Query 012295
Match_columns 466
No_of_seqs 115 out of 1234
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:36:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.8 1E-16 3.5E-21 162.1 23.5 367 26-430 5-380 (445)
2 3gia_A Uncharacterized protein 99.6 2.8E-13 9.5E-18 136.8 31.6 240 27-297 4-248 (444)
3 4djk_A Probable glutamate/gamm 99.5 7.6E-12 2.6E-16 128.6 27.0 283 25-332 7-305 (511)
4 2jln_A MHP1; hydantoin, transp 98.7 3.9E-06 1.3E-10 85.4 26.1 154 26-197 22-176 (501)
5 3dh4_A Sodium/glucose cotransp 98.0 0.0028 9.6E-08 64.8 26.9 149 28-198 19-169 (530)
6 2xq2_A Sodium/glucose cotransp 97.7 0.023 7.9E-07 58.8 27.2 149 28-198 48-198 (593)
7 2a65_A Leutaa, Na(+):neurotran 71.1 88 0.003 31.2 25.3 107 33-146 11-122 (519)
8 3l1l_A Arginine/agmatine antip 49.6 1.8E+02 0.0061 27.7 13.9 49 98-146 259-307 (445)
9 2wsw_A BCCT family betaine/car 27.2 1.5E+02 0.005 29.5 7.5 68 126-193 417-485 (509)
10 4b4a_A TATC, SEC-independent p 26.2 3.3E+02 0.011 24.0 9.1 26 314-339 59-84 (249)
11 3gia_A Uncharacterized protein 26.0 3.2E+02 0.011 25.8 10.0 48 99-146 258-305 (444)
12 4ain_A Glycine betaine transpo 22.9 3.6E+02 0.012 26.9 9.4 164 23-206 88-283 (539)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.75 E-value=1e-16 Score=162.13 Aligned_cols=367 Identities=10% Similarity=0.003 Sum_probs=206.4
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
+++|+.+.++.+...+++++|+|++.+|...++.|.. +++..++.++.....+..+.|..... ++.| ...+..
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~-p~~G-----g~y~~~ 77 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD-PSPG-----GSYAYA 77 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT-----THHHHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC-CCCC-----CchhhH
Confidence 4567788999999999999999999999998888864 78888888899988888888876543 3232 577778
Q ss_pred HHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCch
Q 012295 106 KLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 185 (466)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l 185 (466)
++.+||+.++++.+..++.......++....++++..+++... . .+....+ .+..+++..+...+..|..
T Consensus 78 ~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~-~~~~~~~~~~in~~g~~~~ 147 (445)
T 3l1l_A 78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------D--PWVLTIT-CVVVLWIFVLLNIVGPKMI 147 (445)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-------S--HHHHHHH-HHHHHHHHHHHHHHCHHHH
T ss_pred HhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-------c--cHHHHHH-HHHHHHHHHHHHHhchHHH
Confidence 9999999999999999888877777777777776655433210 0 0000111 1111111222233445555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccCCCCc
Q 012295 186 EWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPP 265 (466)
Q Consensus 186 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~~ 265 (466)
.+++.+.....+...++ ..+......++ +....... ........++..++....|+|.|........+|+|||+
T Consensus 148 ~~~~~~~~~~~i~~~~~---~~i~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~- 221 (445)
T 3l1l_A 148 TRVQAVATVLALIPIVG---IAVFGWFWFRG-ETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK- 221 (445)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHTTSTTCCC-CCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH-
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHhCh-hhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-
Confidence 55555444433321111 11111111111 10001111 11112245677899999999999999999999999995
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhhhcccccccccc----ccccccccccCchHHHHHHHHHHHHHHHhhccccccchHH
Q 012295 266 ENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTP----GNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFA 341 (466)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~ 341 (466)
|+.+|++..+..++.++|....+......+.+.. +....-......+|...+..+...+....+.-......-+
T Consensus 222 --r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR 299 (445)
T 3l1l_A 222 --RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQ 299 (445)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999887765555543221 1111111110123455555666666555554222222222
Q ss_pred HHHHHHhh-hCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHc----cchHHHHHHhhhhhcchhhhh
Q 012295 342 FVERWFTR-KYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIF----PYFNQVLGVLGALNFWPLAIY 416 (466)
Q Consensus 342 ~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~va~~~----p~~~~i~~~~Ga~~~~~~~~i 416 (466)
.+...-.+ ..|+ ...+.++.+.| ..-..+..++..+ ..+.... ..++.+.++.+ ....+.|.
T Consensus 300 ~~~~~a~dg~lP~--~~~~~~~~~~P--------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~ 366 (445)
T 3l1l_A 300 TAKAAADDGLFPP--IFARVNKAGTP--------VAGLIIVGILMTI-FQLSSISPNATKEFGLVSSVSV--IFTLVPYL 366 (445)
T ss_dssp HHHHHHHTTSSCG--GGGCCCTTCCC--------HHHHHHHHHHHHH-HHHSTTSHHHHCCCHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHhCCCCcH--HHHhcCCCCCC--------HHHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHH--HHHHHHHH
Confidence 22222111 1231 11111112333 2222222221111 1111112 23566666554 33478899
Q ss_pred hhhHHHHHHhccCc
Q 012295 417 FPVEMYFVQKKIGA 430 (466)
Q Consensus 417 lP~~~~~~~~~~~~ 430 (466)
++.+.+++.+|+++
T Consensus 367 ~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 367 YTCAALLLLGHGHF 380 (445)
T ss_dssp HHHHHHHHHHSSSS
T ss_pred HHHHHHHHHhhcCc
Confidence 99999998876554
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.64 E-value=2.8e-13 Score=136.85 Aligned_cols=240 Identities=12% Similarity=0.015 Sum_probs=157.8
Q ss_pred ccccccHHHHHHHHHhhhhchhhhhhHHH-HHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHH
Q 012295 27 FERTGTICTALAHIITGVIGAGVLSLAWS-MAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAV 105 (466)
Q Consensus 27 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~ 105 (466)
++|+.+.++.....+++++|+|++..|.. .++.|. ..++.+++.+++.......+.|.....+. .| ...+..
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~-~G-----g~y~~~ 76 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS-NA-----GPIAFI 76 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TT-----THHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC-----cHHHhH
Confidence 46778999999999999999999998765 555666 67888899999999999999997665433 22 466888
Q ss_pred HHHhCCCc-hhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehh---hHHHHHHhhcCCC
Q 012295 106 KLYLGDKN-QKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLL---FGAVQVVMSQIPD 181 (466)
Q Consensus 106 ~~~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~i~~~pl~~~~~ 181 (466)
++.+||+. ...+.+..++........+....++++..+.+.. .. .++..+ ..+++..+...+.
T Consensus 77 ~~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~in~~g 143 (444)
T 3gia_A 77 HKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAP-------IN------TFNIAITEIGIVAFFTALNFFG 143 (444)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------CC------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------Cc------hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999973 2234566666666677777777788777665320 00 111111 1112222233344
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhhcccC
Q 012295 182 FHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 261 (466)
Q Consensus 182 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~ 261 (466)
.|...+++.+.....+...++.++..+ ...++. +..+.....++.+++.++....|+|.|.+.+....+|+|
T Consensus 144 ~~~~~~~~~~~~~~~i~~~~~~ii~~~---~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k 215 (444)
T 3gia_A 144 SKAVGRAEFFIVLVKLLILGLFIFAGL---ITIHPS-----YVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIE 215 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCGG-----GTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcChh-----hcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHcc
Confidence 555555555554443332222222222 221111 111111223345678888999999999999999999999
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHhhhhhcccccc
Q 012295 262 SPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG 297 (466)
Q Consensus 262 ~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg 297 (466)
||+ |+.+|++..+..++.++|....+......+
T Consensus 216 ~P~---r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 216 NPK---KNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp SHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred Ccc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 995 779999999999999999987766544443
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.49 E-value=7.6e-12 Score=128.61 Aligned_cols=283 Identities=11% Similarity=0.007 Sum_probs=156.3
Q ss_pred CCccccccHHHHHHHHHhhhhchhhhhhHHHHHhhChhhHHHHHHHHHHHH-HHHHHHHHhhcc--CCCCCcCccccccH
Q 012295 25 KPFERTGTICTALAHIITGVIGAGVLSLAWSMAQLGWIAGPLCMIAFASVT-IVSSSLLCDCYR--FPDPEVGPNRIRSF 101 (466)
Q Consensus 25 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~--~~~~~~g~~~~~~y 101 (466)
.+.+|+.+.++.+...++.++| +.++|. .+..|.. .++..++.+++. ...+..+.|... ... .| ..
T Consensus 7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P--~G-----G~ 75 (511)
T 4djk_A 7 TGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE--EG-----GV 75 (511)
T ss_dssp -----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----------CH
T ss_pred CccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC--CC-----Ch
Confidence 3457788999999999999986 567775 4566654 344444444443 336777777655 433 33 46
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceeh-hhHHHHHHhhcCC
Q 012295 102 TQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHML-LFGAVQVVMSQIP 180 (466)
Q Consensus 102 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~pl~~~~ 180 (466)
...+++.+||+.++++.+..++.......++....++.+..++... .-+ .. ....+.+ +..+++..+...+
T Consensus 76 y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~--~~----~~~~~~~~~~~~~~~~~in~~ 147 (511)
T 4djk_A 76 FAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWP--ALN--ED----PITKTIAALIILWALALTQFG 147 (511)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCG--GGT--SC----SSHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccc--cC----cHHHHHHHHHHHHHHHHHHHh
Confidence 7788999999999999999888887777777776666664432100 000 00 0011111 1112222233345
Q ss_pred CCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccc--cccccCCCCcchhHHHHHHHHHHHHHhhccccceehhhh
Q 012295 181 DFHNMEWLSVIAAIM-SFAYSFIGFGLGFAKVIENGRIK--GSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQ 257 (466)
Q Consensus 181 ~l~~l~~~s~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~ 257 (466)
..+...+++.+.... .+...++.++..+.....+++.. .+.... .+.....+.+.++...+|+|.|........
T Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a 224 (511)
T 4djk_A 148 GTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTF---FPDFSKVGTLVVFVAFILSYMGVEASATHV 224 (511)
T ss_dssp CSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CC---CCCTTSTTTTTTHHHHHHHHTTGGGGTGGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccc---CCCcccchHHHHHHHHHHHHhhHHHHHHHH
Confidence 566666666554332 12111122222222211111110 011111 011111123356778899999999999999
Q ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHhhhhhccccccccccc---cc---ccc-ccccC--chHHHHHHHHHHHHHH
Q 012295 258 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPG---NL---LTG-FGFYE--PYWLIDLANACIVLHL 328 (466)
Q Consensus 258 ~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~---~i---l~~-~~~~~--~~~~~~~~~~~~~i~~ 328 (466)
+|+|||+ |+.+|++..+..++.++|+...+......+++..+ .. ... +.... ..|...+..+...+..
T Consensus 225 ~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 301 (511)
T 4djk_A 225 NEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGV 301 (511)
T ss_dssp SSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHH
T ss_pred HhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 9999996 88999999999999999998877766655543211 11 011 11112 2455666666666666
Q ss_pred Hhhc
Q 012295 329 VGGY 332 (466)
Q Consensus 329 ~~s~ 332 (466)
+.+.
T Consensus 302 ~~~~ 305 (511)
T 4djk_A 302 LAEI 305 (511)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.74 E-value=3.9e-06 Score=85.42 Aligned_cols=154 Identities=16% Similarity=0.076 Sum_probs=96.4
Q ss_pred CccccccHHHHHHHHHhhhhchhhhhhHHHHHh-hChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHH
Q 012295 26 PFERTGTICTALAHIITGVIGAGVLSLAWSMAQ-LGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQA 104 (466)
Q Consensus 26 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~f~~-~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~ 104 (466)
+++|+.++++-...-++..++.+-+.+...+.. .++.-+++..++-.++...-..++.... ++.| .+|.++
T Consensus 22 ~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G----~~~G----l~~~v~ 93 (501)
T 2jln_A 22 YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAA----IRWG----INFTVA 93 (501)
T ss_dssp GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHH----HHHC----CCHHHH
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHH----hhcC----CChhhh
Confidence 345666777666666777766666666554443 2334444444444444433333333322 1222 579999
Q ss_pred HHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCc
Q 012295 105 VKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHN 184 (466)
Q Consensus 105 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~ 184 (466)
.|..||+++..+..++..+.++|.........++.+..++.... +. .+...+.+++.++.+++.+. .++.
T Consensus 94 ~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g~--------~~~~v~~~i~~~l~~~~~~~-G~~~ 163 (501)
T 2jln_A 94 ARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-GF--------TNLPLWIVIFGAIQVVTTFY-GITF 163 (501)
T ss_dssp TTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC--------CCHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred hHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cc--------chHHHHHHHHHHHHHHHHHh-CHHH
Confidence 99999999999999999999999998888889999888765321 10 00123445566666666653 4777
Q ss_pred hhHHHHHHHHHHH
Q 012295 185 MEWLSVIAAIMSF 197 (466)
Q Consensus 185 l~~~s~~~~~~~~ 197 (466)
++++..+.....+
T Consensus 164 i~~~~~~~~p~~~ 176 (501)
T 2jln_A 164 IRWMNVFASPVLL 176 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665544
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.02 E-value=0.0028 Score=64.79 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=81.8
Q ss_pred cccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHH
Q 012295 28 ERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVK 106 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 106 (466)
.|+.+++...+.+..+.+++. ++++|....+.|+........ .++.....+..+....++ .+..|..|.-+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~-------~~~~T~~e~l~ 90 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE-------KGIYTIPEFVE 90 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHH-------TTCCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHH-------cCCccHHHHHH
Confidence 456677778888877777775 888999877788764321111 111111222222332222 23689999999
Q ss_pred HHhCCCchhhHHHHHHHHH-hhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCch
Q 012295 107 LYLGDKNQKVCGIFVQESL-YGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 185 (466)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~-~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l 185 (466)
+-||++.+.+..+...+.. +....+-+...+..++.+++ ++....+++.++++.......-++..
T Consensus 91 ~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~aV 156 (530)
T 3dh4_A 91 KRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAV 156 (530)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHHHHTTC------C
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcchHHH
Confidence 9999988877766544322 22223333333444444432 22233345555566666777888888
Q ss_pred hHHHHHHHHHHHH
Q 012295 186 EWLSVIAAIMSFA 198 (466)
Q Consensus 186 ~~~s~~~~~~~~~ 198 (466)
.+.-.+-.+.++.
T Consensus 157 ~~TD~iQ~~im~~ 169 (530)
T 3dh4_A 157 VWTDVIQVFFLVL 169 (530)
T ss_dssp CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887777766554
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.68 E-value=0.023 Score=58.80 Aligned_cols=149 Identities=13% Similarity=0.128 Sum_probs=80.8
Q ss_pred cccccHHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHH
Q 012295 28 ERTGTICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIAFASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVK 106 (466)
Q Consensus 28 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 106 (466)
.|+.+++.....+..+.+++. .++.|....+.|+......+.. ++.....+..+....++ .+..|..|.-+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r-------~~~~T~~e~l~ 119 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE-------KGIYTIPEFVE 119 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHH-------TTCCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHh-------CCCCCcHHHHH
Confidence 456677777788877777664 7889988777887533221111 11111112222322222 23689999999
Q ss_pred HHhCCCchhhHHHHHHHH-HhhhHHHHHHHhhhhHHHHHhhhcccCCCCCCCcccCCcceehhhHHHHHHhhcCCCCCch
Q 012295 107 LYLGDKNQKVCGIFVQES-LYGAGITYTFTTANCLRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 185 (466)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~-~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l 185 (466)
+-||++.+.+..+...+. .+......+...+..++.+++ ++....+++.++++.......-++..
T Consensus 120 ~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~av 185 (593)
T 2xq2_A 120 KRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAV 185 (593)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHTTC---C
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHHHHHhcchHHH
Confidence 999988887776554432 222233333344555555543 12223344555555666777778888
Q ss_pred hHHHHHHHHHHHH
Q 012295 186 EWLSVIAAIMSFA 198 (466)
Q Consensus 186 ~~~s~~~~~~~~~ 198 (466)
.+.-.+-.+..+.
T Consensus 186 ~~TD~iQ~iiml~ 198 (593)
T 2xq2_A 186 VWTDVIQVFFLVL 198 (593)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8777666655543
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=71.13 E-value=88 Score=31.24 Aligned_cols=107 Identities=14% Similarity=0.021 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhhhchh-hhhhHHHHHhhChhhHHHHHHH----HHHHHHHHHHHHHhhccCCCCCcCccccccHHHHHHH
Q 012295 33 ICTALAHIITGVIGAG-VLSLAWSMAQLGWIAGPLCMIA----FASVTIVSSSLLCDCYRFPDPEVGPNRIRSFTQAVKL 107 (466)
Q Consensus 33 ~~~~~~~l~~~~iG~G-iL~lP~~f~~~G~~~g~i~l~~----~~~~~~~t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 107 (466)
...-++..++..+|-| +.=.||...+-|-..-++-.++ +++=..+.=..+.|-..+. .+ .+-.+.-++
T Consensus 11 r~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~-~r------~~~i~a~~~ 83 (519)
T 2a65_A 11 RLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQ-GH------GTTPAIFYL 83 (519)
T ss_dssp HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-TC------CSHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhc-cC------CCHHHHHHH
Confidence 4466677789999999 8889999888874432322222 2222222222333310001 11 122223333
Q ss_pred HhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh
Q 012295 108 YLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKS 146 (466)
Q Consensus 108 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 146 (466)
...++....+.+...+..+..++-|.+..+-.+..+...
T Consensus 84 l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s 122 (519)
T 2a65_A 84 LWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122 (519)
T ss_dssp HSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322211222444455555556666777766666666543
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=49.56 E-value=1.8e+02 Score=27.72 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=43.6
Q ss_pred cccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh
Q 012295 98 IRSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKS 146 (466)
Q Consensus 98 ~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 146 (466)
.....+..+..+|+++..++.+...+..++...+++...++.+..+.++
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp TCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3568899999999999999999999999999999999999988887764
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=27.18 E-value=1.5e+02 Score=29.47 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=42.5
Q ss_pred hhhHHHHHHHhhhhHHHHHhhhcccCC-CCCCCcccCCcceehhhHHHHHHhhcCCCCCchhHHHHHHH
Q 012295 126 YGAGITYTFTTANCLRAIQKSNCYHRE-GHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAA 193 (466)
Q Consensus 126 ~g~~~~y~i~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l~~l~~~s~~~~ 193 (466)
...++.|.++..|+...+......+.. +++++..+-+.+|.++.+.+...|.....++.++..+.++.
T Consensus 417 iil~~~FfvTSaDS~s~vi~~~ss~g~~~~~~p~~~~rifW~v~~g~va~~LL~~ggl~aLQ~~~ii~a 485 (509)
T 2wsw_A 417 FILCFIATVTLINACSYTLAMSTCRSMKEGADPPLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIAGG 485 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBCCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344557888999999888887654431 12344445566787777777666665555666655444443
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=26.21 E-value=3.3e+02 Score=23.99 Aligned_cols=26 Identities=8% Similarity=-0.007 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHhhccccccch
Q 012295 314 YWLIDLANACIVLHLVGGYQIFSQPV 339 (466)
Q Consensus 314 ~~~~~~~~~~~~i~~~~s~pl~~~p~ 339 (466)
+....-.++.....+..+.|.....+
T Consensus 59 e~f~~~lkvs~~~g~~~a~P~ilyQi 84 (249)
T 4b4a_A 59 EPLFILIKISLAVGFIIASPVILYQF 84 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999874443
No 11
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=25.99 E-value=3.2e+02 Score=25.84 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=40.7
Q ss_pred ccHHHHHHHHhCCCchhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhh
Q 012295 99 RSFTQAVKLYLGDKNQKVCGIFVQESLYGAGITYTFTTANCLRAIQKS 146 (466)
Q Consensus 99 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 146 (466)
....+..+..+|+++..++.+...+..++...+.+...++.+..+..+
T Consensus 258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 346778888889888888999889999999999999999988888765
No 12
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=22.85 E-value=3.6e+02 Score=26.88 Aligned_cols=164 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred CCCCccccccHHHHHHHHHhhhhchhhh-------------------------hhHHHHHhhChhhHHHHHHHHHHHHHH
Q 012295 23 SGKPFERTGTICTALAHIITGVIGAGVL-------------------------SLAWSMAQLGWIAGPLCMIAFASVTIV 77 (466)
Q Consensus 23 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL-------------------------~lP~~f~~~G~~~g~i~l~~~~~~~~~ 77 (466)
.++++++.-|.++-...++.+-+|+|++ ++-+.|=+-|.- -.+.|
T Consensus 88 G~~d~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~----------~WAiY 157 (539)
T 4ain_A 88 GRIDEAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLH----------PWAIY 157 (539)
T ss_dssp SCTTCCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHH----------HHHHH
T ss_pred CCCCCCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChH----------HHHHH
Q ss_pred HHHHHHhhccCCCCCcCccccccHHHHHHHHhCCC-----chhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhhcccC-
Q 012295 78 SSSLLCDCYRFPDPEVGPNRIRSFTQAVKLYLGDK-----NQKVCGIFVQESLYGAGITYTFTTANCLRAIQKSNCYHR- 151 (466)
Q Consensus 78 t~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~-----~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~- 151 (466)
+..-+.-++..++. ++..+.++..+-.+|++ .+.++|++-.+...+....-+-+...++..-++....-+
T Consensus 158 av~glalaY~~yrk----~~pl~iss~l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~ 233 (539)
T 4ain_A 158 AIVGLAIAYSTFRV----GRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIED 233 (539)
T ss_dssp HHHHHHHHCCCCCT----CCCSCTTGGGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHhcC----CCCCcHHHHhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCC
Q ss_pred CCCCCCcccCCcceehhhHHHHHHhhcCCCC-CchhHHHHHHHHHHHHHHHHHHHH
Q 012295 152 EGHNAPCAYGDTKHMLLFGAVQVVMSQIPDF-HNMEWLSVIAAIMSFAYSFIGFGL 206 (466)
Q Consensus 152 ~~~~~~~~~~~~~~~~i~~i~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~i~~~~ 206 (466)
+ ....+..+++...++..++-..-+ |-.+++|.+...+.+...+.+++.
T Consensus 234 ~------~~~~qi~ii~vit~i~~~Sa~sGl~kGIk~LS~~N~~La~~Ll~fvli~ 283 (539)
T 4ain_A 234 P------SDWTIVGIVSVLTLAFIFSAISGVGKGIQYLSNANMVLAALLAIFVFVV 283 (539)
T ss_dssp C------STTTTTHHHHHHHHHHHHHHHC---CCHHHHGGGHCCCCCHHHHHHHHH
T ss_pred C------ChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!