BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012298
         (466 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1
          Length = 947

 Score = 35.4 bits (80), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 90  CKICGESGHFTQGCPSTLGANRKSQDF 116
           C +CG++GHF   CP   G+N  + D 
Sbjct: 265 CFVCGQTGHFASDCPGKSGSNNAAADI 291


>sp|Q6BSP4|BBP_DEBHA Branchpoint-bridging protein OS=Debaryomyces hansenii (strain ATCC
           36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
           GN=BBP PE=3 SV=2
          Length = 518

 Score = 35.0 bits (79), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 62  TSREAKVWEAKSKATERNWKKRKEEEMICKICGESGHFTQGC 103
           T RE K +  +++ + R+       +++CK CG+ GHF + C
Sbjct: 293 TLRETKPYNPETQQSRRSRPGLDVSQLVCKSCGKVGHFARDC 334


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.128    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,976,753
Number of Sequences: 539616
Number of extensions: 8265600
Number of successful extensions: 25014
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 24726
Number of HSP's gapped (non-prelim): 450
length of query: 466
length of database: 191,569,459
effective HSP length: 121
effective length of query: 345
effective length of database: 126,275,923
effective search space: 43565193435
effective search space used: 43565193435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)