Query 012298
Match_columns 466
No_of_seqs 33 out of 35
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 06:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k1g_A SF1-BO isoform; splicin 95.0 0.0077 2.6E-07 51.9 1.7 46 132-177 31-99 (131)
2 2yqr_A KIAA0907 protein; struc 95.0 0.011 3.7E-07 50.7 2.5 51 127-177 30-99 (119)
3 1x4n_A FAR upstream element bi 94.8 0.014 4.8E-07 46.5 2.7 62 116-178 15-85 (92)
4 1x4m_A FAR upstream element bi 94.6 0.0061 2.1E-07 48.8 0.1 64 114-178 13-87 (94)
5 2opv_A KHSRP protein; KH domai 94.4 0.011 3.9E-07 46.2 1.1 52 125-177 23-85 (85)
6 2cte_A Vigilin; K homology typ 94.2 0.018 6E-07 46.2 1.8 55 124-179 25-86 (94)
7 1we8_A Tudor and KH domain con 94.2 0.014 4.9E-07 47.4 1.4 54 124-178 23-87 (104)
8 2p2r_A Poly(RC)-binding protei 93.9 0.0099 3.4E-07 45.5 -0.1 53 125-178 14-75 (76)
9 2ctj_A Vigilin; K homology typ 93.8 0.042 1.4E-06 44.8 3.3 55 125-180 26-88 (95)
10 1dtj_A RNA-binding neurooncolo 93.7 0.015 5.2E-07 44.1 0.7 51 126-177 13-75 (76)
11 1j5k_A Heterogeneous nuclear r 93.7 0.027 9.4E-07 44.5 2.1 55 124-179 22-85 (89)
12 1wvn_A Poly(RC)-binding protei 93.7 0.018 6E-07 44.7 0.9 54 125-179 15-77 (82)
13 1zzk_A Heterogeneous nuclear r 93.5 0.034 1.2E-06 43.3 2.3 55 125-180 16-79 (82)
14 2hh2_A KH-type splicing regula 93.4 0.014 4.8E-07 47.9 0.0 54 125-179 16-81 (107)
15 2axy_A Poly(RC)-binding protei 93.1 0.017 5.8E-07 44.3 0.1 52 125-177 14-72 (73)
16 2hh3_A KH-type splicing regula 92.9 0.042 1.4E-06 45.5 2.1 54 124-178 19-81 (106)
17 1ec6_A RNA-binding protein NOV 92.8 0.054 1.8E-06 42.4 2.5 55 126-181 13-79 (87)
18 1dsq_A Nucleic acid binding pr 92.0 0.039 1.3E-06 35.9 0.7 20 88-107 3-22 (26)
19 2ctk_A Vigilin; K homology typ 91.9 0.056 1.9E-06 44.4 1.7 51 126-177 27-84 (104)
20 2ctm_A Vigilin; K homology typ 91.5 0.066 2.2E-06 43.4 1.6 58 124-182 25-90 (95)
21 2bl5_A MGC83862 protein, quaki 90.4 0.085 2.9E-06 46.5 1.4 45 132-176 26-100 (140)
22 3krm_A Insulin-like growth fac 89.5 0.17 5.7E-06 42.7 2.5 57 124-181 93-160 (163)
23 1u6p_A GAG polyprotein; MLV, A 89.1 0.068 2.3E-06 40.9 -0.2 27 80-106 16-42 (56)
24 1a6b_B Momulv, zinc finger pro 89.0 0.11 3.6E-06 37.6 0.7 21 87-107 10-30 (40)
25 2jzx_A Poly(RC)-binding protei 88.9 0.17 5.8E-06 42.5 2.1 53 124-177 97-159 (160)
26 2jvz_A KH type-splicing, FAR u 88.5 0.17 6E-06 42.2 1.9 53 124-177 99-160 (164)
27 2bl6_A Nucleocapsid protein P1 88.0 0.13 4.3E-06 35.2 0.6 18 88-105 20-37 (37)
28 1j4w_A FUSE binding protein; s 87.7 0.22 7.5E-06 42.6 2.0 52 126-178 13-73 (174)
29 2ctl_A Vigilin; K homology typ 87.5 0.18 6.2E-06 40.8 1.3 55 124-179 25-89 (97)
30 2jzx_A Poly(RC)-binding protei 87.0 0.11 3.9E-06 43.6 -0.1 54 124-178 13-73 (160)
31 2a51_A Nucleocapsid protein; s 87.0 0.18 6E-06 34.9 0.8 18 88-105 22-39 (39)
32 2ysa_A Retinoblastoma-binding 86.7 0.2 6.7E-06 38.3 1.0 20 87-106 7-26 (55)
33 1cl4_A Protein (GAG polyprotei 86.5 0.24 8E-06 36.8 1.4 21 88-108 31-51 (60)
34 2jvz_A KH type-splicing, FAR u 86.0 0.22 7.6E-06 41.6 1.1 51 126-177 12-73 (164)
35 1nc8_A Nucleocapsid protein; H 85.8 0.21 7.1E-06 33.0 0.7 19 88-106 7-25 (29)
36 2anr_A Neuro-oncological ventr 85.5 0.35 1.2E-05 41.4 2.1 58 119-177 107-175 (178)
37 1vig_A Vigilin; RNA-binding pr 84.7 0.14 4.8E-06 39.1 -0.6 35 126-160 15-56 (71)
38 2anr_A Neuro-oncological ventr 84.3 0.36 1.2E-05 41.3 1.7 53 124-177 14-78 (178)
39 1a1t_A Nucleocapsid protein; s 84.1 0.25 8.5E-06 36.1 0.5 18 88-105 34-51 (55)
40 2a51_A Nucleocapsid protein; s 83.6 0.29 9.9E-06 33.8 0.6 18 89-106 2-19 (39)
41 2ihx_A Nucleocapsid (NC) prote 83.2 0.28 9.6E-06 36.9 0.5 21 87-107 30-50 (61)
42 2ec7_A GAG polyprotein (PR55GA 83.2 0.27 9.3E-06 35.5 0.4 18 88-105 28-45 (49)
43 3ts2_A Protein LIN-28 homolog 82.2 0.39 1.3E-05 41.9 1.0 26 87-112 119-144 (148)
44 2cqf_A RNA-binding protein LIN 81.2 0.42 1.4E-05 36.3 0.8 19 88-106 30-48 (63)
45 1a1t_A Nucleocapsid protein; s 80.3 0.54 1.8E-05 34.3 1.1 22 85-106 10-31 (55)
46 1j4w_A FUSE binding protein; s 79.9 0.56 1.9E-05 40.1 1.2 35 124-158 112-158 (174)
47 2li8_A Protein LIN-28 homolog 79.3 0.49 1.7E-05 37.4 0.6 20 88-107 47-66 (74)
48 2ec7_A GAG polyprotein (PR55GA 79.2 0.49 1.7E-05 34.2 0.6 19 88-106 7-25 (49)
49 2bl6_A Nucleocapsid protein P1 78.3 0.54 1.8E-05 32.1 0.5 18 89-106 2-19 (37)
50 2dgr_A Ring finger and KH doma 77.6 0.68 2.3E-05 36.8 1.0 51 124-175 18-74 (83)
51 3nyb_B Protein AIR2; polya RNA 77.6 0.48 1.6E-05 38.3 0.1 19 88-106 6-24 (83)
52 2lli_A Protein AIR2; RNA surve 77.5 0.51 1.7E-05 39.1 0.2 23 84-106 1-23 (124)
53 3krm_A Insulin-like growth fac 77.3 1.1 3.7E-05 37.7 2.2 52 126-178 13-74 (163)
54 3u1k_A Polyribonucleotide nucl 77.0 0.62 2.1E-05 49.2 0.7 50 126-175 577-629 (630)
55 2ihx_A Nucleocapsid (NC) prote 76.7 0.54 1.8E-05 35.3 0.1 20 88-107 5-24 (61)
56 2li8_A Protein LIN-28 homolog 74.7 0.81 2.8E-05 36.1 0.7 23 84-106 21-43 (74)
57 2e3u_A PH-DIM2P, hypothetical 74.2 1.2 4.2E-05 41.1 1.9 52 124-175 42-101 (219)
58 2lli_A Protein AIR2; RNA surve 71.0 1.2 4.2E-05 36.8 1.0 21 86-106 104-124 (124)
59 2cpq_A FragIle X mental retard 70.6 1.4 4.7E-05 36.4 1.2 47 118-164 17-68 (91)
60 1cl4_A Protein (GAG polyprotei 70.3 0.9 3.1E-05 33.6 0.0 20 89-108 3-22 (60)
61 2cqf_A RNA-binding protein LIN 67.4 1.4 4.7E-05 33.4 0.5 19 88-106 8-26 (63)
62 2e3u_A PH-DIM2P, hypothetical 66.6 2.4 8.3E-05 39.2 2.0 45 132-177 147-191 (219)
63 3nyb_B Protein AIR2; polya RNA 63.3 1.4 4.8E-05 35.6 -0.2 21 86-106 45-65 (83)
64 3ts2_A Protein LIN-28 homolog 57.2 3 0.0001 36.3 0.8 20 87-106 97-116 (148)
65 1tua_A Hypothetical protein AP 52.7 8 0.00028 35.3 2.9 53 124-176 12-72 (191)
66 1tua_A Hypothetical protein AP 37.8 12 0.0004 34.2 1.5 43 132-176 116-159 (191)
67 4aid_A Polyribonucleotide nucl 36.9 5.1 0.00018 43.1 -1.1 50 126-175 580-632 (726)
68 2kn0_A FN14; tweak, TNF recept 36.2 10 0.00034 30.4 0.7 23 85-107 16-40 (66)
69 2jo8_A Serine/threonine-protei 34.1 57 0.0019 25.0 4.5 30 320-364 11-40 (51)
70 2hqh_E Restin; beta/BETA struc 33.0 8.5 0.00029 26.2 -0.2 19 88-106 4-22 (26)
71 1jad_A PLC-beta, phospholipase 31.5 1.3E+02 0.0044 29.0 7.6 38 350-389 72-109 (251)
72 3umh_A Amyloid beta A4 protein 27.1 1.8E+02 0.0062 27.5 7.6 63 319-381 25-87 (211)
73 4hpq_C ATG17, KLTH0D15642P; au 26.1 1.6E+02 0.0054 29.9 7.5 32 351-382 352-383 (413)
74 3nr1_A HD domain-containing pr 22.8 2.1E+02 0.007 25.3 6.8 54 318-372 67-130 (178)
75 3k66_A Beta-amyloid-like prote 21.1 3.6E+02 0.012 25.9 8.5 61 321-381 22-89 (239)
76 3nqw_A CG11900; stringent resp 20.8 1.3E+02 0.0043 26.7 5.0 55 318-373 69-133 (179)
77 3oja_B Anopheles plasmodium-re 20.7 3.3E+02 0.011 26.6 8.4 32 331-362 463-494 (597)
78 3pmr_A Amyloid-like protein 1; 20.6 3.1E+02 0.011 26.0 7.9 63 319-381 32-94 (219)
79 4gl0_A LMO0810 protein; struct 20.1 31 0.0011 30.8 1.0 19 132-150 23-41 (333)
No 1
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.01 E-value=0.0077 Score=51.94 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=41.0
Q ss_pred hHHHHHHhhhccccccccccc-----------------------eEEeccCcceeeecchhhHHHHHHh
Q 012298 132 TEKVIQRIEKDISCKIKMDEK-----------------------FIIVSGKDRLILSKGVDAVHKIIKE 177 (466)
Q Consensus 132 te~vi~~iEkd~gckikm~ek-----------------------f~~vsgkDRl~l~kgvdaVhk~i~e 177 (466)
.+++|.+||+++||||.+.++ .|.|++.|.-.|.+++.-|++|+++
T Consensus 31 ~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 31 RGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQ 99 (131)
T ss_dssp SSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 789999999999999999652 7889999999999999999999854
No 2
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.98 E-value=0.011 Score=50.65 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=42.7
Q ss_pred hhhhh--hHHHHHHhhhcccccccccc-----------------ceEEeccCcceeeecchhhHHHHHHh
Q 012298 127 VRALF--TEKVIQRIEKDISCKIKMDE-----------------KFIIVSGKDRLILSKGVDAVHKIIKE 177 (466)
Q Consensus 127 vr~lf--te~vi~~iEkd~gckikm~e-----------------kf~~vsgkDRl~l~kgvdaVhk~i~e 177 (466)
|..++ .+++|.+|++++||||-+.. -.|.|++.|--.|.+++.-|..||.+
T Consensus 30 ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 30 KEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQT 99 (119)
T ss_dssp HHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhhc
Confidence 34444 88999999999999999963 37889999999999999988888865
No 3
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=94.84 E-value=0.014 Score=46.53 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=48.9
Q ss_pred HHHhhhcccchhhhhh--hHHHHHHhhhccccccccccc-------eEEeccCcceeeecchhhHHHHHHhh
Q 012298 116 FFERVAARDKHVRALF--TEKVIQRIEKDISCKIKMDEK-------FIIVSGKDRLILSKGVDAVHKIIKEE 178 (466)
Q Consensus 116 ffeRv~ardk~vr~lf--te~vi~~iEkd~gckikm~ek-------f~~vsgkDRl~l~kgvdaVhk~i~e~ 178 (466)
+.++|.-=...|..+. .+++|..|++++||+|.+++. .|.|+|. .--+.++...|..+|.+.
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 15 MTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-PESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp EEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 3445555556777777 689999999999999999984 7888887 667788888899988763
No 4
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=94.62 E-value=0.0061 Score=48.81 Aligned_cols=64 Identities=11% Similarity=0.269 Sum_probs=49.7
Q ss_pred hHHHHhhhcccchhhhhh--hHHHHHHhhhccccccccccc---------eEEeccCcceeeecchhhHHHHHHhh
Q 012298 114 QDFFERVAARDKHVRALF--TEKVIQRIEKDISCKIKMDEK---------FIIVSGKDRLILSKGVDAVHKIIKEE 178 (466)
Q Consensus 114 ~dffeRv~ardk~vr~lf--te~vi~~iEkd~gckikm~ek---------f~~vsgkDRl~l~kgvdaVhk~i~e~ 178 (466)
..+.++|.--...|..+. .+++|..|++++||+|.+++. .|.|+| +.-.+.+++..|..+|.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHhcc
Confidence 344555555556677776 789999999999999999763 477888 7778888999999988663
No 5
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=94.35 E-value=0.011 Score=46.23 Aligned_cols=52 Identities=13% Similarity=0.285 Sum_probs=41.9
Q ss_pred chhhhhh--hHHHHHHhhhccccccccccc---------eEEeccCcceeeecchhhHHHHHHh
Q 012298 125 KHVRALF--TEKVIQRIEKDISCKIKMDEK---------FIIVSGKDRLILSKGVDAVHKIIKE 177 (466)
Q Consensus 125 k~vr~lf--te~vi~~iEkd~gckikm~ek---------f~~vsgkDRl~l~kgvdaVhk~i~e 177 (466)
..|..+. .+++|..|++++||+|.+++. .|.|+| +.-.+.+++..|..+++|
T Consensus 23 ~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 23 GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILRE 85 (85)
T ss_dssp TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHHHTC
T ss_pred hheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHhcC
Confidence 5566666 799999999999999999874 277788 777778888888887753
No 6
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.17 E-value=0.018 Score=46.25 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=44.9
Q ss_pred cchhhhhh--hHHHHHHhhhcccccccccc-----ceEEeccCcceeeecchhhHHHHHHhhc
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMDE-----KFIIVSGKDRLILSKGVDAVHKIIKEEG 179 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~e-----kf~~vsgkDRl~l~kgvdaVhk~i~e~~ 179 (466)
...++.+. ++++|..|+.++||+|.+++ ..|.|+|. .--+.++.+.+..++.+..
T Consensus 25 ~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 25 KEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp TTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-HHHHHHHHHHHHHHhhccc
Confidence 34555665 68999999999999999974 58889998 8888889999999887644
No 7
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=94.17 E-value=0.014 Score=47.41 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=43.5
Q ss_pred cchhhhhh--hHHHHHHhhhcccccccccc---------ceEEeccCcceeeecchhhHHHHHHhh
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMDE---------KFIIVSGKDRLILSKGVDAVHKIIKEE 178 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~e---------kf~~vsgkDRl~l~kgvdaVhk~i~e~ 178 (466)
...|..+. .+++|..|++++||+|.+++ ..|.|+|.+. -+.+++..|..+|.++
T Consensus 23 ~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 23 QRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-EVAAAKHLILEKVSED 87 (104)
T ss_dssp TTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-HHHHHHHHHHHHHHHH
T ss_pred hhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-HHHHHHHHHHHHHhhC
Confidence 34566666 58999999999999999984 6788889887 4688888888888654
No 8
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=93.89 E-value=0.0099 Score=45.45 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=40.4
Q ss_pred chhhhhh--hHHHHHHhhhcccccccccc-------ceEEeccCcceeeecchhhHHHHHHhh
Q 012298 125 KHVRALF--TEKVIQRIEKDISCKIKMDE-------KFIIVSGKDRLILSKGVDAVHKIIKEE 178 (466)
Q Consensus 125 k~vr~lf--te~vi~~iEkd~gckikm~e-------kf~~vsgkDRl~l~kgvdaVhk~i~e~ 178 (466)
..|..+. ++++|..|..++||+|.+++ ..|.|+|. .--+.++...|..+|.++
T Consensus 14 ~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 14 DLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-AASISLAQYLINVRLSSE 75 (76)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHTTC
T ss_pred HHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-HHHHHHHHHHHHHHHHcc
Confidence 4566666 68999999999999999985 67778886 555666777777776554
No 9
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.76 E-value=0.042 Score=44.83 Aligned_cols=55 Identities=15% Similarity=0.284 Sum_probs=45.9
Q ss_pred chhhhhh--hHHHHHHhhhcc-ccccccccc-----eEEeccCcceeeecchhhHHHHHHhhcC
Q 012298 125 KHVRALF--TEKVIQRIEKDI-SCKIKMDEK-----FIIVSGKDRLILSKGVDAVHKIIKEEGD 180 (466)
Q Consensus 125 k~vr~lf--te~vi~~iEkd~-gckikm~ek-----f~~vsgkDRl~l~kgvdaVhk~i~e~~~ 180 (466)
+.++.+. .+++|..|+.++ ||+|.+++. -|.|+|++. .+.++.+.+..++.+-..
T Consensus 26 ~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~-~v~~A~~~I~~iv~e~e~ 88 (95)
T 2ctj_A 26 KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSS-DVEKAKKQLLHLAEEKQT 88 (95)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHH-HHHHHHHHHHHHHhhhhh
Confidence 3455665 789999999999 999999874 799999999 889999999998876443
No 10
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=93.74 E-value=0.015 Score=44.07 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=36.4
Q ss_pred hhhhhh--hHHHHHHhhhcccccccccc----------ceEEeccCcceeeecchhhHHHHHHh
Q 012298 126 HVRALF--TEKVIQRIEKDISCKIKMDE----------KFIIVSGKDRLILSKGVDAVHKIIKE 177 (466)
Q Consensus 126 ~vr~lf--te~vi~~iEkd~gckikm~e----------kf~~vsgkDRl~l~kgvdaVhk~i~e 177 (466)
.|..+. .+++|..|++.+||+|.+++ ..|.|+|. .--+.++...|..+|.|
T Consensus 13 ~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 13 LVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTY 75 (76)
T ss_dssp THHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC-
T ss_pred HcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 455555 58999999999999999986 37777886 44555555566555544
No 11
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=93.71 E-value=0.027 Score=44.49 Aligned_cols=55 Identities=16% Similarity=0.323 Sum_probs=42.9
Q ss_pred cchhhhhh--hHHHHHHhhhcccccccccc-------ceEEeccCcceeeecchhhHHHHHHhhc
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMDE-------KFIIVSGKDRLILSKGVDAVHKIIKEEG 179 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~e-------kf~~vsgkDRl~l~kgvdaVhk~i~e~~ 179 (466)
...|..+. .+++|..|++++||+|++++ ..|.|+|. .--+.+++..|..+|++..
T Consensus 22 ~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~~ 85 (89)
T 1j5k_A 22 KDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQYS 85 (89)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHHC
T ss_pred hhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHHhhh
Confidence 34566666 68999999999999999987 57778887 5556677778888887653
No 12
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=93.66 E-value=0.018 Score=44.75 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=40.2
Q ss_pred chhhhhh--hHHHHHHhhhcccccccccc-------ceEEeccCcceeeecchhhHHHHHHhhc
Q 012298 125 KHVRALF--TEKVIQRIEKDISCKIKMDE-------KFIIVSGKDRLILSKGVDAVHKIIKEEG 179 (466)
Q Consensus 125 k~vr~lf--te~vi~~iEkd~gckikm~e-------kf~~vsgkDRl~l~kgvdaVhk~i~e~~ 179 (466)
..|..+. .+++|..|.+++||+|.+++ ..|.|+|.. --+.+++..|..+|.++.
T Consensus 15 ~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~-~~v~~A~~~I~~~i~~~~ 77 (82)
T 1wvn_A 15 NLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSA-ASISLAQYLINARLSSEK 77 (82)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECH-HHHHHHHHHHHHHTC---
T ss_pred HhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCH-HHHHHHHHHHHHHHHhhh
Confidence 4566666 68999999999999999986 377788876 556667777777776653
No 13
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=93.51 E-value=0.034 Score=43.25 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=43.5
Q ss_pred chhhhhh--hHHHHHHhhhccccccccccc-------eEEeccCcceeeecchhhHHHHHHhhcC
Q 012298 125 KHVRALF--TEKVIQRIEKDISCKIKMDEK-------FIIVSGKDRLILSKGVDAVHKIIKEEGD 180 (466)
Q Consensus 125 k~vr~lf--te~vi~~iEkd~gckikm~ek-------f~~vsgkDRl~l~kgvdaVhk~i~e~~~ 180 (466)
..|..+. .+++|..|+.++||+|.+++. .|.|+|. .--+.++...|..+|++.++
T Consensus 16 ~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 16 DLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp TTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC-HHHHHHHHHHHHHHHHHHHS
T ss_pred HhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhccC
Confidence 4566666 689999999999999999874 7888885 56667778888888877654
No 14
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=93.44 E-value=0.014 Score=47.94 Aligned_cols=54 Identities=9% Similarity=0.219 Sum_probs=43.4
Q ss_pred chhhhhh--hHHHHHHhhhcccccccccc----------ceEEeccCcceeeecchhhHHHHHHhhc
Q 012298 125 KHVRALF--TEKVIQRIEKDISCKIKMDE----------KFIIVSGKDRLILSKGVDAVHKIIKEEG 179 (466)
Q Consensus 125 k~vr~lf--te~vi~~iEkd~gckikm~e----------kf~~vsgkDRl~l~kgvdaVhk~i~e~~ 179 (466)
..|..+. .+++|..|++++||+|++++ ..|.|+| +.-.+.+++..|..+|.+..
T Consensus 16 ~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 16 HKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp GGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCSCC
T ss_pred HHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhccc
Confidence 4566666 58999999999999999986 4788888 77777888888888887654
No 15
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=93.12 E-value=0.017 Score=44.29 Aligned_cols=52 Identities=15% Similarity=0.358 Sum_probs=36.7
Q ss_pred chhhhhh--hHHHHHHhhhccccccccccc-----eEEeccCcceeeecchhhHHHHHHh
Q 012298 125 KHVRALF--TEKVIQRIEKDISCKIKMDEK-----FIIVSGKDRLILSKGVDAVHKIIKE 177 (466)
Q Consensus 125 k~vr~lf--te~vi~~iEkd~gckikm~ek-----f~~vsgkDRl~l~kgvdaVhk~i~e 177 (466)
..+..+. ++++|..|..++||+|.+++. .|.|+|. .-.+.+++..|..+|.|
T Consensus 14 ~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 14 KEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-HHHHHHHHHHHHHHHHC
T ss_pred hHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 4455555 789999999999999999986 5666665 44445555556665544
No 16
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=92.93 E-value=0.042 Score=45.52 Aligned_cols=54 Identities=13% Similarity=0.308 Sum_probs=42.6
Q ss_pred cchhhhhh--hHHHHHHhhhcccccccccc-------ceEEeccCcceeeecchhhHHHHHHhh
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMDE-------KFIIVSGKDRLILSKGVDAVHKIIKEE 178 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~e-------kf~~vsgkDRl~l~kgvdaVhk~i~e~ 178 (466)
...|..+. .+++|..|++++||+|.+++ ..|.|+|. .-.+.++...|.++|.+.
T Consensus 19 ~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 19 RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSL 81 (106)
T ss_dssp TTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhcc
Confidence 34555665 68999999999999999974 26888887 566778888888888663
No 17
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=92.77 E-value=0.054 Score=42.42 Aligned_cols=55 Identities=11% Similarity=0.179 Sum_probs=43.4
Q ss_pred hhhhhh--hHHHHHHhhhcccccccccc----------ceEEeccCcceeeecchhhHHHHHHhhcCC
Q 012298 126 HVRALF--TEKVIQRIEKDISCKIKMDE----------KFIIVSGKDRLILSKGVDAVHKIIKEEGDQ 181 (466)
Q Consensus 126 ~vr~lf--te~vi~~iEkd~gckikm~e----------kf~~vsgkDRl~l~kgvdaVhk~i~e~~~~ 181 (466)
.|..+. ++++|..|++.+||+|.+++ ..|.|+|. .-.+.++...|..+|.+....
T Consensus 13 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~~~ 79 (87)
T 1ec6_A 13 LVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQGV 79 (87)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhccccc
Confidence 445555 68999999999999999986 37888887 567778888888888775443
No 18
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=92.02 E-value=0.039 Score=35.88 Aligned_cols=20 Identities=30% Similarity=0.896 Sum_probs=17.1
Q ss_pred hhHhhcCCCCccccCCCCcc
Q 012298 88 MICKICGESGHFTQGCPSTL 107 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~tL 107 (466)
..|-.||+.|||+..||.--
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 46999999999999999753
No 19
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.92 E-value=0.056 Score=44.44 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=41.1
Q ss_pred hhhhhh--hHHHHHHhhhccccccccccc-----eEEeccCcceeeecchhhHHHHHHh
Q 012298 126 HVRALF--TEKVIQRIEKDISCKIKMDEK-----FIIVSGKDRLILSKGVDAVHKIIKE 177 (466)
Q Consensus 126 ~vr~lf--te~vi~~iEkd~gckikm~ek-----f~~vsgkDRl~l~kgvdaVhk~i~e 177 (466)
.++.+. ++++|..|+.++||+|.+++. .|.|+|.+ --+.+....+..++++
T Consensus 27 ~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~-e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 27 LHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLA-ANLDRAKAGLLERVKE 84 (104)
T ss_dssp HHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECH-HHHHHHHHHHHHHHHH
T ss_pred HccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCH-HHHHHHHHHHHHHHhh
Confidence 445554 799999999999999999986 89999987 5567777777777655
No 20
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.45 E-value=0.066 Score=43.38 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=45.0
Q ss_pred cchhhhhh--hHHHHHHhhhccccccccccc------eEEeccCcceeeecchhhHHHHHHhhcCCC
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMDEK------FIIVSGKDRLILSKGVDAVHKIIKEEGDQR 182 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~ek------f~~vsgkDRl~l~kgvdaVhk~i~e~~~~~ 182 (466)
...++.+. .+++|..|+.++||+|++.+. .|.|+|.. --+.+...++..+++|-...-
T Consensus 25 ~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~-e~v~~A~~~I~~i~~e~~~~~ 90 (95)
T 2ctm_A 25 HRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLP-ENVEEAIDHILNLEEEYLADS 90 (95)
T ss_dssp TTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCH-HHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCH-HHHHHHHHHHHHHHHHHHHHh
Confidence 34556665 789999999999999999886 78889986 446778888888887654433
No 21
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=90.36 E-value=0.085 Score=46.52 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=37.5
Q ss_pred hHHHHHHhhhccccccccccc-------------------------eEEeccCcce-----eeecchhhHHHHHH
Q 012298 132 TEKVIQRIEKDISCKIKMDEK-------------------------FIIVSGKDRL-----ILSKGVDAVHKIIK 176 (466)
Q Consensus 132 te~vi~~iEkd~gckikm~ek-------------------------f~~vsgkDRl-----~l~kgvdaVhk~i~ 176 (466)
.+.+|.+||+++||||.+..+ .|.||+.|-- .|.+++.-|.+++.
T Consensus 26 rG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 26 RGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp THHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHHHSS
T ss_pred CcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHHHHCC
Confidence 788999999999999988752 7889988864 67788888888774
No 22
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=89.50 E-value=0.17 Score=42.68 Aligned_cols=57 Identities=7% Similarity=0.158 Sum_probs=45.3
Q ss_pred cchhhhhh--hHHHHHHhhhccccccccccc---------eEEeccCcceeeecchhhHHHHHHhhcCC
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMDEK---------FIIVSGKDRLILSKGVDAVHKIIKEEGDQ 181 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~ek---------f~~vsgkDRl~l~kgvdaVhk~i~e~~~~ 181 (466)
...+..+. .+++|..|..++||+|.+.+. .|.|+| +.--+.++...|..+|++-..+
T Consensus 93 ~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~~ 160 (163)
T 3krm_A 93 ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIG-HFYASQMAQRKIRDILAQVKQQ 160 (163)
T ss_dssp TTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC-
T ss_pred hhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHHHHHh
Confidence 45566665 799999999999999999876 788888 6667788888888888775443
No 23
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=89.07 E-value=0.068 Score=40.94 Aligned_cols=27 Identities=26% Similarity=0.774 Sum_probs=21.1
Q ss_pred hhhhhhhhhhHhhcCCCCccccCCCCc
Q 012298 80 WKKRKEEEMICKICGESGHFTQGCPST 106 (466)
Q Consensus 80 wkkrkeeem~ckicge~ghf~qgcp~t 106 (466)
|.++.-....|-+||+.|||+.-||.-
T Consensus 16 ~~~~~~~~~~C~~Cge~GH~ardCp~~ 42 (56)
T 1u6p_A 16 RRRSQLDRDQCAYCKEKGHWAKDCPKK 42 (56)
T ss_dssp CCSTTCCTTBCSSSCCBSSCGGGCTTC
T ss_pred cCCCCCCCCcceeCCCCCcccccCcCC
Confidence 344444456799999999999999973
No 24
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=89.01 E-value=0.11 Score=37.59 Aligned_cols=21 Identities=33% Similarity=0.879 Sum_probs=18.5
Q ss_pred hhhHhhcCCCCccccCCCCcc
Q 012298 87 EMICKICGESGHFTQGCPSTL 107 (466)
Q Consensus 87 em~ckicge~ghf~qgcp~tL 107 (466)
...|-+||+.||++.-||.-.
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSC
T ss_pred CCeeeECCCCCcchhhCcCCc
Confidence 468999999999999999754
No 25
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=88.90 E-value=0.17 Score=42.50 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=41.8
Q ss_pred cchhhhhh--hHHHHHHhhhccccccccc--------cceEEeccCcceeeecchhhHHHHHHh
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMD--------EKFIIVSGKDRLILSKGVDAVHKIIKE 177 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~--------ekf~~vsgkDRl~l~kgvdaVhk~i~e 177 (466)
...+..+. .+++|..|...+||+|.++ +..|.|+| +.--+.+++..|..+|.|
T Consensus 97 ~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 97 ASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred hhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 45666666 6899999999999999997 46788888 566667777777777765
No 26
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=88.52 E-value=0.17 Score=42.24 Aligned_cols=53 Identities=15% Similarity=0.343 Sum_probs=41.7
Q ss_pred cchhhhhh--hHHHHHHhhhccccccccc-------cceEEeccCcceeeecchhhHHHHHHh
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMD-------EKFIIVSGKDRLILSKGVDAVHKIIKE 177 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~-------ekf~~vsgkDRl~l~kgvdaVhk~i~e 177 (466)
...+..+. .+++|..|++++||+|.+. +..|.|+|. .--+.++...|..+|++
T Consensus 99 ~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 99 RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQS 160 (164)
T ss_dssp TTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC-HHHHHHHHHHHHHHHHH
T ss_pred hhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC-HHHHHHHHHHHHHHHhh
Confidence 34566666 6899999999999999998 468888887 55677777888887765
No 27
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=87.99 E-value=0.13 Score=35.25 Aligned_cols=18 Identities=39% Similarity=1.012 Sum_probs=15.8
Q ss_pred hhHhhcCCCCccccCCCC
Q 012298 88 MICKICGESGHFTQGCPS 105 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~ 105 (466)
..|-+||+.||++..||+
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 479999999999999985
No 28
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=87.71 E-value=0.22 Score=42.63 Aligned_cols=52 Identities=12% Similarity=0.330 Sum_probs=39.9
Q ss_pred hhhhhh--hHHHHHHhhhcccccccccc-------ceEEeccCcceeeecchhhHHHHHHhh
Q 012298 126 HVRALF--TEKVIQRIEKDISCKIKMDE-------KFIIVSGKDRLILSKGVDAVHKIIKEE 178 (466)
Q Consensus 126 ~vr~lf--te~vi~~iEkd~gckikm~e-------kf~~vsgkDRl~l~kgvdaVhk~i~e~ 178 (466)
.|..+. .+++|.+|++++||+|.+++ .+|.|+|. .--+.++...|.+++.+.
T Consensus 13 ~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~ 73 (174)
T 1j4w_A 13 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-PDRAQHAAEIITDLLRSV 73 (174)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred heeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 444454 78999999999999999974 37788887 445667777788888764
No 29
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=87.49 E-value=0.18 Score=40.82 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=41.9
Q ss_pred cchhhhhh--hHHHHHHhhhccccccccccc--------eEEeccCcceeeecchhhHHHHHHhhc
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMDEK--------FIIVSGKDRLILSKGVDAVHKIIKEEG 179 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~ek--------f~~vsgkDRl~l~kgvdaVhk~i~e~~ 179 (466)
...|..+. .+++|..|..++||+|.+.+. .|.|+|. .-.+.++...+..++++-.
T Consensus 25 ~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 25 PKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRIVGELE 89 (97)
T ss_dssp TTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHHHH
Confidence 34556666 689999999999999999764 6888887 4456677777777776543
No 30
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=87.02 E-value=0.11 Score=43.56 Aligned_cols=54 Identities=15% Similarity=0.362 Sum_probs=38.8
Q ss_pred cchhhhhh--hHHHHHHhhhccccccccccc-----eEEeccCcceeeecchhhHHHHHHhh
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMDEK-----FIIVSGKDRLILSKGVDAVHKIIKEE 178 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~ek-----f~~vsgkDRl~l~kgvdaVhk~i~e~ 178 (466)
...+..+. .+.+|.+|++++||+|.+++. +|.|+|. .--+.++...|..++.+.
T Consensus 13 ~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e~ 73 (160)
T 2jzx_A 13 GKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEED 73 (160)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred hhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhh
Confidence 34555565 789999999999999999875 7778886 333445555566666553
No 31
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=86.96 E-value=0.18 Score=34.89 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=16.3
Q ss_pred hhHhhcCCCCccccCCCC
Q 012298 88 MICKICGESGHFTQGCPS 105 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~ 105 (466)
..|-+||+.||++..||.
T Consensus 22 ~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SSCTTTCCSSSCTTTSCC
T ss_pred CccccCCCCCCccCcCcC
Confidence 589999999999999983
No 32
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.69 E-value=0.2 Score=38.27 Aligned_cols=20 Identities=35% Similarity=1.065 Sum_probs=17.7
Q ss_pred hhhHhhcCCCCccccCCCCc
Q 012298 87 EMICKICGESGHFTQGCPST 106 (466)
Q Consensus 87 em~ckicge~ghf~qgcp~t 106 (466)
-.+|-.||+.||+.+-||+.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 35799999999999999964
No 33
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=86.51 E-value=0.24 Score=36.79 Aligned_cols=21 Identities=24% Similarity=0.635 Sum_probs=18.9
Q ss_pred hhHhhcCCCCccccCCCCccc
Q 012298 88 MICKICGESGHFTQGCPSTLG 108 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~tLG 108 (466)
.+|-+||+.||++..||+...
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~~ 51 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSKTD 51 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCTTS
T ss_pred cceeECCCCCCccCcCCCccc
Confidence 689999999999999998754
No 34
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=86.04 E-value=0.22 Score=41.59 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=36.3
Q ss_pred hhhhhh--hHHHHHHhhhcccccccccc---------ceEEeccCcceeeecchhhHHHHHHh
Q 012298 126 HVRALF--TEKVIQRIEKDISCKIKMDE---------KFIIVSGKDRLILSKGVDAVHKIIKE 177 (466)
Q Consensus 126 ~vr~lf--te~vi~~iEkd~gckikm~e---------kf~~vsgkDRl~l~kgvdaVhk~i~e 177 (466)
.+..+. .+.+|..|++++||+|.+.. .+|.|+| +.-.+.++..+|..++.+
T Consensus 12 ~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ii~e 73 (164)
T 2jvz_A 12 KAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILRE 73 (164)
T ss_dssp CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEE-CHHHHHHHHHHHHHHTTC
T ss_pred heeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHh
Confidence 445555 68999999999999999853 3777787 444455666666666644
No 35
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=85.77 E-value=0.21 Score=33.01 Aligned_cols=19 Identities=32% Similarity=0.833 Sum_probs=17.0
Q ss_pred hhHhhcCCCCccccCCCCc
Q 012298 88 MICKICGESGHFTQGCPST 106 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~t 106 (466)
+.|-.||+.||++.-||..
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 6799999999999999863
No 36
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=85.47 E-value=0.35 Score=41.40 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=42.1
Q ss_pred hhhcccchhhhhh--hHHHHHHhhhccccccccccc---------eEEeccCcceeeecchhhHHHHHHh
Q 012298 119 RVAARDKHVRALF--TEKVIQRIEKDISCKIKMDEK---------FIIVSGKDRLILSKGVDAVHKIIKE 177 (466)
Q Consensus 119 Rv~ardk~vr~lf--te~vi~~iEkd~gckikm~ek---------f~~vsgkDRl~l~kgvdaVhk~i~e 177 (466)
+|.--...+..+. .+++|..|...+||+|.+... .|.|+|.. -.+.++...|..+|+|
T Consensus 107 ~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~-~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 107 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEP-EQNRKAVELIIQKIQE 175 (178)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSH-HHHHHHHHHHHHHHHS
T ss_pred EEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCH-HHHHHHHHHHHHHHHh
Confidence 3333344556666 789999999999999999754 77888876 4556677777777765
No 37
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=84.68 E-value=0.14 Score=39.05 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=28.0
Q ss_pred hhhhhh--hHHHHHHhhhccccccccccc-----eEEeccCc
Q 012298 126 HVRALF--TEKVIQRIEKDISCKIKMDEK-----FIIVSGKD 160 (466)
Q Consensus 126 ~vr~lf--te~vi~~iEkd~gckikm~ek-----f~~vsgkD 160 (466)
.++.+. .+++|..|+.++||+|.+++. -|.|+|..
T Consensus 15 ~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~ 56 (71)
T 1vig_A 15 FHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDP 56 (71)
T ss_dssp HHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESS
T ss_pred HhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCH
Confidence 445555 788999999999999999875 67777763
No 38
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=84.30 E-value=0.36 Score=41.27 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=35.1
Q ss_pred cchhhhhh--hHHHHHHhhhccccccccccc----------eEEeccCcceeeecchhhHHHHHHh
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMDEK----------FIIVSGKDRLILSKGVDAVHKIIKE 177 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~ek----------f~~vsgkDRl~l~kgvdaVhk~i~e 177 (466)
.+.+..+. .+.+|..|++++||+|++++. +|.|+|. .--+.+....|.+++.+
T Consensus 14 ~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 14 SYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIRE 78 (178)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHTC
T ss_pred hhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 34555665 789999999999999999753 6777775 22233444444454533
No 39
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=84.13 E-value=0.25 Score=36.08 Aligned_cols=18 Identities=33% Similarity=0.783 Sum_probs=14.2
Q ss_pred hhHhhcCCCCccccCCCC
Q 012298 88 MICKICGESGHFTQGCPS 105 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~ 105 (466)
..|-.||+.||++..||.
T Consensus 34 ~~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp CBCTTTCCBSSCGGGCSS
T ss_pred CEeCCCCCcCCccCCCcC
Confidence 468888888888888875
No 40
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=83.56 E-value=0.29 Score=33.80 Aligned_cols=18 Identities=33% Similarity=0.822 Sum_probs=16.3
Q ss_pred hHhhcCCCCccccCCCCc
Q 012298 89 ICKICGESGHFTQGCPST 106 (466)
Q Consensus 89 ~ckicge~ghf~qgcp~t 106 (466)
.|-.||+.||++..||..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 588999999999999974
No 41
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=83.20 E-value=0.28 Score=36.85 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=18.2
Q ss_pred hhhHhhcCCCCccccCCCCcc
Q 012298 87 EMICKICGESGHFTQGCPSTL 107 (466)
Q Consensus 87 em~ckicge~ghf~qgcp~tL 107 (466)
..+|-+||+.||++..||..-
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCCC
Confidence 367999999999999999753
No 42
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=83.19 E-value=0.27 Score=35.54 Aligned_cols=18 Identities=39% Similarity=0.949 Sum_probs=15.5
Q ss_pred hhHhhcCCCCccccCCCC
Q 012298 88 MICKICGESGHFTQGCPS 105 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~ 105 (466)
..|-+||+.||++..||.
T Consensus 28 ~~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CSCSSSCCSSCCGGGCCS
T ss_pred CeeCcCCCcCCccCCCcC
Confidence 469999999999999986
No 43
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=82.22 E-value=0.39 Score=41.89 Aligned_cols=26 Identities=19% Similarity=0.520 Sum_probs=17.7
Q ss_pred hhhHhhcCCCCccccCCCCccccCCc
Q 012298 87 EMICKICGESGHFTQGCPSTLGANRK 112 (466)
Q Consensus 87 em~ckicge~ghf~qgcp~tLGanrk 112 (466)
...|.+||+.||+...||........
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~~~~~~ 144 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKAQQGPS 144 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTTC----
T ss_pred CCcccccCCcCCEeccCcCCCCCCCc
Confidence 35799999999999999876554333
No 44
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.20 E-value=0.42 Score=36.27 Aligned_cols=19 Identities=26% Similarity=0.768 Sum_probs=17.6
Q ss_pred hhHhhcCCCCccccCCCCc
Q 012298 88 MICKICGESGHFTQGCPST 106 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~t 106 (466)
.+|-+||+.||++..||..
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGG
T ss_pred CccCCcCCcCCccCcCCCc
Confidence 6899999999999999975
No 45
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=80.28 E-value=0.54 Score=34.27 Aligned_cols=22 Identities=27% Similarity=0.815 Sum_probs=19.1
Q ss_pred hhhhhHhhcCCCCccccCCCCc
Q 012298 85 EEEMICKICGESGHFTQGCPST 106 (466)
Q Consensus 85 eeem~ckicge~ghf~qgcp~t 106 (466)
.....|-.||+.||++..||..
T Consensus 10 ~~~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 10 RKTVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp GGTCBCTTTCCBSSCGGGCSSC
T ss_pred CCCcceeeeCCCCcChhhcCCC
Confidence 3457899999999999999975
No 46
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=79.94 E-value=0.56 Score=40.10 Aligned_cols=35 Identities=14% Similarity=0.368 Sum_probs=27.8
Q ss_pred cchhhhhh--hHHHHHHhhhcccccccccc----------ceEEecc
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMDE----------KFIIVSG 158 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~e----------kf~~vsg 158 (466)
...+..+. .+++|..|++.+||+|.+++ ..|.|+|
T Consensus 112 ~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G 158 (174)
T 1j4w_A 112 TGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG 158 (174)
T ss_dssp TTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC
T ss_pred hHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC
Confidence 34566666 68999999999999999975 4677777
No 47
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=79.30 E-value=0.49 Score=37.38 Aligned_cols=20 Identities=25% Similarity=0.710 Sum_probs=17.1
Q ss_pred hhHhhcCCCCccccCCCCcc
Q 012298 88 MICKICGESGHFTQGCPSTL 107 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~tL 107 (466)
.+|-+||+.||++..||...
T Consensus 47 ~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 47 KKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp CCCTTTCCTTSCGGGCTTGG
T ss_pred CccCCcCCcCCccCcCcCCc
Confidence 57999999999999998753
No 48
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=79.19 E-value=0.49 Score=34.17 Aligned_cols=19 Identities=32% Similarity=0.833 Sum_probs=17.5
Q ss_pred hhHhhcCCCCccccCCCCc
Q 012298 88 MICKICGESGHFTQGCPST 106 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~t 106 (466)
..|-.||+.||++..||..
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCS
T ss_pred CeeeecCCCCcChhhCcCC
Confidence 6799999999999999985
No 49
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=78.34 E-value=0.54 Score=32.10 Aligned_cols=18 Identities=33% Similarity=0.977 Sum_probs=16.1
Q ss_pred hHhhcCCCCccccCCCCc
Q 012298 89 ICKICGESGHFTQGCPST 106 (466)
Q Consensus 89 ~ckicge~ghf~qgcp~t 106 (466)
.|-.||+.||++..||..
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 488899999999999974
No 50
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.60 E-value=0.68 Score=36.82 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=35.1
Q ss_pred cchhhhhh--hHHHHHHhhhcccccccccc----ceEEeccCcceeeecchhhHHHHH
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMDE----KFIIVSGKDRLILSKGVDAVHKII 175 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~e----kf~~vsgkDRl~l~kgvdaVhk~i 175 (466)
+..|..+. .+.+|.+|+.++||+|.+.. ..|.++|.- --+.++.+.+..+|
T Consensus 18 ~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~~-e~v~~A~~~I~~~i 74 (83)
T 2dgr_A 18 YRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMP-ENVDRAREEIEAHI 74 (83)
T ss_dssp HHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEECT-TTHHHHHHHHHHHH
T ss_pred hHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcCH-HHHHHHHHHHHHHH
Confidence 35666666 78899999999999999983 356666653 34445555555544
No 51
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=77.59 E-value=0.48 Score=38.29 Aligned_cols=19 Identities=32% Similarity=0.849 Sum_probs=17.0
Q ss_pred hhHhhcCCCCccccCCCCc
Q 012298 88 MICKICGESGHFTQGCPST 106 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~t 106 (466)
+.|-.||+.||++.-||..
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 6799999999999999975
No 52
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=77.53 E-value=0.51 Score=39.07 Aligned_cols=23 Identities=35% Similarity=0.866 Sum_probs=19.7
Q ss_pred hhhhhhHhhcCCCCccccCCCCc
Q 012298 84 KEEEMICKICGESGHFTQGCPST 106 (466)
Q Consensus 84 keeem~ckicge~ghf~qgcp~t 106 (466)
||-..+|-.||+.||++..||+.
T Consensus 1 ~e~~~~C~~C~~~GH~~~~Cp~~ 23 (124)
T 2lli_A 1 KEAAPKCNNCSQRGHLKKDCPHI 23 (124)
T ss_dssp CCCSSCCSSCSSSSCCTTTTTSC
T ss_pred CCCCCcccCCCCCCcCcccCcCC
Confidence 46668899999999999999983
No 53
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=77.29 E-value=1.1 Score=37.70 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=36.9
Q ss_pred hhhhhh--hHHHHHHhhhccccccccccc--------eEEeccCcceeeecchhhHHHHHHhh
Q 012298 126 HVRALF--TEKVIQRIEKDISCKIKMDEK--------FIIVSGKDRLILSKGVDAVHKIIKEE 178 (466)
Q Consensus 126 ~vr~lf--te~vi~~iEkd~gckikm~ek--------f~~vsgkDRl~l~kgvdaVhk~i~e~ 178 (466)
.+..+. .+.+|..|.+++||+|.+.+. +|.|+| +.--+.++...|..++.+.
T Consensus 13 ~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G-~~e~v~~A~~~I~~~~~e~ 74 (163)
T 3krm_A 13 AVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITG-PPEAQFKAQGRIYGKLKEE 74 (163)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEE-CHHHHHHHHHHHHHHHHHT
T ss_pred hcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhcc
Confidence 445555 789999999999999999874 577888 3344455555666666553
No 54
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=76.95 E-value=0.62 Score=49.15 Aligned_cols=50 Identities=8% Similarity=0.113 Sum_probs=37.8
Q ss_pred hhhhhh--hHHHHHHhhhcccccccccc-ceEEeccCcceeeecchhhHHHHH
Q 012298 126 HVRALF--TEKVIQRIEKDISCKIKMDE-KFIIVSGKDRLILSKGVDAVHKII 175 (466)
Q Consensus 126 ~vr~lf--te~vi~~iEkd~gckikm~e-kf~~vsgkDRl~l~kgvdaVhk~i 175 (466)
.|++++ ++++|..|+.++||+|.+++ --|.|+|.|.-.+.+..+.|..|+
T Consensus 577 kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 577 KRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECSSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred HhheeECCCChhHHHHHHHHCCEEEEcCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 356666 89999999999999999975 588888898876666655555443
No 55
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=76.71 E-value=0.54 Score=35.29 Aligned_cols=20 Identities=35% Similarity=1.006 Sum_probs=18.0
Q ss_pred hhHhhcCCCCccccCCCCcc
Q 012298 88 MICKICGESGHFTQGCPSTL 107 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~tL 107 (466)
.+|-.||+.||++.-||..-
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~~ 24 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKKR 24 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTTT
T ss_pred CcccccCCCCeehhhCcCCc
Confidence 57999999999999999864
No 56
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=74.72 E-value=0.81 Score=36.12 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=19.5
Q ss_pred hhhhhhHhhcCCCCccccCCCCc
Q 012298 84 KEEEMICKICGESGHFTQGCPST 106 (466)
Q Consensus 84 keeem~ckicge~ghf~qgcp~t 106 (466)
+.-...|-.||+.||++..||..
T Consensus 21 ~~r~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 21 RSKGDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp CSTTSCCTTTCCSSSCTTTCSSC
T ss_pred cCCCCcccccCCcCcCcccCCCC
Confidence 44557899999999999999963
No 57
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=74.18 E-value=1.2 Score=41.14 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=42.4
Q ss_pred cchhhhhh--hHHHHHHhhhccccccccc--cceEEeccCc----ceeeecchhhHHHHH
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMD--EKFIIVSGKD----RLILSKGVDAVHKII 175 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~--ekf~~vsgkD----Rl~l~kgvdaVhk~i 175 (466)
...+.++. .+++|..|+.++||+|.|+ +.-|.|++.+ --.+.|+.+-|..++
T Consensus 42 ~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 42 KDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 34566666 7899999999999999998 3577788776 778888888888876
No 58
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=71.01 E-value=1.2 Score=36.78 Aligned_cols=21 Identities=33% Similarity=0.901 Sum_probs=18.6
Q ss_pred hhhhHhhcCCCCccccCCCCc
Q 012298 86 EEMICKICGESGHFTQGCPST 106 (466)
Q Consensus 86 eem~ckicge~ghf~qgcp~t 106 (466)
..++|-.||+.|||+.-||..
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~~ 124 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKEK 124 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCCC
T ss_pred CCCCcCCCCCCCcCcccCcCC
Confidence 358999999999999999963
No 59
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=70.61 E-value=1.4 Score=36.40 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=35.1
Q ss_pred Hhhhcccchhhhhh--hHHHHHHhhhccccc-ccccc--ceEEeccCcceee
Q 012298 118 ERVAARDKHVRALF--TEKVIQRIEKDISCK-IKMDE--KFIIVSGKDRLIL 164 (466)
Q Consensus 118 eRv~ardk~vr~lf--te~vi~~iEkd~gck-ikm~e--kf~~vsgkDRl~l 164 (466)
+-+--.-..++++. .+++|.+|.+++|++ |.++| .-|.|+|.|.-.+
T Consensus 17 ~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g~~~ea~ 68 (91)
T 2cpq_A 17 EEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAV 68 (91)
T ss_dssp EEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHH
T ss_pred EEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCEEEEEECCHHHH
Confidence 33334445677777 899999999999998 99984 6777788775444
No 60
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=70.30 E-value=0.9 Score=33.62 Aligned_cols=20 Identities=35% Similarity=0.891 Sum_probs=0.0
Q ss_pred hHhhcCCCCccccCCCCccc
Q 012298 89 ICKICGESGHFTQGCPSTLG 108 (466)
Q Consensus 89 ~ckicge~ghf~qgcp~tLG 108 (466)
.|-.||+.||++.-||..-+
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~~ 22 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHAH 22 (60)
T ss_dssp --------------------
T ss_pred ccccCCCCCcCHhhCcCCCC
Confidence 58899999999999998644
No 61
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.44 E-value=1.4 Score=33.41 Aligned_cols=19 Identities=26% Similarity=0.572 Sum_probs=17.1
Q ss_pred hhHhhcCCCCccccCCCCc
Q 012298 88 MICKICGESGHFTQGCPST 106 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~t 106 (466)
..|-.||+.||++.-||..
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~ 26 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLP 26 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSC
T ss_pred CcccccCCCCcChhhCCCC
Confidence 5799999999999999964
No 62
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=66.56 E-value=2.4 Score=39.18 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=35.4
Q ss_pred hHHHHHHhhhccccccccccceEEeccCcceeeecchhhHHHHHHh
Q 012298 132 TEKVIQRIEKDISCKIKMDEKFIIVSGKDRLILSKGVDAVHKIIKE 177 (466)
Q Consensus 132 te~vi~~iEkd~gckikm~ekf~~vsgkDRl~l~kgvdaVhk~i~e 177 (466)
.+++|..||..+||+|.+.++-|.|.|.=--| ....++|..+|++
T Consensus 147 ~G~tik~ie~~Tg~~I~v~~~~v~i~G~~~~i-~~A~~~i~~li~g 191 (219)
T 2e3u_A 147 KGRTRQIIEEMSGASVSVYGKTVAIIGNPIQI-EIAKTAIEKLARG 191 (219)
T ss_dssp GGHHHHHHHHHHCCEEEEETTEEEEEECHHHH-HHHHHHHHHHHTT
T ss_pred CchHHHHHHHHhCceEEECCeEEEEEeCHHHH-HHHHHHHHHHHcC
Confidence 78899999999999999999877777754332 5566788888843
No 63
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=63.31 E-value=1.4 Score=35.57 Aligned_cols=21 Identities=33% Similarity=0.901 Sum_probs=18.6
Q ss_pred hhhhHhhcCCCCccccCCCCc
Q 012298 86 EEMICKICGESGHFTQGCPST 106 (466)
Q Consensus 86 eem~ckicge~ghf~qgcp~t 106 (466)
.+..|=.||+.|||+--||..
T Consensus 45 ~~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 45 HTIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp CCCBCSSSSCBSSCGGGCSSC
T ss_pred CCCeecccCCCCcCcccCCcc
Confidence 358899999999999999974
No 64
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=57.24 E-value=3 Score=36.29 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=17.8
Q ss_pred hhhHhhcCCCCccccCCCCc
Q 012298 87 EMICKICGESGHFTQGCPST 106 (466)
Q Consensus 87 em~ckicge~ghf~qgcp~t 106 (466)
...|-.||+.||++..||..
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSC
T ss_pred CCcccEeCCccchhhhCCCC
Confidence 46799999999999999973
No 65
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=52.69 E-value=8 Score=35.28 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=41.8
Q ss_pred cchhhhhh--hHHHHHHhhhccccccccccc--eEEec----cCcceeeecchhhHHHHHH
Q 012298 124 DKHVRALF--TEKVIQRIEKDISCKIKMDEK--FIIVS----GKDRLILSKGVDAVHKIIK 176 (466)
Q Consensus 124 dk~vr~lf--te~vi~~iEkd~gckikm~ek--f~~vs----gkDRl~l~kgvdaVhk~i~ 176 (466)
+..|.+|- .+.+|..|++.+||+|.|+.+ -|.|. ..|-..+-|+.|-|..+..
T Consensus 12 ~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 12 PERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp GGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 34555565 688999999999999999954 55555 4788899999999988664
No 66
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=37.75 E-value=12 Score=34.23 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=32.8
Q ss_pred hHHHHHHhhhccccccccccceEEec-cCcceeeecchhhHHHHHH
Q 012298 132 TEKVIQRIEKDISCKIKMDEKFIIVS-GKDRLILSKGVDAVHKIIK 176 (466)
Q Consensus 132 te~vi~~iEkd~gckikm~ekf~~vs-gkDRl~l~kgvdaVhk~i~ 176 (466)
.+++|..||.-+||+|.++++-|.|. ..|-+ .-.-.||..+|.
T Consensus 116 ~G~tik~iE~~Tg~~I~v~~~~v~i~G~~~~i--~~Ar~~i~~li~ 159 (191)
T 1tua_A 116 GGRARRTIEEMTDTYINVGEYEVAIIGDYERA--MAAKQAIEMLAE 159 (191)
T ss_dssp GGHHHHHHHHHHTCEEEECSSEEEEEEEHHHH--HHHHHHHHHHHT
T ss_pred CccHHHHHHHHHCceEEEcCCEEEEEeChHHH--HHHHHHHHHHHc
Confidence 68899999999999999998755554 45555 445567888774
No 67
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=36.92 E-value=5.1 Score=43.15 Aligned_cols=50 Identities=22% Similarity=0.395 Sum_probs=11.1
Q ss_pred hhhhhh--hHHHHHHhhhcccccccccc-ceEEeccCcceeeecchhhHHHHH
Q 012298 126 HVRALF--TEKVIQRIEKDISCKIKMDE-KFIIVSGKDRLILSKGVDAVHKII 175 (466)
Q Consensus 126 ~vr~lf--te~vi~~iEkd~gckikm~e-kf~~vsgkDRl~l~kgvdaVhk~i 175 (466)
.+++++ ++++|..|..++|++|.+++ .-|.|++.|.-.+.+..+.+..++
T Consensus 580 ki~~vig~gg~~i~~i~~~tg~~idi~ddG~v~I~~~~~~~~~~A~~~i~~i~ 632 (726)
T 4aid_A 580 KIREVIGSGGKVIREIVATTGAKVDINDDGVVKVSASDGAKIKAAIDWIKSIT 632 (726)
T ss_dssp ----------------------------------CCSCHHHHHHHHHC-----
T ss_pred HHHhhcCCCchhHHHHHHHHCCceeEECCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 466777 89999999999999999986 478888899887777766666655
No 68
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=36.18 E-value=10 Score=30.44 Aligned_cols=23 Identities=39% Similarity=0.836 Sum_probs=17.3
Q ss_pred hhhhhHhhcCCC--CccccCCCCcc
Q 012298 85 EEEMICKICGES--GHFTQGCPSTL 107 (466)
Q Consensus 85 eeem~ckicge~--ghf~qgcp~tL 107 (466)
..=|-|.+|--. .-|.|||||+-
T Consensus 16 dkCM~Cs~C~~~p~SdfC~~cps~t 40 (66)
T 2kn0_A 16 GKCMECSVCKNSEKSDFCQNCPSKT 40 (66)
T ss_dssp TEEEESTTCSSCCCCTTTTTCCCCS
T ss_pred HhhcccCcCCCCCCcccccCCCCCC
Confidence 345889999754 56999999863
No 69
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=34.07 E-value=57 Score=24.98 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHHHHHhhhhcchhhhHhhhhhHHHHHHHHHHHHHH
Q 012298 320 TLDELELDYTREAMELGRIRDKEEDEENYKHRETIREMRESYMKK 364 (466)
Q Consensus 320 TlEeLE~eF~dEameL~KerddeEDeENaRHRE~IreIne~Y~eK 364 (466)
|||+|++.. .-..+.-||| |.+++..|+.|
T Consensus 11 s~eEL~~rl--------------~~Ld~~Me~E-i~elr~RY~~K 40 (51)
T 2jo8_A 11 TVEDLQKRL--------------LALDPMMEQE-IEEIRQKYQSK 40 (51)
T ss_dssp CHHHHHHHH--------------HHHHHHHHHH-HHHHHHHHHHH
T ss_pred CHHHHHHHH--------------HHccHHHHHH-HHHHHHHHHHh
Confidence 788888876 2223334444 56777777765
No 70
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=32.97 E-value=8.5 Score=26.21 Aligned_cols=19 Identities=32% Similarity=0.838 Sum_probs=16.7
Q ss_pred hhHhhcCCCCccccCCCCc
Q 012298 88 MICKICGESGHFTQGCPST 106 (466)
Q Consensus 88 m~ckicge~ghf~qgcp~t 106 (466)
-.|.||..-||-|.-|+.+
T Consensus 4 pYCe~CE~FGH~t~~C~d~ 22 (26)
T 2hqh_E 4 PYCEICEMFGHWATNCNDD 22 (26)
T ss_dssp CEETTTTEESSCGGGCCTT
T ss_pred ccchHHHHhCcccccCCcc
Confidence 4699999999999999864
No 71
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=31.52 E-value=1.3e+02 Score=28.99 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q 012298 350 HRETIREMRESYMKKLTQVRAMHAKQWEEFLQLDGQRHQH 389 (466)
Q Consensus 350 HRE~IreIne~Y~eKL~aLRa~hAkrrEEFL~~esq~RQQ 389 (466)
+-..|++|..+.+..|+.|+..|-. +|+=.++.+..++
T Consensus 72 ~~~kv~el~~~q~~el~~l~~~q~~--eE~~~k~~Hl~eq 109 (251)
T 1jad_A 72 LDSQVVELKERLEMELIHLGEEYHD--GIRRRKEQHATEQ 109 (251)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 4468899999999999999999954 6766666666665
No 72
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=27.13 E-value=1.8e+02 Score=27.47 Aligned_cols=63 Identities=11% Similarity=0.210 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHHHHhhhhcchhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 012298 319 KTLDELELDYTREAMELGRIRDKEEDEENYKHRETIREMRESYMKKLTQVRAMHAKQWEEFLQ 381 (466)
Q Consensus 319 qTlEeLE~eF~dEameL~KerddeEDeENaRHRE~IreIne~Y~eKL~aLRa~hAkrrEEFL~ 381 (466)
.--+-||...+.=+.+++|+-.++|+.=.--++--=.+|++.||++|.+|.-.-+.-+.....
T Consensus 25 ~Ak~~Le~~hr~k~~~VmkEW~eae~q~k~l~kadkk~~~~rFQ~~v~aLE~E~~~ErqqL~e 87 (211)
T 3umh_A 25 KAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVE 87 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344678888888888999998888886555455556799999999999999888776665543
No 73
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=26.06 E-value=1.6e+02 Score=29.90 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 012298 351 RETIREMRESYMKKLTQVRAMHAKQWEEFLQL 382 (466)
Q Consensus 351 RE~IreIne~Y~eKL~aLRa~hAkrrEEFL~~ 382 (466)
++++..|-.+.+++|..|+..-.++|+.|+..
T Consensus 352 ~~~~~~i~~~~~~~L~~l~e~d~~~Re~F~~~ 383 (413)
T 4hpq_C 352 AAKLSQILKSCETQLEQINTADLRERQMFLLE 383 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999999999999999999863
No 74
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=22.79 E-value=2.1e+02 Score=25.34 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=37.8
Q ss_pred CCcHHHHHHHHHHHHHHhhhhcchh----------hhHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 012298 318 PKTLDELELDYTREAMELGRIRDKE----------EDEENYKHRETIREMRESYMKKLTQVRAMH 372 (466)
Q Consensus 318 PqTlEeLE~eF~dEameL~Kerdde----------EDeENaRHRE~IreIne~Y~eKL~aLRa~h 372 (466)
+-|+|+|+..|=.+|..|.....+- ...||++ .+.++.+-=.--.+|..||...
T Consensus 67 ~~t~e~i~~~FG~~Va~lV~gvTk~~~~~~~~~~~~q~e~~~-~~d~rvvlIKLADRl~NmR~l~ 130 (178)
T 3nr1_A 67 DTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRLQVEQAP-HSSPGAKLVKLADKLYNLRDLN 130 (178)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCCTTSCHHHHHHHHHHHGG-GSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCHHHHHHHHHHHhccccchhhHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHhh
Confidence 4699999999999999887765442 2345555 2455666666667788887654
No 75
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=21.15 E-value=3.6e+02 Score=25.94 Aligned_cols=61 Identities=10% Similarity=0.115 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhHhhhhhHHH-------HHHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 012298 321 LDELELDYTREAMELGRIRDKEEDEENYKHRET-------IREMRESYMKKLTQVRAMHAKQWEEFLQ 381 (466)
Q Consensus 321 lEeLE~eF~dEameL~KerddeEDeENaRHRE~-------IreIne~Y~eKL~aLRa~hAkrrEEFL~ 381 (466)
-+-||...+.=+.+.+|+-.++|+.=+--++-- =.+|++.||++|.+|.-..+.-|.....
T Consensus 22 k~rLe~~hr~km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~e 89 (239)
T 3k66_A 22 EMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEA 89 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 366888888888888888888887544433322 3689999999999999888877766543
No 76
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=20.80 E-value=1.3e+02 Score=26.69 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHHHHHHHhhhhcchh----------hhHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 012298 318 PKTLDELELDYTREAMELGRIRDKE----------EDEENYKHRETIREMRESYMKKLTQVRAMHA 373 (466)
Q Consensus 318 PqTlEeLE~eF~dEameL~Kerdde----------EDeENaRHRE~IreIne~Y~eKL~aLRa~hA 373 (466)
+-|+|+|+..|=.+|..|.....+- ...||+|. +.+|.+-=.--.+|..||....
T Consensus 69 ~~t~e~i~~~FG~~Va~lV~gvtk~~~~~~~~~~~~q~e~~r~-~d~rvvlIKLADRl~NmR~l~~ 133 (179)
T 3nqw_A 69 DASFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAK-SSCRAKLIKLADKLDNLRDLQV 133 (179)
T ss_dssp SCCHHHHHHHHCHHHHHHHHHTCCCTTSCHHHHHHHHHHSSTT-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCHHHHHHHHHHHhccccCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999887765442 23556553 5566666666778888886543
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.66 E-value=3.3e+02 Score=26.65 Aligned_cols=32 Identities=6% Similarity=-0.031 Sum_probs=18.8
Q ss_pred HHHHhhhhcchhhhHhhhhhHHHHHHHHHHHH
Q 012298 331 EAMELGRIRDKEEDEENYKHRETIREMRESYM 362 (466)
Q Consensus 331 EameL~KerddeEDeENaRHRE~IreIne~Y~ 362 (466)
+.|.-.++..+...+....+++.|.+..+.|+
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 44444444444555566667777777766666
No 78
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=20.57 E-value=3.1e+02 Score=26.03 Aligned_cols=63 Identities=11% Similarity=0.168 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHHHHHHhhhhcchhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 012298 319 KTLDELELDYTREAMELGRIRDKEEDEENYKHRETIREMRESYMKKLTQVRAMHAKQWEEFLQ 381 (466)
Q Consensus 319 qTlEeLE~eF~dEameL~KerddeEDeENaRHRE~IreIne~Y~eKL~aLRa~hAkrrEEFL~ 381 (466)
.--+-||...+.=+.+++|+-.++|+-----.+--=.+|++.||++|.+|.-..+.-+.....
T Consensus 32 ~Ak~rLe~~hr~k~~~VmkEW~eae~q~k~lpkadkk~m~~rFQ~~v~aLE~E~~~ErqqL~e 94 (219)
T 3pmr_A 32 RAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNEHFQSILQTLEEQVSGERQRLVE 94 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334678888888888888888777652111112233689999999999999888877666543
No 79
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=20.14 E-value=31 Score=30.83 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=16.3
Q ss_pred hHHHHHHhhhccccccccc
Q 012298 132 TEKVIQRIEKDISCKIKMD 150 (466)
Q Consensus 132 te~vi~~iEkd~gckikm~ 150 (466)
.+.||..+||++||||+++
T Consensus 23 ~~~~i~~Fek~tGIkV~~~ 41 (333)
T 4gl0_A 23 DPSLITKFEKETGIKVIYQ 41 (333)
T ss_dssp CHHHHHHHHHHHCCEEEEE
T ss_pred CHHHHHHHHHHHCCEEEEE
Confidence 4679999999999999763
Done!