Query 012295
Match_columns 466
No_of_seqs 115 out of 1234
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 01:07:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 2.5E-59 5.4E-64 460.9 32.2 407 23-463 30-437 (437)
2 PTZ00206 amino acid transporte 100.0 1.4E-55 3E-60 447.2 29.8 400 29-461 58-465 (467)
3 KOG1304 Amino acid transporter 100.0 3.4E-55 7.3E-60 423.7 30.9 390 28-460 44-449 (449)
4 PLN03074 auxin influx permease 100.0 4.8E-48 1E-52 390.1 31.6 390 28-465 43-456 (473)
5 PF01490 Aa_trans: Transmembra 100.0 1.9E-52 4.1E-57 422.2 -1.4 403 29-457 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 3.6E-44 7.9E-49 351.9 27.9 401 28-464 3-409 (411)
7 KOG4303 Vesicular inhibitory a 100.0 9.3E-41 2E-45 304.3 7.4 405 25-464 111-518 (524)
8 COG0814 SdaC Amino acid permea 100.0 4.4E-32 9.6E-37 270.3 31.2 393 27-455 5-410 (415)
9 PRK10483 tryptophan permease; 99.9 1.9E-24 4.2E-29 211.9 29.6 355 26-428 6-373 (414)
10 PRK09664 tryptophan permease T 99.9 2.6E-24 5.6E-29 210.8 28.0 356 28-428 6-374 (415)
11 PF03222 Trp_Tyr_perm: Tryptop 99.9 5.2E-24 1.1E-28 211.0 29.3 352 30-430 2-367 (394)
12 PRK15132 tyrosine transporter 99.9 1.9E-23 4.2E-28 205.9 28.7 348 32-429 4-363 (403)
13 TIGR00837 araaP aromatic amino 99.9 3.8E-23 8.3E-28 206.4 23.4 345 37-428 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 2.2E-21 4.7E-26 190.3 32.0 361 35-427 23-414 (443)
15 TIGR00814 stp serine transport 99.9 7.6E-20 1.7E-24 181.0 25.0 360 35-428 7-379 (397)
16 PRK10655 potE putrescine trans 99.7 5.1E-14 1.1E-18 143.3 31.7 240 27-292 4-244 (438)
17 PRK15049 L-asparagine permease 99.6 2E-13 4.3E-18 140.7 30.3 368 26-428 25-406 (499)
18 PRK10644 arginine:agmatin anti 99.6 4E-13 8.7E-18 137.0 32.3 241 26-293 5-247 (445)
19 PRK10435 cadB lysine/cadaverin 99.6 3.1E-13 6.6E-18 137.3 30.8 244 26-296 2-246 (435)
20 TIGR03810 arg_ornith_anti argi 99.6 1E-12 2.2E-17 134.7 30.9 285 29-332 1-294 (468)
21 PRK10249 phenylalanine transpo 99.6 6.1E-13 1.3E-17 135.9 29.1 243 26-292 18-264 (458)
22 PRK11387 S-methylmethionine tr 99.6 1E-12 2.2E-17 134.9 29.7 245 25-292 10-261 (471)
23 PRK10746 putative transport pr 99.6 1.5E-12 3.3E-17 132.9 30.3 369 26-428 7-388 (461)
24 COG1113 AnsP Gamma-aminobutyra 99.6 2.3E-13 4.9E-18 132.1 22.5 365 24-428 8-389 (462)
25 TIGR00905 2A0302 transporter, 99.6 3E-12 6.4E-17 131.5 32.1 249 27-294 5-255 (473)
26 TIGR00909 2A0306 amino acid tr 99.6 1.5E-12 3.2E-17 132.3 28.1 283 28-332 2-294 (429)
27 TIGR01773 GABAperm gamma-amino 99.6 3.1E-12 6.8E-17 130.7 30.4 243 26-293 9-257 (452)
28 PRK11049 D-alanine/D-serine/gl 99.6 2.5E-12 5.3E-17 131.9 29.6 244 26-293 17-267 (469)
29 PRK10580 proY putative proline 99.6 3.9E-12 8.4E-17 130.1 31.0 243 25-291 5-253 (457)
30 PRK10238 aromatic amino acid t 99.6 2E-12 4.4E-17 132.0 28.6 239 26-288 9-251 (456)
31 PRK11021 putative transporter; 99.6 8.1E-12 1.8E-16 126.0 32.4 229 32-291 2-231 (410)
32 TIGR00913 2A0310 amino acid pe 99.6 7E-12 1.5E-16 129.2 31.1 242 28-291 1-251 (478)
33 PRK10836 lysine transporter; P 99.5 1.3E-11 2.8E-16 127.4 30.8 244 24-292 10-260 (489)
34 TIGR00906 2A0303 cationic amin 99.5 7.9E-12 1.7E-16 130.2 28.8 295 25-332 24-329 (557)
35 KOG1287 Amino acid transporter 99.5 2.1E-12 4.6E-17 127.4 21.4 368 24-429 7-387 (479)
36 TIGR00908 2A0305 ethanolamine 99.5 1.2E-11 2.6E-16 126.1 27.2 239 26-290 4-244 (442)
37 TIGR00911 2A0308 L-type amino 99.5 2.2E-11 4.8E-16 126.0 27.5 249 25-293 38-291 (501)
38 TIGR00930 2a30 K-Cl cotranspor 99.5 2.7E-11 5.8E-16 132.2 28.4 251 27-291 74-334 (953)
39 PRK11357 frlA putative fructos 99.5 3.2E-11 6.9E-16 123.1 27.0 242 26-291 5-249 (445)
40 PRK10197 gamma-aminobutyrate t 99.4 1.1E-10 2.3E-15 119.0 27.5 347 40-427 3-367 (446)
41 PF13520 AA_permease_2: Amino 99.4 1.5E-10 3.3E-15 117.6 27.0 292 32-347 2-303 (426)
42 COG0833 LysP Amino acid transp 99.4 6.9E-10 1.5E-14 110.3 27.5 365 27-426 42-426 (541)
43 TIGR00912 2A0309 spore germina 99.4 1.2E-10 2.6E-15 115.5 22.4 238 30-299 2-240 (359)
44 COG0531 PotE Amino acid transp 99.3 2E-09 4.4E-14 110.6 28.8 251 25-298 8-262 (466)
45 TIGR03428 ureacarb_perm permea 99.2 1.9E-08 4E-13 103.6 31.8 253 26-291 10-267 (475)
46 PRK15238 inner membrane transp 99.2 3.2E-08 7E-13 102.4 31.3 253 27-292 5-266 (496)
47 TIGR00907 2A0304 amino acid pe 99.2 2.3E-08 5E-13 103.2 28.8 244 26-286 9-266 (482)
48 TIGR03813 put_Glu_GABA_T putat 99.2 2.8E-08 6.1E-13 102.3 28.7 243 31-296 3-253 (474)
49 TIGR00910 2A0307_GadC glutamat 99.1 3.1E-08 6.6E-13 102.5 27.6 238 28-290 3-247 (507)
50 KOG3832 Predicted amino acid t 99.0 9E-09 1.9E-13 88.8 12.7 220 35-263 16-302 (319)
51 KOG1286 Amino acid transporter 98.9 1.4E-08 2.9E-13 104.4 14.2 307 26-346 27-350 (554)
52 PF00324 AA_permease: Amino ac 98.9 1.2E-08 2.5E-13 105.2 12.0 275 40-332 6-304 (478)
53 PF03845 Spore_permease: Spore 98.9 4.1E-07 8.9E-12 88.6 21.5 236 30-299 1-236 (320)
54 TIGR00800 ncs1 NCS1 nucleoside 98.6 2E-05 4.2E-10 80.4 26.4 194 99-300 76-274 (442)
55 PRK11375 allantoin permease; P 98.5 0.00018 3.8E-09 74.0 29.1 183 99-290 89-280 (484)
56 KOG1289 Amino acid transporter 98.5 4E-05 8.6E-10 76.8 23.3 231 52-298 73-313 (550)
57 TIGR02358 thia_cytX probable h 98.3 0.0015 3.2E-08 65.3 29.0 227 33-299 7-234 (386)
58 COG3949 Uncharacterized membra 98.2 0.00058 1.2E-08 64.4 22.3 138 34-193 6-146 (349)
59 COG1457 CodB Purine-cytosine p 98.2 0.0016 3.5E-08 64.9 25.7 206 100-335 82-289 (442)
60 PF00474 SSF: Sodium:solute sy 98.0 0.00025 5.5E-09 71.5 17.7 148 29-198 6-156 (406)
61 PRK09442 panF sodium/panthothe 98.0 0.015 3.2E-07 60.1 30.9 150 28-198 40-194 (483)
62 TIGR00813 sss transporter, SSS 98.0 0.0027 5.8E-08 64.1 24.6 148 29-198 3-152 (407)
63 TIGR02119 panF sodium/pantothe 98.0 0.011 2.5E-07 60.8 29.5 149 28-198 39-193 (471)
64 PRK12488 acetate permease; Pro 98.0 0.023 5E-07 59.6 31.8 148 28-198 66-216 (549)
65 PRK11017 codB cytosine permeas 97.8 0.0084 1.8E-07 60.4 23.8 173 99-298 71-244 (404)
66 COG0591 PutP Na+/proline sympo 97.8 0.036 7.8E-07 57.3 28.1 149 28-197 37-190 (493)
67 COG1953 FUI1 Cytosine/uracil/t 97.7 0.07 1.5E-06 53.7 28.8 201 97-309 101-318 (497)
68 TIGR00796 livcs branched-chain 97.7 0.038 8.2E-07 54.7 25.1 222 39-295 3-243 (378)
69 COG1914 MntH Mn2+ and Fe2+ tra 97.6 0.071 1.5E-06 53.3 25.9 54 375-428 325-378 (416)
70 TIGR02121 Na_Pro_sym sodium/pr 97.5 0.11 2.3E-06 53.8 26.4 152 28-197 35-191 (487)
71 PRK09395 actP acetate permease 97.4 0.25 5.4E-06 52.0 31.6 148 28-197 68-217 (551)
72 TIGR02711 symport_actP cation/ 97.3 0.28 6E-06 51.5 31.8 147 28-197 66-215 (549)
73 PF02133 Transp_cyt_pur: Perme 97.3 0.0018 3.9E-08 66.1 11.2 248 27-295 5-259 (440)
74 TIGR03648 Na_symport_lg probab 97.3 0.31 6.7E-06 51.3 32.4 149 27-197 30-180 (552)
75 TIGR00835 agcS amino acid carr 97.2 0.1 2.2E-06 52.3 22.2 88 29-120 45-138 (425)
76 PRK15419 proline:sodium sympor 97.2 0.33 7.2E-06 50.4 26.6 153 27-198 38-196 (502)
77 PRK00701 manganese transport p 96.9 0.58 1.2E-05 47.6 26.7 46 99-144 94-139 (439)
78 KOG2082 K+/Cl- cotransporter K 96.8 0.16 3.5E-06 53.1 19.5 106 31-141 115-221 (1075)
79 KOG1288 Amino acid transporter 96.8 0.033 7.2E-07 57.4 14.4 229 50-291 88-348 (945)
80 PF02554 CstA: Carbon starvati 96.7 0.091 2E-06 50.9 15.9 114 23-142 44-157 (376)
81 PRK10484 putative transporter; 96.4 1.6 3.4E-05 45.7 31.3 156 27-198 36-197 (523)
82 PF01235 Na_Ala_symp: Sodium:a 96.3 0.79 1.7E-05 45.8 20.0 63 25-88 13-79 (416)
83 PF01566 Nramp: Natural resist 96.3 0.56 1.2E-05 46.4 19.3 82 99-194 42-125 (358)
84 COG4147 DhlC Predicted symport 95.5 3.1 6.7E-05 41.8 28.1 178 98-294 103-293 (529)
85 PRK15015 carbon starvation pro 95.0 0.27 5.8E-06 51.2 11.5 113 22-140 74-186 (701)
86 COG1966 CstA Carbon starvation 95.0 0.67 1.5E-05 47.2 14.0 111 22-138 43-153 (575)
87 KOG2083 Na+/K+ symporter [Inor 94.8 0.062 1.4E-06 54.8 6.4 232 31-288 30-274 (643)
88 TIGR00796 livcs branched-chain 94.8 0.37 8.1E-06 47.8 11.7 68 98-178 254-321 (378)
89 PF05525 Branch_AA_trans: Bran 94.4 0.41 9E-06 48.0 11.0 127 53-201 221-347 (427)
90 COG1114 BrnQ Branched-chain am 93.6 1 2.2E-05 44.4 11.5 134 41-194 208-344 (431)
91 KOG2466 Uridine permease/thiam 93.5 9.5 0.00021 38.5 20.1 266 25-309 50-332 (572)
92 COG1115 AlsT Na+/alanine sympo 93.0 11 0.00024 37.8 22.2 62 27-89 59-124 (452)
93 PF05525 Branch_AA_trans: Bran 92.7 12 0.00026 37.7 23.0 74 33-118 5-81 (427)
94 COG0733 Na+-dependent transpor 91.3 17 0.00038 36.5 22.2 106 33-146 11-118 (439)
95 PRK15433 branched-chain amino 90.7 1.9 4.1E-05 43.5 9.8 105 56-180 228-332 (439)
96 KOG2349 Na+:iodide/myo-inosito 83.5 39 0.00084 35.5 14.6 244 28-297 44-302 (585)
97 TIGR01197 nramp NRAMP (natural 83.1 53 0.0012 32.8 24.6 46 99-144 64-109 (390)
98 KOG1291 Mn2+ and Fe2+ transpor 81.9 62 0.0013 32.8 15.6 50 375-424 357-408 (503)
99 PF00209 SNF: Sodium:neurotran 67.9 1.6E+02 0.0035 30.7 26.6 30 33-62 7-37 (523)
100 PLN00151 potassium transporter 65.7 2.2E+02 0.0047 31.4 21.6 102 182-295 291-399 (852)
101 PRK15433 branched-chain amino 64.9 1.7E+02 0.0036 29.8 22.5 71 32-115 9-83 (439)
102 COG4145 PanF Na+/panthothenate 60.5 1.8E+02 0.0039 28.8 24.7 240 35-300 45-300 (473)
103 PF02705 K_trans: K+ potassium 57.6 2.5E+02 0.0053 29.4 19.1 183 61-264 35-228 (534)
104 KOG1289 Amino acid transporter 53.2 2.9E+02 0.0062 28.9 13.6 48 99-146 325-372 (550)
105 PHA02764 hypothetical protein; 52.0 2.3E+02 0.005 27.4 20.2 93 28-128 11-106 (399)
106 PRK12768 CysZ-like protein; Re 51.5 62 0.0013 29.9 7.2 27 258-289 10-36 (240)
107 PRK09928 choline transport pro 50.7 2.7E+02 0.0059 30.1 12.5 68 126-193 416-484 (679)
108 TIGR00842 bcct choline/carniti 50.7 2.9E+02 0.0064 28.2 12.6 69 125-193 362-432 (453)
109 KOG4812 Golgi-associated prote 50.2 41 0.00088 30.7 5.5 70 382-455 160-243 (262)
110 PF01235 Na_Ala_symp: Sodium:a 50.1 2.3E+02 0.0051 28.6 11.5 42 103-144 297-338 (416)
111 PRK09950 putative transporter; 47.9 2.9E+02 0.0062 28.8 12.0 69 125-193 408-478 (506)
112 PRK13183 psbN photosystem II r 46.3 28 0.00061 22.8 2.8 31 270-300 4-34 (46)
113 PLN00149 potassium transporter 44.9 4.6E+02 0.01 28.8 23.9 106 180-297 213-325 (779)
114 TIGR00909 2A0306 amino acid tr 43.7 2.6E+02 0.0055 28.1 11.1 48 99-146 264-311 (429)
115 PRK04949 putative sulfate tran 43.1 2.2E+02 0.0049 26.5 9.6 35 258-297 19-53 (251)
116 COG0814 SdaC Amino acid permea 41.2 1E+02 0.0022 31.2 7.6 180 268-457 221-408 (415)
117 PF02028 BCCT: BCCT family tra 40.5 1.8E+02 0.004 30.0 9.3 145 61-214 341-485 (485)
118 CHL00020 psbN photosystem II p 39.2 32 0.00068 22.2 2.2 28 273-300 4-31 (43)
119 PF02468 PsbN: Photosystem II 32.9 33 0.00072 22.2 1.6 28 273-300 4-31 (43)
120 PRK10745 trkD potassium transp 31.7 6.7E+02 0.014 26.8 16.2 159 42-214 21-191 (622)
121 PRK03356 L-carnitine/gamma-but 31.5 6.2E+02 0.013 26.4 12.4 67 127-193 413-480 (504)
122 PF13520 AA_permease_2: Amino 30.6 5.5E+02 0.012 25.6 11.1 46 101-146 260-305 (426)
123 TIGR00794 kup potassium uptake 27.6 8.2E+02 0.018 26.6 20.6 106 178-295 181-293 (688)
124 PF00324 AA_permease: Amino ac 24.3 4.1E+02 0.0088 27.2 8.9 47 100-146 275-321 (478)
125 KOG1287 Amino acid transporter 24.1 6.9E+02 0.015 25.8 10.0 45 100-145 274-318 (479)
126 PF05805 L6_membrane: L6 membr 23.8 1.9E+02 0.0041 25.7 5.3 65 398-462 43-117 (195)
127 PF02439 Adeno_E3_CR2: Adenovi 23.3 75 0.0016 19.9 1.9 31 401-431 5-35 (38)
128 COG1292 BetT Choline-glycine b 23.1 4.5E+02 0.0098 27.4 8.5 67 125-193 411-477 (537)
129 PLN02351 cytochromes b561 fami 23.1 5.4E+02 0.012 23.8 8.2 66 268-338 80-145 (242)
130 PLN00148 potassium transporter 21.5 1.1E+03 0.024 26.0 21.0 76 180-264 212-294 (785)
131 PLN02810 carbon-monoxide oxyge 21.2 5.9E+02 0.013 23.4 8.0 67 268-338 76-142 (231)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-59 Score=460.93 Aligned_cols=407 Identities=35% Similarity=0.627 Sum_probs=361.7
Q ss_pred CCCCccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHH
Q 012295 23 SGKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFT 102 (466)
Q Consensus 23 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~ 102 (466)
+..+++|+++++++++|.+|.++|.|+|++||++++.||+.|+++++..++++.||+.+|.+|.+.++++.| +|.++|.
T Consensus 30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~-~r~~~Y~ 108 (437)
T KOG1303|consen 30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG-KRRYRYP 108 (437)
T ss_pred CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-ccCCChH
Confidence 344668889999999999999999999999999999999999999999999999999999999999988888 8889999
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCC
Q 012295 103 QAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDF 182 (466)
Q Consensus 103 ~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l 182 (466)
|+++++||+++++++.+++.+.+++.++.|++..+|+++.+.+.++.+.. ..+.+.|+++++++++|++++||+
T Consensus 109 dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~ 182 (437)
T KOG1303|consen 109 DLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNF 182 (437)
T ss_pred HHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999998765432 233468899999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCC
Q 012295 183 HNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKS 262 (466)
Q Consensus 183 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~ 262 (466)
+.++++|..+.++.+.+..+.++..+.+.......+..... ..+.. ..++++|++.|||.+|..+||||++||+
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~---~~~~~---~~f~a~g~iaFaf~gH~v~peIq~tMk~ 256 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD---LGTIP---TVFTALGIIAFAYGGHAVLPEIQHTMKS 256 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc---CCCCc---chhhhhhheeeeecCCeeeeehHhhcCC
Confidence 99999999999999988887777766655443322111111 11111 1179999999999999999999999999
Q ss_pred CCccccchhHHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCchHHHHHHHHHHHHHHHhhccccccchHHH
Q 012295 263 PPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAF 342 (466)
Q Consensus 263 p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~ 342 (466)
| ++|+|++.+++.+++++|+.++++||++|||+++|+++.|+. .|.|+...+++++.+|++.+|+++..|+.+.
T Consensus 257 p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~ 330 (437)
T KOG1303|consen 257 P----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDV 330 (437)
T ss_pred c----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHH
Confidence 9 789999999999999999999999999999999999999996 6899999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhcchhhhhhhhHHH
Q 012295 343 VERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMY 422 (466)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~~~~~~ilP~~~~ 422 (466)
+|+....++++ +. ++.+..|.+.|..+++.++++|+.+|+|+++++++||+...++++++|+++|
T Consensus 331 ~E~~~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~y 395 (437)
T KOG1303|consen 331 VEKLIGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMY 395 (437)
T ss_pred HHHHhccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998765332 10 1233689999999999999999999999999999999999999999999999
Q ss_pred HHHhccCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 012295 423 FVQKKIGAWTRKWIVLRTF-SFICLLVTIIGLIGSIEGLISA 463 (466)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~g~~~si~~ii~~ 463 (466)
+..+|.+++..+|..++.. .++++++++....++++.++.+
T Consensus 396 l~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 396 LLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 9999999999999999988 7999999999999999988764
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.4e-55 Score=447.19 Aligned_cols=400 Identities=16% Similarity=0.183 Sum_probs=314.9
Q ss_pred ccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHH
Q 012295 29 RTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLY 108 (466)
Q Consensus 29 ~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~ 108 (466)
++++..++++|++|+++|+|+|++|++|+++||+.|++++++++.++.|+.+++.++.++ .+.++|+|+++++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-------~~~~sY~~la~~~ 130 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-------TNIRTYEGVARVL 130 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCCCHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999998654 1357999999999
Q ss_pred hCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHH
Q 012295 109 LGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL 188 (466)
Q Consensus 109 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~ 188 (466)
+||++++++++.+.+.++|.|++|+++.+|.++.+++..... +..+.. ...+..+.++..++.+|++++|++++++++
T Consensus 131 ~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~-~~~~~~-~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~ 208 (467)
T PTZ00206 131 LGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP-DFLKQK-SGNRLLTSLMWLCFMLPLVIPRHIDSLRYV 208 (467)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-chhhhc-cCcEEeeeehhhhHhhhcccccchHHHHHH
Confidence 999999999999999999999999999999999988642110 000000 012233445566778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cc-ccCC---CCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCC
Q 012295 189 SVIAAIMSFAYSFIGFGLGFAKVIENGRIKG-SI-AGVP---TANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 263 (466)
Q Consensus 189 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~-~~~~---~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p 263 (466)
|.+++.++++..+++++ +...++.+..- +. .+.+ +...++...+.+.++++++|||.||.+++++++|||+|
T Consensus 209 S~i~~~~i~~~vi~ivi---~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~ 285 (467)
T PTZ00206 209 STIAVSFMVYLVIVIVV---HSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNR 285 (467)
T ss_pred HHHHHHHHHHHHhhhhh---hhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhccc
Confidence 99999877753332222 22212111100 00 0100 00111222367899999999999999999999999998
Q ss_pred CccccchhHHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCchHHHHHHHHHHHHHHHhhccccccchHHHH
Q 012295 264 PPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFV 343 (466)
Q Consensus 264 ~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 343 (466)
++ +|+.+++..++.+++++|..+|++||+.||++++++++.|++. .++....++++++.+.++.+||++.+|+|+.+
T Consensus 286 t~--~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i 362 (467)
T PTZ00206 286 SV--GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYALLGMACRNAL 362 (467)
T ss_pred ch--hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 66 9999999999999999999999999999999999999999931 33557788899999999999999999999998
Q ss_pred HHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhcchhhhhhhhHHHH
Q 012295 344 ERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYF 423 (466)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~~~~~~ilP~~~~~ 423 (466)
++.+..+ ..+ .| .+++...+..+.+.+.++|+++|+++.+++++||++++.++|++|+++|+
T Consensus 363 ~~~~~~~--~~~---------~~-------~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l 424 (467)
T PTZ00206 363 YDVIGWD--ARK---------VA-------FWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFM 424 (467)
T ss_pred HHHhCCC--ccc---------Cc-------hhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8876332 110 01 14455566667778889999999999999999999999999999999999
Q ss_pred HH---hccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012295 424 VQ---KKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLI 461 (466)
Q Consensus 424 ~~---~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~si~~ii 461 (466)
+. .+++...++|..++.++++|++.+++|||+++++.+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 425 YSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred hcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 84 222333345566778889999999999999999876
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-55 Score=423.67 Aligned_cols=390 Identities=18% Similarity=0.275 Sum_probs=338.8
Q ss_pred cccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHH
Q 012295 28 ERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKL 107 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 107 (466)
++..|..++..|++++++|+|+|++|++|+++||+.|.+..+++++++.||++.+++|.++...+.+ ....+|.|.++.
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~-~~~~~y~~~~~~ 122 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFR-GPSLDYAETAES 122 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CccccHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999998765444333 334678887764
Q ss_pred ----------HhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhh
Q 012295 108 ----------YLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMS 177 (466)
Q Consensus 108 ----------~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~ 177 (466)
.+||++|.+++..+.+.++|.|++|+++.+++++++.+.. ..-.++.+.|+++..+..++++
T Consensus 123 a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--------~~~~~s~~~~i~~~~~~~lll~ 194 (449)
T KOG1304|consen 123 AMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--------SPGVLSVRLYILIQLPPLLLLN 194 (449)
T ss_pred HHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--------CCCCccHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999721 1114667889999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhh
Q 012295 178 QIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQ 257 (466)
Q Consensus 178 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~ 257 (466)
++||+|.|..+|.++.++++ +.+++..++..++.+. .++. ....++.+....+|+.+|||+|+..+.|++
T Consensus 195 ~Ir~Lk~Lsp~Sl~Anv~~~----~g~~ii~~y~~~~~~~---~~~~---~~~~~~~~~~lf~GtaifafEGig~VLPlE 264 (449)
T KOG1304|consen 195 LIRNLKILSPFSLFANVFIL----VGLAIIMYYLVQDLPP---TSDL---PAVTGWSGLPLFFGTAIFAFEGIGMVLPLE 264 (449)
T ss_pred HHHhhHHhhHHHHHHHHHHH----HHHHHHHHHHHhccCC---cccc---ccccchhhhHHHHHHHHHHhccceEEEehh
Confidence 99999999999999999877 4555666677665541 1222 233345577899999999999999999999
Q ss_pred cccCCCCccccchh---HHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCchHHHHHHHHHHHHHHHhhccc
Q 012295 258 DTLKSPPPENKTMK---MASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQI 334 (466)
Q Consensus 258 ~~m~~p~~~~~~~~---~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl 334 (466)
++||+| ++|+ +++..++.++.++|+.+|++||++||+++++.++.|+| + +|+.+.+++++.+.+..+||+
T Consensus 265 n~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~pL 337 (449)
T KOG1304|consen 265 NSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYPL 337 (449)
T ss_pred hcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCch
Confidence 999999 9999 99999999999999999999999999999999999999 6 899999999999999999999
Q ss_pred cccchHHHHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhcchhh
Q 012295 335 FSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLA 414 (466)
Q Consensus 335 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~~~~~ 414 (466)
+++|..+.+|+.+.+|..++ |+++....+|..+++++..+|..+|+++.+++++|+++++.+.
T Consensus 338 Q~yv~~eIi~~~i~~k~~~~-----------------~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~ 400 (449)
T KOG1304|consen 338 QFYVPIEIIEPGIRKKFSEN-----------------RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLA 400 (449)
T ss_pred hhhhhHHHHHHhHHHhcCcc-----------------hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHH
Confidence 99999999999987764321 2347889999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHhccC---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012295 415 IYFPVEMYFVQKKIG---AWTRKWIVLRTFSFICLLVTIIGLIGSIEGL 460 (466)
Q Consensus 415 ~ilP~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~g~~~si~~i 460 (466)
+++|+++++...+++ ++.++++.+..++++|++..+.|||+++.++
T Consensus 401 li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 401 LIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999987653 3456777788899999999999999998753
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=4.8e-48 Score=390.13 Aligned_cols=390 Identities=19% Similarity=0.201 Sum_probs=311.8
Q ss_pred cccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccC---CCCCcCc---cccccH
Q 012295 28 ERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRF---PDPEVGP---NRIRSF 101 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~---~~~~~g~---~~~~~y 101 (466)
.++++..+++++++++.+|.|+|+||++|+++||++|++.++++++++.||.+++.+++.+ ++++.+. +...+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 4467788999999999999999999999999999999999999999999999999986422 2222220 112478
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCC
Q 012295 102 TQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPD 181 (466)
Q Consensus 102 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~ 181 (466)
.|+++..+||+++.+..+..++.+++.|+.|.+..++.+..+.. ..+.+.|++++.++++|++++|+
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~s 189 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPS 189 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccC
Confidence 99999999999999999999999999999999988876655421 24557889999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccC
Q 012295 182 FHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 261 (466)
Q Consensus 182 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 261 (466)
+++++++|.++..+++.+...+++..+. ++.+ ++.+. ....+....+.++++++|||++|..+|++++|||
T Consensus 190 l~~l~~~S~ig~~~tl~~av~i~i~~i~---~~~~-----~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~ 260 (473)
T PLN03074 190 FHNYRIWSFLGLLMTTYTAWYMTIAALS---HGQV-----EGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW 260 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCC-----CCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHhcc
Confidence 9999999999998766433322222221 1111 11111 1123455677888999999999999999999999
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHhhhhhccccccccccc--cccccccccCchHHHHHHHHHHHHHHHhhccccccch
Q 012295 262 SPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPG--NLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPV 339 (466)
Q Consensus 262 ~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 339 (466)
+| ++++++...+...+..+|+.+|+.||+.|||++++ +.+.|+| ++. ...++++++.++.+.+||+++.|+
T Consensus 261 ~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~~-~~~~~~~~~~i~~~~sy~l~~~p~ 333 (473)
T PLN03074 261 KP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RSG-WRDAAVILMLIHQFITFGFACTPL 333 (473)
T ss_pred Ch----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cch-HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99 89999999999999999999999999999999764 5577776 333 478999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhcchhhhhhhh
Q 012295 340 FAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPV 419 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~~~~~~ilP~ 419 (466)
.+..|+.+..+ +. +....|..+|+.++++++++|+.+|+|+.+++++||++++.++|++|+
T Consensus 334 ~~~~e~~~~~~--~~-----------------k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~ 394 (473)
T PLN03074 334 YFVWEKAIGVH--DT-----------------KSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPS 394 (473)
T ss_pred HHHHHHHhccc--cc-----------------ccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99988875432 10 123678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC-------------ccchhH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 012295 420 EMYFVQKKIG-------------AWTRKW--IVLRTFSFICLLV-TIIGLIGSIEGLISAKL 465 (466)
Q Consensus 420 ~~~~~~~~~~-------------~~~~~~--~~~~~~~~~g~~~-~~~g~~~si~~ii~~~~ 465 (466)
++|++.++++ .+.++| ..+..+++++.++ .+.|+|+|+++++++..
T Consensus 395 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~ 456 (473)
T PLN03074 395 LAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQID 456 (473)
T ss_pred HHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhh
Confidence 9999865432 112222 4456666665556 47999999999999763
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.9e-52 Score=422.23 Aligned_cols=403 Identities=24% Similarity=0.332 Sum_probs=327.6
Q ss_pred ccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHH
Q 012295 29 RTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLY 108 (466)
Q Consensus 29 ~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~ 108 (466)
||+|+++++++++|+++|+|+|++|++|+++||+.|++++++++.++.||.+++.++.++.+ .+ ++..+|+|+++++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~-~~~~~y~~l~~~~ 77 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NG-TGRRSYGDLARRA 77 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cc-ccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999876532 11 3578999999999
Q ss_pred hCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHH
Q 012295 109 LGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL 188 (466)
Q Consensus 109 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~ 188 (466)
+||++++++++++.+.++|.+++|++..+|.+.++++....+ ...++..+.++..++++|++++|+++++++.
T Consensus 78 ~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~ 150 (409)
T PF01490_consen 78 FGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYL 150 (409)
T ss_pred ccccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHH
Confidence 999999999999999999999999999999999998764321 2345677888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCcccc
Q 012295 189 SVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENK 268 (466)
Q Consensus 189 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~~~ 268 (466)
|.++..+++.+..+.+. ......+.++.....++..+..+.+++++++++++|||.||+++|++++|||+|++. +
T Consensus 151 s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~-~ 225 (409)
T PF01490_consen 151 SILGLFSIFYFIVIVVI----YIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF-K 225 (409)
T ss_pred hhhhhhccceeeeeecc----eeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc-c
Confidence 99999988753211111 111111111110111111233456789999999999999999999999999998321 3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCchHHHHHHHHHHHHHHHhhccccccchHHHHHHHHh
Q 012295 269 TMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFT 348 (466)
Q Consensus 269 ~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 348 (466)
|++++...++.+++++|..+|++||++||+++++|++.|++ ++++...++++++.++++.+||++.+|.++.+++.+.
T Consensus 226 ~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~ 303 (409)
T PF01490_consen 226 KMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLF 303 (409)
T ss_pred ccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--CcccccccccccchhhhhhccccccchhHhhhhhhee
Confidence 55599999999999999999999999999999999999998 5668999999999999999999999999999999886
Q ss_pred hhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhcchhhhhhhhHHHHHHhcc
Q 012295 349 RKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKI 428 (466)
Q Consensus 349 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~~~~~~ilP~~~~~~~~~~ 428 (466)
++.+..+...+ ...+.+++|...|+++++.+.++|+.+|+++++++++|++++..++|++|+++|++.+|+
T Consensus 304 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~ 374 (409)
T PF01490_consen 304 KRAASSRDSPK---------NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKR 374 (409)
T ss_pred ccccccccccc---------cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcc
Confidence 53000000000 001223778999999999999999999999999999999999999999999999999887
Q ss_pred CccchhHHH-----HHHHHHHHHHHHHHHHHHHH
Q 012295 429 GAWTRKWIV-----LRTFSFICLLVTIIGLIGSI 457 (466)
Q Consensus 429 ~~~~~~~~~-----~~~~~~~g~~~~~~g~~~si 457 (466)
++.+.+|.. .+..+++|++..+.|+|+++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 375 KRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred cccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 665444332 34566788888888888775
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-44 Score=351.89 Aligned_cols=401 Identities=19% Similarity=0.284 Sum_probs=324.5
Q ss_pred cccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHH
Q 012295 28 ERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKL 107 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 107 (466)
+++.|...+++|+.|+++|+|++++|++|++.|.+.|++++++++.++.++.+++.++.++.. ..+|++++++
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~-------~~ty~~l~~~ 75 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG-------ERTYSSLGDL 75 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC-------CCCHHHHHHH
Confidence 345578899999999999999999999999999999999999999999999999999876532 2499999999
Q ss_pred HhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcc-eehhhHHHHHHhhcCCCCCchh
Q 012295 108 YLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTK-HMLLFGAVQVVMSQIPDFHNME 186 (466)
Q Consensus 108 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~pl~~~~~l~~l~ 186 (466)
.+|+.++....+.......| +++|++..+|.++.++......++.... ...+.. +++....++.||++.|++..++
T Consensus 76 ~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~pLsl~k~l~~Lk 152 (411)
T KOG1305|consen 76 IFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIILPLSLLKNLDSLK 152 (411)
T ss_pred HcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHHHHHHHHhhhhHH
Confidence 99999977777777777777 7999999999999887654322221111 123333 5677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCc
Q 012295 187 WLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGS-IAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPP 265 (466)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~ 265 (466)
+.|.++...++.+.++++ ++....+...+. ....+ ....+++.+.++++++|||.||+|..++++|||||++
T Consensus 153 ~tS~~s~~~~~~fv~~vv----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~ 225 (411)
T KOG1305|consen 153 YTSALSLASVVYFVVLVV----YKYFQGPCALGRLSYLVP---NLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSV 225 (411)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhcccccCCcccccC---CcchhhhhhhhhhhhheeeeccccceeeeeeeeCchH
Confidence 999999999886554333 333332210011 11111 1222368889999999999999999999999999966
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCch----HHHHHHHHHHHHHHHhhccccccchHH
Q 012295 266 ENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPY----WLIDLANACIVLHLVGGYQIFSQPVFA 341 (466)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~----~~~~~~~~~~~i~~~~s~pl~~~p~~~ 341 (466)
+|++++...+...+.++|...|.+||+.|||.+.+|++.+++..++. +.....+..+..+++.++|+..+|+|.
T Consensus 226 --~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~ 303 (411)
T KOG1305|consen 226 --KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRM 303 (411)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 99999999999999999999999999999999999999999853222 246899999999999999999999999
Q ss_pred HHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhcchhhhhhhhHH
Q 012295 342 FVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEM 421 (466)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~~~~~~ilP~~~ 421 (466)
.+++.+..+.|+.+. ....+++.++..++....+.|+++|+++.+++++||.+++.++|++|+++
T Consensus 304 ~l~~~~~~~~~~~~~---------------~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~ 368 (411)
T KOG1305|consen 304 NLDELLFPYQPGLTS---------------FSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALY 368 (411)
T ss_pred HHHHHhcccCCCCCC---------------ccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHh
Confidence 988777655444311 11156788899999999999999999999999999999999999999999
Q ss_pred HHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012295 422 YFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAK 464 (466)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~si~~ii~~~ 464 (466)
|++..|+ .+++....+...++++.++++|+..-+.++..+.
T Consensus 369 yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 369 YLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAKN 409 (411)
T ss_pred hheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998876 4444455667788899999999988888887654
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-41 Score=304.30 Aligned_cols=405 Identities=17% Similarity=0.178 Sum_probs=329.2
Q ss_pred CCccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcC--ccccccHH
Q 012295 25 KPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVG--PNRIRSFT 102 (466)
Q Consensus 25 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g--~~~~~~y~ 102 (466)
+|...+.+-+++.-|+.|++=|.=+++||++...-||+ ++..++.++-++.||+.+|++|..++.+ .| .+...+|.
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsYv 188 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSYV 188 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhHH
Confidence 45567888999999999999999999999999988888 7999999999999999999999866554 33 24556999
Q ss_pred HHHHHHhCCC-chhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCC
Q 012295 103 QAVKLYLGDK-NQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPD 181 (466)
Q Consensus 103 ~~~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~ 181 (466)
+++..+++|. |...+.+.+.+.+..+|+.|.+..+|.+..-+++. ..+.+-|+++..+.++|.+++++
T Consensus 189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----------svd~~sWm~i~~a~LLpc~FLk~ 257 (524)
T KOG4303|consen 189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----------SVDKASWMMITSASLLPCSFLKD 257 (524)
T ss_pred HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----------CccccchhhhhhHHHhhhHHHHH
Confidence 9999999887 44889999999999999999999999887755431 35667889999999999999888
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccC
Q 012295 182 FHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 261 (466)
Q Consensus 182 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 261 (466)
+|..+.+|++..+.-+..-++ +..|.....+++.-+ .+ +-.-+..++...+|+++|+|..|..+|++...|+
T Consensus 258 Lk~VS~lSf~ct~sH~viN~i---~v~YCLs~~~dW~ws--kv---~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~ 329 (524)
T KOG4303|consen 258 LKIVSRLSFFCTISHLVINLI---MVLYCLSFVSDWSWS--KV---TFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMK 329 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccce--eE---EEEEEcccCceEEEEEEEeeeceeeccccccccC
Confidence 887777777777665543333 333433332221100 00 0001111334789999999999999999999999
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCchHHHHHHHHHHHHHHHhhccccccchHH
Q 012295 262 SPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFA 341 (466)
Q Consensus 262 ~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~ 341 (466)
+| .++.-.+.-+=+..+++-..+|..||++|++.++..+.+|+|+ +. ++..+|+++++.-+.|||+-++.+.+
T Consensus 330 ~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qs--fk~~VN~fLV~KALLSYPLPfyAAve 402 (524)
T KOG4303|consen 330 NP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QS--FKILVNLFLVVKALLSYPLPFYAAVE 402 (524)
T ss_pred Ch----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cc--hhhhhhHHHHHHHHHcCCchHHHHHH
Confidence 99 8899998888888999999999999999999999999999983 23 78899999999999999999999999
Q ss_pred HHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhcchhhhhhhhHH
Q 012295 342 FVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEM 421 (466)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~~~~~~ilP~~~ 421 (466)
.+|+-+.+..|.+++.. -++. ..+.+-+.+.+|..+++.+.++|+.+|.+..+++++|++.++.++|++|+++
T Consensus 403 lLe~nlF~g~p~t~Fps-cys~------Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lF 475 (524)
T KOG4303|consen 403 LLENNLFLGYPQTPFPS-CYSP------DGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALF 475 (524)
T ss_pred HHHHhhhcCCCCCCCce-eeCC------CcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHH
Confidence 99988777667665421 1111 0111234567899999999999999999999999999999999999999999
Q ss_pred HHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012295 422 YFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAK 464 (466)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~si~~ii~~~ 464 (466)
|++.+.+...+.++.++..++++|..+++.|.|-|...+++..
T Consensus 476 Hl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~ 518 (524)
T KOG4303|consen 476 HLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAI 518 (524)
T ss_pred HHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHH
Confidence 9999887777788888888899999999999999999888764
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-32 Score=270.32 Aligned_cols=393 Identities=17% Similarity=0.191 Sum_probs=293.7
Q ss_pred ccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHH
Q 012295 27 FERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVK 106 (466)
Q Consensus 27 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 106 (466)
.+++.+..++++++.++++|+|+|++|++++..|++.+++++++.+.+++++.+++.|+..+.+. +..++.++++
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-----~~~~~~~~~~ 79 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-----GKASITSLVE 79 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CcccHHHHHH
Confidence 34455688999999999999999999999999999999999999999999999999998765432 1258999999
Q ss_pred HHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchh
Q 012295 107 LYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNME 186 (466)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~ 186 (466)
+.+||++++++++.+.+.+++.+.+|.+..+|.++++++...... ..++..+.+++..++.++++.++...++
T Consensus 80 ~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~-------~~~r~~~~lif~~~~~~l~~~~~~~~lk 152 (415)
T COG0814 80 DYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN-------PLPRKLGSLIFALVLAFLSWLGTLAVLK 152 (415)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC-------CcchHHHHHHHHHHHHHHHHhchhHHHH
Confidence 999999999999999999999999999999999999998532111 0455677788888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCcc
Q 012295 187 WLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPE 266 (466)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~ 266 (466)
..+.+....+.++.+ +..+...+.++. .....|. .....+.+...++|+++|||.||+++|++++|||++.+
T Consensus 153 ~ts~l~~~~v~~~~~----l~~~~~~~~~~~--~l~~~~~-~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~- 224 (415)
T COG0814 153 ITSLLVFGKVIYLVL----LVVYLIPHWNPA--NLFALPS-ASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK- 224 (415)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhcccCHH--HHhcccc-cchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh-
Confidence 999999988775333 333333222111 1111111 11234457789999999999999999999999998853
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCc-----------hHHHHHHHHHHHHHHHhhcccc
Q 012295 267 NKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEP-----------YWLIDLANACIVLHLVGGYQIF 335 (466)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~-----------~~~~~~~~~~~~i~~~~s~pl~ 335 (466)
++.+|+...+..+..++|..+++++|..+|+.++++++++.++.+. ++.....+++..+.+..||--.
T Consensus 225 -~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv 303 (415)
T COG0814 225 -KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGV 303 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCc
Confidence 4599999999999999999999999999999999999999974211 2244555556666666665555
Q ss_pred ccchHHHHHHHHhhhCCCCCcccCcccccCCCCCCccch--hhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhcchh
Q 012295 336 SQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVN--ILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPL 413 (466)
Q Consensus 336 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~~~~ 413 (466)
....++..++.+..+ +.+ .+ ++.+ .............+...+...+..+.+.+.+|+.....+
T Consensus 304 ~lg~~~~~~~~~~~~--~~~-~~------------r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~l 368 (415)
T COG0814 304 YLGLFEGLADLFKKS--NSK-PG------------RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPAL 368 (415)
T ss_pred hhhHHHhhhHHHHhc--cCc-cc------------chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 555666666655431 100 00 1111 222334556667777788888889999999999999999
Q ss_pred hhhhhhHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 012295 414 AIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIG 455 (466)
Q Consensus 414 ~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 455 (466)
.+..|...+.+....++.+.++.....+.++|++.+....+.
T Consensus 369 l~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~ 410 (415)
T COG0814 369 LFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLA 410 (415)
T ss_pred HHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999998888766544444433344556667776666655543
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.94 E-value=1.9e-24 Score=211.92 Aligned_cols=355 Identities=15% Similarity=0.113 Sum_probs=255.3
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
.++++++...+...+.++++|+|||++|.+.++.|..++++++++++....||+.++.|+..+.+ +..++.+++
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~------~g~~~~tma 79 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR------IGSSFDTIT 79 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999865432 236899999
Q ss_pred HHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCch
Q 012295 106 KLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 185 (466)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l 185 (466)
|+.+||+|+.+..++..+..|+.+.+|+.-.++.+.+.++.. +. ..++..-.++++++.-.+.... .+..
T Consensus 80 ~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~-------~i~~~~~~llF~~~~~~iv~~g-t~~v 149 (414)
T PRK10483 80 KDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SL-------NVPARAAGFGFALLVAFVVWLS-TKAV 149 (414)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CC-------CCcHHHHHHHHHHHHHHHHHhh-hhHH
Confidence 999999999999999999999999999999999999998641 10 1222333345555555555533 3555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCc
Q 012295 186 EWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPP 265 (466)
Q Consensus 186 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~ 265 (466)
.+++.+-....+...++.+. ....+-+.+ ...+.+ ......+...+.++|++++||+.|+++|++.+.+++..
T Consensus 150 d~~n~~l~~~~i~~f~~~~~----~l~~~i~~~-~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~- 222 (414)
T PRK10483 150 SRMTAIVLGAKVITFFLTFG----SLLGHVQPA-TLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDP- 222 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhhcCHH-HHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCH-
Confidence 55555444443322222221 121211110 011111 01111223467999999999999999999999988542
Q ss_pred cccchhHHHHHHHHHHHHHHHhh--hhhcccc---------ccccccccccccccc-cCchHHHHHHHHHHHHHHHhhcc
Q 012295 266 ENKTMKMASMISIFITTFFYLCC--GCFGYAA---------FGNDTPGNLLTGFGF-YEPYWLIDLANACIVLHLVGGYQ 333 (466)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~Y~~~--g~~gy~~---------fg~~~~~~il~~~~~-~~~~~~~~~~~~~~~i~~~~s~p 333 (466)
+|.+|++..+..+..++|+.. .+.|-.. -+++. +..++.+.. .+..+......++..+.+.+||-
T Consensus 223 --~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 223 --KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999963 3444332 12111 111122221 13346777888999999999998
Q ss_pred ccccchHHHHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccc-hHHHHHHhhhhhcch
Q 012295 334 IFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWP 412 (466)
Q Consensus 334 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~-~~~i~~~~Ga~~~~~ 412 (466)
-....++|.+.+.++.+ ++ + ..|........+++.++|.+.|+ |-..++..|.. ..+
T Consensus 300 Gv~LGL~d~l~D~~k~~--~~----~---------------~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~i 357 (414)
T PRK10483 300 GVTLGLFDYLADLFGFD--DS----A---------------MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATI 357 (414)
T ss_pred HHHHHHHHHHHHHhCCC--Cc----c---------------ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHH
Confidence 88888899988887543 11 0 22344556778999999999997 88999999977 678
Q ss_pred hhhhhhhHHHHHHhcc
Q 012295 413 LAIYFPVEMYFVQKKI 428 (466)
Q Consensus 413 ~~~ilP~~~~~~~~~~ 428 (466)
+.-++|+++.++.||+
T Consensus 358 l~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 358 WAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8889999999999875
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.94 E-value=2.6e-24 Score=210.79 Aligned_cols=356 Identities=14% Similarity=0.087 Sum_probs=250.6
Q ss_pred cccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHH
Q 012295 28 ERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKL 107 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 107 (466)
++|.+...+...+.++++|+|+|++|.+-+++|...+++++++++....||+.++.|+..+.+ +..++.+++|+
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~------~g~~l~tma~~ 79 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP------VGSSFNTITKD 79 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCHHHHHHH
Confidence 334467789999999999999999999999999999999999999999999999999875542 23789999999
Q ss_pred HhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhH
Q 012295 108 YLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 187 (466)
Q Consensus 108 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~ 187 (466)
.+||+|+.+..+...+..|+.+++|+.-.++.+++.++... +. ..+...-.++++++...+.... .+...+
T Consensus 80 ~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~-------~i~~~~~~llF~~~~~~~v~~g-t~~vd~ 150 (415)
T PRK09664 80 LIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL-GY-------HANPRIVGICTAIFVASVLWIS-SLAASR 150 (415)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cC-------CCcHHHHHHHHHHHHHHHHHhc-hhHHHH
Confidence 99999999999999999999999999999999999986411 00 1222222345555555555433 355555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcch-hHHHHHHHHHHHHHhhccccceehhhhcccCCCCcc
Q 012295 188 LSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLA-DKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPE 266 (466)
Q Consensus 188 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~ 266 (466)
.+.+-....+...++.+. ....+-+.+ .....+..... ......+.++|++.+||+.|+++|++.+.+++..
T Consensus 151 ~nr~l~~~~ii~f~~~~~----~l~~~i~~~-~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~-- 223 (415)
T PRK09664 151 ITSLFLGLKIISFVIVFG----SFFFQVDYS-ILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRK-- 223 (415)
T ss_pred HHHHHHHHHHHHHHHHHH----HHhhcccHH-HHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccH--
Confidence 544444333321111111 111111110 01111100001 1122467899999999999999999999987543
Q ss_pred ccchhHHHHHHHHHHHHHHHh--hhhhcccc---------ccccccccccccccccCchHHHHHHHHHHHHHHHhhcccc
Q 012295 267 NKTMKMASMISIFITTFFYLC--CGCFGYAA---------FGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIF 335 (466)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~Y~~--~g~~gy~~---------fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 335 (466)
+|.+|++..+..+..++|.. .++.|-.. .|++.+..+..-....+..+......++..+.+.+||--.
T Consensus 224 -~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv 302 (415)
T PRK09664 224 -DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGV 302 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999888863 34444322 2222222111111111345788899999999999999888
Q ss_pred ccchHHHHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccc-hHHHHHHhhhhhcchhh
Q 012295 336 SQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWPLA 414 (466)
Q Consensus 336 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~-~~~i~~~~Ga~~~~~~~ 414 (466)
...++|.+.+.+..+ +++ ..|.....+..+++.+.|.+.|+ |-..++..|.. .+++.
T Consensus 303 ~LGL~D~l~D~~~~~--~~~-------------------~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~ 360 (415)
T PRK09664 303 TLGLFDYLADLFKID--NSH-------------------GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWA 360 (415)
T ss_pred HHHHHHHHHHHhCCC--Ccc-------------------ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHH
Confidence 888899988887543 110 22444566778999999999997 88999999996 56888
Q ss_pred hhhhhHHHHHHhcc
Q 012295 415 IYFPVEMYFVQKKI 428 (466)
Q Consensus 415 ~ilP~~~~~~~~~~ 428 (466)
-++|+++.++.||+
T Consensus 361 ~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 361 VIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHHHHhcc
Confidence 89999999999876
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=5.2e-24 Score=211.03 Aligned_cols=352 Identities=19% Similarity=0.223 Sum_probs=252.0
Q ss_pred cccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHh
Q 012295 30 TGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYL 109 (466)
Q Consensus 30 ~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~ 109 (466)
+.+.+.+++.+.++++|+|+|++|.+.+..|.+++++++++++.+.+++++++.|...+.++ ..++.+++++.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~------~~~~~~~a~~~l 75 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE------GSSLTSMAEKYL 75 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CCCHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999998765332 478999999999
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHH
Q 012295 110 GDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLS 189 (466)
Q Consensus 110 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s 189 (466)
||+++++..+...+..++.+++|..-.++.++++++.... ...+...-.+++.++...+.... .+...+.+
T Consensus 76 G~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--------~~~~~~~~~~~f~~i~~~iv~~g-~~~v~~~n 146 (394)
T PF03222_consen 76 GKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--------TDLSPWLSSLLFTIIFGGIVYFG-TKAVDRIN 146 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 9999999999999999999999999999999999875321 11222232333433333333222 23334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCccccc
Q 012295 190 VIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKT 269 (466)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~~~~ 269 (466)
..-+...+..... +..+ ...+.+.+. .... ......+...+.++|++++||..|+++|++.+.+++.+ ||
T Consensus 147 ~~lv~~~i~~~~~---l~~~-~~p~~~~~~-L~~~--~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~---~k 216 (394)
T PF03222_consen 147 RVLVFGMIISFII---LVVY-LIPHWNPSN-LLDA--PPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP---KK 216 (394)
T ss_pred HHHHHHHHHHHHH---HHHH-HhhhcCHHH-hhcc--ccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH---HH
Confidence 4333333321111 1222 222221111 1110 11123344677999999999999999999999998543 89
Q ss_pred hhHHHHHHHHHHHHHHHhh--hhhccccc---------cccccc--cccccccccCchHHHHHHHHHHHHHHHhhccccc
Q 012295 270 MKMASMISIFITTFFYLCC--GCFGYAAF---------GNDTPG--NLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFS 336 (466)
Q Consensus 270 ~~~~~~~a~~~~~~~Y~~~--g~~gy~~f---------g~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 336 (466)
.+|++..+..+..++|++. .+.|-+.- +++..+ ..+.+.. +..+......++-.+++++||--..
T Consensus 217 ~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~ 294 (394)
T PF03222_consen 217 IRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVS--GSPWISILGSIFAFFAIATSFLGVY 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998854 33442211 111111 1222322 3466788899999999999998888
Q ss_pred cchHHHHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccc-hHHHHHHhhhhhcchhhh
Q 012295 337 QPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWPLAI 415 (466)
Q Consensus 337 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~-~~~i~~~~Ga~~~~~~~~ 415 (466)
..++|.+.+.++.+ ++ ...|........+++.++|...|+ |...+++.| ...+.+..
T Consensus 295 lgl~d~l~d~~k~~--~~-------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ 352 (394)
T PF03222_consen 295 LGLFDFLADLFKLK--NN-------------------SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLG 352 (394)
T ss_pred HHHHHHHHHHHcCC--cc-------------------ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHH
Confidence 88899888877541 11 023455566777889999999996 889999999 88899999
Q ss_pred hhhhHHHHHHhccCc
Q 012295 416 YFPVEMYFVQKKIGA 430 (466)
Q Consensus 416 ilP~~~~~~~~~~~~ 430 (466)
++|+++.++.||+++
T Consensus 353 ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 353 ILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHHHHHHcccC
Confidence 999999999876543
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.93 E-value=1.9e-23 Score=205.94 Aligned_cols=348 Identities=16% Similarity=0.172 Sum_probs=247.7
Q ss_pred cHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCC
Q 012295 32 TICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGD 111 (466)
Q Consensus 32 s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~ 111 (466)
+...+.+.+.++++|+|+|++|.+.+..|.+++++++++++.+..|+++++.|+..+.+ +..++.+++|+.+||
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~------~~~~~~~~a~~~LG~ 77 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP------ADTGLGTLAKRYLGR 77 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CCCCHHHHHHHHhCh
Confidence 57789999999999999999999999999999999999999999999999999754432 236899999999999
Q ss_pred CchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHH
Q 012295 112 KNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVI 191 (466)
Q Consensus 112 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~ 191 (466)
+|+++..+...+..|..+.+|....++.+.+.++....++ .+.....+++.++........ .+...+++.+
T Consensus 78 ~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~--------i~~~~~~l~F~~~~~~iv~~g-~~~v~~~n~~ 148 (403)
T PRK15132 78 YGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGIS--------MSPTAGVLLFTLVAGGVVCVG-TSSVDLFNRF 148 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCC--------CChHHHHHHHHHHHHHHHhcc-HHHHHHHHHH
Confidence 9999999999999999999999999999988886532111 111233334444333333322 3444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCccccchh
Q 012295 192 AAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMK 271 (466)
Q Consensus 192 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~~~~~~ 271 (466)
-+...+...+. .+. ....+.+.+. ....+ ... ...+.++|++.+||+.|+++|++.+.+++.. +|.+
T Consensus 149 L~~~~ii~~~~---~~~-~l~p~~~~~~-L~~~~--~~~---~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~---~~~~ 215 (403)
T PRK15132 149 LFSAKIIFLVV---MLA-LMMPHIHKVN-LLTLP--LQQ---GLALSAIPVIFTSFGFHGSVPSIVSYMGGNI---RKLR 215 (403)
T ss_pred HHHHHHHHHHH---HHH-HHHHhcCHHH-HhcCC--ccc---cHHHHHHHHHHHHhhCCcccHHHHHHhCcCH---HHHH
Confidence 33322221111 111 2222221111 11111 000 1367999999999999999999999987543 8999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccccc-----ccc-----cccccccc-cCchHHHHHHHHHHHHHHHhhccccccchH
Q 012295 272 MASMISIFITTFFYLCCGCFGYAAFGND-----TPG-----NLLTGFGF-YEPYWLIDLANACIVLHLVGGYQIFSQPVF 340 (466)
Q Consensus 272 ~~~~~a~~~~~~~Y~~~g~~gy~~fg~~-----~~~-----~il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 340 (466)
|++..+..+..++|+..-......-+.+ .++ ++++.+.. .+..|....+.++..+.+.+||--....++
T Consensus 216 k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~ 295 (403)
T PRK15132 216 WVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLF 295 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985544433333222 111 22333321 134578889999999999999988888889
Q ss_pred HHHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccc-hHHHHHHhhhhhcchhhhhhhh
Q 012295 341 AFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPV 419 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~-~~~i~~~~Ga~~~~~~~~ilP~ 419 (466)
|.+.+.+.++ + ++ ..|.....+..++++++|...|+ |..+.++.|.. .+.+.+++|+
T Consensus 296 d~l~d~~~~~--~----~~---------------~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~ 353 (403)
T PRK15132 296 DYLADLFQRR--N----TV---------------GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPS 353 (403)
T ss_pred HHHHHHHccC--c----cc---------------cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9888877542 1 00 22456677888999999999997 88899998875 6899999999
Q ss_pred HHHHHHhccC
Q 012295 420 EMYFVQKKIG 429 (466)
Q Consensus 420 ~~~~~~~~~~ 429 (466)
++.++.||++
T Consensus 354 ~m~~~~r~~~ 363 (403)
T PRK15132 354 LLVWQSRKQN 363 (403)
T ss_pred HHHHHHhhcC
Confidence 9999988754
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.91 E-value=3.8e-23 Score=206.43 Aligned_cols=345 Identities=15% Similarity=0.091 Sum_probs=246.9
Q ss_pred HHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCchhh
Q 012295 37 LAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKV 116 (466)
Q Consensus 37 ~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~ 116 (466)
+..++++++|+|++++|..+++.|...+.+.+++.++.+.++...+.|...+.++ ..++.+.+++.+||+++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~------~~~~~~~~~~~~G~~~g~~ 76 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG------GASFNTIAKDLLGKTGNII 76 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CCCHHHHHHHHhCHHHHHH
Confidence 3456899999999999999999999999999999999999999999998655322 3579999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 012295 117 CGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMS 196 (466)
Q Consensus 117 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~~~~~~ 196 (466)
+.+...+.++..+.+|.+..++++..+++..... ..+.....+++.+++.++.. +..+...+++.+.+...
T Consensus 77 ~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~ 147 (381)
T TIGR00837 77 AGLSLLFVLYILTYAYISGGGSILSRLIGEYFGF--------PWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGK 147 (381)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999988642110 01222333333334444444 45677888887777666
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCccccchhHHHHH
Q 012295 197 FAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMI 276 (466)
Q Consensus 197 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~~~~~~~~~~~ 276 (466)
+...++.++..+.+. + .+ ...... .......+...+++...++|.+|.+++++.+|+++++ ||.+|++..
T Consensus 148 l~~l~~~ii~~~~~~---~-~~-~~~~~~--~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~---k~i~raii~ 217 (381)
T TIGR00837 148 IIAFALVFSGLLPHV---K-GD-LLLDVA--LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNV---KKVKKSILI 217 (381)
T ss_pred HHHHHHHHHHHHhhc---c-HH-HHhcCc--cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCH---HHHHHHHHH
Confidence 543322222222111 1 10 000000 0011234677899999999999999999999998553 999999999
Q ss_pred HHHHHHHHHHhhhhhcccccccccc----------ccccccccc-cCchHHHHHHHHHHHHHHHhhccccccchHHHHHH
Q 012295 277 SIFITTFFYLCCGCFGYAAFGNDTP----------GNLLTGFGF-YEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVER 345 (466)
Q Consensus 277 a~~~~~~~Y~~~g~~gy~~fg~~~~----------~~il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 345 (466)
+..++.++|+.+........+.+.- +........ .+..|...+..++..+.+.+|+.-....+++...+
T Consensus 218 g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~ 297 (381)
T TIGR00837 218 GSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLAD 297 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999776655554433211 111111111 02346778889999999999998888888888777
Q ss_pred HHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchH-HHHHHhhhhhcchhhhhhhhHHHHH
Q 012295 346 WFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFN-QVLGVLGALNFWPLAIYFPVEMYFV 424 (466)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~-~i~~~~Ga~~~~~~~~ilP~~~~~~ 424 (466)
.+.++.+ + ..|.....+..+++.++|.+.|+.. ..++..| +....+.+++|++++++
T Consensus 298 ~~~~~~~------~---------------~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~ 355 (381)
T TIGR00837 298 LFKFDDS------K---------------KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWK 355 (381)
T ss_pred HhCCCcc------c---------------CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 6654211 0 1134556667788999999999754 8999999 77889999999999999
Q ss_pred Hhcc
Q 012295 425 QKKI 428 (466)
Q Consensus 425 ~~~~ 428 (466)
.||+
T Consensus 356 ~r~~ 359 (381)
T TIGR00837 356 ARKK 359 (381)
T ss_pred HHhc
Confidence 8775
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.91 E-value=2.2e-21 Score=190.26 Aligned_cols=361 Identities=12% Similarity=0.025 Sum_probs=246.9
Q ss_pred HHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCch
Q 012295 35 TALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQ 114 (466)
Q Consensus 35 ~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~ 114 (466)
.....+.++.+|+|+|++|-..+..|.++.++++++.+.+.+++++.+.|.....++ +..++.+++++.+||+++
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-----~~~~i~~v~~~~lG~~g~ 97 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-----PSGNITETVEEHFGKTGG 97 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CCCCHHHHHHHHcChhHH
Confidence 445889999999999999999999999999999999999999999999997544322 237899999999999999
Q ss_pred hhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHHHHH
Q 012295 115 KVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAI 194 (466)
Q Consensus 115 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~~~~ 194 (466)
.+..++..+..+..+.+|.....+.+++++.+.. +.+ ..++....+++.++........ -+..-+++..-+.
T Consensus 98 ~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql-~~~------~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~ 169 (443)
T PRK13629 98 VVITFLYFFAICPLLWIYGVTITNTFMTFWENQL-GFA------PLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVW 169 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcC------CccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHH
Confidence 9999999999999999999988888887654321 110 1222333333333333333322 2433444433333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCC-----CCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCC------
Q 012295 195 MSFAYSFIGFGLGFAKVIENGRIKGSIAGVP-----TANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP------ 263 (466)
Q Consensus 195 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p------ 263 (466)
..+. +.+..+++ .+.+.+.+. ....+ +..........+.++|++++||+.|+++|++...+|+.
T Consensus 170 ~~i~---~l~~l~~~-LiP~w~~~~-L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~ 244 (443)
T PRK13629 170 PFIA---SLVLISLS-LIPYWNSAV-IDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFG 244 (443)
T ss_pred HHHH---HHHHHHHH-HHHHcCHHH-HhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccc
Confidence 2221 22222332 333222111 11111 00011112346789999999999999999999984322
Q ss_pred -CccccchhHHHHHHHHHHHHHHHhhhhhccccccccc-----cccc--ccc----cccc-Cc-----hHHHHHHHHHHH
Q 012295 264 -PPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT-----PGNL--LTG----FGFY-EP-----YWLIDLANACIV 325 (466)
Q Consensus 264 -~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~-----~~~i--l~~----~~~~-~~-----~~~~~~~~~~~~ 325 (466)
...++|.+|++..+..+..++|+..-+.+...-+.+. +.|. +.. ++.. .. .+......++..
T Consensus 245 ~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~ 324 (443)
T PRK13629 245 RDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIAL 324 (443)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHH
Confidence 2124899999999999999999877666655554332 1222 221 2210 01 347778888888
Q ss_pred HHHHhhccccccchHHHHHHHHhh-h-CCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchHHHHH
Q 012295 326 LHLVGGYQIFSQPVFAFVERWFTR-K-YPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLG 403 (466)
Q Consensus 326 i~~~~s~pl~~~p~~~~~~~~~~~-~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~ 403 (466)
+++.+||--....++|.++.++.+ . .++.+ + .+.+..+.....++.+.++.++...|++-.+++
T Consensus 325 ~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~ 390 (443)
T PRK13629 325 VAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT--------K------VSLGKLNTISMIFIMGSTWVVAYANPNILDLIE 390 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------c------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 899999988889999999888843 1 11110 0 112245667778888999999999999999999
Q ss_pred HhhhhhcchhhhhhhhHHHHHHhc
Q 012295 404 VLGALNFWPLAIYFPVEMYFVQKK 427 (466)
Q Consensus 404 ~~Ga~~~~~~~~ilP~~~~~~~~~ 427 (466)
-.|+-....+.|++|...-.|...
T Consensus 391 ~~~gPiia~il~l~P~y~i~kvp~ 414 (443)
T PRK13629 391 AMGAPIIASLLCLLPMYAIRKAPS 414 (443)
T ss_pred HhhhHHHHHHHHHHHHHHHHccHH
Confidence 888888889999999998887754
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.86 E-value=7.6e-20 Score=180.98 Aligned_cols=360 Identities=12% Similarity=0.051 Sum_probs=248.7
Q ss_pred HHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCch
Q 012295 35 TALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQ 114 (466)
Q Consensus 35 ~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~ 114 (466)
...+.+.++++|+|+|.+|...++.||+..++..++...+.+++.+++.|.....+ ++..++.|++++.+||+++
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~-----~p~~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK-----NPCEDITEVVEEHFGKNWG 81 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHcCHHHH
Confidence 56788999999999999999999999999999999999999999999999743321 1247899999999999999
Q ss_pred hhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHHHHH
Q 012295 115 KVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAI 194 (466)
Q Consensus 115 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~~~~ 194 (466)
.+..++..+..+..+.+|....++.+..++...... + .+ .+....+..+++.........+.+.+++.+-+.
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~-~---~p----~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~ 153 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGT-A---PP----LRGLLSLALILILVAIMSFGEKLLFKIMGPLVF 153 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C---Cc----HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 999999999999999999999999998887642211 0 11 111122222222223333456666666666554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhh----cccCCCCccccch
Q 012295 195 MSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQ----DTLKSPPPENKTM 270 (466)
Q Consensus 195 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~----~~m~~p~~~~~~~ 270 (466)
..+...+. ..++- ..+.+.+. ....| .....+.+...+++...+||.+|++++++. +|.+||..+++|.
T Consensus 154 ~~ii~l~~---l~~~l-ip~~~~~~-L~~~p--~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~ 226 (397)
T TIGR00814 154 PLVLILVL---LSLYL-IPHWNGAN-LTTFP--SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKC 226 (397)
T ss_pred HHHHHHHH---HHHHH-HHHcCHHH-HhcCC--cccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHH
Confidence 43322222 22222 22211111 11111 111234577899999999999999999998 4455443335899
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccccccccc-----ccc--ccccccc-cCchHHHHHHHHHHHHHHHhhccccccchHHH
Q 012295 271 KMASMISIFITTFFYLCCGCFGYAAFGNDT-----PGN--LLTGFGF-YEPYWLIDLANACIVLHLVGGYQIFSQPVFAF 342 (466)
Q Consensus 271 ~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~-----~~~--il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~ 342 (466)
+|++..+..+..++|+..-+.+....+.+. ++| .+..+.+ .+..+...+..++-.+++.+||--+...++|.
T Consensus 227 ~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~ 306 (397)
T TIGR00814 227 LRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREG 306 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999998877666666555442 112 1221111 13346777888888889999998889999999
Q ss_pred HHHHHhhh-CCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhcchhhhhhhhHH
Q 012295 343 VERWFTRK-YPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEM 421 (466)
Q Consensus 343 ~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~~~~~~ilP~~~ 421 (466)
+.+.+.+. .++.+ + .+++..+.....++.+.++.+|...|++-.+++-.|+-....+.|++|...
T Consensus 307 l~~l~~~~~~~~~~--------~------~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~ 372 (397)
T TIGR00814 307 LNGIVLNSLKMKGK--------K------INIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYA 372 (397)
T ss_pred HHHHHHHHhccccc--------c------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99887432 11110 0 112244556677888999999999999999999888888889999999998
Q ss_pred HHHHhcc
Q 012295 422 YFVQKKI 428 (466)
Q Consensus 422 ~~~~~~~ 428 (466)
-.|...-
T Consensus 373 ~~~v~~l 379 (397)
T TIGR00814 373 IYKVPAL 379 (397)
T ss_pred HHccHHH
Confidence 8877543
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.69 E-value=5.1e-14 Score=143.32 Aligned_cols=240 Identities=10% Similarity=0.058 Sum_probs=153.5
Q ss_pred ccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHH
Q 012295 27 FERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVK 106 (466)
Q Consensus 27 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 106 (466)
++|+.+.++.+...+++++|+|++.+|..+++.|. .+++.+++.+++.......+.|.... .++.| ......+
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~-~P~~G-----G~y~y~~ 76 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMF-SRKSG-----GMGGYAE 76 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCC-----chHHHHH
Confidence 46778999999999999999999999998888886 46888888888888888888886544 34333 3455668
Q ss_pred HHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHH-HHHHhhcCCCCCch
Q 012295 107 LYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGA-VQVVMSQIPDFHNM 185 (466)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~~pl~~~~~l~~l 185 (466)
+.+||+..+++.+..++.......++.....+++..+++. .. .+ ...+.+...+ +..-..-.+..+..
T Consensus 77 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~----~~---~~----~~~~~~~~~~l~~~~~ln~~g~~~~ 145 (438)
T PRK10655 77 YAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA----TL---SP----VQICLATIGVLWLCTVANFGGARIT 145 (438)
T ss_pred HHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cc---ch----HHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999999887776665555555555555554431 00 00 0111111111 11122223344555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCc
Q 012295 186 EWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPP 265 (466)
Q Consensus 186 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~ 265 (466)
..++.+.....+...++.++..... .+.+... +... ......+.++..++....|+|.|.+.+....+|+|||+
T Consensus 146 ~~i~~i~~~~~l~~l~~~~i~~~~~-~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~- 219 (438)
T PRK10655 146 GQISSVTVWGVIIPVVGLSIIGWFW-FSPSLYV---AAWN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE- 219 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCccccc---CCcC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc-
Confidence 5555544443332222222222211 1111111 1111 11111123566788899999999999999999999996
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhhhc
Q 012295 266 ENKTMKMASMISIFITTFFYLCCGCFG 292 (466)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~Y~~~g~~g 292 (466)
|+.+|++..+..++.++|++.....
T Consensus 220 --r~iPrAi~~~~~~~~~~Y~l~~~~~ 244 (438)
T PRK10655 220 --RNVPIAVLGGTLGAAVIYIVSTNVI 244 (438)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999765443
No 17
>PRK15049 L-asparagine permease; Provisional
Probab=99.65 E-value=2e-13 Score=140.66 Aligned_cols=368 Identities=14% Similarity=0.102 Sum_probs=194.6
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAW-SMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQA 104 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~ 104 (466)
+.+|+.+.++.....+++++|+|++..|. +.++.|. .+++..++.+++....+..+.|..... |..| ...+.
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~-P~aG-----g~y~y 97 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHR-PSSG-----SFVSY 97 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-----CHHHH
Confidence 35777889999999999999999999888 5667776 468888889999999999999876543 3333 56777
Q ss_pred HHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhH-HHHHHhhcCCCCC
Q 012295 105 VKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFG-AVQVVMSQIPDFH 183 (466)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~pl~~~~~l~ 183 (466)
+++.+||+..+++.+..++........-....+.+...+ +. . + . . ..|..... +++.-+.-....|
T Consensus 98 ~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~--~--~---~---~--~~~~~~~~~~~l~~~iN~~gvk 164 (499)
T PRK15049 98 AREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GA--F--G---G---V--PQWVFALAALTIVGTMNMIGVK 164 (499)
T ss_pred HHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--C--C---C---C--cHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999888765544333333333333211 00 0 0 0 1 11221111 1112222223344
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC---CCCcc--hhHHHHHHHHHHHHHhhccccceehhhhc
Q 012295 184 NMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGV---PTANL--ADKLWLAFQALGDIAFAYPYSIILLEIQD 258 (466)
Q Consensus 184 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~faf~~h~~~~~i~~ 258 (466)
....+.....+..+...+..++..+.......+.+....+. .+... .+.+...+.++...+|+|.|-..+....+
T Consensus 165 ~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~ae 244 (499)
T PRK15049 165 WFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAG 244 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444433332222111111112222111111111000011 10011 12234556777889999999999999999
Q ss_pred ccCCCCccccchhHHHHHHHHHHHHHHHhhhhhccccccccc----cccccccccccCchHHHHHHHHHHHHHHHhhccc
Q 012295 259 TLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT----PGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQI 334 (466)
Q Consensus 259 ~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~----~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl 334 (466)
|+|||+ |+.+|++..+...+.++|+............+. .+.+..-+......+...+.++..++..+.+.--
T Consensus 245 E~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns 321 (499)
T PRK15049 245 ECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNS 321 (499)
T ss_pred HhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 999996 889999999998888888876554333332211 1111111110012234455555555555554422
Q ss_pred cccchHHHHHHHHh-hhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccc--hHHHHHHhhhhhcc
Q 012295 335 FSQPVFAFVERWFT-RKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY--FNQVLGVLGALNFW 411 (466)
Q Consensus 335 ~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~--~~~i~~~~Ga~~~~ 411 (466)
......+.+...-. +..|+ ...+.++.+.| ..-+++..++.++..++....|+ ++.++++.+ .+.
T Consensus 322 ~~~~~sR~l~a~Ardg~lP~--~f~kv~k~~~P--------~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~ 389 (499)
T PRK15049 322 GLYCTGRILRSMAMGGSAPS--FMAKMSRQHVP--------YAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGI 389 (499)
T ss_pred HHHHHHHHHHHHHhcCCcCH--HHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHH
Confidence 22222122211111 11221 11111112334 22233333333333233333332 455555544 334
Q ss_pred hhhhhhhhHHHHHHhcc
Q 012295 412 PLAIYFPVEMYFVQKKI 428 (466)
Q Consensus 412 ~~~~ilP~~~~~~~~~~ 428 (466)
.+.|++|.+.+++.||+
T Consensus 390 li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 390 IASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78899999999887653
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.65 E-value=4e-13 Score=136.97 Aligned_cols=241 Identities=11% Similarity=0.051 Sum_probs=150.3
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
+++|+.+.++.+...+++++|+|++.+|...++.|.. .+...++.++.....+..+.|..... |+.| ...+.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~-P~aG-----G~y~~~ 77 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLD-PSPG-----GSYAYA 77 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC-----ChhHHH
Confidence 4667889999999999999999999999988887743 45566666777777777788865543 3333 233447
Q ss_pred HHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHH--HHHhhcCCCCC
Q 012295 106 KLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAV--QVVMSQIPDFH 183 (466)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~--~~pl~~~~~l~ 183 (466)
++.+||...+++.+..++.......+......++...+.+.. ..+ ....++..++ ++-..-....|
T Consensus 78 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~ln~~gvk 145 (445)
T PRK10644 78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-------KDP-----LVLTITCVVVLWIFVLLNIVGPK 145 (445)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CCc-----HHHHHHHHHHHHHHHHHHHhchH
Confidence 899999999999888887665555555545555554443311 000 0111111111 11222233455
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCC
Q 012295 184 NMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 263 (466)
Q Consensus 184 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p 263 (466)
...++..+.....+...++..+..+.. .+.+... .+.+ ......+..+..++....|+|.|.+......+|+|||
T Consensus 146 ~~~~i~~i~~~~~~i~l~~~~~~~~~~-~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P 220 (445)
T PRK10644 146 MITRVQAVATVLALIPIVGIAVFGWFW-FRGETYM---AAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP 220 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcc---CCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCc
Confidence 555655555444332111111111111 1111111 1111 1111233456678889999999999999999999999
Q ss_pred CccccchhHHHHHHHHHHHHHHHhhhhhcc
Q 012295 264 PPENKTMKMASMISIFITTFFYLCCGCFGY 293 (466)
Q Consensus 264 ~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy 293 (466)
+ |+.+|++..+..++.++|.+..+...
T Consensus 221 ~---r~iPrai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 221 K---RNVPIATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred c---cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 89999999999999999998776633
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.64 E-value=3.1e-13 Score=137.31 Aligned_cols=244 Identities=11% Similarity=0.045 Sum_probs=153.4
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
+++|+.+.++.+...+++++|+|++.+|...++.|.. .+...++.++.....+..+.|..... |+.| ...+.+
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~-P~~G-----G~y~y~ 74 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKN-PQQG-----GPIAYA 74 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC-----ChhHHH
Confidence 4577889999999999999999999999999988864 57777888888888888888865543 3333 234444
Q ss_pred HHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehh-hHHHHHHhhcCCCCCc
Q 012295 106 KLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLL-FGAVQVVMSQIPDFHN 184 (466)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~pl~~~~~l~~ 184 (466)
++ +||...+++.+..+........++.+...+++..+.+.. ..+ .. .+++. ..+.+.-+...+..|.
T Consensus 75 ~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-------~~~--~~--~~~~~~~i~~~~~~ln~~gvk~ 142 (435)
T PRK10435 75 GE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-------NDP--IP--AGIACIAIVWVFTFVNMLGGTW 142 (435)
T ss_pred HH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-------CCh--HH--HHHHHHHHHHHHHHHHHHhHHH
Confidence 67 799999999888776555555556566666666554321 000 00 11111 1111122223334444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCC
Q 012295 185 MEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPP 264 (466)
Q Consensus 185 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~ 264 (466)
.+.++.+..+..+. .+++..+......++. ....+..+ .......++..++....|+|.|.+.+....+|+|||+
T Consensus 143 ~~~i~~i~~~~~li---~~~~~~i~g~~~~~~~-~~~~~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~ 217 (435)
T PRK10435 143 VSRLTTIGLVLVLI---PVVGTAIVGWHWFDAA-TYAANWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK 217 (435)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHcCHH-hhcccccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc
Confidence 55554444433322 1111111111111110 00011110 1112355788999999999999999999999999996
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhhhccccc
Q 012295 265 PENKTMKMASMISIFITTFFYLCCGCFGYAAF 296 (466)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~f 296 (466)
|+.+|++..+..++.++|+...+......
T Consensus 218 ---r~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 218 ---RTVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999998776644433
No 20
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.61 E-value=1e-12 Score=134.73 Aligned_cols=285 Identities=10% Similarity=0.043 Sum_probs=167.9
Q ss_pred ccccHHHHHHHHHhhhhchhhhhhHHHHH-hhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHH
Q 012295 29 RTGTICTALAHIITGVIGAGVLSLAWSMA-QLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKL 107 (466)
Q Consensus 29 ~~~s~~~~~~~l~~~~iG~GiL~lP~~f~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 107 (466)
|+.+.++.+...+++++|+|++.+|.... .+|....++..++.++.....+..+.|......+..| ...+.+++
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gG-----G~y~y~~~ 75 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDG-----GVYSYAKA 75 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-----ChhhhHHh
Confidence 46788899999999999999999999754 5664445666788888888888888886655332221 24455799
Q ss_pred HhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehh-hHHHHHHhhcCCCCCchh
Q 012295 108 YLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLL-FGAVQVVMSQIPDFHNME 186 (466)
Q Consensus 108 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~pl~~~~~l~~l~ 186 (466)
.+||+..+++.+..++.......++......++..+.+... .+ .....+.+. ..+..+-....+..+..+
T Consensus 76 ~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~----~~~~~~~~~~~~~~~~~~ln~~Gv~~~~ 146 (468)
T TIGR03810 76 GFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-----GG----NNPPSIIGASVLLWCVHFLVLRGVEGAA 146 (468)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----CC----CcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999998887766666666665555555443210 00 000011111 111112222335566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ccCC-CCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCC
Q 012295 187 WLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSI-AGVP-TANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPP 264 (466)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~ 264 (466)
+++.+..+..+...++.++..+... +.+...... .+.+ .....+...++..++....|+|.|.+......+|.||+
T Consensus 147 ~i~~i~~~~ki~~l~~~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~- 224 (468)
T TIGR03810 147 FINTITTIAKLVPLFVFIVIGIFAF-KGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR- 224 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc-
Confidence 6665555443322222222222211 111111000 0100 00011223345578899999999999999999999975
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhhhccccccccc----ccc-ccccccccCchHHHHHHHHHHHHHHHhhc
Q 012295 265 PENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT----PGN-LLTGFGFYEPYWLIDLANACIVLHLVGGY 332 (466)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~----~~~-il~~~~~~~~~~~~~~~~~~~~i~~~~s~ 332 (466)
|+.+|++..+..++.++|..+.+..+...+++. +++ ...-......+|...+..++.++..+.+.
T Consensus 225 ---k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~ 294 (468)
T TIGR03810 225 ---SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAW 294 (468)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776554443221 111 11111110224555666666666666654
No 21
>PRK10249 phenylalanine transporter; Provisional
Probab=99.61 E-value=6.1e-13 Score=135.90 Aligned_cols=243 Identities=14% Similarity=0.051 Sum_probs=152.9
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAWS-MAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQA 104 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~ 104 (466)
+.+|+.+.++.....+++++|+|++..|.. .+++|. ..++..++.+++....+..+.|..... +..| ...+.
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~-P~~G-----g~~~y 90 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEE-PVSG-----SFAHF 90 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-----CHHHH
Confidence 456788899999999999999999998875 556675 477888899999999999999976553 3333 56678
Q ss_pred HHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCc
Q 012295 105 VKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHN 184 (466)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~ 184 (466)
+++.+||...+++.+..++.......+.....+.+++.+.+. .....+.++. ++++-+.-.+..+.
T Consensus 91 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~-~~l~~~lN~~gv~~ 156 (458)
T PRK10249 91 AYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD-------------VPTWIWAAAF-FIIINAVNLVNVRL 156 (458)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------------CcHHHHHHHH-HHHHHHHHHhcchh
Confidence 899999999999999888777665555555555555443221 0001111111 11222223344555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccccC-CCCc-chhHHHHHHHHHHHHHhhccccceehhhhcccC
Q 012295 185 MEWLSVIAAIMSFAYSFIGFGLGFAKVIENGR-IKGSIAGV-PTAN-LADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 261 (466)
Q Consensus 185 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 261 (466)
.+.+........+...++.++..+.......+ ......+. ++.. ..+.+.++..++....|+|.|-..+....+|+|
T Consensus 157 ~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~ 236 (458)
T PRK10249 157 YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 55444333322221111222222222222111 10011110 1000 012344677899999999999999999999999
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHhhhhhc
Q 012295 262 SPPPENKTMKMASMISIFITTFFYLCCGCFG 292 (466)
Q Consensus 262 ~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~g 292 (466)
||+ |+.+|++..+...+.++|.......
T Consensus 237 ~P~---k~iPrai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 237 DPE---KSIPKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred CHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 8999999999999999998654443
No 22
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.60 E-value=1e-12 Score=134.85 Aligned_cols=245 Identities=15% Similarity=0.079 Sum_probs=148.5
Q ss_pred CCccccccHHHHHHHHHhhhhchhhhhhHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHH
Q 012295 25 KPFERTGTICTALAHIITGVIGAGVLSLAWS-MAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQ 103 (466)
Q Consensus 25 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~ 103 (466)
++.+|+.+.++.....+++++|+|++..|.. .+..|-...++..++.+++.......+.|..... |+.| .+..
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~-P~aG-----G~y~ 83 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAM-PETG-----AFHV 83 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----CHHH
Confidence 3467888999999999999999999988876 5677754457778888888888888888866543 3333 4667
Q ss_pred HHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCC
Q 012295 104 AVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFH 183 (466)
Q Consensus 104 ~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~ 183 (466)
.+++.+||...+++.+..++.....+.+.....+..+..+.+. .....+.++..++ +-+...+..|
T Consensus 84 y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~~~~~~-~~~in~~gvk 149 (471)
T PRK11387 84 YAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ-------------VPVWPWCLLFCAL-IFGLNVVSTR 149 (471)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------------CcHHHHHHHHHHH-HHHHHHHhHH
Confidence 7889999999999988888776655544444443333222110 0001111222222 2222223344
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cccccccCCCC-cchhHHHHHHHHHHHHHhhccccceehhhh
Q 012295 184 NMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGR-----IKGSIAGVPTA-NLADKLWLAFQALGDIAFAYPYSIILLEIQ 257 (466)
Q Consensus 184 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~h~~~~~i~ 257 (466)
..+..+.......+...++.++..+.......+ .........+. ...+...++..++....|+|.|-..+....
T Consensus 150 ~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a 229 (471)
T PRK11387 150 FFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAA 229 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 444443332222221111111122221111110 00000111100 001223466788888999999999999999
Q ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHhhhhhc
Q 012295 258 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFG 292 (466)
Q Consensus 258 ~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~g 292 (466)
+|+|||+ |+++|++..+..++.++|+...+..
T Consensus 230 ~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 230 GETENPA---KVIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 8999999999999999998776543
No 23
>PRK10746 putative transport protein YifK; Provisional
Probab=99.60 E-value=1.5e-12 Score=132.93 Aligned_cols=369 Identities=11% Similarity=0.065 Sum_probs=199.9
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAW-SMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQA 104 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~ 104 (466)
+.+|+.+.++.....++++||+|++..|. +.+.+|. ..++..++.+++.......+.|..... |..| .+.+.
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~-P~sG-----g~~~y 79 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLE-PVTG-----SFAVY 79 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-----CHHHH
Confidence 45777889999999999999999999877 4667787 456778888888888888899865443 3333 57788
Q ss_pred HHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCc
Q 012295 105 VKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHN 184 (466)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~ 184 (466)
+++.+||+.++++.+..++.......+.....+.+++.+.+. .....+..+... ++.+.-.+..+.
T Consensus 80 ~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-------------~~~~~~~~~~~~-~~~~lN~~gv~~ 145 (461)
T PRK10746 80 AHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-------------MAQWIPALIAVA-LVALANLAAVRL 145 (461)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------------CchHHHHHHHHH-HHHHHHHHhHHH
Confidence 899999999999999998887777666666666666554321 001111122211 122122223343
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cc--cccccccCCCCc--chhHHHHHHHHHHHHHhhccccceehhhhcc
Q 012295 185 MEWLSVIAAIMSFAYSFIGFGLGFAKVIEN-GR--IKGSIAGVPTAN--LADKLWLAFQALGDIAFAYPYSIILLEIQDT 259 (466)
Q Consensus 185 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~ 259 (466)
.+.+........+...++.++..+...... .+ ......+..+.. ..+++.++..++....|+|.|.+.+....+|
T Consensus 146 ~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E 225 (461)
T PRK10746 146 YGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGE 225 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 333322222211111111111111111111 11 000111111110 1123456779999999999999999999999
Q ss_pred cCCCCccccchhHHHHHHHHHHHHHHHhhhhhcccccccccc----ccccccccccCchHHHHHHHHHHHHHHHhhcccc
Q 012295 260 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTP----GNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIF 335 (466)
Q Consensus 260 m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 335 (466)
+|||+ |+++|++..+...+.++|+............+.. +++...+..........+.++...+..+.+.--.
T Consensus 226 ~knP~---k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~ 302 (461)
T PRK10746 226 AKNPQ---VTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSG 302 (461)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99996 8999999988888888888654443333322211 1111111100112233445555555555544222
Q ss_pred ccchHHHHHHHHh-hhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhc--ch
Q 012295 336 SQPVFAFVERWFT-RKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNF--WP 412 (466)
Q Consensus 336 ~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~--~~ 412 (466)
....-+.+...-. +..|+. ..+..+.+.| ..-+.+..+..++...+....|+-+.+++...+++. ..
T Consensus 303 ~~~~sR~l~~~a~~g~lP~~--~~~~~~~g~P--------~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~ 372 (461)
T PRK10746 303 MYSCGRMLYALAKNRQLPAA--MAKVSRHGVP--------VAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGM 372 (461)
T ss_pred HHHHHHHHHHHHhCCCcCHH--HHHhCCCCCc--------HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 2221122221111 111211 1111112333 222333333233333344445655555554443322 36
Q ss_pred hhhhhhhHHHHHHhcc
Q 012295 413 LAIYFPVEMYFVQKKI 428 (466)
Q Consensus 413 ~~~ilP~~~~~~~~~~ 428 (466)
+.++++++.+++.+|+
T Consensus 373 i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 373 VPWFVILISQLRFRRA 388 (461)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7888888888888764
No 24
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.60 E-value=2.3e-13 Score=132.06 Aligned_cols=365 Identities=16% Similarity=0.144 Sum_probs=238.2
Q ss_pred CCCccccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHH
Q 012295 24 GKPFERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFT 102 (466)
Q Consensus 24 ~~~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~ 102 (466)
+.+-+|..+.++--+.-+.+.||+| .++-..+.+.+|... ++...+.|++.+.-++.|.|...+ ++. ..++.
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSv-lLaY~I~G~~~f~iMRaLGEm~~~-~p~-----~gSF~ 80 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSV-LLAYLIAGIFVFLIMRALGEMLVA-NPV-----SGSFS 80 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHH-HHHHHHHHHHHHHHHHHHHHHHHh-CCC-----CCcHH
Confidence 3345677788899999999999999 566788899999875 777899999999999999996554 333 35999
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHH--HHHhhcCC
Q 012295 103 QAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAV--QVVMSQIP 180 (466)
Q Consensus 103 ~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~--~~pl~~~~ 180 (466)
+.+++.+|++.+.+..+..+......+++-+...+.+++.++++.. .| .+.++...+ .+=|.-.|
T Consensus 81 ~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP----------~W---v~al~~~~l~~~~NL~sVk 147 (462)
T COG1113 81 DYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVP----------QW---VFALAAVVLLLAVNLISVK 147 (462)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HH---HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986420 11 122222222 22344677
Q ss_pred CCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcc-----hhHHHHHHHHHHHHHhhccccceeh
Q 012295 181 DFHNME-WLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANL-----ADKLWLAFQALGDIAFAYPYSIILL 254 (466)
Q Consensus 181 ~l~~l~-~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~faf~~h~~~~ 254 (466)
.+.++. |++.+-+..++.+.++.....+ ....++. ...++++.+. ++++.+++.++.+.+|||.+.+.+-
T Consensus 148 ~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~-~g~~~~~---~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvG 223 (462)
T COG1113 148 VFGELEFWFALIKVAAIIAFIVVGIVLLF-GGFGGGG---GAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVG 223 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCC---CCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHH
Confidence 778888 5677777777755444433222 2222221 1233333333 2456688999999999999999999
Q ss_pred hhhcccCCCCccccchhHHHHHHHHHHHHHHH-----hhhhhccccccccccccccccccccCchHHHHHHHHHHHHHHH
Q 012295 255 EIQDTLKSPPPENKTMKMASMISIFITTFFYL-----CCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLV 329 (466)
Q Consensus 255 ~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~-----~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~ 329 (466)
-..+|-|||+ |..+|++..-..-..++|+ ++.+..+-.++++.++.+ .-+...+-.+...+.|+......+
T Consensus 224 itA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV-~~f~~iGi~~Aa~i~N~VVLtAa~ 299 (462)
T COG1113 224 ITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV-TVFSLIGIPFAAGIMNFVVLTAAL 299 (462)
T ss_pred HHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH-HHHHHcCCcccccceeEEEeechh
Confidence 9999999996 7788887766555555555 566667766666544432 222211223445566665555555
Q ss_pred hhccccccchHHHHHHHHhh-hCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccc--hHHHHHHhh
Q 012295 330 GGYQIFSQPVFAFVERWFTR-KYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY--FNQVLGVLG 406 (466)
Q Consensus 330 ~s~pl~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~--~~~i~~~~G 406 (466)
++.---.+..-..+.++-.+ +-|+. ..+....++| ..-+++..+...+..++....|. |+.+.+..+
T Consensus 300 S~~NSglystsRmL~~la~~g~APk~--~~klsk~gVP--------~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~ 369 (462)
T COG1113 300 SALNSGLYSTSRMLYSLAKQGDAPKA--FAKLSKRGVP--------VNAILLSAVVLLLGVVLNYILPEKVFELVTSSSG 369 (462)
T ss_pred hcccccccccchHHHHHhhcCcccHh--HhhccccCCC--------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 55432222222333333211 11221 1111122344 55677778888888889999993 555555555
Q ss_pred hhhcchhhhhhhhHHHHHHhcc
Q 012295 407 ALNFWPLAIYFPVEMYFVQKKI 428 (466)
Q Consensus 407 a~~~~~~~~ilP~~~~~~~~~~ 428 (466)
... ...+.+=.+.+++.||.
T Consensus 370 ~~~--l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 370 LGL--LFVWLMILLSQLKLRKA 389 (462)
T ss_pred HHH--HHHHHHHHHHHHHHHhc
Confidence 444 33444445667777763
No 25
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.59 E-value=3e-12 Score=131.54 Aligned_cols=249 Identities=10% Similarity=0.021 Sum_probs=157.2
Q ss_pred ccccccHHHHHHHHHhhhhchhhhhhHHHHHhhCh-hhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 27 FERTGTICTALAHIITGVIGAGVLSLAWSMAQLGW-IAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 27 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~-~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
++|+.+.++++...+++++|+|++.+|....+.|- ...++..++.++.....+..+.|.....+.+.| ...+..
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG-----G~y~y~ 79 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG-----GIYAYA 79 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-----ChhhhH
Confidence 36678999999999999999999999998776553 334566777788888888888887655433133 244466
Q ss_pred HHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhH-HHHHHhhcCCCCCc
Q 012295 106 KLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFG-AVQVVMSQIPDFHN 184 (466)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~pl~~~~~l~~ 184 (466)
++.+||+..+++.+..++.......++.....+++..+.+... .+.. . ..+..... ++..-..-.+..+.
T Consensus 80 ~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-----~~~~--~--~~~~~~~~~~~~~~~ln~~Gi~~ 150 (473)
T TIGR00905 80 REGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-----SGNP--V--PSILGASVLLWVFTFLVLRGVRQ 150 (473)
T ss_pred HhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----CCCc--H--HHHHHHHHHHHHHHHHHHhCHHH
Confidence 9999999999999988877666666666666666666654210 0000 0 11111111 11122234455666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCC
Q 012295 185 MEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPP 264 (466)
Q Consensus 185 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~ 264 (466)
.++++.+.....+...++.++..+.. .+.++...+..+...+.....+..+..++....|+|.|.+......+|+|| +
T Consensus 151 ~~~i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~ 228 (473)
T TIGR00905 151 AAFINTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c
Confidence 66666666554443222222222221 121111101100000011123345678889999999999999999999999 4
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhhhccc
Q 012295 265 PENKTMKMASMISIFITTFFYLCCGCFGYA 294 (466)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~ 294 (466)
|+.+|++..+..++.++|++.......
T Consensus 229 ---r~iPrai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 229 ---SDVGKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999977665433
No 26
>TIGR00909 2A0306 amino acid transporter.
Probab=99.58 E-value=1.5e-12 Score=132.32 Aligned_cols=283 Identities=12% Similarity=-0.006 Sum_probs=175.9
Q ss_pred cccccHHHHHHHHHhhhhchhhhhhHHHHH-hhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHH
Q 012295 28 ERTGTICTALAHIITGVIGAGVLSLAWSMA-QLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVK 106 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 106 (466)
+|+.+.++.+...+++++|+|++.+|.... ..|. ..++..++.+++....+..+.|..++.+ +.| ...+..+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p-~~G-----g~y~~~~ 74 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLP-VAG-----SPYTYAY 74 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC-----cceeeHH
Confidence 567889999999999999999999997655 4454 4566677778888888888888765433 333 2345557
Q ss_pred HHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCccc---CCcce--ehhhHHHHHHhhcCCC
Q 012295 107 LYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAY---GDTKH--MLLFGAVQVVMSQIPD 181 (466)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~--~~i~~i~~~pl~~~~~ 181 (466)
+.+||+.+++..+..++.....+..+....++++..+.+....+.+ ..+.. ....+ ..+..+++.-+...+.
T Consensus 75 ~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g 151 (429)
T TIGR00909 75 EAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLP---AVLTAKPGNGGVFNLPALLIVLFLTYILYLG 151 (429)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCc---hhhhcCCcccccccHHHHHHHHHHHHHHHhC
Confidence 8899999999999998888888888888888888887753100000 00000 00111 1122222223334455
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccC
Q 012295 182 FHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 261 (466)
Q Consensus 182 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 261 (466)
.+..++++.+.....+...++.++....+. +.+ ..... .+ ....++..++...+|+|.|.+.+....+|+|
T Consensus 152 ~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~-~~~----~~~~~---~~-~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~ 222 (429)
T TIGR00909 152 AKESGKVNDILVVLKVAALLLFAALGAIHF-ASN----NYTPF---MP-MGFGGVGAATALVFFAFIGFEAISTAAEEVK 222 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhHHHhhC-cHH----hcCCC---CC-CcHHHHHHHHHHHHHHHhhHHHHHhhHHhcc
Confidence 677777777766555533322222222211 111 11111 11 1234667889999999999999999999999
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHhhhhhcccccccc--ccc-cccc-cccccCchHHHHHHHHHHHHHHHhhc
Q 012295 262 SPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGND--TPG-NLLT-GFGFYEPYWLIDLANACIVLHLVGGY 332 (466)
Q Consensus 262 ~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~--~~~-~il~-~~~~~~~~~~~~~~~~~~~i~~~~s~ 332 (466)
||+ |+.+|++..+..++.++|+..........+.+ .++ ..+. -......++...+..+...+....+.
T Consensus 223 ~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (429)
T TIGR00909 223 NPE---RDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVM 294 (429)
T ss_pred Ccc---ccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 995 88999999999999999998765544332211 111 1100 00001234555566666666666665
No 27
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.58 E-value=3.1e-12 Score=130.74 Aligned_cols=243 Identities=13% Similarity=0.048 Sum_probs=157.8
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAW-SMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQA 104 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~ 104 (466)
+.+|+.+.++.....+++++|+|++..|. +.+..|. .+++..++.+++....+..+.|.....+. .| ...+.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~G-----g~~~~ 81 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPD-TG-----SFSTY 81 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC-----CHHHH
Confidence 45778899999999999999999999995 5777886 47888889999999999999987654333 23 46778
Q ss_pred HHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHH-HHHHhhcCCCCC
Q 012295 105 VKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGA-VQVVMSQIPDFH 183 (466)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~~pl~~~~~l~ 183 (466)
+++.+||+..+++.+..++.....+.+.....+.++..+.+. . ..|.....+ ++.-+.-....+
T Consensus 82 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~~~~~~~~~~~~n~~gv~ 146 (452)
T TIGR01773 82 ADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------I--PLWLFSLILTIVLTLTNLYSVK 146 (452)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C--cHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999988887777777767777666654321 0 112211111 112222233455
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cc-ccccCCCCcc--hhHHHHHHHHHHHHHhhccccceehhhhcc
Q 012295 184 NMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRI-KG-SIAGVPTANL--ADKLWLAFQALGDIAFAYPYSIILLEIQDT 259 (466)
Q Consensus 184 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~h~~~~~i~~~ 259 (466)
..+.+.....+..+...++.++..+.......+. +. ...+..+... .+.+.++..++....|+|.|.+.+....+|
T Consensus 147 ~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E 226 (452)
T TIGR01773 147 SYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAE 226 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHh
Confidence 5555554444333322212222222212211111 10 0111111011 123346789999999999999999999999
Q ss_pred cCCCCccccchhHHHHHHHHHHHHHHHhhhhhcc
Q 012295 260 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGY 293 (466)
Q Consensus 260 m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy 293 (466)
+|||+ |+.+|++..+.....++|+.......
T Consensus 227 ~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 227 SSNPI---KSITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 99996 89999998888888888887655433
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.58 E-value=2.5e-12 Score=131.94 Aligned_cols=244 Identities=14% Similarity=0.044 Sum_probs=151.6
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAW-SMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQA 104 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~ 104 (466)
+.+|+.+.++.....+++++|+|++-.|. +++++|. ..+...++.+++.......+.|.... .+. ...+.+.
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~-~~~-----~~~~~~y 89 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS-NLE-----YKSFSDF 89 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-----CCcHHHH
Confidence 46888899999999999999999999877 6778887 45667778888887788778876432 121 2246678
Q ss_pred HHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCc
Q 012295 105 VKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHN 184 (466)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~ 184 (466)
+++.+||...+++.+..++.......+.....+.++..+.+. .....+.++ .++++.+.-....+.
T Consensus 90 a~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------------~~~~~~~~~-~~~~~~~iN~~g~~~ 155 (469)
T PRK11049 90 ASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------------LSDWVASLA-VVLLLLSLNLATVKM 155 (469)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHH-HHHHHHHHHHHhHHH
Confidence 999999999999999998877655555555555555443321 000111111 111122222234455
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccc---cccCCCCcc--hhHHHHHHHHHHHHHhhccccceehhhhc
Q 012295 185 MEWLSVIAAIMSFAYSFIGFGLGFAKVIEN-GRIKGS---IAGVPTANL--ADKLWLAFQALGDIAFAYPYSIILLEIQD 258 (466)
Q Consensus 185 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~faf~~h~~~~~i~~ 258 (466)
.+.++.+.....+...++.++..+...... +..++. ..+..+... ...+.+++.++....|+|.|...+....+
T Consensus 156 ~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~ 235 (469)
T PRK11049 156 FGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAA 235 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 555555544433322222222222211111 001110 111101011 12344678999999999999999999999
Q ss_pred ccCCCCccccchhHHHHHHHHHHHHHHHhhhhhcc
Q 012295 259 TLKSPPPENKTMKMASMISIFITTFFYLCCGCFGY 293 (466)
Q Consensus 259 ~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy 293 (466)
|+|||+ |+++|++..+...+.++|........
T Consensus 236 E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 236 ETKDPE---KSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 999996 88999998777777888886655543
No 29
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.58 E-value=3.9e-12 Score=130.15 Aligned_cols=243 Identities=14% Similarity=0.069 Sum_probs=149.7
Q ss_pred CCccccccHHHHHHHHHhhhhchhhhhhHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHH
Q 012295 25 KPFERTGTICTALAHIITGVIGAGVLSLAWS-MAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQ 103 (466)
Q Consensus 25 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~ 103 (466)
++.+|+.+.++.....+++++|+|++.+|.. .+.+|. ..++..++.+++....+..+.|..... +..| ...+
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~-P~~G-----g~y~ 77 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHN-PAAS-----SFSR 77 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----CHHH
Confidence 3467778999999999999999999999886 556676 468888899999999999999976543 3333 3555
Q ss_pred HHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCC
Q 012295 104 AVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFH 183 (466)
Q Consensus 104 ~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~ 183 (466)
.+++.+||...+++.+..++.....+.......+.++..+.+. .....+.+.. +++.-....+..+
T Consensus 78 y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~l~~~ln~~gv~ 143 (457)
T PRK10580 78 YAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT-------------VPHWIWVLSV-VLIICAVNLMSVK 143 (457)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CChHHHHHHH-HHHHHHHHHccch
Confidence 6799999999999999887766555555445555554443221 0111222222 2222223334455
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhc-ccccccccCCCCcc-hhHHHHHHHHHHHHHhhccccceehhhhc
Q 012295 184 NMEWLSVIAAIMSFAYSFIGFGLGFAKVI---ENG-RIKGSIAGVPTANL-ADKLWLAFQALGDIAFAYPYSIILLEIQD 258 (466)
Q Consensus 184 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~---~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~h~~~~~i~~ 258 (466)
....+........+...++.++..+.-.. .+. +........++... .+.+.+.+.++....|+|.|.+......+
T Consensus 144 ~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~ 223 (457)
T PRK10580 144 VFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAG 223 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 55555544333322211111111111111 111 10000000110001 12234677899999999999999999999
Q ss_pred ccCCCCccccchhHHHHHHHHHHHHHHHhhhhh
Q 012295 259 TLKSPPPENKTMKMASMISIFITTFFYLCCGCF 291 (466)
Q Consensus 259 ~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~ 291 (466)
|+|||+ |+.+|++..+...+.++|......
T Consensus 224 E~knP~---k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 224 EAKDPE---KSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999996 889999998887778888766443
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.57 E-value=2e-12 Score=132.01 Aligned_cols=239 Identities=12% Similarity=0.054 Sum_probs=150.9
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAWS-MAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQA 104 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~ 104 (466)
+.+|+.+.++.....+++++|+|++..|.. .++.|. ..++..++.++.....+..+.|..... |..| .+.+.
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~-P~aG-----g~y~~ 81 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEE-PVAG-----SFSHF 81 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-----CHHHH
Confidence 467888999999999999999999998886 556665 567778888888888888888865543 3333 56667
Q ss_pred HHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCc
Q 012295 105 VKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHN 184 (466)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~ 184 (466)
+++.+||...+++.+..++.....+.+.....+++++.+.+. .....+.++...+ .-..-....|.
T Consensus 82 ~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~~~~-~~~lN~~gv~~ 147 (456)
T PRK10238 82 AYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVFFVV-INAINLTNVKV 147 (456)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHHHH-HHHHHHHhHHH
Confidence 788999999999999999888888877777777776554321 0001111111111 11112223444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccccCCCCc--chhHHHHHHHHHHHHHhhccccceehhhhcccC
Q 012295 185 MEWLSVIAAIMSFAYSFIGFGLGFAKVIENGR-IKGSIAGVPTAN--LADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 261 (466)
Q Consensus 185 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 261 (466)
.+.++.......+...++.++..+.....+.+ ......+..+.. ..+.+.++..+++...|+|.|-+.+....+|+|
T Consensus 148 ~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~k 227 (456)
T PRK10238 148 FGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEAD 227 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 44444444333332221222112222222111 110111100000 112234566788889999999999999999999
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHhh
Q 012295 262 SPPPENKTMKMASMISIFITTFFYLCC 288 (466)
Q Consensus 262 ~p~~~~~~~~~~~~~a~~~~~~~Y~~~ 288 (466)
||+ |+.+|++..+.....+.|+..
T Consensus 228 nP~---r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 228 NPE---QSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred Chh---hHHHHHHHHHHHHHHHHHHHH
Confidence 996 899999988887777777654
No 31
>PRK11021 putative transporter; Provisional
Probab=99.57 E-value=8.1e-12 Score=126.04 Aligned_cols=229 Identities=13% Similarity=0.118 Sum_probs=143.6
Q ss_pred cHHHHHHHHHhhhhchhhhhhHHHH-HhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhC
Q 012295 32 TICTALAHIITGVIGAGVLSLAWSM-AQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLG 110 (466)
Q Consensus 32 s~~~~~~~l~~~~iG~GiL~lP~~f-~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G 110 (466)
++++++...+++++|+|++.+|... +.+|- ..++..++.++.....+..+.|.....+. .| .....+++.+|
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aG-----G~y~y~~~~~G 74 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPH-AG-----GPAHFVGMAFG 74 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC-----CHHHhHHHHhC
Confidence 5788999999999999999999864 45664 56888888999999999999997665433 33 35567788999
Q ss_pred CCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHH
Q 012295 111 DKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSV 190 (466)
Q Consensus 111 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~ 190 (466)
|+..++..+..+........+.......++..+++. + . .. .....+..++.+-+...+..|..++++.
T Consensus 75 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~---~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~~ 142 (410)
T PRK11021 75 PRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW-----S---S---WQ-LLLAELLTLALLWLLNLRGASSSANLQT 142 (410)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-----C---C---ch-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999988877644333333333344444433321 0 0 00 1111111122222333344555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCccccch
Q 012295 191 IAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTM 270 (466)
Q Consensus 191 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~~~~~ 270 (466)
+..+..+ ..++... ...+.+. ... ..++.. ..++.++..++....|+|.|.+.+....+|+|||+ |++
T Consensus 143 ~~~~~~~----~i~~~~~--~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~i 210 (410)
T PRK11021 143 VIALLIV----ALVVAIW--WAGDIKP-ADI-PFPAPG-SIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDF 210 (410)
T ss_pred HHHHHHH----HHHHHHH--HHcCCch-hcC-CCCCCC-CccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccc
Confidence 4332221 1111111 1111111 011 111111 12345677899999999999999999999999996 899
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 012295 271 KMASMISIFITTFFYLCCGCF 291 (466)
Q Consensus 271 ~~~~~~a~~~~~~~Y~~~g~~ 291 (466)
+|++..+..++.++|.+....
T Consensus 211 PrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 211 PRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 32
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.56 E-value=7e-12 Score=129.16 Aligned_cols=242 Identities=11% Similarity=0.038 Sum_probs=155.6
Q ss_pred cccccHHHHHHHHHhhhhchhhhhhHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHH
Q 012295 28 ERTGTICTALAHIITGVIGAGVLSLAW-SMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVK 106 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 106 (466)
+|+.+.++.....+++++|+|++..|. +.++.|....++..++.+++.......+.|......... ..|.+.++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~g-----G~~~~~~~ 75 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVS-----GSFATYAS 75 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CCHHHHHH
Confidence 366788899999999999999998765 566777544466788888888888888888765433222 36788889
Q ss_pred HHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchh
Q 012295 107 LYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNME 186 (466)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~ 186 (466)
+.+||...+++.+..++.....+.+.....+.++..+.+. .....|..+.. ++.-+.-.+..+..+
T Consensus 76 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-~~~~~in~~gv~~~~ 141 (478)
T TIGR00913 76 RFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK-------------VNPAVWIAIFY-VFIVIINLFGVKGYG 141 (478)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------------CCHHHHHHHHH-HHHHHHHHhcchHHH
Confidence 9999999999999998888777777777666665533210 11112222221 222223344556655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--cc------ccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhc
Q 012295 187 WLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKG--SI------AGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQD 258 (466)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~ 258 (466)
+++.+.....+...+..++..+.....+.+... .. .+.++......+.++..++....|+|.|.+......+
T Consensus 142 ~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~ 221 (478)
T TIGR00913 142 EAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAG 221 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 555544433222121222222222222111100 00 0111000011245677899999999999999999999
Q ss_pred ccCCCCccccchhHHHHHHHHHHHHHHHhhhhh
Q 012295 259 TLKSPPPENKTMKMASMISIFITTFFYLCCGCF 291 (466)
Q Consensus 259 ~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~ 291 (466)
|+|||+ |+.+|++..+..++.++|....+.
T Consensus 222 E~knP~---r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 222 EAANPR---KSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999996 899999999999999999986544
No 33
>PRK10836 lysine transporter; Provisional
Probab=99.54 E-value=1.3e-11 Score=127.35 Aligned_cols=244 Identities=11% Similarity=0.038 Sum_probs=141.8
Q ss_pred CCCccccccHHHHHHHHHhhhhchhhhhhHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHH
Q 012295 24 GKPFERTGTICTALAHIITGVIGAGVLSLAW-SMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFT 102 (466)
Q Consensus 24 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~ 102 (466)
+++.+|+.+.++.....+++++|+|++..|. +.++.|....++..++.+++....+..+.|..... |+.| ...
T Consensus 10 ~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~-P~sG-----g~y 83 (489)
T PRK10836 10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYM-PVSG-----SFA 83 (489)
T ss_pred cccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC-----CHH
Confidence 3456788899999999999999999999997 56677865568888999999999999999976554 3333 456
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhh-HHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCC
Q 012295 103 QAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANC-LRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPD 181 (466)
Q Consensus 103 ~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~ 181 (466)
+.+++.+|+..++++.+..++..... .+........ +..+.+ + .....+.. ..++++-+.-...
T Consensus 84 ~y~~~~~g~~~gf~~Gw~~~~~~~~~-~a~~~~a~~~~~~~~~~-------~------~~~~~~~~-~~~~~~~~lN~~g 148 (489)
T PRK10836 84 TYGQNYVEEGFGFALGWNYWYNWAVT-IAVDLVAAQLVMSWWFP-------D------TPGWIWSA-LFLGVIFLLNYIS 148 (489)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCC-------C------CchHHHHH-HHHHHHHHHHHHc
Confidence 67788899998888888776643332 2222222221 111110 0 00011111 1111122222223
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcccccccccCCC-Ccc-hhHHHHHHHHHHHHHhhccccceehhh
Q 012295 182 FHNMEWLSVIAAIMSFAYSFIGFGLGFAKVI---ENGRIKGSIAGVPT-ANL-ADKLWLAFQALGDIAFAYPYSIILLEI 256 (466)
Q Consensus 182 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~faf~~h~~~~~i 256 (466)
.+..+..........+...+..++..+.... ++++. ....+..+ ..+ .+.+...+.+.....|+|.|...+...
T Consensus 149 v~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~ 227 (489)
T PRK10836 149 VRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEP-AGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIA 227 (489)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3333333222221111111111111111111 11110 00011110 001 122345556666678999999999999
Q ss_pred hcccCCCCccccchhHHHHHHHHHHHHHHHhhhhhc
Q 012295 257 QDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFG 292 (466)
Q Consensus 257 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~g 292 (466)
.+|+|||+ |+.+|++..+...+.++|+.....-
T Consensus 228 a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~ 260 (489)
T PRK10836 228 AGESEDPA---KNIPRAVRQVFWRILLFYVFAILII 260 (489)
T ss_pred HHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999996 8999999999999999999775443
No 34
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.53 E-value=7.9e-12 Score=130.21 Aligned_cols=295 Identities=10% Similarity=0.039 Sum_probs=177.7
Q ss_pred CCccccccHHHHHHHHHhhhhchhhhhhHHHH--HhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHH
Q 012295 25 KPFERTGTICTALAHIITGVIGAGVLSLAWSM--AQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFT 102 (466)
Q Consensus 25 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f--~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~ 102 (466)
++.+|+.+.++.+...++.++|+|++.+|... ...|.. .++.+++.++.+...+....|.... -|+.| ..++|.
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~-~P~sG--g~Y~y~ 99 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGAR-VPKAG--SAYLYS 99 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC--cceeeH
Confidence 34688899999999999999999999998753 346755 5777888888888888888886554 34444 244444
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCC----CCCCcccCC-cceehhhHHHHHHhh
Q 012295 103 QAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREG----HNAPCAYGD-TKHMLLFGAVQVVMS 177 (466)
Q Consensus 103 ~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~----~~~~~~~~~-~~~~~i~~i~~~pl~ 177 (466)
++.+|+...+++.+...+.......+.....++++..++......... .... .... .....+..++++-+.
T Consensus 100 ---~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~l 175 (557)
T TIGR00906 100 ---YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVL 175 (557)
T ss_pred ---HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHH
Confidence 677899999999999888877776666667777777766431110000 0000 0000 111112222222233
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCCCCcchhHHHHHHHHHHHHHhhccccceehhh
Q 012295 178 QIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGS-IAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEI 256 (466)
Q Consensus 178 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i 256 (466)
..+..|..++++.+.....+...++.++..+.+...+ +.... ..+.++.. ...+.+++.+.....|+|.|...+...
T Consensus 176 n~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~-~~~~~~~~~~~~f~-p~g~~g~l~g~~~~~faf~Gfd~v~~~ 253 (557)
T TIGR00906 176 LSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVA-NWSITEEKGAGGFM-PYGFTGVLSGAATCFFAFIGFDAIATT 253 (557)
T ss_pred HHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch-hccccccccCCCCC-CcchHHHHHHHHHHHHHHhhHHHHHHh
Confidence 4566777777777666554432222222222221111 11000 00100111 123457788999999999999999999
Q ss_pred hcccCCCCccccchhHHHHHHHHHHHHHHHhhhhhcccccccc---ccccccccccccCchHHHHHHHHHHHHHHHhhc
Q 012295 257 QDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGND---TPGNLLTGFGFYEPYWLIDLANACIVLHLVGGY 332 (466)
Q Consensus 257 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~---~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~ 332 (466)
.+|.|||+ |+++|++..+..++.++|.++...-......+ .++.+...+.....+|...+..+.....+..+.
T Consensus 254 aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl 329 (557)
T TIGR00906 254 GEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSL 329 (557)
T ss_pred HHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 99999996 88999999999999999997765533322211 111111111111234555555555555555543
No 35
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.51 E-value=2.1e-12 Score=127.38 Aligned_cols=368 Identities=12% Similarity=0.101 Sum_probs=216.4
Q ss_pred CCCccccccHHHHHHHHHhhhhchhhhhhHHHHH-hhCh-hhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccH
Q 012295 24 GKPFERTGTICTALAHIITGVIGAGVLSLAWSMA-QLGW-IAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSF 101 (466)
Q Consensus 24 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~-~~G~-~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y 101 (466)
....+|+.+.+.++..++++++|+|++..|.... ++|- ..+.+..++.++++...++..+|... .-+++| .+|
T Consensus 7 ~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT-~ipksG----gd~ 81 (479)
T KOG1287|consen 7 EVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGT-SIPKSG----GDY 81 (479)
T ss_pred cccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-cccCCC----cch
Confidence 3456788899999999999999999999999754 5553 34455668889999999999999543 345555 444
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHhhhH-HHHHHHhhhh-HHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcC
Q 012295 102 TQAVKLYLGDKNQKVCGIFVQESLYGAG-ITYTFTTANC-LRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQI 179 (466)
Q Consensus 102 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~-~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~ 179 (466)
.=+ .++||+.......+.-.+...... ..+.+.++++ ++.+++ .| ..++...-++.+++ +.+...
T Consensus 82 ayi-~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c----------~~p~~~~~lla~~~-l~~lt~ 148 (479)
T KOG1287|consen 82 AYI-SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LC----------DVPRVASKLLAAAL-LVLLTL 148 (479)
T ss_pred hhH-HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CC----------CCchHHHHHHHHHH-HHHHHH
Confidence 433 667788776666555555444444 6777788887 555544 12 22222222333333 333334
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCC--Cc-chhHHHHHHHHHHHHHhhccccceehhh
Q 012295 180 PDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPT--AN-LADKLWLAFQALGDIAFAYPYSIILLEI 256 (466)
Q Consensus 180 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~faf~~h~~~~~i 256 (466)
.|....++.+.+..+....-.+++..+++...... ..+..++..+ .+ +..+..+...++-.-.|||.|..++-.+
T Consensus 149 ~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~--~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~v 226 (479)
T KOG1287|consen 149 INSFSVKWATRVQIVFTIAKLLALLLIIITGLYLL--FWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYV 226 (479)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchhee--EecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccc
Confidence 55666677766666665544444333333322211 1111111110 01 1122335668889999999999999999
Q ss_pred hcccCCCCccccchhHHHHHHHHHHHHHHHhhhhhcccccccc--ccccc-cccccc-cCchHHHHHHHHHHHHHHHhhc
Q 012295 257 QDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGND--TPGNL-LTGFGF-YEPYWLIDLANACIVLHLVGGY 332 (466)
Q Consensus 257 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~--~~~~i-l~~~~~-~~~~~~~~~~~~~~~i~~~~s~ 332 (466)
.+|+|||+ |++++++..++.+++++|+++-+..+.+-..+ ..++. -..+.. ..+++. ..+-++..++...+.
T Consensus 227 teEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~ 302 (479)
T KOG1287|consen 227 TEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSL 302 (479)
T ss_pred hHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhh
Confidence 99999997 99999999999999999999888766655322 22221 111211 012333 555556666666655
Q ss_pred cccccchHHHHHHHHh-hhCCCC-CcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhc
Q 012295 333 QIFSQPVFAFVERWFT-RKYPSS-GFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNF 410 (466)
Q Consensus 333 pl~~~p~~~~~~~~~~-~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~ 410 (466)
-..++..-..+...-. +..|+. ...+++ .+-| ...++..+...++..+..++..+++..+=.-.
T Consensus 303 n~~ifs~SR~~~~~areG~LP~~~s~i~~~--~~TP------------~~allf~~~~~i~~~~~~d~~~LIny~sf~~~ 368 (479)
T KOG1287|consen 303 NSVIFSSSRLFYAGAREGHLPAFFSMISVR--RFTP------------RPALLFSGLLSIVLSLIGDFDQLINYVSFAYW 368 (479)
T ss_pred hhHHHHHHHHHHHHHHccCccHHHHhhcCC--CCCC------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333332222221111 112221 000100 0012 23333444444555566688888888776665
Q ss_pred chhhhhhhhHHHHHHhccC
Q 012295 411 WPLAIYFPVEMYFVQKKIG 429 (466)
Q Consensus 411 ~~~~~ilP~~~~~~~~~~~ 429 (466)
....+.+=++++++.++++
T Consensus 369 l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 369 LFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHHHHHHHhhCCC
Confidence 5666667788888877664
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.50 E-value=1.2e-11 Score=126.09 Aligned_cols=239 Identities=11% Similarity=0.012 Sum_probs=149.9
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
+.+|+.+.++.....++.++|....+.+..+++.|+..-++..++.+++....+..+.|..... ++.| .....+
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~-P~~G-----g~y~~~ 77 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMI-PTAG-----GGYGFA 77 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----CHHHHH
Confidence 4577788999999999999985455668888888987555666777777777777788866543 3333 355577
Q ss_pred HHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCch
Q 012295 106 KLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 185 (466)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l 185 (466)
++.+||+.++++.+..++.......++....++++..+++.. ....+.++. +.++-+.-.+..+..
T Consensus 78 ~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------------~~~~~~~~~-~~~~~~ln~~g~~~~ 143 (442)
T TIGR00908 78 RRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-------------PGWLAALVF-YIVFIGINILGVGEA 143 (442)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------chhHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999988888777888888888887765421 001111111 111222222344555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCC--CcchhHHHHHHHHHHHHHhhccccceehhhhcccCCC
Q 012295 186 EWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPT--ANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 263 (466)
Q Consensus 186 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p 263 (466)
++++.+..+..+... +++ ... ...+.++.+.......+ ......+.+++.++....|+|.|.+......+|+|||
T Consensus 144 ~~i~~~~~~~~~~~l-~i~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P 220 (442)
T TIGR00908 144 AKLEFVVTAVAIIAL-GVF-IGA-MVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNP 220 (442)
T ss_pred HhHHHHHHHHHHHHH-HHH-HHH-HhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 555444333222111 111 111 00010100000000000 0111223467788889999999999999999999999
Q ss_pred CccccchhHHHHHHHHHHHHHHHhhhh
Q 012295 264 PPENKTMKMASMISIFITTFFYLCCGC 290 (466)
Q Consensus 264 ~~~~~~~~~~~~~a~~~~~~~Y~~~g~ 290 (466)
+ |+.+|++..+..++.++|.....
T Consensus 221 ~---r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 221 K---RDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred c---cccCHHHHHHHHHHHHHHHHHHH
Confidence 6 89999999999988888876644
No 37
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.48 E-value=2.2e-11 Score=126.05 Aligned_cols=249 Identities=12% Similarity=0.093 Sum_probs=147.9
Q ss_pred CCccccccHHHHHHHHHhhhhchhhhhhHHH-HHhhChhh-HHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHH
Q 012295 25 KPFERTGTICTALAHIITGVIGAGVLSLAWS-MAQLGWIA-GPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFT 102 (466)
Q Consensus 25 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-f~~~G~~~-g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~ 102 (466)
++.+|+.+.++.+...+++++|+|++..|.. .++.|-.. ..+..++.+++....+..+.|..... |+.| ...
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~-P~sG-----G~y 111 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTI-PKSG-----GEY 111 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC-----chh
Confidence 3457788999999999999999999999876 55566432 23455677777888888888866553 3333 244
Q ss_pred HHHHHHhCCCchhhHHHHHHHH-HhhhHHHHHHHhhhhHHH-HHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCC
Q 012295 103 QAVKLYLGDKNQKVCGIFVQES-LYGAGITYTFTTANCLRA-IQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIP 180 (466)
Q Consensus 103 ~~~~~~~G~~~~~~~~~~~~~~-~~g~~~~y~i~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~ 180 (466)
...++.+||...++..+..+.. ..+.+..+....++++.. +.+. ...+ .+... .+.+..+++.-+.-.+
T Consensus 112 ~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-------~~~~-~~~~~-~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 112 NYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD-------CEVP-EWAIR-LVAVLCVLLLTLVNCL 182 (501)
T ss_pred hhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCCc-hHHHH-HHHHHHHHHHHHHHHh
Confidence 4557789999888887765432 223344444545555422 2211 0000 00001 1111112222222334
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-cCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcc
Q 012295 181 DFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIA-GVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 259 (466)
Q Consensus 181 ~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~ 259 (466)
..+...+++.+.....+...++.++..+....+++....+.. ..++ ......++..++....|+|.|...+....+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~--~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E 260 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEG--TETSAGGIVLAFYSGIWAYGGWNYLNFVTEE 260 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCC--CCCcHHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence 556666666655554443222222233332222111110000 1111 1123446778899999999999999999999
Q ss_pred cCCCCccccchhHHHHHHHHHHHHHHHhhhhhcc
Q 012295 260 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGY 293 (466)
Q Consensus 260 m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy 293 (466)
+|||+ |+.+|++..+..++.++|++..+.-.
T Consensus 261 ~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 261 VKNPY---RTLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred hcCch---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 89999999999999999998865443
No 38
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.47 E-value=2.7e-11 Score=132.17 Aligned_cols=251 Identities=14% Similarity=0.061 Sum_probs=157.8
Q ss_pred ccccccHHHHHHHH-Hhhhhchhhhh-hHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHH
Q 012295 27 FERTGTICTALAHI-ITGVIGAGVLS-LAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQA 104 (466)
Q Consensus 27 ~~~~~s~~~~~~~l-~~~~iG~GiL~-lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~ 104 (466)
+.++.++++.++.- +.+++|+|++- +++...++|...+++.+++.++++..++.-+.+....-.++.| -.| ..
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG----G~Y-~y 148 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG----GAY-YL 148 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc----HHH-HH
Confidence 34567788888877 99999999776 5677889998888899999999999999999997654344444 233 45
Q ss_pred HHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCc
Q 012295 105 VKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHN 184 (466)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~ 184 (466)
..+.+|+..+..+.++.++.....+..|.+.+++++..+++...... ...+ ..+.+.+.++..+++..+. ....+.
T Consensus 149 isralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~--~~~~-~~~~~iia~i~l~ll~~In-~~Gvk~ 224 (953)
T TIGR00930 149 ISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKI--MVDP-INDIRIYGTVTVVVLLGIS-FAGMEW 224 (953)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--ccCc-cccchHHHHHHHHHHHHHH-HhhHHH
Confidence 58889999999999999888888889999999999988775321100 0000 0111211111122222222 233444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC-----C-CCcc-hhHH-HHHHHHHHHHHhhccccceehhh
Q 012295 185 MEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGV-----P-TANL-ADKL-WLAFQALGDIAFAYPYSIILLEI 256 (466)
Q Consensus 185 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~-~~~~-~~~~~~~~~~~faf~~h~~~~~i 256 (466)
..+++.+.+++.+...+.+++..+... .+.+..+ ..+. . +..+ .... .+++..++++.+||.|......+
T Consensus 225 ~ak~q~vl~vi~ll~ll~~iig~~~~~-~~~~~~g-~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~ 302 (953)
T TIGR00930 225 ENKAQVLFLVIVLLSILNIFVGTIIPA-FDKPAKG-FFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANI 302 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeecC-CCCCccc-eeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444332321111111111000 0000000 0000 0 0000 0011 12567888888899999999999
Q ss_pred hcccCCCCccccchhHHHHHHHHHHHHHHHhhhhh
Q 012295 257 QDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF 291 (466)
Q Consensus 257 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~ 291 (466)
.+|+|||+ |++++++..+..++.++|+++.++
T Consensus 303 sgElKnP~---r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 303 SGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHhccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 899999999999999999988754
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.47 E-value=3.2e-11 Score=123.11 Aligned_cols=242 Identities=11% Similarity=0.058 Sum_probs=147.3
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHHH-HHhhChh-hHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAWS-MAQLGWI-AGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQ 103 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-f~~~G~~-~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~ 103 (466)
+.+|+.+.++.+...++.++|+|++..|.. .++.|-. ..+..+++.+++....+..+.|.........| .+.|
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG---~y~y-- 79 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA---DYVY-- 79 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---ceee--
Confidence 467788999999999999999999999986 4556744 34566777788888888888887655333333 4455
Q ss_pred HHHHHhCCCchhhHHHHHHH-HHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCC
Q 012295 104 AVKLYLGDKNQKVCGIFVQE-SLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDF 182 (466)
Q Consensus 104 ~~~~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l 182 (466)
.++.+||...+++.+.... ........+....++++..+.+. .+ .. .....+..++.+-..-.+..
T Consensus 80 -~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~---------~~--~~-~~~~~~~~~~~~~~ln~~gv 146 (445)
T PRK11357 80 -LKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI---------DP--LL-GKFIAAGLIIAFMLLHLRSV 146 (445)
T ss_pred -HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------ch--HH-HHHHHHHHHHHHHHHHHhhh
Confidence 4688999988888886443 33333444555666665433210 00 00 00111111111222233455
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCC
Q 012295 183 HNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKS 262 (466)
Q Consensus 183 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~ 262 (466)
+...+++.+..+..+.-.+++++..+.. .+.++....... + ....+.+.++..++....|+|.|........+|+||
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~ii~g~~~-~~~~~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 223 (445)
T PRK11357 147 EGGAAFQTLITIAKIIPFTIVIGLGIFW-FKAENFAAPTTT-A-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKN 223 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccccCCCcc-c-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcC
Confidence 5555665555544443222222222211 122111110000 0 011122446678889999999999999999999999
Q ss_pred CCccccchhHHHHHHHHHHHHHHHhhhhh
Q 012295 263 PPPENKTMKMASMISIFITTFFYLCCGCF 291 (466)
Q Consensus 263 p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~ 291 (466)
|+ |+.+|++..+..++.++|.+....
T Consensus 224 P~---r~iP~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 224 PG---KTMPRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred cc---ccchHHHHHHHHHHHHHHHHHHHH
Confidence 96 899999999999999999876654
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.43 E-value=1.1e-10 Score=119.01 Aligned_cols=347 Identities=16% Similarity=0.121 Sum_probs=187.3
Q ss_pred HHhhhhchhhhhhHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCchhhHH
Q 012295 40 IITGVIGAGVLSLAW-SMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCG 118 (466)
Q Consensus 40 l~~~~iG~GiL~lP~-~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~ 118 (466)
.+++++|+|++-.|. +.++.|. ..++..++.+++....+..+.|..... |+.| ...+.+++.+||+..+++.
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~-P~~G-----g~y~y~~~~~G~~~gf~~g 75 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVAT-PDTG-----SFSTYADKAIGRWAGYTIG 75 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-----CHHHHHHHHcChHHHHHHH
Confidence 367899999999988 6778886 478888999999999999999976543 3333 5677778999999999999
Q ss_pred HHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceeh-hhHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q 012295 119 IFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHML-LFGAVQVVMSQIPDFHNMEWLSVIAAIMSF 197 (466)
Q Consensus 119 ~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~pl~~~~~l~~l~~~s~~~~~~~~ 197 (466)
+..++.............+..++.+.+ .. ..+.+ +..++++-+.-....|..+.+..+.....+
T Consensus 76 w~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki 140 (446)
T PRK10197 76 WLYWWFWVLVIPLEANIAAMILHSWVP-------------GI--PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKV 140 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-------------cC--cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHH
Confidence 998887766555444444433332211 01 11111 111111222223344555555444443333
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccC----C-CCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCccccchhH
Q 012295 198 AYSFIGFGLGFAKVIENGRIKGSIAGV----P-TANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKM 272 (466)
Q Consensus 198 ~~~~i~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~~~~~~~ 272 (466)
...++.++..+.......+. ....+. + +....+.+.++..++....|+|.|.+.+....+|+|||+ |+++|
T Consensus 141 ~~li~~ii~~~~~~~g~~~~-~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPr 216 (446)
T PRK10197 141 IAILAFIFLGAVAISGFYPY-AEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVR 216 (446)
T ss_pred HHHHHHHHHHHHHhcCCCCC-CCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHH
Confidence 22222222222111111110 000110 0 000112345788999999999999999999999999996 88999
Q ss_pred HHHHHHHHHHHHHHhhhhhcc--cccccccc---c---cccccccccCchHHHHHHHHHHHHHHHhhccccccchHHHHH
Q 012295 273 ASMISIFITTFFYLCCGCFGY--AAFGNDTP---G---NLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVE 344 (466)
Q Consensus 273 ~~~~a~~~~~~~Y~~~g~~gy--~~fg~~~~---~---~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~ 344 (466)
++..+...+.++|+...+.-- ..+++... + ...+.. ...+...+.++...+..+.+..-.....-+.+.
T Consensus 217 ai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~ 293 (446)
T PRK10197 217 ATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELL---NIPHAKLIMDCVILLSVTSCLNSALYTASRMLY 293 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997655422 22322110 1 111222 123344555555555555554322222222222
Q ss_pred HHHhh-hCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcc--chHHHHHHhhhhhcchhhhhhhhHH
Q 012295 345 RWFTR-KYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFP--YFNQVLGVLGALNFWPLAIYFPVEM 421 (466)
Q Consensus 345 ~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p--~~~~i~~~~Ga~~~~~~~~ilP~~~ 421 (466)
..-.+ ..|+ ...+..+.+.| ..-..+.....++..+.....| .++.++++.+... .+.|.++.+.
T Consensus 294 a~ardg~lP~--~~~~~~~~~~P--------~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a 361 (446)
T PRK10197 294 SLSRRGDAPA--VMGKINRSKTP--------YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVS 361 (446)
T ss_pred HHHcCCCcCH--HHHhhCcCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 11111 1221 11111112333 2223333222222222222222 3666777666555 4888888888
Q ss_pred HHHHhc
Q 012295 422 YFVQKK 427 (466)
Q Consensus 422 ~~~~~~ 427 (466)
+++.||
T Consensus 362 ~i~lr~ 367 (446)
T PRK10197 362 QLRMRK 367 (446)
T ss_pred HHHHHH
Confidence 887765
No 41
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.41 E-value=1.5e-10 Score=117.57 Aligned_cols=292 Identities=15% Similarity=0.095 Sum_probs=171.9
Q ss_pred cHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHH-HHHHHHHHhhccCCCCCcCccccccHHHHHHHHhC
Q 012295 32 TICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVT-IVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLG 110 (466)
Q Consensus 32 s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G 110 (466)
+++++....++.++|+|+...| ..++.|.. .++..++.+.+. ...+....|..+. .+++| ...+..++.+|
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~-~p~~G-----G~y~~~~~~~g 73 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSA-YPSAG-----GIYVWVSRAFG 73 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TTSST-----THHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcC-----eeeehhhhccc
Confidence 5788999999999999999999 66666765 566666665555 6777777786554 33333 46677899999
Q ss_pred CCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHH
Q 012295 111 DKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSV 190 (466)
Q Consensus 111 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~ 190 (466)
|+.+++..+...+.......++.....+++...+... . ... .+ ....+.+..++.......+..|..++++.
T Consensus 74 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~--~~-~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 74 PFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPD---L--NPS--PW-PQFLIAIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGG---G--TCS--HH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred ccchhcccceeEEEeeccccccccchhhhhhhccccc---c--ccc--cc-hheeeeecccccceEeeechhhhhhhhhh
Confidence 9999999999998888888777777777776654310 0 000 00 01111111222222333344666666666
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhcccccc-cccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCcccc
Q 012295 191 IAAIMSF-AYSFIGFGLGFAKVIENGRIKGS-IAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENK 268 (466)
Q Consensus 191 ~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~~~ 268 (466)
+.....+ ...++.++..+....++.....+ ..+....... ...+.++...+|+|.|.+......+|+|+ |
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k 217 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGW---PGFLAGFSVAFFAFSGFEAIASLAEENKN-----K 217 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSS---SHHHHHHHHHGGGGTTTTHHHHGGGGSSS-----H
T ss_pred hhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccc---cchhhHHHHHHhhcccccccccccccccc-----h
Confidence 6655555 22222222222221111100000 0000101111 13578899999999999999999999773 7
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhcccccccccc---ccc---cccc-cccCchHHHHHHHHHHHHHHHhhccccccchHH
Q 012295 269 TMKMASMISIFITTFFYLCCGCFGYAAFGNDTP---GNL---LTGF-GFYEPYWLIDLANACIVLHLVGGYQIFSQPVFA 341 (466)
Q Consensus 269 ~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~---~~i---l~~~-~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~ 341 (466)
+.+|++..+..++.++|......-....+++.. ++. ...+ .....++...+..+...+....+.........+
T Consensus 218 ~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR 297 (426)
T PF13520_consen 218 TIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASR 297 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhh
Confidence 899999999999999999887665555544321 121 1111 100123566666666666666665444444444
Q ss_pred HHHHHH
Q 012295 342 FVERWF 347 (466)
Q Consensus 342 ~~~~~~ 347 (466)
.+...-
T Consensus 298 ~l~~~a 303 (426)
T PF13520_consen 298 LLYAMA 303 (426)
T ss_dssp HHHHHH
T ss_pred cccccc
Confidence 444443
No 42
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.36 E-value=6.9e-10 Score=110.32 Aligned_cols=365 Identities=12% Similarity=0.053 Sum_probs=231.1
Q ss_pred ccccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 27 FERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 27 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
-+|+...+.-.+.-+++.||+| .++.-.+.++.|....++..++++.+.+..+.-|.|...... .+| +|.+.+
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sG-----sF~~ya 115 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSG-----SFSTYA 115 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC-----chhhhh
Confidence 4677888899999999999999 567899999999999999999999999999999999765543 444 689999
Q ss_pred HHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHh--hcCCCCC
Q 012295 106 KLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVM--SQIPDFH 183 (466)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl--~~~~~l~ 183 (466)
.+..+|-.+..+.+..+++...++-.-++..+..++.+.+.. .+...|..++.++++.+ .-.|.+.
T Consensus 116 ~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~------------v~~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 116 TRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT------------VPPWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC------------CChHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999888888888888776421 12235666666555443 3567777
Q ss_pred chh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCC
Q 012295 184 NME-WLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKS 262 (466)
Q Consensus 184 ~l~-~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~ 262 (466)
+.. |+|.+-++.++.+.++.++. ......++..-+....-++-.-.+++.++...+-+..|||+|.+.+--...|-+|
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~-~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~n 262 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIII-ICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESEN 262 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCC
Confidence 777 56777777777655544432 2222222111111111000111234668889999999999999999999999999
Q ss_pred CCccccchhHHHHHHHHHHHHHHHhhhhh-ccc-ccccc----------ccccccccccccCchHHHHHHHHHHHHHHHh
Q 012295 263 PPPENKTMKMASMISIFITTFFYLCCGCF-GYA-AFGND----------TPGNLLTGFGFYEPYWLIDLANACIVLHLVG 330 (466)
Q Consensus 263 p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~-gy~-~fg~~----------~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (466)
|+ |..+|++.-..--..++|+..-+. |.+ .|.|. ..+++...+.+.+-..+..+.|..++++++.
T Consensus 263 P~---K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlS 339 (541)
T COG0833 263 PR---KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLS 339 (541)
T ss_pred ch---hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHH
Confidence 97 899999998888888888844332 333 23221 1223333332212123556777777777766
Q ss_pred hccccccchHHHHHHHHhhh-CCCC-CcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccc--hHHHHHHhh
Q 012295 331 GYQIFSQPVFAFVERWFTRK-YPSS-GFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY--FNQVLGVLG 406 (466)
Q Consensus 331 s~pl~~~p~~~~~~~~~~~~-~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~--~~~i~~~~G 406 (466)
+----.+..-+.+-.+-.++ -|+- ...|| ..+| ..-++++.+..+++++.+..-.. ++-++++.|
T Consensus 340 a~NS~lYasSR~L~sLA~~g~APk~f~~~~r---~GvP--------~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg 408 (541)
T COG0833 340 AANSGLYASSRMLYSLAKQGKAPKIFAKVDR---RGVP--------LVALLVTLLFGLLAFLNSSFKETTVFNWLLNISG 408 (541)
T ss_pred HhhccchHHHHHHHHHHhcCCCchHHHhhCC---CCCc--------hHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 64222222223333332221 1211 11222 1233 34455555555566555554221 455555555
Q ss_pred hhhcchhhhhhhhHHHHHHh
Q 012295 407 ALNFWPLAIYFPVEMYFVQK 426 (466)
Q Consensus 407 a~~~~~~~~ilP~~~~~~~~ 426 (466)
-.. .++.+-=++-|++.|
T Consensus 409 ~s~--~i~W~~I~~shirFR 426 (541)
T COG0833 409 LSG--FIAWGSICLSHIRFR 426 (541)
T ss_pred HHH--HHHHHHHHHHHHHHH
Confidence 333 333334445566554
No 43
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.36 E-value=1.2e-10 Score=115.48 Aligned_cols=238 Identities=15% Similarity=0.154 Sum_probs=154.6
Q ss_pred cccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHh
Q 012295 30 TGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYL 109 (466)
Q Consensus 30 ~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~ 109 (466)
+.|.+|....++++++|+|++.+|....+.+--.+.+..++.++........+.+..++.++ .+..|..++.+
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-------~~~~~~~~~~~ 74 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-------KNFSEILSKYL 74 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-------CCHHHHHHHHh
Confidence 46778999999999999999999998777555567778888888888888888887655322 46899999999
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHH
Q 012295 110 GDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLS 189 (466)
Q Consensus 110 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s 189 (466)
||+.+.+..+....+....+.......++.++.... + +.+ .+...+..+++......+.++...+++
T Consensus 75 Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~----~tp-----~~~~~l~~l~~~~~~~~~Gi~~i~r~~ 141 (359)
T TIGR00912 75 GKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL----P----RTP-----IIVIIILIIIVSIYIVRKGIEVLLRTA 141 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C----CCC-----HHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 999999998888777777666555555555543321 0 011 111122222222233335566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHH-HHHHhhccccceehhhhcccCCCCcccc
Q 012295 190 VIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQAL-GDIAFAYPYSIILLEIQDTLKSPPPENK 268 (466)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~h~~~~~i~~~m~~p~~~~~ 268 (466)
.+.....+...+ ++... ...+..+. ++..+.. ..+..+...+. +...++|.+...+.-...++||| |
T Consensus 142 ~i~~~~~i~~~~--~il~~-~~~~~~~~----~~l~P~~-~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~----~ 209 (359)
T TIGR00912 142 EILLIIFLILFI--LVLIL-LAPKLGNI----KNLLPVL-ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK----K 209 (359)
T ss_pred HHHHHHHHHHHH--HHHHH-HhcccccH----HHccCcc-ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----h
Confidence 666554442210 11111 11111111 1111111 11223444443 47889999999888888999987 8
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhcccccccc
Q 012295 269 TMKMASMISIFITTFFYLCCGCFGYAAFGND 299 (466)
Q Consensus 269 ~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~ 299 (466)
|.+|+...+..++.++|...-......+|.+
T Consensus 210 ~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~ 240 (359)
T TIGR00912 210 KIKKSIIKAIIIGVLLYILTTFVSISVFGGN 240 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHheecHH
Confidence 9999999999999999998877777777754
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.31 E-value=2e-09 Score=110.59 Aligned_cols=251 Identities=16% Similarity=0.133 Sum_probs=158.8
Q ss_pred CCccccccHHH-HHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHH
Q 012295 25 KPFERTGTICT-ALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQ 103 (466)
Q Consensus 25 ~~~~~~~s~~~-~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~ 103 (466)
++.+|+.+.++ ......+.++|.|++.+|......+ ....+..++.+++....+..+.|.... .++.| .+.+
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~-~p~~G-----G~y~ 80 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSA-IPSAG-----GAYA 80 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC-----Ceee
Confidence 34455556666 7788899999999999999887765 222333455556666666777776653 33333 4666
Q ss_pred HHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhH--HHHHHhhcCCC
Q 012295 104 AVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFG--AVQVVMSQIPD 181 (466)
Q Consensus 104 ~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--i~~~pl~~~~~ 181 (466)
..++.+||+..+.+.+..++.......+........+..+.+... .. ......+..+.. ....-+.-.+.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~ln~~G 152 (466)
T COG0531 81 YAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-LL-------SIGPLLIILIALALIALLTLLNLRG 152 (466)
T ss_pred ehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hh-------cCCchHHHHHHHHHHHHHHHHHHhh
Confidence 779999999999999999998888888888888887666654210 00 000011111111 12223333445
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCc-chhHHHHHHHHHHHHHhhccccceehhhhccc
Q 012295 182 FHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTAN-LADKLWLAFQALGDIAFAYPYSIILLEIQDTL 260 (466)
Q Consensus 182 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m 260 (466)
.+...+...+.....+...++..+..+.. .+...... ..+.. ..........++....++|.|-.......+|+
T Consensus 153 ~~~~~~~~~~~~~~~i~~~i~~~i~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 227 (466)
T COG0531 153 IKASAKINSIITILKIIILLIFIILGLFA---FGFSNGNL--FAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV 227 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCcccccc--CCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh
Confidence 55555655555555444333222222222 22110111 11111 11223357789999999999999999999999
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHHhhhhhccccccc
Q 012295 261 KSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGN 298 (466)
Q Consensus 261 ~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~ 298 (466)
|||+ |+.+|++..+..++.++|+..........++
T Consensus 228 knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 228 KNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred cCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 9986 7899999999999999999888776666654
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.25 E-value=1.9e-08 Score=103.58 Aligned_cols=253 Identities=11% Similarity=-0.066 Sum_probs=143.2
Q ss_pred CccccccHHHHHHHHHhhh-hchhhhhhHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHH
Q 012295 26 PFERTGTICTALAHIITGV-IGAGVLSLAWS-MAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQ 103 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~-iG~GiL~lP~~-f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~ 103 (466)
+-+|+.+.++.+..-++.+ +|.|+.+.+.. ..+.|- ..+...++.++.....+..+.|..... |..| ...+
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~-P~aG-----G~Y~ 82 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARY-PISG-----AIYQ 82 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC-----CHHH
Confidence 4577888888888777764 89999998765 555665 456777888888888888888866553 3333 3455
Q ss_pred HHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhc--ccCCCCCCCcccCCcceehhhH-HHHHHhhcCC
Q 012295 104 AVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNC--YHREGHNAPCAYGDTKHMLLFG-AVQVVMSQIP 180 (466)
Q Consensus 104 ~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~-i~~~pl~~~~ 180 (466)
.+++.+||...+++.+..++.......+........+..+..... ...++...+ ......+.+... +++.-+.-.+
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~in~~ 161 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSP-SGAANAVLLGSVLLVLTTVINCI 161 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCC-CchHHHHHHHHHHHHHHHHHHHh
Confidence 668889999999999888877655444444444444433321110 000000000 000001111111 1122222334
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhccc
Q 012295 181 DFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTL 260 (466)
Q Consensus 181 ~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m 260 (466)
..|..++++.+..+..+...+++++..+... ++++ +............+....+..+.....|+|.|-+.+....+|+
T Consensus 162 g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~-~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~ 239 (475)
T TIGR03428 162 GVEWMSRVNTIGVTCEIVGVLAVIGVLFTHA-QRGP-GVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET 239 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc-ceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh
Confidence 4566666665555444322222222222111 1111 1000000000111112344556677889999999999999999
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHHhhhhh
Q 012295 261 KSPPPENKTMKMASMISIFITTFFYLCCGCF 291 (466)
Q Consensus 261 ~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~ 291 (466)
|||+ |+.+|++..+..+..++|.++-+.
T Consensus 240 knP~---r~iPrai~~s~~i~~~~~~~~~~~ 267 (475)
T TIGR03428 240 KNPR---RVAPRTILTALSVSALGGGLMILG 267 (475)
T ss_pred cCcc---hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9997 899999999998887766544443
No 46
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.21 E-value=3.2e-08 Score=102.36 Aligned_cols=253 Identities=11% Similarity=0.027 Sum_probs=135.0
Q ss_pred ccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHH-HHHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 27 FERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVT-IVSSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 27 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
.+|+.++++.+...+++++|.+ .+|.++++.|.. +++..++.+++. .-.+..+.|.....+.+.| .-.+-.
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-----G~Y~w~ 76 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG-----GIYSWM 76 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----cHHHHH
Confidence 3567899999999999999976 568888888875 566666666554 4455667776554332222 355566
Q ss_pred HHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHH-HHhhhcccCCCCCCCcccCCcceehhhHHH--HHHhhcCCCC
Q 012295 106 KLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRA-IQKSNCYHREGHNAPCAYGDTKHMLLFGAV--QVVMSQIPDF 182 (466)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~--~~pl~~~~~l 182 (466)
++.+||+.++++.+..+........+........... ++.. +..+..+...........++..+. +.-+...+.+
T Consensus 77 ~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~ 154 (496)
T PRK15238 77 NKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGK--DTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGI 154 (496)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--chhhhhhhhcccchHHHHHHHHHHHHHHHHHHccch
Confidence 8999999988776554443332221111000000001 1110 000000000000011111111111 2223345667
Q ss_pred CchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccccccc--ccC-CCCc-chhHHHHHHHHHHHHHhhccccceehhhh
Q 012295 183 HNMEWLSVIAAIMSFAYSFIGF-GLGFAKVIENGRIKGSI--AGV-PTAN-LADKLWLAFQALGDIAFAYPYSIILLEIQ 257 (466)
Q Consensus 183 ~~l~~~s~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~--~~~-~~~~-~~~~~~~~~~~~~~~~faf~~h~~~~~i~ 257 (466)
+..++++.++....+...++.+ +..+.....+++...+. ... ++.. ......+...++....|+|.|.+......
T Consensus 155 ~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 234 (496)
T PRK15238 155 NKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLV 234 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7777777665443332111111 11111111121111000 011 0001 11112356678888999999999999999
Q ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHhhhhhc
Q 012295 258 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFG 292 (466)
Q Consensus 258 ~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~g 292 (466)
+|+|||+ |+.+|++..+...+.++|.+..++.
T Consensus 235 ~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 235 DKTENPE---KNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HhccCCC---ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 8999999999999999999765443
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.19 E-value=2.3e-08 Score=103.19 Aligned_cols=244 Identities=9% Similarity=-0.026 Sum_probs=132.2
Q ss_pred CccccccHHHHHHHHHhhhhc--hhhhh-hHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHH
Q 012295 26 PFERTGTICTALAHIITGVIG--AGVLS-LAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFT 102 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG--~GiL~-lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~ 102 (466)
+.+|+.+.++.+...+. ++| .|+.. .+.+.++.|....+...++.+++....+..+.|..... |..| ...
T Consensus 9 ~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~-P~~G-----g~y 81 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAY-PTSG-----GQY 81 (482)
T ss_pred eeecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhC-CCCc-----cHH
Confidence 45677788777766665 444 56544 45567777776567778888899999999999976543 3333 345
Q ss_pred HHHHHHhCC----CchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhH--HHHHHh
Q 012295 103 QAVKLYLGD----KNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFG--AVQVVM 176 (466)
Q Consensus 103 ~~~~~~~G~----~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--i~~~pl 176 (466)
+.+++.+|+ ...+++.+..++.....+.+.....++++..+..... + +.. +..+.....++.. +++.-+
T Consensus 82 ~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~-~~~---~~~~~~~~~~i~~~~~~~~~~ 156 (482)
T TIGR00907 82 FWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTT-P-GRE---YIPTRWHIFGIMIGIHLIHAL 156 (482)
T ss_pred HHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-CCC---ccccCchhhhhHHHHHHHHHH
Confidence 555677664 4566777777766666666666666666655543210 0 000 0001011111111 111222
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccc--ccccCCCCc-ch-hHHHHHHHHHHHHHhhccccc
Q 012295 177 SQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGR-IKG--SIAGVPTAN-LA-DKLWLAFQALGDIAFAYPYSI 251 (466)
Q Consensus 177 ~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~--~~~~~~~~~-~~-~~~~~~~~~~~~~~faf~~h~ 251 (466)
.-....|..+.+..+..+..+...+++.+..+. ..++. ... ...+..+.. .+ ...+....++....|+|.|-+
T Consensus 157 in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~--~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e 234 (482)
T TIGR00907 157 INSLPTKWLPRITSSAAYWSLLGFLTICITLLA--CKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYD 234 (482)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhc--cCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcc
Confidence 222334445555444333222111111111111 11110 000 011111111 00 111245566677889999999
Q ss_pred eehhhhcccCCCCccccchhHHHHHHHHHHHHHHH
Q 012295 252 ILLEIQDTLKSPPPENKTMKMASMISIFITTFFYL 286 (466)
Q Consensus 252 ~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~ 286 (466)
......+|+|||+ |+++|++..+..+..+++.
T Consensus 235 ~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~ 266 (482)
T TIGR00907 235 GTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGF 266 (482)
T ss_pred hhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHH
Confidence 9999999999996 8999999999887765444
No 48
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.17 E-value=2.8e-08 Score=102.26 Aligned_cols=243 Identities=13% Similarity=0.018 Sum_probs=119.8
Q ss_pred ccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHH-HHHHHHHHhhccCCCCCcCccccccHHHHHHHHh
Q 012295 31 GTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVT-IVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYL 109 (466)
Q Consensus 31 ~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~ 109 (466)
.+.+.-++..+...+ ++-.+|.+ ++.|.. .++..++.+++. .-.+....|.....+.. | ...+.+++.+
T Consensus 3 ~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~~-G-----G~y~~~~~a~ 72 (474)
T TIGR03813 3 LTVVTLAIMNITAVV--SLRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPEK-G-----GVFRWVGEAF 72 (474)
T ss_pred ccHHHHHHHHHHHHH--HhhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCC-C-----CceeeHhhhc
Confidence 444444443333442 55666755 578864 344555555444 34666677765543332 3 3456669999
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHH---HHhhcCCCCCchh
Q 012295 110 GDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQ---VVMSQIPDFHNME 186 (466)
Q Consensus 110 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~---~pl~~~~~l~~l~ 186 (466)
|++.+.+..+..++.......+-+......+..+.... .. .... ....++.....++. .-+...+..|..+
T Consensus 73 G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~-~~----~~~~-~~~~~~~~~~~l~~~~~~~~in~~gv~~~~ 146 (474)
T TIGR03813 73 GARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEA-TV----DESL-AGNKLYVLVSVLFVYWLATFIALRGVAAFT 146 (474)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cc----Cccc-ccccHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 99999999888777664322211111121111111100 00 0000 01112111222221 2223445555555
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccc--cccc-CCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCC
Q 012295 187 WLSVIAAI-MSFAYSFIGFGLGFAKVIENGRIKG--SIAG-VPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKS 262 (466)
Q Consensus 187 ~~s~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~ 262 (466)
.++.+... ..+.-.++.++..+.....+++... +..+ .|+. ....... ....+.|+|.|.+.+....+|+||
T Consensus 147 ~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~~~~-~~~~~~~af~G~e~~~~~a~E~kn 222 (474)
T TIGR03813 147 KVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDF---TNFDNVV-LAASIFLFYAGMEMNAVHVKDVDN 222 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCc---cccccHH-HHHHHHHHHhchhHhHHHHHhccC
Confidence 55543321 1111111112222222222221110 0011 1110 1111222 223467899999999999999999
Q ss_pred CCccccchhHHHHHHHHHHHHHHHhhhhhccccc
Q 012295 263 PPPENKTMKMASMISIFITTFFYLCCGCFGYAAF 296 (466)
Q Consensus 263 p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~f 296 (466)
|+ |+.+|++..+..++.++|.+..+.-....
T Consensus 223 P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~ 253 (474)
T TIGR03813 223 PD---KNYPIAILIAALGTVLIFVLGTLAIAFII 253 (474)
T ss_pred cc---cchhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 96 89999999999999999987655543333
No 49
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.15 E-value=3.1e-08 Score=102.49 Aligned_cols=238 Identities=13% Similarity=0.042 Sum_probs=122.3
Q ss_pred cccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHH--HHHHHHHHhhccCCC-CCcCccccccHHHH
Q 012295 28 ERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVT--IVSSSLLCDCYRFPD-PEVGPNRIRSFTQA 104 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~--~~t~~~l~~~~~~~~-~~~g~~~~~~y~~~ 104 (466)
+++.+.++-+...+... .++-.+| .+++.|+- .+...+++.+. .-.+....|...... +..| ..+-
T Consensus 3 ~~~l~~~~~~~~~~~~v--~~~~~~~-~~a~~G~~--~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG------~y~w 71 (507)
T TIGR00910 3 AKKLSLFGFFAITASMV--LAVYEYP-TFATSGFH--LVFFLLLGGILWFIPVALCAAEMATVDGWEEGG------IFAW 71 (507)
T ss_pred CcEeeHHHHHHHHHHHH--HHHHhhH-HHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCC------eeee
Confidence 45577777766665555 4567888 57788854 44444444443 446677777654422 2333 4455
Q ss_pred HHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHH---HHhhcCCC
Q 012295 105 VKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQ---VVMSQIPD 181 (466)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~---~pl~~~~~ 181 (466)
+++++||+.++++.+..+++......+........+..+... .+ +.. ..++..+..+++ ..+...+.
T Consensus 72 v~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~----~~-----~~~-~~~~~~i~~l~i~~~~t~~n~~G 141 (507)
T TIGR00910 72 VSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF----PA-----LNE-DPIIKFIAALIIFWALAFSQFGG 141 (507)
T ss_pred hhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ch-----hcc-CcHHHHHHHHHHHHHHHHHHHhh
Confidence 699999999998877777766533222221111112222111 00 000 011122222222 22223344
Q ss_pred CCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhccc
Q 012295 182 FHNMEWLSVIAAIMS-FAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTL 260 (466)
Q Consensus 182 l~~l~~~s~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m 260 (466)
.|...+++.++.+.. +...+++++..+.....+++..... +..+..+.....+....+..++|+|.|-+......+|+
T Consensus 142 ~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~ 220 (507)
T TIGR00910 142 TKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEI-DSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINEL 220 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCC-cHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHc
Confidence 455555444432211 2111122222222222222211000 00000011111233445555799999999999999999
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHHhhhh
Q 012295 261 KSPPPENKTMKMASMISIFITTFFYLCCGC 290 (466)
Q Consensus 261 ~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~ 290 (466)
|||+ |+++|++..+..++.++|.+..+
T Consensus 221 knP~---r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 221 ENPG---RDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred cCCc---ccccHHHHHHHHHHHHHHHHHHH
Confidence 9996 89999999999988888876444
No 50
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.99 E-value=9e-09 Score=88.78 Aligned_cols=220 Identities=12% Similarity=0.202 Sum_probs=138.8
Q ss_pred HHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhcc-------------CCCC----------
Q 012295 35 TALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYR-------------FPDP---------- 91 (466)
Q Consensus 35 ~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~-------------~~~~---------- 91 (466)
......+|-++|+|-|++|.+|+.+||++++.++.+.+++++.+....+++.. +.++
T Consensus 16 vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd 95 (319)
T KOG3832|consen 16 VGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASD 95 (319)
T ss_pred hhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCC
Confidence 45567899999999999999999999999999999999999999999888420 0000
Q ss_pred ---------------------CcC------ccccccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHH
Q 012295 92 ---------------------EVG------PNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQ 144 (466)
Q Consensus 92 ---------------------~~g------~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 144 (466)
+.| +.+....+|++...+.|.+..+..++++++++|....|......+..++.
T Consensus 96 ~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~it 175 (319)
T KOG3832|consen 96 DDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNIT 175 (319)
T ss_pred CcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhh
Confidence 011 12223467888899999999999999999999999999887777766665
Q ss_pred hh-----hcccC-C---CCCCCccc-------CCcceehhhHHHH-HHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 012295 145 KS-----NCYHR-E---GHNAPCAY-------GDTKHMLLFGAVQ-VVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLG 207 (466)
Q Consensus 145 ~~-----~~~~~-~---~~~~~~~~-------~~~~~~~i~~i~~-~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~ 207 (466)
-. .|.-+ + .+...|+- -++++++++.+++ +|+.+ -++++.+.+..+..++-+.-......+.
T Consensus 176 caa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf-~diqktk~iqiltslmrw~~~~~g~~l~ 254 (319)
T KOG3832|consen 176 CAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTF-ADIQKTKHIQILTSLMRWAAFILGISLA 254 (319)
T ss_pred hhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeE-eccccchhHHHHHHHHHHHhccchhhhh
Confidence 21 12111 1 11123321 2345555555443 35554 3466666666666665553222222211
Q ss_pred HHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCC
Q 012295 208 FAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 263 (466)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p 263 (466)
-.+.- .++.....| .--+-++-..++...|+|.+|..+|.....++..
T Consensus 255 tmqae----edaa~a~p~----arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 255 TMQAE----EDAAAAHPP----ARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhhc----ccccccCCc----cccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 11111 111111111 1111122357788899999999999988887743
No 51
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.93 E-value=1.4e-08 Score=104.38 Aligned_cols=307 Identities=11% Similarity=-0.000 Sum_probs=191.9
Q ss_pred CccccccHHHHHHHHHhhhhchhhhh-hHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCc-CccccccHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLS-LAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEV-GPNRIRSFTQ 103 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~-lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~-g~~~~~~y~~ 103 (466)
+-+|+.+.+.-...-+++++|+|++= ...+.++.|-..-++..++.+...+.+..-+.|.... -|+. | ++..
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~-~P~~aG-----s~~~ 100 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVR-FPVSAG-----SFYT 100 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHhee-cccccc-----ccee
Confidence 55788888888888899999999765 5778888888877888899999999999999996543 3442 3 4555
Q ss_pred HHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehh--hHHHHHHhhcCCC
Q 012295 104 AVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLL--FGAVQVVMSQIPD 181 (466)
Q Consensus 104 ~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~i~~~pl~~~~~ 181 (466)
.+++..|+-...++.+..+++.+..+-+-....+.+++.+.. ......... ..+...|..+ ..++++.+...+-
T Consensus 101 ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~~--~~~~~~~~~~fla~~v~in~~gv~~ 176 (554)
T KOG1286|consen 101 YAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILVD--TVNPGGWIPDFLAFILIINLFGVLA 176 (554)
T ss_pred eeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--ccccccccc--CCCCCccHHHHHHHHHHHHHHHHhh
Confidence 558888999999999999999999999999999999999871 000000000 0111223322 2233344445554
Q ss_pred CCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhc--cccccc-ccCCCCcchhHHHHHHHHHHHHHhhccccceehhhh
Q 012295 182 FHNMEWLS-VIAAIMSFAYSFIGFGLGFAKVIENG--RIKGSI-AGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQ 257 (466)
Q Consensus 182 l~~l~~~s-~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~ 257 (466)
..+.+... ..-++.++.+.++.+ +.......++ +..+.. ...|..-....+.+++.++....|+|.|-..+-...
T Consensus 177 ~ge~ef~~~~~kvl~~v~~~Il~i-Vi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a 255 (554)
T KOG1286|consen 177 YGEVEFSLAFNKILTAVGFIILAI-VIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTA 255 (554)
T ss_pred ccceeehHHHHHHHHHHHHHHhhe-eeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHH
Confidence 44555433 333333333222222 2222222222 111111 110111112236678899999999999999999999
Q ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHhhhhhccc--ccccc-cccccccccccc---CchHHHH---HHHHHHHHHH
Q 012295 258 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYA--AFGND-TPGNLLTGFGFY---EPYWLID---LANACIVLHL 328 (466)
Q Consensus 258 ~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~--~fg~~-~~~~il~~~~~~---~~~~~~~---~~~~~~~i~~ 328 (466)
+|-|||+ |..++++..+...+.++|....+.--+ .|.+. ..++....-++. +..+... +.++..++.+
T Consensus 256 ~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~ 332 (554)
T KOG1286|consen 256 EEAKNPR---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGL 332 (554)
T ss_pred HhccCCc---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHH
Confidence 9999997 999999999999999999987765333 23221 211111111110 1122333 7777777777
Q ss_pred HhhccccccchHHHHHHH
Q 012295 329 VGGYQIFSQPVFAFVERW 346 (466)
Q Consensus 329 ~~s~pl~~~p~~~~~~~~ 346 (466)
.++--.-.++.-..+..+
T Consensus 333 ~s~~n~~~y~~sR~l~am 350 (554)
T KOG1286|consen 333 LSSLNSSLYAGSRVLYAL 350 (554)
T ss_pred HHHHHHHhHHhHHHHHHH
Confidence 777655566655555444
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.89 E-value=1.2e-08 Score=105.25 Aligned_cols=275 Identities=17% Similarity=0.159 Sum_probs=160.5
Q ss_pred HHhhhhchhhhh-hHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCchhhHH
Q 012295 40 IITGVIGAGVLS-LAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCG 118 (466)
Q Consensus 40 l~~~~iG~GiL~-lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~ 118 (466)
.+.+++|+|++. .+.+..+.|....++..++.+++...++.-+.|..++.+ +.| .+.+.+++.+||..+..+.
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~G-----g~y~y~~~~lg~~~Gf~~g 79 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAG-----GFYAYASRGLGPALGFAAG 79 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-ccc-----chhhhhhhccCCcCCceee
Confidence 356788998555 677888999977788899999999999999999766543 333 5777889999999999999
Q ss_pred HHHHHHHhhhHHHHHHHhhhhHHHH--HhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 012295 119 IFVQESLYGAGITYTFTTANCLRAI--QKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMS 196 (466)
Q Consensus 119 ~~~~~~~~g~~~~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~~~~~~ 196 (466)
+..++.............+..++.+ .... ...+ .+. ..+..+..+++..+.+ ...+..+.....-....
T Consensus 80 w~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~-~~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~ 150 (478)
T PF00324_consen 80 WAYWLSYIAAIAAEATAAGSFLQFWGYFPGL------PSTW-VWG-ILIAIIFILLITLLNL-FGVRVSGKIEFILTIIK 150 (478)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhccccccccc------cccc-ccc-chhhhhhhhhhhhhhh-hhhhccchHHHHHHHHh
Confidence 9887777777666666666555444 1110 0000 000 0112222222222222 22333333222222211
Q ss_pred HHHHHHHHHHH-HHHHHhhccccc-----ccc---cCCC---CcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCC
Q 012295 197 FAYSFIGFGLG-FAKVIENGRIKG-----SIA---GVPT---ANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPP 264 (466)
Q Consensus 197 ~~~~~i~~~~~-~~~~~~~~~~~~-----~~~---~~~~---~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~ 264 (466)
+...+..++.. +......++... +.. ..++ ......+.+++.++....++|.|-+......+|.|||+
T Consensus 151 ~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~ 230 (478)
T PF00324_consen 151 LIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR 230 (478)
T ss_pred hhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch
Confidence 11111111111 111111111111 000 1110 01122356788999999999999999999999999997
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhhhcccccccccccc---------ccccccccCchHHHHHHHHHHHHHHHhhc
Q 012295 265 PENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGN---------LLTGFGFYEPYWLIDLANACIVLHLVGGY 332 (466)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~---------il~~~~~~~~~~~~~~~~~~~~i~~~~s~ 332 (466)
|+++|++..+.....++|.......-...+.+..+. +..........+...+.++....+...+.
T Consensus 231 ---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~ 304 (478)
T PF00324_consen 231 ---KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSA 304 (478)
T ss_pred ---hhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhh
Confidence 899999999999999999987776555555443211 11111111234455566666665555544
No 53
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.87 E-value=4.1e-07 Score=88.64 Aligned_cols=236 Identities=13% Similarity=0.107 Sum_probs=151.0
Q ss_pred cccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHh
Q 012295 30 TGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYL 109 (466)
Q Consensus 30 ~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~ 109 (466)
|.|..|....+..+++|+|++.+|....+.+- .|.+..++.+.......++..+..++. +..+..|..++.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~-------p~~~l~~~~~~~~ 72 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRF-------PGKTLVEISEKLF 72 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHh
Confidence 35678999999999999999999998766541 334444444444444444444443332 2378999999999
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHH
Q 012295 110 GDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLS 189 (466)
Q Consensus 110 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s 189 (466)
||+.+.++.+...+..+......+...++.++...-. +.+ .+.+....+++......+.++.+.+.+
T Consensus 73 Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp--------~TP-----~~~i~~~~ll~~~y~a~~G~e~i~R~~ 139 (320)
T PF03845_consen 73 GKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLP--------ETP-----IWVIILLFLLVAAYAARKGIEVIARVA 139 (320)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cCC-----HHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999988888887777777776665421 011 122222222333334446677777655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCccccc
Q 012295 190 VIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKT 269 (466)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~~~~ 269 (466)
.+.....+...+.+. ....++.+. +...+. ...+..+.+.+.....+.|.+-..+.-+....|+| +|
T Consensus 140 ~~~~~~~~i~~~~i~----~~~~~~~~~----~~l~P~-~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~ 206 (320)
T PF03845_consen 140 EILFPIFLILLLLIL----LLSIPNIDW----DNLLPV-LESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KK 206 (320)
T ss_pred HHHHHHHHHHHHHHH----HHhcccCCH----HHeeCc-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hH
Confidence 554444332221111 111122111 111111 12234466677777778888888888888899988 88
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcccccccc
Q 012295 270 MKMASMISIFITTFFYLCCGCFGYAAFGND 299 (466)
Q Consensus 270 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~ 299 (466)
.+|....+..++.++|...-+.....||.+
T Consensus 207 ~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 207 LKKSLLIAILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 899999999999988888777777777754
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.65 E-value=2e-05 Score=80.39 Aligned_cols=194 Identities=13% Similarity=0.046 Sum_probs=109.1
Q ss_pred ccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhc
Q 012295 99 RSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQ 178 (466)
Q Consensus 99 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~ 178 (466)
.++.-+.|..||++|..+..++..+...+-........++.+..+++....+................+++.++.+++..
T Consensus 76 l~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~ 155 (442)
T TIGR00800 76 LPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLF 155 (442)
T ss_pred CCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999988887642211000000000011222344445555444
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHH-hhccccceehhhh
Q 012295 179 IPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIA-FAYPYSIILLEIQ 257 (466)
Q Consensus 179 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~h~~~~~i~ 257 (466)
..-.+..+.....+....+. +++..++...+........+..+...+....+.+..+++..+ +.-..-.+.++..
T Consensus 156 ~~g~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~Dys 231 (442)
T TIGR00800 156 FFGYKIRHLFEWLAVVPPFA----AFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFT 231 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhh
Confidence 44445444555555543332 111222222222211000001110111222344444444422 2334667899999
Q ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHhhhhhcccc----ccccc
Q 012295 258 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAA----FGNDT 300 (466)
Q Consensus 258 ~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~----fg~~~ 300 (466)
|.+|+| ++-.+....++....+....+|..+-.. +|+..
T Consensus 232 Ry~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 232 RFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred hhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 999987 5555557777777777777777776655 76553
No 55
>PRK11375 allantoin permease; Provisional
Probab=98.51 E-value=0.00018 Score=73.97 Aligned_cols=183 Identities=7% Similarity=-0.011 Sum_probs=97.7
Q ss_pred ccHHHHHHHHhCCCchhhHHHHHH-HHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCC---CcccCC--cceehhhHHH
Q 012295 99 RSFTQAVKLYLGDKNQKVCGIFVQ-ESLYGAGITYTFTTANCLRAIQKSNCYHREGHNA---PCAYGD--TKHMLLFGAV 172 (466)
Q Consensus 99 ~~y~~~~~~~~G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~---~~~~~~--~~~~~i~~i~ 172 (466)
.++.-+.|..||++|..+..++.. +..++-........++.+..+++....+....+. ....+. ....+++.++
T Consensus 89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l 168 (484)
T PRK11375 89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLV 168 (484)
T ss_pred CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHH
Confidence 689999999999999888888874 5677777777788888888777553221111000 001111 1111233444
Q ss_pred HHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCC--CcchhHHHHHHHHHHHHHhhcc-c
Q 012295 173 QVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPT--ANLADKLWLAFQALGDIAFAYP-Y 249 (466)
Q Consensus 173 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~faf~-~ 249 (466)
..++.+ ...+.++++..++....+...+...+..+.. . .........+. .......+.+..++...+=++. .
T Consensus 169 ~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~---~-g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~ 243 (484)
T PRK11375 169 NVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISL---V-GIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAP 243 (484)
T ss_pred HHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---c-CCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHH
Confidence 455554 4477777777777766553222222222222 1 11111101010 0111123344444444333444 4
Q ss_pred cceehhhhcccCCCCccccchhHHHHHHHHHHHHHHHhhhh
Q 012295 250 SIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGC 290 (466)
Q Consensus 250 h~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~ 290 (466)
-.+.|++.|..|++ |+-.+....+..+...+...+|+
T Consensus 244 ~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~ 280 (484)
T PRK11375 244 AVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASV 280 (484)
T ss_pred HccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHH
Confidence 55899999999987 55555656566555554443343
No 56
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.51 E-value=4e-05 Score=76.83 Aligned_cols=231 Identities=10% Similarity=-0.013 Sum_probs=117.2
Q ss_pred hHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCchhhHHH-HHHHHHhhhHH
Q 012295 52 LAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGI-FVQESLYGAGI 130 (466)
Q Consensus 52 lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~-~~~~~~~g~~~ 130 (466)
+.+.....|...-.=..++.+..+...+.-|.|.......-.| -|.-.+..+ +|+++.++.+ .-+...++...
T Consensus 73 m~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGg-----Ly~waa~la-p~k~~~~~sw~~Gw~~~~g~~~ 146 (550)
T KOG1289|consen 73 MAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGG-----LYFWAAVLA-PPKYGPFASWVTGWLNYLGQAT 146 (550)
T ss_pred eeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCc-----HHHHHHHhc-CcchhhHHHHHHHHHHHHHHHh
Confidence 4444444444433333567777788888888886544332222 344333333 4554433333 23333333222
Q ss_pred HHHHH---hhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCC--CCCchhHHHHHHHHHHHHHHHHHHH
Q 012295 131 TYTFT---TANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIP--DFHNMEWLSVIAAIMSFAYSFIGFG 205 (466)
Q Consensus 131 ~y~i~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~--~l~~l~~~s~~~~~~~~~~~~i~~~ 205 (466)
..-.. .++.+...... .+ ......+.....+...+.+..+++. .-+.+++++.+++...+...++..+
T Consensus 147 ~~aSi~~S~A~~i~~~v~l--~n-----p~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I 219 (550)
T KOG1289|consen 147 GVASITYSLAQLILGAVSL--TN-----PNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMI 219 (550)
T ss_pred hchhhhHHHHHHHHHHHhh--cC-----CCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 22222222211 11 1111111222233333333332222 2467778888887777655444433
Q ss_pred HHHHHHHhhcccc-cc--cccCCCCcchh-HHHHHHHHHHHHHhhccccceehhhhcccCCCCccccchhHHHHHHHHHH
Q 012295 206 LGFAKVIENGRIK-GS--IAGVPTANLAD-KLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFIT 281 (466)
Q Consensus 206 ~~~~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~ 281 (466)
.......+..+.. ++ .....+.+.++ ..|.+..++-.-.+.+.|-.....+.+|-||++ ++.+|++..+..+.
T Consensus 220 ~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~ 296 (550)
T KOG1289|consen 220 TLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIG 296 (550)
T ss_pred HhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHH
Confidence 3222211110111 11 12222334444 456777788888999999999999999999997 89999999888888
Q ss_pred HHHHHhhhhhccccccc
Q 012295 282 TFFYLCCGCFGYAAFGN 298 (466)
Q Consensus 282 ~~~Y~~~g~~gy~~fg~ 298 (466)
+++=.++-+.-...-++
T Consensus 297 ~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 297 FILGWIIIIGIAYTIPD 313 (550)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 77655444444444443
No 57
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.30 E-value=0.0015 Score=65.31 Aligned_cols=227 Identities=14% Similarity=0.117 Sum_probs=126.1
Q ss_pred HHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCC
Q 012295 33 ICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDK 112 (466)
Q Consensus 33 ~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~ 112 (466)
|....+++.+-..|+.... .++.-+++..++-.++...-.-+.... .++.| .++.-+.|..||++
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~----G~~~G----l~~~v~sR~~FG~~ 71 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVI----GADTG----LSAMGSLKLSLGSK 71 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHh----hcccC----cCHHHHHHHHHccc
Confidence 4445555555555543211 344444444443333333333333332 22333 67889999999999
Q ss_pred chhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHHH
Q 012295 113 NQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIA 192 (466)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~~ 192 (466)
|..+..+...+...|-........++.+..+.+..... + +...+..+..++..+.+. ...+.++++..++
T Consensus 72 Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~----~-----~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~ 141 (386)
T TIGR02358 72 GSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE----E-----SPMLWILIVGILVTLWLL-SGPLAFVWLNNWS 141 (386)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----C-----chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999989999999999988642111 0 012333444444445554 3367777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHH-hhccccceehhhhcccCCCCccccchh
Q 012295 193 AIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIA-FAYPYSIILLEIQDTLKSPPPENKTMK 271 (466)
Q Consensus 193 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~h~~~~~i~~~m~~p~~~~~~~~ 271 (466)
........+...+ ....+.+.... ...+ .+ ..+ ..+++... +.-......++..|..|+| ++..
T Consensus 142 ~~~~~i~~~~~~~----~~~~~~~~~~~-~~~~--~~-~s~---~~~~~~~~~~~~swa~~~~DysRy~k~~----~~~~ 206 (386)
T TIGR02358 142 VWLLLIATLWLLV----VVFSKADLSEL-WNRA--GD-MSF---AVAVELVIAMPLSWLPLIADYTRFARNP----RHVF 206 (386)
T ss_pred HHHHHHHHHHHHH----HHHhccchhhh-cCCC--CC-ccH---HHHHHHHHHHHHHHHHHccchhhhcCCC----ccee
Confidence 6655532221111 11111111111 1111 11 111 12222111 1112334589999998877 7777
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccccc
Q 012295 272 MASMISIFITTFFYLCCGCFGYAAFGND 299 (466)
Q Consensus 272 ~~~~~a~~~~~~~Y~~~g~~gy~~fg~~ 299 (466)
+....+..+...+-..+|.....+.++.
T Consensus 207 ~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 207 LGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7788888888888888887766665543
No 58
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.23 E-value=0.00058 Score=64.36 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=96.2
Q ss_pred HHHHHHHHhhhhchhhhhh---HHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhC
Q 012295 34 CTALAHIITGVIGAGVLSL---AWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLG 110 (466)
Q Consensus 34 ~~~~~~l~~~~iG~GiL~l---P~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G 110 (466)
.+..+..+.+++|+|.=+= =.-|..-|+. |+...++.+++-..++..+.+..++. +..+|+|.-++.+|
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f-------~a~~y~~~~~~v~~ 77 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKF-------NATSYREILKYVSG 77 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHh-------cccchHHHHHHHhh
Confidence 4455667889999998763 3345567776 57777777777777777777765442 35799999999999
Q ss_pred CCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHH
Q 012295 111 DKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSV 190 (466)
Q Consensus 111 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~ 190 (466)
|+...+.|+.+.+..+++++.-+--.++.+.+-.+. +...-.++...++..+.++++.+.+-.+..
T Consensus 78 ~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--------------P~wiGali~i~~v~i~lfl~~vegi~tvn~ 143 (349)
T COG3949 78 PKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--------------PYWIGALIIILLVLILLFLGRVEGIITVNG 143 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--------------cHHHHHHHHHHHHHHHHHHhcccceeeehe
Confidence 999999999999999999998888777776665432 111222344444445556666666655544
Q ss_pred HHH
Q 012295 191 IAA 193 (466)
Q Consensus 191 ~~~ 193 (466)
+-+
T Consensus 144 iI~ 146 (349)
T COG3949 144 IIT 146 (349)
T ss_pred eHH
Confidence 433
No 59
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.18 E-value=0.0016 Score=64.90 Aligned_cols=206 Identities=16% Similarity=0.090 Sum_probs=114.4
Q ss_pred cHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcC
Q 012295 100 SFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQI 179 (466)
Q Consensus 100 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~ 179 (466)
+--.++|..||.+|.++..+++.+.+.|......+..++...+. . ..+..+++++.+++....+..
T Consensus 82 pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~------------~--~~~~~~~ili~g~l~~l~~if 147 (442)
T COG1457 82 PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG------------T--GLPVWAGILIIGVLMTLVTIF 147 (442)
T ss_pred ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC------------C--CCcHHHHHHHHHHHHHHHHHH
Confidence 34457789999999999999999999999998888888861111 0 123345666666666555543
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHH-Hhhccccceehhhhc
Q 012295 180 PDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDI-AFAYPYSIILLEIQD 258 (466)
Q Consensus 180 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~h~~~~~i~~ 258 (466)
. .+.+..++..+....+. ......+...+....... ...+.++... ++..+++.. .+.-..-+...+..|
T Consensus 148 G-~r~l~~l~~~a~~~~~~----lf~~l~~~~~~~~~~~~~-~~~~~~~~~~---~fl~a~slv~g~~~sw~~~~aDysR 218 (442)
T COG1457 148 G-YRALHKLERIAVPLLLL----LFLYLLALLFRSKGGLDA-LWVKGPTSPL---SFLSALSLVIGSFASWGPYAADYSR 218 (442)
T ss_pred h-HHHHHHHHHHHHHHHHH----HHHHHHHHHHhcccccce-eeccCCCcch---hHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 3 45555555555544442 222233333332211111 1111112222 222222222 222336678889999
Q ss_pred ccCCCCccccchhHHHHHHHHHHHHHHHhhhhhccccccccc-cccccccccccCchHHHHHHHHHHHHHHHhhcccc
Q 012295 259 TLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT-PGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIF 335 (466)
Q Consensus 259 ~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 335 (466)
.+|+|++ +|.-.....+......+-+..|.+...+-|+.. ..+....+. + +-..+.+...+....+--..
T Consensus 219 y~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G---~--~g~~~~lil~l~~~ttN~~n 289 (442)
T COG1457 219 YAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG---G--FGLPAILILVLGTVTTNANN 289 (442)
T ss_pred hcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc---c--HHHHHHHHHHHHHHhcCcHH
Confidence 9998843 355555666666666666777777777777665 333333332 2 34455555555555554333
No 60
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.04 E-value=0.00025 Score=71.54 Aligned_cols=148 Identities=10% Similarity=0.113 Sum_probs=87.3
Q ss_pred ccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHH
Q 012295 29 RTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKL 107 (466)
Q Consensus 29 ~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 107 (466)
|+.+++...+.+..+.+|++ +++.|....+.|+.. ....+............+.+-.++ .+..|..|.-++
T Consensus 6 r~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~-------~~~~T~~e~~~~ 77 (406)
T PF00474_consen 6 RSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR-------SGAVTIPEYLEK 77 (406)
T ss_dssp S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH-------TT--SHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc-------cchhhhhhhhhh
Confidence 55667778888888888774 888999888888863 333343344444444555554442 246899999999
Q ss_pred HhCCCc--hhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCch
Q 012295 108 YLGDKN--QKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 185 (466)
Q Consensus 108 ~~G~~~--~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l 185 (466)
-||++. +.+..+...+.........+...+..++.+++ ++....+++..++++......-++..
T Consensus 78 Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~iYt~~GGl~av 143 (406)
T PF00474_consen 78 RYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVIIYTFFGGLRAV 143 (406)
T ss_dssp HT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT-----
T ss_pred hcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHHHhhhhhhHhhh
Confidence 999988 66666656666666667777777777666653 22233445555566667777778887
Q ss_pred hHHHHHHHHHHHH
Q 012295 186 EWLSVIAAIMSFA 198 (466)
Q Consensus 186 ~~~s~~~~~~~~~ 198 (466)
.+...+-.+..+.
T Consensus 144 ~~td~iQ~~i~~~ 156 (406)
T PF00474_consen 144 AWTDFIQGVIMII 156 (406)
T ss_dssp -SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 7777666655443
No 61
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.04 E-value=0.015 Score=60.13 Aligned_cols=150 Identities=11% Similarity=0.053 Sum_probs=87.2
Q ss_pred cccccHHHHHHHHHhhhhch-hhhhhHHHHHhhChhhHHHHH--HHHHH-HHHHHHHHHHhhccCCCCCcCccccccHHH
Q 012295 28 ERTGTICTALAHIITGVIGA-GVLSLAWSMAQLGWIAGPLCM--IAFAS-VTIVSSSLLCDCYRFPDPEVGPNRIRSFTQ 103 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~i~l--~~~~~-~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~ 103 (466)
.|+.+++...+.+..+.+|+ ..++.|....+-|+..-.... ...+. ...+-+..+.+..++ .+..|..|
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-------~~~~T~~e 112 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK-------YNAVTLND 112 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCccHHH
Confidence 56666777777787777766 577888766666764211111 11111 111122222222222 23689999
Q ss_pred HHHHHhCCCc-hhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCC
Q 012295 104 AVKLYLGDKN-QKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDF 182 (466)
Q Consensus 104 ~~~~~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l 182 (466)
..++-||++. +.+..+...+..+....+.+...+..++.+++ ++....+++..+++.......-+
T Consensus 113 ~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GGl 178 (483)
T PRK09442 113 MLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVALYTAFGGF 178 (483)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhccH
Confidence 9999998664 55555555555555666666667777766653 12223345555666677777778
Q ss_pred CchhHHHHHHHHHHHH
Q 012295 183 HNMEWLSVIAAIMSFA 198 (466)
Q Consensus 183 ~~l~~~s~~~~~~~~~ 198 (466)
+...+...+-.+..+.
T Consensus 179 ~av~~TD~iQ~~i~~~ 194 (483)
T PRK09442 179 RAVVLTDALQGIVMLV 194 (483)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777776655443
No 62
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.02 E-value=0.0027 Score=64.09 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=94.7
Q ss_pred ccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHH
Q 012295 29 RTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKL 107 (466)
Q Consensus 29 ~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 107 (466)
|+.+++...+.+..+.+|++ .++.|...-+.|+.. ....+..........++..+..++ .+..|..|..++
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~T~~e~l~~ 74 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVPIFIN-------NGAYTMPEYLEK 74 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-------cCCCchhHHHHH
Confidence 45566677777777777764 788888777778642 222222233333344455443332 236899999999
Q ss_pred HhCCC-chhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchh
Q 012295 108 YLGDK-NQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNME 186 (466)
Q Consensus 108 ~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~ 186 (466)
-||++ .+.+..+...+..+......+...+..++.+.+. +....+++.++++.......-++...
T Consensus 75 Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi--------------~~~~~~ii~~~i~~~Yt~~GG~~av~ 140 (407)
T TIGR00813 75 RFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL--------------DLYLSLLLLGAITILYTVFGGLKAVV 140 (407)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------------hHHHHHHHHHHHHHHHHHHcchHHHH
Confidence 99984 6677677777777788888888888887776542 11233345555555666777788878
Q ss_pred HHHHHHHHHHHH
Q 012295 187 WLSVIAAIMSFA 198 (466)
Q Consensus 187 ~~s~~~~~~~~~ 198 (466)
+...+-.+.++.
T Consensus 141 ~Td~iQ~~i~~~ 152 (407)
T TIGR00813 141 WTDTIQAVIMIL 152 (407)
T ss_pred HHHHHHHHHHHH
Confidence 777777655443
No 63
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.02 E-value=0.011 Score=60.80 Aligned_cols=149 Identities=12% Similarity=0.070 Sum_probs=92.9
Q ss_pred cccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHH----hhccCCCCCcCccccccHH
Q 012295 28 ERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLC----DCYRFPDPEVGPNRIRSFT 102 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~----~~~~~~~~~~g~~~~~~y~ 102 (466)
.|+.+++.....+..+.+|++ .++.|....+.|+........ ...........+. +..++ .+..|..
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~T~~ 110 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAIISRK-------YNAITIN 110 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-------cCCccHH
Confidence 566778888888888888886 778888777777632111110 0011111111222 22222 2368999
Q ss_pred HHHHHHhCCCc-hhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCC
Q 012295 103 QAVKLYLGDKN-QKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPD 181 (466)
Q Consensus 103 ~~~~~~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~ 181 (466)
|.-++-||++. +++..+...+..++...+.+...+..++.+++. +....+++.++++.......-
T Consensus 111 e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi--------------~~~~~iii~~~iv~iYt~~GG 176 (471)
T TIGR02119 111 DVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL--------------SYLTALFIFSSSVLIYTTFGG 176 (471)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhhh
Confidence 99999999654 677777777777777777777777777776541 222334455555666667777
Q ss_pred CCchhHHHHHHHHHHHH
Q 012295 182 FHNMEWLSVIAAIMSFA 198 (466)
Q Consensus 182 l~~l~~~s~~~~~~~~~ 198 (466)
++...+...+-....+.
T Consensus 177 ~~av~~td~iQ~~v~~~ 193 (471)
T TIGR02119 177 FRAVALTDAIQGIVMFT 193 (471)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888877777655443
No 64
>PRK12488 acetate permease; Provisional
Probab=98.00 E-value=0.023 Score=59.56 Aligned_cols=148 Identities=13% Similarity=0.087 Sum_probs=94.8
Q ss_pred cccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHH-HHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 28 ERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIV-SSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~-t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
.|+.+++...+.+..+.++++ .++.|....+.|+.. ....+. ..+.+. ...++.+-.++ ....|..|.-
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~~~~g-~~~g~~~~~~~~a~~lr~-------~g~~T~~d~l 136 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LLYALG-VLAGWPIILFLIAERLRN-------LGKYTFADVV 136 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HHHHHH-HHHHHHHHHHHHHHHHHH-------CCCcchHHHH
Confidence 566778888888888888775 788998777788753 221111 111211 12334433332 1247899988
Q ss_pred HHHhC-CCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCc
Q 012295 106 KLYLG-DKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHN 184 (466)
Q Consensus 106 ~~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~ 184 (466)
++=|| |+.|.+..+...+..+......+...+..++.+++. ++..-+++.++++.......-++.
T Consensus 137 ~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi--------------~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T PRK12488 137 SYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI--------------SYLYAVVIVGALMVLYVTFGGMLA 202 (549)
T ss_pred HHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHhccchhH
Confidence 88777 668888888877777777777777777777766531 122334555566666667777888
Q ss_pred hhHHHHHHHHHHHH
Q 012295 185 MEWLSVIAAIMSFA 198 (466)
Q Consensus 185 l~~~s~~~~~~~~~ 198 (466)
..+...+-.+..+.
T Consensus 203 v~~td~iQ~~im~~ 216 (549)
T PRK12488 203 TTWVQIIKAVLLLS 216 (549)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777655543
No 65
>PRK11017 codB cytosine permease; Provisional
Probab=97.82 E-value=0.0084 Score=60.35 Aligned_cols=173 Identities=17% Similarity=0.083 Sum_probs=91.6
Q ss_pred ccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhc
Q 012295 99 RSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQ 178 (466)
Q Consensus 99 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~ 178 (466)
.++.-+.|..||.+|..+..+...+...+-........++.+++..+. +...+.+++.++..+.+.
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~--------------~~~~~~~i~~~l~~~~~~ 136 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL--------------DINLLIVLSGLLMTVTAY 136 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999888888877776666666655554321 011234455555555554
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhh-ccccceehhhh
Q 012295 179 IPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFA-YPYSIILLEIQ 257 (466)
Q Consensus 179 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~h~~~~~i~ 257 (466)
.+ .+.++++...+........+.+ .++-..+.+......+..+ ... ..+..++...+=. -..-.+.++..
T Consensus 137 ~G-~~~i~~~~~~~~p~~~~~~~~~---~~~~~~~~~g~~~~~~~~~--~~~---~~~~~a~~~~~g~~~~~~~~~~Dys 207 (404)
T PRK11017 137 FG-ISALTILSRIAVPAIALLGGYS---VWLAVNDVGGLDGLKAIVP--AEP---LDFSAALTLVVGSFISGGTLTADFV 207 (404)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHhccCchhhhhcCCC--CCc---ccHHHHHHHHHHHHHHhHhcCCChH
Confidence 33 4555555555544433211111 1111111111110001111 111 1222333322222 23567899999
Q ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHhhhhhccccccc
Q 012295 258 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGN 298 (466)
Q Consensus 258 ~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~ 298 (466)
|..|+| ++.-.....+..+...+-..+|...-...|+
T Consensus 208 Ry~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 208 RFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred hhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 998876 5444555566656555555556554445544
No 66
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.77 E-value=0.036 Score=57.26 Aligned_cols=149 Identities=7% Similarity=-0.038 Sum_probs=95.8
Q ss_pred cccccHHHHHHHHHhhhhc-hhhhhhHHHHHhhChhhHHHHHH---HHHHHHHHHHHHHHhhccCCCCCcCccccccHHH
Q 012295 28 ERTGTICTALAHIITGVIG-AGVLSLAWSMAQLGWIAGPLCMI---AFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQ 103 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG-~GiL~lP~~f~~~G~~~g~i~l~---~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~ 103 (466)
.|+.+.+-......-+.++ .-.+++|...-+.|+....+... ...+...+-...+.+.. + + ++..|..|
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~---~---~~~~T~~d 109 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-K---A---RGATTIPD 109 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---c---cCCccHHH
Confidence 4444544556666666666 67999999988888865444433 22223333333333322 1 1 34789999
Q ss_pred HHHHHhC-CCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCC
Q 012295 104 AVKLYLG-DKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDF 182 (466)
Q Consensus 104 ~~~~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l 182 (466)
.-++-|| ++.|.+..+...+..+..+...+...++.++..++ . ++..-+++.+.++..-....-+
T Consensus 110 ~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i-------------~~~~~~~~~~~~v~~Yt~~gG~ 175 (493)
T COG0591 110 FLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-I-------------SYVTGILIGALIVALYTFLGGL 175 (493)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-C-------------CHHHHHHHHHHHHHHHHHHcCh
Confidence 9999999 88899999999999999999999998888855554 1 1112233445555566666667
Q ss_pred CchhHHHHHHHHHHH
Q 012295 183 HNMEWLSVIAAIMSF 197 (466)
Q Consensus 183 ~~l~~~s~~~~~~~~ 197 (466)
+...+...+-.....
T Consensus 176 ~av~~Td~iqg~im~ 190 (493)
T COG0591 176 RAVVWTDFIQGLIML 190 (493)
T ss_pred hHHHHHHHHHHHHHH
Confidence 777776655554433
No 67
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.71 E-value=0.07 Score=53.72 Aligned_cols=201 Identities=11% Similarity=0.158 Sum_probs=103.6
Q ss_pred ccccHHHHHHHHhCCCchhhHHH---HHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCC--C-CcccCCcceehhhH
Q 012295 97 RIRSFTQAVKLYLGDKNQKVCGI---FVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHN--A-PCAYGDTKHMLLFG 170 (466)
Q Consensus 97 ~~~~y~~~~~~~~G~~~~~~~~~---~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~~~i~~ 170 (466)
...+|....|..||-+|..+-.+ ...+-.||.- .-..+..+..++.....+.+..+ . ....+...++..+.
T Consensus 101 ~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvq---ty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~i 177 (497)
T COG1953 101 YGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQ---TYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFI 177 (497)
T ss_pred cCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHH
Confidence 34789999999999887644333 3333334432 24455555555554332211111 1 11122222221111
Q ss_pred H-HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccccc-cCCCCcchhHHHHHHHHHHHHHhh
Q 012295 171 A-VQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRI--KGSIA-GVPTANLADKLWLAFQALGDIAFA 246 (466)
Q Consensus 171 i-~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~fa 246 (466)
. ++-.++..+-.++++++-..+..++.. ++..+.++-..+.+.. -++.+ +. .+.....|.++.++...+--
T Consensus 178 fW~l~~l~~~~g~~~Ir~~~~~a~p~~~~---~~~gl~Iw~~~~a~g~~~~~~~p~~~--~~~~~~~w~~~~~~~~~v~~ 252 (497)
T COG1953 178 FWVLQLLVLFKGMESIRKFETWAGPLVYI---AMLGLAIWALVKAGGSSILGELPAGT--VSGSNSSWAFLAGIAAWVGF 252 (497)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhchHHHH---HHHHHHHHHHHhcCCcCccccCCCCC--CCcchhHHHHHHHHHHHHHH
Confidence 1 112334556688888887777766664 3333444544443321 11111 11 22233344444444433333
Q ss_pred cc-ccceehhhhcccCCCCccccchhHHHHHH----HHHHHHHHHhhhhhcccccccc--cccccccccc
Q 012295 247 YP-YSIILLEIQDTLKSPPPENKTMKMASMIS----IFITTFFYLCCGCFGYAAFGND--TPGNLLTGFG 309 (466)
Q Consensus 247 f~-~h~~~~~i~~~m~~p~~~~~~~~~~~~~a----~~~~~~~Y~~~g~~gy~~fg~~--~~~~il~~~~ 309 (466)
|. ..-|+|+..|.-|+|+ .-...-..+ +.+..++=...+..++..||+. .+.++++++.
T Consensus 253 ~Atl~lN~~DFsRfa~s~~----~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~ 318 (497)
T COG1953 253 WATLALNIPDFTRFAKSQK----AQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFL 318 (497)
T ss_pred HHHHhcCCchhhcccCChh----hhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhc
Confidence 33 5679999999999873 333323333 3333444445556678899999 5668888885
No 68
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.66 E-value=0.038 Score=54.71 Aligned_cols=222 Identities=12% Similarity=0.196 Sum_probs=106.3
Q ss_pred HHHhhhhchhhhhhHHHHH-hhC--hhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCchh
Q 012295 39 HIITGVIGAGVLSLAWSMA-QLG--WIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQK 115 (466)
Q Consensus 39 ~l~~~~iG~GiL~lP~~f~-~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~ 115 (466)
.++.-.+|+|.|-.|-... ++| |..+.+.+++.++..-..+..-. ++.| .+|.++.++. ||+...
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av-------~~~g----G~~~~l~~~~-g~~f~~ 70 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIAL-------ALVG----GGYDSLSARI-GKVFGI 70 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhee-------eecC----CCHHHHHHHh-ChHHHH
Confidence 4566779999999987654 454 56667777777766655554411 1111 4788887766 677666
Q ss_pred hHHHHHHHHH---h----hhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHH
Q 012295 116 VCGIFVQESL---Y----GAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL 188 (466)
Q Consensus 116 ~~~~~~~~~~---~----g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~ 188 (466)
+..++.++.. + ...++|-.. +..+++. + . ......++.++.+.+++.=+++.-+..
T Consensus 71 lf~~~~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~-----~---~-----~~~~l~i~siiff~i~~~l~~~~~k~~ 133 (378)
T TIGR00796 71 LFTVILYLTIGPLFAIPRTATVSFEMG----IAPLLHS-----P---T-----SLLALFIFSLIFFAVVLLLSLNPSKLI 133 (378)
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHH----HHhccCc-----c---c-----chHHHHHHHHHHHHHHHHHHcCcccHH
Confidence 6555444322 1 223334332 2222211 0 0 012223444444444332333444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccccCCCCcch-hHHH---HHHHHHHHHHhhccccceehhhhc-ccCC
Q 012295 189 SVIAAIMSFAYSFIGFGLGFAKVIENG-RIKGSIAGVPTANLA-DKLW---LAFQALGDIAFAYPYSIILLEIQD-TLKS 262 (466)
Q Consensus 189 s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~faf~~h~~~~~i~~-~m~~ 262 (466)
..++-+++-...+....+.+....+.. +.........+..+. ..+. +.+-+++.+.|+. ..+-.+.+ |+||
T Consensus 134 ~~iGk~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~---iiv~~i~~~g~~~ 210 (378)
T TIGR00796 134 DRVGKFLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGI---IVVNAIRSRGVTK 210 (378)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCCC
Confidence 666655555433333333333333211 110000111100111 1122 3344555555554 35555566 8988
Q ss_pred CCccccchhHHHHHHH---HHHHHHHHhhhhhcccc
Q 012295 263 PPPENKTMKMASMISI---FITTFFYLCCGCFGYAA 295 (466)
Q Consensus 263 p~~~~~~~~~~~~~a~---~~~~~~Y~~~g~~gy~~ 295 (466)
|+ +..++++..+. .....+|...+..|...
T Consensus 211 ~~---~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~ 243 (378)
T TIGR00796 211 PK---KITKYTIKAGLIAAVLLAFIYLSLFYLGATS 243 (378)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 85 55555555554 34455566666666544
No 69
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.071 Score=53.26 Aligned_cols=54 Identities=22% Similarity=0.105 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhcchhhhhhhhHHHHHHhcc
Q 012295 375 ILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKI 428 (466)
Q Consensus 375 ~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~Ga~~~~~~~~ilP~~~~~~~~~~ 428 (466)
.+|...|.+..+++.++.+.+.+.+.++.+.+.+.+..+-+.+++++.+..+|+
T Consensus 325 ~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 325 RRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 567788888888877777777799999999999988888888877777776665
No 70
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.45 E-value=0.11 Score=53.81 Aligned_cols=152 Identities=8% Similarity=0.070 Sum_probs=82.5
Q ss_pred cccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCC-CcCccccccHHHHH
Q 012295 28 ERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDP-EVGPNRIRSFTQAV 105 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~-~~g~~~~~~y~~~~ 105 (466)
.|+.+++...+.+..+.+++. .++.|....+.|+.. ........+........+.+-.++..+ + ++..|..|.-
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~---~~~~T~~e~l 110 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAA---HNSITLPDFF 110 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhh---cCCccHHHHH
Confidence 556667777777777776654 677887666678753 221222222223333444432221111 1 2367899999
Q ss_pred HHHhCCCchhh---HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCC
Q 012295 106 KLYLGDKNQKV---CGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDF 182 (466)
Q Consensus 106 ~~~~G~~~~~~---~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l 182 (466)
++=||++.+.+ ..+...+.........+...+..++.+++ .+....+++.++++..-....-+
T Consensus 111 ~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGl 176 (487)
T TIGR02121 111 ENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALIIVIYTFFGGF 176 (487)
T ss_pred HHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHHHHHHHhhhH
Confidence 99999765443 33333333333344444555555555543 11123334555555666666777
Q ss_pred CchhHHHHHHHHHHH
Q 012295 183 HNMEWLSVIAAIMSF 197 (466)
Q Consensus 183 ~~l~~~s~~~~~~~~ 197 (466)
+...+...+-.+..+
T Consensus 177 ~av~~TD~iQ~~i~~ 191 (487)
T TIGR02121 177 LAVSWTDFVQGLLMF 191 (487)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666655444
No 71
>PRK09395 actP acetate permease; Provisional
Probab=97.39 E-value=0.25 Score=51.96 Aligned_cols=148 Identities=12% Similarity=0.065 Sum_probs=89.2
Q ss_pred cccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHH
Q 012295 28 ERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVK 106 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 106 (466)
.|+.+++...+.+..+.++++ .++.|....+.|+.. ....+...+.......++.+-.++ ....|+.|.-+
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~-------~g~~T~~d~l~ 139 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRN-------LGKYTFADVAS 139 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhh-------CCCccHHHHHH
Confidence 556667777777877877764 788998777778743 222211111112223334443332 12589999998
Q ss_pred HHhC-CCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCch
Q 012295 107 LYLG-DKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 185 (466)
Q Consensus 107 ~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l 185 (466)
.=|| |+.|.+..+...+..+....+.+...+..++.+++ ++....+++.++++.......-++..
T Consensus 140 ~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~av 205 (551)
T PRK09395 140 YRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGMLAT 205 (551)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 8888 45777777776666666666666666766666543 22223345555566666676777777
Q ss_pred hHHHHHHHHHHH
Q 012295 186 EWLSVIAAIMSF 197 (466)
Q Consensus 186 ~~~s~~~~~~~~ 197 (466)
.+...+-.+.++
T Consensus 206 ~~TD~iQ~iim~ 217 (551)
T PRK09395 206 TWVQIIKAVLLL 217 (551)
T ss_pred HHHHHHHHHHHH
Confidence 777666655444
No 72
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.34 E-value=0.28 Score=51.55 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=87.2
Q ss_pred cccccHHHHHHHHHhhhhch-hhhhhHHHHHhhChhhHHHHHHHHHHHHH-HHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 28 ERTGTICTALAHIITGVIGA-GVLSLAWSMAQLGWIAGPLCMIAFASVTI-VSSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
.|+.+++...+.+..+.+++ ..++.|....+.|+-. ....+. ..+.. ....++.+-.++ ....|..|..
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~-~~~~~g-~~~~~~i~~~~~a~~lrr-------~g~~T~~d~l 136 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDG-LIYSLG-FLVGWPIILFLIAERLRN-------LGRYTFADVA 136 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHHHH-HHHHHHHHHHHHHHHHHH-------cCCccHHHHH
Confidence 45555666666777776665 6889998777778642 222211 11111 223334443322 1248999988
Q ss_pred HHHhC-CCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCc
Q 012295 106 KLYLG-DKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHN 184 (466)
Q Consensus 106 ~~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~ 184 (466)
++=|| |..|.+..+...+..+......+...+..++.+++. ++..-+++..+++..-....-++.
T Consensus 137 ~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi--------------~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T TIGR02711 137 SYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL--------------NYHVAVVLVGILMVMYVLFGGMLA 202 (549)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhhhhHH
Confidence 88776 456777776666666666666667777766666531 112334555555566666677777
Q ss_pred hhHHHHHHHHHHH
Q 012295 185 MEWLSVIAAIMSF 197 (466)
Q Consensus 185 l~~~s~~~~~~~~ 197 (466)
..+...+-.+..+
T Consensus 203 v~~td~iQ~~im~ 215 (549)
T TIGR02711 203 TTWVQIIKAVLLL 215 (549)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665544
No 73
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.31 E-value=0.0018 Score=66.10 Aligned_cols=248 Identities=15% Similarity=0.078 Sum_probs=112.6
Q ss_pred ccccccHHHHHHHHHhhhhchhhhhhHHHHHh--hChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHH
Q 012295 27 FERTGTICTALAHIITGVIGAGVLSLAWSMAQ--LGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQA 104 (466)
Q Consensus 27 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~--~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~ 104 (466)
++|+.+.++-...-....+...-+.+-..... .++.-+++..++-.++...-.-+..... +|.| .++.-+
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G----~r~G----l~~~v~ 76 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIG----PRTG----LPTMVL 76 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH----HCC-------HHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccc----cccC----CCchhc
Confidence 34454555554444444444433333332222 2333344444444443333333333332 2333 678889
Q ss_pred HHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCC-CCcccCCccee--hhhHHHHHHhhcCCC
Q 012295 105 VKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHN-APCAYGDTKHM--LLFGAVQVVMSQIPD 181 (466)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~--~i~~i~~~pl~~~~~ 181 (466)
.|..||.+|..+..++..+...|-........++.+..+.+....+..... .........++ ++..++..+.. ...
T Consensus 77 sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~g 155 (440)
T PF02133_consen 77 SRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFA-IYG 155 (440)
T ss_dssp TTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHH-CTH
T ss_pred chhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHH-hcC
Confidence 999999999999999999999999999999999999998875322100000 00001111111 11222222222 233
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCC-CCcchhHHHHHHHHHHHHHhhc-cccceehhhhcc
Q 012295 182 FHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVP-TANLADKLWLAFQALGDIAFAY-PYSIILLEIQDT 259 (466)
Q Consensus 182 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf-~~h~~~~~i~~~ 259 (466)
++.++.+..+....... +.+...++...+.+ . +.....+ ...+.. .+..++...+-.+ ..-.+.++..|.
T Consensus 156 ~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~DysRy 227 (440)
T PF02133_consen 156 MKALRRLAVIAAPILLV---VFIGMLIWALSKAG-G-GPLLSAPASPSPSG---SFLAAIALVIGSWISWAPNASDYSRY 227 (440)
T ss_dssp HHHHHHHHHCCHHHHHH---HHHHHHHHHHHHCT---HHHCCS--S----S----HHHHHHHHHCCCHHHHCCCHHHHTT
T ss_pred HHHHHhHHhhhhHHHHh---hhhheeEEEeecCC-c-chhhhCcccchhHH---HHHHHHHHHHhhhhhhhhccccHHhh
Confidence 55555555555443332 11122222222211 1 1111111 011011 1223332222222 244567799999
Q ss_pred cCCCCccccchhHHHHHHHHHHHHHHHhhhhhcccc
Q 012295 260 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAA 295 (466)
Q Consensus 260 m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 295 (466)
+|++ ++-.+....+..........++.+|...
T Consensus 228 ~~~~----~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 228 AKSD----TSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp C--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC----CCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 9977 6666777777767666666666665543
No 74
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.30 E-value=0.31 Score=51.26 Aligned_cols=149 Identities=11% Similarity=0.009 Sum_probs=90.0
Q ss_pred ccccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 27 FERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 27 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
-.|+.+++...+.+..+.++++ .++.|....+.|+..-... ............++.+-.++. +..|..|.-
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~p~~rr~-------~~~T~~e~l 101 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL-MGWTGGYVLLALLLAPYLRKF-------GKYTVPDFI 101 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHHC-------CCccHHHHH
Confidence 3566778888888888888664 8888887666776421111 111111122334555544332 357888888
Q ss_pred HHHhCCC-chhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCc
Q 012295 106 KLYLGDK-NQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHN 184 (466)
Q Consensus 106 ~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~ 184 (466)
++=||++ .+.+..+...+..+......+...+..++.+++. +...-+++.++++.......-++.
T Consensus 102 ~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi--------------~~~~~iii~~~i~~iYt~~GG~~a 167 (552)
T TIGR03648 102 GDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV--------------DFETGVFIGMAIVFFYAVLGGMKG 167 (552)
T ss_pred HHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhhhHHH
Confidence 8888855 5777776666666666666666667666666531 112334455555666667677888
Q ss_pred hhHHHHHHHHHHH
Q 012295 185 MEWLSVIAAIMSF 197 (466)
Q Consensus 185 l~~~s~~~~~~~~ 197 (466)
..+.-.+-.+..+
T Consensus 168 V~~TD~iQ~iim~ 180 (552)
T TIGR03648 168 VTWTQVAQYIVLI 180 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666654433
No 75
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.24 E-value=0.1 Score=52.29 Aligned_cols=88 Identities=14% Similarity=0.032 Sum_probs=56.2
Q ss_pred ccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccH-----H
Q 012295 29 RTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSF-----T 102 (466)
Q Consensus 29 ~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y-----~ 102 (466)
.+.|.+++.+..+.+.+|+| |+++|-+.+ .|-..++.++.+.+++..-+.+.-.....+.+++.+ ..+| .
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~-~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~---~g~~~GGP~y 120 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIA-IGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDA---DGVFRGGPMY 120 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC---CCCEecChHH
Confidence 34688999999999999998 999999965 454777777776666655444433332222111111 1224 6
Q ss_pred HHHHHHhCCCchhhHHHH
Q 012295 103 QAVKLYLGDKNQKVCGIF 120 (466)
Q Consensus 103 ~~~~~~~G~~~~~~~~~~ 120 (466)
.+-+...|||...+..+.
T Consensus 121 yi~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 121 YIKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHHhCccHHHHHHHHH
Confidence 776777777655555554
No 76
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.20 E-value=0.33 Score=50.41 Aligned_cols=153 Identities=9% Similarity=0.022 Sum_probs=84.5
Q ss_pred ccccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHH-HHHHHHHHhhccCCC-CCcCccccccHHH
Q 012295 27 FERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVT-IVSSSLLCDCYRFPD-PEVGPNRIRSFTQ 103 (466)
Q Consensus 27 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~-~~~g~~~~~~y~~ 103 (466)
-.|+.+++...+.+..+.+++. .++.|...-+.|+.. . ...+...+. .....++.+-.+... .+ .+..|..|
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~---~~~~T~~e 112 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTEYN---NNALTLPD 112 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCceeHHH
Confidence 3566777777777877777775 778898877788653 1 111111122 112222221111100 01 23578999
Q ss_pred HHHHHhCCCchh---hHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCC
Q 012295 104 AVKLYLGDKNQK---VCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIP 180 (466)
Q Consensus 104 ~~~~~~G~~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~ 180 (466)
.-++=||++.+. +..+...+.....+...+...+..++.+++ ++....+++.+++++......
T Consensus 113 ~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~G 178 (502)
T PRK15419 113 YFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATILYTFIG 178 (502)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhh
Confidence 999999876544 334444444444444444555555555543 222233455566666677777
Q ss_pred CCCchhHHHHHHHHHHHH
Q 012295 181 DFHNMEWLSVIAAIMSFA 198 (466)
Q Consensus 181 ~l~~l~~~s~~~~~~~~~ 198 (466)
-++...+.-.+-.+.++.
T Consensus 179 Gl~aV~~TD~iQ~~imi~ 196 (502)
T PRK15419 179 GFLAVSWTDTVQASLMIF 196 (502)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 788888877777655443
No 77
>PRK00701 manganese transport protein MntH; Reviewed
Probab=96.93 E-value=0.58 Score=47.57 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=32.5
Q ss_pred ccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHH
Q 012295 99 RSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQ 144 (466)
Q Consensus 99 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 144 (466)
++..|..++-+||+..++..+...+...+...+-..-.+.-++.++
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999988877666666666666665555555554443
No 78
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.16 Score=53.10 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=68.0
Q ss_pred ccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHh
Q 012295 31 GTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYL 109 (466)
Q Consensus 31 ~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~ 109 (466)
+++.....=.+-.+.|.= .+=+-+....+|..-|.++..++++.+..|+.-+...+..-.-..| .+|.-+ .+.+
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaG----GsYfmI-SRsL 189 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAG----GSYFMI-SRSL 189 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC----CeeEEE-eccc
Confidence 344444444455555553 3346788888999999999988888888888877765432122222 456544 4556
Q ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhhhHH
Q 012295 110 GDKNQKVCGIFVQESLYGAGITYTFTTANCLR 141 (466)
Q Consensus 110 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 141 (466)
||-++..+.++..+-.-.....|++-.-+.+-
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L 221 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIFL 221 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHHH
Confidence 88888888777776666666667666555543
No 79
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.83 E-value=0.033 Score=57.44 Aligned_cols=229 Identities=10% Similarity=0.029 Sum_probs=116.2
Q ss_pred hhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCchhhHHHHHHHHHhhhH
Q 012295 50 LSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAG 129 (466)
Q Consensus 50 L~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~ 129 (466)
|=+++...|+|.+-.+..+++...+...|..-+......-.-+.| .-|.-+ .+.+|+-.+.-+..+.++.+...|
T Consensus 88 LR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GG----GaYymI-SRsLGpEfGGSIGllFf~anV~~~ 162 (945)
T KOG1288|consen 88 LRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGG----GAYYMI-SRSLGPEFGGSIGLLFFVANVFNC 162 (945)
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecC----ceEEEE-EcccCcccCCeeeehhhHHHHhcc
Confidence 446888889998887777777777777776666654322122222 234333 455577666666666667777777
Q ss_pred HHHHHHhhhhHHHHHhhhcccCCC-CCCCcccCCcceehhhHHHHH----HhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 012295 130 ITYTFTTANCLRAIQKSNCYHREG-HNAPCAYGDTKHMLLFGAVQV----VMSQIPDFHNMEWLSVIAAIMSFAYSFIGF 204 (466)
Q Consensus 130 ~~y~i~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~----pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~ 204 (466)
..++.-+.+-+-..++. ..++ +.........+|-.+.+.++. .+|++.+- -.+..|.+-.+.+....+.+.
T Consensus 163 am~isG~vE~il~nfG~---~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsa-lfAkas~i~f~~is~s~~si~ 238 (945)
T KOG1288|consen 163 AMNISGFVEPILDNFGK---EAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSA-LFAKASNILFVVISVSLFSIP 238 (945)
T ss_pred hhhhhhhhHHHHHhcCc---cccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHH-HHHhhhhhhhhHHHHHHhhhh
Confidence 76777666655544431 1111 111122344555555444433 34443311 111222222211111111000
Q ss_pred HHHHHHHHhhcc--cccc-----------cccCC--------------CCcchhHHHHHHHHHHHHHhhccccceehhhh
Q 012295 205 GLGFAKVIENGR--IKGS-----------IAGVP--------------TANLADKLWLAFQALGDIAFAYPYSIILLEIQ 257 (466)
Q Consensus 205 ~~~~~~~~~~~~--~~~~-----------~~~~~--------------~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~ 257 (466)
+..++....+.+ ..+. .++.. +.++ .+.-++-..++++.-+=.|...=-...
T Consensus 239 iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~-~~~~~F~~~FgV~F~g~tGimAGAnMS 317 (945)
T KOG1288|consen 239 ISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTG-GGYEDFASTFGVFFPGTTGIMAGANMS 317 (945)
T ss_pred heeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccC-CCceehhhhheeeeccchhhhcCCCcC
Confidence 000110000111 0000 00100 0000 111134455666555555555666778
Q ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHhhhhh
Q 012295 258 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCF 291 (466)
Q Consensus 258 ~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~ 291 (466)
.|+|+|+ |..++....+.+.++++|.++.++
T Consensus 318 gELk~PS---kSIP~GTl~ava~Tf~~Yvl~~fl 348 (945)
T KOG1288|consen 318 GELKAPS---KSIPKGTLSAVAFTFFVYVLVIFL 348 (945)
T ss_pred ccccCcc---ccCCccchHHHHHHHHHHHHHHHH
Confidence 8999998 899999999999999999987665
No 80
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.71 E-value=0.091 Score=50.94 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=87.1
Q ss_pred CCCCccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHH
Q 012295 23 SGKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFT 102 (466)
Q Consensus 23 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~ 102 (466)
.|+.+.-+.+.+..+.+=+.++-|+|.+-=|..-.+-||+++.+++++-+++.--...+..-....+ ++-++.+
T Consensus 44 ~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR------~~G~Si~ 117 (376)
T PF02554_consen 44 NDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVR------HKGKSIG 117 (376)
T ss_pred CCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhc------CCCccHH
Confidence 3444444555667788889999999999989988999999999998777766666555555432221 1248999
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 012295 103 QAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRA 142 (466)
Q Consensus 103 ~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 142 (466)
|++++..||++|.+..+..++.+.....++.....+.+..
T Consensus 118 ~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 118 EIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998888888777766665533
No 81
>PRK10484 putative transporter; Provisional
Probab=96.39 E-value=1.6 Score=45.66 Aligned_cols=156 Identities=10% Similarity=0.068 Sum_probs=79.8
Q ss_pred ccccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 27 FERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 27 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
-.|+.+++-..+.+..+.++++ .++.|...-+-|+.. .......+........++.+-.++ .+..|..|.-
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~p~~~r-------~~~~T~~e~l 107 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSV-MAWEVTAAIALIILALIFLPRYLK-------SGITTIPDFL 107 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHHh-------cCCccHHHHH
Confidence 3666777777778877777665 778888766677643 111111111122233334432322 2367999999
Q ss_pred HHHhCCCchhhHHHHHHHHHhhhHHHHH-HHhhhhHHHHHhhhcccCCCCCCCcccCCccee----hhhHHHHHHhhcCC
Q 012295 106 KLYLGDKNQKVCGIFVQESLYGAGITYT-FTTANCLRAIQKSNCYHREGHNAPCAYGDTKHM----LLFGAVQVVMSQIP 180 (466)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~-i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~i~~~pl~~~~ 180 (466)
++-||++.+.+......+......+... ...+..+.+++... .....+...-+ ++.+++........
T Consensus 108 ~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~--------~~~gi~~~~~~~~~~~~~~~i~~~Yt~~G 179 (523)
T PRK10484 108 EERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVS--------ELLGISYGAAIWLLVWLIGIIGAIYAVFG 179 (523)
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--------hhcCCcHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999998887766654443333222222 22233333332110 00011111111 11233334555667
Q ss_pred CCCchhHHHHHHHHHHHH
Q 012295 181 DFHNMEWLSVIAAIMSFA 198 (466)
Q Consensus 181 ~l~~l~~~s~~~~~~~~~ 198 (466)
-++...+.-.+..+..+.
T Consensus 180 Gl~aV~~TD~iQ~vim~i 197 (523)
T PRK10484 180 GLKAVAVSDTINGIGLLI 197 (523)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 777777777776655443
No 82
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=96.27 E-value=0.79 Score=45.83 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=46.5
Q ss_pred CCccccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHH---HHHHHHhhccC
Q 012295 25 KPFERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIV---SSSLLCDCYRF 88 (466)
Q Consensus 25 ~~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~---t~~~l~~~~~~ 88 (466)
+++++..|.+|+....+.+.+|+| |.+..-+.. .|-..++.++.+.+++..- +=..|...+|+
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~-~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~ 79 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIA-IGGPGAIFWMWISALLGMATKYAEVTLAQKYRE 79 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHHHHHHHHHHheE
Confidence 344556788999999999999999 888999986 6767788888877766544 34445544443
No 83
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.26 E-value=0.56 Score=46.38 Aligned_cols=82 Identities=9% Similarity=0.059 Sum_probs=54.3
Q ss_pred ccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhc
Q 012295 99 RSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQ 178 (466)
Q Consensus 99 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~ 178 (466)
++..|..++-+||+..+...+...+.......+-+...+.-++.+.+ .+...+.++.++..+.+..
T Consensus 42 ~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g--------------~~~~~~~~~~~~~~~~ll~ 107 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG--------------IPLWIWVLLVAVIAILLLW 107 (358)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcHHHHHHHHHHHHHHHH
Confidence 67888888999999988888888877777777777766666655542 2223455555555554444
Q ss_pred --CCCCCchhHHHHHHHH
Q 012295 179 --IPDFHNMEWLSVIAAI 194 (466)
Q Consensus 179 --~~~l~~l~~~s~~~~~ 194 (466)
.++.+.+..+...-+.
T Consensus 108 ~~~~~y~~~E~~~~~lv~ 125 (358)
T PF01566_consen 108 LSSGGYRRLERILKVLVA 125 (358)
T ss_pred HHhccchHHHHHHHHHHH
Confidence 6677777765444333
No 84
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=95.52 E-value=3.1 Score=41.82 Aligned_cols=178 Identities=11% Similarity=0.048 Sum_probs=100.5
Q ss_pred cccHHHHHHH-HhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHh
Q 012295 98 IRSFTQAVKL-YLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVM 176 (466)
Q Consensus 98 ~~~y~~~~~~-~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl 176 (466)
.+|+.|.... .--++.|++..+...+-.+.-.++.+.-.+..+..+++- ++..-+++..+++...
T Consensus 103 kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv--------------~~~vgv~ig~ilm~~Y 168 (529)
T COG4147 103 KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV--------------PYHVGVVIGGILMMVY 168 (529)
T ss_pred CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC--------------CceeehhhHhHHHHHH
Confidence 4788886554 445667888777777777777788888888888777652 1223345566666666
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccc---cccC----CCCcch---hHHHHHHHHHHHHHh
Q 012295 177 SQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENG-RIKGS---IAGV----PTANLA---DKLWLAFQALGDIAF 245 (466)
Q Consensus 177 ~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~---~~~~----~~~~~~---~~~~~~~~~~~~~~f 245 (466)
....-++...|.+.+--+..+.-.++..+....+.-.+. +.... .+.. ...++. .+..+++...-..++
T Consensus 169 vv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~ 248 (529)
T COG4147 169 VVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMV 248 (529)
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHH
Confidence 777888999998877654444322233333333322111 11100 0100 001111 112233333223333
Q ss_pred hccccceehhhhcc-cCCCCccccchhHHHHHHHHHHHHHHHhhhhhccc
Q 012295 246 AYPYSIILLEIQDT-LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYA 294 (466)
Q Consensus 246 af~~h~~~~~i~~~-m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~ 294 (466)
|..-.|.+.-. ..-| +.|+-|+.+..+......+|+..-+.|+.
T Consensus 249 ---GTAgLPHil~RFfTvp--~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 249 ---GTAGLPHILMRFFTVP--DAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred ---ccCCCCeEEEEEEecC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333 2223 44888999999999999999977666655
No 85
>PRK15015 carbon starvation protein A; Provisional
Probab=95.01 E-value=0.27 Score=51.15 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=81.3
Q ss_pred CCCCCccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccH
Q 012295 22 ESGKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSF 101 (466)
Q Consensus 22 ~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y 101 (466)
-+|+.+.-+.+.+-.+-|=+.++-|+|.+-=|..-.+.||+++.+++++-.++.---..+..-....+ ++-++.
T Consensus 74 ~~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R------~~GrSi 147 (701)
T PRK15015 74 HNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTR------RDGRSL 147 (701)
T ss_pred CCCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeec------CCCccH
Confidence 34444444444456777888999999999999999999999999998776666555555444322111 124899
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhH
Q 012295 102 TQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCL 140 (466)
Q Consensus 102 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 140 (466)
+|++++..|++++.+..+..++.+.....++.....+.+
T Consensus 148 g~ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 148 GELVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888777777766666655555544
No 86
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=94.99 E-value=0.67 Score=47.21 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=82.8
Q ss_pred CCCCCccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccH
Q 012295 22 ESGKPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSF 101 (466)
Q Consensus 22 ~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y 101 (466)
..|+.+.-+.+.+..+-|=+-++-|+|.+-=|-.-+|.||.+|.+++++-+++.---...++-.... .+ +-+|.
T Consensus 43 ~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~Sv--R~----~G~Si 116 (575)
T COG1966 43 KNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSV--RH----GGKSI 116 (575)
T ss_pred ccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeee--cc----CCccH
Confidence 3445555555666788888899999999999999999999999999888777766666666543221 12 23899
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhh
Q 012295 102 TQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTAN 138 (466)
Q Consensus 102 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~ 138 (466)
+|++++.+|+..+.+..+...+.......++......
T Consensus 117 ~~ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~ 153 (575)
T COG1966 117 GEIAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAK 153 (575)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887777766666554444333
No 87
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=94.84 E-value=0.062 Score=54.76 Aligned_cols=232 Identities=15% Similarity=0.153 Sum_probs=129.4
Q ss_pred ccHHHHHHH-HHhhhhch-hhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHH
Q 012295 31 GTICTALAH-IITGVIGA-GVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLY 108 (466)
Q Consensus 31 ~s~~~~~~~-l~~~~iG~-GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~ 108 (466)
-+|++.++. .+-++.|. =.|=+++...|+|...|++++.....++..|..--.....+-.-+.| -.|. +..+.
T Consensus 30 fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G----g~yf-lis~s 104 (643)
T KOG2083|consen 30 FGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG----GVYF-LISRS 104 (643)
T ss_pred EeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC----cEEE-EEEec
Confidence 345555532 23333333 23457999999999999988877777766665544432222122333 2333 33466
Q ss_pred hCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHH
Q 012295 109 LGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL 188 (466)
Q Consensus 109 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~ 188 (466)
+|+..+..+.++..+.+.-.+..|.+-+++...++++.. ..+ ..+.. -.+...+...++. -..+|.
T Consensus 105 lg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~--s~~------~i~gi--~~vt~~ill~i~~----ag~~w~ 170 (643)
T KOG2083|consen 105 LGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETE--SKE------MIDGI--GSVTVLILLAINV----AGVEWE 170 (643)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhc--cHH------Hhcch--hHHHHHHHHHhhh----ccchhH
Confidence 788888888888888888888999999999999998753 111 12221 0111111122222 333454
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhcc-ccc----cccc-----CCCCcchhHHHHHHHHHHHHHhhccccceehhhh
Q 012295 189 SVIAAIMSFAYSFIGFGLGFAKVI-ENGR-IKG----SIAG-----VPTANLADKLWLAFQALGDIAFAYPYSIILLEIQ 257 (466)
Q Consensus 189 s~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~ 257 (466)
+.+-+++.+..+ +.+...+...+ ..+. ..+ ..+. .|+..+. ..+|.-++++.=+..|.-.=..+.
T Consensus 171 ~k~q~~ll~il~-iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~---~tfF~vf~vfFpaatgilaG~nis 246 (643)
T KOG2083|consen 171 AKLQIVLLLILL-IAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG---YTFFSVFAVFFPAATGILAGANIS 246 (643)
T ss_pred HHHHHHHHHHHH-HHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC---CceEeeeeeecchhhhhhcccccc
Confidence 444443322111 11111111111 1110 000 0000 0111111 234556666666776777777889
Q ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHhh
Q 012295 258 DTLKSPPPENKTMKMASMISIFITTFFYLCC 288 (466)
Q Consensus 258 ~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~ 288 (466)
+++|+|+ +..++....+......+|..+
T Consensus 247 GdL~~Pq---~~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 247 GDLKDPQ---KAIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred CCCCCch---hhcccchhhhhhhhhhhhhhh
Confidence 9999997 889999999999999998644
No 88
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.80 E-value=0.37 Score=47.77 Aligned_cols=68 Identities=6% Similarity=0.174 Sum_probs=55.7
Q ss_pred cccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhh
Q 012295 98 IRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMS 177 (466)
Q Consensus 98 ~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~ 177 (466)
..-..+++++.+|+.|+.+..+.+.+.|+.++++....++|+++.+.+. .+++.|.++..+....++
T Consensus 254 ~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-------------~~y~~~v~~~~l~s~~ia 320 (378)
T TIGR00796 254 AQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-------------LSYKTWVIVFTLFSFIVA 320 (378)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCHHHHHHHHHHHHHHHH
Confidence 5667899999999999999999999999999999999999998887531 445666666666666555
Q ss_pred c
Q 012295 178 Q 178 (466)
Q Consensus 178 ~ 178 (466)
.
T Consensus 321 ~ 321 (378)
T TIGR00796 321 N 321 (378)
T ss_pred H
Confidence 5
No 89
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.39 E-value=0.41 Score=48.02 Aligned_cols=127 Identities=16% Similarity=0.260 Sum_probs=82.7
Q ss_pred HHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHH
Q 012295 53 AWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITY 132 (466)
Q Consensus 53 P~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y 132 (466)
-....++|.+.++.+.++-+.+.+.....-... .+.. ++..-..+++++.+|+.|..+..+++.+.|+-++++.
T Consensus 221 ~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~---~~~~---~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL 294 (427)
T PF05525_consen 221 KKYTIKAGLIAGILLALIYGGLAYLGATSSGSF---PDDI---NGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGL 294 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc---cCCC---CHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Confidence 334445666665555554444443332221111 0111 3456678899999999999999999999999999999
Q ss_pred HHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHH
Q 012295 133 TFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSF 201 (466)
Q Consensus 133 ~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 201 (466)
...++|+.++..+. .+++.|.++.+++...++... ++ +.++...-++.+.|-.
T Consensus 295 ~~a~a~yf~~~~~k-------------isY~~~v~i~~i~S~~ian~G-l~--~Ii~~s~PiL~~iYP~ 347 (427)
T PF05525_consen 295 ISACAEYFSELFPK-------------ISYKVWVIIFTIFSFIIANLG-LD--QIIKISVPILMFIYPV 347 (427)
T ss_pred HHHHHHHHHHHhcc-------------cChHHHHHHHHHHHHHHHHhC-HH--HHHHHHHHHHHHHhHH
Confidence 99999999998752 566788877777777766533 23 3344444444444544
No 90
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=93.55 E-value=1 Score=44.42 Aligned_cols=134 Identities=11% Similarity=0.146 Sum_probs=87.8
Q ss_pred HhhhhchhhhhhH---HHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCchhhH
Q 012295 41 ITGVIGAGVLSLA---WSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVC 117 (466)
Q Consensus 41 ~~~~iG~GiL~lP---~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~ 117 (466)
+|+.=.-|+-.-. ...-.+|++.++.+-.+...+.+... ..++.....+ +...-..+..++.+|+.|.++.
T Consensus 208 v~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa-----~s~~~~~~~~-nG~~IL~~~s~~~fG~~G~~lL 281 (431)
T COG1114 208 VNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGA-----TSASAAGLAA-NGGQILSAYSQHLFGSYGSILL 281 (431)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chHhhccccc-chHHHHHHHHHHHhchhhHHHH
Confidence 4444444544433 33335777776666666555555541 1111011111 2345677889999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHHHHH
Q 012295 118 GIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAI 194 (466)
Q Consensus 118 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~~~~ 194 (466)
..++.+.|+-++++.+..++|+.++.++. .|++.|..++++..+.++... ++.+-..|.--+.
T Consensus 282 ~~iv~lACLTTaiGLi~a~aefF~~~~p~-------------~SY~~~v~if~i~sflvan~G-L~~Ii~isvPvL~ 344 (431)
T COG1114 282 GLIVFLACLTTAVGLIVACAEFFSKLVPK-------------LSYKTWVIIFTLISFLVANLG-LEQIIKISVPVLT 344 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------ccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHH
Confidence 99999999999999999999999998763 566788888888777777543 4444444444333
No 91
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=93.48 E-value=9.5 Score=38.54 Aligned_cols=266 Identities=12% Similarity=0.119 Sum_probs=131.1
Q ss_pred CCccccccHHHHHHHHHhhhhchhhhhhHHHHHhhCh--hhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHH
Q 012295 25 KPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGW--IAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFT 102 (466)
Q Consensus 25 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~--~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~ 102 (466)
.+++|+=++++-...=....++.+.--+...--+.|+ .-+++.+.+ .|....+.-.. ..+.|..=..++.
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~v-----G~~~~~~f~~l---ns~~G~~yhIsFp 121 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWV-----GYLFTAIFLVL---NSRPGSDYHISFP 121 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHH-----HHHHHHHHHHH---ccCCCccccccee
Confidence 3456666787777666777777776666666667774 333333222 22222222111 1122211224666
Q ss_pred HHHHHHhCCCchhhH---HHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCC---CcccCCccee--hhhHHHHH
Q 012295 103 QAVKLYLGDKNQKVC---GIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNA---PCAYGDTKHM--LLFGAVQV 174 (466)
Q Consensus 103 ~~~~~~~G~~~~~~~---~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~--~i~~i~~~ 174 (466)
-..|..||-++.... -+.+.+-.+|... -+.++..+.+++.-..+..+... ....+...++ +++-++..
T Consensus 122 v~sR~sFGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~ 198 (572)
T KOG2466|consen 122 VLSRSSFGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASL 198 (572)
T ss_pred eeeeeehhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhh
Confidence 677777877765433 3334444444432 45555555555432211111111 1112223333 34444455
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhcc-cccee
Q 012295 175 VMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYP-YSIIL 253 (466)
Q Consensus 175 pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~h~~~ 253 (466)
|..+.| .++++.+-....+.+.. .+++..++...+.+....-.++..........|.++.++...+=.|. ...|.
T Consensus 199 ~~~~~~-p~~ir~lf~~ka~~t~f---A~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~ 274 (572)
T KOG2466|consen 199 PFYWFP-PYKIRHLFTWKAVLTPF---AAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNA 274 (572)
T ss_pred heeecc-HHHhhhHHHHHHhhhHH---HHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccC
Confidence 655555 56666554444444332 33334444444433321111222223334455666666655555555 67788
Q ss_pred hhhhcccCCCCccccchhHHHHHHHHH----HHHHHHhhhhhccccccccc--ccccccccc
Q 012295 254 LEIQDTLKSPPPENKTMKMASMISIFI----TTFFYLCCGCFGYAAFGNDT--PGNLLTGFG 309 (466)
Q Consensus 254 ~~i~~~m~~p~~~~~~~~~~~~~a~~~----~~~~Y~~~g~~gy~~fg~~~--~~~il~~~~ 309 (466)
|...|--|+| .+....-.++..+ ..++=++.+..++-.||.+- +-++++++.
T Consensus 275 pDFsRF~ksp----~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 275 PDFSRFAKSP----NAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred chhHhhcCCC----CccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 9999888888 3333333333333 33333455566788999884 445565553
No 92
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=92.97 E-value=11 Score=37.82 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=45.8
Q ss_pred ccccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHH---HHHHHHHhhccCC
Q 012295 27 FERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTI---VSSSLLCDCYRFP 89 (466)
Q Consensus 27 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~---~t~~~l~~~~~~~ 89 (466)
+++..|.+++...-+.+.+|+| +-+..-+.+ .|-...+.++.+++++.. |.=-.|...+|..
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~-~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~k 124 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIA-LGGPGAVFWMWIVALFGMATKFAESTLAQKYRVK 124 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHH-cCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEe
Confidence 3445678899999999999999 778888887 677778888877776554 4444555555543
No 93
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=92.74 E-value=12 Score=37.71 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhhchhhhhhHHHHHh-hC--hhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHh
Q 012295 33 ICTALAHIITGVIGAGVLSLAWSMAQ-LG--WIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYL 109 (466)
Q Consensus 33 ~~~~~~~l~~~~iG~GiL~lP~~f~~-~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~ 109 (466)
....-+.++.-..|+|=|=.|-...+ +| |+.+.+-+++.++.--.-+.+-.... ..+++++++++
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~-----------~~~~~~l~~~v- 72 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKS-----------GGGIEDLASRV- 72 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc-----------CCCHHHHhccc-
Confidence 44566778889999998888876653 44 77788888777765444433222211 12688888777
Q ss_pred CCCchhhHH
Q 012295 110 GDKNQKVCG 118 (466)
Q Consensus 110 G~~~~~~~~ 118 (466)
||+...+..
T Consensus 73 ~~~f~~if~ 81 (427)
T PF05525_consen 73 GPKFALIFT 81 (427)
T ss_pred CcHHHHHHH
Confidence 455444333
No 94
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=91.33 E-value=17 Score=36.48 Aligned_cols=106 Identities=16% Similarity=0.085 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCcCccccccHHHHHHHHhC
Q 012295 33 ICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCY-RFPDPEVGPNRIRSFTQAVKLYLG 110 (466)
Q Consensus 33 ~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~-~~~~~~~g~~~~~~y~~~~~~~~G 110 (466)
...-+...+++.+|-| +--.||.-.+.|-..-++..++..++..+.. ++.|-. .+...+ +...+|+.+.. +
T Consensus 11 rlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPl-li~Ef~iGr~~~~---~~~~a~~~l~~---~ 83 (439)
T COG0733 11 RLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPL-LLAEFAIGRRGRK---NAVGAFRKLAP---K 83 (439)
T ss_pred HHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHH-HHHHHHhhhhcCC---ChhHHHHHhcc---C
Confidence 3345566789999998 8889999888886643333333333333333 333321 211111 23456666655 3
Q ss_pred CCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh
Q 012295 111 DKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKS 146 (466)
Q Consensus 111 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 146 (466)
|++++ +.+......+..+.-|.+..|-.+..+...
T Consensus 84 ~~~~~-~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s 118 (439)
T COG0733 84 KKWEW-IGWFGVLGGFLILSFYSVIGGWILSYLVKS 118 (439)
T ss_pred ccchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 344445556666666777777776666543
No 95
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=90.65 E-value=1.9 Score=43.46 Aligned_cols=105 Identities=11% Similarity=0.116 Sum_probs=70.5
Q ss_pred HHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHH
Q 012295 56 MAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFT 135 (466)
Q Consensus 56 f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~ 135 (466)
..++|.+.++.+.++-+.+.+..+.--.. ..+.+ ++..-.....++.+|++++.+..+.+.+.|+-++++....
T Consensus 228 t~~ag~ia~~~L~~vY~gL~~lGa~s~~~---~~~~~---~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a 301 (439)
T PRK15433 228 TVWAGLMAGVGLTLLYLALFRLGSDSASL---VDQSA---NGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCA 301 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccc---ccCCC---cHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666555555555554444311100 00010 2244566788999999999999999999999999999999
Q ss_pred hhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCC
Q 012295 136 TANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIP 180 (466)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~ 180 (466)
+++++++..+ .+++.|..+..++.++++...
T Consensus 302 ~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~G 332 (439)
T PRK15433 302 CAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNLG 332 (439)
T ss_pred HHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHhH
Confidence 9999877642 445677777777777777643
No 96
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=83.49 E-value=39 Score=35.47 Aligned_cols=244 Identities=12% Similarity=0.094 Sum_probs=117.8
Q ss_pred cccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHH
Q 012295 28 ERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVK 106 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 106 (466)
-|+..++.....++.+.+|.+ ++++|.-..+.|.-..... ........++.....--..+. ...+-.|--+
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~-----~~~l~~~~~~~~~f~Pvf~~~---~v~~~~eYl~ 115 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFE-----WNALLSVLLLGWIFIPVFYRL---GVTTMYEYLE 115 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHH-----HHHHHHHHhhheEEEEEEEec---CeeehhHHHH
Confidence 344556666677777777776 8899987777765432221 111222222222111000111 2345555556
Q ss_pred HHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchh
Q 012295 107 LYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNME 186 (466)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~ 186 (466)
.-||+..+.+..+...+..+.-...++..-+-.+++..+.. ...-..+..+++..-.....+|..-
T Consensus 116 ~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~--------------~~l~~~~~~~ic~~YT~~GGlkaVi 181 (585)
T KOG2349|consen 116 KRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGIN--------------LYLIVVILGLICVFYTALGGLKAVI 181 (585)
T ss_pred HHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccC--------------ceeehHHHHHHHHHHHHhcCeeEEE
Confidence 77777777777666666555544444444444444444320 0111233344444445566677766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcccc-cccc----cCCCCcchhHHHHHHHHHHHH-Hhhccccceehh
Q 012295 187 WLSVIAAIMSFAYSFIGFGLGFAKVI-----ENGRIK-GSIA----GVPTANLADKLWLAFQALGDI-AFAYPYSIILLE 255 (466)
Q Consensus 187 ~~s~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~-~faf~~h~~~~~ 255 (466)
|.=.+-...++.-...+.+....+.- .....+ +... -..|++..+.+|..+.+-... .--|..+++.
T Consensus 182 ~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~-- 259 (585)
T KOG2349|consen 182 WTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLI-- 259 (585)
T ss_pred EhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHH--
Confidence 66555555444322222222111110 000111 1111 122344455667655443333 3344455554
Q ss_pred hhcccCCCCccccchhHHHHHHHHHHHHHHH---hhhhhcccccc
Q 012295 256 IQDTLKSPPPENKTMKMASMISIFITTFFYL---CCGCFGYAAFG 297 (466)
Q Consensus 256 i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~---~~g~~gy~~fg 297 (466)
+||.|.-|+- ++.++++........+... ..|+.-|..|-
T Consensus 260 VQR~lsl~sl--k~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~ 302 (585)
T KOG2349|consen 260 VQRYLSLPSL--KHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYT 302 (585)
T ss_pred HhHHhccccH--HHhhhhhhhhhhHHHHHHHhhcccceeEeeecc
Confidence 5666665543 8888887777666665554 44555555553
No 97
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=83.07 E-value=53 Score=32.84 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=29.9
Q ss_pred ccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHH
Q 012295 99 RSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQ 144 (466)
Q Consensus 99 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 144 (466)
++..|.+++.++|+.++...+...+...+...+-..-.+.-++.++
T Consensus 64 ~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 64 LDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred CCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999887766555555445555544444444444443
No 98
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=81.94 E-value=62 Score=32.80 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHcc--chHHHHHHhhhhhcchhhhhhhhHHHHH
Q 012295 375 ILRLCFRTAYVVSTTAVAIIFP--YFNQVLGVLGALNFWPLAIYFPVEMYFV 424 (466)
Q Consensus 375 ~~~~~~~~~~~~~~~~va~~~p--~~~~i~~~~Ga~~~~~~~~ilP~~~~~~ 424 (466)
.+|+..|...++++.+++++.. +++.+.++.--+-+..+=|..=++++.-
T Consensus 357 ~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ft 408 (503)
T KOG1291|consen 357 LRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFT 408 (503)
T ss_pred HHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhh
Confidence 5678889999999999999875 5777777766555555545444444443
No 99
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=67.89 E-value=1.6e+02 Score=30.74 Aligned_cols=30 Identities=13% Similarity=0.084 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhhchh-hhhhHHHHHhhChh
Q 012295 33 ICTALAHIITGVIGAG-VLSLAWSMAQLGWI 62 (466)
Q Consensus 33 ~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~ 62 (466)
..+-....++..+|.| +.-.|+-..+-|-.
T Consensus 7 ~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~ 37 (523)
T PF00209_consen 7 KIGFILACIGYAVGLGNIWRFPYLCYENGGG 37 (523)
T ss_dssp HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTH
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3456677788999998 88899988877643
No 100
>PLN00151 potassium transporter; Provisional
Probab=65.67 E-value=2.2e+02 Score=31.41 Aligned_cols=102 Identities=13% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchh--HHH-----HHHHHHHHHHhhccccceeh
Q 012295 182 FHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLAD--KLW-----LAFQALGDIAFAYPYSIILL 254 (466)
Q Consensus 182 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~faf~~h~~~~ 254 (466)
...-+.-..++-+..+.+..+. ++.+|.+.+++|.- +..+ +|.. .++ +.+..+|-++.|..|...
T Consensus 291 ~GT~kVg~~FgPImllWFl~i~-~iGiynI~~~~p~V--l~Al---nP~Y~~~Ff~~~~~~gw~~LGgVvLciTGaEA-- 362 (852)
T PLN00151 291 FGTSKVGFAFGPALALWFCSLG-GIGIYNLVKYDSSV--FRAF---NPVYIYYFFKRNSTKAWSALGGCVLCATGSEA-- 362 (852)
T ss_pred ccchhhhhhhccHHHHHHHHHH-HHHHHHHHhcCHHH--Hhhh---CHHHHHHHHHhCCCceEEEecceeeeeccchh--
Confidence 4444444556666666555444 36778887764421 1111 1111 010 223456666666666654
Q ss_pred hhhcccCCCCccccchhHHHHHHHHHHHHHHHhhhhhcccc
Q 012295 255 EIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAA 295 (466)
Q Consensus 255 ~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 295 (466)
++.+|-|-. ++--+..+.....-+++.-=+|-..|+.
T Consensus 363 -LfADLGHFg---~~sIqiaw~~~V~P~LlL~Y~GQaA~L~ 399 (852)
T PLN00151 363 -MFADLGYFS---VRSIQLAFTCLVLPCLLLAYMGQAAYLM 399 (852)
T ss_pred -hhcccCCCC---ccceeeeehhhHHHHHHHHHcchHHHHh
Confidence 456776553 2223333444444444433344444554
No 101
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=64.91 E-value=1.7e+02 Score=29.83 Aligned_cols=71 Identities=14% Similarity=0.033 Sum_probs=44.2
Q ss_pred cHHHHHHHHHhhhhchhhhhhHHHHH-hhC--hhhHHHHHHHHHHHHHH-HHHHHHhhccCCCCCcCccccccHHHHHHH
Q 012295 32 TICTALAHIITGVIGAGVLSLAWSMA-QLG--WIAGPLCMIAFASVTIV-SSSLLCDCYRFPDPEVGPNRIRSFTQAVKL 107 (466)
Q Consensus 32 s~~~~~~~l~~~~iG~GiL~lP~~f~-~~G--~~~g~i~l~~~~~~~~~-t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 107 (466)
.....-+.++.-..|+|=|=.|-... ++| |+.+.+.+.+.++.--. +...+.+. ..+++|++++
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~------------~g~~~~l~~r 76 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKV------------GGGVDSLSTP 76 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc------------CCCHHHHhhh
Confidence 45667788999999999888887765 355 66677776666643322 22222232 1367888777
Q ss_pred HhCCCchh
Q 012295 108 YLGDKNQK 115 (466)
Q Consensus 108 ~~G~~~~~ 115 (466)
+ ||+...
T Consensus 77 v-~~~f~~ 83 (439)
T PRK15433 77 I-GKVAGV 83 (439)
T ss_pred c-chHHHH
Confidence 6 344443
No 102
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=60.49 E-value=1.8e+02 Score=28.80 Aligned_cols=240 Identities=12% Similarity=0.028 Sum_probs=121.3
Q ss_pred HHHHHHHhhhhch-hhhhhHHHHHhhChhhHHHHHHHHHHH-HHHHHHHHHhhccCCCCCcCccccccHHHHHHHHh-CC
Q 012295 35 TALAHIITGVIGA-GVLSLAWSMAQLGWIAGPLCMIAFASV-TIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYL-GD 111 (466)
Q Consensus 35 ~~~~~l~~~~iG~-GiL~lP~~f~~~G~~~g~i~l~~~~~~-~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~-G~ 111 (466)
--.+....+-+++ ..++=|.+--+.|.- .+++..+-+- ...+.-.+.+-......+ .++.|-.|+-++=+ ++
T Consensus 45 VlAmt~~aTYisaSSFigGpgaayk~Glg--wvlLa~iqvp~~~l~lgvlgkk~~~~ar~---~nAltI~D~l~~RY~s~ 119 (473)
T COG4145 45 VLAMTFTATYISASSFIGGPGAAYKYGLG--WVLLAMIQVPTVWLALGVLGKKFAILARE---YNALTINDLLFARYQSR 119 (473)
T ss_pred ehhhHHHHHHHHHhhhcCCCcHHHHhchH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHH---hCCeeHHHHHHHHhcch
Confidence 3344444444444 244556665554433 2333333222 223333333322111111 33567788777654 55
Q ss_pred CchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHH
Q 012295 112 KNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVI 191 (466)
Q Consensus 112 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~ 191 (466)
.-.|...+...+...+..++..+-.++.++...+ .++..-.++++..+..-.....++.....-.+
T Consensus 120 fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g--------------idY~tgL~ifa~~V~iYt~fGGFRAvvltD~I 185 (473)
T COG4145 120 FLVWLASLSLIFFFVGAMTVQFIGGARLLETALG--------------IDYTTGLLIFAVSVAIYTAFGGFRAVVLTDTI 185 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC--------------CCchhhHHHHHHHHHHHHhhcceeeeehHHHH
Confidence 5677788888888888888888888888777654 44455567777777766666777776655444
Q ss_pred HHHHHHHHHHHHHHHHHHHH------Hh-hcccccccccCCCCcchhH--HHHHHHHH-HHHHhhccccceehhhhcccC
Q 012295 192 AAIMSFAYSFIGFGLGFAKV------IE-NGRIKGSIAGVPTANLADK--LWLAFQAL-GDIAFAYPYSIILLEIQDTLK 261 (466)
Q Consensus 192 ~~~~~~~~~~i~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~faf~~h~~~~~i~~~m~ 261 (466)
.-..++.-.++.++..+|.. ++ -.+.|++.-..+ +.++ -..+..++ =.++++--+.+-..-=+-..|
T Consensus 186 QG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~---~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~k 262 (473)
T COG4145 186 QGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQ---GADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFK 262 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCC---CCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhcc
Confidence 44444433333333333321 11 011222221111 1111 00111111 112222233333332223345
Q ss_pred CCCccccchhHHHHHHHHHHHHHHH---hhhhhccccccccc
Q 012295 262 SPPPENKTMKMASMISIFITTFFYL---CCGCFGYAAFGNDT 300 (466)
Q Consensus 262 ~p~~~~~~~~~~~~~a~~~~~~~Y~---~~g~~gy~~fg~~~ 300 (466)
|. |-+++.+..+..+..++-+ ..|.+|...+.|-+
T Consensus 263 Ds----kaih~gmiigt~vi~il~~gmhl~G~~graViPdlt 300 (473)
T COG4145 263 DS----KAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLT 300 (473)
T ss_pred ch----hHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCC
Confidence 54 7788888888777766655 55777777776654
No 103
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=57.65 E-value=2.5e+02 Score=29.42 Aligned_cols=183 Identities=16% Similarity=0.227 Sum_probs=85.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHh--CCCchhhHHHHHHHHHhhhHHHH---HHH
Q 012295 61 WIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYL--GDKNQKVCGIFVQESLYGAGITY---TFT 135 (466)
Q Consensus 61 ~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~--G~~~~~~~~~~~~~~~~g~~~~y---~i~ 135 (466)
-+.|++.+++-++.-..+.+...-..+.++..+| ..-....+.++.. +|+.+++ +..+..+|.+..| +++
T Consensus 35 ~vlG~lSlIfWtL~liv~iKYv~ivlradn~GEG--Gi~aL~sL~~~~~~~~~~~~~~---l~~l~l~G~al~~gDgviT 109 (534)
T PF02705_consen 35 NVLGVLSLIFWTLTLIVTIKYVLIVLRADNNGEG--GIFALYSLIRRFLKSSKRRRWL---LLILGLLGAALFYGDGVIT 109 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHheEEEEEEeCCCCCh--hHHHHHHHHHHhhccchhHHHH---HHHHHHHHhhhhhcceeec
Confidence 3557888888888888888777766655443333 1223334444322 2333343 3444455554422 122
Q ss_pred hhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHH-HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012295 136 TANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGA-VQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIEN 214 (466)
Q Consensus 136 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (466)
-+-+.-+.++..... ....+ -+++..++ +++.|-.+.+...-+.-..++-++.+.+..+.. ..++.+.++
T Consensus 110 PAISVlSAvEGl~v~------~p~~~--~~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~-~G~~~I~~~ 180 (534)
T PF02705_consen 110 PAISVLSAVEGLEVA------TPSLE--PYVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGV-LGLYNIIQH 180 (534)
T ss_pred chHHHHHHhhhhhcc------CCCCc--ceehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHH-HHHHHHhhC
Confidence 222223333332111 11122 22222222 222222223233334445577777776665543 567777665
Q ss_pred cccccccccCCCCcchhH-----HHHHHHHHHHHHhhccccceehhhhcccCCCC
Q 012295 215 GRIKGSIAGVPTANLADK-----LWLAFQALGDIAFAYPYSIILLEIQDTLKSPP 264 (466)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~ 264 (466)
+.. ...+. +...-. .+..+..+|.++.|..|.+.. +.||-|=.
T Consensus 181 p~V---l~A~n-P~yai~f~~~~~~~~~~~LG~V~L~~TGaEAL---yADmGHfg 228 (534)
T PF02705_consen 181 PEV---LKALN-PYYAIRFFIRNGWIGFFVLGAVFLCVTGAEAL---YADMGHFG 228 (534)
T ss_pred HHH---HHHhC-HHHHHHHHHHcCCchhhhcchHHHHHhhHHHH---Hhhhcccc
Confidence 321 11111 000111 113466777777777777654 46787653
No 104
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=53.20 E-value=2.9e+02 Score=28.86 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=41.5
Q ss_pred ccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh
Q 012295 99 RSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKS 146 (466)
Q Consensus 99 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 146 (466)
....++-...+||++...+..+..+..+..+++-++..++....+-.+
T Consensus 325 ~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred ChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 467788889999999998999999999999999999999988877653
No 105
>PHA02764 hypothetical protein; Provisional
Probab=52.01 E-value=2.3e+02 Score=27.44 Aligned_cols=93 Identities=13% Similarity=0.030 Sum_probs=55.2
Q ss_pred cccccHHHHHH-HHHhhhhchhhhhhHHHHHhh--ChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHH
Q 012295 28 ERTGTICTALA-HIITGVIGAGVLSLAWSMAQL--GWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQA 104 (466)
Q Consensus 28 ~~~~s~~~~~~-~l~~~~iG~GiL~lP~~f~~~--G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~ 104 (466)
-|..+.+.+++ |+.+...|.++ +.|+-++.. |.- .....++.++++.-.+....+..... |+.| ..+.|-
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAm-PrAG--GdYVYI-- 83 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKF-PLNG--GDYAYI-- 83 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC--ceEEEh--
Confidence 44556667776 55555555543 556644433 333 34455566666666666666654443 4444 234443
Q ss_pred HHHHhCCCchhhHHHHHHHHHhhh
Q 012295 105 VKLYLGDKNQKVCGIFVQESLYGA 128 (466)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~ 128 (466)
++++||+.+.+..+..+......
T Consensus 84 -SRAFGP~~GFLvG~a~WLtl~~G 106 (399)
T PHA02764 84 -RTAFSSKFYTIFGISLWLTYVLS 106 (399)
T ss_pred -HHhhCccHHHHHHHHHHHHHHhh
Confidence 88899999998888877665544
No 106
>PRK12768 CysZ-like protein; Reviewed
Probab=51.53 E-value=62 Score=29.92 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=19.4
Q ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHhhh
Q 012295 258 DTLKSPPPENKTMKMASMISIFITTFFYLCCG 289 (466)
Q Consensus 258 ~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g 289 (466)
+++.|| ++++++..+...+..++....
T Consensus 10 ~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 10 ARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 456655 688888888888877776653
No 107
>PRK09928 choline transport protein BetT; Provisional
Probab=50.70 E-value=2.7e+02 Score=30.05 Aligned_cols=68 Identities=10% Similarity=0.039 Sum_probs=45.8
Q ss_pred hhhHHHHHHHhhhhHHHHHhhhcccCC-CCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHHHH
Q 012295 126 YGAGITYTFTTANCLRAIQKSNCYHRE-GHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAA 193 (466)
Q Consensus 126 ~g~~~~y~i~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~~~ 193 (466)
...+..|.++..|+-..++...+.+.. ..+++..+.+.+|.++.+++.+.|.....++.++..+.++.
T Consensus 416 ~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~a 484 (679)
T PRK09928 416 TITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMG 484 (679)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334455788889998888887665432 22344456677888888888777777776666666655554
No 108
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=50.69 E-value=2.9e+02 Score=28.24 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=41.9
Q ss_pred HhhhHHHHHHHhhhhHHHHHhhhcccC-CCCCCCcccCCcceehhhHHHHHHhhcCCC-CCchhHHHHHHH
Q 012295 125 LYGAGITYTFTTANCLRAIQKSNCYHR-EGHNAPCAYGDTKHMLLFGAVQVVMSQIPD-FHNMEWLSVIAA 193 (466)
Q Consensus 125 ~~g~~~~y~i~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~-l~~l~~~s~~~~ 193 (466)
....+..|.++..|.........+.+. +.++++....+.+|.++.+.+...+..... ++.++..+.++.
T Consensus 362 ~~il~~if~vTs~DS~s~vla~~~s~~g~~~~ep~~~~ri~W~v~ig~~a~~ll~~gG~l~~lQ~~~ii~a 432 (453)
T TIGR00842 362 ALIVIIIFFITSADSGALVLANTSSRGGQLGEEPPKWVRVFWAVAIGLIALVLLFSGGSLAALQTTAIIAA 432 (453)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344455677888888888877664432 222234456677788777777666666554 555555554444
No 109
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=50.21 E-value=41 Score=30.67 Aligned_cols=70 Identities=17% Similarity=0.324 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHccchHHHHHHh---------hhhhcchhhhhhhhHHHHHHhcc-----CccchhHHHHHHHHHHHHH
Q 012295 382 TAYVVSTTAVAIIFPYFNQVLGVL---------GALNFWPLAIYFPVEMYFVQKKI-----GAWTRKWIVLRTFSFICLL 447 (466)
Q Consensus 382 ~~~~~~~~~va~~~p~~~~i~~~~---------Ga~~~~~~~~ilP~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~ 447 (466)
-.+...++++|..++.++-++.++ ||.++..+.++= |+...|. .-...+.+++|+++++|++
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~l 235 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLL 235 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHH
Confidence 345556667777777776666554 888887777665 3333222 1112234446778888888
Q ss_pred HHHHHHHH
Q 012295 448 VTIIGLIG 455 (466)
Q Consensus 448 ~~~~g~~~ 455 (466)
+.+-+++.
T Consensus 236 l~lr~~i~ 243 (262)
T KOG4812|consen 236 LFLRGFIN 243 (262)
T ss_pred HHHHHHHh
Confidence 88777653
No 110
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=50.14 E-value=2.3e+02 Score=28.58 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=36.4
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHH
Q 012295 103 QAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQ 144 (466)
Q Consensus 103 ~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 144 (466)
+--+..+|.++.+++.++..+..+.+.+++....-+++..++
T Consensus 297 ~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 297 AAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455788999999999999999999999999999998887
No 111
>PRK09950 putative transporter; Provisional
Probab=47.91 E-value=2.9e+02 Score=28.80 Aligned_cols=69 Identities=9% Similarity=0.036 Sum_probs=43.0
Q ss_pred HhhhHHHHHHHhhhhHHHHHhhhcccCC-CCCCCcccCCcceehhhHHHHHHhhcCCC-CCchhHHHHHHH
Q 012295 125 LYGAGITYTFTTANCLRAIQKSNCYHRE-GHNAPCAYGDTKHMLLFGAVQVVMSQIPD-FHNMEWLSVIAA 193 (466)
Q Consensus 125 ~~g~~~~y~i~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~pl~~~~~-l~~l~~~s~~~~ 193 (466)
....+..|.++..|+..........+.. +++++..+.+.+|.+..+.+...+.+... ++.++..+.++.
T Consensus 408 ~~vl~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~a 478 (506)
T PRK09950 408 YLGIMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLTA 478 (506)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3444556778888888888876655432 22344445677788777777666666554 666655555544
No 112
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=46.33 E-value=28 Score=22.77 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccccccccc
Q 012295 270 MKMASMISIFITTFFYLCCGCFGYAAFGNDT 300 (466)
Q Consensus 270 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~ 300 (466)
|..+..++..+.+++..+.|..-|.+||.-.
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4456777777888888888888888998664
No 113
>PLN00149 potassium transporter; Provisional
Probab=44.93 E-value=4.6e+02 Score=28.83 Aligned_cols=106 Identities=11% Similarity=0.063 Sum_probs=53.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchh--HHH-----HHHHHHHHHHhhccccce
Q 012295 180 PDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLAD--KLW-----LAFQALGDIAFAYPYSII 252 (466)
Q Consensus 180 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~faf~~h~~ 252 (466)
.....-+.-..++-++.+.+..+. ++.+|.+.+++|.- +..+ +|.. .++ +.+..+|-++.|..|...
T Consensus 213 Q~~GT~kvg~~FgPIml~Wf~~i~-~iGiyni~~~~p~V--l~Al---nP~y~~~f~~~~~~~g~~~LGgV~L~iTG~EA 286 (779)
T PLN00149 213 QHYGTHRVGFLFAPVVLTWLLCIS-AIGVYNIFHWNPHV--YQAL---SPYYMYKFLKKTQRGGWMSLGGILLCITGSEA 286 (779)
T ss_pred hccccHHHhhhhhhHHHHHHHHHH-HHHHHHHHhcCHhH--hhhc---CHHHHHHHHHHCCCceeEeecchhhcccchhh
Confidence 334444555566766666555444 36788887764421 1111 1111 111 234567777777777665
Q ss_pred ehhhhcccCCCCccccchhHHHHHHHHHHHHHHHhhhhhcccccc
Q 012295 253 LLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG 297 (466)
Q Consensus 253 ~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg 297 (466)
++.+|-|-. ++--+..+.....-+++.-=+|-..|+.-.
T Consensus 287 ---LyADlGHF~---~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~ 325 (779)
T PLN00149 287 ---MFADLGHFS---QLSIKIAFTSLVYPSLILAYMGQAAYLSKH 325 (779)
T ss_pred ---hhhcccCCC---ccceeeeehhhHHHHHHHHhhhHHHHHhcC
Confidence 456777653 333334444444444443344555555533
No 114
>TIGR00909 2A0306 amino acid transporter.
Probab=43.74 E-value=2.6e+02 Score=28.12 Aligned_cols=48 Identities=8% Similarity=-0.087 Sum_probs=41.6
Q ss_pred ccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh
Q 012295 99 RSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKS 146 (466)
Q Consensus 99 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 146 (466)
....+..++..|+++..++.+...+..++...+.+...++.+....++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 346678888889999999999999999999999999999999888754
No 115
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=43.15 E-value=2.2e+02 Score=26.47 Aligned_cols=35 Identities=3% Similarity=0.234 Sum_probs=22.9
Q ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHhhhhhcccccc
Q 012295 258 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG 297 (466)
Q Consensus 258 ~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg 297 (466)
+.+++| ++++.......+..++|...-..++-.++
T Consensus 19 ~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~ 53 (251)
T PRK04949 19 KLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLD 53 (251)
T ss_pred HHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456554 78888888888888877766333333333
No 116
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=41.24 E-value=1e+02 Score=31.17 Aligned_cols=180 Identities=16% Similarity=0.080 Sum_probs=99.7
Q ss_pred cchhHHHHHHHHHHH-HHHHhhhhhccccccccccccccccccccCchHHHHHHHHHHHHHHHhhccccccchHHHHHHH
Q 012295 268 KTMKMASMISIFITT-FFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERW 346 (466)
Q Consensus 268 ~~~~~~~~~a~~~~~-~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~ 346 (466)
++-+++..-+..+.. .-.++....++..|+.--++..-+-....+++.-..............++|...+++.....+.
T Consensus 221 ~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSF 300 (415)
T COG0814 221 KNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSF 300 (415)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 455553444444444 4444667777777755444444443443334444444455555555578888888877665543
Q ss_pred Hhh---hCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHccc-hHHHHHHhhhhhcchhhhhhhhHHH
Q 012295 347 FTR---KYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPVEMY 422 (466)
Q Consensus 347 ~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~p~-~~~i~~~~Ga~~~~~~~~ilP~~~~ 422 (466)
+.. .++......+ ..+.+..|..........+.+.++..|. +....+..|++..+..+-+.|.+++
T Consensus 301 lgv~lg~~~~~~~~~~----------~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~ 370 (415)
T COG0814 301 LGVYLGLFEGLADLFK----------KSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLF 370 (415)
T ss_pred hCchhhHHHhhhHHHH----------hccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 322 1111100000 0012233555566666677777777774 7888888998998999999999999
Q ss_pred HHHhccC--ccchhHHHH-HHHHHHHHHHHHHHHHHHH
Q 012295 423 FVQKKIG--AWTRKWIVL-RTFSFICLLVTIIGLIGSI 457 (466)
Q Consensus 423 ~~~~~~~--~~~~~~~~~-~~~~~~g~~~~~~g~~~si 457 (466)
++-++.. ....+++.- .....+-+++|+......+
T Consensus 371 ~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~ 408 (415)
T COG0814 371 IKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPF 408 (415)
T ss_pred HHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHH
Confidence 9876543 333343332 2244444444444443333
No 117
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=40.52 E-value=1.8e+02 Score=30.02 Aligned_cols=145 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhH
Q 012295 61 WIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCL 140 (466)
Q Consensus 61 ~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 140 (466)
..++...++..+++..++.++-..-.....+ ....+.++...+.+...... -.........+..+.++..|..
T Consensus 341 ~~psl~~~~wf~ifGg~al~~~~~g~~~~~~----~~~~g~~~a~~~~l~~lP~~---~i~~~~~lil~~~f~vTs~DS~ 413 (485)
T PF02028_consen 341 LVPSLFCFLWFSIFGGYALYLQLSGAGDLAA----ANEQGPEAALFAFLEQLPLS---KILSILFLILIFIFFVTSADSA 413 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTSS-HHH----HHHH-HHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHCchHHhhHhhhhhhHHH----HhhcchhhHHHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccHH
Q ss_pred HHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012295 141 RAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIEN 214 (466)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (466)
.........+. ++++....+.+|.++.+++...+.....++.++.++.++.+=.....+++.+..++...++
T Consensus 414 ~~~la~~s~~~--~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~d 485 (485)
T PF02028_consen 414 TYVLAMLSSKG--DEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKED 485 (485)
T ss_dssp HHHHHHHHCTT--TSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCC--CCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 118
>CHL00020 psbN photosystem II protein N
Probab=39.23 E-value=32 Score=22.21 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccc
Q 012295 273 ASMISIFITTFFYLCCGCFGYAAFGNDT 300 (466)
Q Consensus 273 ~~~~a~~~~~~~Y~~~g~~gy~~fg~~~ 300 (466)
+..++..+.+++..+.|..-|.+||...
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 5566677777777777888888888654
No 119
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=32.91 E-value=33 Score=22.15 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccc
Q 012295 273 ASMISIFITTFFYLCCGCFGYAAFGNDT 300 (466)
Q Consensus 273 ~~~~a~~~~~~~Y~~~g~~gy~~fg~~~ 300 (466)
+..++..+.+++..+.|...|.+||...
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 4456667777777778888888998554
No 120
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=31.69 E-value=6.7e+02 Score=26.82 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=75.7
Q ss_pred hhhhchhhhh-hHHHHHh-------hChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHHHhCCCc
Q 012295 42 TGVIGAGVLS-LAWSMAQ-------LGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDKN 113 (466)
Q Consensus 42 ~~~iG~GiL~-lP~~f~~-------~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~ 113 (466)
=.-||+..|- +..+|.. -.-+.|++.+++-++.-..+.+.+.-..+.++..+| ..-....+.++.-.++.
T Consensus 21 yGDIGTSPLY~~~~~f~~~~~~~~~~~~vlGvlSLIfWtL~livtiKYv~ivlrADn~GEG--Gi~AL~aL~~~~~~~~~ 98 (622)
T PRK10745 21 YGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLILVVSIKYLTFVMRADNAGEG--GILTLMSLAGRNTSART 98 (622)
T ss_pred ecCCCCChHHHHHHHhccCCCCCCChhHeehhhHHHHHHHHHHHHHHhheEEEecCCCCCc--hHHHHHHHHhhhcccch
Confidence 3445665443 4445532 113568899999998888888888876655443333 12223334332222233
Q ss_pred hhhHHHHHHHHHhhhHHHH---HHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHH-HHHHhhcCCCCCchhHHH
Q 012295 114 QKVCGIFVQESLYGAGITY---TFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGA-VQVVMSQIPDFHNMEWLS 189 (466)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~y---~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~~pl~~~~~l~~l~~~s 189 (466)
+. ++.....+|.+..| +++-+.+.-+.+++.... ....+. +++..++ +++.|-.+.....-+.-.
T Consensus 99 ~~---~l~~lgl~Gaal~~gDgvITPAISVLSAVEGL~v~------~p~l~~--~Vvpit~~ILv~LF~iQ~~GT~~vG~ 167 (622)
T PRK10745 99 TS---MLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIV------APQLDT--YIVPLSIIVLTLLFMIQKHGTGMVGK 167 (622)
T ss_pred hH---HHHHHHHHHHHHHhhccccchhHHHHHHhhccccc------CCCCCC--ccHHHHHHHHHHHHHHhccccHHHhh
Confidence 32 34445555655532 122233333333332111 111222 2222222 222232333344445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 012295 190 VIAAIMSFAYSFIGFGLGFAKVIEN 214 (466)
Q Consensus 190 ~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (466)
.++-++.+.|..+.. ..++.+.++
T Consensus 168 ~FgPIm~vWF~~i~~-~Gi~~I~~~ 191 (622)
T PRK10745 168 LFAPIMLTWFLTLAV-LGLRSIIAN 191 (622)
T ss_pred hhhhHHHHHHHHHHH-HHHHHHhcC
Confidence 677777776665444 566666543
No 121
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=31.52 E-value=6.2e+02 Score=26.38 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=41.7
Q ss_pred hhHHHHHHHhhhhHHHHHhhhcccCC-CCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHHHH
Q 012295 127 GAGITYTFTTANCLRAIQKSNCYHRE-GHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAA 193 (466)
Q Consensus 127 g~~~~y~i~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~~~ 193 (466)
..+..|.++..|.-.......+.+.. .++++....+.+|.++.+.+.+.+.+...++.++..+.++.
T Consensus 413 il~~if~vTsaDS~t~vla~~ts~g~~~~~~p~~~~ri~W~v~ig~ia~~Ll~~GGl~~lQt~sii~a 480 (504)
T PRK03356 413 ILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGG 480 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34455778888888777776655432 22344455677788887777776666665555555544443
No 122
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=30.63 E-value=5.5e+02 Score=25.59 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh
Q 012295 101 FTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKS 146 (466)
Q Consensus 101 y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 146 (466)
.....+...|++..+++.+...+.+++...+.+...++.+..+.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d 305 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARD 305 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhcccccccc
Confidence 6678888889999999999999999999999999999999998875
No 123
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=27.57 E-value=8.2e+02 Score=26.57 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=52.4
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchh--HH-----HHHHHHHHHHHhhcccc
Q 012295 178 QIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLAD--KL-----WLAFQALGDIAFAYPYS 250 (466)
Q Consensus 178 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~faf~~h 250 (466)
.+.....-+.-..++-++.+.|..+.. ..++.+.+.+|. -+..+ +|.. .+ +..+..+|.++.|..|.
T Consensus 181 ~iQ~~GT~kvg~~FgPim~vWF~~l~~-~Gi~~I~~~~P~--Vl~Al---nP~ya~~f~~~~~~~~~~~LG~V~L~iTGa 254 (688)
T TIGR00794 181 LIQRFGTAKVGFTFAPIILVWLLLLAG-IGIYNIVKFNPE--VLKAL---SPYYAVQFFIEYGTVGWVSLGGVVLSITGV 254 (688)
T ss_pred HHhccccHHHhhhhhhHHHHHHHHHHH-HHHHHHHhcCHH--HHhHh---CHHHHHHHHHHCCCceeeeccchhheeccH
Confidence 334455555666777777776665444 567777763321 01111 1111 01 12345667777777766
Q ss_pred ceehhhhcccCCCCccccchhHHHHHHHHHHHHHHHhhhhhcccc
Q 012295 251 IILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAA 295 (466)
Q Consensus 251 ~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 295 (466)
.. ++.+|-|-. ++--+..+......+++--=+|-..|+.
T Consensus 255 EA---LyADmGHFg---~~~Ir~aw~~~V~P~L~LnY~GQgA~ll 293 (688)
T TIGR00794 255 EA---MFADLGHFG---KLPIQLAWFTFVYPSLILCYIGQAAYLS 293 (688)
T ss_pred hh---hhcccCCCC---cccceeehHHHHHHHHHHHHcchHHHHh
Confidence 54 467787653 2333344444444444333334444444
No 124
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=24.32 E-value=4.1e+02 Score=27.21 Aligned_cols=47 Identities=13% Similarity=0.103 Sum_probs=41.9
Q ss_pred cHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh
Q 012295 100 SFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKS 146 (466)
Q Consensus 100 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 146 (466)
.+.+..++..+++...++++......++...+.+...++.+..+..+
T Consensus 275 p~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~d 321 (478)
T PF00324_consen 275 PFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARD 321 (478)
T ss_pred chhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhh
Confidence 57788888889999999999999999999999999999999888764
No 125
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=24.11 E-value=6.9e+02 Score=25.81 Aligned_cols=45 Identities=18% Similarity=0.039 Sum_probs=37.8
Q ss_pred cHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHh
Q 012295 100 SFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQK 145 (466)
Q Consensus 100 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 145 (466)
--.|.+++.+|.+. |++-+.+.+.++|..-+.+...++.+..-.+
T Consensus 274 Vav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ar 318 (479)
T KOG1287|consen 274 VAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAR 318 (479)
T ss_pred HHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 45578899999999 9999999999999988888888887766654
No 126
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=23.84 E-value=1.9e+02 Score=25.74 Aligned_cols=65 Identities=17% Similarity=0.060 Sum_probs=40.9
Q ss_pred hHHHHHHhhhhhcchhhhhhhhHHHHHHhccCc---------cchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012295 398 FNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGA---------WTRKWIV-LRTFSFICLLVTIIGLIGSIEGLIS 462 (466)
Q Consensus 398 ~~~i~~~~Ga~~~~~~~~ilP~~~~~~~~~~~~---------~~~~~~~-~~~~~~~g~~~~~~g~~~si~~ii~ 462 (466)
++.-.-..|++.+.-+..++|+...+...|+.. .++...+ .....++|++.++++...|...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345556678899999999999999999877621 1222222 2234455666666666666555544
No 127
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.26 E-value=75 Score=19.94 Aligned_cols=31 Identities=13% Similarity=-0.032 Sum_probs=17.9
Q ss_pred HHHHhhhhhcchhhhhhhhHHHHHHhccCcc
Q 012295 401 VLGVLGALNFWPLAIYFPVEMYFVQKKIGAW 431 (466)
Q Consensus 401 i~~~~Ga~~~~~~~~ilP~~~~~~~~~~~~~ 431 (466)
.++++.++...+...++=.++|.+.+|+.+.
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~~ 35 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHRR 35 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 3455555555555556656667777665443
No 128
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=23.10 E-value=4.5e+02 Score=27.40 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=42.7
Q ss_pred HhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHHHH
Q 012295 125 LYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAA 193 (466)
Q Consensus 125 ~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~~~ 193 (466)
....+..+.+...|....++....... ..++..+-+..|.++.+++...+.+...++.++-.+.+..
T Consensus 411 ~~~~i~~FfiTsaDS~s~vl~~~ss~~--~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii~a 477 (537)
T COG1292 411 ALLVIAIFFVTSADSGSYVLAMISSRG--GEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAIITA 477 (537)
T ss_pred HHHHHHHHHhhccchHHHHHHHHhccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444556677888898888887543222 2333345566777777777777777776777665554443
No 129
>PLN02351 cytochromes b561 family protein
Probab=23.09 E-value=5.4e+02 Score=23.82 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=42.8
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCchHHHHHHHHHHHHHHHhhccccccc
Q 012295 268 KTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQP 338 (466)
Q Consensus 268 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 338 (466)
|+.+|.+....-..+++..++|+.. .|-++ ++...|+.+ -.+|+-...-.++.++-+..+..+..|
T Consensus 80 ~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~--~~~i~nlyS-LHSWlGl~tv~Lf~lQwv~Gf~~F~~P 145 (242)
T PLN02351 80 RKTKKSVHLWLQGLALASGVFGIWT--KFHGQ--DGIVANFYS-LHSWMGLICVSLFGAQWLTGFMSFWHR 145 (242)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH--HHhcc--cCCccchhH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5568888888877787777777766 44322 223344322 467887777778888887776554444
No 130
>PLN00148 potassium transporter; Provisional
Probab=21.51 E-value=1.1e+03 Score=26.00 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=39.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchh--HHH-----HHHHHHHHHHhhccccce
Q 012295 180 PDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLAD--KLW-----LAFQALGDIAFAYPYSII 252 (466)
Q Consensus 180 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~faf~~h~~ 252 (466)
.....-+.-..++-++.+.+..+. ++.+|.+.+++|.- +..+ +|.. .++ +.+..+|-++.|..|...
T Consensus 212 Q~~GT~kVg~~FgPIm~lWf~~i~-~iGiyni~~~~p~V--l~Al---nP~y~~~ff~~~~~~g~~~LGgV~L~iTGaEA 285 (785)
T PLN00148 212 QHCGTHRVAFMFAPIVIIWLLSIG-SIGLYNIIHWNPKI--IHAL---SPYYIIKFFRVTGKDGWISLGGILLSITGTEA 285 (785)
T ss_pred hccccHHHHhhhhhHHHHHHHHHH-HHHHHHHHhcCHHH--hhhc---CHHHHHHHHHhCCCceEEeecchheeccchhh
Confidence 334444555566766666555444 36788887764421 1111 1111 010 233466667667766654
Q ss_pred ehhhhcccCCCC
Q 012295 253 LLEIQDTLKSPP 264 (466)
Q Consensus 253 ~~~i~~~m~~p~ 264 (466)
++.+|-|-.
T Consensus 286 ---LyADlGHFg 294 (785)
T PLN00148 286 ---MFADLGHFT 294 (785)
T ss_pred ---hhhhccCCC
Confidence 456776553
No 131
>PLN02810 carbon-monoxide oxygenase
Probab=21.20 E-value=5.9e+02 Score=23.35 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=44.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCchHHHHHHHHHHHHHHHhhccccccc
Q 012295 268 KTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQP 338 (466)
Q Consensus 268 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 338 (466)
|+.+|.+....=..+++...+|+.....+-+ ...+.+-++ -.+|+-...-.++.+|-+..+-.+.+|
T Consensus 76 k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn--~~~i~nlyS--LHSWlGl~tv~Lf~lQw~~Gf~~Fl~P 142 (231)
T PLN02810 76 KEVKKLIHLVLHAIALILGIFGICAAFKNHN--ESGIANLYS--LHSWLGIGIISLYGIQWIYGFIVFFFP 142 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCceee--HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6777888888888888888888855444433 333333333 468877777777888877776555554
Done!