BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012298
         (466 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IPW|A Chain A, Crystal Structure Of Hydrolase Tatd Family Protein From
           Entamoeba Histolytica
          Length = 325

 Score = 29.3 bits (64), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 281 SYDGHNQSMGGYRNDGWDIERRGSDMQS 308
            +DG  + M    N+GWDI   G+ +QS
Sbjct: 200 CFDGTEEEMNQILNEGWDIGVTGNSLQS 227


>pdb|2QUF|A Chain A, Crystal Structure Of Transcription Factor Axxa-pf0095 From
           Pyrococcus Furiosus
 pdb|2QUF|B Chain B, Crystal Structure Of Transcription Factor Axxa-pf0095 From
           Pyrococcus Furiosus
          Length = 232

 Score = 28.5 bits (62), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 46/82 (56%), Gaps = 10/82 (12%)

Query: 318 PKTLDELELDYTREAMELGRIRDKEEDEENYKHRETIREMRESYMKKL---TQVRAMHAK 374
           P TL E+  D+ +   EL ++ +  +  E+Y+    +R+++E+Y+K++   TQ+  +H  
Sbjct: 115 PSTLKEMITDFIKANKELEKVLEAFKTIESYRS-SLMRKIKEAYLKEIGDMTQLAILH-- 171

Query: 375 QWEEFLQLDGQRHQHQAREQMS 396
               +L L+G+    +  ++++
Sbjct: 172 ----YLLLNGRATVEELSDRLN 189


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,943,748
Number of Sequences: 62578
Number of extensions: 565445
Number of successful extensions: 836
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 835
Number of HSP's gapped (non-prelim): 5
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)