Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>012298
MAKRPDPDDDDDFSELYKEYTGPPGSMVATSQEKAKANKRSLAGSDEEEEPRDPNAVPTD
FTSREAKVWEAKSKATERNWKKRKEEEMICKICGESGHFTQGCPSTLGANRKSQDFFERV
AARDKHVRALFTEKVIQRIEKDISCKIKMDEKFIIVSGKDRLILSKGVDAVHKIIKEEGD
QRGTSSSHKSKSRSPEQSPVGTQLRRSESQRSHPVSHNASHFHQRICRQDKVVEDRVRED
VQKFSRGSPQARAYGSDGARGRSSHSKSPGRPPYASNLHNSYDGHNQSMGGYRNDGWDIE
RRGSDMQSGHQFEYPAFPKTLDELELDYTREAMELGRIRDKEEDEENYKHRETIREMRES
YMKKLTQVRAMHAKQWEEFLQLDGQRHQHQAREQMSASGFGGYKQHNYSSYDGSSTNSEY
AGTSYPMDSRGRYPNPMETYPSRAHDTHGGFQRQRREEFGKAYNRY

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  012298
        (466 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2096004 - symbol:AT3G62330 species:3702 "Arabi...  1370  4.9e-140  1


>TAIR|locus:2096004 [details] [associations]
            symbol:AT3G62330 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR001878 PROSITE:PS50158 SMART:SM00343 EMBL:CP002686
            GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AL162507
            EMBL:BT030463 IPI:IPI00523441 PIR:T48025 RefSeq:NP_191792.1
            UniGene:At.34133 PRIDE:Q9LZQ7 EnsemblPlants:AT3G62330.1
            GeneID:825406 KEGG:ath:AT3G62330 TAIR:At3g62330
            HOGENOM:HOG000070567 InParanoid:Q9LZQ7 OMA:CKIKMEE PhylomeDB:Q9LZQ7
            ProtClustDB:CLSN2684129 Genevestigator:Q9LZQ7 Uniprot:Q9LZQ7
        Length = 479

 Score = 1370 (487.3 bits), Expect = 4.9e-140, P = 4.9e-140
 Identities = 284/470 (60%), Positives = 335/470 (71%)

Query:    13 FSELYKEYTGPPGSMVATS-QEKAKANK-RSLAGSDEEEEPR-DPNAVPTDFTSREAKVW 69
             FSE+YKEYTGP  ++   + Q+K K  K RS    DEEEE   DPN+VPTDFTSREAKVW
Sbjct:    14 FSEIYKEYTGPASAVTNNNIQDKDKPVKQRSEERCDEEEEQLPDPNSVPTDFTSREAKVW 73

Query:    70 EAKSKATERNWKKRKEEEMICKICGESGHFTQGCPSTLGANRKSQDFFERVAARDKHVRA 129
             EAKSKATERNWKKRKEEEMICKICGESGHFTQGCPSTLGANRKSQ+FFERV ARD +VR 
Sbjct:    74 EAKSKATERNWKKRKEEEMICKICGESGHFTQGCPSTLGANRKSQEFFERVPARDNNVRV 133

Query:   130 LFTEKVIQRIEKDISCKIKMDEKFIIVSGKDRLILSKGVDAVHKIIKEEGDQRGTXXXXX 189
             LFTEKV++ IE++ SCKIK+DEKFIIVSGKDRLIL KGVDAVHK+ KE+G+ + +     
Sbjct:   134 LFTEKVMESIERETSCKIKLDEKFIIVSGKDRLILRKGVDAVHKV-KEDGEMKSSSVSHR 192

Query:   190 XXXXXPEQSPVG-TQLRRSESQRSHPVSHNASHFHQR------ICXXXXXXXXXXXXXXX 242
                  P ++ VG ++ R SE QR    SH +S F +R                       
Sbjct:   193 SRSRSPRRTSVGPSRARNSEPQRQQLPSHGSSSFPERSGRQDKFVDNRFREETRVRENQR 252

Query:   243 XFSRGSPQARAYGSDGARGRSSHSKSPGRPPYASNLHNSYDGHNQSMGGYRNDGWDIERR 302
                RGSPQA  YGSD AR RS+HSKSPGRP Y S     YD     + GYR++ WD ER 
Sbjct:   253 NVPRGSPQA--YGSDRARSRSTHSKSPGRPRY-SGWDKPYDRQKPEVSGYRSERWDQERM 309

Query:   303 G--SDMQSGHQFEYPAFPKTLDELELDYTREAMELGRIRDKEEDEENYKHRETIREMRES 360
             G  SD+Q  HQFE P FP+TL+ELEL+YTR+A+EL + RDKEEDEEN KHRETIRE+RES
Sbjct:   310 GGSSDIQVSHQFERPPFPQTLEELELEYTRDALELEKKRDKEEDEENNKHRETIRELRES 369

Query:   361 YMKKLTQVRAMHAKQWEEFLQLDGQRHQHQAREQMSASGFGGYKQHN-YSSYD-GSSTNS 418
             YMKKL  +R M+AKQW++FLQLD QR Q QAR+Q S   +G Y+Q   Y+ +D G S+N 
Sbjct:   370 YMKKLAGLRGMNAKQWDDFLQLDAQRRQQQARQQNSGLSYGNYRQFPPYAEFDDGYSSNP 429

Query:   419 E-YAGTSYPMDSRGRYPNPMETYPSRAHDT-HGGFQRQRREEFGKAYNRY 466
               Y G + PMDS+GRYPN  + Y SR  D  +GGFQRQRREE+GKAYNRY
Sbjct:   430 PPYGGNNMPMDSKGRYPNHGDNYSSRHQDNNYGGFQRQRREEYGKAYNRY 479


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.129   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      466       432   0.00086  118 3  11 23  0.46    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  288 KB (2149 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  47.31u 0.19s 47.50t   Elapsed:  00:00:02
  Total cpu time:  47.31u 0.19s 47.50t   Elapsed:  00:00:02
  Start:  Fri May 10 03:33:36 2013   End:  Fri May 10 03:33:38 2013

Back to top