|. +..||..+.+-...-.. ...+-+++.. ++.+++ |+. ..+|-.||..+.+.+.
T Consensus 545 ~~~las~~--~Dg~-----v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-----Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 545 KSQVASSN--FEGV-----VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-----DGSVKLWSINQGVSIG 612 (793)
T ss_pred CCEEEEEe--CCCe-----EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-----CCEEEEEECCCCcEEE
Confidence 45677777 6653 55566655432111111 2333335554 455555 655 3578999998844333
Q ss_pred cccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe-eeeEEcCCcccccceeeecCCCce
Q 012294 257 EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN-VAWEVKDEVDCFSDVTVSDNLSAI 335 (466)
Q Consensus 257 ~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~-~vW~~~~~~d~~~~~~v~~~~~~i 335 (466)
.+.... ....+.|..-++.++++|+.|| +|.+||.++.+ .+-.+..|......+... ++. .
T Consensus 613 ~~~~~~----------~v~~v~~~~~~g~~latgs~dg------~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~ 674 (793)
T PLN00181 613 TIKTKA----------NICCVQFPSESGRSLAFGSADH------KVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-T 674 (793)
T ss_pred EEecCC----------CeEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-E
Confidence 332210 1233455555678888888544 79999999876 345666676566666664 333 4
Q ss_pred EEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEE--eCCeEEEeEeeeecCCCCCCCC
Q 012294 336 YKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG--KGGEIELWSEIVMGSRKSREGG 413 (466)
Q Consensus 336 ~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~ 413 (466)
+..++.+|.|-+-|++.-.....|.++.. ..+ ......+.-....++++++ .++.|-||..-...
T Consensus 675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~----~~g-h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~-------- 741 (793)
T PLN00181 675 LVSSSTDNTLKLWDLSMSISGINETPLHS----FMG-HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM-------- 741 (793)
T ss_pred EEEEECCCEEEEEeCCCCccccCCcceEE----EcC-CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC--------
Confidence 55788999999999986432222333332 111 0000111112223444443 67899999753100
Q ss_pred Ccccceeec--cccCccccCCCCceEEEeeecc-eeEEEeeccceEEEec
Q 012294 414 PLEERVFRK--NLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQ 460 (466)
Q Consensus 414 ~~~~~~~r~--~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~ 460 (466)
.+....+.. ...+...+.....|.++.+-++ .++++=.+...|.|||
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 000000000 0011112234456888877433 4566666677799997
No 50
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.54 E-value=0.06 Score=51.97 Aligned_cols=230 Identities=14% Similarity=0.097 Sum_probs=121.0
Q ss_pred cEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCCCCcccccc
Q 012294 182 GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIG 259 (466)
Q Consensus 182 ~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~ 259 (466)
.+|+.++ .++ .+-.||+.+.+....-+.......++.. ++.+|+++. ..+.+..||+.+.+.+..+.
T Consensus 44 ~l~~~~~--~~~-----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~----~~~~l~~~d~~~~~~~~~~~ 112 (300)
T TIGR03866 44 LLYVCAS--DSD-----TIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE----DDNLVTVIDIETRKVLAEIP 112 (300)
T ss_pred EEEEEEC--CCC-----eEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC----CCCeEEEEECCCCeEEeEee
Confidence 3677766 332 3556777776654322221111113333 235887322 13578999998844443332
Q ss_pred ccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEE
Q 012294 260 QNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVG 339 (466)
Q Consensus 260 ~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~ 339 (466)
.. ..+..+.+.+ ++.+++++..++ ..+..||.++++++.+..... ....+..++++..||..+
T Consensus 113 ~~----------~~~~~~~~~~-dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 113 VG----------VEPEGMAVSP-DGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQ-RPRFAEFTADGKELWVSS 175 (300)
T ss_pred CC----------CCcceEEECC-CCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCC-CccEEEECCCCCEEEEEc
Confidence 10 0123344544 444455554222 246778999988765543222 223467788998888766
Q ss_pred EeeCceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEEEECCEEEEEe--CCeEEEeEeeeecCCCCCCCCCcc
Q 012294 340 INSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCGK--GGEIELWSEIVMGSRKSREGGPLE 416 (466)
Q Consensus 340 ~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~~--~~~~~v~~~~~~~~~~~~~~~~~~ 416 (466)
..+|.+++.|+++.+... .+....+.... .... .+..+.--+..+|++. ++.|.||..- .. .
T Consensus 176 ~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~-~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~----~~-----~-- 240 (300)
T TIGR03866 176 EIGGTVSVIDVATRKVIK---KITFEIPGVHP-EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK----TY-----E-- 240 (300)
T ss_pred CCCCEEEEEEcCcceeee---eeeeccccccc-ccCCccceEECCCCCEEEEEcCCCCeEEEEECC----CC-----c--
Confidence 689999999998744211 11110000000 0000 1222233345667753 4568888531 11 1
Q ss_pred cceeeccccCccccCCCCceEEEee--ecceeEEEeeccceEEEeccCC
Q 012294 417 ERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEVWQSSS 463 (466)
Q Consensus 417 ~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~~ 463 (466)
+ ++.. ..++.|..+++ .|.+|+++=.+...|-||+...
T Consensus 241 --~-~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 241 --V-LDYL------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred --E-EEEE------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 1 1111 12345766666 8899998755566799998754
No 51
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.52 E-value=0.03 Score=56.19 Aligned_cols=187 Identities=18% Similarity=0.239 Sum_probs=122.5
Q ss_pred ccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-------CCceeEEEEECC-eEEE-EecCCCcCCCeeEEEe
Q 012294 178 ALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-------SSTVQAIGSSDK-HLFV-SFESGRRNSNSIMVYD 248 (466)
Q Consensus 178 ~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-------r~~~~Ava~l~~-~IYa-Gg~~g~~~l~sVE~YD 248 (466)
.-+++..|.|| .+ |.+..|+..+..=....++ ..+....-.+++ +|.. +| ..++--||
T Consensus 106 sPSg~~VAcGG--Ld-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG------D~TCalWD 172 (343)
T KOG0286|consen 106 SPSGNFVACGG--LD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG------DMTCALWD 172 (343)
T ss_pred CCCCCeEEecC--cC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC------CceEEEEE
Confidence 36788999999 55 4567787665433333333 344443444544 5666 44 35788999
Q ss_pred cCCCCccccccccc-cccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCccccccee
Q 012294 249 INSLKPVNEIGQNE-IYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVT 327 (466)
Q Consensus 249 p~t~~~~~~~~~~~-~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~ 327 (466)
.++ +++. .|.|.. .+.|.+...+.++..|++||-|. +..+||.|++.+|=++.+|.--+-.+.
T Consensus 173 ie~-------g~~~~~f~GH~---gDV~slsl~p~~~ntFvSg~cD~------~aklWD~R~~~c~qtF~ghesDINsv~ 236 (343)
T KOG0286|consen 173 IET-------GQQTQVFHGHT---GDVMSLSLSPSDGNTFVSGGCDK------SAKLWDVRSGQCVQTFEGHESDINSVR 236 (343)
T ss_pred ccc-------ceEEEEecCCc---ccEEEEecCCCCCCeEEeccccc------ceeeeeccCcceeEeecccccccceEE
Confidence 999 5554 353332 35677777778999999999544 789999999999999999972222333
Q ss_pred eecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEE-eCCeEEEeEee
Q 012294 328 VSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-KGGEIELWSEI 402 (466)
Q Consensus 328 v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~~~~~~v~~~~ 402 (466)
.=++|.. |+-|+-++.--+-|||.-- + +.+=+.. ..+. +- ..+-...-|.-||+. .+..+.||--.
T Consensus 237 ffP~G~a-fatGSDD~tcRlyDlRaD~-~---~a~ys~~-~~~~--gi-tSv~FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 237 FFPSGDA-FATGSDDATCRLYDLRADQ-E---LAVYSHD-SIIC--GI-TSVAFSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred EccCCCe-eeecCCCceeEEEeecCCc-E---EeeeccC-cccC--Cc-eeEEEcccccEEEeeecCCceeEeecc
Confidence 4456666 7788899999999999832 1 2221100 1121 11 555566677788884 78899999886
No 52
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.51 E-value=7.9e-05 Score=54.58 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=28.3
Q ss_pred ccccceeeeeeccc-CCcEEEEecccCCCc-eeccceeeeeCCCCceeecCCC
Q 012294 166 ILTHFTAVDSLLAL-SPGVAAAGATDFSGL-QVLDLENGYVKETLNWENVTRS 216 (466)
Q Consensus 166 ~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~-~~l~svE~ydp~t~~W~~va~M 216 (466)
+|..|+++. + ++.||++|| .+.. ..++.+..||+.+++|+.+++|
T Consensus 1 pR~~h~~~~----~~~~~i~v~GG--~~~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVS----IGDNSIYVFGG--RDSSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEE----E-TTEEEEE----EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEE----EeCCeEEEECC--CCCCCcccCCEEEEECCCCEEEECCCC
Confidence 477777665 6 589999999 5443 6899999999999999999776
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.46 E-value=0.039 Score=51.18 Aligned_cols=152 Identities=18% Similarity=0.246 Sum_probs=87.5
Q ss_pred eeeeecccCC-cEEEEecccCCCceeccceeeeeCCCCceee-cCCCCCceeEEEEEC-CeEEE-EecCCCcCCCeeEEE
Q 012294 172 AVDSLLALSP-GVAAAGATDFSGLQVLDLENGYVKETLNWEN-VTRSSSTVQAIGSSD-KHLFV-SFESGRRNSNSIMVY 247 (466)
Q Consensus 172 ~v~sl~~l~~-~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~-va~Mr~~~~Ava~l~-~~IYa-Gg~~g~~~l~sVE~Y 247 (466)
.+.++.+... .+++.|+ .+| .+..||..+.+-.. .........+++... +.+.+ |.. ...+..|
T Consensus 95 ~i~~~~~~~~~~~~~~~~--~~~-----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~ 162 (289)
T cd00200 95 YVSSVAFSPDGRILSSSS--RDK-----TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-----DGTIKLW 162 (289)
T ss_pred cEEEEEEcCCCCEEEEec--CCC-----eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-----CCcEEEE
Confidence 3444444544 5555555 344 34456665332211 111122233345554 34444 432 3578899
Q ss_pred ecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCccccccee
Q 012294 248 DINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVT 327 (466)
Q Consensus 248 Dp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~ 327 (466)
|..+.+++..+.... .....+.|.+-++.|++++. .+.|.+||.++++.+-++..+......+.
T Consensus 163 d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 226 (289)
T cd00200 163 DLRTGKCVATLTGHT---------GEVNSVAFSPDGEKLLSSSS-------DGTIKLWDLSTGKCLGTLRGHENGVNSVA 226 (289)
T ss_pred EccccccceeEecCc---------cccceEEECCCcCEEEEecC-------CCcEEEEECCCCceecchhhcCCceEEEE
Confidence 998755444433211 12334556554445555543 34799999999988877766665667777
Q ss_pred eecCCCceEEEEEeeCceeEeeccc
Q 012294 328 VSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 328 v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
.+++ +.++..+..+|.|.+.|++.
T Consensus 227 ~~~~-~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 227 FSPD-GYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred EcCC-CcEEEEEcCCCcEEEEEcCC
Confidence 8877 55665666799999999886
No 54
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.26 E-value=0.00025 Score=70.88 Aligned_cols=81 Identities=14% Similarity=0.267 Sum_probs=69.0
Q ss_pred CCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC-------C---ce--eEcCCchhHHHHhcccccCccccCCCCcC
Q 012294 21 DSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-------T---HR--FIDRDPELFSILLSLLRTGNLPSKAKAFD 88 (466)
Q Consensus 21 ~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-------~---~~--fiDRDp~~F~~IL~ylrtG~l~~~~~~~~ 88 (466)
..++|++-|.+.+|..++..|+. .|.+++..||.. + +| --+....+|+.||+|+.+|.+.. |+...
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~-~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRC-P~~vS 171 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTS-KPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRC-PSSVS 171 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecC-CcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeC-CCCCc
Confidence 36789999999999999999998 899999999974 2 23 23467789999999999999998 67899
Q ss_pred hHHHHHhhccccchh
Q 012294 89 IEDLIEESKFYNIES 103 (466)
Q Consensus 89 ~~~Ll~EA~f~~l~~ 103 (466)
+.+|.++++|+-|.-
T Consensus 172 vpELrEACDYLlipF 186 (438)
T KOG3840|consen 172 VSELREACDYLLVPF 186 (438)
T ss_pred hHHHHhhcceEEeec
Confidence 999999999887654
No 55
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.26 E-value=0.022 Score=55.05 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=70.6
Q ss_pred eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeC
Q 012294 229 HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDI 307 (466)
Q Consensus 229 ~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDp 307 (466)
.+|+ ++. .+.+.+||+.+.+++..+.. +. .+..+.|.+-+..||++++. .+.|..||.
T Consensus 2 ~~~~s~~~-----d~~v~~~d~~t~~~~~~~~~-----~~-----~~~~l~~~~dg~~l~~~~~~------~~~v~~~d~ 60 (300)
T TIGR03866 2 KAYVSNEK-----DNTISVIDTATLEVTRTFPV-----GQ-----RPRGITLSKDGKLLYVCASD------SDTIQVIDL 60 (300)
T ss_pred cEEEEecC-----CCEEEEEECCCCceEEEEEC-----CC-----CCCceEECCCCCEEEEEECC------CCeEEEEEC
Confidence 4666 433 35889999998554443322 11 12345566556678888763 347999999
Q ss_pred CCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294 308 RSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL 353 (466)
Q Consensus 308 rt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~ 353 (466)
.+++.+.+...+.+. ..+.+++++..+|..+..++.|.+.|++..
T Consensus 61 ~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~ 105 (300)
T TIGR03866 61 ATGEVIGTLPSGPDP-ELFALHPNGKILYIANEDDNLVTVIDIETR 105 (300)
T ss_pred CCCcEEEeccCCCCc-cEEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 999877665444332 456788899999988888899999999873
No 56
>PTZ00421 coronin; Provisional
Probab=97.22 E-value=0.051 Score=59.06 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=92.5
Q ss_pred cceeeeeeccc--CCcEEEEecccCCCceeccceeeeeCCCCce-----eecCCC---CCceeEEEEEC--CeEEE-Eec
Q 012294 169 HFTAVDSLLAL--SPGVAAAGATDFSGLQVLDLENGYVKETLNW-----ENVTRS---SSTVQAIGSSD--KHLFV-SFE 235 (466)
Q Consensus 169 ~~~~v~sl~~l--~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W-----~~va~M---r~~~~Ava~l~--~~IYa-Gg~ 235 (466)
+-+.+.++.+- ++.++|.|+ .++. +-.||..+... ..+..+ ...+..++... +.+.+ |+.
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS--~Dgt-----IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTAS--EDGT-----IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEe--CCCE-----EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 33455555554 467788887 6653 34454433211 111112 23334345442 24555 654
Q ss_pred CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE
Q 012294 236 SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE 315 (466)
Q Consensus 236 ~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~ 315 (466)
..+|-.||.++.+.+..+... .. ....+.|.+ ++.++++|+.| ++|.+||+|+++++.+
T Consensus 147 -----DgtVrIWDl~tg~~~~~l~~h-----~~----~V~sla~sp-dG~lLatgs~D------g~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 147 -----DMVVNVWDVERGKAVEVIKCH-----SD----QITSLEWNL-DGSLLCTTSKD------KKLNIIDPRDGTIVSS 205 (493)
T ss_pred -----CCEEEEEECCCCeEEEEEcCC-----CC----ceEEEEEEC-CCCEEEEecCC------CEEEEEECCCCcEEEE
Confidence 457899999985444333210 10 123456665 56677777744 4799999999999988
Q ss_pred EcCCccc-ccceeeecCCCceEEEEE---eeCceeEeeccccC
Q 012294 316 VKDEVDC-FSDVTVSDNLSAIYKVGI---NSGEVSYMDLRKLG 354 (466)
Q Consensus 316 ~~~~~d~-~~~~~v~~~~~~i~~v~~---~~g~l~~~dlr~~~ 354 (466)
...|... ...+....++..|+.+|. .++.+.+-|+|++.
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 8777432 223344556677776653 47899999999876
No 57
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.13 E-value=0.0034 Score=66.89 Aligned_cols=147 Identities=14% Similarity=0.071 Sum_probs=97.3
Q ss_pred CCCCCCCCCceeeecCCcEEEEcCCc----------eee-----Ee-----------cCC----CCCCCccccceeeeee
Q 012294 127 PLNGRDSPSAIATTNYGTLHVSHGSK----------ITS-----FD-----------WSM----RKKSTILTHFTAVDSL 176 (466)
Q Consensus 127 ~~~~R~~~~a~~a~~~g~lyva~GG~----------ve~-----YD-----------W~~----a~m~~~R~~~~~v~sl 176 (466)
+|.+|-.|+ -....+++| .+||. +-+ |- |.. ...+.+|-.|.++. -
T Consensus 133 pPCPRlGHS--Fsl~gnKcY-lFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAVi-Y 208 (830)
T KOG4152|consen 133 PPCPRLGHS--FSLVGNKCY-LFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVI-Y 208 (830)
T ss_pred CCCCccCce--eEEeccEeE-EeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEE-E
Confidence 346777777 556678999 56763 111 22 764 45677888876664 1
Q ss_pred ccc---CCcEEEEecccCCCceeccceeeeeCCCCceee-----cCCC-CCceeEEEEECCeEEE-EecCC---------
Q 012294 177 LAL---SPGVAAAGATDFSGLQVLDLENGYVKETLNWEN-----VTRS-SSTVQAIGSSDKHLFV-SFESG--------- 237 (466)
Q Consensus 177 ~~l---~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~-----va~M-r~~~~Ava~l~~~IYa-Gg~~g--------- 237 (466)
+.. ..++|+-|| ..|. .|...-..|.++.+|+. ++|| |+.+. .++++|++|+ ||.-.
T Consensus 209 ~eKDs~~skmvvyGG--M~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHs-a~~IGnKMyvfGGWVPl~~~~~~~~ 284 (830)
T KOG4152|consen 209 TEKDSKKSKMVVYGG--MSGC-RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHS-ATTIGNKMYVFGGWVPLVMDDVKVA 284 (830)
T ss_pred EeccCCcceEEEEcc--cccc-cccceeEEecceeecccccccCCCCCCccccc-ceeecceeEEecceeeeeccccccc
Confidence 112 357999999 8875 45666667899999975 4677 88877 6899999999 88421
Q ss_pred -----CcCCCeeEEEecCCCCccccccccccccCCceeecCc------------ceeeEEeeCCeEEEEeecCCCC
Q 012294 238 -----RRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA------------TKLRWVSSYNLLLASGSHSDIS 296 (466)
Q Consensus 238 -----~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~------------~k~~~~~~~~~Lyv~Gg~~g~~ 296 (466)
-.+.++.-|++..| ..|..+-. -..+-+..+.+||.=.|.||-.
T Consensus 285 ~hekEWkCTssl~clNldt---------------~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYr 345 (830)
T KOG4152|consen 285 THEKEWKCTSSLACLNLDT---------------MAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYR 345 (830)
T ss_pred cccceeeeccceeeeeecc---------------hheeeeeeccccccccccccccceeEEeccEEEEEeccchhh
Confidence 12357888888888 33433221 1122335899999999988843
No 58
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.13 E-value=0.08 Score=50.26 Aligned_cols=170 Identities=16% Similarity=0.147 Sum_probs=102.5
Q ss_pred cCCcEEEE-cCCceeeEe-------cCCCCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCC--ce
Q 012294 141 NYGTLHVS-HGSKITSFD-------WSMRKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETL--NW 210 (466)
Q Consensus 141 ~~g~lyva-~GG~ve~YD-------W~~a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~--~W 210 (466)
.++.+|++ ..+.+.+|| |....-...... .+. .++.+|+... .+ .+-++|..+. .|
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~----~~~~v~v~~~--~~------~l~~~d~~tG~~~W 100 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--PVV----DGGRVYVGTS--DG------SLYALDAKTGKVLW 100 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--EEE----ETTEEEEEET--TS------EEEEEETTTSCEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--eee----cccccccccc--ee------eeEecccCCcceee
Confidence 57888876 345677788 887221111121 232 6778877764 22 3455664443 68
Q ss_pred e-ecCC-----CCCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcc---------
Q 012294 211 E-NVTR-----SSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT--------- 275 (466)
Q Consensus 211 ~-~va~-----Mr~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~--------- 275 (466)
+ .... ..... +.++.++.+|++.. ...+-++|++| |+.. |+.-..+
T Consensus 101 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~g~l~~~d~~t-------G~~~------w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSS-SPAVDGDRLYVGTS-----SGKLVALDPKT-------GKLL------WKYPVGEPRGSSPISS 161 (238)
T ss_dssp EEEE-SSCTCSTB--S-EEEEETTEEEEEET-----CSEEEEEETTT-------TEEE------EEEESSTT-SS--EEE
T ss_pred eecccccccccccccc-CceEecCEEEEEec-----cCcEEEEecCC-------CcEE------EEeecCCCCCCcceee
Confidence 7 3322 11222 25666888998554 35788999999 4432 4432211
Q ss_pred ----eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecc
Q 012294 276 ----KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLR 351 (466)
Q Consensus 276 ----k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr 351 (466)
.-..+..++.||++..... .+.+ |.++++.+|+.. ..+ ........+..||... .+|.|+..|++
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~~g~------~~~~-d~~tg~~~w~~~-~~~--~~~~~~~~~~~l~~~~-~~~~l~~~d~~ 230 (238)
T PF13360_consen 162 FSDINGSPVISDGRVYVSSGDGR------VVAV-DLATGEKLWSKP-ISG--IYSLPSVDGGTLYVTS-SDGRLYALDLK 230 (238)
T ss_dssp ETTEEEEEECCTTEEEEECCTSS------EEEE-ETTTTEEEEEEC-SS---ECECEECCCTEEEEEE-TTTEEEEEETT
T ss_pred ecccccceEEECCEEEEEcCCCe------EEEE-ECCCCCEEEEec-CCC--ccCCceeeCCEEEEEe-CCCEEEEEECC
Confidence 1223335679999887321 3666 999999999775 332 2222577888988666 89999999999
Q ss_pred ccC
Q 012294 352 KLG 354 (466)
Q Consensus 352 ~~~ 354 (466)
+-+
T Consensus 231 tG~ 233 (238)
T PF13360_consen 231 TGK 233 (238)
T ss_dssp TTE
T ss_pred CCC
Confidence 844
No 59
>smart00612 Kelch Kelch domain.
Probab=97.09 E-value=0.00081 Score=47.71 Aligned_cols=32 Identities=9% Similarity=0.254 Sum_probs=26.3
Q ss_pred eEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 285 LLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 285 ~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
.||++||+++. .....|++|||++++ |+..++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~--W~~~~~ 32 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNK--WTPLPS 32 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCe--EccCCC
Confidence 48999998763 346689999999999 998654
No 60
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.03 E-value=0.0012 Score=48.45 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=34.3
Q ss_pred CCcEEEEecccCC--CceeccceeeeeCCCCceeecCCC---CCcee
Q 012294 180 SPGVAAAGATDFS--GLQVLDLENGYVKETLNWENVTRS---SSTVQ 221 (466)
Q Consensus 180 ~~~lYaiGG~~~~--g~~~l~svE~ydp~t~~W~~va~M---r~~~~ 221 (466)
+++||+.|| .+ +...++.+-.||+.+++|+.++++ |+.+.
T Consensus 1 g~~~~vfGG--~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~ 45 (49)
T PF13415_consen 1 GNKLYVFGG--YDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHT 45 (49)
T ss_pred CCEEEEECC--cCCCCCCEecCEEEEECCCCEEEECCCCCCCccceE
Confidence 468999999 55 677899999999999999999887 77665
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.01 E-value=0.049 Score=62.28 Aligned_cols=151 Identities=14% Similarity=0.285 Sum_probs=98.4
Q ss_pred ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
..+.|.+..+.+.++|+.|| +|.+||..+++.+.++.+|.+.+..+...+....++..|+.+|.+.+-|++...
T Consensus 536 ~~l~~~~~~~~~las~~~Dg------~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEG------VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred eeEEeccCCCCEEEEEeCCC------eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 34567665666777777544 899999999999999999987888888887666677789999999999998633
Q ss_pred CCCCeEEeccCCccccccccccceeEEE--EECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCcccc
Q 012294 355 DSSEWICLGDGRKMVNGKRKEGFGCKIE--CHANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTD 430 (466)
Q Consensus 355 ~~~~W~~~~~~~~~m~~~~~~~~~~~~~--~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 430 (466)
. +.. ... .. .-+.+. ..+++++++ .++.|.+|.-- .. + ..+ ..+.+
T Consensus 610 ~------~~~----~~~--~~-~v~~v~~~~~~g~~latgs~dg~I~iwD~~----~~----~---~~~--~~~~~---- 659 (793)
T PLN00181 610 S------IGT----IKT--KA-NICCVQFPSESGRSLAFGSADHKVYYYDLR----NP----K---LPL--CTMIG---- 659 (793)
T ss_pred E------EEE----Eec--CC-CeEEEEEeCCCCCEEEEEeCCCeEEEEECC----CC----C---ccc--eEecC----
Confidence 1 221 111 11 111222 223444443 67889999742 11 0 000 11112
Q ss_pred CCCCceEEEeeecceeEEEeeccceEEEeccC
Q 012294 431 MGGSKITNLSFGGNKMFVTRKGQQTVEVWQSS 462 (466)
Q Consensus 431 ~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 462 (466)
..+.|+.+.|--+..+++=.....|-+|+..
T Consensus 660 -h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 660 -HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred -CCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence 3457888888655677777777789999864
No 62
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.93 E-value=0.00035 Score=72.30 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=69.7
Q ss_pred CCCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------C-ce-eEcCCchhHHHHhcccccCccccCCC-----
Q 012294 19 SIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------T-HR-FIDRDPELFSILLSLLRTGNLPSKAK----- 85 (466)
Q Consensus 19 ~~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------~-~~-fiDRDp~~F~~IL~ylrtG~l~~~~~----- 85 (466)
+..-.+|++-|..++|.+||..|+. .++||++|+-+ + .+ +.+-+.++|+.+|.|+|||++.+..-
T Consensus 41 ~e~y~DVtfvve~~rfpAHRvILAa--Rs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~l 118 (620)
T KOG4350|consen 41 SEDYSDVTFVVEDTRFPAHRVILAA--RSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDIL 118 (620)
T ss_pred cCcccceEEEEeccccchhhhhHHH--HHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHH
Confidence 5556899999999999999999998 56799999864 1 23 77888999999999999999876421
Q ss_pred ----------------------------CcChHHHHHhhccccchhhHHhhc
Q 012294 86 ----------------------------AFDIEDLIEESKFYNIESLLINSQ 109 (466)
Q Consensus 86 ----------------------------~~~~~~Ll~EA~f~~l~~l~~~~~ 109 (466)
..|+-++++.|.+|++.+|.+.|+
T Consensus 119 ld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~ 170 (620)
T KOG4350|consen 119 LDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCM 170 (620)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHH
Confidence 123444556777888888887773
No 63
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.87 E-value=0.62 Score=47.03 Aligned_cols=229 Identities=12% Similarity=0.058 Sum_probs=117.8
Q ss_pred ceeeeeCC-CCceeecCCC--CCceeEEEEE-CC-eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC
Q 012294 199 LENGYVKE-TLNWENVTRS--SSTVQAIGSS-DK-HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP 273 (466)
Q Consensus 199 svE~ydp~-t~~W~~va~M--r~~~~Ava~l-~~-~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~ 273 (466)
.+..|+.. ..+++.+... ......++.. ++ .||++.+. .++|-+||.++...+.+.-. . +.+ ...
T Consensus 58 ~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~----~~~v~v~~~~~~g~~~~~~~-~-~~~----~~~ 127 (330)
T PRK11028 58 RVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN----ANCVSVSPLDKDGIPVAPIQ-I-IEG----LEG 127 (330)
T ss_pred cEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC----CCeEEEEEECCCCCCCCcee-e-ccC----CCc
Confidence 34455554 3345433321 1122225555 23 58884331 46788898875211111000 0 000 011
Q ss_pred cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee-----eEE-cCCcccccceeeecCCCceEEEEEeeCceeE
Q 012294 274 ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA-----WEV-KDEVDCFSDVTVSDNLSAIYKVGINSGEVSY 347 (466)
Q Consensus 274 ~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v-----W~~-~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~ 347 (466)
+....+.+-+..|||+.-. .+.|.+||..++..+ ... .+++..--.+++++++..+|++...++.|.+
T Consensus 128 ~~~~~~~p~g~~l~v~~~~------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v 201 (330)
T PRK11028 128 CHSANIDPDNRTLWVPCLK------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDV 201 (330)
T ss_pred ccEeEeCCCCCEEEEeeCC------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEE
Confidence 2233344456788887762 348999999874321 111 1223333467889999999999888999999
Q ss_pred eeccccCCCCCeEEecc---CCcccccccccc-ceeEEEEECCEEEEE-e-CCeEEEeEeeeecCCCCCCCCCcccceee
Q 012294 348 MDLRKLGDSSEWICLGD---GRKMVNGKRKEG-FGCKIECHANQVFCG-K-GGEIELWSEIVMGSRKSREGGPLEERVFR 421 (466)
Q Consensus 348 ~dlr~~~~~~~W~~~~~---~~~~m~~~~~~~-~~~~~~~~~~~lf~~-~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~r 421 (466)
.|+.... +....+.. ....+.. ++- ....++--+.+||++ + .+.|.||.-- .. ++ .-++..
T Consensus 202 ~~~~~~~--~~~~~~~~~~~~p~~~~~--~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~----~~---~~--~~~~~~ 268 (330)
T PRK11028 202 WQLKDPH--GEIECVQTLDMMPADFSD--TRWAADIHITPDGRHLYACDRTASLISVFSVS----ED---GS--VLSFEG 268 (330)
T ss_pred EEEeCCC--CCEEEEEEEecCCCcCCC--CccceeEEECCCCCEEEEecCCCCeEEEEEEe----CC---CC--eEEEeE
Confidence 9997422 12222221 1111111 110 122333445689998 3 4678888642 11 01 111212
Q ss_pred ccccCccccCCCCceEEEeeecceeEEEeeccceEEEecc
Q 012294 422 KNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQS 461 (466)
Q Consensus 422 ~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~ 461 (466)
.-..+. ...--.+.-.|.+|||+-...+.|.||+-
T Consensus 269 ~~~~~~-----~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 269 HQPTET-----QPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEeccc-----cCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 111111 11112455679999999887899999964
No 64
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.83 E-value=0.25 Score=46.79 Aligned_cols=128 Identities=13% Similarity=0.186 Sum_probs=76.2
Q ss_pred CeeEEEecCCCCccccccccccccCCceeecCc--c--ee-eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE
Q 012294 242 NSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA--T--KL-RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV 316 (466)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~--~--k~-~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~ 316 (466)
.+|.++|+.+ |+ ..|+.--. . .. .-+..++.||+..+ .+.+.+||+.+++++|+.
T Consensus 3 g~l~~~d~~t-------G~------~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~ 62 (238)
T PF13360_consen 3 GTLSALDPRT-------GK------ELWSYDLGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRF 62 (238)
T ss_dssp SEEEEEETTT-------TE------EEEEEECSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEE
T ss_pred CEEEEEECCC-------CC------EEEEEECCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEe
Confidence 5788999988 44 34665221 1 11 12237899999843 457999999999999999
Q ss_pred cCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeE-EeccCCccccccccccceeEEEEECCEEEEEe-CC
Q 012294 317 KDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWI-CLGDGRKMVNGKRKEGFGCKIECHANQVFCGK-GG 394 (466)
Q Consensus 317 ~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~-~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~-~~ 394 (466)
.-+...... ....++.||.+. .++.|+..|+++.+ -.|. +.... +.. ........+++++++|+.. ++
T Consensus 63 ~~~~~~~~~--~~~~~~~v~v~~-~~~~l~~~d~~tG~--~~W~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 63 DLPGPISGA--PVVDGGRVYVGT-SDGSLYALDAKTGK--VLWSIYLTSS-PPA----GVRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp ECSSCGGSG--EEEETTEEEEEE-TTSEEEEEETTTSC--EEEEEEE-SS-CTC----STB--SEEEEETTEEEEEETCS
T ss_pred eccccccce--eeeccccccccc-ceeeeEecccCCcc--eeeeeccccc-ccc----ccccccCceEecCEEEEEeccC
Confidence 865322222 355677777444 67789999988744 3565 33221 110 1013445555666676665 55
Q ss_pred eEEEe
Q 012294 395 EIELW 399 (466)
Q Consensus 395 ~~~v~ 399 (466)
.|-.+
T Consensus 133 ~l~~~ 137 (238)
T PF13360_consen 133 KLVAL 137 (238)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 55333
No 65
>PTZ00420 coronin; Provisional
Probab=96.81 E-value=0.13 Score=56.87 Aligned_cols=192 Identities=13% Similarity=0.067 Sum_probs=103.1
Q ss_pred cceeeeeecccC--CcEEEEecccCCCceeccceeeeeCCCCc--e----eecCCC---CCceeEEEEEC--CeEEE-Ee
Q 012294 169 HFTAVDSLLALS--PGVAAAGATDFSGLQVLDLENGYVKETLN--W----ENVTRS---SSTVQAIGSSD--KHLFV-SF 234 (466)
Q Consensus 169 ~~~~v~sl~~l~--~~lYaiGG~~~~g~~~l~svE~ydp~t~~--W----~~va~M---r~~~~Ava~l~--~~IYa-Gg 234 (466)
+-+.+.++.+.. +.++|.|+ .+|. +-.||..+.. - ..+..+ ...+.+++... ..+.+ |+
T Consensus 73 H~~~V~~lafsP~~~~lLASgS--~Dgt-----IrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGS--EDLT-----IRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEe--CCCe-----EEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 334566666653 56888888 6653 3344433210 0 001111 22333344443 24555 55
Q ss_pred cCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeee
Q 012294 235 ESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAW 314 (466)
Q Consensus 235 ~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW 314 (466)
. ..+|-.||..+.+.+..+.+. .....+.|.+ +|.++++++.| +.|.+||+|+++++-
T Consensus 146 ~-----DgtIrIWDl~tg~~~~~i~~~----------~~V~Slswsp-dG~lLat~s~D------~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 146 F-----DSFVNIWDIENEKRAFQINMP----------KKLSSLKWNI-KGNLLSGTCVG------KHMHIIDPRKQEIAS 203 (568)
T ss_pred C-----CCeEEEEECCCCcEEEEEecC----------CcEEEEEECC-CCCEEEEEecC------CEEEEEECCCCcEEE
Confidence 4 357899999984433333220 0134556665 55566777633 479999999999988
Q ss_pred EEcCCcccccce-----eeecCCCceEEEEEeeC----ceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEEC
Q 012294 315 EVKDEVDCFSDV-----TVSDNLSAIYKVGINSG----EVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHA 385 (466)
Q Consensus 315 ~~~~~~d~~~~~-----~v~~~~~~i~~v~~~~g----~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~ 385 (466)
++..|...+... +.+.++..|. .++.++ .+.+-|+|.++. ++.. +.. ....++-+-.|+
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~-----pl~~----~~l--d~~~~~L~p~~D 271 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTS-----ALVT----MSI--DNASAPLIPHYD 271 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCC-----ceEE----EEe--cCCccceEEeee
Confidence 887774322111 1234556655 344443 699999998652 1111 110 111333334443
Q ss_pred ---CEEEEE--eCCeEEEeEe
Q 012294 386 ---NQVFCG--KGGEIELWSE 401 (466)
Q Consensus 386 ---~~lf~~--~~~~~~v~~~ 401 (466)
|++|++ .++.|.+|-=
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEc
Confidence 888876 3666888853
No 66
>PTZ00421 coronin; Provisional
Probab=96.69 E-value=0.31 Score=53.01 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=92.8
Q ss_pred eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
.+.|.+..+.++++|+.|+ +|.+||.++++.+-++..|.+.+..+...+++.. +..|+.+|.|.+-|+|+...
T Consensus 130 ~l~f~P~~~~iLaSgs~Dg------tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l-Latgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 130 IVSFHPSAMNVLASAGADM------VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL-LCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred EEEeCcCCCCEEEEEeCCC------EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE-EEEecCCCEEEEEECCCCcE
Confidence 4567766666777887544 7999999999988888888888888889888765 45788999999999998441
Q ss_pred CCCeEEeccCCccccccccccceeEEEEECCEEEEE-----eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCcccc
Q 012294 356 SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-----KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTD 430 (466)
Q Consensus 356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 430 (466)
-..+.. ... .....+.-...++.++.+ .++.|.+|.-- . +.+.+ ...-.+ .
T Consensus 203 ---v~tl~~---H~~---~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr-----~------~~~p~-~~~~~d---~ 258 (493)
T PTZ00421 203 ---VSSVEA---HAS---AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR-----K------MASPY-STVDLD---Q 258 (493)
T ss_pred ---EEEEec---CCC---CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC-----C------CCCce-eEeccC---C
Confidence 111111 000 000111111123455543 35679999742 1 01111 110001 1
Q ss_pred CCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294 431 MGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS 463 (466)
Q Consensus 431 ~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 463 (466)
...-.+..+...|+.|++.=+....|-+||...
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 111123345667888888776667788887643
No 67
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.61 E-value=0.0023 Score=46.73 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=24.6
Q ss_pred CCceeEEEEE-CCeEEE-EecCCC-cCCCeeEEEecCCCCccccccccccccCCceeecCcc
Q 012294 217 SSTVQAIGSS-DKHLFV-SFESGR-RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT 275 (466)
Q Consensus 217 r~~~~Ava~l-~~~IYa-Gg~~g~-~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~ 275 (466)
|..++ ++.+ ++.||+ ||.+.. ..++.+++||+++ +.|+.+++|
T Consensus 2 R~~h~-~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~---------------~~W~~~~~~ 47 (49)
T PF13418_consen 2 RYGHS-AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIET---------------NTWTRLPSM 47 (49)
T ss_dssp -BS-E-EEEE-TTEEEEE--EEE-TEE---EEEEETTT---------------TEEEE--SS
T ss_pred cceEE-EEEEeCCeEEEECCCCCCCcccCCEEEEECCC---------------CEEEECCCC
Confidence 45565 4555 689999 887554 4599999999999 678887654
No 68
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.56 E-value=0.04 Score=56.81 Aligned_cols=163 Identities=14% Similarity=0.117 Sum_probs=106.4
Q ss_pred cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC----CCceeEEEEECCeEEE-EecCC-----CcCCCeeEEEe
Q 012294 179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS----SSTVQAIGSSDKHLFV-SFESG-----RRNSNSIMVYD 248 (466)
Q Consensus 179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M----r~~~~Ava~l~~~IYa-Gg~~g-----~~~l~sVE~YD 248 (466)
+++.+|+.=| ..|...+ ++--+-....|+.++.- |..+. .++++++||+ ||..- ...++.+.+||
T Consensus 45 ig~~~YVGLG--s~G~afy--~ldL~~~~k~W~~~a~FpG~~rnqa~-~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~ 119 (381)
T COG3055 45 IGDTVYVGLG--SAGTAFY--VLDLKKPGKGWTKIADFPGGARNQAV-AAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYD 119 (381)
T ss_pred ecceEEEEec--cCCccce--ehhhhcCCCCceEcccCCCcccccch-heeeCCeEEEeeccccCCCCCceEeeeeEEec
Confidence 6778998777 4444322 22223345689999976 65555 6899999999 77522 12378999999
Q ss_pred cCCCCccccccccccccCCceeecCcce---e---eEEeeCC-eEEEEeecCCC-----C--------------------
Q 012294 249 INSLKPVNEIGQNEIYGTDIESAIPATK---L---RWVSSYN-LLLASGSHSDI-----S-------------------- 296 (466)
Q Consensus 249 p~t~~~~~~~~~~~~~~~~~w~~~~~~k---~---~~~~~~~-~Lyv~Gg~~g~-----~-------------------- 296 (466)
|.+ |+|...+..+ + ....+++ .||..||.+-. +
T Consensus 120 p~~---------------nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~y 184 (381)
T COG3055 120 PST---------------NSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHY 184 (381)
T ss_pred CCC---------------ChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHH
Confidence 999 7888777332 2 2334556 99999996521 0
Q ss_pred --------cccceEEEEeCCCCeeeeEEcCC--cccccceeeecCCCceEEEEEeeCceeEeeccccCC--------CCC
Q 012294 297 --------KVTGNIKFWDIRSGNVAWEVKDE--VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD--------SSE 358 (466)
Q Consensus 297 --------~~~~sVe~yDprt~~~vW~~~~~--~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~--------~~~ 358 (466)
..+..|=.|||.+++ |..... --.+|+.++.-.++. +-.-+|++. --||+.+. .-+
T Consensus 185 f~~~~~dy~~n~ev~sy~p~~n~--W~~~G~~pf~~~aGsa~~~~~n~---~~lInGEiK-pGLRt~~~k~~~~~~~~~~ 258 (381)
T COG3055 185 FDKKAEDYFFNKEVLSYDPSTNQ--WRNLGENPFYGNAGSAVVIKGNK---LTLINGEIK-PGLRTAEVKQADFGGDNLK 258 (381)
T ss_pred hCCCHHHhcccccccccccccch--hhhcCcCcccCccCcceeecCCe---EEEEcceec-CCccccceeEEEeccCcee
Confidence 013347789999999 998763 445677777777776 444556643 34677763 456
Q ss_pred eEEeccCCc
Q 012294 359 WICLGDGRK 367 (466)
Q Consensus 359 W~~~~~~~~ 367 (466)
|..+++-..
T Consensus 259 w~~l~~lp~ 267 (381)
T COG3055 259 WLKLSDLPA 267 (381)
T ss_pred eeeccCCCC
Confidence 888876443
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.35 E-value=0.049 Score=57.71 Aligned_cols=135 Identities=21% Similarity=0.349 Sum_probs=84.1
Q ss_pred cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC--CCceeEEEEECC-eEEE--EecCCCcCCCeeEEEecCCCC
Q 012294 179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS--SSTVQAIGSSDK-HLFV--SFESGRRNSNSIMVYDINSLK 253 (466)
Q Consensus 179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M--r~~~~Ava~l~~-~IYa--Gg~~g~~~l~sVE~YDp~t~~ 253 (466)
.++.|.+-|| |||. +-.||..+.+ +.+..+ -.-+.-|..+.+ .++| | -++|-+||..+
T Consensus 164 ~~~hivvtGs--YDg~-----vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAg-------Gn~vkVWDl~~-- 226 (487)
T KOG0310|consen 164 ANDHIVVTGS--YDGK-----VRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAG-------GNSVKVWDLTT-- 226 (487)
T ss_pred CCCeEEEecC--CCce-----EEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcC-------CCeEEEEEecC--
Confidence 6788999999 9984 6678877773 223333 122222444544 6666 4 35899999998
Q ss_pred cccccccccccc-CCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee--eEEcCCcccccceeeec
Q 012294 254 PVNEIGQNEIYG-TDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA--WEVKDEVDCFSDVTVSD 330 (466)
Q Consensus 254 ~~~~~~~~~~~~-~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v--W~~~~~~d~~~~~~v~~ 330 (466)
|.|.... .+--+ ..+.+....-+-+|+..| ..+.|..||.-+=++| |.+.+|. .++++++
T Consensus 227 -----G~qll~~~~~H~K--tVTcL~l~s~~~rLlS~s-------LD~~VKVfd~t~~Kvv~s~~~~~pv---Lsiavs~ 289 (487)
T KOG0310|consen 227 -----GGQLLTSMFNHNK--TVTCLRLASDSTRLLSGS-------LDRHVKVFDTTNYKVVHSWKYPGPV---LSIAVSP 289 (487)
T ss_pred -----Cceehhhhhcccc--eEEEEEeecCCceEeecc-------cccceEEEEccceEEEEeeecccce---eeEEecC
Confidence 4444210 00011 223333333344555444 3568999995555777 7776666 9999999
Q ss_pred CCCceEEEEEeeCceeEe
Q 012294 331 NLSAIYKVGINSGEVSYM 348 (466)
Q Consensus 331 ~~~~i~~v~~~~g~l~~~ 348 (466)
++..++ +|--||-|..-
T Consensus 290 dd~t~v-iGmsnGlv~~r 306 (487)
T KOG0310|consen 290 DDQTVV-IGMSNGLVSIR 306 (487)
T ss_pred CCceEE-Eecccceeeee
Confidence 999976 78888886443
No 70
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.27 E-value=0.16 Score=54.39 Aligned_cols=182 Identities=18% Similarity=0.311 Sum_probs=113.9
Q ss_pred CCeeEEEecCCC-Cc-cccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC
Q 012294 241 SNSIMVYDINSL-KP-VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD 318 (466)
Q Consensus 241 l~sVE~YDp~t~-~~-~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~ 318 (466)
..++-.||.+.. .. ....||.. ....+.+.+.+ .++++|+.|+ +|++||.++++++-.+.+
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~~----------~v~~~~f~p~g-~~i~Sgs~D~------tvriWd~~~~~~~~~l~~ 286 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHST----------YVTSVAFSPDG-NLLVSGSDDG------TVRIWDVRTGECVRKLKG 286 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCCC----------ceEEEEecCCC-CEEEEecCCC------cEEEEeccCCeEEEeeec
Confidence 567889999441 11 12223311 12344555555 7888888544 899999999999999999
Q ss_pred CcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccc---ceeEEEEECCEEEEEeCC-
Q 012294 319 EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG---FGCKIECHANQVFCGKGG- 394 (466)
Q Consensus 319 ~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~---~~~~~~~~~~~lf~~~~~- 394 (466)
|.+....++..++++.|... .++|.|.+=|+.+.... ++.. +.. .... +.+.-+=.+..|+++-.|
T Consensus 287 hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~----~~~~----~~~-~~~~~~~~~~~fsp~~~~ll~~~~d~ 356 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKL----CLKL----LSG-AENSAPVTSVQFSPNGKYLLSASLDR 356 (456)
T ss_pred cCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCcee----eeec----ccC-CCCCCceeEEEECCCCcEEEEecCCC
Confidence 99899999999999987644 77999999998885510 2222 111 0000 122222234555555555
Q ss_pred eEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCCC
Q 012294 395 EIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSR 464 (466)
Q Consensus 395 ~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~~ 464 (466)
.|-+|.= ......+.+.++..+. .....-+.+.+.+.+++=.+...|.+|..+..
T Consensus 357 ~~~~w~l--------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 357 TLKLWDL--------------RSGKSVGTYTGHSNLV-RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred eEEEEEc--------------cCCcceeeecccCCcc-eeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 6766643 2222344455553331 12223334779999999999999999998754
No 71
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.25 E-value=0.011 Score=60.79 Aligned_cols=84 Identities=20% Similarity=0.405 Sum_probs=71.7
Q ss_pred eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeC
Q 012294 229 HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDI 307 (466)
Q Consensus 229 ~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDp 307 (466)
.|.| |+-+ ..|-.||..+++++..+-++. +.+++.|+. ...||++.- .+.|+.||.
T Consensus 299 pL~A~G~vd-----G~i~iyD~a~~~~R~~c~he~----------~V~~l~w~~-t~~l~t~c~-------~g~v~~wDa 355 (399)
T KOG0296|consen 299 PLAACGSVD-----GTIAIYDLAASTLRHICEHED----------GVTKLKWLN-TDYLLTACA-------NGKVRQWDA 355 (399)
T ss_pred chhhccccc-----ceEEEEecccchhheeccCCC----------ceEEEEEcC-cchheeecc-------CceEEeeec
Confidence 3666 5543 467899999999999999866 578999998 788888775 678999999
Q ss_pred CCCeeeeEEcCCcccccceeeecCCCce
Q 012294 308 RSGNVAWEVKDEVDCFSDVTVSDNLSAI 335 (466)
Q Consensus 308 rt~~~vW~~~~~~d~~~~~~v~~~~~~i 335 (466)
||++.+-+..+|.+.+.+|++.++.+.|
T Consensus 356 RtG~l~~~y~GH~~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 356 RTGQLKFTYTGHQMGILDFALSPQKRLV 383 (399)
T ss_pred cccceEEEEecCchheeEEEEcCCCcEE
Confidence 9999999999999999999999988883
No 72
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.19 E-value=1.1 Score=43.42 Aligned_cols=213 Identities=17% Similarity=0.172 Sum_probs=117.1
Q ss_pred CCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCCCCcccc
Q 012294 180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPVNE 257 (466)
Q Consensus 180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~ 257 (466)
++.||.+-- ..+ .+-++|+.+.+-....-. ...+ +++. ++.+|++.. ..+-.+|+.+
T Consensus 11 ~g~l~~~D~--~~~-----~i~~~~~~~~~~~~~~~~-~~~G-~~~~~~~g~l~v~~~------~~~~~~d~~~------ 69 (246)
T PF08450_consen 11 DGRLYWVDI--PGG-----RIYRVDPDTGEVEVIDLP-GPNG-MAFDRPDGRLYVADS------GGIAVVDPDT------ 69 (246)
T ss_dssp TTEEEEEET--TTT-----EEEEEETTTTEEEEEESS-SEEE-EEEECTTSEEEEEET------TCEEEEETTT------
T ss_pred CCEEEEEEc--CCC-----EEEEEECCCCeEEEEecC-CCce-EEEEccCCEEEEEEc------CceEEEecCC------
Confidence 567777754 322 355677777764433222 2233 5555 688998432 2345669888
Q ss_pred ccccccccCCceee--cC-cce---eeEEeeCCeEEEEeecCCCCccc--ceEEEEeCCCCeeeeEEcCCcccccceeee
Q 012294 258 IGQNEIYGTDIESA--IP-ATK---LRWVSSYNLLLASGSHSDISKVT--GNIKFWDIRSGNVAWEVKDEVDCFSDVTVS 329 (466)
Q Consensus 258 ~~~~~~~~~~~w~~--~~-~~k---~~~~~~~~~Lyv~Gg~~g~~~~~--~sVe~yDprt~~~vW~~~~~~d~~~~~~v~ 329 (466)
++.+.+ ... .. +.. -..+.-+|.||+..-........ +.|-++|+. +++..-. +....--.++++
T Consensus 70 -g~~~~~----~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s 142 (246)
T PF08450_consen 70 -GKVTVL----ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFS 142 (246)
T ss_dssp -TEEEEE----EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEE
T ss_pred -CcEEEE----eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEEC
Confidence 322211 000 00 111 11333578899977644433223 679999999 5522211 112222467899
Q ss_pred cCCCceEEEEEeeCceeEeeccccCC----CCCeEEeccCCccccccccccceeEEEEE-CCEEEEE--eCCeEEEeEee
Q 012294 330 DNLSAIYKVGINSGEVSYMDLRKLGD----SSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCG--KGGEIELWSEI 402 (466)
Q Consensus 330 ~~~~~i~~v~~~~g~l~~~dlr~~~~----~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~--~~~~~~v~~~~ 402 (466)
+++..||..-...+.|+..|+..-+. ...+..+.. ..+.--.+++- .|.||++ .++.|.+++.-
T Consensus 143 ~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 143 PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG---------GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS---------SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred CcchheeecccccceeEEEeccccccceeeeeeEEEcCC---------CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 99999999888999999999975332 111222222 00112234443 5899999 78888888641
Q ss_pred eecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeec---ceeEEE
Q 012294 403 VMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGG---NKMFVT 449 (466)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg---~r~f~~ 449 (466)
. + +-..+ + -. ...+++++||| ++||||
T Consensus 214 -----G----~-~~~~i-~--------~p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 214 -----G----K-LLREI-E--------LP-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp -----S----C-EEEEE-E---------S-SSSEEEEEEESTTSSEEEEE
T ss_pred -----c----c-EEEEE-c--------CC-CCCEEEEEEECCCCCEEEEE
Confidence 1 1 11111 1 12 33799999986 559998
No 73
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.16 E-value=0.088 Score=57.73 Aligned_cols=192 Identities=18% Similarity=0.218 Sum_probs=114.6
Q ss_pred eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEE---------eeCCeEEEEeecCCCCcc
Q 012294 229 HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWV---------SSYNLLLASGSHSDISKV 298 (466)
Q Consensus 229 ~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~---------~~~~~Lyv~Gg~~g~~~~ 298 (466)
.|+| ||. .+.+-.|||.| ..+ .||++-+ .-+|.=..+|+.
T Consensus 184 t~ivsGgt-----ek~lr~wDprt-------~~k------------imkLrGHTdNVr~ll~~dDGt~~ls~sS------ 233 (735)
T KOG0308|consen 184 TIIVSGGT-----EKDLRLWDPRT-------CKK------------IMKLRGHTDNVRVLLVNDDGTRLLSASS------ 233 (735)
T ss_pred eEEEecCc-----ccceEEecccc-------ccc------------eeeeeccccceEEEEEcCCCCeEeecCC------
Confidence 4777 443 68899999999 321 3555432 123333344443
Q ss_pred cceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccce
Q 012294 299 TGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFG 378 (466)
Q Consensus 299 ~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~ 378 (466)
.++|++||...-+|+=+..-|.+..=...++++-..+| -|+.+|.++..|||+-... +.+.....+ - .-
T Consensus 234 DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY-sG~rd~~i~~Tdl~n~~~~---tlick~daP------v-~~ 302 (735)
T KOG0308|consen 234 DGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY-SGGRDGNIYRTDLRNPAKS---TLICKEDAP------V-LK 302 (735)
T ss_pred CceEEeeeccccceeeeEEeccCceEEEeeCCCcceEE-ecCCCCcEEecccCCchhh---eEeecCCCc------h-hh
Confidence 45899999999988877777765555566778888888 7889999999999994211 334331111 1 22
Q ss_pred eEEEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCc--cccC---CCCceEEEeeecceeEEEeec
Q 012294 379 CKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGR--VTDM---GGSKITNLSFGGNKMFVTRKG 452 (466)
Q Consensus 379 ~~~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~---~~~~i~~~~~gg~r~f~~~~~ 452 (466)
..+..+.++++++ ++++|+=|.......-..-+...+..+--+-+.... -+|+ +|..|++-+.=+||=-|+-+|
T Consensus 303 l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkD 382 (735)
T KOG0308|consen 303 LHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKD 382 (735)
T ss_pred hhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeec
Confidence 2334457888877 888999998764421110000011111112222221 1222 455899988888877666555
Q ss_pred -cceEEEecc
Q 012294 453 -QQTVEVWQS 461 (466)
Q Consensus 453 -~~~~~vw~~ 461 (466)
...+-+|+-
T Consensus 383 a~gnv~lwDI 392 (735)
T KOG0308|consen 383 AKGNVALWDI 392 (735)
T ss_pred CCCCEEEEEe
Confidence 455788863
No 74
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.16 Score=52.85 Aligned_cols=131 Identities=23% Similarity=0.347 Sum_probs=86.0
Q ss_pred eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceee--cCcceee-----EE------ee-CCeEEEEeecC
Q 012294 229 HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESA--IPATKLR-----WV------SS-YNLLLASGSHS 293 (466)
Q Consensus 229 ~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~--~~~~k~~-----~~------~~-~~~Lyv~Gg~~ 293 (466)
.|.| ||. ++.+-++.||.++ ++|. |++ ++...|+ |. +- .+.-||.+-
T Consensus 162 ~Iva~GGk---e~~n~lkiwdle~-------~~qi------w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-- 223 (412)
T KOG3881|consen 162 YIVATGGK---ENINELKIWDLEQ-------SKQI------WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-- 223 (412)
T ss_pred ceEecCch---hcccceeeeeccc-------ceee------eeccCCCCccccceeeeeeccceecCCCCCceEEEEe--
Confidence 4888 875 3368899999999 5332 443 2333222 33 21 133344333
Q ss_pred CCCcccceEEEEeCCCC-eeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccc
Q 012294 294 DISKVTGNIKFWDIRSG-NVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGK 372 (466)
Q Consensus 294 g~~~~~~sVe~yDprt~-~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~ 372 (466)
-.+.|++||++.. ++|-++-=-..+.+.++..+++..|| ++-..|+|+..|+|+.- -++.+-+..+
T Consensus 224 ----~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy-~gn~~g~l~~FD~r~~k------l~g~~~kg~t-- 290 (412)
T KOG3881|consen 224 ----RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY-TGNTKGQLAKFDLRGGK------LLGCGLKGIT-- 290 (412)
T ss_pred ----cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE-EecccchhheecccCce------eeccccCCcc--
Confidence 2447999999988 56655533355678888999999999 78899999999999844 1333233333
Q ss_pred ccccceeEEEEECC-EEEEEeC
Q 012294 373 RKEGFGCKIECHAN-QVFCGKG 393 (466)
Q Consensus 373 ~~~~~~~~~~~~~~-~lf~~~~ 393 (466)
|+-..|+||.+ +|.++-|
T Consensus 291 ---Gsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 291 ---GSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred ---CCcceEEEcCCCceEEeec
Confidence 36668999998 6776654
No 75
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=0.17 Score=58.34 Aligned_cols=187 Identities=16% Similarity=0.225 Sum_probs=110.2
Q ss_pred CCcEEEEcCC-ceeeEecCC-CCCCCc---cccceeeeeecccCC---cEEEEecccCCCceeccceeeeeCCCC-----
Q 012294 142 YGTLHVSHGS-KITSFDWSM-RKKSTI---LTHFTAVDSLLALSP---GVAAAGATDFSGLQVLDLENGYVKETL----- 208 (466)
Q Consensus 142 ~g~lyva~GG-~ve~YDW~~-a~m~~~---R~~~~~v~sl~~l~~---~lYaiGG~~~~g~~~l~svE~ydp~t~----- 208 (466)
...+++|-+- .+..|||.. ...+.. -.....|+++..+|+ .+..++. .+|. +..|++..+
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas--~dGv-----IRIwk~y~~~~~~~ 1148 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS--SDGV-----IRIWKDYADKWKKP 1148 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec--cCce-----EEEecccccccCCc
Confidence 4566655332 356788876 332211 112234445555554 5667766 6664 334433333
Q ss_pred ----ceeecCCC---CCceeEEEEE---CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceee
Q 012294 209 ----NWENVTRS---SSTVQAIGSS---DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR 278 (466)
Q Consensus 209 ----~W~~va~M---r~~~~Ava~l---~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~ 278 (466)
.|+.+..| -+..++++.- .|+||++|+ ..+|-+||.++-+.++.|.-.. + + -++.+.
T Consensus 1149 eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-----~r~IRIWDa~~E~~~~diP~~s----~--t--~vTaLS 1215 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-----VRSIRIWDAHKEQVVADIPYGS----S--T--LVTALS 1215 (1387)
T ss_pred eeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-----eeEEEEEecccceeEeecccCC----C--c--cceeec
Confidence 47777777 2333335443 468999655 4689999999955555555422 1 1 122333
Q ss_pred EEeeCCeEEEEeecCCCCcccceEEEEeCCCCe---eeeEEcCCccc--ccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294 279 WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN---VAWEVKDEVDC--FSDVTVSDNLSAIYKVGINSGEVSYMDLRKL 353 (466)
Q Consensus 279 ~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~---~vW~~~~~~d~--~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~ 353 (466)
.-..+|-++|+|=-|| +|++||-|... .|=.+++|.|. +..+.+-+.|-.=-+-|+++|++++.|||+-
T Consensus 1216 ~~~~~gn~i~AGfaDG------svRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADG------SVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ccccCCceEEEeecCC------ceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 2234567777776444 79999987753 46666667655 6666666655542235669999999999995
Q ss_pred C
Q 012294 354 G 354 (466)
Q Consensus 354 ~ 354 (466)
.
T Consensus 1290 ~ 1290 (1387)
T KOG1517|consen 1290 S 1290 (1387)
T ss_pred c
Confidence 4
No 76
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.81 E-value=0.39 Score=51.95 Aligned_cols=148 Identities=13% Similarity=0.200 Sum_probs=85.7
Q ss_pred cCCcEEEEecccCCCceeccceeeeeCCC--CceeecCCC---C----CceeEEEEEC-CeEEEEecCCCcCCCeeEEEe
Q 012294 179 LSPGVAAAGATDFSGLQVLDLENGYVKET--LNWENVTRS---S----STVQAIGSSD-KHLFVSFESGRRNSNSIMVYD 248 (466)
Q Consensus 179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t--~~W~~va~M---r----~~~~Ava~l~-~~IYaGg~~g~~~l~sVE~YD 248 (466)
.++.+|+... .. .+.++|+.+ ..|+.-... + ....++++.+ +.||+|.. ...|-++|
T Consensus 60 ~~g~vy~~~~--~g------~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-----~g~v~AlD 126 (488)
T cd00216 60 VDGDMYFTTS--HS------ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-----DGRLVALD 126 (488)
T ss_pred ECCEEEEeCC--CC------cEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-----CCeEEEEE
Confidence 7888888765 32 344555553 357643221 0 0111245566 89999543 35788999
Q ss_pred cCCCCccccccccccccCCceeecCcce--------eeEEeeCCeEEEEeecCCCC---cccceEEEEeCCCCeeeeEEc
Q 012294 249 INSLKPVNEIGQNEIYGTDIESAIPATK--------LRWVSSYNLLLASGSHSDIS---KVTGNIKFWDIRSGNVAWEVK 317 (466)
Q Consensus 249 p~t~~~~~~~~~~~~~~~~~w~~~~~~k--------~~~~~~~~~Lyv~Gg~~g~~---~~~~sVe~yDprt~~~vW~~~ 317 (466)
++| |+. .|+.-.... -.-...++++|+.. .++.. +..+.+-++|..|++.+|...
T Consensus 127 ~~T-------G~~------~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~-~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 127 AET-------GKQ------VWKFGNNDQVPPGYTMTGAPTIVKKLVIIGS-SGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CCC-------CCE------eeeecCCCCcCcceEecCCCEEECCEEEEec-cccccccCCCCcEEEEEECCCCceeeEee
Confidence 999 553 365433221 11123567777643 22211 245689999999999999874
Q ss_pred CC-cc--------------------cccceeeecCCCceEEEEEee------------------CceeEeeccccC
Q 012294 318 DE-VD--------------------CFSDVTVSDNLSAIYKVGINS------------------GEVSYMDLRKLG 354 (466)
Q Consensus 318 ~~-~d--------------------~~~~~~v~~~~~~i~~v~~~~------------------g~l~~~dlr~~~ 354 (466)
-. .+ .-+...+++.+..|| |+..+ +.|+.+|+.+-+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~-vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 193 TTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVY-VGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred ccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEE-EECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 31 10 012345566777888 44433 379999998755
No 77
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=95.80 E-value=0.45 Score=49.23 Aligned_cols=210 Identities=19% Similarity=0.289 Sum_probs=128.2
Q ss_pred eeeeeCCCCceeecCC-CCCceeEEEEECCeEEE--EecCCCcCCCeeEEEecCCCCccccc-cccccccCCceeecCcc
Q 012294 200 ENGYVKETLNWENVTR-SSSTVQAIGSSDKHLFV--SFESGRRNSNSIMVYDINSLKPVNEI-GQNEIYGTDIESAIPAT 275 (466)
Q Consensus 200 vE~ydp~t~~W~~va~-Mr~~~~Ava~l~~~IYa--Gg~~g~~~l~sVE~YDp~t~~~~~~~-~~~~~~~~~~w~~~~~~ 275 (466)
...+|..+.+=..--+ .-..+-++++.+-+=|. .|+ .+.|-|||.+.++.+.+- ||-. +..
T Consensus 175 ikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge-----dk~VKCwDLe~nkvIR~YhGHlS----------~V~ 239 (460)
T KOG0285|consen 175 IKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE-----DKQVKCWDLEYNKVIRHYHGHLS----------GVY 239 (460)
T ss_pred eEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC-----CCeeEEEechhhhhHHHhccccc----------eeE
Confidence 4445555554221111 13344457888877666 444 467999999995544332 2211 122
Q ss_pred eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
.+..++..++| +.|| ..+++++||.||...|=.+.+|....+++-..+-+..|| -|++++++-+=|||-...
T Consensus 240 ~L~lhPTldvl-~t~g------rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi-t~S~D~tvrlWDl~agkt 311 (460)
T KOG0285|consen 240 CLDLHPTLDVL-VTGG------RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI-TGSHDSTVRLWDLRAGKT 311 (460)
T ss_pred EEeccccceeE-EecC------CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE-EecCCceEEEeeeccCce
Confidence 23333444444 4444 356899999999999999999977778887777777766 688999999999998442
Q ss_pred CCCeEEeccCCccccccccccceeEEEEE-CCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCC
Q 012294 356 SSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGG 433 (466)
Q Consensus 356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 433 (466)
.+.- .+. +. +--.++.| .-.+|+| --|+++-|. +.++.|=.|+-|+ .
T Consensus 312 -----~~tl----t~h--kk-svral~lhP~e~~fASas~dnik~w~--------------~p~g~f~~nlsgh-----~ 360 (460)
T KOG0285|consen 312 -----MITL----THH--KK-SVRALCLHPKENLFASASPDNIKQWK--------------LPEGEFLQNLSGH-----N 360 (460)
T ss_pred -----eEee----ecc--cc-eeeEEecCCchhhhhccCCccceecc--------------CCccchhhccccc-----c
Confidence 1111 111 11 00011111 1257777 445665554 4455555554444 6
Q ss_pred CceEEEeeecceeEEEeeccceEEEeccCC
Q 012294 434 SKITNLSFGGNKMFVTRKGQQTVEVWQSSS 463 (466)
Q Consensus 434 ~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 463 (466)
+-|-.+++--|-..++=.|.-++--|+.-.
T Consensus 361 ~iintl~~nsD~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 361 AIINTLSVNSDGVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred ceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence 678889988888888888888888887543
No 78
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.75 E-value=0.29 Score=51.83 Aligned_cols=122 Identities=22% Similarity=0.336 Sum_probs=85.2
Q ss_pred eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEE
Q 012294 282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWIC 361 (466)
Q Consensus 282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~ 361 (466)
.+.+||-++- ..+|.+||.-.+.+.-+..-|. ....+++|+....+| ||...|.+|..+|-.+.+
T Consensus 187 ~~~rl~TaS~-------D~t~k~wdlS~g~LLlti~fp~-si~av~lDpae~~~y-iGt~~G~I~~~~~~~~~~------ 251 (476)
T KOG0646|consen 187 TNARLYTASE-------DRTIKLWDLSLGVLLLTITFPS-SIKAVALDPAERVVY-IGTEEGKIFQNLLFKLSG------ 251 (476)
T ss_pred ccceEEEecC-------CceEEEEEeccceeeEEEecCC-cceeEEEcccccEEE-ecCCcceEEeeehhcCCc------
Confidence 3556776664 5689999999999888877664 456788999999999 899999999988877653
Q ss_pred eccCCccccccccccceeEEEEECCEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee
Q 012294 362 LGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF 441 (466)
Q Consensus 362 ~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~ 441 (466)
-+ +.. . .|+ .-.+..-+++++|+ +.+..|+-+++
T Consensus 252 -~~----~~v--------~----------~k~--------------------~~~~~t~~~~~~Gh---~~~~~ITcLai 285 (476)
T KOG0646|consen 252 -QS----AGV--------N----------QKG--------------------RHEENTQINVLVGH---ENESAITCLAI 285 (476)
T ss_pred -cc----ccc--------c----------ccc--------------------cccccceeeeeccc---cCCcceeEEEE
Confidence 01 111 0 011 01222247778887 45568998877
Q ss_pred ecc-eeEEEeeccceEEEeccCCC
Q 012294 442 GGN-KMFVTRKGQQTVEVWQSSSR 464 (466)
Q Consensus 442 gg~-r~f~~~~~~~~~~vw~~~~~ 464 (466)
-=| -|-++=.+...|-|||..+.
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchH
Confidence 544 46677788888999998764
No 79
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.70 E-value=0.11 Score=55.68 Aligned_cols=202 Identities=16% Similarity=0.127 Sum_probs=110.8
Q ss_pred CCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC------CCceeEEEEECCeEEE-Ee
Q 012294 162 KKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS------SSTVQAIGSSDKHLFV-SF 234 (466)
Q Consensus 162 ~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M------r~~~~Ava~l~~~IYa-Gg 234 (466)
+.+.+|..|-+++ +...|.+.|| -+ ....+....|+..+|+|.-.+-- .+.++ .+..+.+||+ ||
T Consensus 28 PvPrpRHGHRAVa----ikELiviFGG--GN-EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~G-fvcdGtrilvFGG 99 (830)
T KOG4152|consen 28 PVPRPRHGHRAVA----IKELIVIFGG--GN-EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFG-FVCDGTRILVFGG 99 (830)
T ss_pred CCCCccccchhee----eeeeEEEecC--Cc-ccchhhhhhhccccceeecchhcCCCCCchhhcc-eEecCceEEEEcc
Confidence 4556778887777 9999999998 22 23467788999999999854421 23334 4556668999 77
Q ss_pred cCCCcCCCeeEEEecCCCCccccccccccccCCceeecC------------cceeeEEeeCCeEEEEeecCCCC------
Q 012294 235 ESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP------------ATKLRWVSSYNLLLASGSHSDIS------ 296 (466)
Q Consensus 235 ~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~------------~~k~~~~~~~~~Lyv~Gg~~g~~------ 296 (466)
--... -.+=+-|.... .+|+ |+.+. -........+|+-|+-||-..-.
T Consensus 100 MvEYG-kYsNdLYELQa-------sRWe------Wkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknN 165 (830)
T KOG4152|consen 100 MVEYG-KYSNDLYELQA-------SRWE------WKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNN 165 (830)
T ss_pred Eeeec-cccchHHHhhh-------hhhh------HhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccc
Confidence 31111 22334555554 3333 44332 22334556889999999943221
Q ss_pred --cccceEEEEeCC--CCeeeeEEcCC-----cccccceee--ec---CCCceEEEEEee----CceeEeeccccCCCCC
Q 012294 297 --KVTGNIKFWDIR--SGNVAWEVKDE-----VDCFSDVTV--SD---NLSAIYKVGINS----GEVSYMDLRKLGDSSE 358 (466)
Q Consensus 297 --~~~~sVe~yDpr--t~~~vW~~~~~-----~d~~~~~~v--~~---~~~~i~~v~~~~----g~l~~~dlr~~~~~~~ 358 (466)
.|++.....+.+ ++-+.|+.--- --+-+.-+| .+ .-+.+|+-|+.+ |+|...||..+-
T Consensus 166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~---- 241 (830)
T KOG4152|consen 166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLT---- 241 (830)
T ss_pred cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceee----
Confidence 245544444444 55666886311 111111111 12 235566666644 578888887764
Q ss_pred eEEeccCCccccccccccceeEEEEECCEEEEEeC
Q 012294 359 WICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG 393 (466)
Q Consensus 359 W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~ 393 (466)
|...+-. ...- .+| +=+.....+|..|+..|
T Consensus 242 W~kp~~~--G~~P-lPR-SLHsa~~IGnKMyvfGG 272 (830)
T KOG4152|consen 242 WNKPSLS--GVAP-LPR-SLHSATTIGNKMYVFGG 272 (830)
T ss_pred ccccccc--CCCC-CCc-ccccceeecceeEEecc
Confidence 4332211 1111 244 44555555666665544
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.67 E-value=0.11 Score=55.09 Aligned_cols=154 Identities=19% Similarity=0.311 Sum_probs=103.9
Q ss_pred CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCccee-eEEeeCCeEEEEeecC
Q 012294 217 SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL-RWVSSYNLLLASGSHS 293 (466)
Q Consensus 217 r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~-~~~~~~~~Lyv~Gg~~ 293 (466)
+..+.++.+- ||+|.| |... .-|-+||..+-.++..|.. .+ +|.+. ...+-+|.+++.|+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~a------h~----apv~~~~f~~~d~t~l~s~s-- 130 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDES-----GHVKVFDMKSRVILRQLYA------HQ----APVHVTKFSPQDNTMLVSGS-- 130 (487)
T ss_pred ccceeEEEeecCCeEEEccCCc-----CcEEEeccccHHHHHHHhh------cc----CceeEEEecccCCeEEEecC--
Confidence 3344434543 688999 6653 4588999444111122211 11 34443 35567889999988
Q ss_pred CCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccc
Q 012294 294 DISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKR 373 (466)
Q Consensus 294 g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~ 373 (466)
+...+..||..+..++-+..+|.|-.=-.++.+-+..|+.=|++||.+-.-|+|+.. +|+ -+ .|.-.
T Consensus 131 ----Dd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v--~e----lnhg~ 197 (487)
T KOG0310|consen 131 ----DDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---SRV--VE----LNHGC 197 (487)
T ss_pred ----CCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---cee--EE----ecCCC
Confidence 344799999999998889999977776677888999999999999999999999964 343 23 33201
Q ss_pred cccceeEEEEECCEEEEE-eCCeEEEeEee
Q 012294 374 KEGFGCKIECHANQVFCG-KGGEIELWSEI 402 (466)
Q Consensus 374 ~~~~~~~~~~~~~~lf~~-~~~~~~v~~~~ 402 (466)
| --..++.-.|+++++ -|.+|.||-=.
T Consensus 198 p--Ve~vl~lpsgs~iasAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 198 P--VESVLALPSGSLIASAGGNSVKVWDLT 225 (487)
T ss_pred c--eeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence 1 234556666678877 66689999765
No 81
>PTZ00420 coronin; Provisional
Probab=95.59 E-value=1.2 Score=49.45 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=56.0
Q ss_pred ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
..+.|.+....++++|+.|+ +|.+||.++++.+.+.. +.+.+..+..+.++..| ..+..++.|.+.|+|+..
T Consensus 129 ~sVaf~P~g~~iLaSgS~Dg------tIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL-at~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDS------FVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL-SGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred EEEEECCCCCeEEEEEeCCC------eEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE-EEEecCCEEEEEECCCCc
Confidence 45678877777888888554 79999999999888774 44566778888887754 566689999999999854
No 82
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=95.43 E-value=0.038 Score=57.61 Aligned_cols=148 Identities=16% Similarity=0.255 Sum_probs=98.9
Q ss_pred eecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC--CCc---eeEEE-EECCeEEEEecCCCcCCCeeEEEe
Q 012294 175 SLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS--SST---VQAIG-SSDKHLFVSFESGRRNSNSIMVYD 248 (466)
Q Consensus 175 sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M--r~~---~~Ava-~l~~~IYaGg~~g~~~l~sVE~YD 248 (466)
.+-+.++..++|.| ..|- .+..++|..|. ..| +.. +-.++ .-++..|+++.+ .++|.+||
T Consensus 143 ~m~ws~~g~wmiSg--D~gG----~iKyWqpnmnn----Vk~~~ahh~eaIRdlafSpnDskF~t~Sd----Dg~ikiWd 208 (464)
T KOG0284|consen 143 TMKWSHNGTWMISG--DKGG----MIKYWQPNMNN----VKIIQAHHAEAIRDLAFSPNDSKFLTCSD----DGTIKIWD 208 (464)
T ss_pred eEEEccCCCEEEEc--CCCc----eEEecccchhh----hHHhhHhhhhhhheeccCCCCceeEEecC----CCeEEEEe
Confidence 34457888899998 5443 24444555442 111 111 00122 236678884432 57899999
Q ss_pred cCCCCcccccccccc-ccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCccccccee
Q 012294 249 INSLKPVNEIGQNEI-YGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVT 327 (466)
Q Consensus 249 p~t~~~~~~~~~~~~-~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~ 327 (466)
-.. .+++. ..|.+|- +..+.|++..++|.+ ||- .+.|.+|||||++|+=+...|..++..+-
T Consensus 209 f~~-------~kee~vL~GHgwd---VksvdWHP~kgLias-gsk------DnlVKlWDprSg~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 209 FRM-------PKEERVLRGHGWD---VKSVDWHPTKGLIAS-GSK------DNLVKLWDPRSGSCLATLHGHKNTVLAVK 271 (464)
T ss_pred ccC-------CchhheeccCCCC---cceeccCCccceeEE-ccC------CceeEeecCCCcchhhhhhhccceEEEEE
Confidence 887 44432 1467775 456789998887654 442 33799999999999999999988888888
Q ss_pred eecCCCceEEEEEeeCceeEeeccccC
Q 012294 328 VSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 328 v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
....++.|- -+++|-.+-|.|+|++.
T Consensus 272 f~~n~N~Ll-t~skD~~~kv~DiR~mk 297 (464)
T KOG0284|consen 272 FNPNGNWLL-TGSKDQSCKVFDIRTMK 297 (464)
T ss_pred EcCCCCeeE-EccCCceEEEEehhHhH
Confidence 888886644 56788899999999665
No 83
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.28 E-value=1.6 Score=47.28 Aligned_cols=194 Identities=15% Similarity=0.135 Sum_probs=101.1
Q ss_pred eecCCcEEEEcC-CceeeEe-------cCC-CCCCCccccceeee-eecccC-CcEEEEecccCCCceeccceeeeeCCC
Q 012294 139 TTNYGTLHVSHG-SKITSFD-------WSM-RKKSTILTHFTAVD-SLLALS-PGVAAAGATDFSGLQVLDLENGYVKET 207 (466)
Q Consensus 139 a~~~g~lyva~G-G~ve~YD-------W~~-a~m~~~R~~~~~v~-sl~~l~-~~lYaiGG~~~~g~~~l~svE~ydp~t 207 (466)
++.++.+|+... |.+..+| |.. ......+.....+. .+.+.+ +.+|+... +| .+-++|+.+
T Consensus 58 vv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---~g-----~v~AlD~~T 129 (488)
T cd00216 58 LVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---DG-----RLVALDAET 129 (488)
T ss_pred EEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---CC-----eEEEEECCC
Confidence 345888885533 5667777 876 32221111100000 011245 67775433 22 344556653
Q ss_pred --CceeecCCCC------CceeEEEEECCeEEEEecCCC----cCCCeeEEEecCCCCccccccccccccCCceeecCc-
Q 012294 208 --LNWENVTRSS------STVQAIGSSDKHLFVSFESGR----RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA- 274 (466)
Q Consensus 208 --~~W~~va~Mr------~~~~Ava~l~~~IYaGg~~g~----~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~- 274 (466)
..|..-..-. ... +.++.++.+|+|..++. .....+-++|.+| |++. |+.-..
T Consensus 130 G~~~W~~~~~~~~~~~~~i~s-sP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-------G~~~------W~~~~~~ 195 (488)
T cd00216 130 GKQVWKFGNNDQVPPGYTMTG-APTIVKKLVIIGSSGAEFFACGVRGALRAYDVET-------GKLL------WRFYTTE 195 (488)
T ss_pred CCEeeeecCCCCcCcceEecC-CCEEECCEEEEeccccccccCCCCcEEEEEECCC-------Ccee------eEeeccC
Confidence 4576543321 122 24667888998432221 1246789999999 4422 432110
Q ss_pred -------------------ceeeEE-----eeCCeEEEEeecCC-----------CCcccceEEEEeCCCCeeeeEEcCC
Q 012294 275 -------------------TKLRWV-----SSYNLLLASGSHSD-----------ISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 275 -------------------~k~~~~-----~~~~~Lyv~Gg~~g-----------~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
....|. ...+++|+..+... +..+.++|-.+|..+++++|+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~ 275 (488)
T cd00216 196 PDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT 275 (488)
T ss_pred CCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC
Confidence 001111 13688998776321 1223458999999999999997422
Q ss_pred -c-----ccccceeee----cCCCc--eEEEEEeeCceeEeeccccC
Q 012294 320 -V-----DCFSDVTVS----DNLSA--IYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 320 -~-----d~~~~~~v~----~~~~~--i~~v~~~~g~l~~~dlr~~~ 354 (466)
. +..+...+. .++.. +..++.++|.|+.+|+++-+
T Consensus 276 ~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 276 PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCc
Confidence 1 122221221 23332 22245589999999999854
No 84
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.28 E-value=2.3 Score=44.41 Aligned_cols=115 Identities=9% Similarity=-0.026 Sum_probs=77.7
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecC--CCCc-ccceEEEEeCCCCeeeeEEc
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHS--DISK-VTGNIKFWDIRSGNVAWEVK 317 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~--g~~~-~~~sVe~yDprt~~~vW~~~ 317 (466)
.++|-++|..+++.+..+..-. .+.. ...+-+..||++..+- +..+ ..+.|++||+.|.+++.+..
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~---------~P~~--~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~ 94 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGF---------LPNP--VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE 94 (352)
T ss_pred CceEEEEECCCCEEEEEEEccC---------CCce--eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence 3789999999966555554311 0111 1224567899988731 1111 34589999999999999997
Q ss_pred CCcccc-------cceeeecCCCceEEEEEe-eCceeEeeccccCC-------CCCeEEeccCC
Q 012294 318 DEVDCF-------SDVTVSDNLSAIYKVGIN-SGEVSYMDLRKLGD-------SSEWICLGDGR 366 (466)
Q Consensus 318 ~~~d~~-------~~~~v~~~~~~i~~v~~~-~g~l~~~dlr~~~~-------~~~W~~~~~~~ 366 (466)
-+.+++ ..++++++|..||+.--. +..|.++|+.+-.- ...+++..+..
T Consensus 95 ~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~ 158 (352)
T TIGR02658 95 LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAND 158 (352)
T ss_pred cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCC
Confidence 665544 267899999999976654 78899999987542 44566665433
No 85
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.98 E-value=0.46 Score=50.20 Aligned_cols=135 Identities=20% Similarity=0.409 Sum_probs=92.7
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCC---CCeeeeEEc
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR---SGNVAWEVK 317 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr---t~~~vW~~~ 317 (466)
.++|-.||..+-+|...|-+.. . ..-++.|++........|++|+ +|.++|-| .-..-|.+.
T Consensus 265 D~TV~lWD~~~g~p~~s~~~~~----k-----~Vq~l~wh~~~p~~LLsGs~D~------~V~l~D~R~~~~s~~~wk~~ 329 (463)
T KOG0270|consen 265 DKTVKLWDVDTGKPKSSITHHG----K-----KVQTLEWHPYEPSVLLSGSYDG------TVALKDCRDPSNSGKEWKFD 329 (463)
T ss_pred CceEEEEEcCCCCcceehhhcC----C-----ceeEEEecCCCceEEEeccccc------eEEeeeccCccccCceEEec
Confidence 6899999999988777777533 1 2345789999999999998555 79999988 333348886
Q ss_pred CCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEE--EEeCCe
Q 012294 318 DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVF--CGKGGE 395 (466)
Q Consensus 318 ~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf--~~~~~~ 395 (466)
+-. =.++...-.-..|.++..+|.||-.|+|+.+ .--|.--+..... ++..+-...--+. ++..+.
T Consensus 330 g~V---Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd~~I--------Sgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 330 GEV---EKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHDDEI--------SGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred cce---EEEEecCCCceeEEEecCCceEEeeecCCCC-CceeEEEeccCCc--------ceEEecCCCCcceeeccccce
Confidence 554 4455677777778788899999999999998 4456644441111 3333322222222 345678
Q ss_pred EEEeEee
Q 012294 396 IELWSEI 402 (466)
Q Consensus 396 ~~v~~~~ 402 (466)
|.||.=.
T Consensus 398 Vklw~~~ 404 (463)
T KOG0270|consen 398 VKLWKFD 404 (463)
T ss_pred EEEEeec
Confidence 8999865
No 86
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.89 E-value=0.083 Score=54.49 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=65.2
Q ss_pred eeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCccc
Q 012294 243 SIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDC 322 (466)
Q Consensus 243 sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~ 322 (466)
.|+.||+....|++.|.-.. |. -..+..-+..--|.++++.| .+|-+||.|+++++-..+-. .
T Consensus 168 ~i~IWD~~R~~Pv~smswG~----Dt-----i~svkfNpvETsILas~~sD------rsIvLyD~R~~~Pl~KVi~~--m 230 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGA----DS-----ISSVKFNPVETSILASCASD------RSIVLYDLRQASPLKKVILT--M 230 (433)
T ss_pred eeeecccccCCccceeecCC----Cc-----eeEEecCCCcchheeeeccC------CceEEEecccCCccceeeee--c
Confidence 58999999988888887422 21 11222334555677777743 47999999999877554311 0
Q ss_pred c-cceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 323 F-SDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 323 ~-~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
+ -.+.-.+ ..-.|.++..+-+||+-|||.|.+
T Consensus 231 RTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~ 263 (433)
T KOG0268|consen 231 RTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSR 263 (433)
T ss_pred cccceecCc-cccceeeccccccceehhhhhhcc
Confidence 0 1223456 777899999999999999999985
No 87
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.87 E-value=0.82 Score=45.41 Aligned_cols=144 Identities=16% Similarity=0.269 Sum_probs=98.5
Q ss_pred eCCeEEEEeecCCCCcccceEEEEeCCCCe--eeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCe
Q 012294 282 SYNLLLASGSHSDISKVTGNIKFWDIRSGN--VAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEW 359 (466)
Q Consensus 282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W 359 (466)
-++...|++| ...|++||.++++ +|=++..|..-...++.-.+|..+| -|+.+|.+-+=|||+++..
T Consensus 50 pdk~~LAaa~-------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~~~q--- 118 (311)
T KOG0315|consen 50 PDKKDLAAAG-------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQ--- 118 (311)
T ss_pred CCcchhhhcc-------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCcccc---
Confidence 4666777777 3479999999996 4677777755668888999999999 7899999999999998741
Q ss_pred EEeccCCccccccccccceeEEEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEE
Q 012294 360 ICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITN 438 (466)
Q Consensus 360 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~ 438 (466)
|....+.+- ....++-+.+.||+. +.|.|-||.=.+ . .-+..+ |-. ..-.|++
T Consensus 119 -------R~~~~~spV-n~vvlhpnQteLis~dqsg~irvWDl~~----~-----~c~~~l-----iPe----~~~~i~s 172 (311)
T KOG0315|consen 119 -------RNYQHNSPV-NTVVLHPNQTELISGDQSGNIRVWDLGE----N-----SCTHEL-----IPE----DDTSIQS 172 (311)
T ss_pred -------hhccCCCCc-ceEEecCCcceEEeecCCCcEEEEEccC----C-----cccccc-----CCC----CCcceee
Confidence 111111233 667888889999998 889999997651 1 111111 111 1235777
Q ss_pred Eeeecc-eeEEEeeccceEEEeccC
Q 012294 439 LSFGGN-KMFVTRKGQQTVEVWQSS 462 (466)
Q Consensus 439 ~~~gg~-r~f~~~~~~~~~~vw~~~ 462 (466)
+.++=| .|.++=++.---=||+..
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEcc
Confidence 766643 355555666666778754
No 88
>PLN02772 guanylate kinase
Probab=94.79 E-value=0.075 Score=56.04 Aligned_cols=79 Identities=15% Similarity=0.080 Sum_probs=53.9
Q ss_pred CccccceeeeeecccCCcEEEEecccCCCce-eccceeeeeCCCCceeecC-----CC-CCceeEEEEECCeEEE-EecC
Q 012294 165 TILTHFTAVDSLLALSPGVAAAGATDFSGLQ-VLDLENGYVKETLNWENVT-----RS-SSTVQAIGSSDKHLFV-SFES 236 (466)
Q Consensus 165 ~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~-~l~svE~ydp~t~~W~~va-----~M-r~~~~Ava~l~~~IYa-Gg~~ 236 (466)
.++..+.+++ +++++|++|| .+... ..+.+-+||+.+++|+..+ |. |.++.|+..-++.|++ +...
T Consensus 23 ~~~~~~tav~----igdk~yv~GG--~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 23 KPKNRETSVT----IGDKTYVIGG--NHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCcceeEE----ECCEEEEEcc--cCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 3566666776 9999999999 44433 5678999999999998665 33 8888854444678999 4332
Q ss_pred CCcCCCeeEEEecCC
Q 012294 237 GRRNSNSIMVYDINS 251 (466)
Q Consensus 237 g~~~l~sVE~YDp~t 251 (466)
+. ..++.---..|
T Consensus 97 ~~--~~~~w~l~~~t 109 (398)
T PLN02772 97 AP--DDSIWFLEVDT 109 (398)
T ss_pred CC--ccceEEEEcCC
Confidence 32 24555544555
No 89
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.78 E-value=3 Score=42.00 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=87.2
Q ss_pred eeEEeeCCeEEEEeecCCCCcccceEEEEeCCC-CeeeeEEcC---CcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294 277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRS-GNVAWEVKD---EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt-~~~vW~~~~---~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
+...+-...|||++.- .+.|..|+... ++ ++... ....-+.+++++++..||..+-.+|.|.+.|+..
T Consensus 40 l~~spd~~~lyv~~~~------~~~i~~~~~~~~g~--l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 40 MVISPDKRHLYVGVRP------EFRVLSYRIADDGA--LTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred EEECCCCCEEEEEECC------CCcEEEEEECCCCc--eEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 3444456678886651 34688888863 44 33222 2223467888999999998877889999999865
Q ss_pred cCCCCCeEEeccCCccccccccccceeEEEEECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccc--eeeccccCcc
Q 012294 353 LGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEER--VFRKNLMGRV 428 (466)
Q Consensus 353 ~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~ 428 (466)
-+... ..+.. ... ...-..+.+.--++++|++ ..+.|.||.-- .. +.+... ...+--.|..
T Consensus 112 ~g~~~--~~~~~----~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~----~~----g~l~~~~~~~~~~~~g~~ 176 (330)
T PRK11028 112 DGIPV--APIQI----IEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS----DD----GHLVAQEPAEVTTVEGAG 176 (330)
T ss_pred CCCCC--Cceee----ccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC----CC----CcccccCCCceecCCCCC
Confidence 33210 11111 111 0110333344445688876 45889999742 11 122111 1011111221
Q ss_pred ccCCCCceEEEeeecceeEEEeeccceEEEeccC
Q 012294 429 TDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSS 462 (466)
Q Consensus 429 ~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 462 (466)
+ ++ ..|.-.|.+|||+-+..+.|-||+..
T Consensus 177 p---~~--~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 177 P---RH--MVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred C---ce--EEECCCCCEEEEEecCCCEEEEEEEe
Confidence 1 11 23445677999998878888888754
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.71 E-value=0.7 Score=50.88 Aligned_cols=171 Identities=18% Similarity=0.307 Sum_probs=112.4
Q ss_pred CCeeEEEecCCCCcccccc-ccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 241 SNSIMVYDINSLKPVNEIG-QNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~-~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
.++|-+||.++-+.+..++ + ...+.-+..++-+.++|.+|| +|.+||+++++++-+..+|
T Consensus 310 D~tVkVW~v~n~~~l~l~~~h-------------~~~V~~v~~~~~~lvsgs~d~------~v~VW~~~~~~cl~sl~gH 370 (537)
T KOG0274|consen 310 DNTVKVWDVTNGACLNLLRGH-------------TGPVNCVQLDEPLLVSGSYDG------TVKVWDPRTGKCLKSLSGH 370 (537)
T ss_pred CceEEEEeccCcceEEEeccc-------------cccEEEEEecCCEEEEEecCc------eEEEEEhhhceeeeeecCC
Confidence 6789999998743333333 2 112233345677778887554 7999999999999999999
Q ss_pred cccccceeeecCCCceEEEEEeeCceeEeecccc-CCCCCeEEeccCCccccccccccceeEEEEECCEEEEE-eCCeEE
Q 012294 320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL-GDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-KGGEIE 397 (466)
Q Consensus 320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~-~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~~~~~~ 397 (466)
...+-.+.++.. ..+| =|+.++.+-+-||+.. .. +-- ..+ ..+.-..+.++++.|-.+ -++.|.
T Consensus 371 ~~~V~sl~~~~~-~~~~-Sgs~D~~IkvWdl~~~~~c------~~t----l~~--h~~~v~~l~~~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 371 TGRVYSLIVDSE-NRLL-SGSLDTTIKVWDLRTKRKC------IHT----LQG--HTSLVSSLLLRDNFLVSSSADGTIK 436 (537)
T ss_pred cceEEEEEecCc-ceEE-eeeeccceEeecCCchhhh------hhh----hcC--CcccccccccccceeEeccccccEE
Confidence 755566555554 5544 5778888888888876 32 111 222 222336678888888777 555699
Q ss_pred EeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294 398 LWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS 463 (466)
Q Consensus 398 v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 463 (466)
+|..- +. ..-+.+ .. .+.+.|+.+.+| +-.++...++..+++|.-+.
T Consensus 437 ~WD~~----~~-----~~~~~~------~~---~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 437 LWDAE----EG-----ECLRTL------EG---RHVGGVSALALG-KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred Eeecc----cC-----ceeeee------cc---CCcccEEEeecC-cceEEEEecCCeeEEEeccc
Confidence 99442 11 111111 11 145679988888 89999999999999997543
No 91
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=94.64 E-value=0.018 Score=64.54 Aligned_cols=85 Identities=31% Similarity=0.318 Sum_probs=63.3
Q ss_pred CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC------------C-----c--e-eEcCCchhHHHHhcccccCccc
Q 012294 22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS------------T-----H--R-FIDRDPELFSILLSLLRTGNLP 81 (466)
Q Consensus 22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~------------~-----~--~-fiDRDp~~F~~IL~ylrtG~l~ 81 (466)
=.+|++.||+..|++||-.|+. .+++|+.+|-. + + + |-|..|.+|++||+|+||..+.
T Consensus 558 ~hDVtf~vg~~~F~aHKfIl~~--rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~ 635 (1267)
T KOG0783|consen 558 FHDVTFYVGTSMFHAHKFILCA--RSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLL 635 (1267)
T ss_pred cceEEEEecCeecccceEEEEe--ccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccccc
Confidence 3589999999999999999997 46699998752 0 1 3 4468999999999999998654
Q ss_pred cC--CCC----------cCh-------HHHHHhhccccchhhHHhh
Q 012294 82 SK--AKA----------FDI-------EDLIEESKFYNIESLLINS 108 (466)
Q Consensus 82 ~~--~~~----------~~~-------~~Ll~EA~f~~l~~l~~~~ 108 (466)
.+ .++ .|. ++|+.-++-|++.+|....
T Consensus 636 ~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~ 681 (1267)
T KOG0783|consen 636 SPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFS 681 (1267)
T ss_pred CCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence 32 111 122 2488888888888887665
No 92
>PF13854 Kelch_5: Kelch motif
Probab=94.48 E-value=0.064 Score=38.17 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=28.9
Q ss_pred CCccccceeeeeecccCCcEEEEecccCCC--ceeccceeeeeCCC
Q 012294 164 STILTHFTAVDSLLALSPGVAAAGATDFSG--LQVLDLENGYVKET 207 (466)
Q Consensus 164 ~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g--~~~l~svE~ydp~t 207 (466)
+.+|..|++++ ++++||+.|| .++ ...++.+-.+|..+
T Consensus 2 P~~R~~hs~~~----~~~~iyi~GG--~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 2 PSPRYGHSAVV----VGNNIYIFGG--YSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCccceEEEE----ECCEEEEEcC--ccCCCCCEECcEEEEECCC
Confidence 56799998887 8999999999 653 44566666666654
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.71 Score=50.00 Aligned_cols=153 Identities=21% Similarity=0.273 Sum_probs=80.9
Q ss_pred CCCCCceeeecCCcEEEEcC---CceeeEe-cCCCCCCCccc-cceeeeeecccCCcEEEEecccCCCceeccceeeeeC
Q 012294 131 RDSPSAIATTNYGTLHVSHG---SKITSFD-WSMRKKSTILT-HFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVK 205 (466)
Q Consensus 131 R~~~~a~~a~~~g~lyva~G---G~ve~YD-W~~a~m~~~R~-~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp 205 (466)
+...+++.-..+|... |+| |.++.|| +..-...+.+. +.+.|.+++ -++.+...|. -++.... +|.
T Consensus 217 ~~~vtSv~ws~~G~~L-avG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~la-W~~~~lssGs--r~~~I~~-----~dv 287 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHL-AVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLA-WNSSVLSSGS--RDGKILN-----HDV 287 (484)
T ss_pred CCceEEEEECCCCCEE-EEeecCCeEEEEehhhccccccccCCcCceeEEEe-ccCceEEEec--CCCcEEE-----EEE
Confidence 3444433444566666 556 6778888 55522222222 222232222 5678888888 5554321 121
Q ss_pred CCCceeecCCC---CCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcc-eeeE
Q 012294 206 ETLNWENVTRS---SSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT-KLRW 279 (466)
Q Consensus 206 ~t~~W~~va~M---r~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~-k~~~ 279 (466)
...+-. +..| +..+++.... ++...| ||. .|.+-+||.....|...+.... ++- .+.|
T Consensus 288 R~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGgn-----DN~~~Iwd~~~~~p~~~~~~H~----------aAVKA~aw 351 (484)
T KOG0305|consen 288 RISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGGN-----DNVVFIWDGLSPEPKFTFTEHT----------AAVKALAW 351 (484)
T ss_pred ecchhh-hhhhhcccceeeeeEECCCCCeeccCCC-----ccceEeccCCCccccEEEeccc----------eeeeEeee
Confidence 111110 0013 3334434444 445666 544 6788999996655444444333 222 3567
Q ss_pred EeeCCeEEEEeecCCCCcccceEEEEeCCCCee
Q 012294 280 VSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV 312 (466)
Q Consensus 280 ~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~ 312 (466)
.+...=|.|+|| |+. ...|..||..++..
T Consensus 352 cP~q~~lLAsGG--Gs~--D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 352 CPWQSGLLATGG--GSA--DRCIKFWNTNTGAR 380 (484)
T ss_pred CCCccCceEEcC--CCc--ccEEEEEEcCCCcE
Confidence 787888888888 654 55688888776653
No 94
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=94.47 E-value=0.11 Score=38.00 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=28.6
Q ss_pred CCeEEEEeecC-CCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 283 YNLLLASGSHS-DISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 283 ~~~Lyv~Gg~~-g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
++.||+.||.+ .....++.+-+||+.+++ |+..+.
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~--W~~~~~ 36 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNT--WTRIGD 36 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCE--EEECCC
Confidence 57899999998 334567899999999998 998633
No 95
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.36 E-value=0.82 Score=45.74 Aligned_cols=107 Identities=17% Similarity=0.251 Sum_probs=76.0
Q ss_pred EEEECC---eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceee--EEeeCCeEEEEeecCCCCc
Q 012294 223 IGSSDK---HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR--WVSSYNLLLASGSHSDISK 297 (466)
Q Consensus 223 va~l~~---~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~--~~~~~~~Lyv~Gg~~g~~~ 297 (466)
++++++ .+|.|.+ ..-+-+.||.+ |. -.|.++--.+.- -.+.+++ .|+|=+
T Consensus 16 LVV~~dskT~v~igSH-----s~~~~avd~~s-------G~------~~We~ilg~RiE~sa~vvgdf-VV~GCy----- 71 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSH-----SGIVIAVDPQS-------GN------LIWEAILGVRIECSAIVVGDF-VVLGCY----- 71 (354)
T ss_pred EEEecCCceEEEEecC-----CceEEEecCCC-------Cc------EEeehhhCceeeeeeEEECCE-EEEEEc-----
Confidence 456663 3555544 34578889999 33 558776543332 2336666 566664
Q ss_pred ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 298 VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 298 ~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
++-+...+..|++..|.+.....--....++.+++.|| .|.+||++|++|-++-+.
T Consensus 72 -~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIy-cgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 72 -SGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIY-CGSHDGNFYALDPKTYGC 127 (354)
T ss_pred -cCcEEEEEecchhheeeeeehhhhccceEEcCCCceEE-EecCCCcEEEecccccce
Confidence 44688889999998999876643346667889999999 788999999999999774
No 96
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.15 E-value=0.036 Score=52.89 Aligned_cols=85 Identities=20% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCCeEEEEECC---eEEEEeHHHhhccCCCCccccccCC-C---c--eeEcCCchhHHHHhcccccCccccCCCCcChHH
Q 012294 21 DSNIVTIDVGG---QIFQTTKQTLALAGPKSLLSKLADS-T---H--RFIDRDPELFSILLSLLRTGNLPSKAKAFDIED 91 (466)
Q Consensus 21 ~~~~V~LnVGG---~~F~t~~~tL~~~~p~s~f~~mf~~-~---~--~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~ 91 (466)
.-.++++.++| +..++|+-+|+++ |=|..+.+. + + ..-|.||++|...+.|+||.+|.+..++.-..+
T Consensus 65 qfSDlk~K~~gns~k~i~AHKfVLAAR---sD~WkfaN~~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~e 141 (280)
T KOG4591|consen 65 QFSDLKFKFAGNSDKHIPAHKFVLAAR---SDFWKFANGGDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLE 141 (280)
T ss_pred cccceeEEecCCccccCchhhhhhhhh---cchhhhccCCCcchhhhcccccCHHHHHHhheeeeccccccccchHHHHH
Confidence 34689999995 7899999999984 244455443 2 2 567899999999999999999998644444678
Q ss_pred HHHhhccccchhhHHhh
Q 012294 92 LIEESKFYNIESLLINS 108 (466)
Q Consensus 92 Ll~EA~f~~l~~l~~~~ 108 (466)
|.+-|+-|||+.|.+.|
T Consensus 142 l~e~An~FqLe~Lke~C 158 (280)
T KOG4591|consen 142 LCELANRFQLELLKERC 158 (280)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999988
No 97
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=93.60 E-value=0.33 Score=52.85 Aligned_cols=66 Identities=27% Similarity=0.360 Sum_probs=43.0
Q ss_pred eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC--------cccccce---eeecCCCceEEEEEeeCceeEeec
Q 012294 282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE--------VDCFSDV---TVSDNLSAIYKVGINSGEVSYMDL 350 (466)
Q Consensus 282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~--------~d~~~~~---~v~~~~~~i~~v~~~~g~l~~~dl 350 (466)
-.+-|+++|+.+| .||+||||+.+.|=..--. +|.+..+ ..+.+|.. +.||.-.|.+|+-||
T Consensus 185 ~~hgLla~Gt~~g------~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 185 EEHGLLACGTEDG------VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGTSTGSVLIYDL 257 (703)
T ss_pred CccceEEecccCc------eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee-EEeeccCCcEEEEEc
Confidence 4556778888544 7999999999887554322 2222222 22223333 457779999999999
Q ss_pred cccC
Q 012294 351 RKLG 354 (466)
Q Consensus 351 r~~~ 354 (466)
|.-.
T Consensus 258 Ra~~ 261 (703)
T KOG2321|consen 258 RASK 261 (703)
T ss_pred ccCC
Confidence 9854
No 98
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.31 E-value=1.9 Score=47.34 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=93.4
Q ss_pred cCCcEEEEecccCCCceeccceeeeeCCC--CceeecCCC----C-------CceeEEEEECCeEEEEecCCCcCCCeeE
Q 012294 179 LSPGVAAAGATDFSGLQVLDLENGYVKET--LNWENVTRS----S-------STVQAIGSSDKHLFVSFESGRRNSNSIM 245 (466)
Q Consensus 179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t--~~W~~va~M----r-------~~~~Ava~l~~~IYaGg~~g~~~l~sVE 245 (466)
.++.||+... .. .+-++|..+ ..|+.-... . .+.+ +++.+++||++.. ...+-
T Consensus 68 ~~g~vyv~s~--~g------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg-~av~~~~v~v~t~-----dg~l~ 133 (527)
T TIGR03075 68 VDGVMYVTTS--YS------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG-VALYDGKVFFGTL-----DARLV 133 (527)
T ss_pred ECCEEEEECC--CC------cEEEEECCCCceeeEecCCCCccccccccccccccc-ceEECCEEEEEcC-----CCEEE
Confidence 7888888654 32 244555554 356543221 1 1122 5778899999433 34688
Q ss_pred EEecCCCCccccccccccccCCceeecCc-------ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC
Q 012294 246 VYDINSLKPVNEIGQNEIYGTDIESAIPA-------TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD 318 (466)
Q Consensus 246 ~YDp~t~~~~~~~~~~~~~~~~~w~~~~~-------~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~ 318 (466)
++|.+| |+ ..|+.-.. +.-.-+..+++||+.... +..+..+.|-.+|.+|++.+|.+..
T Consensus 134 ALDa~T-------Gk------~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~-~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 134 ALDAKT-------GK------VVWSKKNGDYKAGYTITAAPLVVKGKVITGISG-GEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEECCC-------CC------EEeecccccccccccccCCcEEECCEEEEeecc-cccCCCcEEEEEECCCCceeEeccC
Confidence 999999 54 33554221 111122368888875431 2223467899999999999999653
Q ss_pred C-cc-------------------------------cccceeeecCCCceEEEEEe----eC-----------ceeEeecc
Q 012294 319 E-VD-------------------------------CFSDVTVSDNLSAIYKVGIN----SG-----------EVSYMDLR 351 (466)
Q Consensus 319 ~-~d-------------------------------~~~~~~v~~~~~~i~~v~~~----~g-----------~l~~~dlr 351 (466)
- .+ .-..+++|++.+.||.--++ ++ .|..+|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 2 11 11235888889999944433 34 68888998
Q ss_pred ccCC--------CCCeEE
Q 012294 352 KLGD--------SSEWIC 361 (466)
Q Consensus 352 ~~~~--------~~~W~~ 361 (466)
+-+- +|.|=+
T Consensus 280 TG~~~W~~Q~~~~D~wD~ 297 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDY 297 (527)
T ss_pred cCCEEEeeeCCCCCCccc
Confidence 8652 677744
No 99
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=93.30 E-value=0.39 Score=49.48 Aligned_cols=124 Identities=19% Similarity=0.336 Sum_probs=78.4
Q ss_pred eCCCCceeecCCC-----------CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccc-cccccccCCceee
Q 012294 204 VKETLNWENVTRS-----------SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEI-GQNEIYGTDIESA 271 (466)
Q Consensus 204 dp~t~~W~~va~M-----------r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~-~~~~~~~~~~w~~ 271 (466)
|...-.|...+|- |+.+. ++-.+++..|.-. | ..++-+||..|..-+..+ |||+
T Consensus 296 DrsiaVWdm~sps~it~rrVLvGHrAaVN-vVdfd~kyIVsAS-g---DRTikvW~~st~efvRtl~gHkR--------- 361 (499)
T KOG0281|consen 296 DRSIAVWDMASPTDITLRRVLVGHRAAVN-VVDFDDKYIVSAS-G---DRTIKVWSTSTCEFVRTLNGHKR--------- 361 (499)
T ss_pred CceeEEEeccCchHHHHHHHHhhhhhhee-eeccccceEEEec-C---CceEEEEeccceeeehhhhcccc---------
Confidence 3344457666653 55555 5666777444211 1 357889999995544444 2333
Q ss_pred cCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecc
Q 012294 272 IPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLR 351 (466)
Q Consensus 272 ~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr 351 (466)
...++...++|.|+|.. .++|++||..+|.+..-..+|.+-.-- +.=++-.| +-|+++|.+-+=||.
T Consensus 362 ----GIAClQYr~rlvVSGSS------DntIRlwdi~~G~cLRvLeGHEeLvRc--iRFd~krI-VSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 362 ----GIACLQYRDRLVVSGSS------DNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRI-VSGAYDGKIKVWDLQ 428 (499)
T ss_pred ----cceehhccCeEEEecCC------CceEEEEeccccHHHHHHhchHHhhhh--eeecCcee-eeccccceEEEEecc
Confidence 12345688999998873 448999999999988777777322111 22234443 257799999999998
Q ss_pred ccC
Q 012294 352 KLG 354 (466)
Q Consensus 352 ~~~ 354 (466)
..+
T Consensus 429 aal 431 (499)
T KOG0281|consen 429 AAL 431 (499)
T ss_pred ccc
Confidence 766
No 100
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.21 E-value=0.6 Score=52.19 Aligned_cols=105 Identities=14% Similarity=0.247 Sum_probs=73.4
Q ss_pred eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCC
Q 012294 277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDS 356 (466)
Q Consensus 277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~ 356 (466)
...++ |.=|+++| + ...+|++||..++.+|.-+.+|..++..+++++.|..| +-|+.+|.|-+=||.....
T Consensus 541 v~FHP--Ns~Y~aTG--S---sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~~- 611 (707)
T KOG0263|consen 541 VSFHP--NSNYVATG--S---SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANGSL- 611 (707)
T ss_pred EEECC--cccccccC--C---CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCCcc-
Confidence 34444 44567776 1 35699999999999999999999899999999988773 2556888888888887442
Q ss_pred CCeEEeccCCcccccccccc-ceeEEEEECCEEEEE--eCCeEEEeEe
Q 012294 357 SEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCG--KGGEIELWSE 401 (466)
Q Consensus 357 ~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~--~~~~~~v~~~ 401 (466)
+.. |.+ . .+ -++-==+.+|-|+|+ .+-+|-||.-
T Consensus 612 -----v~~----l~~-H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 612 -----VKQ----LKG-H-TGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred -----hhh----hhc-c-cCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 332 333 1 22 222223667888887 4557999954
No 101
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.14 E-value=1.4 Score=43.51 Aligned_cols=215 Identities=17% Similarity=0.298 Sum_probs=121.4
Q ss_pred CCcEEEEcCCceeeEecCC---CCCCCccccceeeeeecccCCc-EEEEecccCCCceeccceeeeeCCCCceeecCCC-
Q 012294 142 YGTLHVSHGSKITSFDWSM---RKKSTILTHFTAVDSLLALSPG-VAAAGATDFSGLQVLDLENGYVKETLNWENVTRS- 216 (466)
Q Consensus 142 ~g~lyva~GG~ve~YDW~~---a~m~~~R~~~~~v~sl~~l~~~-lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M- 216 (466)
|+.-+++.||--.+|-|.. .-....|.+.+-++.+.+-... +.+-|+ ++ +++..+|-.++.-.++--+
T Consensus 70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs--fD-----~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 70 DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGS--FD-----SSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecc--cc-----ceeEEEEcccCCCCccchhh
Confidence 5555546666433334544 2234446666666655554444 555555 55 4677888888876666544
Q ss_pred --CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCcccccccccc--ccCCceeecCcceeeEEeeCCeEEEEeec
Q 012294 217 --SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEI--YGTDIESAIPATKLRWVSSYNLLLASGSH 292 (466)
Q Consensus 217 --r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~--~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~ 292 (466)
+-++..+.+.+-.|.+|.- ..++-.||... |+-.. |+. +...+....-.|++.|...
T Consensus 143 ea~D~V~Si~v~~heIvaGS~-----DGtvRtydiR~-------G~l~sDy~g~------pit~vs~s~d~nc~La~~l- 203 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSV-----DGTVRTYDIRK-------GTLSSDYFGH------PITSVSFSKDGNCSLASSL- 203 (307)
T ss_pred hhcCceeEEEecccEEEeecc-----CCcEEEEEeec-------ceeehhhcCC------cceeEEecCCCCEEEEeec-
Confidence 6677744444444655543 34678999988 33221 111 1122333345666666543
Q ss_pred CCCCcccceEEEEeCCCCeeeeEEcCCc--ccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccc
Q 012294 293 SDISKVTGNIKFWDIRSGNVAWEVKDEV--DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVN 370 (466)
Q Consensus 293 ~g~~~~~~sVe~yDprt~~~vW~~~~~~--d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~ 370 (466)
.+++++.|-.|++..-+.++|. .=..|..+....-.+| -|+.+|.+||=||-.-.- ++. +.
T Consensus 204 ------~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~-sgSEDG~Vy~wdLvd~~~------~sk----~~ 266 (307)
T KOG0316|consen 204 ------DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF-SGSEDGKVYFWDLVDETQ------ISK----LS 266 (307)
T ss_pred ------cceeeecccchhHHHHHhcccccceeeeeeeecccceeEE-eccCCceEEEEEecccee------eee----ec
Confidence 5689999999999999998882 1223333444444433 466999999999865221 221 11
Q ss_pred cccccc-ceeEEEEEC--CEEEEEeCCeEEEeEe
Q 012294 371 GKRKEG-FGCKIECHA--NQVFCGKGGEIELWSE 401 (466)
Q Consensus 371 ~~~~~~-~~~~~~~~~--~~lf~~~~~~~~v~~~ 401 (466)
. +.. .-..|.||- -.++.+.+..+-.|-+
T Consensus 267 ~--~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 267 V--VSTVIVTDLSCHPTMDDFITATGHGDLFWYQ 298 (307)
T ss_pred c--CCceeEEeeecccCccceeEecCCceeceee
Confidence 0 010 122344443 4667777777766654
No 102
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=93.14 E-value=0.62 Score=48.59 Aligned_cols=130 Identities=17% Similarity=0.420 Sum_probs=81.4
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee-eEEcCC
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA-WEVKDE 319 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v-W~~~~~ 319 (466)
..+|-.||+.|-+|..+|-. +..|-. .+.|.+ ++...|+|- ..++|.+|||.+++.+ -.+.+|
T Consensus 136 D~TvR~WD~~TeTp~~t~Kg-----H~~WVl----cvawsP-Dgk~iASG~------~dg~I~lwdpktg~~~g~~l~gH 199 (480)
T KOG0271|consen 136 DTTVRLWDLDTETPLFTCKG-----HKNWVL----CVAWSP-DGKKIASGS------KDGSIRLWDPKTGQQIGRALRGH 199 (480)
T ss_pred CceEEeeccCCCCcceeecC-----CccEEE----EEEECC-Ccchhhccc------cCCeEEEecCCCCCcccccccCc
Confidence 46899999999776666643 345653 355654 778888887 3558999999999866 444444
Q ss_pred -----cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEE--EC--CEEEE
Q 012294 320 -----VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIEC--HA--NQVFC 390 (466)
Q Consensus 320 -----~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~--~~--~~lf~ 390 (466)
.=++-++..++..+ .++-++++|++.+=|+.. + .|+-- |. |+.-.+.| .| |.+|.
T Consensus 200 ~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~-~-----~~~~~----ls-----gHT~~VTCvrwGG~gliyS 263 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKL-G-----TCVRT----LS-----GHTASVTCVRWGGEGLIYS 263 (480)
T ss_pred ccceeEEeecccccCCCcc-ceecccCCCCEEEEEccC-c-----eEEEE----ec-----cCccceEEEEEcCCceEEe
Confidence 22233344455555 566677999987777654 2 22221 22 12233333 33 56776
Q ss_pred E-eCCeEEEeEee
Q 012294 391 G-KGGEIELWSEI 402 (466)
Q Consensus 391 ~-~~~~~~v~~~~ 402 (466)
+ ++..|.||-.-
T Consensus 264 gS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 264 GSQDRTIKVWRAL 276 (480)
T ss_pred cCCCceEEEEEcc
Confidence 5 88899999764
No 103
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=93.12 E-value=3.3 Score=41.71 Aligned_cols=183 Identities=18% Similarity=0.275 Sum_probs=107.3
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeC-CeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSY-NLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~-~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
.+++-.||... ...-+|.... +..|- ..+.|.|.. +-+.+.+|.|. +|.+||.++=+.-=...+|
T Consensus 126 DkTiklwnt~g-~ck~t~~~~~---~~~WV----scvrfsP~~~~p~Ivs~s~Dk------tvKvWnl~~~~l~~~~~gh 191 (315)
T KOG0279|consen 126 DKTIKLWNTLG-VCKYTIHEDS---HREWV----SCVRFSPNESNPIIVSASWDK------TVKVWNLRNCQLRTTFIGH 191 (315)
T ss_pred cceeeeeeecc-cEEEEEecCC---CcCcE----EEEEEcCCCCCcEEEEccCCc------eEEEEccCCcchhhccccc
Confidence 78888898877 1111222100 02233 245666654 78888888655 7999999998866677777
Q ss_pred cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeCCeEEEe
Q 012294 320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELW 399 (466)
Q Consensus 320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~~~~v~ 399 (466)
.--..-++|++||+.+- =|+++|+.+.-||+.-+. .|--+.+-.. ..+..--.+=+|-+..+-+|-+|
T Consensus 192 ~~~v~t~~vSpDGslca-sGgkdg~~~LwdL~~~k~----lysl~a~~~v-------~sl~fspnrywL~~at~~sIkIw 259 (315)
T KOG0279|consen 192 SGYVNTVTVSPDGSLCA-SGGKDGEAMLWDLNEGKN----LYSLEAFDIV-------NSLCFSPNRYWLCAATATSIKIW 259 (315)
T ss_pred cccEEEEEECCCCCEEe-cCCCCceEEEEEccCCce----eEeccCCCeE-------eeEEecCCceeEeeccCCceEEE
Confidence 55668889999998733 366999999999998553 2111100000 11111111235666788889999
Q ss_pred EeeeecCCCCCCCCCcccceeeccccCccccCC-CCceE-EEee--ecceeEEEeeccceEEEeccC
Q 012294 400 SEIVMGSRKSREGGPLEERVFRKNLMGRVTDMG-GSKIT-NLSF--GGNKMFVTRKGQQTVEVWQSS 462 (466)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~i~-~~~~--gg~r~f~~~~~~~~~~vw~~~ 462 (466)
..- .. ..=+.+ +-.+.|. .+. ++.|| ++++ -|.-||.-=.| |+|+|||-.
T Consensus 260 dl~----~~-----~~v~~l-~~d~~g~--s~~~~~~~clslaws~dG~tLf~g~td-~~irv~qv~ 313 (315)
T KOG0279|consen 260 DLE----SK-----AVVEEL-KLDGIGP--SSKAGDPICLSLAWSADGQTLFAGYTD-NVIRVWQVA 313 (315)
T ss_pred ecc----ch-----hhhhhc-ccccccc--ccccCCcEEEEEEEcCCCcEEEeeecC-CcEEEEEee
Confidence 873 11 001111 2222332 222 22332 3444 49999987655 799999943
No 104
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=93.10 E-value=0.58 Score=49.02 Aligned_cols=98 Identities=22% Similarity=0.269 Sum_probs=66.1
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV 320 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~ 320 (466)
.++|-+.|..|.+++..|.... +... .+...+-+..+|+++. .+.|-++|+.+++++.+..-..
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~----~~h~-----~~~~s~Dgr~~yv~~r-------dg~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG----APHA-----GLKFSPDGRYLYVANR-------DGTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST----TEEE-----EEE-TT-SSEEEEEET-------TSEEEEEETTSSSEEEEEE-SS
T ss_pred CCEEEEEECCCCeEEEEEcCCC----Ccee-----EEEecCCCCEEEEEcC-------CCeEEEEECCcccEEEEEecCC
Confidence 5789999999977777665411 1100 0011122457999853 3479999999999999986655
Q ss_pred ccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 321 DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 321 d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
.++ +++++.||..||+.|-..+.+-+.|.++++-
T Consensus 79 ~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 79 NPR-GIAVSPDGKYVYVANYEPGTVSVIDAETLEP 112 (369)
T ss_dssp EEE-EEEE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred Ccc-eEEEcCCCCEEEEEecCCCceeEeccccccc
Confidence 444 4889999999999999999999999999883
No 105
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=92.90 E-value=0.81 Score=48.18 Aligned_cols=141 Identities=18% Similarity=0.269 Sum_probs=94.9
Q ss_pred ECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccc-cCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEE
Q 012294 226 SDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIY-GTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIK 303 (466)
Q Consensus 226 l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~-~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe 303 (466)
.+|.+-+ ||.+ +.--+||..| |++.-| .|.. .+...+.|- -+|...|.|+. .+++.
T Consensus 313 ~DGSL~~tGGlD-----~~~RvWDlRt-------gr~im~L~gH~---k~I~~V~fs-PNGy~lATgs~------Dnt~k 370 (459)
T KOG0272|consen 313 PDGSLAATGGLD-----SLGRVWDLRT-------GRCIMFLAGHI---KEILSVAFS-PNGYHLATGSS------DNTCK 370 (459)
T ss_pred CCCceeeccCcc-----chhheeeccc-------CcEEEEecccc---cceeeEeEC-CCceEEeecCC------CCcEE
Confidence 3567777 6653 2335899999 776654 2211 112233444 48899999983 45899
Q ss_pred EEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEE
Q 012294 304 FWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIE 382 (466)
Q Consensus 304 ~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~ 382 (466)
+||.|.-+.+-+.-+|.+-.+++-.++..+...+-|+++.+ +-|=+ +..|.+++. |.+ -++ --+.--
T Consensus 371 VWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t---~kiWs---~~~~~~~ks----LaG--He~kV~s~Di 438 (459)
T KOG0272|consen 371 VWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT---VKIWS---TRTWSPLKS----LAG--HEGKVISLDI 438 (459)
T ss_pred EeeecccccceecccccchhhheEecccCCeEEEEcccCcc---eeeec---CCCcccchh----hcC--CccceEEEEe
Confidence 99999999999999998888999999866766667788888 43333 577888888 775 222 222223
Q ss_pred EECCEEEEE--eCCeEEEeE
Q 012294 383 CHANQVFCG--KGGEIELWS 400 (466)
Q Consensus 383 ~~~~~lf~~--~~~~~~v~~ 400 (466)
.+++|.+++ .+-++.+|.
T Consensus 439 s~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 439 SPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCCceEEEeccCceeeecc
Confidence 456777766 556666664
No 106
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=92.87 E-value=0.069 Score=56.87 Aligned_cols=86 Identities=20% Similarity=0.168 Sum_probs=73.1
Q ss_pred CCCCCeEEEEEC-----CeEEEEeHHHhhccCCCCccccccCC----C---c-eeEcCCchhHHHHhcccccCccccCCC
Q 012294 19 SIDSNIVTIDVG-----GQIFQTTKQTLALAGPKSLLSKLADS----T---H-RFIDRDPELFSILLSLLRTGNLPSKAK 85 (466)
Q Consensus 19 ~~~~~~V~LnVG-----G~~F~t~~~tL~~~~p~s~f~~mf~~----~---~-~fiDRDp~~F~~IL~ylrtG~l~~~~~ 85 (466)
.+...++++-|| -+.|+.||-.|+. .+.-|.+||.+ + + -.-|.+|.+|...|.|+|...+.+.
T Consensus 111 n~~~adv~fivg~~~~~~q~~paHk~vla~--gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~-- 186 (521)
T KOG2075|consen 111 NELLADVHFIVGEEDGGSQRIPAHKLVLAD--GSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLA-- 186 (521)
T ss_pred CcccceeEEEeccCCCcccccchhhhhhhc--chHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhh--
Confidence 444678999998 3899999999997 56799999986 2 2 3779999999999999999887764
Q ss_pred CcChHHHHHhhccccchhhHHhh
Q 012294 86 AFDIEDLIEESKFYNIESLLINS 108 (466)
Q Consensus 86 ~~~~~~Ll~EA~f~~l~~l~~~~ 108 (466)
..++..++..|+=|-+..|.++|
T Consensus 187 ~dtvi~tl~~AkKY~VpaLer~C 209 (521)
T KOG2075|consen 187 ADTVITTLYAAKKYLVPALERQC 209 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Confidence 46788999999999999999998
No 107
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.55 E-value=6.7 Score=43.10 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=48.6
Q ss_pred eCCeEEEEeecCCC---------CcccceEEEEeCCCCeeeeEEcCC------ccccc-ceeee--cCCC--ceEEEEEe
Q 012294 282 SYNLLLASGSHSDI---------SKVTGNIKFWDIRSGNVAWEVKDE------VDCFS-DVTVS--DNLS--AIYKVGIN 341 (466)
Q Consensus 282 ~~~~Lyv~Gg~~g~---------~~~~~sVe~yDprt~~~vW~~~~~------~d~~~-~~~v~--~~~~--~i~~v~~~ 341 (466)
-.|+||+-.|.-.| +-+.++|=..|++|++.+|.+-.. -|.-+ .+-++ .++. .+..+..+
T Consensus 244 ~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K 323 (527)
T TIGR03075 244 ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADR 323 (527)
T ss_pred CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCC
Confidence 57899998876222 224668999999999999998643 12212 22222 3554 35556669
Q ss_pred eCceeEeeccccC
Q 012294 342 SGEVSYMDLRKLG 354 (466)
Q Consensus 342 ~g~l~~~dlr~~~ 354 (466)
+|.+|++|=+.-+
T Consensus 324 ~G~~~vlDr~tG~ 336 (527)
T TIGR03075 324 NGFFYVLDRTNGK 336 (527)
T ss_pred CceEEEEECCCCc
Confidence 9999999977633
No 108
>PF13854 Kelch_5: Kelch motif
Probab=92.48 E-value=0.25 Score=35.05 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=26.8
Q ss_pred CCceeEEEEECCeEEE-EecCC--CcCCCeeEEEecCC
Q 012294 217 SSTVQAIGSSDKHLFV-SFESG--RRNSNSIMVYDINS 251 (466)
Q Consensus 217 r~~~~Ava~l~~~IYa-Gg~~g--~~~l~sVE~YDp~t 251 (466)
|..++ +++.+++||+ ||.++ ....+.+.+||..+
T Consensus 5 R~~hs-~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 5 RYGHS-AVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred ccceE-EEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 67776 6788999999 88863 44488999999876
No 109
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.45 E-value=14 Score=37.84 Aligned_cols=249 Identities=14% Similarity=0.131 Sum_probs=129.9
Q ss_pred CCcEEEEecccCCCceeccceeee--eCCCCceeecCCC----CCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCC
Q 012294 180 SPGVAAAGATDFSGLQVLDLENGY--VKETLNWENVTRS----SSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINS 251 (466)
Q Consensus 180 ~~~lYaiGG~~~~g~~~l~svE~y--dp~t~~W~~va~M----r~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t 251 (466)
+..||++.. .. ..-..+..| ++.+.+.+.+... ..-+. +++. +..||+..+. ..+|.+|+...
T Consensus 48 ~~~LY~~~e--~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~-i~~~~~g~~l~vany~----~g~v~v~~l~~ 118 (345)
T PF10282_consen 48 GRRLYVVNE--GS--GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH-IAVDPDGRFLYVANYG----GGSVSVFPLDD 118 (345)
T ss_dssp SSEEEEEET--TS--STTTEEEEEEEETTTTEEEEEEEEEESSSCEEE-EEECTTSSEEEEEETT----TTEEEEEEECT
T ss_pred CCEEEEEEc--cc--cCCCCEEEEEECCCcceeEEeeeeccCCCCcEE-EEEecCCCEEEEEEcc----CCeEEEEEccC
Confidence 356888865 21 011234444 3433455444332 22233 5553 3468884432 56788888877
Q ss_pred CCccccccccccccC---CceeecCc--ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe--ee---eEEcCCcc
Q 012294 252 LKPVNEIGQNEIYGT---DIESAIPA--TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN--VA---WEVKDEVD 321 (466)
Q Consensus 252 ~~~~~~~~~~~~~~~---~~w~~~~~--~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~v---W~~~~~~d 321 (466)
.-.+.+......+.+ +.-....+ -.+.+.+-++.|||+-- | .+.|..|+...+. .. .-..+++.
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl--G----~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL--G----ADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET--T----TTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec--C----CCEEEEEEEeCCCceEEEeeccccccCC
Confidence 211111110000000 00000011 12233455678888765 3 3368888877665 21 12223344
Q ss_pred cccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccc-ceeEEEEE--CCEEEEEe--CCeE
Q 012294 322 CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECH--ANQVFCGK--GGEI 396 (466)
Q Consensus 322 ~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~--~~~lf~~~--~~~~ 396 (466)
-=-.+.+.+++..+|+++-.+++|.+.++..-. +.+..+..-. .+....... ....|+.. +..||++- .+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~--g~~~~~~~~~-~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD--GSLTEIQTIS-TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT--TEEEEEEEEE-SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccC--CceeEEEEee-eccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 444688999999999999999999999988322 2333222200 010001111 45566666 78899993 4468
Q ss_pred EEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEee--ecceeEEEeeccceEEEecc
Q 012294 397 ELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEVWQS 461 (466)
Q Consensus 397 ~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~ 461 (466)
.+|.-= .+. +.|+ + ++..+ .+|..-.+|++ -|++|+|+-.+.+.|.|++-
T Consensus 270 ~vf~~d---~~~----g~l~----~---~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 270 SVFDLD---PAT----GTLT----L---VQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEEEC---TTT----TTEE----E---EEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEe---cCC----CceE----E---EEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 777651 011 1121 1 11111 23444888888 99999999999999999863
No 110
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=92.43 E-value=4 Score=45.06 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=94.0
Q ss_pred CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEE--EEC--CeEEEEecC
Q 012294 161 RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIG--SSD--KHLFVSFES 236 (466)
Q Consensus 161 a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava--~l~--~~IYaGg~~ 236 (466)
+-..+.|.+.+.|.++ .+++.+.+.|. ++| ++-.||+.+.+ -+..++...++|. +++ +.+|-|..
T Consensus 322 ~~l~l~~~h~~~V~~v-~~~~~~lvsgs--~d~-----~v~VW~~~~~~--cl~sl~gH~~~V~sl~~~~~~~~~Sgs~- 390 (537)
T KOG0274|consen 322 ACLNLLRGHTGPVNCV-QLDEPLLVSGS--YDG-----TVKVWDPRTGK--CLKSLSGHTGRVYSLIVDSENRLLSGSL- 390 (537)
T ss_pred ceEEEeccccccEEEE-EecCCEEEEEe--cCc-----eEEEEEhhhce--eeeeecCCcceEEEEEecCcceEEeeee-
Confidence 5556666544555444 35566666666 665 46777777554 3444422222222 223 33443443
Q ss_pred CCcCCCeeEEEecCCC-CccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE
Q 012294 237 GRRNSNSIMVYDINSL-KPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE 315 (466)
Q Consensus 237 g~~~l~sVE~YDp~t~-~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~ 315 (466)
..+|.+||+++. +.+.....-. .-..-+.+.+.+++++..|+ +|++||..+++++-.
T Consensus 391 ----D~~IkvWdl~~~~~c~~tl~~h~------------~~v~~l~~~~~~Lvs~~aD~------~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 391 ----DTTIKVWDLRTKRKCIHTLQGHT------------SLVSSLLLRDNFLVSSSADG------TIKLWDAEEGECLRT 448 (537)
T ss_pred ----ccceEeecCCchhhhhhhhcCCc------------ccccccccccceeEeccccc------cEEEeecccCceeee
Confidence 378999999995 3333333311 11123346777888888555 899999999999999
Q ss_pred EcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 316 VKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 316 ~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
..++ . ..+..-..+...+...+.+|.+..-|||+...
T Consensus 449 ~~~~~~---~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 449 LEGRHV---GGVSALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eccCCc---ccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence 9773 3 22222222234444566999999999999664
No 111
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=92.18 E-value=5.8 Score=43.98 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=99.2
Q ss_pred CCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC------CCceeEEEEECCeEEE-Eec
Q 012294 163 KSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS------SSTVQAIGSSDKHLFV-SFE 235 (466)
Q Consensus 163 m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M------r~~~~Ava~l~~~IYa-Gg~ 235 (466)
....-.+..++-++..+.+..-.|-. ..+ ++...+|..+..-....-. +.+.+ ..-.|-.+|+ ||.
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsa--sGD----sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~c-f~~~n~~vF~tGgR 165 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSA--SGD----STIRPWDVKTSRLVGGRLNLGHTGSVKSEC-FMPTNPAVFCTGGR 165 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEc--cCC----ceeeeeeeccceeecceeecccccccchhh-hccCCCcceeeccC
Confidence 34445667778888888877655544 222 2455666666665544211 11221 2344556999 887
Q ss_pred CCCcCCCeeEEEecCCC--------------------CccccccccccccCCceeecCccee----eEEeeCCeEEEEee
Q 012294 236 SGRRNSNSIMVYDINSL--------------------KPVNEIGQNEIYGTDIESAIPATKL----RWVSSYNLLLASGS 291 (466)
Q Consensus 236 ~g~~~l~sVE~YDp~t~--------------------~~~~~~~~~~~~~~~~w~~~~~~k~----~~~~~~~~Lyv~Gg 291 (466)
++. +..||..-. +|..+.-++. .+|.+-..+-. ..+..++-..|..|
T Consensus 166 Dg~-----illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~----~k~kA~s~ti~ssvTvv~fkDe~tlaSag 236 (720)
T KOG0321|consen 166 DGE-----ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI----RKWKAASNTIFSSVTVVLFKDESTLASAG 236 (720)
T ss_pred CCc-----EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc----cccccccCceeeeeEEEEEeccceeeecc
Confidence 553 445554431 2333333333 34443322211 12335555556555
Q ss_pred cCCCCcccceEEEEeCCCCeeeeEEcCC-cc----------cccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 292 HSDISKVTGNIKFWDIRSGNVAWEVKDE-VD----------CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 292 ~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d----------~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
- ..+.|.+||.|++.+.-+--.. .| .+.-+.+|..|..||+=|. |+.+|+-+|+++..
T Consensus 237 a-----~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~ 305 (720)
T KOG0321|consen 237 A-----ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSI 305 (720)
T ss_pred C-----CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCc
Confidence 2 2558999999999866544322 11 1234567788999999998 99999999999883
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=92.17 E-value=2.7 Score=42.74 Aligned_cols=100 Identities=22% Similarity=0.272 Sum_probs=58.3
Q ss_pred eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCC
Q 012294 229 HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR 308 (466)
Q Consensus 229 ~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr 308 (466)
.+|+|+- ...|-+||..| +..-.+|. +. .+...+......|+ +++||+|. +|++||||
T Consensus 67 ~~~~G~~-----dg~vr~~Dln~-~~~~~igt------h~---~~i~ci~~~~~~~~-vIsgsWD~------~ik~wD~R 124 (323)
T KOG1036|consen 67 TIVTGGL-----DGQVRRYDLNT-GNEDQIGT------HD---EGIRCIEYSYEVGC-VISGSWDK------TIKFWDPR 124 (323)
T ss_pred eEEEecc-----CceEEEEEecC-Ccceeecc------CC---CceEEEEeeccCCe-EEEcccCc------cEEEEecc
Confidence 5877654 45789999999 11111111 10 01111122223444 46677655 79999999
Q ss_pred CCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 309 SGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 309 t~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
...++=...-+. .=.+++..++. -.||..+-.+.+-|||.++
T Consensus 125 ~~~~~~~~d~~k---kVy~~~v~g~~-LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 125 NKVVVGTFDQGK---KVYCMDVSGNR-LVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ccccccccccCc---eEEEEeccCCE-EEEeecCceEEEEEccccc
Confidence 866554443333 11234444444 3488888999999999998
No 113
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.12 E-value=1.8 Score=43.02 Aligned_cols=142 Identities=20% Similarity=0.273 Sum_probs=89.2
Q ss_pred CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEE-CC-eEEEEecCCCcCCCeeEEEecCCCCc
Q 012294 180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSS-DK-HLFVSFESGRRNSNSIMVYDINSLKP 254 (466)
Q Consensus 180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l-~~-~IYaGg~~g~~~l~sVE~YDp~t~~~ 254 (466)
+.+..|++| .. -+--||..++.=.+++.- +.++.+|++- +| .+|.|+++ .+|-+||...+
T Consensus 51 dk~~LAaa~--~q------hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-----gt~kIWdlR~~-- 115 (311)
T KOG0315|consen 51 DKKDLAAAG--NQ------HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-----GTVKIWDLRSL-- 115 (311)
T ss_pred Ccchhhhcc--CC------eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-----ceEEEEeccCc--
Confidence 456667777 32 356788877762222222 5566655553 33 47877764 46789998873
Q ss_pred cccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCC
Q 012294 255 VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLS 333 (466)
Q Consensus 255 ~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~ 333 (466)
.-|+.|..+. +...+..++...-|++.- -++.|+.||.+++.+--+..+. ......++|..||+
T Consensus 116 ----~~qR~~~~~s----pVn~vvlhpnQteLis~d-------qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 116 ----SCQRNYQHNS----PVNTVVLHPNQTELISGD-------QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS 180 (311)
T ss_pred ----ccchhccCCC----CcceEEecCCcceEEeec-------CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc
Confidence 4455443231 223344445666665533 2568999999999877776654 55667889999999
Q ss_pred ceEEEEEeeCceeEeeccc
Q 012294 334 AIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 334 ~i~~v~~~~g~l~~~dlr~ 352 (466)
++- ..-.-|++|+=+|-.
T Consensus 181 ml~-a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 181 MLA-AANNKGNCYVWRLLN 198 (311)
T ss_pred EEE-EecCCccEEEEEccC
Confidence 943 222678999987655
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.02 E-value=1.8 Score=46.00 Aligned_cols=195 Identities=16% Similarity=0.235 Sum_probs=122.7
Q ss_pred EEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceE
Q 012294 224 GSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNI 302 (466)
Q Consensus 224 a~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sV 302 (466)
+..+|+.+| ||. .+-|.+||+.|++++.....-+ .+.+.+..---.+.||+++- ..+|
T Consensus 210 vS~Dgkylatgg~-----d~~v~Iw~~~t~ehv~~~~ghr---------~~V~~L~fr~gt~~lys~s~-------Drsv 268 (479)
T KOG0299|consen 210 VSSDGKYLATGGR-----DRHVQIWDCDTLEHVKVFKGHR---------GAVSSLAFRKGTSELYSASA-------DRSV 268 (479)
T ss_pred EcCCCcEEEecCC-----CceEEEecCcccchhhcccccc---------cceeeeeeecCccceeeeec-------CCce
Confidence 445667777 654 3457899999977776632212 13445555556778888764 5589
Q ss_pred EEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEE
Q 012294 303 KFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIE 382 (466)
Q Consensus 303 e~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~ 382 (466)
.+|+......|=++-+|+|-+.++++-.....+ .||+-|.++-+-++ .+..+.+-. -.+++=-.++
T Consensus 269 kvw~~~~~s~vetlyGHqd~v~~IdaL~reR~v-tVGgrDrT~rlwKi------------~eesqlifr-g~~~sidcv~ 334 (479)
T KOG0299|consen 269 KVWSIDQLSYVETLYGHQDGVLGIDALSRERCV-TVGGRDRTVRLWKI------------PEESQLIFR-GGEGSIDCVA 334 (479)
T ss_pred EEEehhHhHHHHHHhCCccceeeechhcccceE-EeccccceeEEEec------------cccceeeee-CCCCCeeeEE
Confidence 999999999888999999999998888777772 24446666322222 233333332 0122334556
Q ss_pred EECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccc--cCCCC--ceEEE-eeecceeEEEeeccce
Q 012294 383 CHANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVT--DMGGS--KITNL-SFGGNKMFVTRKGQQT 455 (466)
Q Consensus 383 ~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~--~i~~~-~~gg~r~f~~~~~~~~ 455 (466)
..+..=|++ .+|+|-+||-..... ..+ +++-=|-.+ +.-.+ =|+.+ .++|.-||++=.-.-.
T Consensus 335 ~In~~HfvsGSdnG~IaLWs~~KKkp-------lf~----~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~ 403 (479)
T KOG0299|consen 335 FINDEHFVSGSDNGSIALWSLLKKKP-------LFT----SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC 403 (479)
T ss_pred EecccceeeccCCceEEEeeecccCc-------eeE----eeccccccCCccccccccceeeeEecccCceEEecCCCCc
Confidence 667777776 789999999863211 001 111111111 11222 46665 4799999999999999
Q ss_pred EEEeccCCC
Q 012294 456 VEVWQSSSR 464 (466)
Q Consensus 456 ~~vw~~~~~ 464 (466)
|-+|.+...
T Consensus 404 vrLW~i~~g 412 (479)
T KOG0299|consen 404 VRLWKIEDG 412 (479)
T ss_pred eEEEEecCC
Confidence 999998653
No 115
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=91.99 E-value=1.9 Score=44.95 Aligned_cols=87 Identities=9% Similarity=0.046 Sum_probs=60.9
Q ss_pred CceeecCcceeeEEeeCCeEEEEe--ecCCCCc-ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCC-ceEEEEEee
Q 012294 267 DIESAIPATKLRWVSSYNLLLASG--SHSDISK-VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLS-AIYKVGINS 342 (466)
Q Consensus 267 ~~w~~~~~~k~~~~~~~~~Lyv~G--g~~g~~~-~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~-~i~~v~~~~ 342 (466)
.+|.....-.+...+-++.|||.. +-.|+.. --+.|..+|.++.+++-... -+..--.+++++|+. .||..+..+
T Consensus 243 ~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 243 DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCC
Confidence 356655533355666789999943 1111111 12379999999999885542 133446889999999 999999999
Q ss_pred CceeEeeccccC
Q 012294 343 GEVSYMDLRKLG 354 (466)
Q Consensus 343 g~l~~~dlr~~~ 354 (466)
++|.++|+.+..
T Consensus 322 ~~VsViD~~t~k 333 (352)
T TIGR02658 322 KTLYIFDAETGK 333 (352)
T ss_pred CcEEEEECcCCe
Confidence 999999997764
No 116
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=91.95 E-value=1.7 Score=43.06 Aligned_cols=112 Identities=23% Similarity=0.399 Sum_probs=82.0
Q ss_pred eEE-eeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCC
Q 012294 278 RWV-SSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDS 356 (466)
Q Consensus 278 ~~~-~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~ 356 (466)
.|+ +-.|-|+-+|| .+-+.+||.++++..-+.++|.|-.-.+.-...++-|+ -|+.+|++-+=|++....
T Consensus 120 m~ldP~enSi~~AgG-------D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~- 190 (325)
T KOG0649|consen 120 MWLDPSENSILFAGG-------DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKH- 190 (325)
T ss_pred eEeccCCCcEEEecC-------CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee-ecCCCccEEEEeccccce-
Confidence 455 36777777887 45799999999999999999988877777767777777 688999999999998664
Q ss_pred CCeEEeccCCccccccccccce---eEEEEECCEEEEEeCCeEEEeEee
Q 012294 357 SEWICLGDGRKMVNGKRKEGFG---CKIECHANQVFCGKGGEIELWSEI 402 (466)
Q Consensus 357 ~~W~~~~~~~~~m~~~~~~~~~---~~~~~~~~~lf~~~~~~~~v~~~~ 402 (466)
|.+=+-.|.-+..+|. .+ -.|+....|+.|..|-.+.+|-=.
T Consensus 191 ---v~~ie~yk~~~~lRp~-~g~wigala~~edWlvCGgGp~lslwhLr 235 (325)
T KOG0649|consen 191 ---VSMIEPYKNPNLLRPD-WGKWIGALAVNEDWLVCGGGPKLSLWHLR 235 (325)
T ss_pred ---eEEeccccChhhcCcc-cCceeEEEeccCceEEecCCCceeEEecc
Confidence 3222212211111232 22 357778899999999999999764
No 117
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=91.94 E-value=1.7 Score=44.16 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=60.0
Q ss_pred CcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294 273 PATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 273 ~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
|.|.+.|..-++.||.+|- ..+|..||.++++++.....|.++.-.+..++-|..|-.=+.-+|++-+-|+|+
T Consensus 92 AVM~l~~~~d~s~i~S~gt-------Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGT-------DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeEeeeeccCCCEEEEecC-------CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 5788889888888887774 558999999999999999999877777666665555544444888999999997
Q ss_pred cCC
Q 012294 353 LGD 355 (466)
Q Consensus 353 ~~~ 355 (466)
-+.
T Consensus 165 k~~ 167 (338)
T KOG0265|consen 165 KEA 167 (338)
T ss_pred cch
Confidence 664
No 118
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.74 E-value=1.6 Score=43.77 Aligned_cols=105 Identities=15% Similarity=0.061 Sum_probs=69.8
Q ss_pred cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC--CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCcc
Q 012294 179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS--SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPV 255 (466)
Q Consensus 179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M--r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~ 255 (466)
-++.+|.--| ..|. +++..||+.+.+=....++ +..+.+++.++++||. -.. .+.+-+||+.|++++
T Consensus 54 ~~g~LyESTG--~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 54 DDGTLYESTG--LYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNTLKKI 123 (264)
T ss_dssp ETTEEEEEEC--STTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTTTEEE
T ss_pred CCCEEEEeCC--CCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-----CCeEEEEccccceEE
Confidence 3578888877 5564 5677889999875555555 6666779999999999 654 567899999998877
Q ss_pred ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCee
Q 012294 256 NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV 312 (466)
Q Consensus 256 ~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~ 312 (466)
.+..- .+.+|-.. .-+..|+.+-| ++.+..+||.+=+.
T Consensus 124 ~~~~y----~~EGWGLt--------~dg~~Li~SDG-------S~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 124 GTFPY----PGEGWGLT--------SDGKRLIMSDG-------SSRLYFLDPETFKE 161 (264)
T ss_dssp EEEE-----SSS--EEE--------ECSSCEEEE-S-------SSEEEEE-TTT-SE
T ss_pred EEEec----CCcceEEE--------cCCCEEEEECC-------ccceEEECCcccce
Confidence 76654 45788753 23556666655 44789999987653
No 119
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.71 E-value=1 Score=44.52 Aligned_cols=93 Identities=23% Similarity=0.396 Sum_probs=56.8
Q ss_pred CCeeEEEecCCCCcccccccccc-ccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe--eeeEEc
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEI-YGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN--VAWEVK 317 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~-~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~--~vW~~~ 317 (466)
.+.|.+||.+| |++.- |.+..- ..+.....-..-+.++|+ +.++|++||=|+.+ +|=.+.
T Consensus 80 Dk~v~vwDV~T-------Gkv~Rr~rgH~a----qVNtV~fNeesSVv~Sgs------fD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 80 DKAVQVWDVNT-------GKVDRRFRGHLA----QVNTVRFNEESSVVASGS------FDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred CceEEEEEccc-------Ceeeeecccccc----eeeEEEecCcceEEEecc------ccceeEEEEcccCCCCccchhh
Confidence 36899999999 55431 212211 111112224455667776 45689999999986 222222
Q ss_pred CCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294 318 DEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL 353 (466)
Q Consensus 318 ~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~ 353 (466)
+..|..+.+.+.... -..|+.+|++-.-|||+-
T Consensus 143 ea~D~V~Si~v~~he---IvaGS~DGtvRtydiR~G 175 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHE---IVAGSVDGTVRTYDIRKG 175 (307)
T ss_pred hhcCceeEEEecccE---EEeeccCCcEEEEEeecc
Confidence 335666665555433 337889999999999983
No 120
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=91.63 E-value=1.1 Score=47.24 Aligned_cols=80 Identities=15% Similarity=0.289 Sum_probs=60.1
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV 320 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~ 320 (466)
.+++-+||...-+.+..|..-+ |- .+++..-+-.|...|.++| .+++.+|.+++-+++.+..+|.
T Consensus 366 Dnt~kVWDLR~r~~ly~ipAH~----nl-----VS~Vk~~p~~g~fL~Tasy------D~t~kiWs~~~~~~~ksLaGHe 430 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIPAHS----NL-----VSQVKYSPQEGYFLVTASY------DNTVKIWSTRTWSPLKSLAGHE 430 (459)
T ss_pred CCcEEEeeecccccceeccccc----ch-----hhheEecccCCeEEEEccc------CcceeeecCCCcccchhhcCCc
Confidence 6889999999844444443322 11 2344455567888888884 5589999999999999999999
Q ss_pred ccccceeeecCCCce
Q 012294 321 DCFSDVTVSDNLSAI 335 (466)
Q Consensus 321 d~~~~~~v~~~~~~i 335 (466)
+++..++.+.++..|
T Consensus 431 ~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 431 GKVISLDISPDSQAI 445 (459)
T ss_pred cceEEEEeccCCceE
Confidence 999999999999883
No 121
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.53 E-value=1.2 Score=49.87 Aligned_cols=146 Identities=18% Similarity=0.244 Sum_probs=98.7
Q ss_pred CcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCcccccc
Q 012294 181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIG 259 (466)
Q Consensus 181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~ 259 (466)
|.-+|-++ +|+...|=+++..+|..-- +..+ +-+.++.+..|.=|+ .|. ...+|-.||..| |
T Consensus 505 GyYFatas--~D~tArLWs~d~~~PlRif---aghl-sDV~cv~FHPNs~Y~aTGS----sD~tVRlWDv~~-------G 567 (707)
T KOG0263|consen 505 GYYFATAS--HDQTARLWSTDHNKPLRIF---AGHL-SDVDCVSFHPNSNYVATGS----SDRTVRLWDVST-------G 567 (707)
T ss_pred ceEEEecC--CCceeeeeecccCCchhhh---cccc-cccceEEECCcccccccCC----CCceEEEEEcCC-------C
Confidence 34445555 6666655555555544321 2222 333446677777777 432 157899999999 4
Q ss_pred c-cccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEE
Q 012294 260 Q-NEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKV 338 (466)
Q Consensus 260 ~-~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v 338 (466)
. .|+|.|..- +...+... -+|+-.|+|+.+| .|-+||..+++.|-++.+|.+..-.+..+.+|.. .++
T Consensus 568 ~~VRiF~GH~~---~V~al~~S-p~Gr~LaSg~ed~------~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v-Las 636 (707)
T KOG0263|consen 568 NSVRIFTGHKG---PVTALAFS-PCGRYLASGDEDG------LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV-LAS 636 (707)
T ss_pred cEEEEecCCCC---ceEEEEEc-CCCceEeecccCC------cEEEEEcCCCcchhhhhcccCceeEEEEecCCCE-EEe
Confidence 3 346755331 22333333 3788888888555 6999999999999999999888888999999876 668
Q ss_pred EEeeCceeEeeccccC
Q 012294 339 GINSGEVSYMDLRKLG 354 (466)
Q Consensus 339 ~~~~g~l~~~dlr~~~ 354 (466)
|+.+-.|-+=|+...-
T Consensus 637 gg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 637 GGADNSVRLWDLTKVI 652 (707)
T ss_pred cCCCCeEEEEEchhhc
Confidence 8888888888888765
No 122
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=91.19 E-value=3.3 Score=43.39 Aligned_cols=150 Identities=17% Similarity=0.342 Sum_probs=98.4
Q ss_pred eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecccc---
Q 012294 277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL--- 353 (466)
Q Consensus 277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~--- 353 (466)
.+..+ ++.-+|.|+ | ..+|++||+.|.++.-+.++|..=..-++-++|+..|- -|.++|++-+=|=.+-
T Consensus 121 ~~fsp-~g~~l~tGs--G----D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iA-SG~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 121 VQFSP-TGSRLVTGS--G----DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIA-SGSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred EEecC-CCceEEecC--C----CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhh-ccccCCeEEEecCCCCCcc
Confidence 33444 566667776 3 34899999999999999999844447777899988743 4558888766663332
Q ss_pred ----CCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccc
Q 012294 354 ----GDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVT 429 (466)
Q Consensus 354 ----~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 429 (466)
-++-.|..-=...| ++- .++ |+ .+| =++++++|-+|.-. ..+. =+++-|+
T Consensus 193 g~~l~gH~K~It~Lawep-~hl-~p~-~r-~la------s~skDg~vrIWd~~-------------~~~~-~~~lsgH-- 246 (480)
T KOG0271|consen 193 GRALRGHKKWITALAWEP-LHL-VPP-CR-RLA------SSSKDGSVRIWDTK-------------LGTC-VRTLSGH-- 246 (480)
T ss_pred cccccCcccceeEEeecc-ccc-CCC-cc-cee------cccCCCCEEEEEcc-------------CceE-EEEeccC--
Confidence 23455643222222 221 133 32 222 24589999999875 1111 2233333
Q ss_pred cCCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294 430 DMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS 463 (466)
Q Consensus 430 ~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 463 (466)
...||-+--||+-|..+-+-...|.||+...
T Consensus 247 ---T~~VTCvrwGG~gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 247 ---TASVTCVRWGGEGLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred ---ccceEEEEEcCCceEEecCCCceEEEEEccc
Confidence 5589999999999999999999999998754
No 123
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=91.07 E-value=17 Score=40.56 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=63.7
Q ss_pred cceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccce
Q 012294 299 TGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFG 378 (466)
Q Consensus 299 ~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~ 378 (466)
-|+|..||+..++.+=+.+-+..-...++++++++.+| +.+.++.++-..+... ...||..+.+.-.-. .=
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf-saGvd~~ii~~~~~~~--~~~wv~~~~r~~h~h------dv 294 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF-SAGVDPKIIQYSLTTN--KSEWVINSRRDLHAH------DV 294 (691)
T ss_pred CceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE-EccCCCceEEEEecCC--ccceeeeccccCCcc------cc
Confidence 45899999999998888877743335578888889977 5667888744444333 345998776443311 22
Q ss_pred eEEEEECCEEEEEeCCeEEEeEee
Q 012294 379 CKIECHANQVFCGKGGEIELWSEI 402 (466)
Q Consensus 379 ~~~~~~~~~lf~~~~~~~~v~~~~ 402 (466)
-++++|++++|..--|-.=+.+..
T Consensus 295 rs~av~~~~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 295 RSMAVIENALISGGRDFTLAICSS 318 (691)
T ss_pred eeeeeecceEEecceeeEEEEccc
Confidence 368889999988754444444443
No 124
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.83 E-value=9.6 Score=40.90 Aligned_cols=165 Identities=23% Similarity=0.289 Sum_probs=91.6
Q ss_pred CCCccccceeeeeecccC-CcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEE-EecCCC
Q 012294 163 KSTILTHFTAVDSLLALS-PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFV-SFESGR 238 (466)
Q Consensus 163 m~~~R~~~~~v~sl~~l~-~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYa-Gg~~g~ 238 (466)
|.+.+.+...+.++++.. +.+++.|+ +++. |-.+|..+.+=...-+- ...+.++++- ++.+++ +.+
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs--~D~t-----vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGS--DDGT-----VRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEec--CCCc-----EEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 344444444555555543 46888888 7664 44455554221111000 2222223333 234444 533
Q ss_pred cCCCeeEEEecCCCCc--cccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE
Q 012294 239 RNSNSIMVYDINSLKP--VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV 316 (466)
Q Consensus 239 ~~l~sVE~YDp~t~~~--~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~ 316 (466)
...|.+||..+++. +.++.. ..-.. +.+..++.+-...|++... .+.+..||.+.+.++-++
T Consensus 309 --d~~i~vwd~~~~~~~~~~~~~~------~~~~~-~~~~~~fsp~~~~ll~~~~-------d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 309 --DGTIRVWDLETGSKLCLKLLSG------AENSA-PVTSVQFSPNGKYLLSASL-------DRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred --CccEEEEECCCCceeeeecccC------CCCCC-ceeEEEECCCCcEEEEecC-------CCeEEEEEccCCcceeee
Confidence 56789999999652 233322 11111 2334444433333333322 448999999999999998
Q ss_pred cCCc---ccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 317 KDEV---DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 317 ~~~~---d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
.++. .|+-++.....+..|| .|..++.+++-|+.+.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~-sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 373 TGHSNLVRCIFSPTLSTGGKLIY-SGSEDGSVYVWDSSSGG 412 (456)
T ss_pred cccCCcceeEecccccCCCCeEE-EEeCCceEEEEeCCccc
Confidence 8883 2554555555666655 88899999999998855
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=90.73 E-value=1.9 Score=45.51 Aligned_cols=163 Identities=20% Similarity=0.354 Sum_probs=106.0
Q ss_pred eeeEEeeCCeEEEEeecCCCCcccceEEEEeCC--CCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294 276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR--SGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL 353 (466)
Q Consensus 276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr--t~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~ 353 (466)
-+.|++.+.-||++.|.| +.+-+||.| ++++.-....|.-.+--+++.+-+.-|.+-|+.+++|+.-|||.|
T Consensus 232 DV~~h~~h~~lF~sv~dd------~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL 305 (422)
T KOG0264|consen 232 DVAWHPLHEDLFGSVGDD------GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL 305 (422)
T ss_pred hhhccccchhhheeecCC------CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc
Confidence 346889999999999844 478899999 556556666665555566788899999999999999999999999
Q ss_pred CCCCCeEEeccCCcccccccccc-ceeEEEEECCEEEEE--eCCeEEEeEeeeecCCCCCCCC--Ccccceee-ccccCc
Q 012294 354 GDSSEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCG--KGGEIELWSEIVMGSRKSREGG--PLEERVFR-KNLMGR 427 (466)
Q Consensus 354 ~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~r-~~~~~~ 427 (466)
.. ++-. +.+ ...+ ..+.-.=+..-|+++ -++-|-||-=.-.+.+.+.|-+ +-.|-+|= +
T Consensus 306 ~~-----~lh~----~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg----- 370 (422)
T KOG0264|consen 306 NK-----PLHT----FEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG----- 370 (422)
T ss_pred cc-----Ccee----ccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEec-----
Confidence 83 1111 111 1111 222223345667776 5677889965422222111111 22444441 1
Q ss_pred cccCCCCceEEEeeecce--eEEEeeccceEEEeccC
Q 012294 428 VTDMGGSKITNLSFGGNK--MFVTRKGQQTVEVWQSS 462 (466)
Q Consensus 428 ~~~~~~~~i~~~~~gg~r--~f~~~~~~~~~~vw~~~ 462 (466)
-..++|++|+.-=++ +-++=.|.+...||+-+
T Consensus 371 ---GH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 371 ---GHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ---CcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 145689998887664 56778889999999865
No 126
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.61 E-value=26 Score=40.44 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=46.7
Q ss_pred eeCCeEEEEee-cCC--CCcccceEEEEeCCCCeeeeEEcC--C--------c--------ccccceeeecCCCceEEEE
Q 012294 281 SSYNLLLASGS-HSD--ISKVTGNIKFWDIRSGNVAWEVKD--E--------V--------DCFSDVTVSDNLSAIYKVG 339 (466)
Q Consensus 281 ~~~~~Lyv~Gg-~~g--~~~~~~sVe~yDprt~~~vW~~~~--~--------~--------d~~~~~~v~~~~~~i~~v~ 339 (466)
..+++||+.+. .++ .....+.|..||.+|++.+|.+.- | + ..-..++.|++.+.||.=-
T Consensus 314 V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt 393 (764)
T TIGR03074 314 VAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPM 393 (764)
T ss_pred EECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeC
Confidence 46888887432 111 112367899999999999999852 1 1 1114456777777777511
Q ss_pred -----------------EeeCceeEeeccccC
Q 012294 340 -----------------INSGEVSYMDLRKLG 354 (466)
Q Consensus 340 -----------------~~~g~l~~~dlr~~~ 354 (466)
-+.+.|..+|+++-+
T Consensus 394 Gn~~pd~~g~~r~~~~n~y~~slvALD~~TGk 425 (764)
T TIGR03074 394 GNQTPDQWGGDRTPADEKYSSSLVALDATTGK 425 (764)
T ss_pred CCccccccCCccccCcccccceEEEEeCCCCc
Confidence 145677778887754
No 127
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.41 E-value=1.1 Score=46.36 Aligned_cols=159 Identities=8% Similarity=0.064 Sum_probs=89.1
Q ss_pred cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCcee-EEEEECCeEEE-EecCCCcCCCeeEEEecCCCCcc
Q 012294 179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQ-AIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPV 255 (466)
Q Consensus 179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~-Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~ 255 (466)
=+|.+.-+.= +.+|.......+.||++.+-....+.+ +.... .-.+.+|.||. -.. +.. -.-...|...|
T Consensus 155 ~DGsl~~v~L-d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls-g~~-~~~~~~~~~~t---- 227 (342)
T PF06433_consen 155 GDGSLLTVTL-DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS-GDS-AKFGKPWSLLT---- 227 (342)
T ss_dssp TTSCEEEEEE-TSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET-TSS-EEEEEEEESS-----
T ss_pred cCCceEEEEE-CCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc-CCc-ccccCcccccC----
Confidence 3555555443 124554444557889988766555444 33222 12577888888 322 111 12233333322
Q ss_pred ccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccc----eEEEEeCCCCeee--eEEcCCcccccceeee
Q 012294 256 NEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTG----NIKFWDIRSGNVA--WEVKDEVDCFSDVTVS 329 (466)
Q Consensus 256 ~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~----sVe~yDprt~~~v--W~~~~~~d~~~~~~v~ 329 (466)
+-.+ +.+|.+..=--+..+...|+|||. .|.|..+.+. .|=.||+.+++.| |+...+. ..++|+
T Consensus 228 -~~e~-----~~~WrPGG~Q~~A~~~~~~rlyvL-Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~---~Si~Vs 297 (342)
T PF06433_consen 228 -DAEK-----ADGWRPGGWQLIAYHAASGRLYVL-MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPI---DSIAVS 297 (342)
T ss_dssp -HHHH-----HTTEEE-SSS-EEEETTTTEEEEE-EEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEE---SEEEEE
T ss_pred -cccc-----ccCcCCcceeeeeeccccCeEEEE-ecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCcc---ceEEEc
Confidence 1111 256766544445666789999985 5666543222 4777899999998 5553333 467888
Q ss_pred cCCC-ceEEEEEeeCceeEeeccccC
Q 012294 330 DNLS-AIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 330 ~~~~-~i~~v~~~~g~l~~~dlr~~~ 354 (466)
.+.. .||.+...+++|++.|.++.+
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT--
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 8776 667777788999999999844
No 128
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.65 E-value=21 Score=40.64 Aligned_cols=170 Identities=18% Similarity=0.238 Sum_probs=98.4
Q ss_pred EEcC----CceeeEecCC-CCCCCccccceeeeeecc-cCCcEEEEecccCCCc-eecccee--eeeCCCCceeecCCCC
Q 012294 147 VSHG----SKITSFDWSM-RKKSTILTHFTAVDSLLA-LSPGVAAAGATDFSGL-QVLDLEN--GYVKETLNWENVTRSS 217 (466)
Q Consensus 147 va~G----G~ve~YDW~~-a~m~~~R~~~~~v~sl~~-l~~~lYaiGG~~~~g~-~~l~svE--~ydp~t~~W~~va~Mr 217 (466)
+|+| |+.-+|+|.. .-....-.++..++++++ -+|++.|.|+ .||. ...++.- |+...+.. .
T Consensus 322 iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~--eDgKVKvWn~~SgfC~vTFteH-------t 392 (893)
T KOG0291|consen 322 IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA--EDGKVKVWNTQSGFCFVTFTEH-------T 392 (893)
T ss_pred EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc--CCCcEEEEeccCceEEEEeccC-------C
Confidence 3556 4567899987 222222233444555544 4567888888 5553 2222222 22222221 2
Q ss_pred CceeEEEE--ECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCc--ceeeEEeeC--CeEEEEee
Q 012294 218 STVQAIGS--SDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA--TKLRWVSSY--NLLLASGS 291 (466)
Q Consensus 218 ~~~~Ava~--l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~--~k~~~~~~~--~~Lyv~Gg 291 (466)
+++.|+.+ .++.|+-..- ..+|-.||... .+ |-=+...| .....+.++ |.|..+|.
T Consensus 393 s~Vt~v~f~~~g~~llssSL-----DGtVRAwDlkR-------Yr------NfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 393 SGVTAVQFTARGNVLLSSSL-----DGTVRAWDLKR-------YR------NFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred CceEEEEEEecCCEEEEeec-----CCeEEeeeecc-------cc------eeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 33333332 2233443222 45788899877 22 22333333 344455555 88888887
Q ss_pred cCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEee
Q 012294 292 HSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMD 349 (466)
Q Consensus 292 ~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~d 349 (466)
.|- =.|-+|+.+||+..=-.++|.-+...+.++.+++.|+ =++++-++-+=|
T Consensus 455 ~d~-----F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La-S~SWDkTVRiW~ 506 (893)
T KOG0291|consen 455 QDS-----FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA-SGSWDKTVRIWD 506 (893)
T ss_pred cce-----EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE-eccccceEEEEE
Confidence 443 2599999999998888889977888888999999865 566777754433
No 129
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=89.19 E-value=1.6 Score=49.42 Aligned_cols=116 Identities=17% Similarity=0.222 Sum_probs=78.8
Q ss_pred EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccc-cccCCceeecCcceeeEE--eeCCeEEEEeecCCCCcc-
Q 012294 223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNE-IYGTDIESAIPATKLRWV--SSYNLLLASGSHSDISKV- 298 (466)
Q Consensus 223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~-~~~~~~w~~~~~~k~~~~--~~~~~Lyv~Gg~~g~~~~- 298 (466)
+..++|..++|.. -.+|++||..+ |.-+ .|+..... .+.+.-+ -..|.+++++|.+|.-.+
T Consensus 456 vs~CGNF~~IG~S-----~G~Id~fNmQS-------Gi~r~sf~~~~ah---~~~V~gla~D~~n~~~vsa~~~Gilkfw 520 (910)
T KOG1539|consen 456 VSFCGNFVFIGYS-----KGTIDRFNMQS-------GIHRKSFGDSPAH---KGEVTGLAVDGTNRLLVSAGADGILKFW 520 (910)
T ss_pred EeccCceEEEecc-----CCeEEEEEccc-------CeeecccccCccc---cCceeEEEecCCCceEEEccCcceEEEE
Confidence 4556676776433 45899999999 4433 13211111 1222222 245666777776654211
Q ss_pred ----------------------------------cceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCc
Q 012294 299 ----------------------------------TGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGE 344 (466)
Q Consensus 299 ----------------------------------~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~ 344 (466)
.-+|.+||..|-++|.++.+|++++-|+++++|+..|- ....|+.
T Consensus 521 ~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWli-sasmD~t 599 (910)
T KOG1539|consen 521 DFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLI-SASMDST 599 (910)
T ss_pred ecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEE-EeecCCc
Confidence 12599999999999999999999999999999999965 5558899
Q ss_pred eeEeeccccC
Q 012294 345 VSYMDLRKLG 354 (466)
Q Consensus 345 l~~~dlr~~~ 354 (466)
+..=||=+..
T Consensus 600 Ir~wDlpt~~ 609 (910)
T KOG1539|consen 600 IRTWDLPTGT 609 (910)
T ss_pred EEEEeccCcc
Confidence 9888887754
No 130
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.12 E-value=4.3 Score=41.10 Aligned_cols=119 Identities=23% Similarity=0.387 Sum_probs=68.8
Q ss_pred EEEEec---CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEe
Q 012294 230 LFVSFE---SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWD 306 (466)
Q Consensus 230 IYaGg~---~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yD 306 (466)
|||||. .|.-....|=.||+.+ .+|..++.+ -....+.+.|+ .++.|||+|-..-..+...++-.||
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~-------~qW~~~g~~--i~G~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd 70 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDN-------SQWSSPGNG--ISGTVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYD 70 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCC-------CEeecCCCC--ceEEEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEe
Confidence 577543 2332367888999999 443333222 11113355666 6889999987443322345799999
Q ss_pred CCCCeeeeEEcCCcc------ccccee-eecCCCceEEEEE-eeCceeEeeccccCCCCCeEEecc
Q 012294 307 IRSGNVAWEVKDEVD------CFSDVT-VSDNLSAIYKVGI-NSGEVSYMDLRKLGDSSEWICLGD 364 (466)
Q Consensus 307 prt~~~vW~~~~~~d------~~~~~~-v~~~~~~i~~v~~-~~g~l~~~dlr~~~~~~~W~~~~~ 364 (466)
..+.+ |+....+. +..-+. ...+.+.+|..|. .+|.- .|-+-. ...|..+..
T Consensus 71 ~~~~~--w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~---~l~~~d-Gs~W~~i~~ 130 (281)
T PF12768_consen 71 FKNQT--WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGST---FLMKYD-GSSWSSIGS 130 (281)
T ss_pred cCCCe--eeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCc---eEEEEc-CCceEeccc
Confidence 99999 97765421 112222 2336777776666 56663 333444 456776665
No 131
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.09 E-value=29 Score=40.12 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=68.5
Q ss_pred EEEECCeEEEEec--CCC---cCCCeeEEEecCC----CC--cccc-----ccccccc---cCCceeecCcceeeEEeeC
Q 012294 223 IGSSDKHLFVSFE--SGR---RNSNSIMVYDINS----LK--PVNE-----IGQNEIY---GTDIESAIPATKLRWVSSY 283 (466)
Q Consensus 223 va~l~~~IYaGg~--~g~---~~l~sVE~YDp~t----~~--~~~~-----~~~~~~~---~~~~w~~~~~~k~~~~~~~ 283 (466)
-++.++.||+|+. +.. .....|-.||.+| |+ +..+ +.....| +++.|...+ .=+-.
T Consensus 312 P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s-----~D~~~ 386 (764)
T TIGR03074 312 PLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVAS-----YDEKL 386 (764)
T ss_pred CEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceE-----EcCCC
Confidence 4677999999542 111 1145789999999 21 0000 0000011 112222211 01245
Q ss_pred CeEEEEeecCCC-----------CcccceEEEEeCCCCeeeeEEcC-Cc-----cccccee---eec-CCC--ceEEEEE
Q 012294 284 NLLLASGSHSDI-----------SKVTGNIKFWDIRSGNVAWEVKD-EV-----DCFSDVT---VSD-NLS--AIYKVGI 340 (466)
Q Consensus 284 ~~Lyv~Gg~~g~-----------~~~~~sVe~yDprt~~~vW~~~~-~~-----d~~~~~~---v~~-~~~--~i~~v~~ 340 (466)
|++|+-.|...+ ..+.++|=..|++|++.+|..-. |. |.-+... +.. ++. .+-.++.
T Consensus 387 glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~ 466 (764)
T TIGR03074 387 GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT 466 (764)
T ss_pred CeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC
Confidence 788886653222 23677999999999999999854 21 1111111 222 332 1223666
Q ss_pred eeCceeEeeccccC
Q 012294 341 NSGEVSYMDLRKLG 354 (466)
Q Consensus 341 ~~g~l~~~dlr~~~ 354 (466)
++|.+|+.|-++-+
T Consensus 467 K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 467 KQGQIYVLDRRTGE 480 (764)
T ss_pred CCCEEEEEECCCCC
Confidence 99999999988744
No 132
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=88.99 E-value=4 Score=42.69 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=73.5
Q ss_pred CCceeEEEEECC-eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC
Q 012294 217 SSTVQAIGSSDK-HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI 295 (466)
Q Consensus 217 r~~~~Ava~l~~-~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~ 295 (466)
+..+.+|...+. .+|-+.. ..+|-+||.+|-+.+.++-....| .....++ ...|.++|+.
T Consensus 260 t~~Vs~V~w~d~~v~yS~Sw-----DHTIk~WDletg~~~~~~~~~ksl----------~~i~~~~-~~~Ll~~gss--- 320 (423)
T KOG0313|consen 260 TEPVSSVVWSDATVIYSVSW-----DHTIKVWDLETGGLKSTLTTNKSL----------NCISYSP-LSKLLASGSS--- 320 (423)
T ss_pred ccceeeEEEcCCCceEeecc-----cceEEEEEeecccceeeeecCcce----------eEeeccc-ccceeeecCC---
Confidence 444454444432 3554222 468999999993322222221110 0112223 5566777773
Q ss_pred CcccceEEEEeCCCC--eee-eEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 296 SKVTGNIKFWDIRSG--NVA-WEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 296 ~~~~~sVe~yDprt~--~~v-W~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
...+++||||++ ++| =++.+|..=...+.-++.+-.+|+=+++++.+-+=|+|+-.
T Consensus 321 ---dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 321 ---DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ---CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 336999999998 344 77778854556777788999999999999999999999854
No 133
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.98 E-value=2.3 Score=42.22 Aligned_cols=112 Identities=9% Similarity=0.054 Sum_probs=69.2
Q ss_pred cCCcEEEEecccCCCceeccceeeeeCCC----CceeecC-CC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEec
Q 012294 179 LSPGVAAAGATDFSGLQVLDLENGYVKET----LNWENVT-RS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDI 249 (466)
Q Consensus 179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t----~~W~~va-~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp 249 (466)
-+|.+...|| +.+ -.+.+..|+|.. ..|...+ .| |.+..+..--||.|++ ||.. ..+.|.|++
T Consensus 76 ~dG~ll~tGG--~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~----~~t~E~~P~ 147 (243)
T PF07250_consen 76 PDGRLLQTGG--DND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN----NPTYEFWPP 147 (243)
T ss_pred CCCCEEEeCC--CCc--cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC----CCcccccCC
Confidence 5789999999 432 223445566654 6798775 47 8888855555778999 8874 346777766
Q ss_pred CCCCccccccccccccCCceeecCcc---------eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE
Q 012294 250 NSLKPVNEIGQNEIYGTDIESAIPAT---------KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV 316 (466)
Q Consensus 250 ~t~~~~~~~~~~~~~~~~~w~~~~~~---------k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~ 316 (466)
... +.. ...|.....+ ...|+.-+|.||+.+.. .-.+||+.++++|-++
T Consensus 148 ~~~------~~~----~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--------~s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 148 KGP------GPG----PVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--------GSIIYDYKTNTVVRTL 205 (243)
T ss_pred ccC------CCC----ceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--------CcEEEeCCCCeEEeeC
Confidence 441 000 0111111111 23466678999988862 3578999999866554
No 134
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=88.93 E-value=2.1 Score=44.29 Aligned_cols=172 Identities=16% Similarity=0.329 Sum_probs=108.6
Q ss_pred CCeeEEEecCCCCccccc-cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 241 SNSIMVYDINSLKPVNEI-GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~-~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
.++|-+||..+.+....+ || ...+-++..++++.++|.. .++|+.||..+++++-+...|
T Consensus 216 DnTikiWD~n~~~c~~~L~GH-------------tGSVLCLqyd~rviisGSS------DsTvrvWDv~tge~l~tlihH 276 (499)
T KOG0281|consen 216 DNTIKIWDKNSLECLKILTGH-------------TGSVLCLQYDERVIVSGSS------DSTVRVWDVNTGEPLNTLIHH 276 (499)
T ss_pred cCceEEeccccHHHHHhhhcC-------------CCcEEeeeccceEEEecCC------CceEEEEeccCCchhhHHhhh
Confidence 789999999984322221 11 1233455678888888873 448999999999999999888
Q ss_pred cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEE--eCCeEE
Q 012294 320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG--KGGEIE 397 (466)
Q Consensus 320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~--~~~~~~ 397 (466)
.+....+ ...++. -+-|+++-.+.+=||-+-.. +.- ++.+.+ .+ ..+-++-+..++.++ .+-.|.
T Consensus 277 ceaVLhl--rf~ng~-mvtcSkDrsiaVWdm~sps~------it~-rrVLvG--Hr-AaVNvVdfd~kyIVsASgDRTik 343 (499)
T KOG0281|consen 277 CEAVLHL--RFSNGY-MVTCSKDRSIAVWDMASPTD------ITL-RRVLVG--HR-AAVNVVDFDDKYIVSASGDRTIK 343 (499)
T ss_pred cceeEEE--EEeCCE-EEEecCCceeEEEeccCchH------HHH-HHHHhh--hh-hheeeeccccceEEEecCCceEE
Confidence 6655554 444444 34788888888887766432 111 011221 12 445556666665555 556799
Q ss_pred EeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccCCC
Q 012294 398 LWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSSR 464 (466)
Q Consensus 398 v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~~ 464 (466)
||+-- . .-|=|-+-|+ .+| |.-+..- |||.|+=+-.+.|-+||-+..
T Consensus 344 vW~~s-----t---------~efvRtl~gH----kRG-IAClQYr-~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 344 VWSTS-----T---------CEFVRTLNGH----KRG-IACLQYR-DRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred EEecc-----c---------eeeehhhhcc----ccc-ceehhcc-CeEEEecCCCceEEEEecccc
Confidence 99863 1 0123333343 344 5555543 589999999999999997643
No 135
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.78 E-value=12 Score=38.46 Aligned_cols=164 Identities=19% Similarity=0.250 Sum_probs=89.1
Q ss_pred eeEEeeCCeEEEEeecCCCCcccceEEEEeCCC--CeeeeEEcC----CcccccceeeecCCCceEEEEEeeCceeEeec
Q 012294 277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRS--GNVAWEVKD----EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDL 350 (466)
Q Consensus 277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt--~~~vW~~~~----~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dl 350 (466)
+.+.+-+++||++..... ..+.|..|+... ++ .+... .+..=+.+++++++..||+..-.+|.+.+.+|
T Consensus 42 l~~~~~~~~LY~~~e~~~---~~g~v~~~~i~~~~g~--L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSG---DSGGVSSYRIDPDTGT--LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp EEE-TTSSEEEEEETTSS---TTTEEEEEEEETTTTE--EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCEEEEEEcccc---CCCCEEEEEECCCcce--eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 334457899999977431 234566666554 45 22221 24444678899999999988888999999999
Q ss_pred cccCC--C--CCeEEeccCCcccccccccc-ceeEEEEE--CCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceee
Q 012294 351 RKLGD--S--SEWICLGDGRKMVNGKRKEG-FGCKIECH--ANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFR 421 (466)
Q Consensus 351 r~~~~--~--~~W~~~~~~~~~m~~~~~~~-~~~~~~~~--~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r 421 (466)
..-+. . ..+..-..+. ... +..+ .-+.+... +++||+. ..|.|.+|.-- .. .+.|++
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~-~~~--rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~----~~---~~~l~~---- 182 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGP-NPD--RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID----DD---TGKLTP---- 182 (345)
T ss_dssp CTTSEEEEEEEEEESEEEES-STT--TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-----TT---S-TEEE----
T ss_pred cCCcccceeeeecccCCCCC-ccc--ccccccceeEEECCCCCEEEEEecCCCEEEEEEEe----CC---CceEEE----
Confidence 88653 1 0010000100 000 0111 22233333 5689988 45666666552 11 112332
Q ss_pred ccccCccccCCCCceEEEee--ecceeEEEeeccceEEEeccC
Q 012294 422 KNLMGRVTDMGGSKITNLSF--GGNKMFVTRKGQQTVEVWQSS 462 (466)
Q Consensus 422 ~~~~~~~~~~~~~~i~~~~~--gg~r~f~~~~~~~~~~vw~~~ 462 (466)
...+ +. ..|.-=.++.| -|.+|||+.+.-+.|.|++-.
T Consensus 183 ~~~~-~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 183 VDSI-KV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EEEE-EC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred eecc-cc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 1111 11 11222344444 678999999999999988754
No 136
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=88.49 E-value=0.83 Score=50.41 Aligned_cols=86 Identities=16% Similarity=0.219 Sum_probs=64.5
Q ss_pred ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccc
Q 012294 298 VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGF 377 (466)
Q Consensus 298 ~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~ 377 (466)
|..+||+||.++.+.-=.+.+|.|.+.+++-+++|..|--|| ++|.|.+-.=|+-+ .++-+++-..- -|+.
T Consensus 698 yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc-KDg~~rVy~Prs~e-----~pv~Eg~gpvg---tRgA 768 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC-KDGTLRVYEPRSRE-----QPVYEGKGPVG---TRGA 768 (1012)
T ss_pred ccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee-cCceEEEeCCCCCC-----CccccCCCCcc---Ccce
Confidence 566999999999987788999999999999999999976665 89999999888876 34555333211 2335
Q ss_pred eeEEEEECCEEEEEe
Q 012294 378 GCKIECHANQVFCGK 392 (466)
Q Consensus 378 ~~~~~~~~~~lf~~~ 392 (466)
...-||-+--|.|+.
T Consensus 769 Ri~wacdgr~viv~G 783 (1012)
T KOG1445|consen 769 RILWACDGRIVIVVG 783 (1012)
T ss_pred eEEEEecCcEEEEec
Confidence 566666666666553
No 137
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.39 E-value=16 Score=37.76 Aligned_cols=187 Identities=14% Similarity=0.121 Sum_probs=102.8
Q ss_pred cCCcEEEEecccCCCceeccceeeeeCCCCc--eeecCCC---CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCC
Q 012294 179 LSPGVAAAGATDFSGLQVLDLENGYVKETLN--WENVTRS---SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLK 253 (466)
Q Consensus 179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~--W~~va~M---r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~ 253 (466)
-++++|+-. .+| .+-.+|+.+.. |+....- ..+.. +...+|+||+|..++ .+-+||+.+
T Consensus 67 ~dg~v~~~~---~~G-----~i~A~d~~~g~~~W~~~~~~~~~~~~~~-~~~~~G~i~~g~~~g-----~~y~ld~~~-- 130 (370)
T COG1520 67 GDGTVYVGT---RDG-----NIFALNPDTGLVKWSYPLLGAVAQLSGP-ILGSDGKIYVGSWDG-----KLYALDAST-- 130 (370)
T ss_pred eCCeEEEec---CCC-----cEEEEeCCCCcEEecccCcCcceeccCc-eEEeCCeEEEecccc-----eEEEEECCC--
Confidence 788888862 344 34466777776 9654431 12333 445589999955544 688999988
Q ss_pred ccccccccccccCCceeecCcc--e--eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc--cccccee
Q 012294 254 PVNEIGQNEIYGTDIESAIPAT--K--LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV--DCFSDVT 327 (466)
Q Consensus 254 ~~~~~~~~~~~~~~~w~~~~~~--k--~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~--d~~~~~~ 327 (466)
|. ..|+.-.+. + -.-+..++.+|+.. ..+.+-+.|+.+++..|+..-+. +..-...
T Consensus 131 -----G~------~~W~~~~~~~~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~ 192 (370)
T COG1520 131 -----GT------LVWSRNVGGSPYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLSLSIYGS 192 (370)
T ss_pred -----Cc------EEEEEecCCCeEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccccccccC
Confidence 55 347765555 1 12334677777765 14578999999999999953321 0000011
Q ss_pred eecCCCceEEEEEe--eCceeEeeccccCCCCCeEE----eccC-----Ccc-ccccccccceeEEEEECCEEEEEeCC-
Q 012294 328 VSDNLSAIYKVGIN--SGEVSYMDLRKLGDSSEWIC----LGDG-----RKM-VNGKRKEGFGCKIECHANQVFCGKGG- 394 (466)
Q Consensus 328 v~~~~~~i~~v~~~--~g~l~~~dlr~~~~~~~W~~----~~~~-----~~~-m~~~~~~~~~~~~~~~~~~lf~~~~~- 394 (466)
.....+.+| ++.. ++.|+..|... + ...|.. -... .+. ....---+.+.-...+++++|+....
T Consensus 193 ~~~~~~~vy-~~~~~~~~~~~a~~~~~-G-~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~ 269 (370)
T COG1520 193 PAIASGTVY-VGSDGYDGILYALNAED-G-TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADT 269 (370)
T ss_pred ceeecceEE-EecCCCcceEEEEEccC-C-cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCC
Confidence 113444444 3434 55677776654 2 344541 1110 011 11100011333466777888887544
Q ss_pred eEEEeEee
Q 012294 395 EIELWSEI 402 (466)
Q Consensus 395 ~~~v~~~~ 402 (466)
.=++|+..
T Consensus 270 G~~~W~~~ 277 (370)
T COG1520 270 GELIWSFP 277 (370)
T ss_pred CceEEEEe
Confidence 44567765
No 138
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=88.38 E-value=0.68 Score=49.93 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=78.9
Q ss_pred CCceeEEEEECC--eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC-----cceeeEE-----eeC
Q 012294 217 SSTVQAIGSSDK--HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP-----ATKLRWV-----SSY 283 (466)
Q Consensus 217 r~~~~Ava~l~~--~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~-----~~k~~~~-----~~~ 283 (466)
|.++. .+...+ +||. ||.+|...+...-.|.-.. |+|+.+- |.++.++ ...
T Consensus 261 RgGHQ-MV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e---------------~~W~~iN~~t~~PG~RsCHRMVid~S~ 324 (723)
T KOG2437|consen 261 RGGHQ-MVIDVQTECVYLYGGWDGTQDLADFWAYSVKE---------------NQWTCINRDTEGPGARSCHRMVIDISR 324 (723)
T ss_pred cCcce-EEEeCCCcEEEEecCcccchhHHHHHhhcCCc---------------ceeEEeecCCCCCcchhhhhhhhhhhH
Confidence 66666 666555 8999 9999987788888888877 6676654 3343332 355
Q ss_pred CeEEEEeecCCCCcc-----cceEEEEeCCCCeeeeEEcCCccc-------c--cceeeecCCCceEEEEE--------e
Q 012294 284 NLLLASGSHSDISKV-----TGNIKFWDIRSGNVAWEVKDEVDC-------F--SDVTVSDNLSAIYKVGI--------N 341 (466)
Q Consensus 284 ~~Lyv~Gg~~g~~~~-----~~sVe~yDprt~~~vW~~~~~~d~-------~--~~~~v~~~~~~i~~v~~--------~ 341 (466)
.+||..|-+-+.+.. ...+=.||..+++ |..-.-.|. + ..|.|+.+..+||+-|+ +
T Consensus 325 ~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~--W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~ 402 (723)
T KOG2437|consen 325 RKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT--WMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQ 402 (723)
T ss_pred hHHhhhhhccccccccccccccceEEEecCCce--eEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCcc
Confidence 689999887665421 1134556666665 765422110 1 23566667777998887 4
Q ss_pred eCceeEeeccccCCCCCeEEecc
Q 012294 342 SGEVSYMDLRKLGDSSEWICLGD 364 (466)
Q Consensus 342 ~g~l~~~dlr~~~~~~~W~~~~~ 364 (466)
.+-||+-|+-. -.|.+++.
T Consensus 403 f~GLYaf~~~~----~~w~~l~e 421 (723)
T KOG2437|consen 403 FSGLYAFNCQC----QTWKLLRE 421 (723)
T ss_pred ccceEEEecCC----ccHHHHHH
Confidence 56688887643 34555544
No 139
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=88.36 E-value=3.4 Score=43.31 Aligned_cols=112 Identities=16% Similarity=0.114 Sum_probs=67.6
Q ss_pred eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC--CCCe
Q 012294 282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD--SSEW 359 (466)
Q Consensus 282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~--~~~W 359 (466)
..|++||+-- -.++|.+.|..+++++.+.....+.-+.+..++|+..+|+. ..+|.|.+.||.+.+- +
T Consensus 4 ~~~l~~V~~~------~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~-~rdg~vsviD~~~~~~v~~--- 73 (369)
T PF02239_consen 4 TGNLFYVVER------GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVA-NRDGTVSVIDLATGKVVAT--- 73 (369)
T ss_dssp GGGEEEEEEG------GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEE-ETTSEEEEEETTSSSEEEE---
T ss_pred CccEEEEEec------CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEE-cCCCeEEEEECCcccEEEE---
Confidence 3567777664 24589999999999998886555444556678999999965 6799999999999773 2
Q ss_pred EEeccCCccccccccccceeEEEEE-CCEEEEEeCCeEEEeEeeee
Q 012294 360 ICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCGKGGEIELWSEIVM 404 (466)
Q Consensus 360 ~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~~~~~~~v~~~~~~ 404 (466)
+..+...+.+.. .+.|.+.-+++| .++|-+.....+|+-..+..
T Consensus 74 i~~G~~~~~i~~-s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 74 IKVGGNPRGIAV-SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EE-SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred EecCCCcceEEE-cCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 333332232332 234455555554 45666666666766666543
No 140
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=87.58 E-value=11 Score=39.28 Aligned_cols=197 Identities=15% Similarity=0.263 Sum_probs=98.7
Q ss_pred eEEE--Eec----CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcce-eeEEeeCCeEEEEeecCCCCcccce
Q 012294 229 HLFV--SFE----SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATK-LRWVSSYNLLLASGSHSDISKVTGN 301 (466)
Q Consensus 229 ~IYa--Gg~----~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k-~~~~~~~~~Lyv~Gg~~g~~~~~~s 301 (466)
.+|+ .++ .|.+ ..-||.||+.|+++..||--.. ...-...+--. .+...-+..|||.-- - -..+
T Consensus 49 ~~y~a~T~~sR~~rG~R-tDvv~~~D~~TL~~~~EI~iP~---k~R~~~~~~~~~~~ls~dgk~~~V~N~--T---Pa~S 119 (342)
T PF06433_consen 49 TIYVAETFYSRGTRGER-TDVVEIWDTQTLSPTGEIEIPP---KPRAQVVPYKNMFALSADGKFLYVQNF--T---PATS 119 (342)
T ss_dssp EEEEEEEEEEETTEEEE-EEEEEEEETTTTEEEEEEEETT---S-B--BS--GGGEEE-TTSSEEEEEEE--S---SSEE
T ss_pred EEEEEEEEEeccccccc-eeEEEEEecCcCcccceEecCC---cchheecccccceEEccCCcEEEEEcc--C---CCCe
Confidence 4776 443 1333 7899999999999999776532 00011111111 122234455666543 1 2458
Q ss_pred EEEEeCCCCeeeeEEcCCc---------ccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccc
Q 012294 302 IKFWDIRSGNVAWEVKDEV---------DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGK 372 (466)
Q Consensus 302 Ve~yDprt~~~vW~~~~~~---------d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~ 372 (466)
|.+-|..++++|-|..-|+ +.|+ .++.||+.+...=..+|... .++-+ +--.+..+..+..
T Consensus 120 VtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~--~lC~DGsl~~v~Ld~~Gk~~---~~~t~-----~F~~~~dp~f~~~ 189 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFS--MLCGDGSLLTVTLDADGKEA---QKSTK-----VFDPDDDPLFEHP 189 (342)
T ss_dssp EEEEETTTTEEEEEEEGTSEEEEEEEETTEEE--EEETTSCEEEEEETSTSSEE---EEEEE-----ESSTTTS-B-S--
T ss_pred EEEEECCCCceeeeecCCCEEEEEecCCCceE--EEecCCceEEEEECCCCCEe---Eeecc-----ccCCCCccccccc
Confidence 9999999999998887664 2222 34445555333333445532 11111 1122222222210
Q ss_pred c-cc-cceeEEEEECCEEEEE--eCCeEEEeEee-eecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeE
Q 012294 373 R-KE-GFGCKIECHANQVFCG--KGGEIELWSEI-VMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMF 447 (466)
Q Consensus 373 ~-~~-~~~~~~~~~~~~lf~~--~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f 447 (466)
. .+ +..---..|.|+||.. .++.++. ..+ .+..+..++.+ +| .+|-.+..+.-..+|||
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~~~~~~~t~~e~~~~------Wr---------PGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKF-GKPWSLLTDAEKADG------WR---------PGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEE-EEEEESS-HHHHHTT------EE---------E-SSS-EEEETTTTEEE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccc-cCcccccCccccccC------cC---------CcceeeeeeccccCeEE
Confidence 0 01 1223336889999985 4555433 222 11111111112 56 36768888888999999
Q ss_pred EEeec-------cceEEEec
Q 012294 448 VTRKG-------QQTVEVWQ 460 (466)
Q Consensus 448 ~~~~~-------~~~~~vw~ 460 (466)
|+... ..+=|||.
T Consensus 254 vLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEE
T ss_pred EEecCCCCCCccCCceEEEE
Confidence 98641 23557775
No 141
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.58 E-value=9.2 Score=44.92 Aligned_cols=72 Identities=19% Similarity=0.340 Sum_probs=57.0
Q ss_pred eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC-CcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD-EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~-~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
+.|-.-.|.||+.|+ ..+|+.||...-.++-..-- ...+...++.+-.++.|+++|=.||.|-+-|.|+...
T Consensus 1171 ~dWqQ~~G~Ll~tGd-------~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGD-------VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred eehhhhCCeEEecCC-------eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc
Confidence 457778999999997 34899999999987755422 2555566666777788999999999999999999884
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=87.50 E-value=6.9 Score=41.92 Aligned_cols=191 Identities=13% Similarity=0.148 Sum_probs=101.6
Q ss_pred ccceeeeeecccCC-cEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEE-CC--eEEEEecCCCcC
Q 012294 168 THFTAVDSLLALSP-GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSS-DK--HLFVSFESGRRN 240 (466)
Q Consensus 168 ~~~~~v~sl~~l~~-~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l-~~--~IYaGg~~g~~~ 240 (466)
..++.++|+-+... .+..++| +++.-.+--+ |-++|. .+.+| ++-...++.. +| .|++++.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG--~d~~lrifqv---DGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r----- 278 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAG--LDGTLRIFQV---DGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR----- 278 (514)
T ss_pred cCcCCceEEEecCCCceEEEec--CCCcEEEEEe---cCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----
Confidence 33455666656554 4777888 7765332222 344444 45555 2222112222 33 3665433
Q ss_pred CCeeEEEecCC--CCccccccccccccCCceeecCccee-eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc
Q 012294 241 SNSIMVYDINS--LKPVNEIGQNEIYGTDIESAIPATKL-RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK 317 (466)
Q Consensus 241 l~sVE~YDp~t--~~~~~~~~~~~~~~~~~w~~~~~~k~-~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~ 317 (466)
-.-...||.++ .+.+..+.-++ -..|.. .+...++ ..++.|+ .++|-+.-..|++ |-.+
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e---------~~~~e~FeVShd~~-fia~~G~------~G~I~lLhakT~e--li~s 340 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVE---------EKSMERFEVSHDSN-FIAIAGN------NGHIHLLHAKTKE--LITS 340 (514)
T ss_pred ceEEEEeeccccccccccCCCCcc---------cchhheeEecCCCC-eEEEccc------CceEEeehhhhhh--hhhe
Confidence 45678999998 22233322211 011211 1222344 4556664 4478888888888 5433
Q ss_pred CC-cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEE-EECCEEEEE--eC
Q 012294 318 DE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIE-CHANQVFCG--KG 393 (466)
Q Consensus 318 ~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~-~~~~~lf~~--~~ 393 (466)
=+ .-..++++.+.++-.|+. ++-+|++|+.|||.......|+-=+. . +|-.++ ..++++||+ .-
T Consensus 341 ~KieG~v~~~~fsSdsk~l~~-~~~~GeV~v~nl~~~~~~~rf~D~G~----v-------~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 341 FKIEGVVSDFTFSSDSKELLA-SGGTGEVYVWNLRQNSCLHRFVDDGS----V-------HGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred eeeccEEeeEEEecCCcEEEE-EcCCceEEEEecCCcceEEEEeecCc----c-------ceeeeeecCCCceEEeccCc
Confidence 22 224588889989988884 55567999999999765444442221 0 444444 244556655 34
Q ss_pred CeEEEeE
Q 012294 394 GEIELWS 400 (466)
Q Consensus 394 ~~~~v~~ 400 (466)
|-|-++.
T Consensus 409 GiVNIYd 415 (514)
T KOG2055|consen 409 GIVNIYD 415 (514)
T ss_pred ceEEEec
Confidence 4566666
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.33 E-value=11 Score=40.09 Aligned_cols=154 Identities=17% Similarity=0.302 Sum_probs=95.4
Q ss_pred CCeeEEEecCC---CCccccccccc----------cccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeC
Q 012294 241 SNSIMVYDINS---LKPVNEIGQNE----------IYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDI 307 (466)
Q Consensus 241 l~sVE~YDp~t---~~~~~~~~~~~----------~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDp 307 (466)
...||+||+.- -.|.-.+|... .+++.+-+ -|...+.|-....-|.|+|+ ...+|-+||.
T Consensus 201 dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT-davl~Ls~n~~~~nVLaSgs------aD~TV~lWD~ 273 (463)
T KOG0270|consen 201 DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT-DAVLALSWNRNFRNVLASGS------ADKTVKLWDV 273 (463)
T ss_pred CceeEEeccccccccccceeechhhhhhhhhhcccccccccch-HHHHHHHhccccceeEEecC------CCceEEEEEc
Confidence 45899999986 44444555221 11110111 01123344445556778887 3558999999
Q ss_pred CCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC-CCCeEEeccCCccccccccccceeEEEEECC
Q 012294 308 RSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD-SSEWICLGDGRKMVNGKRKEGFGCKIECHAN 386 (466)
Q Consensus 308 rt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~-~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~ 386 (466)
.++++.-++..+++.+..+.--.....+---|++++.+.+.|+|..+. +-.|-..+.--|.... ..-++..-+..-+|
T Consensus 274 ~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~-~~se~~f~~~tddG 352 (463)
T KOG0270|consen 274 DTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWD-PHSENSFFVSTDDG 352 (463)
T ss_pred CCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEec-CCCceeEEEecCCc
Confidence 999999999888888888888888888777888999999999996443 3345555543333221 01114444444456
Q ss_pred EEEEE--eCCeEEEeEee
Q 012294 387 QVFCG--KGGEIELWSEI 402 (466)
Q Consensus 387 ~lf~~--~~~~~~v~~~~ 402 (466)
.|+-. |+..=-||+-.
T Consensus 353 ~v~~~D~R~~~~~vwt~~ 370 (463)
T KOG0270|consen 353 TVYYFDIRNPGKPVWTLK 370 (463)
T ss_pred eEEeeecCCCCCceeEEE
Confidence 66554 55555677664
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=87.04 E-value=1.1 Score=49.36 Aligned_cols=75 Identities=19% Similarity=0.351 Sum_probs=62.4
Q ss_pred CcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeE--EcCCcccccceeeecCCCceEEEEEeeCceeEeec
Q 012294 273 PATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWE--VKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDL 350 (466)
Q Consensus 273 ~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~--~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dl 350 (466)
|.+.+.|++.+-+|.-+.| ..++++||..+++++=. ..+|.-.+-.+...+.+..+|+-|+.||++.+.|+
T Consensus 102 AifDl~wapge~~lVsasG-------DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 102 AIFDLKWAPGESLLVSASG-------DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred eeEeeccCCCceeEEEccC-------CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 4577889985555555555 34899999999998865 88887677788889999999999999999999999
Q ss_pred cccC
Q 012294 351 RKLG 354 (466)
Q Consensus 351 r~~~ 354 (466)
|...
T Consensus 175 R~n~ 178 (720)
T KOG0321|consen 175 RCNG 178 (720)
T ss_pred eccc
Confidence 9876
No 145
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=86.27 E-value=7.1 Score=40.90 Aligned_cols=72 Identities=19% Similarity=0.416 Sum_probs=45.5
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCe-eeeEEcCC
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGN-VAWEVKDE 319 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~-~vW~~~~~ 319 (466)
..-+-.|||.+.+ ..|-+|..-|+..|-. .+.|.+.+-.++++|.||+ ++.+||.|+-+ ..-....|
T Consensus 321 dr~irl~DPR~~~--gs~v~~s~~gH~nwVs----svkwsp~~~~~~~S~S~D~------t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 321 DRHIRLWDPRTGD--GSVVSQSLIGHKNWVS----SVKWSPTNEFQLVSGSYDN------TVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred CCceeecCCCCCC--CceeEEeeecchhhhh----heecCCCCceEEEEEecCC------eEEEEEeccCCCcceeeccC
Confidence 3457899999921 1111222114444542 4678899999999999666 79999999887 44444444
Q ss_pred ccccc
Q 012294 320 VDCFS 324 (466)
Q Consensus 320 ~d~~~ 324 (466)
.|+..
T Consensus 389 ~DKvl 393 (423)
T KOG0313|consen 389 NDKVL 393 (423)
T ss_pred CceEE
Confidence 44443
No 146
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=85.83 E-value=0.34 Score=50.79 Aligned_cols=85 Identities=12% Similarity=0.178 Sum_probs=70.1
Q ss_pred CCCCCeEEEEECCeEEEEeHHHhhccCCCCccccccCC--Cc---eeE-------cCCchhHHHHhcccccCccccCCCC
Q 012294 19 SIDSNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--TH---RFI-------DRDPELFSILLSLLRTGNLPSKAKA 86 (466)
Q Consensus 19 ~~~~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--~~---~fi-------DRDp~~F~~IL~ylrtG~l~~~~~~ 86 (466)
...+.+|.|--=|...+.|+--|.+ . .||.+||++ .+ .+| ..|-..|...|.=||..++.+. -
T Consensus 66 q~enSDv~l~alg~eWrlHk~yL~Q-S--~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~--l 140 (488)
T KOG4682|consen 66 QGENSDVILEALGFEWRLHKPYLFQ-S--EYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIK--L 140 (488)
T ss_pred cCCCcceehhhccceeeeeeeeeec-c--HHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheecc--H
Confidence 3457899999999999999999987 3 499999997 21 222 3566889999999999888875 3
Q ss_pred cChHHHHHhhccccchhhHHhh
Q 012294 87 FDIEDLIEESKFYNIESLLINS 108 (466)
Q Consensus 87 ~~~~~Ll~EA~f~~l~~l~~~~ 108 (466)
.++..++..|.+++++.+++.|
T Consensus 141 ~dv~gvlAaA~~lqldgl~qrC 162 (488)
T KOG4682|consen 141 SDVVGVLAAACLLQLDGLIQRC 162 (488)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 5678899999999999999999
No 147
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=85.46 E-value=9.8 Score=40.40 Aligned_cols=119 Identities=15% Similarity=0.233 Sum_probs=86.5
Q ss_pred eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC-eeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG-NVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~-~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
+.+=+.++.|+|.|+.|+ +|.+||+|.= ++.=++.+|.|-+..+.-++.+..|++-.+.++.|-+=||.+.+.
T Consensus 278 ~~fnp~~~~ilAT~S~D~------tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADK------TVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred EEeCCCCCceEEeccCCC------cEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 345568899999998544 8999999985 555777788888899999999999999999999999999999986
Q ss_pred CCCeEEeccCCccccccccccceeEEE-----EECCEEEEE--eCCeEEEeEee
Q 012294 356 SSEWICLGDGRKMVNGKRKEGFGCKIE-----CHANQVFCG--KGGEIELWSEI 402 (466)
Q Consensus 356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~-----~~~~~lf~~--~~~~~~v~~~~ 402 (466)
+-+|..=.++++-+-= .-+|...+|. -..-|+.|| .+..+.||.=.
T Consensus 352 eq~~eda~dgppEllF-~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 352 EQSPEDAEDGPPELLF-IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccChhhhccCCcceeE-EecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 4445544444443110 0123444443 234677776 67789999765
No 148
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=84.54 E-value=1.4 Score=47.59 Aligned_cols=158 Identities=13% Similarity=0.161 Sum_probs=92.5
Q ss_pred CccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC------CCceeEEEEE--CCeEEE-Eec
Q 012294 165 TILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS------SSTVQAIGSS--DKHLFV-SFE 235 (466)
Q Consensus 165 ~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M------r~~~~Ava~l--~~~IYa-Gg~ 235 (466)
..|.+|..|-. .-+.+||.-|| .+|...|...-.|....|.|+.+..= |+.+- .+.- ..+||. |-+
T Consensus 259 ~~RgGHQMV~~--~~~~CiYLYGG--WdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR-MVid~S~~KLYLlG~Y 333 (723)
T KOG2437|consen 259 GMRGGHQMVID--VQTECVYLYGG--WDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR-MVIDISRRKLYLLGRY 333 (723)
T ss_pred cccCcceEEEe--CCCcEEEEecC--cccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh-hhhhhhHhHHhhhhhc
Confidence 45777766641 12238999999 99999999999999999999977532 43332 3322 337999 765
Q ss_pred CCCcC------CCeeEEEecCCCCccccccccccccCCceeecC--------cc-----eeeEEeeCCeEEEEeecCCCC
Q 012294 236 SGRRN------SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP--------AT-----KLRWVSSYNLLLASGSHSDIS 296 (466)
Q Consensus 236 ~g~~~------l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~--------~~-----k~~~~~~~~~Lyv~Gg~~g~~ 296 (466)
-+.+. -..+-+||..| +.|..+. |. .+.+..-.++|||.||..-..
T Consensus 334 ~~sS~r~~~s~RsDfW~FDi~~---------------~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~ 398 (723)
T KOG2437|consen 334 LDSSVRNSKSLRSDFWRFDIDT---------------NTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTC 398 (723)
T ss_pred cccccccccccccceEEEecCC---------------ceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccC
Confidence 33221 34577888877 3344322 11 122334566799999954332
Q ss_pred c--ccceEEEEeCCCCeeeeEEcCC---------cccccc----eeeecCCCceEEEEEeeCc
Q 012294 297 K--VTGNIKFWDIRSGNVAWEVKDE---------VDCFSD----VTVSDNLSAIYKVGINSGE 344 (466)
Q Consensus 297 ~--~~~sVe~yDprt~~~vW~~~~~---------~d~~~~----~~v~~~~~~i~~v~~~~g~ 344 (466)
. ..+-...||- +...|+.... .+...+ |-..+++..+|.-+++.-+
T Consensus 399 ~e~~f~GLYaf~~--~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 399 NEPQFSGLYAFNC--QCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred CCccccceEEEec--CCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 1 1122455554 4444876432 111111 1234588899988875443
No 149
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=84.54 E-value=42 Score=35.28 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=54.2
Q ss_pred ceeeeeCCCCcee--ecCCCCCceeEEEEE--CCeEEEEecCCCcCCCeeEEEecCCCCcccccc-ccccccCCceeecC
Q 012294 199 LENGYVKETLNWE--NVTRSSSTVQAIGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIG-QNEIYGTDIESAIP 273 (466)
Q Consensus 199 svE~ydp~t~~W~--~va~Mr~~~~Ava~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~-~~~~~~~~~w~~~~ 273 (466)
.|.|||.+.|+-. ...-| +++-++... .+.|+.|+. ...+-+||..|-..|..|. |.. +
T Consensus 216 ~VKCwDLe~nkvIR~YhGHl-S~V~~L~lhPTldvl~t~gr-----Dst~RvWDiRtr~~V~~l~GH~~----------~ 279 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHL-SGVYCLDLHPTLDVLVTGGR-----DSTIRVWDIRTRASVHVLSGHTN----------P 279 (460)
T ss_pred eeEEEechhhhhHHHhcccc-ceeEEEeccccceeEEecCC-----cceEEEeeecccceEEEecCCCC----------c
Confidence 5889999988732 11122 222212222 233444543 4678999999944444443 211 1
Q ss_pred cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 274 ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 274 ~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
...+..-+.++.+|. |.| .++|++||.+.|+..=+...|
T Consensus 280 V~~V~~~~~dpqvit-~S~------D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 280 VASVMCQPTDPQVIT-GSH------DSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred ceeEEeecCCCceEE-ecC------CceEEEeeeccCceeEeeecc
Confidence 223333345666654 333 458999999999855555444
No 150
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=84.31 E-value=3.8 Score=43.21 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=46.5
Q ss_pred cceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 299 TGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 299 ~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
...|+.||.|+..++-+.-..+ .+..++++.++..|- .|+-++.|=++|||..+
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKE 374 (459)
T ss_pred ccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEe-eecCCCceeeeeccccc
Confidence 4579999999999888875555 778888999999877 67999999999999988
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=83.97 E-value=2.1 Score=44.63 Aligned_cols=110 Identities=26% Similarity=0.398 Sum_probs=68.0
Q ss_pred eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC---eeeeEEcCCcccccceeeec---CCCceEEEEEeeCceeEee
Q 012294 276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG---NVAWEVKDEVDCFSDVTVSD---NLSAIYKVGINSGEVSYMD 349 (466)
Q Consensus 276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~---~~vW~~~~~~d~~~~~~v~~---~~~~i~~v~~~~g~l~~~d 349 (466)
-++|.+...-+|++++-|| +|+.||.|++ .+|=. +.|. +|+.|-. .-. +.+-|+-+|+|.+-|
T Consensus 262 DLqWSptE~~vfaScS~Dg------sIrIWDiRs~~~~~~~~~-kAh~---sDVNVISWnr~~~-lLasG~DdGt~~iwD 330 (440)
T KOG0302|consen 262 DLQWSPTEDGVFASCSCDG------SIRIWDIRSGPKKAAVST-KAHN---SDVNVISWNRREP-LLASGGDDGTLSIWD 330 (440)
T ss_pred hhccCCccCceEEeeecCc------eEEEEEecCCCccceeEe-eccC---CceeeEEccCCcc-eeeecCCCceEEEEE
Confidence 4677788899999998544 8999999999 44433 5566 6766654 222 556788999999999
Q ss_pred ccccCCCCCeEEeccCCccccc-cccccceeEEEEECCEEEEEe--CCeEEEeEeeee
Q 012294 350 LRKLGDSSEWICLGDGRKMVNG-KRKEGFGCKIECHANQVFCGK--GGEIELWSEIVM 404 (466)
Q Consensus 350 lr~~~~~~~W~~~~~~~~~m~~-~~~~~~~~~~~~~~~~lf~~~--~~~~~v~~~~~~ 404 (466)
||.... . .+++. .+. |.+= ....-+-+..-+|++- ++.|.+|-=-.+
T Consensus 331 LR~~~~-~--~pVA~----fk~Hk~pI-tsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 331 LRQFKS-G--QPVAT----FKYHKAPI-TSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred hhhccC-C--Cccee----EEeccCCe-eEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999873 2 12222 110 0011 2222233345556553 456888976544
No 152
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=83.96 E-value=40 Score=32.13 Aligned_cols=98 Identities=16% Similarity=0.283 Sum_probs=58.3
Q ss_pred cceeeeeCCCCceeecCCC-----CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCcee-
Q 012294 198 DLENGYVKETLNWENVTRS-----SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIES- 270 (466)
Q Consensus 198 ~svE~ydp~t~~W~~va~M-----r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~- 270 (466)
..+|.|+..+++|..+.+. .... .+.++|.||= ...........|..||..+ ..|.
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~--~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~---------------E~f~~ 132 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHPLKSR--GVCINGVLYYLAYTLKTNPDYFIVSFDVSS---------------ERFKE 132 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCccccCC--eEEECCEEEEEEEECCCCCcEEEEEEEccc---------------ceEee
Confidence 4789999999999987643 1122 3578998888 4332211123899999998 3344
Q ss_pred ecC-cc-------eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCC-CeeeeEE
Q 012294 271 AIP-AT-------KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRS-GNVAWEV 316 (466)
Q Consensus 271 ~~~-~~-------k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt-~~~vW~~ 316 (466)
.++ |. ......++|.|.++...... ..+++|=-+. ++..|+-
T Consensus 133 ~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~----~~~~IWvl~d~~~~~W~k 183 (230)
T TIGR01640 133 FIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDT----NNFDLWVLNDAGKQEWSK 183 (230)
T ss_pred eeecCccccccccceEEEEECCEEEEEEecCCC----CcEEEEEECCCCCCceeE
Confidence 122 11 12344578888887764331 2488886552 2223763
No 153
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=83.94 E-value=30 Score=35.43 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=40.6
Q ss_pred ccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEE--eeCceeEeecc
Q 012294 298 VTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI--NSGEVSYMDLR 351 (466)
Q Consensus 298 ~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~--~~g~l~~~dlr 351 (466)
..+.|..||||.|.+--..++|.|.+..+.++++|+. +.+ .+-.|-+.|.|
T Consensus 194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~---llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF---LLSNSMDNTVRVWDVR 246 (338)
T ss_pred ccCceeeeccccCcceEEeecccCceeeEEeccCCCc---cccccccceEEEEEec
Confidence 4567999999999999999999999999999999998 444 34444444444
No 154
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.22 E-value=13 Score=40.60 Aligned_cols=168 Identities=15% Similarity=0.174 Sum_probs=103.0
Q ss_pred eeeEecCC-CCCCCccccc--eeeeeeccc-CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC----CCceeEEE
Q 012294 153 ITSFDWSM-RKKSTILTHF--TAVDSLLAL-SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS----SSTVQAIG 224 (466)
Q Consensus 153 ve~YDW~~-a~m~~~R~~~--~~v~sl~~l-~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M----r~~~~Ava 224 (466)
...|-|.. ...-+.-..+ ..++|+.+. +|...|||- .+| .++.||..+.+ .+..| ...++ +-
T Consensus 197 ~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~--~~g-----~v~iwD~~~~k--~~~~~~~~h~~rvg-~l 266 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGT--SDG-----TVQIWDVKEQK--KTRTLRGSHASRVG-SL 266 (484)
T ss_pred ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEee--cCC-----eEEEEehhhcc--ccccccCCcCceeE-EE
Confidence 34577877 3332222222 334454443 477888887 555 57888888776 45555 23344 33
Q ss_pred EECCeEEE-EecCCCcCCCeeEEEecCCCCcccc-cc-ccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccce
Q 012294 225 SSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNE-IG-QNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGN 301 (466)
Q Consensus 225 ~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~-~~-~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~s 301 (466)
.-++.+.. |..+ ..|-.+|..+-+...+ +. |..- .-++.|. .++..+|+||. .+.
T Consensus 267 aW~~~~lssGsr~-----~~I~~~dvR~~~~~~~~~~~H~qe----------VCgLkws-~d~~~lASGgn------DN~ 324 (484)
T KOG0305|consen 267 AWNSSVLSSGSRD-----GKILNHDVRISQHVVSTLQGHRQE----------VCGLKWS-PDGNQLASGGN------DNV 324 (484)
T ss_pred eccCceEEEecCC-----CcEEEEEEecchhhhhhhhcccce----------eeeeEEC-CCCCeeccCCC------ccc
Confidence 44556666 5443 4577888877333322 22 1110 1233444 47888899984 447
Q ss_pred EEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEE--eeCceeEeeccc
Q 012294 302 IKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI--NSGEVSYMDLRK 352 (466)
Q Consensus 302 Ve~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~--~~g~l~~~dlr~ 352 (466)
|-.||-.+..+.-...+|....-.++-++-...|-++|+ .++++-|=|-..
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence 999999888877777777644456677888888888887 788877766664
No 155
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=83.19 E-value=38 Score=39.62 Aligned_cols=192 Identities=15% Similarity=0.182 Sum_probs=103.1
Q ss_pred eeecCCcEEEEcCCce-----------eeEe----cCC---CCCCCccccceeeeeeccc-CCcEEEEecccCCCceecc
Q 012294 138 ATTNYGTLHVSHGSKI-----------TSFD----WSM---RKKSTILTHFTAVDSLLAL-SPGVAAAGATDFSGLQVLD 198 (466)
Q Consensus 138 ~a~~~g~lyva~GG~v-----------e~YD----W~~---a~m~~~R~~~~~v~sl~~l-~~~lYaiGG~~~~g~~~l~ 198 (466)
.+.+++.-+ |.||++ ..++ |.. .+..+.+.+.+.++|+.+- +|+.+|.|+ .+.. -
T Consensus 20 dv~pdg~~~-aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS--DD~~---v 93 (942)
T KOG0973|consen 20 DVHPDGVKF-ATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS--DDRL---V 93 (942)
T ss_pred EecCCceeE-ecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc--Ccce---E
Confidence 456677777 456532 1132 544 2334567777888887664 566777777 4432 1
Q ss_pred ceeee--------------eCCCCceeecCCCCCceeEEEE----ECCeEEE-EecCCCcCCCeeEEEecCCCCccccc-
Q 012294 199 LENGY--------------VKETLNWENVTRSSSTVQAIGS----SDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEI- 258 (466)
Q Consensus 199 svE~y--------------dp~t~~W~~va~Mr~~~~Ava~----l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~- 258 (466)
.+-.| .+..-+|..+..+|..-+-|.. -++.+.| ++ ..++|-.||-.|...+..|
T Consensus 94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s-----~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS-----LDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec-----ccceEEEEccccceeeeeee
Confidence 11122 2333355555444211111111 1355666 33 2689999999994333332
Q ss_pred cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC------cccccceeeecCC
Q 012294 259 GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE------VDCFSDVTVSDNL 332 (466)
Q Consensus 259 ~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~------~d~~~~~~v~~~~ 332 (466)
+|+.--.|-.|- + -|.-+|+=. ...+|..|+.-+=.++....+| ..-|.++.-++||
T Consensus 169 ~H~s~VKGvs~D----------P-~Gky~ASqs------dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG 231 (942)
T KOG0973|consen 169 GHQSLVKGVSWD----------P-IGKYFASQS------DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG 231 (942)
T ss_pred cccccccceEEC----------C-ccCeeeeec------CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc
Confidence 222211223333 2 233333333 3558999983332355555566 5678888999999
Q ss_pred CceEEEEEeeCceeEeeccccCCCCCeE
Q 012294 333 SAIYKVGINSGEVSYMDLRKLGDSSEWI 360 (466)
Q Consensus 333 ~~i~~v~~~~g~l~~~dlr~~~~~~~W~ 360 (466)
..|-..-+.+|-..-+ --++ .+.|.
T Consensus 232 ~~las~nA~n~~~~~~--~Iie-R~tWk 256 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTI--AIIE-RGTWK 256 (942)
T ss_pred CeecchhhccCCccee--EEEe-cCCce
Confidence 9987777766654333 3445 36776
No 156
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=82.97 E-value=26 Score=35.88 Aligned_cols=139 Identities=21% Similarity=0.329 Sum_probs=82.4
Q ss_pred EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCC
Q 012294 279 WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSE 358 (466)
Q Consensus 279 ~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~ 358 (466)
..+..+.|.|+. +|| ++++||..+++.-=++ .++-+..+.+..+ .+.+| +|+-+|+|-..||..-..
T Consensus 21 f~~~~~~LLvss-WDg------slrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~-~G~~dg~vr~~Dln~~~~--- 87 (323)
T KOG1036|consen 21 FSPSSSDLLVSS-WDG------SLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIV-TGGLDGQVRRYDLNTGNE--- 87 (323)
T ss_pred EcCcCCcEEEEe-ccC------cEEEEeccchhhhhhe-ecCCceeeeeccC-CceEE-EeccCceEEEEEecCCcc---
Confidence 336677777776 666 7999999998532222 1233445555555 34445 788999999999987552
Q ss_pred eEEeccCCccccccccccceeEEEEE-CCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCce
Q 012294 359 WICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKI 436 (466)
Q Consensus 359 W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i 436 (466)
.-++... ++..|.--+| .|+|.+. =+..|++|..- .+ ...... ..+.+|
T Consensus 88 -~~igth~--------~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R----~~-----~~~~~~-----------d~~kkV 138 (323)
T KOG1036|consen 88 -DQIGTHD--------EGIRCIEYSYEVGCVISGSWDKTIKFWDPR----NK-----VVVGTF-----------DQGKKV 138 (323)
T ss_pred -eeeccCC--------CceEEEEeeccCCeEEEcccCccEEEEecc----cc-----cccccc-----------ccCceE
Confidence 2233311 1122222222 3444443 57889999874 12 111111 234489
Q ss_pred EEEeeecceeEEEeeccceEEEec
Q 012294 437 TNLSFGGNKMFVTRKGQQTVEVWQ 460 (466)
Q Consensus 437 ~~~~~gg~r~f~~~~~~~~~~vw~ 460 (466)
-.++.+||||-|.=+|.+ |-+|+
T Consensus 139 y~~~v~g~~LvVg~~~r~-v~iyD 161 (323)
T KOG1036|consen 139 YCMDVSGNRLVVGTSDRK-VLIYD 161 (323)
T ss_pred EEEeccCCEEEEeecCce-EEEEE
Confidence 999999999999655544 33554
No 157
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.81 E-value=2.6 Score=41.79 Aligned_cols=91 Identities=16% Similarity=0.240 Sum_probs=57.2
Q ss_pred eeeeeCCCCceeecCCC---CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCc-
Q 012294 200 ENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA- 274 (466)
Q Consensus 200 vE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~- 274 (466)
.-.|||.+++++.+.-. -++.+ +..-||.+.. ||+.. . .+.+-.|+|.+ .. +...|...+.
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg-~~L~dG~ll~tGG~~~-G-~~~ir~~~p~~-------~~----~~~~w~e~~~~ 113 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGG-AFLPDGRLLQTGGDND-G-NKAIRIFTPCT-------SD----GTCDWTESPND 113 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCc-CCCCCCCEEEeCCCCc-c-ccceEEEecCC-------CC----CCCCceECccc
Confidence 34689999999877654 22333 3334667666 88743 2 56888999876 11 1134655442
Q ss_pred cee-eEEe-----eCCeEEEEeecCCCCcccceEEEEeCCC
Q 012294 275 TKL-RWVS-----SYNLLLASGSHSDISKVTGNIKFWDIRS 309 (466)
Q Consensus 275 ~k~-~~~~-----~~~~Lyv~Gg~~g~~~~~~sVe~yDprt 309 (466)
|.. +|.+ .+|.++|+||... .+.|.|+++.
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~ 149 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNN-----PTYEFWPPKG 149 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCC-----CcccccCCcc
Confidence 322 3543 6899999999663 3589887743
No 158
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=81.79 E-value=14 Score=37.22 Aligned_cols=74 Identities=20% Similarity=0.354 Sum_probs=57.7
Q ss_pred cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC-eeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294 274 ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG-NVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 274 ~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~-~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
+++..|-+++..|.+ |.. .++|..||.++| +.|-+-.+|...+.|+-.+++... |.-++++-+-...|.++
T Consensus 150 it~a~Wg~l~~~ii~-Ghe------~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 150 ITSALWGPLGETIIA-GHE------DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRT 221 (327)
T ss_pred eeeeeecccCCEEEE-ecC------CCcEEEEEcccCceeeechhhhccccccccccCCcce-EEecccCccceeeeccc
Confidence 455668788777654 332 457999999998 666666777778888888888765 87888999988999999
Q ss_pred cCC
Q 012294 353 LGD 355 (466)
Q Consensus 353 ~~~ 355 (466)
|+.
T Consensus 222 l~v 224 (327)
T KOG0643|consen 222 LEV 224 (327)
T ss_pred eee
Confidence 996
No 159
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=81.66 E-value=4.3 Score=41.23 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=58.0
Q ss_pred cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCee--e-eEEcCCcccccceeeecCCCceEEEEEeeCceeEeec
Q 012294 274 ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNV--A-WEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDL 350 (466)
Q Consensus 274 ~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~--v-W~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dl 350 (466)
-+..-|-.++..+..+.. ..-++-.||.+++.. | =..+.|-...-|++....+..+|+-++.+|.+-|.||
T Consensus 153 lTSFDWne~dp~~igtSS------iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSS------IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred ccccccccCCcceeEeec------ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 345667777776665554 344789999999732 3 3455664455888999999999999999999999999
Q ss_pred cccCC
Q 012294 351 RKLGD 355 (466)
Q Consensus 351 r~~~~ 355 (466)
|+++.
T Consensus 227 R~leH 231 (364)
T KOG0290|consen 227 RSLEH 231 (364)
T ss_pred ccccc
Confidence 99995
No 160
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=81.48 E-value=2.5 Score=29.35 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=23.4
Q ss_pred CeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294 310 GNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 310 ~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
++++|+..-+..-.+.+++ .+..|| |+..+|.||..|.++
T Consensus 1 G~~~W~~~~~~~~~~~~~v--~~g~vy-v~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAV--AGGRVY-VGTGDGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS---S--EE--CTSEEE-EE-TTSEEEEEETT-
T ss_pred CceeEEEECCCCcCcCCEE--ECCEEE-EEcCCCEEEEEeCCC
Confidence 4567888766534444444 567788 777899999999763
No 161
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.39 E-value=7 Score=44.24 Aligned_cols=136 Identities=22% Similarity=0.339 Sum_probs=91.3
Q ss_pred CCeeEEEecCCCCccccccccc--cccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC
Q 012294 241 SNSIMVYDINSLKPVNEIGQNE--IYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD 318 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~--~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~ 318 (466)
...|-+||...- +..+. +|... ..++.++.|+....-|.++|+.|| +|.+||-|.++-+=++..
T Consensus 109 nG~i~vWdlnk~-----~rnk~l~~f~EH---~Rs~~~ldfh~tep~iliSGSQDg------~vK~~DlR~~~S~~t~~~ 174 (839)
T KOG0269|consen 109 NGVISVWDLNKS-----IRNKLLTVFNEH---ERSANKLDFHSTEPNILISGSQDG------TVKCWDLRSKKSKSTFRS 174 (839)
T ss_pred CCcEEEEecCcc-----ccchhhhHhhhh---ccceeeeeeccCCccEEEecCCCc------eEEEEeeecccccccccc
Confidence 557788888771 12222 23111 135678999999999999999666 799999999975555555
Q ss_pred CcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEE---eCCe
Q 012294 319 EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG---KGGE 395 (466)
Q Consensus 319 ~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~---~~~~ 395 (466)
..++.=|+..++.-.-.|.-+--+|.|-.-|||.-. .|+. +.. .-.|-...+--|=+|.|.+ |++-
T Consensus 175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---r~~~-------k~~-AH~GpV~c~nwhPnr~~lATGGRDK~ 243 (839)
T KOG0269|consen 175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---RCEK-------KLT-AHNGPVLCLNWHPNREWLATGGRDKM 243 (839)
T ss_pred cchhhhceeeccCCCceEEEecCCceEEEeeccCch---hHHH-------Hhh-cccCceEEEeecCCCceeeecCCCcc
Confidence 677778999999888899888899999999999844 2221 110 0112222233344666665 6667
Q ss_pred EEEeEe
Q 012294 396 IELWSE 401 (466)
Q Consensus 396 ~~v~~~ 401 (466)
|-||--
T Consensus 244 vkiWd~ 249 (839)
T KOG0269|consen 244 VKIWDM 249 (839)
T ss_pred EEEEec
Confidence 888854
No 162
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.24 E-value=64 Score=33.62 Aligned_cols=199 Identities=13% Similarity=0.162 Sum_probs=104.5
Q ss_pred CCeEEE-Eec-CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeC-CeEEEEeecCCC---Ccccc
Q 012294 227 DKHLFV-SFE-SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSY-NLLLASGSHSDI---SKVTG 300 (466)
Q Consensus 227 ~~~IYa-Gg~-~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~-~~Lyv~Gg~~g~---~~~~~ 300 (466)
++...| +-+ .|.. ...+-++|.+|-+.+.. .-.......+.|+.-+ .++|..-..... .++..
T Consensus 134 dg~~la~~~s~~G~e-~~~l~v~Dl~tg~~l~d----------~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSE-WYTLRVFDLETGKFLPD----------GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp TSSEEEEEEEETTSS-EEEEEEEETTTTEEEEE----------EEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred CCCEEEEEecCCCCc-eEEEEEEECCCCcCcCC----------cccccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 344434 433 2443 67899999999222211 1011112227787643 344444332211 12344
Q ss_pred eEEEEeCCCC----eeeeEEcCCcccccceeeecCCCceEEEEE--ee-CceeEeeccccC-CCCCeEEeccCCcccccc
Q 012294 301 NIKFWDIRSG----NVAWEVKDEVDCFSDVTVSDNLSAIYKVGI--NS-GEVSYMDLRKLG-DSSEWICLGDGRKMVNGK 372 (466)
Q Consensus 301 sVe~yDprt~----~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~--~~-g~l~~~dlr~~~-~~~~W~~~~~~~~~m~~~ 372 (466)
.|.+|..-++ .+|++-.++.-.+.++..+.++..|+.-.. .+ -++|++|+.... ....|.++.++.
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~------ 276 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE------ 276 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS------
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC------
Confidence 6888886555 578877655323567888999998884343 33 468999998851 146788887622
Q ss_pred ccccceeEEEEECCEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeec
Q 012294 373 RKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKG 452 (466)
Q Consensus 373 ~~~~~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~ 452 (466)
.+...-+..+++.+|+..+++-+=+.=+...-.. ....-.+.-++ +....-.|.+++.-+++|++.-.+
T Consensus 277 --~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~------~~~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 277 --DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLAD------PSPAEWWTVLI---PEDEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp --SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTS------TSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEE
T ss_pred --CceEEEEEccCCEEEEeeCCCCCCcEEEEecccc------cccccceeEEc---CCCCceeEEEEEEECCEEEEEEEE
Confidence 2255556667999998877443221111110011 01001111222 223455899999999999987654
Q ss_pred c
Q 012294 453 Q 453 (466)
Q Consensus 453 ~ 453 (466)
.
T Consensus 346 ~ 346 (414)
T PF02897_consen 346 N 346 (414)
T ss_dssp T
T ss_pred C
Confidence 3
No 163
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=81.01 E-value=54 Score=31.47 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=83.7
Q ss_pred cCCcEEEEcCCceeeEe-----cCC-CCC-----CCccccceeeeeecccCCcEEEEecccCCCceec--cceeeeeCCC
Q 012294 141 NYGTLHVSHGSKITSFD-----WSM-RKK-----STILTHFTAVDSLLALSPGVAAAGATDFSGLQVL--DLENGYVKET 207 (466)
Q Consensus 141 ~~g~lyva~GG~ve~YD-----W~~-a~m-----~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l--~svE~ydp~t 207 (466)
.++.+|++..+....+| +.. ... ...+.+-.++. -+|.+|+---. ....... ..+-++++.
T Consensus 50 ~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd----~~G~ly~t~~~-~~~~~~~~~g~v~~~~~~- 123 (246)
T PF08450_consen 50 PDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVD----PDGNLYVTDSG-GGGASGIDPGSVYRIDPD- 123 (246)
T ss_dssp TTSEEEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-----TTS-EEEEEEC-CBCTTCGGSEEEEEEETT-
T ss_pred cCCEEEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEc----CCCCEEEEecC-CCccccccccceEEECCC-
Confidence 47888888776666666 222 222 12222222332 56778876431 1111111 345677888
Q ss_pred CceeecCC-CCCceeEEEEECC--eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC-----cceeeE
Q 012294 208 LNWENVTR-SSSTVQAIGSSDK--HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP-----ATKLRW 279 (466)
Q Consensus 208 ~~W~~va~-Mr~~~~Ava~l~~--~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~-----~~k~~~ 279 (466)
.+.+.+.. +...-+ ++...+ .||+.- ...+.|.+||+..-. .++..++.| ...+ |..+..
T Consensus 124 ~~~~~~~~~~~~pNG-i~~s~dg~~lyv~d----s~~~~i~~~~~~~~~--~~~~~~~~~-----~~~~~~~g~pDG~~v 191 (246)
T PF08450_consen 124 GKVTVVADGLGFPNG-IAFSPDGKTLYVAD----SFNGRIWRFDLDADG--GELSNRRVF-----IDFPGGPGYPDGLAV 191 (246)
T ss_dssp SEEEEEEEEESSEEE-EEEETTSSEEEEEE----TTTTEEEEEEEETTT--CCEEEEEEE-----EE-SSSSCEEEEEEE
T ss_pred CeEEEEecCcccccc-eEECCcchheeecc----cccceeEEEeccccc--cceeeeeeE-----EEcCCCCcCCCcceE
Confidence 55444432 333334 666643 588721 125679999997511 111122222 1111 122222
Q ss_pred EeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceee-ecCCCceEE
Q 012294 280 VSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTV-SDNLSAIYK 337 (466)
Q Consensus 280 ~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v-~~~~~~i~~ 337 (466)
-.+|.||++.- ..+.|.+|||+ ++++=+..-|...-..+++ .++...||.
T Consensus 192 -D~~G~l~va~~------~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 192 -DSDGNLWVADW------GGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp -BTTS-EEEEEE------TTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred -cCCCCEEEEEc------CCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 35889999855 13479999999 7766544434333344444 245555554
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=80.57 E-value=4.4 Score=41.74 Aligned_cols=147 Identities=20% Similarity=0.297 Sum_probs=93.1
Q ss_pred CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEE
Q 012294 227 DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFW 305 (466)
Q Consensus 227 ~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~y 305 (466)
+-+.+| |++ -+++..|.-..-.|...++-+. ...+.++|.+-+|.||+-. . -...|++|
T Consensus 219 ~~~~~a~gsY-----~q~~giy~~~~~~pl~llggh~---------gGvThL~~~edGn~lfsGa-----R-k~dkIl~W 278 (406)
T KOG2919|consen 219 DSKTLAVGSY-----GQRVGIYNDDGRRPLQLLGGHG---------GGVTHLQWCEDGNKLFSGA-----R-KDDKILCW 278 (406)
T ss_pred CCcceeeecc-----cceeeeEecCCCCceeeecccC---------CCeeeEEeccCcCeecccc-----c-CCCeEEEE
Confidence 345777 776 3456777766655665555433 2467899999999988633 3 24489999
Q ss_pred eCCCC-eeeeEEcCCc---ccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcc-cccc--ccccce
Q 012294 306 DIRSG-NVAWEVKDEV---DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKM-VNGK--RKEGFG 378 (466)
Q Consensus 306 Dprt~-~~vW~~~~~~---d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~-m~~~--~~~~~~ 378 (466)
|.|.- .+||+.-.+. ..|.-++.++.+..| +-|..+|-+-|=||..++. ||-+-....- .|+- .|- .-
T Consensus 279 DiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~L-asG~tdG~V~vwdlk~~gn---~~sv~~~~sd~vNgvslnP~-mp 353 (406)
T KOG2919|consen 279 DIRYSRDPVYALERHVGDTNQRILFDLDPKGEIL-ASGDTDGSVRVWDLKDLGN---EVSVTGNYSDTVNGVSLNPI-MP 353 (406)
T ss_pred eehhccchhhhhhhhccCccceEEEecCCCCcee-eccCCCccEEEEecCCCCC---cccccccccccccceecCcc-cc
Confidence 98865 8899998773 356667788877763 2344999999999999772 3333221110 1100 011 33
Q ss_pred eEEEEECCEEEEE-eCCeEEE
Q 012294 379 CKIECHANQVFCG-KGGEIEL 398 (466)
Q Consensus 379 ~~~~~~~~~lf~~-~~~~~~v 398 (466)
....++|.++|.- +.|++|.
T Consensus 354 ilatssGqr~f~~~~dD~ge~ 374 (406)
T KOG2919|consen 354 ILATSSGQRIFKYPKDDNGEL 374 (406)
T ss_pred eeeeccCceeecCCCcccccc
Confidence 4567888888876 3344443
No 165
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=80.25 E-value=23 Score=36.83 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=71.7
Q ss_pred eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCC
Q 012294 229 HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR 308 (466)
Q Consensus 229 ~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr 308 (466)
.+|+|.+.- +....|.+|+..|-+ .++.... -......|+-+.|.+-...||++..-+...+. ..-.+|++
T Consensus 4 ~~YiGtyT~-~~s~gI~v~~ld~~~--g~l~~~~----~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggv--aay~iD~~ 74 (346)
T COG2706 4 TVYIGTYTK-RESQGIYVFNLDTKT--GELSLLQ----LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGV--AAYRIDPD 74 (346)
T ss_pred EEEEeeecc-cCCCceEEEEEeCcc--cccchhh----hccccCCCceEEECCCCCEEEEEEecCCcCcE--EEEEEcCC
Confidence 578865532 226789999988511 1111100 01111225556666677899999885332211 34556777
Q ss_pred CCeeeeEEcCC----cccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 309 SGNVAWEVKDE----VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 309 t~~~vW~~~~~----~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
+|+ -+.... +.+-+.++++++++.+|..-=+.|.+-+.-++.-+
T Consensus 75 ~G~--Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG 122 (346)
T COG2706 75 DGR--LTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADG 122 (346)
T ss_pred CCe--EEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCC
Confidence 787 555544 55557889999999999777789998888887754
No 166
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=80.18 E-value=70 Score=36.16 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=64.7
Q ss_pred CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC
Q 012294 217 SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI 295 (466)
Q Consensus 217 r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~ 295 (466)
..+++++...+.-.-+ |.. ..++-+|-+..+... -.+|+. ..|+. +.+....|+.|+-
T Consensus 101 ~snVC~ls~~~~~~~iSgSW-----D~TakvW~~~~l~~~-l~gH~a----sVWAv--------~~l~e~~~vTgsa--- 159 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGTLISGSW-----DSTAKVWRIGELVYS-LQGHTA----SVWAV--------ASLPENTYVTGSA--- 159 (745)
T ss_pred ccceeeeecCCcCceEeccc-----ccceEEecchhhhcc-cCCcch----heeee--------eecCCCcEEeccC---
Confidence 4555544433444434 433 345566655542211 225544 44542 1233348998883
Q ss_pred CcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeec
Q 012294 296 SKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDL 350 (466)
Q Consensus 296 ~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dl 350 (466)
..+|.+|.- ++++-++++|.||.=.+++-+++.. .=|+++|-+-.-||
T Consensus 160 ---DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~f--lScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 160 ---DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHF--LSCSNDGSIRLWDL 207 (745)
T ss_pred ---cceeeeccC--CchhhhhccchhheeeeEEecCCCe--EeecCCceEEEEec
Confidence 448999986 7777999999999888877776554 35888888766666
No 167
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=79.94 E-value=3.5 Score=42.77 Aligned_cols=91 Identities=25% Similarity=0.395 Sum_probs=65.4
Q ss_pred ECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC------cceeeEEe-eCCeEEEEeecCCCCcc
Q 012294 226 SDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP------ATKLRWVS-SYNLLLASGSHSDISKV 298 (466)
Q Consensus 226 l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~------~~k~~~~~-~~~~Lyv~Gg~~g~~~~ 298 (466)
.++.++.|+.+ ..|-.||..+ +.| |++|.... .+.++-+. .+-+|+|++.
T Consensus 263 s~nLv~~GcRn-----geI~~iDLR~-------rnq----G~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M------- 319 (425)
T KOG2695|consen 263 SDNLVFNGCRN-----GEIFVIDLRC-------RNQ----GNGWCAQRLYHDSSVTSLQILQFSQQKLMASDM------- 319 (425)
T ss_pred cCCeeEecccC-----CcEEEEEeee-------ccc----CCCcceEEEEcCcchhhhhhhccccceEeeccC-------
Confidence 45667776653 4678999988 332 47787643 23445555 6678888876
Q ss_pred cceEEEEeCCCCee---eeEEcCC--cccccceeeecCCCceEEEE
Q 012294 299 TGNIKFWDIRSGNV---AWEVKDE--VDCFSDVTVSDNLSAIYKVG 339 (466)
Q Consensus 299 ~~sVe~yDprt~~~---vW~~~~~--~d~~~~~~v~~~~~~i~~v~ 339 (466)
.+.|.+||-|.-++ |-+.-+| .-....+.|.++.+.||.||
T Consensus 320 ~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G 365 (425)
T KOG2695|consen 320 TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG 365 (425)
T ss_pred cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc
Confidence 56899999999988 8888888 33456678999999988854
No 168
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=79.75 E-value=23 Score=38.15 Aligned_cols=60 Identities=28% Similarity=0.344 Sum_probs=44.4
Q ss_pred EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCce
Q 012294 279 WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEV 345 (466)
Q Consensus 279 ~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l 345 (466)
|.+..|...+..++ .++|.+||...+.+.=.+..|+++.-+++.++++..|- =|..+|.|
T Consensus 417 ~n~~~~~~l~sas~------dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA-sGs~dg~V 476 (524)
T KOG0273|consen 417 SNPNMNLMLASASF------DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA-SGSLDGCV 476 (524)
T ss_pred CCCcCCceEEEeec------CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE-ecCCCCee
Confidence 44566777777773 45899999999999999999988888888888777621 23355553
No 169
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=79.71 E-value=13 Score=43.43 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=50.7
Q ss_pred eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCc
Q 012294 276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGE 344 (466)
Q Consensus 276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~ 344 (466)
-+.|-+ ++.++|+++ +.++|=.||.+|-..+-.+.+|.-..-+++.|+-|.. .+++++|
T Consensus 134 Dv~Wsp-~~~~lvS~s------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky---~ASqsdD 192 (942)
T KOG0973|consen 134 DVNWSP-DDSLLVSVS------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY---FASQSDD 192 (942)
T ss_pred eeccCC-CccEEEEec------ccceEEEEccccceeeeeeecccccccceEECCccCe---eeeecCC
Confidence 455776 889999998 4558999999999999999999777788999999998 8888777
No 170
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.31 E-value=3.8 Score=26.76 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=22.6
Q ss_pred eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEE
Q 012294 282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEV 316 (466)
Q Consensus 282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~ 316 (466)
.++.||+... .+.+-.+|+++++.+|+.
T Consensus 5 ~~~~v~~~~~-------~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGST-------DGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcC-------CCEEEEEEcccCcEEEEc
Confidence 4568887654 468999999999999986
No 171
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=78.82 E-value=1.3e+02 Score=34.59 Aligned_cols=184 Identities=18% Similarity=0.242 Sum_probs=106.2
Q ss_pred EECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEE
Q 012294 225 SSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIK 303 (466)
Q Consensus 225 ~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe 303 (466)
.-||.+.| |+++ +.|-+||..+--...+... +. .+.+.++|...++.|+.+.- .|+|+
T Consensus 359 SpDgq~iaTG~eD-----gKVKvWn~~SgfC~vTFte------Ht---s~Vt~v~f~~~g~~llssSL-------DGtVR 417 (893)
T KOG0291|consen 359 SPDGQLIATGAED-----GKVKVWNTQSGFCFVTFTE------HT---SGVTAVQFTARGNVLLSSSL-------DGTVR 417 (893)
T ss_pred CCCCcEEEeccCC-----CcEEEEeccCceEEEEecc------CC---CceEEEEEEecCCEEEEeec-------CCeEE
Confidence 34566666 8874 4678888877222222222 11 13456778877877776664 67999
Q ss_pred EEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccc--ceeE
Q 012294 304 FWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG--FGCK 380 (466)
Q Consensus 304 ~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~--~~~~ 380 (466)
.||...-+...++..| --.|+-++|++.|.. ||+-.=+.|-+.+=++.+ +.=..+ +++ .|| ++..
T Consensus 418 AwDlkRYrNfRTft~P~p~QfscvavD~sGel---V~AG~~d~F~IfvWS~qT-GqllDi------LsG--HEgPVs~l~ 485 (893)
T KOG0291|consen 418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL---VCAGAQDSFEIFVWSVQT-GQLLDI------LSG--HEGPVSGLS 485 (893)
T ss_pred eeeecccceeeeecCCCceeeeEEEEcCCCCE---EEeeccceEEEEEEEeec-Ceeeeh------hcC--CCCcceeeE
Confidence 9999999989999888 445777788888887 666444444444444442 110111 221 122 2222
Q ss_pred EEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEEEeeccceEE
Q 012294 381 IECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFVTRKGQQTVE 457 (466)
Q Consensus 381 ~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~~~~~~~~~~ 457 (466)
.--+++-|+.. =+..|-.|.=. ..+ +--|.+ + -......++|= |.+|.|+--|-| |-
T Consensus 486 f~~~~~~LaS~SWDkTVRiW~if---~s~-----~~vEtl-~----------i~sdvl~vsfrPdG~elaVaTldgq-It 545 (893)
T KOG0291|consen 486 FSPDGSLLASGSWDKTVRIWDIF---SSS-----GTVETL-E----------IRSDVLAVSFRPDGKELAVATLDGQ-IT 545 (893)
T ss_pred EccccCeEEeccccceEEEEEee---ccC-----ceeeeE-e----------eccceeEEEEcCCCCeEEEEEecce-EE
Confidence 33334433332 57788888876 111 123333 1 23456777777 888888877643 45
Q ss_pred Eecc
Q 012294 458 VWQS 461 (466)
Q Consensus 458 vw~~ 461 (466)
.|++
T Consensus 546 f~d~ 549 (893)
T KOG0291|consen 546 FFDI 549 (893)
T ss_pred EEEh
Confidence 5553
No 172
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.33 E-value=12 Score=41.84 Aligned_cols=136 Identities=15% Similarity=0.247 Sum_probs=78.8
Q ss_pred ceeeeeCCCCc-eeecCCC---CCceeEEEE--ECCeEEE-EecCCCcCCCeeEEEecCCC--CccccccccccccCCce
Q 012294 199 LENGYVKETLN-WENVTRS---SSTVQAIGS--SDKHLFV-SFESGRRNSNSIMVYDINSL--KPVNEIGQNEIYGTDIE 269 (466)
Q Consensus 199 svE~ydp~t~~-W~~va~M---r~~~~Ava~--l~~~IYa-Gg~~g~~~l~sVE~YDp~t~--~~~~~~~~~~~~~~~~w 269 (466)
+|..+++..+. |. ...+ +-++.++|. -++.++| ||-+ ..|-.||.++. +.++..+.-. .-
T Consensus 96 TVK~W~~~~~~~~c-~stir~H~DYVkcla~~ak~~~lvaSgGLD-----~~IflWDin~~~~~l~~s~n~~t-----~~ 164 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFC-MSTIRTHKDYVKCLAYIAKNNELVASGGLD-----RKIFLWDINTGTATLVASFNNVT-----VN 164 (735)
T ss_pred eEEEeecccCcchh-HhhhhcccchheeeeecccCceeEEecCCC-----ccEEEEEccCcchhhhhhccccc-----cc
Confidence 46666666654 32 1222 445544444 5667888 7653 45788888873 1222221111 00
Q ss_pred eecCcceeeE--Ee--eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCce
Q 012294 270 SAIPATKLRW--VS--SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEV 345 (466)
Q Consensus 270 ~~~~~~k~~~--~~--~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l 345 (466)
+.+..-|-.. +. -++.++|.||. ...+++||||+++-+=...+|.|-.-.+-+.+||..+. =++-+|.+
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgt------ek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtI 237 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGT------EKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTI 237 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCc------ccceEEeccccccceeeeeccccceEEEEEcCCCCeEe-ecCCCceE
Confidence 1110001111 11 24468888883 44799999999998878889988778888899998844 34467775
Q ss_pred eEeeccc
Q 012294 346 SYMDLRK 352 (466)
Q Consensus 346 ~~~dlr~ 352 (466)
-+=||+.
T Consensus 238 rlWdLgq 244 (735)
T KOG0308|consen 238 RLWDLGQ 244 (735)
T ss_pred Eeeeccc
Confidence 5555543
No 173
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=78.20 E-value=27 Score=38.65 Aligned_cols=177 Identities=18% Similarity=0.236 Sum_probs=91.2
Q ss_pred CcEEEEecccCCCceeccceeeeeCCCCceeecCCC--------------CCceeEEEEECCeEEE--EecCCCcCCCee
Q 012294 181 PGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS--------------SSTVQAIGSSDKHLFV--SFESGRRNSNSI 244 (466)
Q Consensus 181 ~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M--------------r~~~~Ava~l~~~IYa--Gg~~g~~~l~sV 244 (466)
..|.|+|| .+| .||.+||...+ .+..+ ..++.|+.+.|+-|=+ |-. ..+|
T Consensus 187 hgLla~Gt--~~g-----~VEfwDpR~ks--rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-----~G~v 252 (703)
T KOG2321|consen 187 HGLLACGT--EDG-----VVEFWDPRDKS--RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-----TGSV 252 (703)
T ss_pred cceEEecc--cCc-----eEEEecchhhh--hheeeecccccCCCccccccCcceEEEecCCceeEEeecc-----CCcE
Confidence 35788888 555 58999988765 23322 1224445556643333 322 5678
Q ss_pred EEEecCCCCccccccccccccCCceeecCcceeeEEee--CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCccc
Q 012294 245 MVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSS--YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDC 322 (466)
Q Consensus 245 E~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~--~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~ 322 (466)
..||..+-+|.--=+| --.++.-++.|... .+.|+.+ ....+.+||+.+++. -...||...
T Consensus 253 ~iyDLRa~~pl~~kdh--------~~e~pi~~l~~~~~~~q~~v~S~--------Dk~~~kiWd~~~Gk~-~asiEpt~~ 315 (703)
T KOG2321|consen 253 LIYDLRASKPLLVKDH--------GYELPIKKLDWQDTDQQNKVVSM--------DKRILKIWDECTGKP-MASIEPTSD 315 (703)
T ss_pred EEEEcccCCceeeccc--------CCccceeeecccccCCCceEEec--------chHHhhhcccccCCc-eeeccccCC
Confidence 9999999444433333 11233445667654 3333322 244799999999973 333355433
Q ss_pred ccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeCC
Q 012294 323 FSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKGG 394 (466)
Q Consensus 323 ~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~ 394 (466)
+-|+..-++.+++| ++-.++.+--.-.-.|+-- =.|++-=.-++. .-+ ..+.-.+|++.=|+++.+
T Consensus 316 lND~C~~p~sGm~f-~Ane~~~m~~yyiP~LGPa---PrWCSfLdnlTE-ElE-E~~~~TVYDnYkFvTkkd 381 (703)
T KOG2321|consen 316 LNDFCFVPGSGMFF-TANESSKMHTYYIPSLGPA---PRWCSFLDNLTE-ELE-ENPETTVYDNYKFVTKKD 381 (703)
T ss_pred cCceeeecCCceEE-EecCCCcceeEEccccCCC---chhhhHHHhHHH-HHh-cCCccccccceeeeeHHH
Confidence 55555555555544 2222222111111122211 112210000221 112 566778999999999874
No 174
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=78.09 E-value=15 Score=37.51 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=43.0
Q ss_pred eeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 281 SSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 281 ~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
+.+ =.|.+++ ...+|++||.|+.+++=-..-.+ +-=++.+++ +-||+++..++.+.+-|||+.+
T Consensus 110 P~~-d~FlS~S------~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~-GLifA~~~~~~~IkLyD~Rs~d 173 (311)
T KOG1446|consen 110 PKD-DTFLSSS------LDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPE-GLIFALANGSELIKLYDLRSFD 173 (311)
T ss_pred CCC-CeEEecc------cCCeEEeeEecCCCCceEEecCC--CcceeECCC-CcEEEEecCCCeEEEEEecccC
Confidence 444 3455555 35589999999887664443223 122234444 4578898888899999999997
No 175
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=77.63 E-value=78 Score=31.38 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=34.9
Q ss_pred eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-------cccccceeeecCCCc
Q 012294 278 RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-------VDCFSDVTVSDNLSA 334 (466)
Q Consensus 278 ~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-------~d~~~~~~v~~~~~~ 334 (466)
....-+|.++|+|.. ..+|+.||.|-+.+|-..-.- ....+.++|++.|..
T Consensus 188 alyswn~~m~~sgsq------dktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 188 ALYSWNGAMFASGSQ------DKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred EEEEecCcEEEccCC------CceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 344568888888873 448999999999999765321 134466667766655
No 176
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=77.12 E-value=7.6 Score=41.73 Aligned_cols=153 Identities=18% Similarity=0.336 Sum_probs=99.4
Q ss_pred cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCC-CeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294 274 ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRS-GNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 274 ~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt-~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
...++|.+..+.|+.+||- .+.|.+||... +.+|-++.+|...+-++.-+.++..+. =++++..|=.-|.-.
T Consensus 217 vsai~~fp~~~hLlLS~gm------D~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGM------DGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFLKLWDTET 289 (503)
T ss_pred cchhhhccceeeEEEecCC------CceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceeeeeecccc
Confidence 4457788999999999994 44799999988 699999999977778888888888844 577888854444433
Q ss_pred cCCCCCeEEeccCCccccccccccceeEEEEECCEEEEEeC--CeEEEeEeeeecCCCCCCCCCcccceeeccccCcccc
Q 012294 353 LGDSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG--GEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTD 430 (466)
Q Consensus 353 ~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 430 (466)
| .++.. |+. ...-.-.|.+.-+..+|.+.+ +.|--|-- |.|+.+.| =|
T Consensus 290 -G-----~~~~~----f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi--------Rs~kvvqe-----------Yd 339 (503)
T KOG0282|consen 290 -G-----QVLSR----FHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI--------RSGKVVQE-----------YD 339 (503)
T ss_pred -c-----eEEEE----Eec-CCCceeeecCCCCCcEEEEecCCCcEEEEec--------cchHHHHH-----------HH
Confidence 1 34443 331 000022333444446776644 33444422 11122222 12
Q ss_pred CCCCceEEEee-ecceeEEEeeccceEEEeccCC
Q 012294 431 MGGSKITNLSF-GGNKMFVTRKGQQTVEVWQSSS 463 (466)
Q Consensus 431 ~~~~~i~~~~~-gg~r~f~~~~~~~~~~vw~~~~ 463 (466)
-.-|.|-+|.| =++|=||+-.|.-.|-|||-.-
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~ 373 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRI 373 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCC
Confidence 25567888876 5778899999999999999543
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=76.83 E-value=51 Score=34.22 Aligned_cols=171 Identities=15% Similarity=0.219 Sum_probs=96.0
Q ss_pred EcCCceeeEecCC-CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEE
Q 012294 148 SHGSKITSFDWSM-RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSS 226 (466)
Q Consensus 148 a~GG~ve~YDW~~-a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l 226 (466)
.-|+.+--|-|-. .....+-+++-++.+ -+.-|-..-. ++|.-. .+--.||... + + ...+. +++.
T Consensus 102 ~eg~tvydy~wYs~M~s~qP~t~l~a~ss---r~~PIh~wda--ftG~lr-aSy~~ydh~d-e---~---taAhs-L~Fs 167 (406)
T KOG2919|consen 102 QEGETVYDYCWYSRMKSDQPSTNLFAVSS---RDQPIHLWDA--FTGKLR-ASYRAYDHQD-E---Y---TAAHS-LQFS 167 (406)
T ss_pred ccCCEEEEEEeeeccccCCCccceeeecc---ccCceeeeec--cccccc-cchhhhhhHH-h---h---hhhee-EEec
Confidence 3344433333876 555556666555542 3444555544 555321 1222333221 1 1 13333 5665
Q ss_pred CC--eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCc---------ceeeEEeeCCeEEEEeecCCC
Q 012294 227 DK--HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA---------TKLRWVSSYNLLLASGSHSDI 295 (466)
Q Consensus 227 ~~--~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~---------~k~~~~~~~~~Lyv~Gg~~g~ 295 (466)
++ +||||+. ++|-+||... | |+.. +..+.+.. ..+...+.+..++++|+|.
T Consensus 168 ~DGeqlfaGyk------rcirvFdt~R--p----Gr~c----~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-- 229 (406)
T KOG2919|consen 168 PDGEQLFAGYK------RCIRVFDTSR--P----GRDC----PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-- 229 (406)
T ss_pred CCCCeEeeccc------ceEEEeeccC--C----CCCC----cchhhhhcccccccceeeeeeccCCCCcceeeeccc--
Confidence 54 7999654 5788999844 0 2211 11111111 1123446788899999953
Q ss_pred CcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 296 SKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 296 ~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
.++-+|.-....+.-..-+++--+..+--.++|+.+|.-.-++..|-.=|||...
T Consensus 230 ----q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 230 ----QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred ----ceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 3455555555555566667765566667788999999544499999999999866
No 178
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=76.31 E-value=70 Score=32.81 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=52.6
Q ss_pred CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 283 YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 283 ~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
++.|.-..| ..++-+||.++++.+=++.+|.--...+++++...-.|.=|+.+..-++=|+|+-.
T Consensus 156 D~~ilT~SG-------D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 156 DNHILTGSG-------DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred CCceEecCC-------CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 566655555 45899999999999999999943445678888778889999999999999999854
No 179
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=76.19 E-value=34 Score=34.65 Aligned_cols=100 Identities=17% Similarity=0.245 Sum_probs=59.9
Q ss_pred ccceeeeeCCCCceeecCCC-CCceeEEEEE-CCeEEEEec---CCCcCCCeeEEEecCCCCccccccccccccCCceee
Q 012294 197 LDLENGYVKETLNWENVTRS-SSTVQAIGSS-DKHLFVSFE---SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESA 271 (466)
Q Consensus 197 l~svE~ydp~t~~W~~va~M-r~~~~Ava~l-~~~IYaGg~---~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~ 271 (466)
+..+=.||+.+.+|..+..= .-.+.++... ++.|||||. ++. ....+-.||..+ ..|+.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~-~~~~la~yd~~~---------------~~w~~ 78 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGT-NSSNLATYDFKN---------------QTWSS 78 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCC-CceeEEEEecCC---------------Ceeee
Confidence 34454789999999987654 4444445544 778999553 221 367899999998 44544
Q ss_pred cCc-------ceeeEE---e-eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 272 IPA-------TKLRWV---S-SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 272 ~~~-------~k~~~~---~-~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
.+. ..+..+ . -...+++.|.. .. -..++-.|| -.+ |...+.
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~-g~~~l~~~d--Gs~--W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRS--AN-GSTFLMKYD--GSS--WSSIGS 130 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEecee--cC-CCceEEEEc--CCc--eEeccc
Confidence 443 112222 1 23457777774 11 234789995 335 888544
No 180
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=76.17 E-value=4.8 Score=27.77 Aligned_cols=29 Identities=17% Similarity=0.426 Sum_probs=22.8
Q ss_pred CeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 284 NLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 284 ~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
|.||+. . ..+++..+|.+||+++|+....
T Consensus 1 ~~v~~~-~------~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 1 GRVYVG-T------PDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TEEEEE-T------TTSEEEEEETTTTSEEEEEESS
T ss_pred CEEEEe-C------CCCEEEEEECCCCCEEEeeeCC
Confidence 456665 3 3568999999999999999654
No 181
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.01 E-value=21 Score=37.99 Aligned_cols=149 Identities=18% Similarity=0.263 Sum_probs=95.7
Q ss_pred eeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC-CcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 276 KLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD-EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 276 k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~-~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
-+.|.+-++.|.++|- ...+.+||..|+..+-.... .+++....+=.+|+-. |++|+.++.++|-||--.+
T Consensus 274 yi~wSPDdryLlaCg~-------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGF-------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred EEEECCCCCeEEecCc-------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcch
Confidence 4557777777777664 23499999999986644422 2566667777788888 7788899999999998776
Q ss_pred CCCCeEEeccCCccccccccccceeEEEEECCEEEEEe-CCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCC
Q 012294 355 DSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGK-GGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGG 433 (466)
Q Consensus 355 ~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 433 (466)
.+.|..+.. +|. ...++.--|..|+.+. +..+..+. |--.+++..-++.
T Consensus 346 -~~~W~gvr~-~~v--------~dlait~Dgk~vl~v~~d~~i~l~~--------------------~e~~~dr~lise~ 395 (519)
T KOG0293|consen 346 -LGNWEGVRD-PKV--------HDLAITYDGKYVLLVTVDKKIRLYN--------------------REARVDRGLISEE 395 (519)
T ss_pred -hhccccccc-cee--------EEEEEcCCCcEEEEEecccceeeec--------------------hhhhhhhcccccc
Confidence 678887775 111 2223333334444443 22222222 1112222233566
Q ss_pred CceEEEeeecc-eeEEEeeccceEEEeccC
Q 012294 434 SKITNLSFGGN-KMFVTRKGQQTVEVWQSS 462 (466)
Q Consensus 434 ~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~ 462 (466)
..|+++.+-+| |+++.-=.-|.+-.|+-.
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 68999999776 777788888999999743
No 182
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.00 E-value=14 Score=37.02 Aligned_cols=73 Identities=18% Similarity=0.409 Sum_probs=64.0
Q ss_pred eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
+-|-...+..++.+.+|| +|.+|||.-.+-|=+++++.+|+-.+..++.-.-+|.=++-+|.|-+-|+|..+.
T Consensus 110 vdwn~~~r~~~ltsSWD~------TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTSSWDG------TIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred eccccccceeEEeeccCC------ceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence 345567888999988666 7999999999999999999999999999999999999999999999999999764
No 183
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=75.52 E-value=32 Score=41.24 Aligned_cols=112 Identities=14% Similarity=0.241 Sum_probs=65.5
Q ss_pred EEEE--CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCce------------eecCcceeeEEeeCCeEEE
Q 012294 223 IGSS--DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIE------------SAIPATKLRWVSSYNLLLA 288 (466)
Q Consensus 223 va~l--~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w------------~~~~~~k~~~~~~~~~Lyv 288 (466)
+++. ++.||+... .-+.|-+||+.+ +....|.+++. ....|..+.+.+-++.||+
T Consensus 688 Va~dp~~g~LyVad~----~~~~I~v~d~~~-------g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYV 756 (1057)
T PLN02919 688 VCFEPVNEKVYIAMA----GQHQIWEYNISD-------GVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYI 756 (1057)
T ss_pred EEEecCCCeEEEEEC----CCCeEEEEECCC-------CeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEE
Confidence 5554 578999322 135688999887 22222222211 0112334445555667999
Q ss_pred EeecCCCCcccceEEEEeCCCCeeeeEEcCC----------c--c---------cccceeeecCCCceEEEEEeeCceeE
Q 012294 289 SGSHSDISKVTGNIKFWDIRSGNVAWEVKDE----------V--D---------CFSDVTVSDNLSAIYKVGINSGEVSY 347 (466)
Q Consensus 289 ~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~----------~--d---------~~~~~~v~~~~~~i~~v~~~~g~l~~ 347 (466)
+-. ..+.|.+||+.++...+-.... + | .-.++++++++. ||+....++.+.+
T Consensus 757 ADs------~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrv 829 (1057)
T PLN02919 757 ADS------ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKK 829 (1057)
T ss_pred EEC------CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEE
Confidence 876 2458999999988754432100 0 0 113556666664 8888888888888
Q ss_pred eeccc
Q 012294 348 MDLRK 352 (466)
Q Consensus 348 ~dlr~ 352 (466)
.|+..
T Consensus 830 iD~~t 834 (1057)
T PLN02919 830 LDPAT 834 (1057)
T ss_pred EECCC
Confidence 88754
No 184
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=75.46 E-value=87 Score=37.63 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=46.7
Q ss_pred eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc--------------ccccceeeecCCCceEEEEEeeCceeE
Q 012294 282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV--------------DCFSDVTVSDNLSAIYKVGINSGEVSY 347 (466)
Q Consensus 282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~--------------d~~~~~~v~~~~~~i~~v~~~~g~l~~ 347 (466)
.+|.|||+-. ..+.|.+||+.++.+.... +.+ ..-.++++++++ .||+....++.+-+
T Consensus 813 ~dG~LYVADs------~N~rIrviD~~tg~v~tia-G~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 813 KDGQIYVADS------YNHKIKKLDPATKRVTTLA-GTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRY 884 (1057)
T ss_pred CCCcEEEEEC------CCCEEEEEECCCCeEEEEe-ccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEE
Confidence 4677999876 3458999999999855322 111 123456788777 48988889999999
Q ss_pred eeccccC
Q 012294 348 MDLRKLG 354 (466)
Q Consensus 348 ~dlr~~~ 354 (466)
.|+++..
T Consensus 885 id~~~~~ 891 (1057)
T PLN02919 885 LDLNKGE 891 (1057)
T ss_pred EECCCCc
Confidence 9997743
No 185
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=75.08 E-value=39 Score=37.04 Aligned_cols=108 Identities=16% Similarity=0.286 Sum_probs=76.3
Q ss_pred ECCeEEE-Eec-CCC-----cCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcc
Q 012294 226 SDKHLFV-SFE-SGR-----RNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKV 298 (466)
Q Consensus 226 l~~~IYa-Gg~-~g~-----~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~ 298 (466)
..|.||| .-. ++. ...+++-.||..+.+.+.++.--. .+..+.++.+--++.|..+..
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~--------~v~dqqvG~lWqkd~lItVSl------- 298 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS--------TVEDQQVGCLWQKDHLITVSL------- 298 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC--------chhceEEEEEEeCCeEEEEEc-------
Confidence 3456888 543 222 236899999999976666554311 134556665545777777664
Q ss_pred cceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEee
Q 012294 299 TGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMD 349 (466)
Q Consensus 299 ~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~d 349 (466)
.+++-.|+|...++.-...+|...+..+++.+++..|| =|.++|.+--=|
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~-SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY-SGSYDGHINSWD 348 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCCEEE-eeccCceEEEEe
Confidence 56899999999998899999988889999999999988 566777653333
No 186
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=74.56 E-value=9.6 Score=40.99 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=47.7
Q ss_pred CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 283 YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 283 ~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
.+.=|.++++ ..++.+||.+||+|.=.+..- .....+-.-+++..+|-||+.++.|---|+|+-+
T Consensus 269 ~g~~fLS~sf------D~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 269 CGTSFLSASF------DRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred cCCeeeeeec------ceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence 4555666664 558999999999988555422 1112334556888999999999999999999966
No 187
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=73.80 E-value=16 Score=39.39 Aligned_cols=93 Identities=19% Similarity=0.365 Sum_probs=63.5
Q ss_pred CCeeEEEecCCCCccccc-cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 241 SNSIMVYDINSLKPVNEI-GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~-~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
.++|-.||.+..+|++.+ .||+ +.+.+... -++...|.|-.|| .|-.|+-++++.|.+..+-
T Consensus 431 dstV~lwdv~~gv~i~~f~kH~~----------pVysvafS-~~g~ylAsGs~dg------~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 431 DSTVKLWDVESGVPIHTLMKHQE----------PVYSVAFS-PNGRYLASGSLDG------CVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred CCeEEEEEccCCceeEeeccCCC----------ceEEEEec-CCCcEEEecCCCC------eeEeccccchheeEeecCC
Confidence 468888999997777776 5544 33444443 3667777776544 6999999999999988654
Q ss_pred cccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294 320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
+ .+-.+.-..+|.. -.+|..+|.+.+.|||+
T Consensus 494 ~-~Ifel~Wn~~G~k-l~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 494 G-GIFELCWNAAGDK-LGACASDGSVCVLDLRK 524 (524)
T ss_pred C-eEEEEEEcCCCCE-EEEEecCCCceEEEecC
Confidence 3 2344445556644 23566889999999985
No 188
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=73.77 E-value=1.2e+02 Score=34.39 Aligned_cols=146 Identities=11% Similarity=0.181 Sum_probs=82.6
Q ss_pred CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCC
Q 012294 217 SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDI 295 (466)
Q Consensus 217 r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~ 295 (466)
.+.+=||+.+....|+ |+- .++|-.|.-.+ --+ .|.|..- .-+..+.+.+.=|++.++||
T Consensus 140 ~asVWAv~~l~e~~~vTgsa-----DKtIklWk~~~-------~l~-tf~gHtD-----~VRgL~vl~~~~flScsNDg- 200 (745)
T KOG0301|consen 140 TASVWAVASLPENTYVTGSA-----DKTIKLWKGGT-------LLK-TFSGHTD-----CVRGLAVLDDSHFLSCSNDG- 200 (745)
T ss_pred chheeeeeecCCCcEEeccC-----cceeeeccCCc-------hhh-hhccchh-----heeeeEEecCCCeEeecCCc-
Confidence 4555578889888999 542 45666666655 111 1222211 11234445665667777655
Q ss_pred CcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccc
Q 012294 296 SKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKE 375 (466)
Q Consensus 296 ~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~ 375 (466)
.|++||. ++.++-+..+|..=.=.++ ...+..+.+-|+.|+.|-+= .. + +|... .. .|.
T Consensus 201 -----~Ir~w~~-~ge~l~~~~ghtn~vYsis-~~~~~~~Ivs~gEDrtlriW-----~~-~--e~~q~----I~--lPt 259 (745)
T KOG0301|consen 201 -----SIRLWDL-DGEVLLEMHGHTNFVYSIS-MALSDGLIVSTGEDRTLRIW-----KK-D--ECVQV----IT--LPT 259 (745)
T ss_pred -----eEEEEec-cCceeeeeeccceEEEEEE-ecCCCCeEEEecCCceEEEe-----ec-C--ceEEE----Ee--cCc
Confidence 7999999 9999999998852222223 24566667778888885332 21 1 44443 22 132
Q ss_pred cceeEEEEE-CCEEEEE-eCCeEEEeEee
Q 012294 376 GFGCKIECH-ANQVFCG-KGGEIELWSEI 402 (466)
Q Consensus 376 ~~~~~~~~~-~~~lf~~-~~~~~~v~~~~ 402 (466)
.+-=.+.|. +|.+++. -+|-|.|||..
T Consensus 260 tsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 260 TSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred cceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 222222233 4555554 66777888875
No 189
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=73.61 E-value=63 Score=33.82 Aligned_cols=197 Identities=12% Similarity=-0.000 Sum_probs=113.5
Q ss_pred cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCcee-EEEEECCeEEEEecCCCcCCCeeEEEecCCCCccc
Q 012294 179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQ-AIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVN 256 (466)
Q Consensus 179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~-Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~ 256 (466)
...++|+..+ . .+.+...|..+++=....+. +.-.+ ++...++++|+.-... ..+.+-+.|+.|.+...
T Consensus 84 ~~~~vyv~~~--~-----~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~--~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 84 AGNKVYVTTG--D-----SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN--GNNTVSVIDAATNKVTA 154 (381)
T ss_pred CCCeEEEecC--C-----CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc--CCceEEEEeCCCCeEEE
Confidence 5567888877 3 24556666444432222222 21112 2344466899922111 26789999999966555
Q ss_pred cccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee-eE---EcCCcccccceeeecCC
Q 012294 257 EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA-WE---VKDEVDCFSDVTVSDNL 332 (466)
Q Consensus 257 ~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v-W~---~~~~~d~~~~~~v~~~~ 332 (466)
++.. ++ .|.....-+.++++|++-. ..+.|-..|+.++.+. ++ .......-+++.+++++
T Consensus 155 ~~~v-----G~-----~P~~~a~~p~g~~vyv~~~------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g 218 (381)
T COG3391 155 TIPV-----GN-----TPTGVAVDPDGNKVYVTNS------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDG 218 (381)
T ss_pred EEec-----CC-----CcceEEECCCCCeEEEEec------CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCC
Confidence 5222 11 2344445567888999883 2457899998888755 33 23335666888999999
Q ss_pred CceEEEEEee--CceeEeeccccCCCCCeE-EeccC-Ccccccccccc-ceeEEEEECCEEEEEeCCeEEEeEee
Q 012294 333 SAIYKVGINS--GEVSYMDLRKLGDSSEWI-CLGDG-RKMVNGKRKEG-FGCKIECHANQVFCGKGGEIELWSEI 402 (466)
Q Consensus 333 ~~i~~v~~~~--g~l~~~dlr~~~~~~~W~-~~~~~-~~~m~~~~~~~-~~~~~~~~~~~lf~~~~~~~~v~~~~ 402 (466)
..+|+..-.+ +.+...|+..... .+. ....+ .+.+....|.| .--......+.|++..+..-.|-..+
T Consensus 219 ~~~yV~~~~~~~~~v~~id~~~~~v--~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 219 NRVYVANDGSGSNNVLKIDTATGNV--TATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred CEEEEEeccCCCceEEEEeCCCceE--EEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 9999999987 6888888887542 111 11121 11111112333 22333344577777766665555544
No 190
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=73.57 E-value=5.3 Score=42.15 Aligned_cols=116 Identities=14% Similarity=0.212 Sum_probs=79.0
Q ss_pred eeeCCCCceeecCCCCCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEe
Q 012294 202 GYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVS 281 (466)
Q Consensus 202 ~ydp~t~~W~~va~Mr~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~ 281 (466)
+||+.+..|.+--. .|+.|++ .+-|--|||.|-+.++++-.-. -..|++.|-+
T Consensus 222 gwdVksvdWHP~kg-------------Liasgsk-----DnlVKlWDprSg~cl~tlh~HK---------ntVl~~~f~~ 274 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKG-------------LIASGSK-----DNLVKLWDPRSGSCLATLHGHK---------NTVLAVKFNP 274 (464)
T ss_pred CCCcceeccCCccc-------------eeEEccC-----CceeEeecCCCcchhhhhhhcc---------ceEEEEEEcC
Confidence 67888888875411 2333554 4588999999955444443311 0246667776
Q ss_pred eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecc
Q 012294 282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLR 351 (466)
Q Consensus 282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr 351 (466)
..|.|..++= .+++.+||.|+-+-+-...+|.+-.-+++=.+.+-.||..|+.+|.|.+-++=
T Consensus 275 n~N~Llt~sk-------D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 275 NGNWLLTGSK-------DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred CCCeeEEccC-------CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 6676665543 55899999997665666666754456666688899999999999998777665
No 191
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=73.52 E-value=84 Score=32.52 Aligned_cols=185 Identities=15% Similarity=0.071 Sum_probs=98.3
Q ss_pred CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceeeeeCCCCc-eeec---CC-----CCCceeEEEEECCeEE
Q 012294 161 RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENGYVKETLN-WENV---TR-----SSSTVQAIGSSDKHLF 231 (466)
Q Consensus 161 a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~-W~~v---a~-----Mr~~~~Ava~l~~~IY 231 (466)
++......+++. +-+.+-.+.+..|||... .....+.+=.+|=.... =... .+ ||+..- |+++.++||
T Consensus 40 ~~r~~~~~G~~~-veMLfR~N~laLVGGg~~-pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~ri-Vvvl~~~I~ 116 (346)
T KOG2111|consen 40 ASRQFIDGGFKI-VEMLFRSNYLALVGGGSR-PKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRI-VVVLENKIY 116 (346)
T ss_pred hhhccccCchhh-hhHhhhhceEEEecCCCC-CCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeE-EEEecCeEE
Confidence 333334444333 345566778888888321 33345556555422211 1111 11 155555 789999999
Q ss_pred E-EecCCCc---------CCCeeEEEecCCC-Ccccccccccc--c-cCCceeec-Cc---------ceeeEEeeCCeEE
Q 012294 232 V-SFESGRR---------NSNSIMVYDINSL-KPVNEIGQNEI--Y-GTDIESAI-PA---------TKLRWVSSYNLLL 287 (466)
Q Consensus 232 a-Gg~~g~~---------~l~sVE~YDp~t~-~~~~~~~~~~~--~-~~~~w~~~-~~---------~k~~~~~~~~~Ly 287 (466)
+ -|-+... +-+.+-+++|.+. +.++-=|++.. . -.-.|... +| ...--+..+|.+.
T Consensus 117 VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~v 196 (346)
T KOG2111|consen 117 VYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLV 196 (346)
T ss_pred EEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEE
Confidence 9 7753221 2234445555541 11111122110 0 00112211 11 1122345899999
Q ss_pred EEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc--cccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 288 ASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD--CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 288 v~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d--~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
|.+...|+ -|+.||.++++.+-|++.-.| -+--|+.+++.+. -+|-+.-|+|-+.-||--.
T Consensus 197 ATaStkGT-----LIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 197 ATASTKGT-----LIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEeccCcE-----EEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE-EEEEcCCCeEEEEEeecCC
Confidence 99998775 399999999999999875532 1233466777666 2244477888777777644
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=73.51 E-value=1.1e+02 Score=30.90 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=52.2
Q ss_pred cceEEEEeCCCCeeeeEEcCC--cccccc-------eeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccc
Q 012294 299 TGNIKFWDIRSGNVAWEVKDE--VDCFSD-------VTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMV 369 (466)
Q Consensus 299 ~~sVe~yDprt~~~vW~~~~~--~d~~~~-------~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m 369 (466)
.++|++||-+|.+.|-.. ++ ...+++ ++++.+... -||+.--.|..-.||+.|. +++=+ .
T Consensus 177 DGtvRvWd~kt~k~v~~i-e~yk~~~~lRp~~g~wigala~~edW--lvCGgGp~lslwhLrsse~----t~vfp----i 245 (325)
T KOG0649|consen 177 DGTVRVWDTKTQKHVSMI-EPYKNPNLLRPDWGKWIGALAVNEDW--LVCGGGPKLSLWHLRSSES----TCVFP----I 245 (325)
T ss_pred CccEEEEeccccceeEEe-ccccChhhcCcccCceeEEEeccCce--EEecCCCceeEEeccCCCc----eEEEe----c
Confidence 558999999999988544 33 111122 344444444 4788777888899999885 55544 1
Q ss_pred cccccccceeEEEEECCEEEEEe-CCeEEEeE
Q 012294 370 NGKRKEGFGCKIECHANQVFCGK-GGEIELWS 400 (466)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~lf~~~-~~~~~v~~ 400 (466)
|. .-.-+-.+..+|.+.. |..|.-|.
T Consensus 246 ----pa-~v~~v~F~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 246 ----PA-RVHLVDFVDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred ----cc-ceeEeeeecceEEEeccccceeeee
Confidence 11 2233455667777765 44555554
No 193
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=72.68 E-value=42 Score=38.06 Aligned_cols=192 Identities=20% Similarity=0.286 Sum_probs=110.9
Q ss_pred EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeec--Cc-ceeeEEeeCCeEEEEeecCCCCccc
Q 012294 223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAI--PA-TKLRWVSSYNLLLASGSHSDISKVT 299 (466)
Q Consensus 223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~--~~-~k~~~~~~~~~Lyv~Gg~~g~~~~~ 299 (466)
+.--+..+|+-+. ..-++.|+..| ++-. ..|+.+ +| +.+... ..+.|.+.||.||
T Consensus 70 l~~d~~~L~~a~r-----s~llrv~~L~t-------gk~i----rswKa~He~Pvi~ma~~-~~g~LlAtggaD~----- 127 (775)
T KOG0319|consen 70 LTPDEEVLVTASR-----SQLLRVWSLPT-------GKLI----RSWKAIHEAPVITMAFD-PTGTLLATGGADG----- 127 (775)
T ss_pred ecCCccEEEEeec-----cceEEEEEccc-------chHh----HhHhhccCCCeEEEEEc-CCCceEEeccccc-----
Confidence 4333445665222 34578999998 4322 446552 23 333343 4558999999544
Q ss_pred ceEEEEeCCCCeeeeEEcCCcccccceeeecC-CCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccc-cccccc
Q 012294 300 GNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDN-LSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNG-KRKEGF 377 (466)
Q Consensus 300 ~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~-~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~-~~~~~~ 377 (466)
.|.+||...+.|-=.+++++-..+.+..-++ +.-|-+.|.-++.+++=||+..- . |+.- |.. ++.. .
T Consensus 128 -~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~-t----cl~~----~~~H~S~v-t 196 (775)
T KOG0319|consen 128 -RVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR-T----CLHT----MILHKSAV-T 196 (775)
T ss_pred -eEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc-h----HHHH----HHhhhhhe-e
Confidence 7999999999999999987534444444442 33455788899999999998532 1 2221 110 0111 1
Q ss_pred eeEEEE-ECCEEEEEeCCeEEEeEeeeecCCCCCCC---CCcccceeeccccCccccCCCCceEEEeeecceeEEEeecc
Q 012294 378 GCKIEC-HANQVFCGKGGEIELWSEIVMGSRKSREG---GPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQ 453 (466)
Q Consensus 378 ~~~~~~-~~~~lf~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~ 453 (466)
+-.+.+ -..-|.++|+.-+.||-=+.-...+ -. .+++.-++=++ ..+++ .-.|.|+-+.
T Consensus 197 sL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~--~lp~ye~~E~vv~l~~-------~~~~~--------~~~~~TaG~~ 259 (775)
T KOG0319|consen 197 SLAFSEDSLELLSVGRDKVIIVWDLVQYKKLK--TLPLYESLESVVRLRE-------ELGGK--------GEYIITAGGS 259 (775)
T ss_pred eeeeccCCceEEEeccCcEEEEeehhhhhhhh--eechhhheeeEEEech-------hcCCc--------ceEEEEecCC
Confidence 222222 2356777799999999864221111 00 02222232221 23333 2589999999
Q ss_pred ceEEEeccCCC
Q 012294 454 QTVEVWQSSSR 464 (466)
Q Consensus 454 ~~~~vw~~~~~ 464 (466)
-.+.+|++.+.
T Consensus 260 g~~~~~d~es~ 270 (775)
T KOG0319|consen 260 GVVQYWDSESG 270 (775)
T ss_pred ceEEEEecccc
Confidence 99999998653
No 194
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=72.24 E-value=8.4 Score=41.80 Aligned_cols=190 Identities=19% Similarity=0.352 Sum_probs=114.5
Q ss_pred eEEEEecCCCcCCCeeEEEecCC--CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEe
Q 012294 229 HLFVSFESGRRNSNSIMVYDINS--LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWD 306 (466)
Q Consensus 229 ~IYaGg~~g~~~l~sVE~YDp~t--~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yD 306 (466)
.|.+||+ ..++-+||..+ .++-+|+.. .+..+-+ +..-+-.++.|++.. .+.|.+||
T Consensus 479 tLivGGe-----astlsiWDLAapTprikaelts----sapaCyA-----La~spDakvcFsccs-------dGnI~vwD 537 (705)
T KOG0639|consen 479 TLIVGGE-----ASTLSIWDLAAPTPRIKAELTS----SAPACYA-----LAISPDAKVCFSCCS-------DGNIAVWD 537 (705)
T ss_pred eEEeccc-----cceeeeeeccCCCcchhhhcCC----cchhhhh-----hhcCCccceeeeecc-------CCcEEEEE
Confidence 3666776 67889999987 222222221 1111111 111223445555554 55799999
Q ss_pred CCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC---------------C--CCCeEEeccCCcc-
Q 012294 307 IRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG---------------D--SSEWICLGDGRKM- 368 (466)
Q Consensus 307 prt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~---------------~--~~~W~~~~~~~~~- 368 (466)
.+...+|..+.+|.|.-.-+.++.+|-.|+ -|+-+.+|--=|||..- . .+-|+-++=.|--
T Consensus 538 Lhnq~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~v 616 (705)
T KOG0639|consen 538 LHNQTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNV 616 (705)
T ss_pred cccceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcE
Confidence 999999999999999889999999999988 68888888888888632 1 5668877653321
Q ss_pred --cccccccc------ceeEEE---EECCEEEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCc
Q 012294 369 --VNGKRKEG------FGCKIE---CHANQVFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSK 435 (466)
Q Consensus 369 --m~~~~~~~------~~~~~~---~~~~~lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 435 (466)
+.+.+++. -.|.|. +|.|+-|++ +++-+-+|+-+- +-.+|-- ++ +.-=-
T Consensus 617 evlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy------------GasiFqs----kE--~SsVl 678 (705)
T KOG0639|consen 617 EVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------------GASIFQS----KE--SSSVL 678 (705)
T ss_pred EEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcc------------ccceeec----cc--cCcce
Confidence 11101110 122222 467888988 455678888761 1222221 10 11112
Q ss_pred eEEEeeecceeEEEeeccceEEEe
Q 012294 436 ITNLSFGGNKMFVTRKGQQTVEVW 459 (466)
Q Consensus 436 i~~~~~gg~r~f~~~~~~~~~~vw 459 (466)
-|||++ -||+.||-+.+.---|.
T Consensus 679 sCDIS~-ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 679 SCDISF-DDKYIVTGSGDKKATVY 701 (705)
T ss_pred eeeecc-CceEEEecCCCcceEEE
Confidence 467776 47888887665443343
No 195
>PLN02772 guanylate kinase
Probab=71.76 E-value=11 Score=40.01 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=29.8
Q ss_pred EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC
Q 012294 279 WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD 318 (466)
Q Consensus 279 ~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~ 318 (466)
....++++||.||.+......+.+.+||+.|++ |..-.
T Consensus 30 av~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~--W~~P~ 67 (398)
T PLN02772 30 SVTIGDKTYVIGGNHEGNTLSIGVQILDKITNN--WVSPI 67 (398)
T ss_pred eEEECCEEEEEcccCCCccccceEEEEECCCCc--Eeccc
Confidence 445899999999966643356689999999999 88743
No 196
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=71.33 E-value=43 Score=33.09 Aligned_cols=113 Identities=20% Similarity=0.231 Sum_probs=69.6
Q ss_pred EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceE
Q 012294 223 IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNI 302 (466)
Q Consensus 223 va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sV 302 (466)
+-..+|.+||+| + ..++|--||..-++.+..++... .+.+-...+...+. +.-.|+|.|.|-. .+++
T Consensus 189 lyswn~~m~~sg---s-qdktirfwdlrv~~~v~~l~~~~--~~~glessavaav~-vdpsgrll~sg~~------dssc 255 (350)
T KOG0641|consen 189 LYSWNGAMFASG---S-QDKTIRFWDLRVNSCVNTLDNDF--HDGGLESSAVAAVA-VDPSGRLLASGHA------DSSC 255 (350)
T ss_pred EEEecCcEEEcc---C-CCceEEEEeeeccceeeeccCcc--cCCCcccceeEEEE-ECCCcceeeeccC------CCce
Confidence 345566677722 2 26789999999888888887643 22232222222222 2256788887752 3478
Q ss_pred EEEeCCCCeeeeEEcCCccccccee-eecCCCceEE-EEEeeCceeEeecc
Q 012294 303 KFWDIRSGNVAWEVKDEVDCFSDVT-VSDNLSAIYK-VGINSGEVSYMDLR 351 (466)
Q Consensus 303 e~yDprt~~~vW~~~~~~d~~~~~~-v~~~~~~i~~-v~~~~g~l~~~dlr 351 (466)
-+||.|-++++=.+.+|. +++- |.=.-+.-|. -|+++-.+-+.||.
T Consensus 256 ~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred EEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecc
Confidence 999999999999998885 4432 2223334444 35677776666654
No 197
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=71.27 E-value=22 Score=39.74 Aligned_cols=88 Identities=15% Similarity=0.338 Sum_probs=49.8
Q ss_pred CCeeEEEecCC-CCccc--cccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc
Q 012294 241 SNSIMVYDINS-LKPVN--EIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK 317 (466)
Q Consensus 241 l~sVE~YDp~t-~~~~~--~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~ 317 (466)
...||.|+|.. |-.-. +-+..+ ..-.+.|. -+++||.+|+ +++|--||+.+.+.--...
T Consensus 46 ~g~IEiwN~~~~w~~~~vi~g~~dr----------sIE~L~W~-e~~RLFS~g~-------sg~i~EwDl~~lk~~~~~d 107 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLEPVIHGPEDR----------SIESLAWA-EGGRLFSSGL-------SGSITEWDLHTLKQKYNID 107 (691)
T ss_pred CCcEEEEccCCCceeeEEEecCCCC----------ceeeEEEc-cCCeEEeecC-------CceEEEEecccCceeEEec
Confidence 67899999987 22111 111111 12356676 5889999987 6789999999887554442
Q ss_pred CCcccccceeeecCCCceEEEEEeeCceeE
Q 012294 318 DEVDCFSDVTVSDNLSAIYKVGINSGEVSY 347 (466)
Q Consensus 318 ~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~ 347 (466)
..+-.+=.|++.+.+. +-.||-.+|-|+.
T Consensus 108 ~~gg~IWsiai~p~~~-~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 108 SNGGAIWSIAINPENT-ILAIGCDDGVLYD 136 (691)
T ss_pred CCCcceeEEEeCCccc-eEEeecCCceEEE
Confidence 2222222334444442 2335555554433
No 198
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=71.10 E-value=14 Score=40.38 Aligned_cols=148 Identities=15% Similarity=0.192 Sum_probs=85.3
Q ss_pred CCcEEEEcC---CceeeEe---cCC-CCCCCccccce--eeeeecc-cCCcEEEEecccCCCceeccceeeeeCCCCcee
Q 012294 142 YGTLHVSHG---SKITSFD---WSM-RKKSTILTHFT--AVDSLLA-LSPGVAAAGATDFSGLQVLDLENGYVKETLNWE 211 (466)
Q Consensus 142 ~g~lyva~G---G~ve~YD---W~~-a~m~~~R~~~~--~v~sl~~-l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~ 211 (466)
++.+. |.| |.+..+| |.. ..|...-.+.. .++|+.+ .+|++.+--| +++.-.+=...-+.--.+.|+
T Consensus 328 dg~~i-Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg--~D~tLKvWDLrq~kkpL~~~t 404 (641)
T KOG0772|consen 328 DGKLI-AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG--FDDTLKVWDLRQFKKPLNVRT 404 (641)
T ss_pred Ccchh-hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc--CCCceeeeeccccccchhhhc
Confidence 56665 444 5565655 555 55544444443 4555555 3456666666 554322222222333456788
Q ss_pred ecCCC-CCceeEEEEE-CCeEEE-Eec--CCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeE
Q 012294 212 NVTRS-SSTVQAIGSS-DKHLFV-SFE--SGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLL 286 (466)
Q Consensus 212 ~va~M-r~~~~Ava~l-~~~IYa-Gg~--~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~L 286 (466)
.+..+ ..+-+ ++. +.+|.+ |-. ++.. ...+-.||+.|+..+..|+--. ...-+..|++--|.|
T Consensus 405 gL~t~~~~tdc--~FSPd~kli~TGtS~~~~~~-~g~L~f~d~~t~d~v~ki~i~~---------aSvv~~~WhpkLNQi 472 (641)
T KOG0772|consen 405 GLPTPFPGTDC--CFSPDDKLILTGTSAPNGMT-AGTLFFFDRMTLDTVYKIDIST---------ASVVRCLWHPKLNQI 472 (641)
T ss_pred CCCccCCCCcc--ccCCCceEEEecccccCCCC-CceEEEEeccceeeEEEecCCC---------ceEEEEeecchhhhe
Confidence 88887 33332 444 345544 443 2222 4568899999998888887622 224467899999999
Q ss_pred EEEeecCCCCcccceEEEEeCCCC
Q 012294 287 LASGSHSDISKVTGNIKFWDIRSG 310 (466)
Q Consensus 287 yv~Gg~~g~~~~~~sVe~yDprt~ 310 (466)
+|..|. |.. =-.|||...
T Consensus 473 ~~gsgd-G~~-----~vyYdp~~S 490 (641)
T KOG0772|consen 473 FAGSGD-GTA-----HVYYDPNES 490 (641)
T ss_pred eeecCC-Cce-----EEEECcccc
Confidence 998883 321 235777654
No 199
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=70.38 E-value=70 Score=32.81 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=69.5
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeE-EeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRW-VSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~-~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
.+++..||..+-+.+..+..+. || +..... +..+.+||....+ ..+|++.+..+|+.+.-+.+|
T Consensus 35 dDsl~LYd~~~g~~~~ti~skk-yG--------~~~~~Fth~~~~~i~sStk~------d~tIryLsl~dNkylRYF~GH 99 (311)
T KOG1446|consen 35 DDSLRLYDSLSGKQVKTINSKK-YG--------VDLACFTHHSNTVIHSSTKE------DDTIRYLSLHDNKYLRYFPGH 99 (311)
T ss_pred CCeEEEEEcCCCceeeEeeccc-cc--------ccEEEEecCCceEEEccCCC------CCceEEEEeecCceEEEcCCC
Confidence 5689999999833333333321 00 111111 1345666666653 458999999999999999999
Q ss_pred cccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
.+.+-++.+++-+.. |-=++.|.++.+=|||.-.
T Consensus 100 ~~~V~sL~~sP~~d~-FlS~S~D~tvrLWDlR~~~ 133 (311)
T KOG1446|consen 100 KKRVNSLSVSPKDDT-FLSSSLDKTVRLWDLRVKK 133 (311)
T ss_pred CceEEEEEecCCCCe-EEecccCCeEEeeEecCCC
Confidence 999999999998854 7677899999999999633
No 200
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=70.31 E-value=1.3e+02 Score=30.74 Aligned_cols=146 Identities=14% Similarity=0.225 Sum_probs=81.6
Q ss_pred EEeeCCeEEEEeec-----CCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294 279 WVSSYNLLLASGSH-----SDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL 353 (466)
Q Consensus 279 ~~~~~~~Lyv~Gg~-----~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~ 353 (466)
.+.-+|.+|+.... .......+++.++|| .+.++--..++.-.==.++.++|+..+|.+=.....|+..++-..
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~ 195 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA 195 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc
Confidence 33456888887665 222235668999999 455444333321111346789999999988888888888877632
Q ss_pred CC----CCCeEEeccCCccccccccccceeEEEEECCEEEEE-eC--CeEEEeEeeeecCCCCCCCCCcccceeeccccC
Q 012294 354 GD----SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-KG--GEIELWSEIVMGSRKSREGGPLEERVFRKNLMG 426 (466)
Q Consensus 354 ~~----~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 426 (466)
.. ...++-... -.+ .+. |..+- -+|.||++ -. +.|.+|+-= . + +.+
T Consensus 196 ~g~~~~~~~~~~~~~----~~G-~PD--G~~vD-adG~lw~~a~~~g~~v~~~~pd-----G----~-----l~~----- 248 (307)
T COG3386 196 TGPIGGRRGFVDFDE----EPG-LPD--GMAVD-ADGNLWVAAVWGGGRVVRFNPD-----G----K-----LLG----- 248 (307)
T ss_pred cCccCCcceEEEccC----CCC-CCC--ceEEe-CCCCEEEecccCCceEEEECCC-----C----c-----EEE-----
Confidence 21 222333322 011 122 22222 24667733 22 267666541 1 1 111
Q ss_pred ccccCCCCceEEEeeec---ceeEEEeecc
Q 012294 427 RVTDMGGSKITNLSFGG---NKMFVTRKGQ 453 (466)
Q Consensus 427 ~~~~~~~~~i~~~~~gg---~r~f~~~~~~ 453 (466)
+.+-.. ...++..||| ++||||-...
T Consensus 249 ~i~lP~-~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 249 EIKLPV-KRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEECCC-CCCccceEeCCCcCEEEEEecCC
Confidence 111222 4689999999 9999997655
No 201
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=69.73 E-value=42 Score=33.76 Aligned_cols=129 Identities=19% Similarity=0.295 Sum_probs=85.2
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV 320 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~ 320 (466)
..+|--||..|-+.++.+..+. ++..+-.. -+|.+..+.- -++|-.||+.+=.++.+..-|.
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s----------~VtSlEvs-~dG~ilTia~-------gssV~Fwdaksf~~lKs~k~P~ 225 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNS----------PVTSLEVS-QDGRILTIAY-------GSSVKFWDAKSFGLLKSYKMPC 225 (334)
T ss_pred CCceEEEEeccCcEEEEEecCC----------CCcceeec-cCCCEEEEec-------CceeEEeccccccceeeccCcc
Confidence 5788999999955554444322 22333333 3455544432 2379999999999999987762
Q ss_pred ccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEE---ECCEEEEE--eCCe
Q 012294 321 DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIEC---HANQVFCG--KGGE 395 (466)
Q Consensus 321 d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~---~~~~lf~~--~~~~ 395 (466)
.+..+.+.++- .+|+.|+.++-+|--|--+-+ .+.. -| ++..++..++ =+|.+|++ .+|.
T Consensus 226 -nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge------Ei~~----~n---kgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 226 -NVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE------EIGS----YN---KGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred -ccccccccCCC-ceEEecCcceEEEEEeccCCc------eeee----cc---cCCCCceEEEEECCCCceeeccCCCce
Confidence 23555677777 889889999999999998855 2444 22 2223443322 26999998 7899
Q ss_pred EEEeEee
Q 012294 396 IELWSEI 402 (466)
Q Consensus 396 ~~v~~~~ 402 (466)
|-+|--.
T Consensus 291 irlWQt~ 297 (334)
T KOG0278|consen 291 IRLWQTT 297 (334)
T ss_pred EEEEEec
Confidence 9999764
No 202
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.12 E-value=16 Score=42.96 Aligned_cols=145 Identities=18% Similarity=0.259 Sum_probs=99.0
Q ss_pred cEEEEecccCCCceeccceeeeeCCCCceeecCCC-----CCceeEEEEECC---eEEE-EecCCCcCCCeeEEEecCC-
Q 012294 182 GVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-----SSTVQAIGSSDK---HLFV-SFESGRRNSNSIMVYDINS- 251 (466)
Q Consensus 182 ~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-----r~~~~Ava~l~~---~IYa-Gg~~g~~~l~sVE~YDp~t- 251 (466)
.|+|-|+ .+|. +-.+|...++ .+-.| |..+.+++-.-+ .|.+ .+++ .+.+|..||..-
T Consensus 175 hILAS~s--~sg~-----~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd---~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 175 HILASGS--PSGR-----AVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD---SAPVIQLWDLRFA 242 (1049)
T ss_pred HHhhccC--CCCC-----ceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecCCC---CCceeEeeccccc
Confidence 4666666 4432 3345555552 44444 333443333222 3555 5443 277999999554
Q ss_pred CCccccc-cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeec
Q 012294 252 LKPVNEI-GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSD 330 (466)
Q Consensus 252 ~~~~~~~-~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~ 330 (466)
.+|+.+. +|++ +..++.|..-+..|.++.|-|+ .|=|||+.|+++|=++-.-++=.-++--++
T Consensus 243 ssP~k~~~~H~~----------GilslsWc~~D~~lllSsgkD~------~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 243 SSPLKILEGHQR----------GILSLSWCPQDPRLLLSSGKDN------RIICWNPNTGEVLGELPAQGNWCFDVQWCP 306 (1049)
T ss_pred CCchhhhccccc----------ceeeeccCCCCchhhhcccCCC------CeeEecCCCceEeeecCCCCcceeeeeecC
Confidence 5555565 6655 5678889989989999888554 689999999999988866566667888899
Q ss_pred CCCceEEEEEeeCceeEeeccccC
Q 012294 331 NLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 331 ~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
.+-.+|.+-..+|.+.+--|....
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCcchhhhheeccceeeeeeecCC
Confidence 999999999999997777666655
No 203
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=68.85 E-value=19 Score=36.20 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=53.1
Q ss_pred eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
-+|.||-+.|.-|. ++|+.||+.|+++..+..=+.+-| .=++...+..||.+-=+++..++-|...++
T Consensus 54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~~l~~~~F-gEGit~~~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSVPLPPRYF-GEGITILGDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp ETTEEEEEECSTTE----EEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEEECCcccc-ceeEEEECCEEEEEEecCCeEEEEccccce
Confidence 47899999997773 489999999999887765443233 236677789999999999999999998876
No 204
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=68.26 E-value=32 Score=35.30 Aligned_cols=99 Identities=21% Similarity=0.395 Sum_probs=71.4
Q ss_pred CCeeEEEecCCCCccccccccc-cccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 241 SNSIMVYDINSLKPVNEIGQNE-IYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~-~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
..++-+||..|+|.+-...-.. +| ...|+++ ...-+|.|+| ++++ .|++-|..++..-=+.++|
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~VY-shamSp~--------a~sHcLiA~g-tr~~-----~VrLCDi~SGs~sH~LsGH 187 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKVY-SHAMSPM--------AMSHCLIAAG-TRDV-----QVRLCDIASGSFSHTLSGH 187 (397)
T ss_pred cceEEEeecccceeeEEeecCceee-hhhcChh--------hhcceEEEEe-cCCC-----cEEEEeccCCcceeeeccc
Confidence 5788999999966544333211 11 1223322 1233455554 4443 5999999999988899999
Q ss_pred cccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
.|-+..+.=++....|..-|+.+|.+-+=|.|++.
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras 222 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS 222 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeeccc
Confidence 88888888889999988899999999999999985
No 205
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=67.03 E-value=1.3e+02 Score=31.71 Aligned_cols=189 Identities=17% Similarity=0.260 Sum_probs=103.3
Q ss_pred CceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCC
Q 012294 218 STVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDIS 296 (466)
Q Consensus 218 ~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~ 296 (466)
-.+.+|+.+..--|+ +.. ..++|-.||..|.-.+-++. +++.|-. +-...-+|.|+|+++
T Consensus 194 h~vS~V~f~P~gd~ilS~s----rD~tik~We~~tg~cv~t~~-----~h~ewvr-----~v~v~~DGti~As~s----- 254 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCS----RDNTIKAWECDTGYCVKTFP-----GHSEWVR-----MVRVNQDGTIIASCS----- 254 (406)
T ss_pred cceeeEEEEecCCeeeecc----cccceeEEecccceeEEecc-----CchHhEE-----EEEecCCeeEEEecC-----
Confidence 345556666544444 321 26788999999943333332 2333432 222347899999998
Q ss_pred cccceEEEEeCCCCeeeeEEcCC---ccccc-----------ceeeecCCCceEEEEEeeCceeEeeccccC------CC
Q 012294 297 KVTGNIKFWDIRSGNVAWEVKDE---VDCFS-----------DVTVSDNLSAIYKVGINSGEVSYMDLRKLG------DS 356 (466)
Q Consensus 297 ~~~~sVe~yDprt~~~vW~~~~~---~d~~~-----------~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~------~~ 356 (466)
...++.+|-..++++-=+..+| ..|++ +.+=+.++..+-..++.|+.+-|-|+..-- ++
T Consensus 255 -~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 255 -NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred -CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 3458999999998443344433 11211 111122334455567789988888776522 25
Q ss_pred CCeEEeccCCccccccccccceeEEEEECCEEEE-EeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCc
Q 012294 357 SEWICLGDGRKMVNGKRKEGFGCKIECHANQVFC-GKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSK 435 (466)
Q Consensus 357 ~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 435 (466)
|.||+ +..++-.|..|+. +.+++|.||+=- . +|+.--. + ...+-
T Consensus 334 dnwVr----------------~~af~p~Gkyi~ScaDDktlrvwdl~-----~------------~~cmk~~-~-ah~hf 378 (406)
T KOG0295|consen 334 DNWVR----------------GVAFSPGGKYILSCADDKTLRVWDLK-----N------------LQCMKTL-E-AHEHF 378 (406)
T ss_pred cceee----------------eeEEcCCCeEEEEEecCCcEEEEEec-----c------------ceeeecc-C-CCcce
Confidence 66663 2223333555554 478899999853 1 1110000 0 23344
Q ss_pred eEEEeeecceeE-EEeeccceEEEecc
Q 012294 436 ITNLSFGGNKMF-VTRKGQQTVEVWQS 461 (466)
Q Consensus 436 i~~~~~gg~r~f-~~~~~~~~~~vw~~ 461 (466)
.+.+.|==+..| ||=.=.|.+.|||.
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeeec
Confidence 555555544444 45566788999985
No 206
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.86 E-value=59 Score=34.17 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=64.8
Q ss_pred cceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccce
Q 012294 299 TGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFG 378 (466)
Q Consensus 299 ~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~ 378 (466)
..+|..||..++.|+-+..+|..=..+++.++.|.-|+ =|+-|+.|-+=||+..-+ +.-.+ ..+..=
T Consensus 313 DktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~-ScaDDktlrvwdl~~~~c------mk~~~------ah~hfv 379 (406)
T KOG0295|consen 313 DKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL-SCADDKTLRVWDLKNLQC------MKTLE------AHEHFV 379 (406)
T ss_pred cceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE-EEecCCcEEEEEecccee------eeccC------CCccee
Confidence 45899999999999999999977779999999999988 688999999999988553 33211 123355
Q ss_pred eEEEEECCEEEEEeC
Q 012294 379 CKIECHANQVFCGKG 393 (466)
Q Consensus 379 ~~~~~~~~~lf~~~~ 393 (466)
..+..|.+..|+..|
T Consensus 380 t~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 380 TSLDFHKTAPYVVTG 394 (406)
T ss_pred EEEecCCCCceEEec
Confidence 667888888888877
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=66.74 E-value=1.5e+02 Score=31.70 Aligned_cols=208 Identities=13% Similarity=0.150 Sum_probs=103.2
Q ss_pred CCceeEEEEECC--eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCC
Q 012294 217 SSTVQAIGSSDK--HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSD 294 (466)
Q Consensus 217 r~~~~Ava~l~~--~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g 294 (466)
|++.-.+++--+ ++|.|+.. .+|..-|.+|-+.+-...+.. + ..+.-.+..++.+|.|.++.-
T Consensus 105 ~SNIF~L~F~~~N~~~~SG~~~-----~~VI~HDiEt~qsi~V~~~~~----~---~~~VY~m~~~P~DN~~~~~t~--- 169 (609)
T KOG4227|consen 105 RSNIFSLEFDLENRFLYSGERW-----GTVIKHDIETKQSIYVANENN----N---RGDVYHMDQHPTDNTLIVVTR--- 169 (609)
T ss_pred ccceEEEEEccCCeeEecCCCc-----ceeEeeecccceeeeeecccC----c---ccceeecccCCCCceEEEEec---
Confidence 565544554433 46655543 355666666622221111110 0 112334455667777766653
Q ss_pred CCcccceEEEEeCCCCe----eeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccc
Q 012294 295 ISKVTGNIKFWDIRSGN----VAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVN 370 (466)
Q Consensus 295 ~~~~~~sVe~yDprt~~----~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~ 370 (466)
.+-|-.||.|... .|--.. .+..|-.+-.-+.--.|..+...-|-..+-|.|+-.+. ++--..++.+.
T Consensus 170 ----~~~V~~~D~Rd~~~~~~~~~~AN-~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---~~~~~~~~~L~ 241 (609)
T KOG4227|consen 170 ----AKLVSFIDNRDRQNPISLVLPAN-SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP---VYQRSMFKGLP 241 (609)
T ss_pred ----CceEEEEeccCCCCCCceeeecC-CCccceeeeecCCCceeEEeccccCCCCceeeccccch---HHhhhccccCc
Confidence 3468888877665 110000 02222222333344444445554555666777765431 22222222211
Q ss_pred cccccc-ceeEEEEECCEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCC-----CCceEEEeeecc
Q 012294 371 GKRKEG-FGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMG-----GSKITNLSFGGN 444 (466)
Q Consensus 371 ~~~~~~-~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-----~~~i~~~~~gg~ 444 (466)
. ...+ .++.-...|+|+.+.|-+---|.-.. . + .|++|=+-.+-. --.|.++-|-||
T Consensus 242 ~-~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~----~--------S----~R~~V~k~D~N~~GY~N~~T~KS~~F~~D 304 (609)
T KOG4227|consen 242 Q-ENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF----I--------S----QRCFVLKSDHNPNGYCNIKTIKSMTFIDD 304 (609)
T ss_pred c-cchhhhheeeCCCCCeehhhhccCCCEEeee----e--------c----ccceeEeccCCCCcceeeeeeeeeeeecc
Confidence 1 0111 45555556677766655433222211 0 0 233333322111 125889999999
Q ss_pred eeEEEeeccceEEEeccCCC
Q 012294 445 KMFVTRKGQQTVEVWQSSSR 464 (466)
Q Consensus 445 r~f~~~~~~~~~~vw~~~~~ 464 (466)
|-.+|-+|.=++-+|.-|..
T Consensus 305 ~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 305 YTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred eeeeccCcccceEEEecCCC
Confidence 99999999999999987754
No 208
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=66.38 E-value=1.7e+02 Score=31.73 Aligned_cols=139 Identities=17% Similarity=0.239 Sum_probs=86.7
Q ss_pred cceEEEEeCCCCeeeeEEcCC---------------------------------c-----ccccc---eeeecCCCceEE
Q 012294 299 TGNIKFWDIRSGNVAWEVKDE---------------------------------V-----DCFSD---VTVSDNLSAIYK 337 (466)
Q Consensus 299 ~~sVe~yDprt~~~vW~~~~~---------------------------------~-----d~~~~---~~v~~~~~~i~~ 337 (466)
..++.+||+||++-+|+.++. . -++.+ .++...+..-|.
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 346888888888888888754 0 01111 133446777788
Q ss_pred EEE-eeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE----CCEEEEE--eCCeEEEeEeeeecCCCCC
Q 012294 338 VGI-NSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH----ANQVFCG--KGGEIELWSEIVMGSRKSR 410 (466)
Q Consensus 338 v~~-~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~----~~~lf~~--~~~~~~v~~~~~~~~~~~~ 410 (466)
+++ ..|+||.=-|.+-. .++. . ..+|-.|.|. +|-+|.+ +++.|-||+=.-.-+.. +
T Consensus 97 ~ag~i~g~lYlWelssG~-------------LL~v-~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~-~ 160 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGI-------------LLNV-L-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD-N 160 (476)
T ss_pred EeecccCcEEEEEecccc-------------HHHH-H-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc-c
Confidence 888 88998888777733 1232 1 2255555554 3555554 88999999987552211 0
Q ss_pred CCCCcccceeeccccCccccCCCCceEEEeeecc----eeEEEeeccceEEEeccCC
Q 012294 411 EGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN----KMFVTRKGQQTVEVWQSSS 463 (466)
Q Consensus 411 ~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~----r~f~~~~~~~~~~vw~~~~ 463 (466)
. -....+++|=+| +=.|+||.+|=. |||-+ .+-+.+-||+-|.
T Consensus 161 ~----~~~~p~~~f~~H-----tlsITDl~ig~Gg~~~rl~Ta-S~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 161 D----HSVKPLHIFSDH-----TLSITDLQIGSGGTNARLYTA-SEDRTIKLWDLSL 207 (476)
T ss_pred C----CCccceeeeccC-----cceeEEEEecCCCccceEEEe-cCCceEEEEEecc
Confidence 0 123346677776 447999988754 67644 5567899998653
No 209
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.08 E-value=56 Score=33.71 Aligned_cols=90 Identities=13% Similarity=0.207 Sum_probs=47.5
Q ss_pred cccCCCCCCCCCcee--eecCCcEEEEcC--CceeeEe---------cCC-CCCC--------CccccceeeeeecccCC
Q 012294 124 LILPLNGRDSPSAIA--TTNYGTLHVSHG--SKITSFD---------WSM-RKKS--------TILTHFTAVDSLLALSP 181 (466)
Q Consensus 124 a~l~~~~R~~~~a~~--a~~~g~lyva~G--G~ve~YD---------W~~-a~m~--------~~R~~~~~v~sl~~l~~ 181 (466)
..|. ..|.....+. ...-|...++.+ |.+..|+ |++ .++. ..-..+++.=+......
T Consensus 106 ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~ 184 (361)
T KOG2445|consen 106 TTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE 184 (361)
T ss_pred EEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccC
Confidence 3455 5555443221 222355554544 5666676 988 6654 11111222212223446
Q ss_pred cEEEEecccCCCceeccceeee--eCCCCceeecCCC
Q 012294 182 GVAAAGATDFSGLQVLDLENGY--VKETLNWENVTRS 216 (466)
Q Consensus 182 ~lYaiGG~~~~g~~~l~svE~y--dp~t~~W~~va~M 216 (466)
.++|+|- ......++.+-.| +-..++|..++.+
T Consensus 185 p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 185 PLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred ceEEEEc--ccCCccccceEEEEecCCcceeeeehhc
Confidence 7889987 4445556666655 6666688777654
No 210
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=65.92 E-value=23 Score=38.62 Aligned_cols=98 Identities=20% Similarity=0.306 Sum_probs=64.9
Q ss_pred CeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc
Q 012294 242 NSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD 321 (466)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d 321 (466)
..|-.||....+|.....++ ..-|+-.++..+.+.+|+|.=| +..-|-.||.++..-+-...- ..
T Consensus 187 G~VtlwDv~g~sp~~~~~~~--------HsAP~~gicfspsne~l~vsVG------~Dkki~~yD~~s~~s~~~l~y-~~ 251 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASEA--------HSAPCRGICFSPSNEALLVSVG------YDKKINIYDIRSQASTDRLTY-SH 251 (673)
T ss_pred CeEEEEeccCCCcccchhhh--------ccCCcCcceecCCccceEEEec------ccceEEEeecccccccceeee-cC
Confidence 46778888774433332221 1113345667789999999888 466899999997764422211 23
Q ss_pred cccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 322 CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 322 ~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
++..++..++|- +.++|.-.|+|++-|||+...
T Consensus 252 Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 252 PLSTVAFSECGT-YLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred CcceeeecCCce-EEEeecCCceEEEEecccCCC
Confidence 556666666654 456777999999999999874
No 211
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=64.99 E-value=94 Score=31.58 Aligned_cols=106 Identities=16% Similarity=0.340 Sum_probs=64.7
Q ss_pred eeEEeeCCeEEEEeecCCCCcccceEEEEeCC-CCeeeeEEcCC-----cccccceeeecCCCceEEEEEeeCceeEeec
Q 012294 277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIR-SGNVAWEVKDE-----VDCFSDVTVSDNLSAIYKVGINSGEVSYMDL 350 (466)
Q Consensus 277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr-t~~~vW~~~~~-----~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dl 350 (466)
+.|++..|.|+|.||. ...|+.|+.. .++ |+.+.. ...+-.++-++.++ ..+.++++.+ +-+
T Consensus 20 ~awhp~~g~ilAscg~------Dk~vriw~~~~~~s--~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t---~~I 87 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGT------DKAVRIWSTSSGDS--WTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDAT---VVI 87 (312)
T ss_pred EEeccCCceEEEeecC------CceEEEEecCCCCc--EEEEEeccccchheeeeeeecCCCc-EEEEeeccce---EEE
Confidence 4677776778888883 4489999988 567 888744 23334556667777 3334446666 333
Q ss_pred cccCCCCCeEEeccCCccccccccccceeEEEEE--CCEEE--EEeCCeEEEeEee
Q 012294 351 RKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH--ANQVF--CGKGGEIELWSEI 402 (466)
Q Consensus 351 r~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~--~~~lf--~~~~~~~~v~~~~ 402 (466)
-.-+ .+.|.|+.- +-+ .+ +-+|=++. .|.+. |+|+.+|=+|-.-
T Consensus 88 w~k~-~~efecv~~----lEG--HE-nEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 88 WKKE-DGEFECVAT----LEG--HE-NEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred eecC-CCceeEEee----eec--cc-cceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 4444 577887765 443 22 33333332 23333 5688888888654
No 212
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=64.26 E-value=50 Score=34.41 Aligned_cols=137 Identities=16% Similarity=0.240 Sum_probs=76.1
Q ss_pred CceeeEecCC-CCCCCccccceeeeeecccC---CcEEEEecccCCCceeccceeeeeCCCC------ceeecCCCCCce
Q 012294 151 SKITSFDWSM-RKKSTILTHFTAVDSLLALS---PGVAAAGATDFSGLQVLDLENGYVKETL------NWENVTRSSSTV 220 (466)
Q Consensus 151 G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l~---~~lYaiGG~~~~g~~~l~svE~ydp~t~------~W~~va~Mr~~~ 220 (466)
|.+..|||.. .........-+.+..+++++ +.....++ .+| ++..||..+. .|+..++-...+
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s--sDG-----~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ 122 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCS--SDG-----TVRLWDIRSQAESARISWTQQSGTPFIC 122 (376)
T ss_pred CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEec--cCC-----eEEEEEeecchhhhheeccCCCCCcceE
Confidence 5677899866 33333333223333333444 23333444 444 3556666544 455443110111
Q ss_pred eEEEE-ECCeEEE-EecCCCcCCCeeEEEecCCCCc-cccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCc
Q 012294 221 QAIGS-SDKHLFV-SFESGRRNSNSIMVYDINSLKP-VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISK 297 (466)
Q Consensus 221 ~Ava~-l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~-~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~ 297 (466)
.+. .++.|++ |-. -.+....|.-||...+|. +..... -..-+.+.++.++.+.-|.++|..||
T Consensus 123 --ld~nck~~ii~~GtE-~~~s~A~v~lwDvR~~qq~l~~~~e--------SH~DDVT~lrFHP~~pnlLlSGSvDG--- 188 (376)
T KOG1188|consen 123 --LDLNCKKNIIACGTE-LTRSDASVVLWDVRSEQQLLRQLNE--------SHNDDVTQLRFHPSDPNLLLSGSVDG--- 188 (376)
T ss_pred --eeccCcCCeEEeccc-cccCceEEEEEEeccccchhhhhhh--------hccCcceeEEecCCCCCeEEeecccc---
Confidence 111 1446888 644 233478999999999553 222221 01123678889999999999998555
Q ss_pred ccceEEEEeCCCCe
Q 012294 298 VTGNIKFWDIRSGN 311 (466)
Q Consensus 298 ~~~sVe~yDprt~~ 311 (466)
.|-+||...++
T Consensus 189 ---LvnlfD~~~d~ 199 (376)
T KOG1188|consen 189 ---LVNLFDTKKDN 199 (376)
T ss_pred ---eEEeeecCCCc
Confidence 79999987773
No 213
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=63.80 E-value=47 Score=33.40 Aligned_cols=190 Identities=17% Similarity=0.309 Sum_probs=105.6
Q ss_pred eeEEEEECCeEEE--EecCCCcCCCeeEEEecCC-CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCC
Q 012294 220 VQAIGSSDKHLFV--SFESGRRNSNSIMVYDINS-LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDIS 296 (466)
Q Consensus 220 ~~Ava~l~~~IYa--Gg~~g~~~l~sVE~YDp~t-~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~ 296 (466)
+-|+++..+.=|. ||. .+-+-+||.+. -.|-.|++. . ..+.-++-|+-.+.+|..+ -
T Consensus 103 vk~~af~~ds~~lltgg~-----ekllrvfdln~p~App~E~~g------h---tg~Ir~v~wc~eD~~iLSS-a----- 162 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQ-----EKLLRVFDLNRPKAPPKEISG------H---TGGIRTVLWCHEDKCILSS-A----- 162 (334)
T ss_pred eeeEEecccchhhhccch-----HHHhhhhhccCCCCCchhhcC------C---CCcceeEEEeccCceEEee-c-----
Confidence 3446666665443 553 45566788766 111111111 0 0112245577778888776 3
Q ss_pred cccceEEEEeCCCCeeeeE--EcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccc
Q 012294 297 KVTGNIKFWDIRSGNVAWE--VKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRK 374 (466)
Q Consensus 297 ~~~~sVe~yDprt~~~vW~--~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~ 374 (466)
+..+|++||-||++.|-+ +.-|+ ..+-++.+|..| .-++-+.+-|-|-.+++- +++..-+-|.
T Consensus 163 -dd~tVRLWD~rTgt~v~sL~~~s~V---tSlEvs~dG~il--Tia~gssV~Fwdaksf~~------lKs~k~P~nV--- 227 (334)
T KOG0278|consen 163 -DDKTVRLWDHRTGTEVQSLEFNSPV---TSLEVSQDGRIL--TIAYGSSVKFWDAKSFGL------LKSYKMPCNV--- 227 (334)
T ss_pred -cCCceEEEEeccCcEEEEEecCCCC---cceeeccCCCEE--EEecCceeEEeccccccc------eeeccCcccc---
Confidence 456899999999998854 44444 677788888872 334666777777777773 4442111111
Q ss_pred ccceeEEEEECCEEEEEeCCeEEEeEeeee-cCCCCCCCCCcccceeeccccCccccCCCCceEEEeee-cceeEEEeec
Q 012294 375 EGFGCKIECHANQVFCGKGGEIELWSEIVM-GSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG-GNKMFVTRKG 452 (466)
Q Consensus 375 ~~~~~~~~~~~~~lf~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g-g~r~f~~~~~ 452 (466)
....|+= +..+|+..|.+.-|+-==-. +.|. .. |-+ -.-|.|..+.|- +.-++++=+|
T Consensus 228 --~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi-------~~--~nk--------gh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 228 --ESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEI-------GS--YNK--------GHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred --ccccccC-CCceEEecCcceEEEEEeccCCcee-------ee--ccc--------CCCCceEEEEECCCCceeeccCC
Confidence 1112222 23677777776655432100 1111 11 101 134566666654 3357888899
Q ss_pred cceEEEeccCCC
Q 012294 453 QQTVEVWQSSSR 464 (466)
Q Consensus 453 ~~~~~vw~~~~~ 464 (466)
--.|-+||+-+.
T Consensus 288 DGTirlWQt~~~ 299 (334)
T KOG0278|consen 288 DGTIRLWQTTPG 299 (334)
T ss_pred CceEEEEEecCC
Confidence 999999998653
No 214
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=63.29 E-value=13 Score=37.96 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=50.5
Q ss_pred eeCCeEEEEeecCCCCcccceEEEEeCCCC-eee-eEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 281 SSYNLLLASGSHSDISKVTGNIKFWDIRSG-NVA-WEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 281 ~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~-~~v-W~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
+...-|+++|.+|| +|++|+.+.. ..+ .....+.-+..++.-++|++.+| .++.++.+=+-||-+.-
T Consensus 37 P~~~~~~~A~SWD~------tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf-~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 37 PQADNLLAAGSWDG------TVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVF-SGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccCceEEecccCC------ceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEE-eeccCCceEEEEccCCC
Confidence 44566778888766 7999998874 433 33444455669999999999988 78889999899988753
No 215
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=62.46 E-value=72 Score=34.37 Aligned_cols=144 Identities=19% Similarity=0.368 Sum_probs=94.4
Q ss_pred eeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeE
Q 012294 281 SSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWI 360 (466)
Q Consensus 281 ~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~ 360 (466)
..+|..+|.|| ....|-.||++|.+.|-.+.+|-+.++..++...-+-+| .+++|..+-+-.+--++-
T Consensus 211 S~Dgkylatgg------~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~ly-s~s~Drsvkvw~~~~~s~----- 278 (479)
T KOG0299|consen 211 SSDGKYLATGG------RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELY-SASADRSVKVWSIDQLSY----- 278 (479)
T ss_pred cCCCcEEEecC------CCceEEEecCcccchhhcccccccceeeeeeecCcccee-eeecCCceEEEehhHhHH-----
Confidence 46888888888 344799999999999999999988899999999888888 677777766555444331
Q ss_pred EeccCCcccccccccc-ceeEEEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEE
Q 012294 361 CLGDGRKMVNGKRKEG-FGCKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITN 438 (466)
Q Consensus 361 ~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~ 438 (466)
+.. +-+ ...+ -+..+-.-.--+=|. |+.++-||-=+ +. +.-+||. ..|.|--
T Consensus 279 -vet----lyG-Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~----ee-------sqlifrg---------~~~sidc 332 (479)
T KOG0299|consen 279 -VET----LYG-HQDGVLGIDALSRERCVTVGGRDRTVRLWKIP----EE-------SQLIFRG---------GEGSIDC 332 (479)
T ss_pred -HHH----HhC-CccceeeechhcccceEEeccccceeEEEecc----cc-------ceeeeeC---------CCCCeee
Confidence 111 111 0110 111111111122233 78899999876 33 3334675 4667777
Q ss_pred EeeecceeEEEeeccceEEEeccC
Q 012294 439 LSFGGNKMFVTRKGQQTVEVWQSS 462 (466)
Q Consensus 439 ~~~gg~r~f~~~~~~~~~~vw~~~ 462 (466)
.+|=-+-=||+=.|--.|-.|...
T Consensus 333 v~~In~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 333 VAFINDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred EEEecccceeeccCCceEEEeeec
Confidence 777777788888888888888653
No 216
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=61.77 E-value=1.9e+02 Score=31.77 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=19.8
Q ss_pred eeeecccCCcEEEEecccCCCceecccee
Q 012294 173 VDSLLALSPGVAAAGATDFSGLQVLDLEN 201 (466)
Q Consensus 173 v~sl~~l~~~lYaiGG~~~~g~~~l~svE 201 (466)
+.|...+.+++|-+.- ++|...+-|+.
T Consensus 228 vS~PmIV~~RvYFlsD--~eG~GnlYSvd 254 (668)
T COG4946 228 VSSPMIVGERVYFLSD--HEGVGNLYSVD 254 (668)
T ss_pred cCCceEEcceEEEEec--ccCccceEEec
Confidence 4455558999999977 88887766654
No 217
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=60.60 E-value=84 Score=35.79 Aligned_cols=137 Identities=16% Similarity=0.236 Sum_probs=83.2
Q ss_pred cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC-CCceeEEEEECC-eEEE--EecCCCcCCCeeEEEecCCCCc
Q 012294 179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS-SSTVQAIGSSDK-HLFV--SFESGRRNSNSIMVYDINSLKP 254 (466)
Q Consensus 179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M-r~~~~Ava~l~~-~IYa--Gg~~g~~~l~sVE~YDp~t~~~ 254 (466)
=+++|+|-|+ .|. ++..++.+.+.-..+-+= |+++-.|-+..+ ++-| ++ ..+|-.|..++.+.
T Consensus 473 ~ndkLiAT~S--qDk-----taKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg------D~TvKIW~is~fSC 539 (775)
T KOG0319|consen 473 PNDKLIATGS--QDK-----TAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG------DKTVKIWSISTFSC 539 (775)
T ss_pred CCCceEEecc--ccc-----ceeeecccCceEEEEeeCCccceEEEEeccccceeEeccC------CceEEEEEecccee
Confidence 4578888888 553 233333332222111111 455543444433 3444 33 46788888888665
Q ss_pred cccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCc
Q 012294 255 VNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSA 334 (466)
Q Consensus 255 ~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~ 334 (466)
..++.- ... +..+...+ -++.=++++|.|| -|.+||..+++|.-+.-+|.|+.=.+.+.++..+
T Consensus 540 lkT~eG------H~~---aVlra~F~-~~~~qliS~~adG------liKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~ 603 (775)
T KOG0319|consen 540 LKTFEG------HTS---AVLRASFI-RNGKQLISAGADG------LIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDM 603 (775)
T ss_pred eeeecC------ccc---eeEeeeee-eCCcEEEeccCCC------cEEEEeccchhhhhhhhhccceeEEEeecCccce
Confidence 555542 221 23444454 4666677777666 5999999999999999999888888888888885
Q ss_pred eEEEEEeeCce
Q 012294 335 IYKVGINSGEV 345 (466)
Q Consensus 335 i~~v~~~~g~l 345 (466)
++ -|+-||.+
T Consensus 604 ~~-tgg~Dg~i 613 (775)
T KOG0319|consen 604 FV-TGGGDGRI 613 (775)
T ss_pred eE-ecCCCeEE
Confidence 44 44555543
No 218
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=60.44 E-value=1.9e+02 Score=30.29 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=77.4
Q ss_pred EECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEE
Q 012294 225 SSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIK 303 (466)
Q Consensus 225 ~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe 303 (466)
..++++|+ ..+ -+.|.++|..+.+.++.+... + .|-.+.+-+.++.+||+-... ..++|-
T Consensus 83 ~~~~~vyv~~~~-----~~~v~vid~~~~~~~~~~~vG-------~---~P~~~~~~~~~~~vYV~n~~~----~~~~vs 143 (381)
T COG3391 83 PAGNKVYVTTGD-----SNTVSVIDTATNTVLGSIPVG-------L---GPVGLAVDPDGKYVYVANAGN----GNNTVS 143 (381)
T ss_pred CCCCeEEEecCC-----CCeEEEEcCcccceeeEeeec-------c---CCceEEECCCCCEEEEEeccc----CCceEE
Confidence 35667999 333 578999998775544444431 1 234445556788999987732 256899
Q ss_pred EEeCCCCeeeeEEcCCc-ccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 304 FWDIRSGNVAWEVKDEV-DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 304 ~yDprt~~~vW~~~~~~-d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
..|+.++++.-+ ...+ ++ .++.+++++..+|+.-.-++.|.+.|.....
T Consensus 144 vid~~t~~~~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 144 VIDAATNKVTAT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred EEeCCCCeEEEE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence 999999987644 2223 34 7889999999999888889999999976654
No 219
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=59.73 E-value=4.6 Score=41.48 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=59.0
Q ss_pred eEEEEeHHHhhccCCCCccccccC-----C---Cc--eeEcCCchhHHHHhcccccCccccCCCCcChHHHHHhhccccc
Q 012294 32 QIFQTTKQTLALAGPKSLLSKLAD-----S---TH--RFIDRDPELFSILLSLLRTGNLPSKAKAFDIEDLIEESKFYNI 101 (466)
Q Consensus 32 ~~F~t~~~tL~~~~p~s~f~~mf~-----~---~~--~fiDRDp~~F~~IL~ylrtG~l~~~~~~~~~~~Ll~EA~f~~l 101 (466)
+.|.+.+..|.+ .-.||...++ + ++ +-+--|-.+|+-+++|.....-.++ ..|+-.+|--++|+|+
T Consensus 14 rdF~C~~~lL~~--~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~--~~NvvsIliSS~FL~M 89 (317)
T PF11822_consen 14 RDFTCPRDLLVS--EMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLT--PSNVVSILISSEFLQM 89 (317)
T ss_pred eeeeccHHHHHH--hhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCC--cCcEEEeEehhhhhcc
Confidence 579999999998 4569999883 2 23 6777899999999999998554444 3577788889999999
Q ss_pred hhhHHhh
Q 012294 102 ESLLINS 108 (466)
Q Consensus 102 ~~l~~~~ 108 (466)
++|++.|
T Consensus 90 ~~Lve~c 96 (317)
T PF11822_consen 90 ESLVEEC 96 (317)
T ss_pred HHHHHHH
Confidence 9999987
No 220
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=59.53 E-value=57 Score=35.71 Aligned_cols=110 Identities=18% Similarity=0.324 Sum_probs=64.9
Q ss_pred eeEEEEECC--eEEEEecCCCcCCCeeEEEecCC---CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCC
Q 012294 220 VQAIGSSDK--HLFVSFESGRRNSNSIMVYDINS---LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSD 294 (466)
Q Consensus 220 ~~Ava~l~~--~IYaGg~~g~~~l~sVE~YDp~t---~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g 294 (466)
++|++..+. ++|.||. .+|-+||... -.|++.++-+. .+ .=++..-+--+++-..+||+
T Consensus 422 VcAvtIS~~trhVyTgGk------gcVKVWdis~pg~k~PvsqLdcl~---rd-----nyiRSckL~pdgrtLivGGe-- 485 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGGK------GCVKVWDISQPGNKSPVSQLDCLN---RD-----NYIRSCKLLPDGRTLIVGGE-- 485 (705)
T ss_pred EEEEEecCCcceeEecCC------CeEEEeeccCCCCCCccccccccC---cc-----cceeeeEecCCCceEEeccc--
Confidence 454555443 5888665 3688999876 33444443321 00 01222333467777888883
Q ss_pred CCcccceEEEEeCCCCeeeeEEcCCccccc----ceeeecCCCceEEEEEeeCceeEeeccc
Q 012294 295 ISKVTGNIKFWDIRSGNVAWEVKDEVDCFS----DVTVSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 295 ~~~~~~sVe~yDprt~~~vW~~~~~~d~~~----~~~v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
..++.+||..+-+ -..++..++-+ .+++++|....| .|-.+|++.+=||+.
T Consensus 486 ----astlsiWDLAapT--prikaeltssapaCyALa~spDakvcF-sccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 486 ----ASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDAKVCF-SCCSDGNIAVWDLHN 540 (705)
T ss_pred ----cceeeeeeccCCC--cchhhhcCCcchhhhhhhcCCccceee-eeccCCcEEEEEccc
Confidence 5589999987765 33332222211 235677777767 456789999999986
No 221
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=58.78 E-value=1.7e+02 Score=32.25 Aligned_cols=147 Identities=19% Similarity=0.240 Sum_probs=74.9
Q ss_pred CCCCceeeecCCcEEEEcCC---ceeeEecCC------CCCCCccccceeeeeecccCCcEEEEecccCCCceeccceee
Q 012294 132 DSPSAIATTNYGTLHVSHGS---KITSFDWSM------RKKSTILTHFTAVDSLLALSPGVAAAGATDFSGLQVLDLENG 202 (466)
Q Consensus 132 ~~~~a~~a~~~g~lyva~GG---~ve~YDW~~------a~m~~~R~~~~~v~sl~~l~~~lYaiGG~~~~g~~~l~svE~ 202 (466)
....+++..+++... |+|| .++.|.=.- +.....| +.++++++-++.-|.+.| +..+.-.+-+++.
T Consensus 444 y~~s~vAv~~~~~~v-aVGG~Dgkvhvysl~g~~l~ee~~~~~h~---a~iT~vaySpd~~yla~~-Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 444 YESSAVAVSPDGSEV-AVGGQDGKVHVYSLSGDELKEEAKLLEHR---AAITDVAYSPDGAYLAAG-DASRKVVLYDVAS 518 (603)
T ss_pred cccceEEEcCCCCEE-EEecccceEEEEEecCCcccceeeeeccc---CCceEEEECCCCcEEEEe-ccCCcEEEEEccc
Confidence 334444555666666 5665 466776211 1122222 445555566555555555 1445545555555
Q ss_pred eeCCCCceeecCCCCCceeEEEEE-CCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEE
Q 012294 203 YVKETLNWENVTRSSSTVQAIGSS-DKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWV 280 (466)
Q Consensus 203 ydp~t~~W~~va~Mr~~~~Ava~l-~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~ 280 (466)
+-+.++.|..... ...+++-. ++++.| |.- ..+|.+|+.+. ++.+-.+- + ........+.|+
T Consensus 519 ~~~~~~~w~FHta---kI~~~aWsP~n~~vATGSl-----Dt~Viiysv~k-----P~~~i~ik--n-AH~~gVn~v~wl 582 (603)
T KOG0318|consen 519 REVKTNRWAFHTA---KINCVAWSPNNKLVATGSL-----DTNVIIYSVKK-----PAKHIIIK--N-AHLGGVNSVAWL 582 (603)
T ss_pred Cceecceeeeeee---eEEEEEeCCCceEEEeccc-----cceEEEEEccC-----hhhheEec--c-ccccCceeEEEe
Confidence 5558888886532 22224433 456777 533 46788998877 12220000 1 111123455665
Q ss_pred eeCCeEEEEeecCCCCcccceEEEEeC
Q 012294 281 SSYNLLLASGSHSDISKVTGNIKFWDI 307 (466)
Q Consensus 281 ~~~~~Lyv~Gg~~g~~~~~~sVe~yDp 307 (466)
++.=.|+.|+| ..|.+|+.
T Consensus 583 --de~tvvSsG~D------a~iK~W~v 601 (603)
T KOG0318|consen 583 --DESTVVSSGQD------ANIKVWNV 601 (603)
T ss_pred --cCceEEeccCc------ceeEEecc
Confidence 44455666643 36888764
No 222
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=57.60 E-value=2.3e+02 Score=29.48 Aligned_cols=150 Identities=16% Similarity=0.282 Sum_probs=0.0
Q ss_pred cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCC--ceEEEEEeeCceeEeecc
Q 012294 274 ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLS--AIYKVGINSGEVSYMDLR 351 (466)
Q Consensus 274 ~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~--~i~~v~~~~g~l~~~dlr 351 (466)
...+..+.+++.-.|+||.|. +|..||-+++.-.=....|.+.+-.+-.....+ .|- -|..||.+.+-|
T Consensus 43 ~~sitavAVs~~~~aSGssDe------tI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~-- 113 (362)
T KOG0294|consen 43 AGSITALAVSGPYVASGSSDE------TIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWR-- 113 (362)
T ss_pred ccceeEEEecceeEeccCCCC------cEEEEeccchhhhcceeccccceEEEEecCCcchhhee-eecCCCcEEEEE--
Q ss_pred ccCCCCCeEEeccCCcccccccccc-ceeEEEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccc
Q 012294 352 KLGDSSEWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVT 429 (466)
Q Consensus 352 ~~~~~~~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 429 (466)
.++|+++.. .+. .+.. ....||=-+.--..+ +++.+-.|.=| +. |+-|+=+.+
T Consensus 114 ----~~~W~~~~s----lK~-H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV----~G------------r~a~v~~L~ 168 (362)
T KOG0294|consen 114 ----VGSWELLKS----LKA-HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV----RG------------RVAFVLNLK 168 (362)
T ss_pred ----cCCeEEeee----ecc-cccccceeEecCCCceEEEEcCCceeeeehhh----cC------------ccceeeccC
Q ss_pred cCCCCceEEEeeecceeEEEeeccceEEEecc
Q 012294 430 DMGGSKITNLSFGGNKMFVTRKGQQTVEVWQS 461 (466)
Q Consensus 430 ~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~ 461 (466)
.--- +..|.-=||+..|. -.+.|+|||+
T Consensus 169 ~~at--~v~w~~~Gd~F~v~--~~~~i~i~q~ 196 (362)
T KOG0294|consen 169 NKAT--LVSWSPQGDHFVVS--GRNKIDIYQL 196 (362)
T ss_pred Ccce--eeEEcCCCCEEEEE--eccEEEEEec
No 223
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=56.32 E-value=21 Score=36.82 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=47.7
Q ss_pred CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEe
Q 012294 227 DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWD 306 (466)
Q Consensus 227 ~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yD 306 (466)
++.|.+|-+ ...+-.||.+|-|.-...+-+ ++-+ ++..-.....++.|||.|..|| .|.+||
T Consensus 228 GefllvgTd-----Hp~~rlYdv~T~QcfvsanPd-----~qht--~ai~~V~Ys~t~~lYvTaSkDG------~IklwD 289 (430)
T KOG0640|consen 228 GEFLLVGTD-----HPTLRLYDVNTYQCFVSANPD-----DQHT--GAITQVRYSSTGSLYVTASKDG------AIKLWD 289 (430)
T ss_pred CceEEEecC-----CCceeEEeccceeEeeecCcc-----cccc--cceeEEEecCCccEEEEeccCC------cEEeec
Confidence 445666543 578889999995544333321 1111 1222234457999999999766 699999
Q ss_pred CCCCeeeeEEc
Q 012294 307 IRSGNVAWEVK 317 (466)
Q Consensus 307 prt~~~vW~~~ 317 (466)
-.+++||-++.
T Consensus 290 GVS~rCv~t~~ 300 (430)
T KOG0640|consen 290 GVSNRCVRTIG 300 (430)
T ss_pred cccHHHHHHHH
Confidence 99999887773
No 224
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=55.37 E-value=2.5e+02 Score=28.84 Aligned_cols=128 Identities=14% Similarity=0.201 Sum_probs=72.3
Q ss_pred eCCCCceeec-CCC--CCceeE-EEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCc-----
Q 012294 204 VKETLNWENV-TRS--SSTVQA-IGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPA----- 274 (466)
Q Consensus 204 dp~t~~W~~v-a~M--r~~~~A-va~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~----- 274 (466)
.--+..|... ..+ ...... .+..+++||++..+| .+-.+|+++ ++ -.|+.-..
T Consensus 41 ~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~~G-----~i~A~d~~~-------g~------~~W~~~~~~~~~~ 102 (370)
T COG1520 41 TSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDG-----NIFALNPDT-------GL------VKWSYPLLGAVAQ 102 (370)
T ss_pred cCcceeeeeecccCccceEeccccEeeCCeEEEecCCC-----cEEEEeCCC-------Cc------EEecccCcCccee
Confidence 3355678532 333 222232 277889999963333 688999999 33 23533222
Q ss_pred ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc-ccccceeeecCCCceEEEEEeeCceeEeecccc
Q 012294 275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV-DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKL 353 (466)
Q Consensus 275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~-d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~ 353 (466)
+.-+....+|.||+... ++.+-++|+++++.+|+...+. -.++.. .-.....+|... .+|.|+.+|=.+
T Consensus 103 ~~~~~~~~~G~i~~g~~-------~g~~y~ld~~~G~~~W~~~~~~~~~~~~~-~v~~~~~v~~~s-~~g~~~al~~~t- 172 (370)
T COG1520 103 LSGPILGSDGKIYVGSW-------DGKLYALDASTGTLVWSRNVGGSPYYASP-PVVGDGTVYVGT-DDGHLYALNADT- 172 (370)
T ss_pred ccCceEEeCCeEEEecc-------cceEEEEECCCCcEEEEEecCCCeEEecC-cEEcCcEEEEec-CCCeEEEEEccC-
Confidence 22233445788888765 3379999999999999997665 111211 112334444222 457766655443
Q ss_pred CCCCCeE
Q 012294 354 GDSSEWI 360 (466)
Q Consensus 354 ~~~~~W~ 360 (466)
+ ...|.
T Consensus 173 G-~~~W~ 178 (370)
T COG1520 173 G-TLKWT 178 (370)
T ss_pred C-cEEEE
Confidence 2 34565
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=54.59 E-value=45 Score=31.45 Aligned_cols=75 Identities=19% Similarity=0.410 Sum_probs=45.7
Q ss_pred CeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc
Q 012294 242 NSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD 321 (466)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d 321 (466)
..|..||.+ .+++.+++++. ...+.|.+. |.+.|+||+++ ..+.|++||.++.+.+=+...+
T Consensus 83 ~~v~lyd~~-~~~i~~~~~~~-----------~n~i~wsP~-G~~l~~~g~~n---~~G~l~~wd~~~~~~i~~~~~~-- 144 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIFSFGTQP-----------RNTISWSPD-GRFLVLAGFGN---LNGDLEFWDVRKKKKISTFEHS-- 144 (194)
T ss_pred cccEEEcCc-ccEeEeecCCC-----------ceEEEECCC-CCEEEEEEccC---CCcEEEEEECCCCEEeeccccC--
Confidence 478999996 45555554422 123567664 55556666543 3578999999988876544322
Q ss_pred cccceeeecCCCc
Q 012294 322 CFSDVTVSDNLSA 334 (466)
Q Consensus 322 ~~~~~~v~~~~~~ 334 (466)
+..++.-+++|..
T Consensus 145 ~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 145 DATDVEWSPDGRY 157 (194)
T ss_pred cEEEEEEcCCCCE
Confidence 2355666666666
No 226
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=53.36 E-value=9.9 Score=38.34 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=54.1
Q ss_pred CeEEEEECCeEEEEeHHHhhccCCCCccccccCC--Cc--------eeEcCCchhHHHHhcccccCccccCCC-CcChHH
Q 012294 23 NIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS--TH--------RFIDRDPELFSILLSLLRTGNLPSKAK-AFDIED 91 (466)
Q Consensus 23 ~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~--~~--------~fiDRDp~~F~~IL~ylrtG~l~~~~~-~~~~~~ 91 (466)
.++.|-.--+.|.+||..|+++.| +|.-+.+. ++ -|...|-.+|+.+|.||+||+.-.... ..|...
T Consensus 131 ~dldiiFkeTcfpahRA~laaRCp--ffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~di 208 (401)
T KOG2838|consen 131 GDLDIIFKETCFPAHRAFLAARCP--FFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNSDI 208 (401)
T ss_pred ccceeeeeeccchHHHHHHHhhCc--chhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchHHH
Confidence 456677778899999999999766 89888875 11 277788899999999999999764211 134444
Q ss_pred HHHhhcccc
Q 012294 92 LIEESKFYN 100 (466)
Q Consensus 92 Ll~EA~f~~ 100 (466)
|.+-+.-||
T Consensus 209 L~QL~edFG 217 (401)
T KOG2838|consen 209 LEQLCEDFG 217 (401)
T ss_pred HHHHHHhhC
Confidence 444444444
No 227
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=52.40 E-value=81 Score=32.47 Aligned_cols=97 Identities=20% Similarity=0.311 Sum_probs=53.0
Q ss_pred eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcc-eeeEEeeCC-eEEEEeecCCCCcccceEEEEe
Q 012294 229 HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPAT-KLRWVSSYN-LLLASGSHSDISKVTGNIKFWD 306 (466)
Q Consensus 229 ~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~-k~~~~~~~~-~Lyv~Gg~~g~~~~~~sVe~yD 306 (466)
++|+|+. .+++-.||..+.|+..-=-| + +|. .+.|+...+ -+.+.|.+ ..++..||
T Consensus 86 kVf~g~~-----Dk~~k~wDL~S~Q~~~v~~H------d-----~pvkt~~wv~~~~~~cl~TGSW------DKTlKfWD 143 (347)
T KOG0647|consen 86 KVFSGGC-----DKQAKLWDLASGQVSQVAAH------D-----APVKTCHWVPGMNYQCLVTGSW------DKTLKFWD 143 (347)
T ss_pred eEEeecc-----CCceEEEEccCCCeeeeeec------c-----cceeEEEEecCCCcceeEeccc------ccceeecc
Confidence 6888543 46788999999432222111 0 122 345664433 23455554 44899999
Q ss_pred CCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeecc
Q 012294 307 IRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLR 351 (466)
Q Consensus 307 prt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr 351 (466)
+|+-+.|=+..=|..+-+ ++....++- |+-.+-.|.+..|+
T Consensus 144 ~R~~~pv~t~~LPeRvYa---~Dv~~pm~v-Vata~r~i~vynL~ 184 (347)
T KOG0647|consen 144 TRSSNPVATLQLPERVYA---ADVLYPMAV-VATAERHIAVYNLE 184 (347)
T ss_pred cCCCCeeeeeeccceeee---hhccCceeE-EEecCCcEEEEEcC
Confidence 999998877765542222 344444432 33333344445454
No 228
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=51.13 E-value=1.4e+02 Score=30.31 Aligned_cols=108 Identities=21% Similarity=0.366 Sum_probs=63.3
Q ss_pred eeeEEeeC-CeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 276 KLRWVSSY-NLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 276 k~~~~~~~-~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
.+.|.+-+ ++++++.| ..+|++||.|+++++=+..-.+.- --++-++++.. +.|+.+++.|-++|-|+-.
T Consensus 69 ql~w~~~~~d~~atas~-------dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~-~~~~~kdD~it~id~r~~~ 139 (313)
T KOG1407|consen 69 QLCWDPKHPDLFATASG-------DKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEY-IAVGNKDDRITFIDARTYK 139 (313)
T ss_pred hheeCCCCCcceEEecC-------CceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCE-EEEecCcccEEEEEecccc
Confidence 44565544 44444444 337999999999977555433211 12345566666 3467799999999999865
Q ss_pred CCCCeEEeccCCccccccccccceeEEEEECCEEEEE-eC-CeEEEeEeeee
Q 012294 355 DSSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCG-KG-GEIELWSEIVM 404 (466)
Q Consensus 355 ~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~-~~-~~~~v~~~~~~ 404 (466)
. +...+ |+ .+...+.-. ..|.+|.. .| |.||+-|=|++
T Consensus 140 ~------~~~~~--~~---~e~ne~~w~-~~nd~Fflt~GlG~v~ILsypsL 179 (313)
T KOG1407|consen 140 I------VNEEQ--FK---FEVNEISWN-NSNDLFFLTNGLGCVEILSYPSL 179 (313)
T ss_pred e------eehhc--cc---ceeeeeeec-CCCCEEEEecCCceEEEEecccc
Confidence 2 11111 22 121333333 34555554 45 79999998765
No 229
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=50.23 E-value=50 Score=36.20 Aligned_cols=110 Identities=10% Similarity=0.140 Sum_probs=69.6
Q ss_pred eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC---ccccc---ceeeecCCCceEEEEEeeCceeEeecc
Q 012294 278 RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE---VDCFS---DVTVSDNLSAIYKVGINSGEVSYMDLR 351 (466)
Q Consensus 278 ~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~---~d~~~---~~~v~~~~~~i~~v~~~~g~l~~~dlr 351 (466)
.|++.+.-.|...++|| +++.||...-+-+-+..-+ +-.|. .++-++++.. ++.|..+|.+=+=|++
T Consensus 275 ~whP~~k~~FlT~s~Dg------tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~ 347 (641)
T KOG0772|consen 275 CWHPDNKEEFLTCSYDG------TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKG 347 (641)
T ss_pred ccccCcccceEEecCCC------cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecC
Confidence 36666666677777554 7999997654322222222 22233 3344556666 6778899998888888
Q ss_pred ccCCCCCeEEeccCCccccccccc-cceeEEEEECCEEEEEeC--CeEEEeEe
Q 012294 352 KLGDSSEWICLGDGRKMVNGKRKE-GFGCKIECHANQVFCGKG--GEIELWSE 401 (466)
Q Consensus 352 ~~~~~~~W~~~~~~~~~m~~~~~~-~~~~~~~~~~~~lf~~~~--~~~~v~~~ 401 (466)
+.. .+|=.++.. ... ++ +-.|..-.|+|+..++|+ +.+.||.=
T Consensus 348 ~~~-v~p~~~vk~----AH~--~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 348 SRT-VRPVMKVKD----AHL--PGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred Ccc-cccceEeee----ccC--CCCceeEEEeccccchhhhccCCCceeeeec
Confidence 877 355455554 221 21 155666778999999986 57889974
No 230
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=50.22 E-value=4.6e+02 Score=30.65 Aligned_cols=103 Identities=14% Similarity=0.262 Sum_probs=71.8
Q ss_pred CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeE--EEEeecCCCCcccceEEE
Q 012294 227 DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLL--LASGSHSDISKVTGNIKF 304 (466)
Q Consensus 227 ~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~L--yv~Gg~~g~~~~~~sVe~ 304 (466)
=|+|-+|... ..+..||..|.+.+.+..++. .+-+. +.-...| .|+|- .+|.|=.
T Consensus 172 LNKIvvGs~~-----G~lql~Nvrt~K~v~~f~~~~----s~IT~--------ieqsPaLDVVaiG~------~~G~Vii 228 (910)
T KOG1539|consen 172 LNKIVVGSSQ-----GRLQLWNVRTGKVVYTFQEFF----SRITA--------IEQSPALDVVAIGL------ENGTVII 228 (910)
T ss_pred eeeEEEeecC-----CcEEEEEeccCcEEEEecccc----cceeE--------eccCCcceEEEEec------cCceEEE
Confidence 3567776553 456889999977776666633 22121 1111222 23444 3668999
Q ss_pred EeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294 305 WDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 305 yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
+|.+.|++.-++.-..-++..+...-||..|-+++..+|++++=||..
T Consensus 229 fNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~ 276 (910)
T KOG1539|consen 229 FNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK 276 (910)
T ss_pred EEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence 999999999888754336677888899999999999999999999965
No 231
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=50.03 E-value=34 Score=36.63 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=51.4
Q ss_pred eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
.+.+ -+|+||+.|--|| -|..||..+.+.|=.+-+|.-++-.+..++.|=. .++...+|++..-|||++..
T Consensus 353 ~~fH-pDgLifgtgt~d~------~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~-Lat~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 353 AAFH-PDGLIFGTGTPDG------VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYW-LATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred eeEc-CCceEEeccCCCc------eEEEEEcCCccccccCCCCCCceeEEEeccCceE-EEEEecCCeEEEEEehhhcc
Confidence 3444 4899999987444 6999999998877777667655555566655544 34556777799999999984
No 232
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=49.52 E-value=46 Score=38.85 Aligned_cols=93 Identities=22% Similarity=0.189 Sum_probs=65.9
Q ss_pred CeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcc
Q 012294 242 NSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVD 321 (466)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d 321 (466)
+-+-.||..+.+ + ..=..+.+.+...+.-+|+++-+|-. .|+|-+-||++.+++-++..|.+
T Consensus 157 ~~li~~Dl~~~~---e---------~r~~~v~a~~v~imR~Nnr~lf~G~t------~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 157 EKLIHIDLNTEK---E---------TRTTNVSASGVTIMRYNNRNLFCGDT------RGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred hheeeeecccce---e---------eeeeeccCCceEEEEecCcEEEeecc------cceEEeecCCcCceeeeeecccc
Confidence 456678887721 1 11222333345555678888888874 55899999999999999999999
Q ss_pred cccceeeecCCCceEEEEEeeCcee---------EeeccccCC
Q 012294 322 CFSDVTVSDNLSAIYKVGINSGEVS---------YMDLRKLGD 355 (466)
Q Consensus 322 ~~~~~~v~~~~~~i~~v~~~~g~l~---------~~dlr~~~~ 355 (466)
.++|++|.-.... -||++...| |-|||++-.
T Consensus 219 siSDfDv~GNlLi---tCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 219 SISDFDVQGNLLI---TCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred ceeeeeccCCeEE---Eeecccccccccccchhhhhhhhhhhc
Confidence 9999887765555 788877652 458888875
No 233
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.04 E-value=1.2e+02 Score=29.88 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=63.5
Q ss_pred eeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC-----
Q 012294 281 SSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD----- 355 (466)
Q Consensus 281 ~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~----- 355 (466)
-.+|.||.+.|.-|. +.|++||.+++++.|+..=+.|.+-.=+....+..+|.+-=++|--|..|-++++.
T Consensus 53 ~~~g~i~esTG~yg~----S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 53 YLDGHILESTGLYGF----SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred eeCCEEEEecccccc----ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence 378899999986663 37999999999999988644345556678889999999999999988888888774
Q ss_pred --CCCeEEeccCCc
Q 012294 356 --SSEWICLGDGRK 367 (466)
Q Consensus 356 --~~~W~~~~~~~~ 367 (466)
.+-|=-.+++..
T Consensus 129 y~GeGWgLt~d~~~ 142 (262)
T COG3823 129 YEGEGWGLTSDDKN 142 (262)
T ss_pred cCCcceeeecCCcc
Confidence 455655554333
No 234
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.03 E-value=2.8e+02 Score=27.45 Aligned_cols=82 Identities=11% Similarity=0.125 Sum_probs=52.0
Q ss_pred ccCCcEEEEecccCCCceeccceeeeeCC--CCceeecCCC-CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCC
Q 012294 178 ALSPGVAAAGATDFSGLQVLDLENGYVKE--TLNWENVTRS-SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLK 253 (466)
Q Consensus 178 ~l~~~lYaiGG~~~~g~~~l~svE~ydp~--t~~W~~va~M-r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~ 253 (466)
.+++.||.--| .-| .+.+-.+|.. ...|+.--+. +....+++.+++.+|+ -.. ..-.-.||+.|+.
T Consensus 53 ~~~g~i~esTG--~yg---~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~-----egvaf~~d~~t~~ 122 (262)
T COG3823 53 YLDGHILESTG--LYG---FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK-----EGVAFKYDADTLE 122 (262)
T ss_pred eeCCEEEEecc--ccc---cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec-----cceeEEEChHHhh
Confidence 37777777666 333 3445666666 4456543232 5555559999999999 665 3445789999954
Q ss_pred ccccccccccccCCceeecC
Q 012294 254 PVNEIGQNEIYGTDIESAIP 273 (466)
Q Consensus 254 ~~~~~~~~~~~~~~~w~~~~ 273 (466)
++++-+ |.|.+|....
T Consensus 123 ---~lg~~~-y~GeGWgLt~ 138 (262)
T COG3823 123 ---ELGRFS-YEGEGWGLTS 138 (262)
T ss_pred ---hhcccc-cCCcceeeec
Confidence 334322 5788998755
No 235
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=48.11 E-value=59 Score=34.54 Aligned_cols=68 Identities=19% Similarity=0.401 Sum_probs=53.7
Q ss_pred eeeEEe-eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEE--eeCceeEeeccc
Q 012294 276 KLRWVS-SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI--NSGEVSYMDLRK 352 (466)
Q Consensus 276 k~~~~~-~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~--~~g~l~~~dlr~ 352 (466)
-++|++ ..|.|..+|+ .+.|-.||..|++-+=+.. |.|.+-.|....+|+. +|. ++-.+-+.|-|.
T Consensus 136 ~V~wHPtA~NVLlsag~-------Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~---l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 136 LVQWHPTAPNVLLSAGS-------DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL---LCTTCKDKKVRVIDPRR 204 (472)
T ss_pred EEeecccchhhHhhccC-------CceEEEEeccCCceeeecC-CCCeEEEEEeccCCce---eeeecccceeEEEcCCC
Confidence 346775 6778887776 5589999999999777765 8888889999999988 444 777888888888
Q ss_pred cC
Q 012294 353 LG 354 (466)
Q Consensus 353 ~~ 354 (466)
-+
T Consensus 205 ~~ 206 (472)
T KOG0303|consen 205 GT 206 (472)
T ss_pred Cc
Confidence 54
No 236
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.87 E-value=3.2e+02 Score=27.88 Aligned_cols=212 Identities=15% Similarity=0.174 Sum_probs=130.0
Q ss_pred eeeeCCCC--ceeecCCCCCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecC--cce
Q 012294 201 NGYVKETL--NWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIP--ATK 276 (466)
Q Consensus 201 E~ydp~t~--~W~~va~Mr~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~--~~k 276 (466)
-+-||.+. .|..+-.-|.-.. ..+.++.|-+|+++|. +...+-.| |. .-|.... ..|
T Consensus 36 ~avd~~sG~~~We~ilg~RiE~s-a~vvgdfVV~GCy~g~-----lYfl~~~t-------Gs------~~w~f~~~~~vk 96 (354)
T KOG4649|consen 36 IAVDPQSGNLIWEAILGVRIECS-AIVVGDFVVLGCYSGG-----LYFLCVKT-------GS------QIWNFVILETVK 96 (354)
T ss_pred EEecCCCCcEEeehhhCceeeee-eEEECCEEEEEEccCc-----EEEEEecc-------hh------heeeeeehhhhc
Confidence 34466654 6876644466666 3568888766988653 34556666 43 3366554 233
Q ss_pred ee--EEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 277 LR--WVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 277 ~~--~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
.+ .-...++|| +|.||+ +....||++..+||...=++.-|+.-.+++-.++|| +....|.|-.. ....
T Consensus 97 ~~a~~d~~~glIy-cgshd~------~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly-~a~t~G~vlav--t~~~ 166 (354)
T KOG4649|consen 97 VRAQCDFDGGLIY-CGSHDG------NFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLY-AAITAGAVLAV--TKNP 166 (354)
T ss_pred cceEEcCCCceEE-EecCCC------cEEEecccccceEEecccCCceeccceecCCCceEE-EEeccceEEEE--ccCC
Confidence 32 223555555 577766 456789999999999877788888888888888888 55666765333 2222
Q ss_pred C--CCCeEEeccCCcccccccc--ccceeEEEEECCEEEEEeCCeEEEeEeeeecCCCCCCCCC-cccceeeccccCccc
Q 012294 355 D--SSEWICLGDGRKMVNGKRK--EGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGP-LEERVFRKNLMGRVT 429 (466)
Q Consensus 355 ~--~~~W~~~~~~~~~m~~~~~--~~~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~ 429 (466)
. +.-|.--.. ++.-. +| -+.+.-+.+.+|||-+...-.=.|| ++ .. +|. ..+..+
T Consensus 167 ~~~~~~w~~~~~--~PiF~-splcv~~sv~i~~VdG~l~~f~~sG~qvw-r~----~t---~GpIf~~Pc~--------- 226 (354)
T KOG4649|consen 167 YSSTEFWAATRF--GPIFA-SPLCVGSSVIITTVDGVLTSFDESGRQVW-RP----AT---KGPIFMEPCE--------- 226 (354)
T ss_pred CCcceehhhhcC--Ccccc-CceeccceEEEEEeccEEEEEcCCCcEEE-ee----cC---CCceeccccc---------
Confidence 1 222321111 11111 12 1367778889999999987777888 65 11 121 122221
Q ss_pred cCCCCceEEEeeecceeEEEeeccceEEEeccCC
Q 012294 430 DMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSSS 463 (466)
Q Consensus 430 ~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~~ 463 (466)
.+-.=.+|.++-+--|.+-..+.+-=+|++-.
T Consensus 227 --s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~ 258 (354)
T KOG4649|consen 227 --SRPSCQQISLENENCFCAPLPIAGHLLWATQS 258 (354)
T ss_pred --CCCcceEEEEecCCeEEEeccccceEEEEecC
Confidence 11222678888888888888888888888643
No 237
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=46.89 E-value=11 Score=31.91 Aligned_cols=46 Identities=7% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCeEEEEeHHHhhccCCCCccccccCC----C----ce-eEcCCchhHHHHhcccccC
Q 012294 30 GGQIFQTTKQTLALAGPKSLLSKLADS----T----HR-FIDRDPELFSILLSLLRTG 78 (466)
Q Consensus 30 GG~~F~t~~~tL~~~~p~s~f~~mf~~----~----~~-fiDRDp~~F~~IL~ylrtG 78 (466)
.|+.|.+.+..... +..++.|+.+ + ++ +-+.++.+++.|+.|+..-
T Consensus 10 Dg~~f~v~~~~a~~---S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 10 DGEVFEVEREVARQ---SKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred CCCEEEecHHHHHH---HHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 48999999998875 3477887764 1 35 5569999999999999753
No 238
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=46.55 E-value=3.4e+02 Score=27.74 Aligned_cols=140 Identities=16% Similarity=0.119 Sum_probs=88.6
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceee-EEeeCCeEEEEeecCCCCcccceEEEEeCC-------CCee
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLR-WVSSYNLLLASGSHSDISKVTGNIKFWDIR-------SGNV 312 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~-~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr-------t~~~ 312 (466)
.+++--||.+| |+|. -.|..-.+-|.. .-..++++.++. |-..++.+.|-+||.| ++++
T Consensus 73 D~t~kLWDv~t-------Gk~l----a~~k~~~~Vk~~~F~~~gn~~l~~t--D~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 73 DQTAKLWDVET-------GKQL----ATWKTNSPVKRVDFSFGGNLILAST--DKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred cceeEEEEcCC-------CcEE----EEeecCCeeEEEeeccCCcEEEEEe--hhhcCcceEEEEEEccCChhhhcccCc
Confidence 68899999999 7777 567665555443 334455555544 3445678899999999 4444
Q ss_pred eeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCC-------CCCeEEeccCCccccccccccceeEEEEEC
Q 012294 313 AWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD-------SSEWICLGDGRKMVNGKRKEGFGCKIECHA 385 (466)
Q Consensus 313 vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~-------~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~ 385 (466)
+-...-|.++...+.-++.+..|. .|-.+|.|---|+|+... ++ --+.+ |.- .+...+-.-++.+
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii-~Ghe~G~is~~da~~g~~~v~s~~~h~--~~Ind----~q~-s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETII-AGHEDGSISIYDARTGKELVDSDEEHS--SKIND----LQF-SRDRTYFITGSKD 211 (327)
T ss_pred eEEecCCccceeeeeecccCCEEE-EecCCCcEEEEEcccCceeeechhhhc--ccccc----ccc-cCCcceEEecccC
Confidence 444433455555566667777766 677999999999998431 00 02222 332 2322666667777
Q ss_pred CEEEEEeCCeEEEeEe
Q 012294 386 NQVFCGKGGEIELWSE 401 (466)
Q Consensus 386 ~~lf~~~~~~~~v~~~ 401 (466)
.+-+...-.++||---
T Consensus 212 ttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKT 227 (327)
T ss_pred ccceeeeccceeeEEE
Confidence 7777776667776543
No 239
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=46.54 E-value=50 Score=34.41 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=43.7
Q ss_pred cceEEEEeCCCCeeeeEEcCCcccccceeeecC-CCceEEEEEeeCceeEeeccccCC
Q 012294 299 TGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDN-LSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 299 ~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~-~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
.++|++||+.|++.+=+++.+.+..-++.+..+ ....--.|+-+|++-.-|+|+...
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE 106 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh
Confidence 458999999999999999988555555555542 333333899999999999999874
No 240
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.27 E-value=28 Score=41.05 Aligned_cols=88 Identities=26% Similarity=0.364 Sum_probs=58.5
Q ss_pred CCccccccccccccCCceeecCcceeeEEeeCCe---EEEEeecCCCCcccceEEEEeCCC---C---eeeeEEcCCccc
Q 012294 252 LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNL---LLASGSHSDISKVTGNIKFWDIRS---G---NVAWEVKDEVDC 322 (466)
Q Consensus 252 ~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~---Lyv~Gg~~g~~~~~~sVe~yDprt---~---~~vW~~~~~~d~ 322 (466)
++++.++....-|- +|.|...+.. |.|.|+- .|.|.+|||.. | .++=+...|.-.
T Consensus 55 lk~~~s~~s~~rF~----------kL~W~~~g~~~~GlIaGG~e------dG~I~ly~p~~~~~~~~~~~la~~~~h~G~ 118 (1049)
T KOG0307|consen 55 LKPVGSLQSSNRFN----------KLAWGSYGSHSHGLIAGGLE------DGNIVLYDPASIIANASEEVLATKSKHTGP 118 (1049)
T ss_pred ccccccccccccce----------eeeecccCCCccceeecccc------CCceEEecchhhccCcchHHHhhhcccCCc
Confidence 56777777666553 3445544443 4455553 55899999987 3 223334444223
Q ss_pred ccceeeecCCCceEEEEEeeCceeEeeccccCC
Q 012294 323 FSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 323 ~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
+..+.+.+...-+-+-|+.+|++++=||.+.+.
T Consensus 119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t 151 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPET 151 (1049)
T ss_pred eeeeeccccCCceeeccCCCCcEEEeccCCcCC
Confidence 345788888887778899999999999999884
No 241
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=46.06 E-value=3.5e+02 Score=27.73 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=37.4
Q ss_pred eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCc
Q 012294 282 SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSA 334 (466)
Q Consensus 282 ~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~ 334 (466)
.++-.+.++++|+ ++++||..+++.--.+.+|..-...++++.+++.
T Consensus 73 ~dg~~alS~swD~------~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~q 119 (315)
T KOG0279|consen 73 SDGNFALSASWDG------TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQ 119 (315)
T ss_pred cCCceEEeccccc------eEEEEEecCCcEEEEEEecCCceEEEEecCCCce
Confidence 4555556666544 7999999999888899999666688889999888
No 242
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.89 E-value=66 Score=36.71 Aligned_cols=95 Identities=18% Similarity=0.359 Sum_probs=70.8
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee-eEEcCC
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA-WEVKDE 319 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v-W~~~~~ 319 (466)
.++|--|+|.+...+....|.. | .+.++..+.++.-|++|- +.+-|++|+.-..+|| |.-.
T Consensus 389 DKTVRLWh~~~~~CL~~F~Hnd-f---------VTcVaFnPvDDryFiSGS------LD~KvRiWsI~d~~Vv~W~Dl-- 450 (712)
T KOG0283|consen 389 DKTVRLWHPGRKECLKVFSHND-F---------VTCVAFNPVDDRYFISGS------LDGKVRLWSISDKKVVDWNDL-- 450 (712)
T ss_pred cccEEeecCCCcceeeEEecCC-e---------eEEEEecccCCCcEeecc------cccceEEeecCcCeeEeehhh--
Confidence 4678888888755555555522 1 355678889999999998 4557999999988877 6544
Q ss_pred cccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
.|-+..++..++|.. ..||.++|...|-+-+-+.
T Consensus 451 ~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 451 RDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred hhhheeEEeccCCce-EEEEEeccEEEEEEccCCe
Confidence 567788899999776 4588899998887766554
No 243
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.48 E-value=20 Score=35.95 Aligned_cols=93 Identities=18% Similarity=0.150 Sum_probs=55.4
Q ss_pred CCeeEEEecCC-CCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 241 SNSIMVYDINS-LKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 241 l~sVE~YDp~t-~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
.+.|-+||... -+|+.++.- .+ .|.-|+.+.+..--|.++.. |..+++.||+..+.-.-+..++
T Consensus 212 d~~vr~wDir~~r~pl~eL~g------h~---~AVRkvk~Sph~~~lLaSas------YDmT~riw~~~~~ds~~e~~~~ 276 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTPLFELNG------HG---LAVRKVKFSPHHASLLASAS------YDMTVRIWDPERQDSAIETVDH 276 (311)
T ss_pred CceEEEEehhhccccceeecC------Cc---eEEEEEecCcchhhHhhhcc------ccceEEecccccchhhhhhhhc
Confidence 57899999998 556666632 22 23456667776667777776 4558999999966544444444
Q ss_pred cc-cccceeeecCCCceEEEEEeeCceeEe
Q 012294 320 VD-CFSDVTVSDNLSAIYKVGINSGEVSYM 348 (466)
Q Consensus 320 ~d-~~~~~~v~~~~~~i~~v~~~~g~l~~~ 348 (466)
.. =..+++.+.-....-+=|+.++.||+=
T Consensus 277 HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw 306 (311)
T KOG0277|consen 277 HTEFVCGLDWSLFDPGQVASTGWDELLYVW 306 (311)
T ss_pred cceEEeccccccccCceeeecccccceeee
Confidence 11 113333333333333456677777653
No 244
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=45.35 E-value=3.6e+02 Score=28.58 Aligned_cols=140 Identities=16% Similarity=0.298 Sum_probs=83.6
Q ss_pred cCCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccc
Q 012294 179 LSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEI 258 (466)
Q Consensus 179 l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~ 258 (466)
|.+.||+--= ..+..|.+.|- |. +-.....|....++.-|.-+. +......|..||..+++++..|
T Consensus 104 Lee~IyIydI---~~MklLhTI~t-------~~---~n~~gl~AlS~n~~n~ylAyp-~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 104 LEESIYIYDI---KDMKLLHTIET-------TP---PNPKGLCALSPNNANCYLAYP-GSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred EcccEEEEec---ccceeehhhhc-------cC---CCccceEeeccCCCCceEEec-CCCCCceEEEEEcccceeeeEE
Confidence 7778887532 34445555542 21 111223334444443343222 3334789999999999999988
Q ss_pred cccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC--cccccceeeecCCCceE
Q 012294 259 GQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE--VDCFSDVTVSDNLSAIY 336 (466)
Q Consensus 259 ~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~--~d~~~~~~v~~~~~~i~ 336 (466)
..-+ ..++++. ...+|.|.|.+...|+ -|++|+..+++.+.|++-- -..+..++.+++...|
T Consensus 170 ~aH~-------~~lAala---fs~~G~llATASeKGT-----VIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L- 233 (391)
T KOG2110|consen 170 NAHK-------GPLAALA---FSPDGTLLATASEKGT-----VIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL- 233 (391)
T ss_pred EecC-------CceeEEE---ECCCCCEEEEeccCce-----EEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE-
Confidence 8633 1112221 1368999999987665 3999999999999999755 2234556667776651
Q ss_pred EEEEeeCceeEe
Q 012294 337 KVGINSGEVSYM 348 (466)
Q Consensus 337 ~v~~~~g~l~~~ 348 (466)
.+-+..+++-+.
T Consensus 234 ~~sS~TeTVHiF 245 (391)
T KOG2110|consen 234 AASSNTETVHIF 245 (391)
T ss_pred EEecCCCeEEEE
Confidence 122356664333
No 245
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=44.65 E-value=1.1e+02 Score=32.54 Aligned_cols=62 Identities=13% Similarity=0.286 Sum_probs=38.3
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
.|.|-.||..|-..+-++.|+.. .| .+.| ..+|-+++.+- -...|++||||++++|+|-..|
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~----i~------S~sf-n~dGs~l~Ttc------kDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDM----VY------SMSF-NRDGSLLCTTC------KDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred CceEEEEeccCCceeeecCCCCe----EE------EEEe-ccCCceeeeec------ccceeEEEcCCCCcEeeecccc
Confidence 57899999999444444444220 01 1112 13444444443 2337999999999999999777
No 246
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.37 E-value=3e+02 Score=27.74 Aligned_cols=102 Identities=18% Similarity=0.282 Sum_probs=57.3
Q ss_pred eEEEEeecCCCCcccceEEEEeCCCCeeeeEEc----CCcccccceeeecCC-C--ceEEEEEeeCceeEeeccccCCCC
Q 012294 285 LLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK----DEVDCFSDVTVSDNL-S--AIYKVGINSGEVSYMDLRKLGDSS 357 (466)
Q Consensus 285 ~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~----~~~d~~~~~~v~~~~-~--~i~~v~~~~g~l~~~dlr~~~~~~ 357 (466)
+=+|+|| ..+.|.+|+..+++ |... +|.|=.-|++-++.. . .--+=|+++|.+.+---+ .| .+
T Consensus 176 krlvSgG------cDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e-~e 245 (299)
T KOG1332|consen 176 KRLVSGG------CDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EE-YE 245 (299)
T ss_pred ceeeccC------CccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec-Cc-cC
Confidence 3467887 34579999999998 8763 345555566666633 2 222356799998776555 34 57
Q ss_pred CeEEeccCCcccccccccc-ceeEEEEECCEEEEEeCC-eEEEeEee
Q 012294 358 EWICLGDGRKMVNGKRKEG-FGCKIECHANQVFCGKGG-EIELWSEI 402 (466)
Q Consensus 358 ~W~~~~~~~~~m~~~~~~~-~~~~~~~~~~~lf~~~~~-~~~v~~~~ 402 (466)
+|..-- +.. .+.- ....-...++-|=++-|+ .|.+|-+-
T Consensus 246 ~wk~tl-----l~~-f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 246 PWKKTL-----LEE-FPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccc-----ccc-CCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 775211 221 2221 223333444555555333 46677653
No 247
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.04 E-value=44 Score=36.95 Aligned_cols=121 Identities=16% Similarity=0.237 Sum_probs=71.9
Q ss_pred EEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEe-eCCeEEEEeecCCCCcccc
Q 012294 223 IGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVS-SYNLLLASGSHSDISKVTG 300 (466)
Q Consensus 223 va~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~-~~~~Lyv~Gg~~g~~~~~~ 300 (466)
++.+.+.-|+ +++ ..+..|||-.-++.+.|--- + ...+.+.+.+++ ++..|..+|- ...+
T Consensus 790 igfL~~lr~i~ScD------~giHlWDPFigr~Laq~~da-----p--k~~a~~~ikcl~nv~~~iliAgc-----saeS 851 (1034)
T KOG4190|consen 790 IGFLADLRSIASCD------GGIHLWDPFIGRLLAQMEDA-----P--KEGAGGNIKCLENVDRHILIAGC-----SAES 851 (1034)
T ss_pred eeeeeccceeeecc------CcceeecccccchhHhhhcC-----c--ccCCCceeEecccCcchheeeec-----cchh
Confidence 5555555555 444 45678999885555544320 1 112234445554 3555555553 1356
Q ss_pred eEEEEeCCCCeeeeEEc-----CC-cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEec
Q 012294 301 NIKFWDIRSGNVAWEVK-----DE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLG 363 (466)
Q Consensus 301 sVe~yDprt~~~vW~~~-----~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~ 363 (466)
+|.++|.|+..-+=||+ .| ... --++|.+.|+.+ .++--+|++...|-|.-..-|.|-++.
T Consensus 852 TVKl~DaRsce~~~E~kVcna~~Pna~~-R~iaVa~~GN~l-Aa~LSnGci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 852 TVKLFDARSCEWTCELKVCNAPGPNALT-RAIAVADKGNKL-AAALSNGCIAILDARNGKVINSWRPME 918 (1034)
T ss_pred hheeeecccccceeeEEeccCCCCchhe-eEEEeccCcchh-hHHhcCCcEEEEecCCCceeccCCccc
Confidence 89999999998332332 12 111 235688888873 255589999999999855467776654
No 248
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=43.78 E-value=1.1e+02 Score=35.02 Aligned_cols=92 Identities=22% Similarity=0.292 Sum_probs=64.8
Q ss_pred ceEEEEeCCCCeeeeEEcCCccc-ccceeeecCCCceEEEEE-eeCceeEeeccccCCCCCeEEeccCCcccccccccc-
Q 012294 300 GNIKFWDIRSGNVAWEVKDEVDC-FSDVTVSDNLSAIYKVGI-NSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG- 376 (466)
Q Consensus 300 ~sVe~yDprt~~~vW~~~~~~d~-~~~~~v~~~~~~i~~v~~-~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~- 376 (466)
..|+.||..+++.+..+++..|- =.-+-|.-|-+.||.+++ -+-+|.+.|.-+.|. ++- |.+ ..+-
T Consensus 618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc------vA~----m~G-HsE~V 686 (1080)
T KOG1408|consen 618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC------VAQ----MTG-HSEAV 686 (1080)
T ss_pred cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh------hhh----hcC-cchhe
Confidence 36999999999999999877221 134567778899999999 556899999999664 554 554 1221
Q ss_pred ceeEEEEECCEEE-EEeCCeEEEeEee
Q 012294 377 FGCKIECHANQVF-CGKGGEIELWSEI 402 (466)
Q Consensus 377 ~~~~~~~~~~~lf-~~~~~~~~v~~~~ 402 (466)
.|.|..--+.+|. ++.++.|=||-=+
T Consensus 687 TG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeeeecccchhheeecCCceEEEEECc
Confidence 4555444445554 4577889999765
No 249
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.91 E-value=6.5e+02 Score=29.97 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=25.9
Q ss_pred eeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccc
Q 012294 277 LRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCF 323 (466)
Q Consensus 277 ~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~ 323 (466)
+-.++-.++|...|- ..+|++||-...+.|-++.--.|+|
T Consensus 256 vlfhp~q~lIlSnsE-------DksirVwDm~kRt~v~tfrrendRF 295 (1202)
T KOG0292|consen 256 VLFHPHQDLILSNSE-------DKSIRVWDMTKRTSVQTFRRENDRF 295 (1202)
T ss_pred EEecCccceeEecCC-------CccEEEEecccccceeeeeccCCeE
Confidence 345566677766554 5589999988877776654333343
No 250
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=42.81 E-value=64 Score=33.53 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=52.4
Q ss_pred CCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294 283 YNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 283 ~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
.+-+.|+|| ++|-|+..|+.++++.-...+|++.+-++-.-++..-|-.-|+++..|-+-+.++
T Consensus 104 ~~p~la~~G------~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 104 GNPFLAAGG------YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCeeEEeec------ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 456677887 5779999999999999999999988888888888877666666888876666666
No 251
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.10 E-value=1.8e+02 Score=33.49 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=81.7
Q ss_pred ecccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCCCCcee---EEEEE--CCeEEE-EecCCCcCCCeeEEEec
Q 012294 176 LLALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRSSSTVQ---AIGSS--DKHLFV-SFESGRRNSNSIMVYDI 249 (466)
Q Consensus 176 l~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~Mr~~~~---Ava~l--~~~IYa-Gg~~g~~~l~sVE~YDp 249 (466)
+....+.|.+-|+ .|| ++.+||...+.= ...-|++.- =|... .+..|+ +.++| .+..||.
T Consensus 141 fh~tep~iliSGS--QDg-----~vK~~DlR~~~S--~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG-----~lqlWDl 206 (839)
T KOG0269|consen 141 FHSTEPNILISGS--QDG-----TVKCWDLRSKKS--KSTFRSNSESIRDVKFSPGYGNKFASIHDSG-----YLQLWDL 206 (839)
T ss_pred eccCCccEEEecC--CCc-----eEEEEeeecccc--cccccccchhhhceeeccCCCceEEEecCCc-----eEEEeec
Confidence 3445677888888 666 577888776641 111111111 02222 356777 66644 4688998
Q ss_pred CCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee-eEEcCCcccccceee
Q 012294 250 NSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA-WEVKDEVDCFSDVTV 328 (466)
Q Consensus 250 ~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v-W~~~~~~d~~~~~~v 328 (466)
..+ ...+-+ -.....+...+.|++ ++-..|.||.|+ .|.+||--+++.- -.++.-.-+...+.-
T Consensus 207 Rqp--~r~~~k------~~AH~GpV~c~nwhP-nr~~lATGGRDK------~vkiWd~t~~~~~~~~tInTiapv~rVkW 271 (839)
T KOG0269|consen 207 RQP--DRCEKK------LTAHNGPVLCLNWHP-NREWLATGGRDK------MVKIWDMTDSRAKPKHTINTIAPVGRVKW 271 (839)
T ss_pred cCc--hhHHHH------hhcccCceEEEeecC-CCceeeecCCCc------cEEEEeccCCCccceeEEeecceeeeeee
Confidence 772 111111 011223455678999 777888888554 6888885543210 122211333355556
Q ss_pred ecCCCceEEEEE--eeCceeEeeccc
Q 012294 329 SDNLSAIYKVGI--NSGEVSYMDLRK 352 (466)
Q Consensus 329 ~~~~~~i~~v~~--~~g~l~~~dlr~ 352 (466)
.++.......|+ .+-.+.+=|+|+
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred ccCccchhhhhhccccceEEEEeecc
Confidence 666665555665 566678888875
No 252
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.02 E-value=4e+02 Score=28.79 Aligned_cols=175 Identities=15% Similarity=0.300 Sum_probs=97.2
Q ss_pred CeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee-eEEcCCc
Q 012294 242 NSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA-WEVKDEV 320 (466)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v-W~~~~~~ 320 (466)
..+-.||..|--.+..+++ . .........|.+ ++.=+|+|+.| ++|-.||..-+..- |+-..-
T Consensus 291 e~~~lwDv~tgd~~~~y~~------~--~~~S~~sc~W~p-Dg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr~- 354 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPS------G--LGFSVSSCAWCP-DGFRFVTGSPD------RTIIMWDLDGNILGNWEGVRD- 354 (519)
T ss_pred HheeeccCCcchhhhhccc------C--cCCCcceeEEcc-CCceeEecCCC------CcEEEecCCcchhhccccccc-
Confidence 3477899988333333332 1 122355677885 77779999855 47888887666311 665433
Q ss_pred ccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEE-CCEEEEE--eCCeEE
Q 012294 321 DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECH-ANQVFCG--KGGEIE 397 (466)
Q Consensus 321 d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~-~~~lf~~--~~~~~~ 397 (466)
.+..|+++..||-.++.|++. -.++..+.-.....+ -+++.++.|. +..- +|+++.+ ...++.
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d-~~i~l~~~e~~~dr~---lise~~~its----------~~iS~d~k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVD-KKIRLYNREARVDRG---LISEEQPITS----------FSISKDGKLALVNLQDQEIH 420 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecc-cceeeechhhhhhhc---cccccCceeE----------EEEcCCCcEEEEEcccCeeE
Confidence 367899999999999988853 232222221111000 1233232222 1111 2333333 567777
Q ss_pred EeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecc-eeEEEeeccceEEEeccC
Q 012294 398 LWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGN-KMFVTRKGQQTVEVWQSS 462 (466)
Q Consensus 398 v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~-r~f~~~~~~~~~~vw~~~ 462 (466)
+|.= .|+..=|.|+|+... .=.|.+-=+||| .+-++=+|-.-|-+|.-.
T Consensus 421 LWDl--------------~e~~lv~kY~Ghkq~--~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 421 LWDL--------------EENKLVRKYFGHKQG--HFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred Eeec--------------chhhHHHHhhccccc--ceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 7753 233334447777221 115777667777 555666777778899643
No 253
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=40.34 E-value=50 Score=28.40 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=53.7
Q ss_pred CCCCCeEEEEEC-CeEEEEeHHHhhccCCCCccccccCC---------Cc-eeEcCCchhHHHHhcccc-----cCc-cc
Q 012294 19 SIDSNIVTIDVG-GQIFQTTKQTLALAGPKSLLSKLADS---------TH-RFIDRDPELFSILLSLLR-----TGN-LP 81 (466)
Q Consensus 19 ~~~~~~V~LnVG-G~~F~t~~~tL~~~~p~s~f~~mf~~---------~~-~fiDRDp~~F~~IL~ylr-----tG~-l~ 81 (466)
.+..+-|+|--+ |+.|...|..-.- +.-+++|+++ ++ +|-|.+..+.+.+-.||- ++. ..
T Consensus 13 gp~~~yVkLvS~Ddhefiikre~Amt---SgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~e 89 (112)
T KOG3473|consen 13 GPDSMYVKLVSSDDHEFIIKREHAMT---SGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTE 89 (112)
T ss_pred CcchhheEeecCCCcEEEEeehhhhh---hhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeecccccc
Confidence 455678888766 6899999876543 2378888874 34 699999999998888873 343 33
Q ss_pred cCCCCcC---hHHHHHhhcccc
Q 012294 82 SKAKAFD---IEDLIEESKFYN 100 (466)
Q Consensus 82 ~~~~~~~---~~~Ll~EA~f~~ 100 (466)
+++-+++ ..+||-+|+|+.
T Consensus 90 iPeF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 90 IPEFDIPPEMALELLMAANYLE 111 (112)
T ss_pred CCCCCCCHHHHHHHHHHhhhhc
Confidence 3222222 357888888864
No 254
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=39.21 E-value=5.5e+02 Score=28.48 Aligned_cols=71 Identities=17% Similarity=0.299 Sum_probs=56.6
Q ss_pred eEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 278 RWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 278 ~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
...+....|.++.+. .+.|-+||...-++.-.|.+. ..+-+++.+++.+-.|++-.+++-.|+.-|.|+-.
T Consensus 171 ~ys~skr~lL~~asd------~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASD------KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred ecccccceeeEeecc------CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 344577888888884 458999999888877666543 44558889999999999999999999999999744
No 255
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=39.16 E-value=3.2e+02 Score=28.92 Aligned_cols=65 Identities=22% Similarity=0.393 Sum_probs=45.4
Q ss_pred eeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294 281 SSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 281 ~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
..++.|.|.|+ ..+-|.+|+..++..+|+.-.+.+-+-=+-=-+ -..|+..|..+|.|+|--+-+
T Consensus 115 shdgtlLATGd------msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 115 SHDGTLLATGD------MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred ccCceEEEecC------CCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCC
Confidence 37888899998 455799999999999999864431111111112 345677889999998887666
No 256
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=39.15 E-value=4.1e+02 Score=28.35 Aligned_cols=135 Identities=16% Similarity=0.392 Sum_probs=82.5
Q ss_pred ceEEEEeCCCCeeeeEEcCC-----cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccc
Q 012294 300 GNIKFWDIRSGNVAWEVKDE-----VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRK 374 (466)
Q Consensus 300 ~sVe~yDprt~~~vW~~~~~-----~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~ 374 (466)
.-|.+|-|.+++ |.+... .++.-|+.-++....+|.=|+.+|.+.+=|.|+.-. .+ .|.+|..
T Consensus 234 ~~I~lw~~~~g~--W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~-~~---------~~~~kAh 301 (440)
T KOG0302|consen 234 KGIHLWEPSTGS--WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK-KA---------AVSTKAH 301 (440)
T ss_pred cceEeeeeccCc--eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-cc---------eeEeecc
Confidence 369999999999 988533 445555566667888999999999999999999632 11 1222112
Q ss_pred ccceeEEEEECCE--EEEE--eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee--cceeEE
Q 012294 375 EGFGCKIECHANQ--VFCG--KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG--GNKMFV 448 (466)
Q Consensus 375 ~~~~~~~~~~~~~--lf~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g--g~r~f~ 448 (466)
. +.+-+...++. +.++ .+|.+.||.==-..... .+. .|.+ .++.|++|+.- -+-.|+
T Consensus 302 ~-sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~-----pVA--~fk~---------Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 302 N-SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ-----PVA--TFKY---------HKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred C-CceeeEEccCCcceeeecCCCceEEEEEhhhccCCC-----cce--eEEe---------ccCCeeEEEeccccCceEE
Confidence 2 44444444432 3444 56678888743111111 111 2444 67889999887 233444
Q ss_pred EeeccceEEEeccCC
Q 012294 449 TRKGQQTVEVWQSSS 463 (466)
Q Consensus 449 ~~~~~~~~~vw~~~~ 463 (466)
.-.+-+-|-+|+-+.
T Consensus 365 asg~D~QitiWDlsv 379 (440)
T KOG0302|consen 365 ASGEDNQITIWDLSV 379 (440)
T ss_pred eccCCCcEEEEEeec
Confidence 444445578887654
No 257
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=37.74 E-value=48 Score=33.98 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=48.8
Q ss_pred ceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 300 GNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 300 ~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
+++.+||.||.++.|...+. +...-+++..+....+.+-|+-+|-|-+=|+|+..
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk 248 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK 248 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC
Confidence 47999999999999998754 66778888999999999999999999999999976
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=37.04 E-value=82 Score=32.32 Aligned_cols=53 Identities=23% Similarity=0.414 Sum_probs=36.6
Q ss_pred ccceEEEEeCC-CCeeeeEEcCCcccccceeee-----c-CCCceEEEEEeeCceeEeeccccCC
Q 012294 298 VTGNIKFWDIR-SGNVAWEVKDEVDCFSDVTVS-----D-NLSAIYKVGINSGEVSYMDLRKLGD 355 (466)
Q Consensus 298 ~~~sVe~yDpr-t~~~vW~~~~~~d~~~~~~v~-----~-~~~~i~~v~~~~g~l~~~dlr~~~~ 355 (466)
..+.+.+||.| .++.+|+-+ ++-.++|. + ..-.|| .|++++++-+.|+|+++.
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~----kvH~~GV~SI~ss~~~~~~I~-TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNS----KVHTSGVVSIYSSPPKPTYIA-TGSYDECIRVLDTRNMGK 245 (339)
T ss_pred CCceEEEEEecCCcceeeecc----eeeecceEEEecCCCCCceEE-EeccccceeeeehhcccC
Confidence 35579999999 778667642 22333333 2 233444 899999999999999884
No 259
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=36.64 E-value=16 Score=28.01 Aligned_cols=49 Identities=8% Similarity=0.230 Sum_probs=36.4
Q ss_pred EEEEEC-CeEEEEeHHHhhccCCCCccccccCC----Cc-e-eEcCCchhHHHHhcccc
Q 012294 25 VTIDVG-GQIFQTTKQTLALAGPKSLLSKLADS----TH-R-FIDRDPELFSILLSLLR 76 (466)
Q Consensus 25 V~LnVG-G~~F~t~~~tL~~~~p~s~f~~mf~~----~~-~-fiDRDp~~F~~IL~ylr 76 (466)
|+|.=. |+.|.+.+..+.. +..+..|+.+ ++ + +-+.++.+++.|++|+.
T Consensus 3 v~L~SsDg~~f~V~~~~a~~---S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAKQ---SKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHTT---SHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHHH---hHHHHHHHhhhcccccccccCccCHHHHHHHHHHHH
Confidence 444443 8999999998876 4588888875 22 4 66899999999999975
No 260
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=36.30 E-value=3e+02 Score=24.14 Aligned_cols=93 Identities=22% Similarity=0.230 Sum_probs=49.4
Q ss_pred eEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCC
Q 012294 229 HLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR 308 (466)
Q Consensus 229 ~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr 308 (466)
.|.||.+ ...|-+|+-+. .+.||.... .++.+.- +.+--|+-|-. +++|-+||-.
T Consensus 17 eLlvGs~-----D~~IRvf~~~e--~~~Ei~e~~----------~v~~L~~--~~~~~F~Y~l~------NGTVGvY~~~ 71 (111)
T PF14783_consen 17 ELLVGSD-----DFEIRVFKGDE--IVAEITETD----------KVTSLCS--LGGGRFAYALA------NGTVGVYDRS 71 (111)
T ss_pred eEEEecC-----CcEEEEEeCCc--EEEEEeccc----------ceEEEEE--cCCCEEEEEec------CCEEEEEeCc
Confidence 4777655 45677887776 444554422 1223333 33333555553 4588888764
Q ss_pred CCeeeeEEcCCcccccceeeecC--CCceEEEEEeeCceeEeecc
Q 012294 309 SGNVAWEVKDEVDCFSDVTVSDN--LSAIYKVGINSGEVSYMDLR 351 (466)
Q Consensus 309 t~~~vW~~~~~~d~~~~~~v~~~--~~~i~~v~~~~g~l~~~dlr 351 (466)
..- |..+.+....+=+..+.+ |-.=..+|=.+|. +|+|
T Consensus 72 ~Rl--WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGk---ve~R 111 (111)
T PF14783_consen 72 QRL--WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGK---VEVR 111 (111)
T ss_pred cee--eeeccCCCeEEEEEEcCCCCCceEEEEEecCCe---EEeC
Confidence 444 888777433333333333 3333334447777 5655
No 261
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=35.13 E-value=4.8e+02 Score=30.53 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=49.0
Q ss_pred ceeeEEe----eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeec
Q 012294 275 TKLRWVS----SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDL 350 (466)
Q Consensus 275 ~k~~~~~----~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dl 350 (466)
..++|+. ...+|.|+-| .+++-+||..||+.+|.-.-......++.+++-.+.=|.|-+--|-|...++
T Consensus 113 qdl~W~~~rd~Srd~LlaIh~-------ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 113 QDLCWVPARDDSRDVLLAIHG-------SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred hheeeeeccCcchheeEEecC-------CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 4567775 3477888877 4589999999999999987664455667788855555555555666655544
Q ss_pred c
Q 012294 351 R 351 (466)
Q Consensus 351 r 351 (466)
-
T Consensus 186 l 186 (1062)
T KOG1912|consen 186 L 186 (1062)
T ss_pred c
Confidence 3
No 262
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=34.58 E-value=5.2e+02 Score=26.44 Aligned_cols=104 Identities=18% Similarity=0.322 Sum_probs=56.8
Q ss_pred CCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEE-CCeEEEEecCCCcCCCeeEEEecCCCCcc
Q 012294 180 SPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSS-DKHLFVSFESGRRNSNSIMVYDINSLKPV 255 (466)
Q Consensus 180 ~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l-~~~IYaGg~~g~~~l~sVE~YDp~t~~~~ 255 (466)
.+++.|.|. |+.. +-.|.....+|.-++.+ -.-+-.|+.. +|...|-+ ...+||-+|-...
T Consensus 72 ~g~~La~aS--FD~t-----~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATC----SRDKSVWiWe~de---- 136 (312)
T KOG0645|consen 72 HGRYLASAS--FDAT-----VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATC----SRDKSVWIWEIDE---- 136 (312)
T ss_pred CCcEEEEee--ccce-----EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEe----eCCCeEEEEEecC----
Confidence 567666666 7643 33455556677766665 1222223322 22233311 1256777776653
Q ss_pred ccccccccccCCceeecC--------cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCC-CCeeeeEEc
Q 012294 256 NEIGQNEIYGTDIESAIP--------ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIR-SGNVAWEVK 317 (466)
Q Consensus 256 ~~~~~~~~~~~~~w~~~~--------~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDpr-t~~~vW~~~ 317 (466)
++...-++ .-.+.|++..++|+.++ |.++|.+|+.. .+. |+..
T Consensus 137 ----------ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S-------YDnTIk~~~~~~ddd--W~c~ 188 (312)
T KOG0645|consen 137 ----------DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS-------YDNTIKVYRDEDDDD--WECV 188 (312)
T ss_pred ----------CCcEEEEeeeccccccccEEEEcCCcceeEEec-------cCCeEEEEeecCCCC--eeEE
Confidence 11111111 11356999888876554 57799999888 777 8773
No 263
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=34.21 E-value=2.9e+02 Score=31.88 Aligned_cols=94 Identities=11% Similarity=0.204 Sum_probs=56.4
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEe--eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcC
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVS--SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKD 318 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~--~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~ 318 (466)
+..|-.||..|-.. .+.++ .|...+ ....+. -+..+.|+|-.|| +|..||-.++...=++++
T Consensus 42 ~E~vn~WdlRtge~-----~~~l~---~~~~k~--evt~l~~~~d~l~lAVGYaDG------sVqif~~~s~~~~~tfng 105 (888)
T KOG0306|consen 42 LEQVNIWDLRTGEI-----EKKLI---LLKKKA--EVTCLRSSDDILLLAVGYADG------SVQIFSLESEEILITFNG 105 (888)
T ss_pred cccEeEEeeecchh-----hhhhh---hhcccc--eEEEeeccCCcceEEEEecCc------eEEeeccCCCceeeeecc
Confidence 56788999999211 11111 122221 122222 3556678887555 799999999988899988
Q ss_pred CcccccceeeecCCCceEEEEEeeCceeEeecc
Q 012294 319 EVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLR 351 (466)
Q Consensus 319 ~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr 351 (466)
|.....-+-++-.|.. +.=|++++++-+-||=
T Consensus 106 HK~AVt~l~fd~~G~r-laSGskDt~IIvwDlV 137 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTR-LASGSKDTDIIVWDLV 137 (888)
T ss_pred cccceEEEEEcccCce-EeecCCCccEEEEEec
Confidence 8633343345555544 3456677777776653
No 264
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=34.10 E-value=1.8e+02 Score=30.39 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=56.1
Q ss_pred cceEEEEeCCCCeeeeEEcCCcc--cccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccc-ccccc
Q 012294 299 TGNIKFWDIRSGNVAWEVKDEVD--CFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVN-GKRKE 375 (466)
Q Consensus 299 ~~sVe~yDprt~~~vW~~~~~~d--~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~-~~~~~ 375 (466)
.++|.+|+-.|.+|+=+++.++. +.-.+-.-+.+--=|.||-.+.++|++.|.-- + +.+ +. +|+.+
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ------v-Vrs----fsSGkREg 437 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ------V-VRS----FSSGKREG 437 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce------E-Eee----eccCCccC
Confidence 56899999999999988887751 11222233466667889999999999866431 1 222 33 31222
Q ss_pred c--ceeEEEEECCEEEEEeCCeE
Q 012294 376 G--FGCKIECHANQVFCGKGGEI 396 (466)
Q Consensus 376 ~--~~~~~~~~~~~lf~~~~~~~ 396 (466)
| -.+.|.--|.++||..+|.+
T Consensus 438 GdFi~~~lSpkGewiYcigED~v 460 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGV 460 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcE
Confidence 2 34445556789999977665
No 265
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=33.99 E-value=43 Score=28.65 Aligned_cols=51 Identities=29% Similarity=0.326 Sum_probs=41.5
Q ss_pred CCCeEEEEECC--eEEEEeHHHhhccCCCCccccccCC---------Cc-eeEcCCchhHHHHhccc
Q 012294 21 DSNIVTIDVGG--QIFQTTKQTLALAGPKSLLSKLADS---------TH-RFIDRDPELFSILLSLL 75 (466)
Q Consensus 21 ~~~~V~LnVGG--~~F~t~~~tL~~~~p~s~f~~mf~~---------~~-~fiDRDp~~F~~IL~yl 75 (466)
+..-+.+.||. ++|.+....|.. | +|..|+.. ++ +.|-.|...|++||.+|
T Consensus 37 p~G~~~VyVG~~~~Rfvvp~~~L~h--p--~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~l 99 (100)
T PF02519_consen 37 PKGHFAVYVGEERRRFVVPVSYLNH--P--LFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLL 99 (100)
T ss_pred CCCeEEEEeCccceEEEechHHcCc--h--hHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHh
Confidence 35678999996 799999999975 5 89988763 23 88899999999999875
No 266
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=33.94 E-value=4e+02 Score=24.93 Aligned_cols=72 Identities=14% Similarity=0.302 Sum_probs=49.8
Q ss_pred ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEE--eeCceeEeeccc
Q 012294 275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI--NSGEVSYMDLRK 352 (466)
Q Consensus 275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~--~~g~l~~~dlr~ 352 (466)
..+.|-+-++.+.++-|. ....|.+||.+ .+.+.+.. ...+-.+.-+++|..|...|- .+|+|.+-|.++
T Consensus 63 ~~~~WsP~g~~favi~g~-----~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 63 HDVAWSPNGNEFAVIYGS-----MPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred EEEEECcCCCEEEEEEcc-----CCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 456788888888887662 22379999997 55566664 233445778889887664442 458899999987
Q ss_pred cC
Q 012294 353 LG 354 (466)
Q Consensus 353 ~~ 354 (466)
.+
T Consensus 135 ~~ 136 (194)
T PF08662_consen 135 KK 136 (194)
T ss_pred CE
Confidence 65
No 267
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=33.05 E-value=9.9 Score=43.68 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=41.4
Q ss_pred CCeEEEEECCeEEEEeHHHhhccCCCCccccccCC-----CceeEc---CCchhHHHHhcccc-cCcc
Q 012294 22 SNIVTIDVGGQIFQTTKQTLALAGPKSLLSKLADS-----THRFID---RDPELFSILLSLLR-TGNL 80 (466)
Q Consensus 22 ~~~V~LnVGG~~F~t~~~tL~~~~p~s~f~~mf~~-----~~~fiD---RDp~~F~~IL~ylr-tG~l 80 (466)
+-+|++. .|+.|.+|+-.|.++ ..||..||.. +.+=.. ...++++.||+||| +-+.
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aR--lEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~ 776 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSAR--LEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKV 776 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeH--HHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchH
Confidence 4567777 999999999999984 4599999974 222222 23589999999999 4433
No 268
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=32.86 E-value=6.3e+02 Score=29.85 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=54.4
Q ss_pred cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC--cccccceeeecCCCceEEEEEeeCceeEeecc
Q 012294 274 ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE--VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLR 351 (466)
Q Consensus 274 ~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~--~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr 351 (466)
..++.|++=+|.|.+.+. .++|-+|++.+-+.....++. ...|.++..++.|-.| +.+..+|.|-+=|--
T Consensus 191 ~~~~aW~Pk~g~la~~~~-------d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi-AAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPV-------DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI-AASTLDGQILVWNVD 262 (933)
T ss_pred eeeeeecCCCCeEEeecc-------CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE-eeeccCCcEEEEecc
Confidence 346779988888888886 568999998887766666554 4448888999986553 345588888888877
Q ss_pred ccCC
Q 012294 352 KLGD 355 (466)
Q Consensus 352 ~~~~ 355 (466)
+.++
T Consensus 263 t~~~ 266 (933)
T KOG1274|consen 263 THER 266 (933)
T ss_pred cchh
Confidence 6554
No 269
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=32.74 E-value=5.2e+02 Score=25.86 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=79.3
Q ss_pred eEEEEeCCCCeeee--EEc--CCcccccceeeecC---CCceEEEEEe---------e-CceeEeeccccCC-CCCeEEe
Q 012294 301 NIKFWDIRSGNVAW--EVK--DEVDCFSDVTVSDN---LSAIYKVGIN---------S-GEVSYMDLRKLGD-SSEWICL 362 (466)
Q Consensus 301 sVe~yDprt~~~vW--~~~--~~~d~~~~~~v~~~---~~~i~~v~~~---------~-g~l~~~dlr~~~~-~~~W~~~ 362 (466)
.|+++||.+.+++= ++. |...+.+.+.+..+ ....++||.. + |.|++.++.+.+. ......+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57777777766551 111 11333344444443 3677778773 2 8888888887521 1223333
Q ss_pred ccCCccccccccccceeEEEEECCEEEEEeCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeee
Q 012294 363 GDGRKMVNGKRKEGFGCKIECHANQVFCGKGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFG 442 (466)
Q Consensus 363 ~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~g 442 (466)
.+ .. -.+.=..|+.++|.|.++-|..|.||.=- . ++++.++++.+. .-.|+++..=
T Consensus 83 ~~----~~---~~g~V~ai~~~~~~lv~~~g~~l~v~~l~----~--------~~~l~~~~~~~~-----~~~i~sl~~~ 138 (321)
T PF03178_consen 83 HS----TE---VKGPVTAICSFNGRLVVAVGNKLYVYDLD----N--------SKTLLKKAFYDS-----PFYITSLSVF 138 (321)
T ss_dssp EE----EE---ESS-EEEEEEETTEEEEEETTEEEEEEEE----T--------TSSEEEEEEE-B-----SSSEEEEEEE
T ss_pred EE----Ee---ecCcceEhhhhCCEEEEeecCEEEEEEcc----C--------cccchhhheecc-----eEEEEEEecc
Confidence 33 22 12356678888999999999999998653 1 224556655554 3379999998
Q ss_pred cceeEEEeeccceEEEe
Q 012294 443 GNKMFVTRKGQQTVEVW 459 (466)
Q Consensus 443 g~r~f~~~~~~~~~~vw 459 (466)
||++.|. .-.++|-+.
T Consensus 139 ~~~I~vg-D~~~sv~~~ 154 (321)
T PF03178_consen 139 KNYILVG-DAMKSVSLL 154 (321)
T ss_dssp TTEEEEE-ESSSSEEEE
T ss_pred ccEEEEE-EcccCEEEE
Confidence 9988877 334555443
No 270
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=32.73 E-value=1.1e+02 Score=20.08 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=26.9
Q ss_pred eeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEe
Q 012294 311 NVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYM 348 (466)
Q Consensus 311 ~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~ 348 (466)
+++-++.+|...+-++...+++.. +..|+.|+.|.+-
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~-~~s~~~D~~i~vw 38 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNF-LASGSSDGTIRVW 38 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSE-EEEEETTSEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccccc-ceeeCCCCEEEEE
Confidence 456777778778888888888555 4477788887653
No 271
>PRK04922 tolB translocation protein TolB; Provisional
Probab=32.38 E-value=4e+02 Score=28.06 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=44.5
Q ss_pred ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeC--ceeEeeccc
Q 012294 275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSG--EVSYMDLRK 352 (466)
Q Consensus 275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g--~l~~~dlr~ 352 (466)
+...|.+-+..|+.+.-.++ ...|.+||..+++..--...++ .......++++..|+.....+| +||+.|+.+
T Consensus 207 ~~p~wSpDg~~la~~s~~~~----~~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~ 281 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERG----RSAIYVQDLATGQRELVASFRG-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS 281 (433)
T ss_pred ccccCCCCCCEEEEEecCCC----CcEEEEEECCCCCEEEeccCCC-CccCceECCCCCEEEEEEeCCCCceEEEEECCC
Confidence 34456555555554432222 3469999999887432221121 1235678899998876666555 599999865
Q ss_pred c
Q 012294 353 L 353 (466)
Q Consensus 353 ~ 353 (466)
-
T Consensus 282 g 282 (433)
T PRK04922 282 R 282 (433)
T ss_pred C
Confidence 3
No 272
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=31.37 E-value=9.4e+02 Score=28.47 Aligned_cols=185 Identities=14% Similarity=0.167 Sum_probs=111.3
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV 320 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~ 320 (466)
.++|.+|..-. +.-. +.--..-.|+.......+|...|+|+.|- .|-+-+..+...+..+.++.
T Consensus 75 ~~tv~~y~fps-------~~~~---~iL~Rftlp~r~~~v~g~g~~iaagsdD~------~vK~~~~~D~s~~~~lrgh~ 138 (933)
T KOG1274|consen 75 QNTVLRYKFPS-------GEED---TILARFTLPIRDLAVSGSGKMIAAGSDDT------AVKLLNLDDSSQEKVLRGHD 138 (933)
T ss_pred cceEEEeeCCC-------CCcc---ceeeeeeccceEEEEecCCcEEEeecCce------eEEEEeccccchheeecccC
Confidence 57888997766 2100 01111122555555556777777777433 47777777777778888887
Q ss_pred ccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEEC---CEEEEEeCCeEE
Q 012294 321 DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHA---NQVFCGKGGEIE 397 (466)
Q Consensus 321 d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~---~~lf~~~~~~~~ 397 (466)
-+...+..++.+.. .+|-..+|.|++-||..-.-...|.-+-..+-.-. .+ -.+++|-+- -.++..-++.|.
T Consensus 139 apVl~l~~~p~~~f-LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~---s~-i~~~~aW~Pk~g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 139 APVLQLSYDPKGNF-LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL---SR-ICTRLAWHPKGGTLAVPPVDNTVK 213 (933)
T ss_pred CceeeeeEcCCCCE-EEEEecCceEEEEEcccchhhhhcccCCccccccc---cc-eeeeeeecCCCCeEEeeccCCeEE
Confidence 67788888888776 34666999999999986443455555555332221 11 445555553 356666888999
Q ss_pred EeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeecceeEEEeeccceEEEeccC
Q 012294 398 LWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGGNKMFVTRKGQQTVEVWQSS 462 (466)
Q Consensus 398 v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg~r~f~~~~~~~~~~vw~~~ 462 (466)
|++.- .| ...-.+ |-|+.-. +=.++.|+==|-+|...--+- .|-||.+-
T Consensus 214 vy~r~----~w-----e~~f~L-r~~~~ss-----~~~~~~wsPnG~YiAAs~~~g-~I~vWnv~ 262 (933)
T KOG1274|consen 214 VYSRK----GW-----ELQFKL-RDKLSSS-----KFSDLQWSPNGKYIAASTLDG-QILVWNVD 262 (933)
T ss_pred EEccC----Cc-----eeheee-ccccccc-----ceEEEEEcCCCcEEeeeccCC-cEEEEecc
Confidence 99875 55 333333 6544322 223445555666666665543 46788764
No 273
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.96 E-value=20 Score=29.97 Aligned_cols=21 Identities=48% Similarity=0.819 Sum_probs=17.5
Q ss_pred EcCCchhHHHHhcccccCccc
Q 012294 61 IDRDPELFSILLSLLRTGNLP 81 (466)
Q Consensus 61 iDRDp~~F~~IL~ylrtG~l~ 81 (466)
+..||++|++||++|+.+.-+
T Consensus 39 v~~dp~VFriildLL~~nVsP 59 (88)
T PF12926_consen 39 VPMDPEVFRIILDLLRLNVSP 59 (88)
T ss_pred CCcChHHHHHHHHHHHcCCCH
Confidence 567999999999999985543
No 274
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.58 E-value=3.7e+02 Score=31.10 Aligned_cols=132 Identities=22% Similarity=0.367 Sum_probs=74.3
Q ss_pred ceEEEEeCCCCeeeeEEcCCcccccceeeec--CCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCcccccccccc-
Q 012294 300 GNIKFWDIRSGNVAWEVKDEVDCFSDVTVSD--NLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEG- 376 (466)
Q Consensus 300 ~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~--~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~- 376 (466)
.+|-.||.|+++.+-....-.++ +.++..+ ++--+.+||=.+|-+-+-+|-+-+ ..+. .|+ .+.-
T Consensus 43 E~vn~WdlRtge~~~~l~~~~~k-~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-----~~~t-----fng-HK~AV 110 (888)
T KOG0306|consen 43 EQVNIWDLRTGEIEKKLILLKKK-AEVTCLRSSDDILLLAVGYADGSVQIFSLESEE-----ILIT-----FNG-HKAAV 110 (888)
T ss_pred ccEeEEeeecchhhhhhhhhccc-ceEEEeeccCCcceEEEEecCceEEeeccCCCc-----eeee-----ecc-cccce
Confidence 36999999999766444432211 2222222 344445788899996555554422 1121 121 1110
Q ss_pred ceeEEEEECCEEEEE-eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCCceEEEeeec-ceeEEEeeccc
Q 012294 377 FGCKIECHANQVFCG-KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGSKITNLSFGG-NKMFVTRKGQQ 454 (466)
Q Consensus 377 ~~~~~~~~~~~lf~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~i~~~~~gg-~r~f~~~~~~~ 454 (466)
.--+..-.|.+|-.+ ++++|-||-=|. .+++||= = ..+-.||++-|=+ ++.-|+=.--.
T Consensus 111 t~l~fd~~G~rlaSGskDt~IIvwDlV~------------E~Gl~rL--~-----GHkd~iT~~~F~~~~~~lvS~sKDs 171 (888)
T KOG0306|consen 111 TTLKFDKIGTRLASGSKDTDIIVWDLVG------------EEGLFRL--R-----GHKDSITQALFLNGDSFLVSVSKDS 171 (888)
T ss_pred EEEEEcccCceEeecCCCccEEEEEecc------------ceeeEEe--e-----cchHHHhHHhccCCCeEEEEeccCc
Confidence 222333334454443 889999998871 3445652 1 1234677776644 88888888888
Q ss_pred eEEEeccC
Q 012294 455 TVEVWQSS 462 (466)
Q Consensus 455 ~~~vw~~~ 462 (466)
-+-+|+-.
T Consensus 172 ~iK~WdL~ 179 (888)
T KOG0306|consen 172 MIKFWDLE 179 (888)
T ss_pred eEEEEecc
Confidence 88888744
No 275
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=29.01 E-value=2.8e+02 Score=30.61 Aligned_cols=83 Identities=14% Similarity=0.275 Sum_probs=52.9
Q ss_pred ceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEec-cCCcc--cccccccc
Q 012294 300 GNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLG-DGRKM--VNGKRKEG 376 (466)
Q Consensus 300 ~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~-~~~~~--m~~~~~~~ 376 (466)
..|.+|+ .+++.|+-.- .|+---+++.+.| .-.||...|-.+++|--+-.- +-+. +..+. |.= .+.|
T Consensus 390 k~v~lW~--~~k~~wt~~~-~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~l----v~~~~d~~~ls~v~y-sp~G 459 (626)
T KOG2106|consen 390 KHVRLWN--DHKLEWTKII-EDPAECADFHPSG--VVAVGTATGRWFVLDTETQDL----VTIHTDNEQLSVVRY-SPDG 459 (626)
T ss_pred ceEEEcc--CCceeEEEEe-cCceeEeeccCcc--eEEEeeccceEEEEeccccee----EEEEecCCceEEEEE-cCCC
Confidence 3799999 7888898642 2222344566666 667888999999998776321 1111 11111 332 3556
Q ss_pred ceeEEEEECCEEEEEe
Q 012294 377 FGCKIECHANQVFCGK 392 (466)
Q Consensus 377 ~~~~~~~~~~~lf~~~ 392 (466)
....+..++|.||.-|
T Consensus 460 ~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYR 475 (626)
T ss_pred CEEEEecCCCeEEEEE
Confidence 8888888999888754
No 276
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=28.91 E-value=2.2e+02 Score=32.81 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=63.1
Q ss_pred CCeeEEEecCCCCccccccccc-cccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 241 SNSIMVYDINSLKPVNEIGQNE-IYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~-~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
...|-+||.+. |+|. .|.|..-......|+..=+ ..||++...+ ..++..||.-+|+||=.+-+|
T Consensus 617 Drnirif~i~s-------gKq~k~FKgs~~~eG~lIKv~lDP--SgiY~atScs-----dktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 617 DRNIRIFDIES-------GKQVKSFKGSRDHEGDLIKVILDP--SGIYLATSCS-----DKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred ccceEEEeccc-------cceeeeecccccCCCceEEEEECC--CccEEEEeec-----CCceEEEEeccchhhhhhcCc
Confidence 35677888888 6655 3655544444555665443 3467777643 337999999999999999999
Q ss_pred cccccceeeecCCCceEEEEEeeCceeEeec
Q 012294 320 VDCFSDVTVSDNLSAIYKVGINSGEVSYMDL 350 (466)
Q Consensus 320 ~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dl 350 (466)
..-..+|-...|...|-.|- -+|++|+=.|
T Consensus 683 sE~VTG~kF~nDCkHlISvs-gDgCIFvW~l 712 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVS-GDGCIFVWKL 712 (1080)
T ss_pred chheeeeeecccchhheeec-CCceEEEEEC
Confidence 66667777777777754332 4667666443
No 277
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=28.67 E-value=4.4e+02 Score=27.55 Aligned_cols=68 Identities=21% Similarity=0.459 Sum_probs=41.3
Q ss_pred eEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeC
Q 012294 229 HLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDI 307 (466)
Q Consensus 229 ~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDp 307 (466)
.+.| |+.+| .|-.||-.|..+...++ +. ..|...+.|..-+.+ ..... ...+|-+||.
T Consensus 36 ~~lAvGc~nG-----~vvI~D~~T~~iar~ls------aH---~~pi~sl~WS~dgr~-LltsS------~D~si~lwDl 94 (405)
T KOG1273|consen 36 DYLAVGCANG-----RVVIYDFDTFRIARMLS------AH---VRPITSLCWSRDGRK-LLTSS------RDWSIKLWDL 94 (405)
T ss_pred ceeeeeccCC-----cEEEEEccccchhhhhh------cc---ccceeEEEecCCCCE-eeeec------CCceeEEEec
Confidence 3444 77655 57899999944222222 11 134567788754444 44443 2458999999
Q ss_pred CCCeeeeEEc
Q 012294 308 RSGNVAWEVK 317 (466)
Q Consensus 308 rt~~~vW~~~ 317 (466)
.+++++.+..
T Consensus 95 ~~gs~l~rir 104 (405)
T KOG1273|consen 95 LKGSPLKRIR 104 (405)
T ss_pred cCCCceeEEE
Confidence 9998775543
No 278
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=28.65 E-value=64 Score=33.98 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=49.2
Q ss_pred CeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccccC
Q 012294 284 NLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLG 354 (466)
Q Consensus 284 ~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~ 354 (466)
+-+||.+| - .|+.||++-+++|-+++=..|.+..+...+-.-.|-..|+-++.+.+-|||...
T Consensus 159 ~~~FaTcG-------e-~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~ 221 (433)
T KOG0268|consen 159 NSVFATCG-------E-QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS 221 (433)
T ss_pred cccccccC-------c-eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC
Confidence 44556665 1 599999999998855554457777777788888888899999999999999854
No 279
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=28.10 E-value=2.7e+02 Score=28.86 Aligned_cols=31 Identities=35% Similarity=0.745 Sum_probs=26.4
Q ss_pred cceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCC
Q 012294 274 ATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSG 310 (466)
Q Consensus 274 ~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~ 310 (466)
.|.+.|.+....+.+.|+-|| .|++||.|.-
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg------~irlWDiRra 221 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADG------AIRLWDIRRA 221 (397)
T ss_pred eEEEEeccCceeEEEecCCCc------eEEEEEeecc
Confidence 567789999999999999655 7999998876
No 280
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=27.48 E-value=1.2e+02 Score=32.59 Aligned_cols=42 Identities=7% Similarity=0.339 Sum_probs=31.0
Q ss_pred CCCeEEeccCCccccccccccceeEEEEECCEEEEEeC--CeEEEeEee
Q 012294 356 SSEWICLGDGRKMVNGKRKEGFGCKIECHANQVFCGKG--GEIELWSEI 402 (466)
Q Consensus 356 ~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~~lf~~~~--~~~~v~~~~ 402 (466)
.+.|+-+.- +.- ..++.-++|+.-|++||++|. ..++||+-+
T Consensus 416 ~d~~vfi~K----l~~-s~~~~i~~ls~gGdRlfv~rs~~~~v~vw~~~ 459 (465)
T KOG2714|consen 416 DDQQVFIQK----LVP-SAGGLIVRLSSGGDRLFVVRSVESPVTVWEVL 459 (465)
T ss_pred hhhhhhhhh----hcc-ccCCcEEEEecCCeeEEEEEeccCceeEEEec
Confidence 455776654 221 245599999999999999975 468899876
No 281
>PRK01742 tolB translocation protein TolB; Provisional
Probab=26.79 E-value=7.6e+02 Score=25.94 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=42.0
Q ss_pred ceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeee-eE-EcCCcccccceeeecCCCceEEEEEeeC--ceeEeec
Q 012294 275 TKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVA-WE-VKDEVDCFSDVTVSDNLSAIYKVGINSG--EVSYMDL 350 (466)
Q Consensus 275 ~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~v-W~-~~~~~d~~~~~~v~~~~~~i~~v~~~~g--~l~~~dl 350 (466)
+...|.+-+..|+.+. ++. ....|.+||.++++.. .. ..++. .....++++..|+.....+| +||..|+
T Consensus 207 ~~p~wSPDG~~la~~s-~~~---~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 207 MSPAWSPDGSKLAYVS-FEN---KKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred ccceEcCCCCEEEEEE-ecC---CCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 3455666444443333 222 1346999999988632 22 11222 35678899998887666666 4777777
Q ss_pred cc
Q 012294 351 RK 352 (466)
Q Consensus 351 r~ 352 (466)
..
T Consensus 280 ~~ 281 (429)
T PRK01742 280 NG 281 (429)
T ss_pred CC
Confidence 43
No 282
>KOG4328 consensus WD40 protein [Function unknown]
Probab=26.11 E-value=1.9e+02 Score=31.34 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=52.7
Q ss_pred cceeeEEeeCC-eEEEEeecCCCCcccceEEEEeCCCCe----eeeEEcCCcccccceeeecCCCceEEEEEeeCceeEe
Q 012294 274 ATKLRWVSSYN-LLLASGSHSDISKVTGNIKFWDIRSGN----VAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYM 348 (466)
Q Consensus 274 ~~k~~~~~~~~-~Lyv~Gg~~g~~~~~~sVe~yDprt~~----~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~ 348 (466)
...+.|++..+ .|.++|-- .|.|-+||.++++ -|--+..|.-++..+...+.+-.-+-.-+++|.+...
T Consensus 189 it~l~fHPt~~~~lva~GdK------~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDK------GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred eEEEEecccCcceEEEEccC------CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 45678999888 66666653 4579999996443 3355666666667777887554433377899999999
Q ss_pred ecccc
Q 012294 349 DLRKL 353 (466)
Q Consensus 349 dlr~~ 353 (466)
||..+
T Consensus 263 D~~~~ 267 (498)
T KOG4328|consen 263 DFEGN 267 (498)
T ss_pred eecch
Confidence 99875
No 283
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=26.11 E-value=65 Score=30.04 Aligned_cols=83 Identities=12% Similarity=0.178 Sum_probs=57.8
Q ss_pred CeEEEEE-CCeEEEEeHHHhhccCCCCccccccCC-----C--ce-eEcCCchhHHHHhcccccCccc------------
Q 012294 23 NIVTIDV-GGQIFQTTKQTLALAGPKSLLSKLADS-----T--HR-FIDRDPELFSILLSLLRTGNLP------------ 81 (466)
Q Consensus 23 ~~V~LnV-GG~~F~t~~~tL~~~~p~s~f~~mf~~-----~--~~-fiDRDp~~F~~IL~ylrtG~l~------------ 81 (466)
..|+|.- .|+.|++...++.+ +..+.+++.+ + ++ .....+.+|..||.|.+.=+-.
T Consensus 5 ~~ikL~SsDG~~f~ve~~~a~~---s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~ 81 (162)
T KOG1724|consen 5 KKIKLESSDGEIFEVEEEVARQ---SQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPE 81 (162)
T ss_pred CeEEEEccCCceeehhHHHHHH---hHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccc
Confidence 3455544 48999999998877 2366666653 3 44 5568999999999999873321
Q ss_pred ---cCC--------CCcChHHHHHhhccccchhhHHhh
Q 012294 82 ---SKA--------KAFDIEDLIEESKFYNIESLLINS 108 (466)
Q Consensus 82 ---~~~--------~~~~~~~Ll~EA~f~~l~~l~~~~ 108 (466)
+++ +...+-+|+.+|+|+.|..|+..|
T Consensus 82 ~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ 119 (162)
T KOG1724|consen 82 ETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLT 119 (162)
T ss_pred cCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHH
Confidence 000 011356789999999999999876
No 284
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=25.07 E-value=1.6e+02 Score=32.79 Aligned_cols=108 Identities=19% Similarity=0.293 Sum_probs=72.9
Q ss_pred CCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCcceeeEEe-eCCeEEEEeecCCCCcccceEEEE
Q 012294 227 DKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVS-SYNLLLASGSHSDISKVTGNIKFW 305 (466)
Q Consensus 227 ~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~-~~~~Lyv~Gg~~g~~~~~~sVe~y 305 (466)
+|.+.++|.+. .-+.+|||-.-+++..|...-. +|.. ....++ .+|.|.+.|. | ...|.+|
T Consensus 61 dG~lL~SGSDD----~r~ivWd~~~~KllhsI~TgHt--aNIF------svKFvP~tnnriv~sgA--g----Dk~i~lf 122 (758)
T KOG1310|consen 61 DGELLASGSDD----TRLIVWDPFEYKLLHSISTGHT--ANIF------SVKFVPYTNNRIVLSGA--G----DKLIKLF 122 (758)
T ss_pred CCCEEeecCCc----ceEEeecchhcceeeeeecccc--ccee------EEeeeccCCCeEEEecc--C----cceEEEE
Confidence 55666733323 3478999999788887776320 1211 233444 6777777776 2 3379999
Q ss_pred eCCC----------CeeeeEEcCCcccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294 306 DIRS----------GNVAWEVKDEVDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 306 Dprt----------~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
|..+ .+..-.|.-|.++.-.+++++.+-..|=.|+.+|++-=-|+|.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9773 3333444455677778888889988899999999998888887
No 285
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=24.29 E-value=2.3e+02 Score=33.07 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=32.0
Q ss_pred cceEEEEeCCCCeeeeEEcCC-cccccceeeecCCCceEEEEE
Q 012294 299 TGNIKFWDIRSGNVAWEVKDE-VDCFSDVTVSDNLSAIYKVGI 340 (466)
Q Consensus 299 ~~sVe~yDprt~~~vW~~~~~-~d~~~~~~v~~~~~~i~~v~~ 340 (466)
.|.|++|| +.+.-..+..+. +|++.+++|+.||..|-.-|-
T Consensus 597 ~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 597 KGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred CCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 55799999 455546666655 999999999999998766654
No 286
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=24.03 E-value=1e+02 Score=31.22 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=40.4
Q ss_pred CCCceeeecCCcEEEEcC--CceeeEecCC-CCCCCccccceeeeeecccCC-cEEEEec
Q 012294 133 SPSAIATTNYGTLHVSHG--SKITSFDWSM-RKKSTILTHFTAVDSLLALSP-GVAAAGA 188 (466)
Q Consensus 133 ~~~a~~a~~~g~lyva~G--G~ve~YDW~~-a~m~~~R~~~~~v~sl~~l~~-~lYaiGG 188 (466)
....++-.+|++|.+.-| |.+..|+|.. .++-....+-+.+.++++-.+ .|.|.++
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc
Confidence 333446678999996555 4567899988 887666666677788888777 6777776
No 287
>PLN03219 uncharacterized protein; Provisional
Probab=23.74 E-value=1.5e+02 Score=25.90 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=37.8
Q ss_pred CCCCCeEEEEECC----eEEEEeHHHhhccCCCCccccccCC----------Cc-eeEcCCchhHHHHhcc
Q 012294 19 SIDSNIVTIDVGG----QIFQTTKQTLALAGPKSLLSKLADS----------TH-RFIDRDPELFSILLSL 74 (466)
Q Consensus 19 ~~~~~~V~LnVGG----~~F~t~~~tL~~~~p~s~f~~mf~~----------~~-~fiDRDp~~F~~IL~y 74 (466)
..+..-+.+.||. ++|.+...-|.. | .|..|+.. ++ +-|--|.+.|+.||..
T Consensus 38 ~vpkGh~aVYVG~~~E~kRFvVPi~yL~h--P--~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 38 LVPKGHVAVYVGEQMEKKRFVVPISYLNH--P--LFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS 104 (108)
T ss_pred CCCCCeEEEEECCCCCceEEEEEHHHcCC--h--HHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence 3445678889985 899999998875 5 88888762 12 5666677777777764
No 288
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=23.58 E-value=8.6e+02 Score=25.40 Aligned_cols=177 Identities=17% Similarity=0.183 Sum_probs=94.8
Q ss_pred eecCCC--CCceeEEEEECCeEEE-EecCCCcCCCeeEEEecCCCCccccccccccccCCceeecCccee----eEEeeC
Q 012294 211 ENVTRS--SSTVQAIGSSDKHLFV-SFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKL----RWVSSY 283 (466)
Q Consensus 211 ~~va~M--r~~~~Ava~l~~~IYa-Gg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~----~~~~~~ 283 (466)
..+..| |++.-|+ | ||..+....|.|.+||-..-+++.|+.... .+-+.++ -.+++.
T Consensus 49 ~~~veMLfR~N~laL--------VGGg~~pky~pNkviIWDD~k~~~i~el~f~~--------~I~~V~l~r~riVvvl~ 112 (346)
T KOG2111|consen 49 FKIVEMLFRSNYLAL--------VGGGSRPKYPPNKVIIWDDLKERCIIELSFNS--------EIKAVKLRRDRIVVVLE 112 (346)
T ss_pred hhhhhHhhhhceEEE--------ecCCCCCCCCCceEEEEecccCcEEEEEEecc--------ceeeEEEcCCeEEEEec
Confidence 356667 7776532 3 555567679999999977766666655422 2222222 244577
Q ss_pred CeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeeecCCCceEEEEE--eeCceeEeeccccCCCCCeEE
Q 012294 284 NLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVSDNLSAIYKVGI--NSGEVSYMDLRKLGDSSEWIC 361 (466)
Q Consensus 284 ~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~~~~~~i~~v~~--~~g~l~~~dlr~~~~~~~W~~ 361 (466)
+.|||-.=.+.+. -+...|-+.|= .+ -+.++...+.-+-++- +-|.|=++||.+... ++-.-
T Consensus 113 ~~I~VytF~~n~k----~l~~~et~~NP-------kG----lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~-~~p~~ 176 (346)
T KOG2111|consen 113 NKIYVYTFPDNPK----LLHVIETRSNP-------KG----LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP-NAPSI 176 (346)
T ss_pred CeEEEEEcCCChh----heeeeecccCC-------Cc----eEeecCCCCceEEEcCCCccceEEEEEhhhcCc-CCceE
Confidence 7877755332222 34444444431 02 1223332222222333 679999999999873 31111
Q ss_pred eccCCccccccccccceeEEEEE----CCEEEEE---eCCeEEEeEeeeecCCCCCCCCCcccceeeccccCccccCCCC
Q 012294 362 LGDGRKMVNGKRKEGFGCKIECH----ANQVFCG---KGGEIELWSEIVMGSRKSREGGPLEERVFRKNLMGRVTDMGGS 434 (466)
Q Consensus 362 ~~~~~~~m~~~~~~~~~~~~~~~----~~~lf~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 434 (466)
+.. +-..|+|. .|-+.|+ +|-=|-+|.-. +. .-+-| +|| -..+.
T Consensus 177 I~A------------H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~----~g----~~l~E--~RR-------G~d~A 227 (346)
T KOG2111|consen 177 INA------------HDSDIACVALNLQGTLVATASTKGTLIRIFDTE----DG----TLLQE--LRR-------GVDRA 227 (346)
T ss_pred EEc------------ccCceeEEEEcCCccEEEEeccCcEEEEEEEcC----CC----cEeee--eec-------CCchh
Confidence 111 22233333 2555554 55556778764 22 22233 466 14667
Q ss_pred ceEEEeeecceeEE
Q 012294 435 KITNLSFGGNKMFV 448 (466)
Q Consensus 435 ~i~~~~~gg~r~f~ 448 (466)
.|..|+|-=|-.++
T Consensus 228 ~iy~iaFSp~~s~L 241 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWL 241 (346)
T ss_pred eEEEEEeCCCccEE
Confidence 89999987765443
No 289
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=22.82 E-value=9.3e+02 Score=25.54 Aligned_cols=121 Identities=8% Similarity=-0.022 Sum_probs=0.0
Q ss_pred CceeecCCC-CCceeEEEEECCeEEEEecCCCcCCCeeEEEecCCCCccccccccccccCCcee-----ecCcceeeEEe
Q 012294 208 LNWENVTRS-SSTVQAIGSSDKHLFVSFESGRRNSNSIMVYDINSLKPVNEIGQNEIYGTDIES-----AIPATKLRWVS 281 (466)
Q Consensus 208 ~~W~~va~M-r~~~~Ava~l~~~IYaGg~~g~~~l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~-----~~~~~k~~~~~ 281 (466)
+.|+.+..+ ...-- ++..+|++|| -.. ...+.++|.+- ..++ -+..|. ........++.
T Consensus 190 ~~Wt~l~~~~~~~~D-Ii~~kGkfYA----vD~-~G~l~~i~~~l-------~i~~--v~~~i~~~~~~g~~~~~~yLVE 254 (373)
T PLN03215 190 NVLKALKQMGYHFSD-IIVHKGQTYA----LDS-IGIVYWINSDL-------EFSR--FGTSLDENITDGCWTGDRRFVE 254 (373)
T ss_pred CeeeEccCCCceeeE-EEEECCEEEE----EcC-CCeEEEEecCC-------ceee--ecceecccccCCcccCceeEEE
Q ss_pred eCCeEEEEeecCCCCccc-----------ceEEEE--eCCCCeeeeEEcCC-------cccccceeeecCCCceEEEEEe
Q 012294 282 SYNLLLASGSHSDISKVT-----------GNIKFW--DIRSGNVAWEVKDE-------VDCFSDVTVSDNLSAIYKVGIN 341 (466)
Q Consensus 282 ~~~~Lyv~Gg~~g~~~~~-----------~sVe~y--Dprt~~~vW~~~~~-------~d~~~~~~v~~~~~~i~~v~~~ 341 (466)
..|.||.+..+-...... ..+++| |.+..+ |.-.+. .-.-..+.+.+..-. |.+
T Consensus 255 s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~--WveV~sLgd~aLFlG~~~s~sv~a~e~p----G~k 328 (373)
T PLN03215 255 CCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAK--WMEVKTLGDNAFVMATDTCFSVLAHEFY----GCL 328 (373)
T ss_pred ECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCc--EEEecccCCeEEEEECCccEEEecCCCC----Ccc
Q ss_pred eCceeEee
Q 012294 342 SGEVSYMD 349 (466)
Q Consensus 342 ~g~l~~~d 349 (466)
.+++|+.|
T Consensus 329 ~NcIYFtd 336 (373)
T PLN03215 329 PNSIYFTE 336 (373)
T ss_pred CCEEEEEC
No 290
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=22.16 E-value=1.9e+02 Score=26.27 Aligned_cols=61 Identities=25% Similarity=0.349 Sum_probs=38.7
Q ss_pred CCeeEEEecCCCCccccccccccc--cCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEc
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIY--GTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVK 317 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~--~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~ 317 (466)
.+++.+||.+.+ ....| =.++-..+.-.++.+ ...-|.++|| +++|.-||-.-+++.|+..
T Consensus 72 ~t~llaYDV~~N-------~d~Fyke~~DGvn~i~~g~~~~--~~~~l~ivGG-------ncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 72 QTSLLAYDVENN-------SDLFYKEVPDGVNAIVIGKLGD--IPSPLVIVGG-------NCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred cceEEEEEcccC-------chhhhhhCccceeEEEEEecCC--CCCcEEEECc-------eEEEEEeCCCCcEEEEEec
Confidence 478999999983 32211 112222222222222 3566777888 6789999999999999874
No 291
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=21.90 E-value=3.2e+02 Score=28.93 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=52.8
Q ss_pred CeeEEEecCCCCccccccccccccCCceeecCcceeeEEe--eCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCC
Q 012294 242 NSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVS--SYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDE 319 (466)
Q Consensus 242 ~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~--~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~ 319 (466)
.+|-+||..+.+++.+|.... .| +-.++-+. ..|...|-= ++. ..+.|-+||..+=+.|=....|
T Consensus 106 e~IyIydI~~MklLhTI~t~~---~n------~~gl~AlS~n~~n~ylAyp---~s~-t~GdV~l~d~~nl~~v~~I~aH 172 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTP---PN------PKGLCALSPNNANCYLAYP---GST-TSGDVVLFDTINLQPVNTINAH 172 (391)
T ss_pred ccEEEEecccceeehhhhccC---CC------ccceEeeccCCCCceEEec---CCC-CCceEEEEEcccceeeeEEEec
Confidence 345568888888888777742 01 11111111 233333332 332 4789999999999999888899
Q ss_pred cccccceeeecCCCc
Q 012294 320 VDCFSDVTVSDNLSA 334 (466)
Q Consensus 320 ~d~~~~~~v~~~~~~ 334 (466)
....|-++++.+|..
T Consensus 173 ~~~lAalafs~~G~l 187 (391)
T KOG2110|consen 173 KGPLAALAFSPDGTL 187 (391)
T ss_pred CCceeEEEECCCCCE
Confidence 888899999998877
No 292
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.59 E-value=2.4e+02 Score=31.78 Aligned_cols=133 Identities=11% Similarity=0.239 Sum_probs=86.1
Q ss_pred CCeeEEEecCCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCc
Q 012294 241 SNSIMVYDINSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEV 320 (466)
Q Consensus 241 l~sVE~YDp~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~ 320 (466)
..+|.+++...-+.-.++.+. ..-++....++....|+|+.- .+|+.||.-...+|.+...-.
T Consensus 545 ~~~VliHQLSK~~sQ~PF~ks---------kG~vq~v~FHPs~p~lfVaTq--------~~vRiYdL~kqelvKkL~tg~ 607 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKS---------KGLVQRVKFHPSKPYLFVATQ--------RSVRIYDLSKQELVKKLLTGS 607 (733)
T ss_pred cceEEEEecccccccCchhhc---------CCceeEEEecCCCceEEEEec--------cceEEEehhHHHHHHHHhcCC
Confidence 468888888772211222111 112455667788999999875 379999999988887776665
Q ss_pred ccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCeEEeccCCccccccccccceeEEEEECC-EEEEE--eCCeEE
Q 012294 321 DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEWICLGDGRKMVNGKRKEGFGCKIECHAN-QVFCG--KGGEIE 397 (466)
Q Consensus 321 d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W~~~~~~~~~m~~~~~~~~~~~~~~~~~-~lf~~--~~~~~~ 397 (466)
-=++.|++.+.|.-|+ +++++..+-..||-... -||-.+.-- .. ..-.++.|.. -|||+ -++++-
T Consensus 608 kwiS~msihp~GDnli-~gs~d~k~~WfDldlss--kPyk~lr~H--------~~-avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSS--KPYKTLRLH--------EK-AVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred eeeeeeeecCCCCeEE-EecCCCeeEEEEcccCc--chhHHhhhh--------hh-hhhhhhhccccceeeeecCCCcEE
Confidence 5558888999766665 88899998888887643 344433321 11 2234555554 57877 456777
Q ss_pred EeEee
Q 012294 398 LWSEI 402 (466)
Q Consensus 398 v~~~~ 402 (466)
||-+-
T Consensus 676 Vfhg~ 680 (733)
T KOG0650|consen 676 VFHGM 680 (733)
T ss_pred EEeee
Confidence 77764
No 293
>PF03835 Rad4: Rad4 transglutaminase-like domain; InterPro: IPR018325 RAD4/Xp-C proteins contain an ancient transglutaminase fold that is also found in peptide-N-glycanases (PNGases), which remove glycans from glycoproteins during their degradation. The PNGases retain the catalytic triad that is typical of this fold and are predicted to have a reaction mechanism similar to that involved in transglutamination. In contrast, the RAD4/Xp-C proteins are predicted to be inactive and are likely to only possess the interaction function in DNA repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0005634 nucleus; PDB: 2QSG_A 2QSF_A 2QSH_A 1X3W_A 1X3Z_A 3ESW_A.
Probab=20.41 E-value=1.8e+02 Score=26.00 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=29.4
Q ss_pred eEEEEeCCCCeeeeEEcCCc-------ccccceeeecCCCceEEEEEeeCceeEeeccc
Q 012294 301 NIKFWDIRSGNVAWEVKDEV-------DCFSDVTVSDNLSAIYKVGINSGEVSYMDLRK 352 (466)
Q Consensus 301 sVe~yDprt~~~vW~~~~~~-------d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~ 352 (466)
=+|+|++..++ |-..+|. +++-+..-...+..-|+|+.. ++-++-|...
T Consensus 38 W~EV~~~~~~r--WI~VDp~~~~~~~~~~~ep~~~~~~~~~~YViA~d-~~~~~kDVT~ 93 (145)
T PF03835_consen 38 WVEVYSPEEKR--WIHVDPVVGKIIKVSCDEPLEENANNPMSYVIAFD-NDGYAKDVTR 93 (145)
T ss_dssp EEEEEETTTTE--EEEEETTTS-EESTBTTSTCCCCCS--B-EEEEE--CTTEEEE-HH
T ss_pred EEEEEecCCCe--EEEeeeeccccccccccCchhhccCCceEEEEEEe-CCCCEEEchH
Confidence 39999999999 9998773 344444444566788877662 2334566543
No 294
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=20.30 E-value=5.9e+02 Score=30.30 Aligned_cols=146 Identities=18% Similarity=0.140 Sum_probs=82.7
Q ss_pred cccCCcEEEEecccCCCceeccceeeeeCCCCceeecCCC---CCceeEEEEECCeEEEEecCCCc----CCCeeEEEec
Q 012294 177 LALSPGVAAAGATDFSGLQVLDLENGYVKETLNWENVTRS---SSTVQAIGSSDKHLFVSFESGRR----NSNSIMVYDI 249 (466)
Q Consensus 177 ~~l~~~lYaiGG~~~~g~~~l~svE~ydp~t~~W~~va~M---r~~~~Ava~l~~~IYaGg~~g~~----~l~sVE~YDp 249 (466)
..-+++..-+|- ..|. |--.||.+.+ .+-.. .....+.-+-+|.|.+-|++.++ ...-|-+||.
T Consensus 183 mR~Nnr~lf~G~--t~G~-----V~LrD~~s~~--~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 183 MRYNNRNLFCGD--TRGT-----VFLRDPNSFE--TIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred EEecCcEEEeec--ccce-----EEeecCCcCc--eeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhh
Confidence 345667777766 4453 2233444332 11111 12233344556677663333443 2457899999
Q ss_pred CCCCccccccccccccCCceeecCcceeeEEeeCCeEEEEeecCCCCcccceEEEEeCCCCeeeeEEcCCcccccceeee
Q 012294 250 NSLKPVNEIGQNEIYGTDIESAIPATKLRWVSSYNLLLASGSHSDISKVTGNIKFWDIRSGNVAWEVKDEVDCFSDVTVS 329 (466)
Q Consensus 250 ~t~~~~~~~~~~~~~~~~~w~~~~~~k~~~~~~~~~Lyv~Gg~~g~~~~~~sVe~yDprt~~~vW~~~~~~d~~~~~~v~ 329 (466)
.+++.+++|+-.- .|.-++.++.----.++...+|.+....+++.=+|..+. ......+.-...++++
T Consensus 254 Rmmral~PI~~~~----------~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~--~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 254 RMMRALSPIQFPY----------GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGV--KMVNPNGSGISAFDIS 321 (1118)
T ss_pred hhhhccCCccccc----------CchhhhhcccccceEEEEecccceeeccccccCCCccce--eEEccCCCcceeEEec
Confidence 9988888887632 233345555444445566666766566667788888776 4444444446677777
Q ss_pred cCCCceEEEEEeeCc
Q 012294 330 DNLSAIYKVGINSGE 344 (466)
Q Consensus 330 ~~~~~i~~v~~~~g~ 344 (466)
..+..| ++|-+.|.
T Consensus 322 sn~~al-afgd~~g~ 335 (1118)
T KOG1275|consen 322 SNGDAL-AFGDHEGH 335 (1118)
T ss_pred CCCceE-EEecccCc
Confidence 777763 24446666
No 295
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=20.24 E-value=4.2e+02 Score=32.45 Aligned_cols=60 Identities=22% Similarity=0.407 Sum_probs=45.7
Q ss_pred cceEEEEeCCCCeeeeEEcCC--cccccceeeecCCCceEEEEEeeCceeEeeccccCCCCCe
Q 012294 299 TGNIKFWDIRSGNVAWEVKDE--VDCFSDVTVSDNLSAIYKVGINSGEVSYMDLRKLGDSSEW 359 (466)
Q Consensus 299 ~~sVe~yDprt~~~vW~~~~~--~d~~~~~~v~~~~~~i~~v~~~~g~l~~~dlr~~~~~~~W 359 (466)
++.|=.||+|+....|...-+ .--...+.+++.++ -+++|...|.|-.=|||.-.-...|
T Consensus 1172 ~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1172 LSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred ccceEEecchhhhhHHhhhcCccccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecc
Confidence 556889999999999998755 22346677888888 5778999999999999985433334
Done!