Query 012299
Match_columns 466
No_of_seqs 320 out of 2495
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 01:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1232 Proteins containing th 100.0 5.5E-82 1.2E-86 620.6 26.1 407 51-458 23-432 (511)
2 PLN02805 D-lactate dehydrogena 100.0 1.3E-61 2.9E-66 519.4 43.7 371 76-458 92-467 (555)
3 PRK11230 glycolate oxidase sub 100.0 1.3E-60 2.7E-65 508.5 43.6 371 80-458 19-390 (499)
4 TIGR00387 glcD glycolate oxida 100.0 8.9E-56 1.9E-60 462.6 37.2 332 120-458 1-333 (413)
5 COG0277 GlcD FAD/FMN-containin 100.0 4.6E-53 1E-57 446.3 38.4 368 86-459 2-375 (459)
6 PRK11183 D-lactate dehydrogena 100.0 1.1E-46 2.5E-51 393.9 31.2 367 80-457 3-485 (564)
7 PLN02441 cytokinin dehydrogena 100.0 7.2E-38 1.6E-42 332.2 32.6 340 93-446 41-408 (525)
8 KOG1231 Proteins containing th 100.0 2.5E-40 5.5E-45 333.5 10.4 360 86-457 30-416 (505)
9 PRK11282 glcE glycolate oxidas 100.0 5.6E-38 1.2E-42 319.8 22.1 190 125-317 3-193 (352)
10 TIGR01676 GLDHase galactonolac 100.0 3.1E-33 6.7E-38 296.8 23.0 201 107-318 52-252 (541)
11 TIGR01679 bact_FAD_ox FAD-link 100.0 2.6E-32 5.6E-37 286.0 24.8 198 107-318 2-199 (419)
12 KOG1233 Alkyl-dihydroxyacetone 100.0 1.5E-32 3.4E-37 271.7 20.5 265 65-335 102-381 (613)
13 TIGR01678 FAD_lactone_ox sugar 100.0 3.5E-32 7.7E-37 285.8 22.4 200 107-317 5-204 (438)
14 TIGR01677 pln_FAD_oxido plant- 100.0 5.4E-31 1.2E-35 282.7 22.8 205 105-317 20-234 (557)
15 PLN02465 L-galactono-1,4-lacto 100.0 1.4E-29 3.1E-34 270.8 27.4 201 107-318 87-287 (573)
16 PF01565 FAD_binding_4: FAD bi 100.0 7.1E-29 1.5E-33 221.2 12.8 139 117-256 1-139 (139)
17 PRK13905 murB UDP-N-acetylenol 99.9 1.4E-25 3E-30 225.2 15.3 174 98-293 15-193 (298)
18 PRK14652 UDP-N-acetylenolpyruv 99.9 1.6E-24 3.4E-29 217.4 17.9 192 79-293 3-196 (302)
19 PRK12436 UDP-N-acetylenolpyruv 99.9 9.7E-24 2.1E-28 212.1 18.4 189 81-292 5-197 (305)
20 PRK13906 murB UDP-N-acetylenol 99.9 2.2E-23 4.7E-28 209.7 18.7 193 79-292 3-197 (307)
21 PRK14653 UDP-N-acetylenolpyruv 99.9 1.6E-22 3.4E-27 202.1 15.4 191 79-293 2-194 (297)
22 TIGR00179 murB UDP-N-acetyleno 99.9 2.4E-22 5.1E-27 200.4 13.6 166 110-291 6-174 (284)
23 KOG4730 D-arabinono-1, 4-lacto 99.9 1.3E-21 2.8E-26 198.5 15.2 187 112-308 45-231 (518)
24 PRK13903 murB UDP-N-acetylenol 99.9 5.1E-21 1.1E-25 195.8 16.9 174 99-293 18-197 (363)
25 PRK14649 UDP-N-acetylenolpyruv 99.8 3.5E-20 7.6E-25 185.6 15.2 181 100-293 7-193 (295)
26 PRK14650 UDP-N-acetylenolpyruv 99.8 1.2E-18 2.6E-23 174.0 14.6 183 93-294 12-196 (302)
27 COG0812 MurB UDP-N-acetylmuram 99.8 6.7E-18 1.4E-22 166.4 16.3 189 100-318 7-197 (291)
28 PRK00046 murB UDP-N-acetylenol 99.8 4.5E-18 9.7E-23 172.2 12.0 176 100-292 7-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.7 1.7E-17 3.7E-22 168.0 13.2 143 93-247 9-156 (354)
30 PF02913 FAD-oxidase_C: FAD li 99.6 6.2E-16 1.4E-20 149.1 7.6 162 292-458 1-167 (248)
31 PRK14651 UDP-N-acetylenolpyruv 99.6 4.8E-15 1E-19 146.2 13.8 161 100-292 7-170 (273)
32 KOG1262 FAD-binding protein DI 99.6 3.3E-15 7.2E-20 149.3 7.9 147 165-316 106-252 (543)
33 PRK13904 murB UDP-N-acetylenol 99.4 4E-13 8.8E-18 131.4 10.4 156 99-294 4-161 (257)
34 PRK09799 putative oxidoreducta 97.6 0.0001 2.2E-09 72.9 5.9 144 119-288 4-155 (258)
35 PRK09971 xanthine dehydrogenas 97.4 0.00085 1.8E-08 67.5 10.6 102 119-225 6-119 (291)
36 PF00941 FAD_binding_5: FAD bi 97.4 4.2E-05 9.2E-10 70.9 0.2 103 118-225 3-116 (171)
37 TIGR03312 Se_sel_red_FAD proba 97.4 0.00028 6.1E-09 69.7 5.8 143 120-288 4-154 (257)
38 TIGR02963 xanthine_xdhA xanthi 96.9 0.0014 2.9E-08 70.3 6.4 105 116-225 191-304 (467)
39 TIGR03195 4hydrxCoA_B 4-hydrox 96.7 0.0015 3.2E-08 66.6 4.0 101 119-224 6-117 (321)
40 TIGR03199 pucC xanthine dehydr 96.6 0.0012 2.5E-08 65.6 2.4 97 123-224 1-109 (264)
41 PLN02906 xanthine dehydrogenas 95.6 0.019 4.2E-07 68.8 6.4 104 118-225 229-351 (1319)
42 PLN00192 aldehyde oxidase 95.5 0.026 5.6E-07 67.8 7.3 109 117-225 233-353 (1344)
43 TIGR02969 mam_aldehyde_ox alde 95.2 0.031 6.7E-07 67.1 6.6 104 118-225 237-359 (1330)
44 COG1319 CoxM Aerobic-type carb 94.3 0.088 1.9E-06 52.7 6.2 106 117-226 3-119 (284)
45 COG4630 XdhA Xanthine dehydrog 93.5 0.24 5.2E-06 50.9 7.5 133 112-254 198-340 (493)
46 PF09330 Lact-deh-memb: D-lact 83.2 31 0.00067 34.5 13.2 154 298-457 1-216 (291)
47 KOG0430 Xanthine dehydrogenase 62.0 13 0.00028 43.8 5.4 105 118-227 215-334 (1257)
48 COG4981 Enoyl reductase domain 39.8 37 0.00081 37.0 4.3 32 114-145 149-181 (717)
49 PF14259 RRM_6: RNA recognitio 37.8 1.2E+02 0.0026 22.6 6.0 46 267-316 14-59 (70)
50 PRK04322 peptidyl-tRNA hydrola 37.8 51 0.0011 28.5 4.2 39 105-145 38-76 (113)
51 PF00076 RRM_1: RNA recognitio 36.6 91 0.002 22.8 5.1 48 266-317 13-60 (70)
52 PF15608 PELOTA_1: PELOTA RNA 30.4 55 0.0012 27.7 3.0 32 118-149 58-89 (100)
53 PF07317 YcgR: Flagellar regul 29.7 2.2E+02 0.0047 24.0 6.8 66 124-205 5-70 (108)
54 KOG3282 Uncharacterized conser 29.5 77 0.0017 29.8 4.1 34 112-145 120-153 (190)
55 cd07033 TPP_PYR_DXS_TK_like Py 27.6 78 0.0017 28.4 3.9 29 118-146 125-153 (156)
56 COG1920 Predicted nucleotidylt 25.4 50 0.0011 31.4 2.1 66 119-206 89-160 (210)
57 smart00361 RRM_1 RNA recogniti 23.5 1.7E+02 0.0036 22.3 4.5 39 278-316 15-57 (70)
58 PF02779 Transket_pyr: Transke 23.2 1.1E+02 0.0025 28.0 4.2 33 118-150 139-173 (178)
59 PF01981 PTH2: Peptidyl-tRNA h 22.9 1.4E+02 0.0031 25.5 4.5 37 113-149 47-84 (116)
60 PF13893 RRM_5: RNA recognitio 22.5 2.3E+02 0.0051 20.1 5.0 35 278-316 7-41 (56)
61 KOG2212 Alpha-amylase [Carbohy 21.4 1.9E+02 0.0042 30.1 5.5 65 81-145 41-113 (504)
62 cd02742 GH20_hexosaminidase Be 20.5 94 0.002 31.3 3.2 28 124-151 69-98 (303)
63 cd06568 GH20_SpHex_like A subg 20.4 94 0.002 31.8 3.2 27 125-151 73-101 (329)
64 PF02601 Exonuc_VII_L: Exonucl 20.4 1.4E+02 0.0031 30.0 4.6 35 117-151 42-88 (319)
65 cd02429 PTH2_like Peptidyl-tRN 20.2 1.8E+02 0.0038 25.3 4.4 32 114-145 53-84 (116)
66 cd06565 GH20_GcnA-like Glycosy 20.1 96 0.0021 31.3 3.2 24 123-146 56-79 (301)
No 1
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=5.5e-82 Score=620.63 Aligned_cols=407 Identities=60% Similarity=0.984 Sum_probs=393.9
Q ss_pred cccccceecccccC-ccccccccccccCCCHHHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHH
Q 012299 51 FGNASTIRYRCFGS-EATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEV 129 (466)
Q Consensus 51 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV 129 (466)
+.++...+++.||| +|+.++|+|.|+.++++++..+++|+|++.+.++++++..|++||+.+|+|....|++|+|++||
T Consensus 23 ~~~~~~~~~~~~~sea~~~v~R~p~fa~l~~~Dl~~Fk~iLg~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eV 102 (511)
T KOG1232|consen 23 FNAILTRIRTPFTSEAYPLVQRNPNFAKLDSKDLAYFKSILGKDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEV 102 (511)
T ss_pred chhhhceeecccccccchhhhcCCCcccccHHHHHHHHHHhcccccccChHHHhhhhhHHHHhccCCceEEecCCCHHHH
Confidence 44555677888999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCC
Q 012299 130 SQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDL 209 (466)
Q Consensus 130 ~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~p 209 (466)
++|+++|++.++.|+|+||+|++.|+++|+.+.||+++.+||+|+++|+..++++|+|||+++++.++|+++|+++|.|.
T Consensus 103 S~ILkYCn~~kLAVVPQGGNTgLVGgSVPvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDL 182 (511)
T KOG1232|consen 103 SAILKYCNDRKLAVVPQGGNTGLVGGSVPVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDL 182 (511)
T ss_pred HHHHHhhccccEEEecCCCCcccccCcccchHHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEc
Q 012299 210 GAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHT 289 (466)
Q Consensus 210 gs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l 289 (466)
|+.++|.|||+++|||||.+.+|||+.+.+|+++|+|+|+|+++......+|+|+|||+.++|+||||++||||++++-+
T Consensus 183 gAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~ 262 (511)
T KOG1232|consen 183 GAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILA 262 (511)
T ss_pred CCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeEEEEEcCCHHHHHHHHHHHHHhcCCcceeEEecchhhHHHHHHHhcCCCCCCCCCccceeEEEEecCCchhh
Q 012299 290 PPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESY 369 (466)
Q Consensus 290 ~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~D~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~ 369 (466)
.|+|....++++..++++++++++.++++.++++++||||||+.+++.+.+++.+...|+.++ .++|+|||++|++.++
T Consensus 263 ~~kpksvn~af~gi~sf~~v~k~fv~Aks~L~EILSafElmD~~s~~~~~~~l~~l~~pl~~~-~pFyiLiETsGSn~dh 341 (511)
T KOG1232|consen 263 PPKPKSVNVAFIGIESFDDVQKVFVEAKSNLTEILSAFELMDNASMELVLEYLKDLHFPLEDE-HPFYILIETSGSNKDH 341 (511)
T ss_pred cCCCcceeEEEEccccHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccCCCCccCC-CceEEEEEecCCCccc
Confidence 999999999999999999999999999999999999999999999999999987788999876 8899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCccceEEecCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEccchHHHHHHHHHHHHhhcCC--
Q 012299 370 DREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQRLGKAAY-- 447 (466)
Q Consensus 370 ~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lW~~R~~~~~~~~~~g~~~~~Dv~VP~~~l~e~~~~~~~~~~~~g~-- 447 (466)
++++++++++..++.+.+.|+++++|+.+.+.+|++|+.++.++.+.|.+|+||+++|++.++++++.+++++.+.++
T Consensus 342 D~eKl~afl~d~lek~lIsDGv~a~d~~~~~~lW~~Re~ip~a~~~~g~vyKyDvSLpL~d~Y~lvn~~~eRl~~~~l~~ 421 (511)
T KOG1232|consen 342 DEEKLTAFLEDCLEKGLISDGVLAQDEAEAQKLWKIRESIPEALQKAGGVYKYDVSLPLEDLYNLVNVMKERLGEAALVG 421 (511)
T ss_pred cHHHHHHHHHHhhhhcccccceecCCHHHHHHHHHHHhccHHHHHhcCCEEEeeccccHHHHHHHHHHHHHhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cEeeEEeecCC
Q 012299 448 NFIDYEILFPV 458 (466)
Q Consensus 448 ~~~~~GH~~~~ 458 (466)
.++.|||++|-
T Consensus 422 d~~gyGHlGDg 432 (511)
T KOG1232|consen 422 DIVGYGHLGDG 432 (511)
T ss_pred cccccccccCC
Confidence 45899999985
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.3e-61 Score=519.35 Aligned_cols=371 Identities=25% Similarity=0.354 Sum_probs=323.4
Q ss_pred cCCCHHHHHHHHHhhCCCceeeChhHHHhhhccccccc--CCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCC
Q 012299 76 STLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKY--RGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV 153 (466)
Q Consensus 76 ~~~~~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~--~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~ 153 (466)
...++.++++|++++|++ +.+++..+..|.+||...+ ...|.+|++|+|++||+++|++|+++++||+|+|||||+.
T Consensus 92 ~~~~~~~~~~L~~~l~~~-v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~ 170 (555)
T PLN02805 92 KLVPQELIDELKAILQDN-MTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIE 170 (555)
T ss_pred ccchHHHHHHHHHhcCCc-eecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCC
Confidence 445567889999999855 8999999999999974333 2579999999999999999999999999999999999999
Q ss_pred CCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCcccc
Q 012299 154 GGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRY 233 (466)
Q Consensus 154 g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~y 233 (466)
|++.+..++|+|||++||+|+++|+++.+++||||+++.+|+++|.++|+++|++|++ .+||||++++|++|.++.+|
T Consensus 171 G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~--~~TIGG~ia~n~~G~~s~~y 248 (555)
T PLN02805 171 GHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVRY 248 (555)
T ss_pred CCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCcc--ccChhhHhhCCCcccccCcc
Confidence 9998877899999999999999999999999999999999999999999999999974 58999999999999999999
Q ss_pred ccccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHH
Q 012299 234 GSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLL 313 (466)
Q Consensus 234 G~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~ 313 (466)
|.++|+|+++|||++||++++++....|+++||||+|+++||+|+|||||+++||++|.|+.....++.|++++++.+++
T Consensus 249 G~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av 328 (555)
T PLN02805 249 GTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVA 328 (555)
T ss_pred ccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHH
Confidence 99999999999999999999987777788899999999999999999999999999999999989999999999999999
Q ss_pred HHHHHhcCCcceeEEecchhhHHHHHHHhcCCCCCCCCCccceeEEEEecCCchhhHHHHHHHHHHHHhhCCCccceEEe
Q 012299 314 REAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIA 393 (466)
Q Consensus 314 ~~~~~~~~~~~~a~E~~D~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 393 (466)
.+++. .+..|+++|+||+..++.+..+. . ..++ ..+++++|++|++++ +.+..+.+.+.+.+.+ ..+..++
T Consensus 329 ~~i~~-~g~~psa~ElmD~~~~~~~~~~~-~--~~~p---~~~~Ll~e~~g~~~~-~~~~~~~~~~i~~~~g-~~~~~~a 399 (555)
T PLN02805 329 IATML-SGIQVSRVELLDEVQIRAINMAN-G--KNLP---EAPTLMFEFIGTEAY-AREQTLIVQKIASKHN-GSDFVFA 399 (555)
T ss_pred HHHHh-CCCCcEEEEEECHHHHHHHHHhc-C--CCCC---cceEEEEEEecCcHH-HHHHHHHHHHHHHhCC-CceEEEe
Confidence 88764 46789999999999988876542 2 2233 247899999997654 3444454444444444 3467888
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEEccchHHHHHHHHHHHHhhcCCcEeeEEeecCC
Q 012299 394 QDINQASSFWRIREGIAEALMKAGA---VYKYDLSLPVEKMYDLVEKMRQRLGKAAYNFIDYEILFPV 458 (466)
Q Consensus 394 ~d~~~~~~lW~~R~~~~~~~~~~g~---~~~~Dv~VP~~~l~e~~~~~~~~~~~~g~~~~~~GH~~~~ 458 (466)
.++++.+++|+.|+.+..++....+ .+.+|++||+++|++++++++++++++++.+++|||++|-
T Consensus 400 ~~~~e~~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~~~~~~~~~~gHaGdG 467 (555)
T PLN02805 400 EEPEAKKELWKIRKEALWACFAMEPKYEAMITDVCVPLSHLAELISRSKKELDASPLVCTVIAHAGDG 467 (555)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCC
Confidence 9999999999999998877765432 3789999999999999999999999999999999999874
No 3
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1.3e-60 Score=508.46 Aligned_cols=371 Identities=23% Similarity=0.363 Sum_probs=327.8
Q ss_pred HHHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccC
Q 012299 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (466)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~ 159 (466)
.+++++|++++|.++|.++++.+..|++|+...+...|.+|++|+|++||+++|++|+++++||++||+||++.|++.|.
T Consensus 19 ~~~~~~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~ 98 (499)
T PRK11230 19 TSLLMALREHLPGLEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPL 98 (499)
T ss_pred HHHHHHHHHhcCcceEEcCHHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccC
Confidence 46788999999999999999999999999866778899999999999999999999999999999999999999999998
Q ss_pred CCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCcccccccccc
Q 012299 160 FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGN 239 (466)
Q Consensus 160 ~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~ 239 (466)
.+||+|||++||+|+++|+++++++||||+++.+|+++|.++|+++|++|++...|||||+|++|+||.++.+||.++|+
T Consensus 99 ~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~ 178 (499)
T PRK11230 99 EKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHN 178 (499)
T ss_pred CCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhh
Confidence 88999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHHHh
Q 012299 240 VLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRK 319 (466)
Q Consensus 240 V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (466)
|+++|||++||++++++... +++.||||+++|+||+|+|||||+++||++|.|+.....++.|++++++.+++.++++
T Consensus 179 v~~levVl~~G~i~~~~~~~-~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~- 256 (499)
T PRK11230 179 LLKVEILTLDGEALTLGSDA-LDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA- 256 (499)
T ss_pred eeEEEEEcCCCcEEEeCCcc-CCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh-
Confidence 99999999999999987653 4567999999999999999999999999999999988889999999999999988865
Q ss_pred cCCcceeEEecchhhHHHHHHHhcCCCCCCCCCccceeEEEEecCCchhhHHHHHHHHHHHHhhCCCccceEEecCHHHH
Q 012299 320 LGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQA 399 (466)
Q Consensus 320 ~~~~~~a~E~~D~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 399 (466)
.+..|.++|+||+..++.+.++. ....|.+ ..+++++|++|.+++ +.+.++++.+.+.+.+ ..+..+++++++.
T Consensus 257 ~~~~p~~~el~d~~~~~~~~~~~-~~~~p~~---~~~~ll~e~~g~~~~-v~~~~~~l~~~~~~~g-~~~~~~a~~~~~~ 330 (499)
T PRK11230 257 AGIIPGGLEMMDNLSIRAAEDFI-HAGYPVD---AEAILLCELDGVESD-VQEDCERVNDILLKAG-ATDVRLAQDEAER 330 (499)
T ss_pred cCCCcEEEEeeCHHHHHHHHHhc-CCCCCCC---cceEEEEEecCCchH-HHHHHHHHHHHHHhcC-CceEEEeCCHHHH
Confidence 46679999999999988776653 2233332 357899999998754 4445566655554444 3456677888889
Q ss_pred HHHHHHHHHHHHHHHhcC-CceEEEEEEccchHHHHHHHHHHHHhhcCCcEeeEEeecCC
Q 012299 400 SSFWRIREGIAEALMKAG-AVYKYDLSLPVEKMYDLVEKMRQRLGKAAYNFIDYEILFPV 458 (466)
Q Consensus 400 ~~lW~~R~~~~~~~~~~g-~~~~~Dv~VP~~~l~e~~~~~~~~~~~~g~~~~~~GH~~~~ 458 (466)
+.+|+.|+...+++...+ ..+.+|++||++++++++++++++.+++++.+.+|||+++-
T Consensus 331 ~~~W~~R~~~~~~~~~~~~~~~~~dv~vP~~~l~~~~~~~~~~~~~~~~~~~~~gH~GdG 390 (499)
T PRK11230 331 VRFWAGRKNAFPAVGRISPDYYCMDGTIPRRELPGVLEGIARLSQQYGLRVANVFHAGDG 390 (499)
T ss_pred HHHHHHHHhhHHHHHhhCCCeeEEeecCChHHHHHHHHHHHHHHHHcCCeEEEEEEeCCC
Confidence 999999998777776543 34678999999999999999999999999999999999874
No 4
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=8.9e-56 Score=462.63 Aligned_cols=332 Identities=29% Similarity=0.449 Sum_probs=292.8
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHH
Q 012299 120 LLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLD 199 (466)
Q Consensus 120 vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~ 199 (466)
|++|+|++||+++|++|+++++||+|+|+|||+.|++.|.+++|+|||++||+|+++|+++.+++||||+++.+|+++|.
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~ 80 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVE 80 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHH
Confidence 57899999999999999999999999999999999999877899999999999999999999999999999999999999
Q ss_pred hCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCc
Q 012299 200 DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSL 279 (466)
Q Consensus 200 ~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~Gtl 279 (466)
++|+++|++|++...+||||++++|++|.++.+||.++|+|++++||++||++++++....|+++||||+++++||+|+|
T Consensus 81 ~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~Gtl 160 (413)
T TIGR00387 81 EHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTL 160 (413)
T ss_pred HcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCccc
Confidence 99999999999988899999999999999999999999999999999999999999887778999999999999999999
Q ss_pred eEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHHHhcCCcceeEEecchhhHHHHHHHhcCCCCCCCCCccceeEE
Q 012299 280 GIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVL 359 (466)
Q Consensus 280 GIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~D~~~~~~~~~~~~~~~~~l~~~~~~~~ll 359 (466)
||||+++||++|.|+......+.|++++++.+++.++++ .+..|+++|+||...++.+.++. .. .++.. ..++++
T Consensus 161 Giit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~p~a~el~d~~~~~~~~~~~-~~--~~p~~-~~~~l~ 235 (413)
T TIGR00387 161 GIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIA-AGIIPAGMEFLDNLSIKAVEDIS-GI--GLPKD-AGAILL 235 (413)
T ss_pred eEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHh-cCCCcEEEEccCHHHHHHHHHhc-CC--CCCCC-CceEEE
Confidence 999999999999999988889999999999999988765 46679999999999988776542 22 23322 457899
Q ss_pred EEecCCchhhHHHHHHHHHHHHhhCCCccceEEecCHHHHHHHHHHHHHHHHHHHhcC-CceEEEEEEccchHHHHHHHH
Q 012299 360 IETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMKAG-AVYKYDLSLPVEKMYDLVEKM 438 (466)
Q Consensus 360 ie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lW~~R~~~~~~~~~~g-~~~~~Dv~VP~~~l~e~~~~~ 438 (466)
+|++|.+++ .++.++++.+.+.+.+ ..+..++.++++.+++|+.|+...+.+.... ..+.+|++||+++++++++.+
T Consensus 236 v~~~g~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~ 313 (413)
T TIGR00387 236 VEIDGVHEA-VERDEEKIEQICRKNG-AVDVQIAQDEEERALLWAGRRNAFKAASKLSPLYLIEDGTVPRSKLPEALRGI 313 (413)
T ss_pred EEecCCcHH-HHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHHHHHhHHHHHhhCCCcceeEEecCHHHHHHHHHHH
Confidence 999998754 4555566555554444 3455677888899999999998877776433 346789999999999999999
Q ss_pred HHHHhhcCCcEeeEEeecCC
Q 012299 439 RQRLGKAAYNFIDYEILFPV 458 (466)
Q Consensus 439 ~~~~~~~g~~~~~~GH~~~~ 458 (466)
++.+++++++.++|||+++-
T Consensus 314 ~~~~~~~~~~~~~~gH~g~g 333 (413)
T TIGR00387 314 ADIARKYDFTIANFGHAGDG 333 (413)
T ss_pred HHHHHHcCCeEEEEEEecCC
Confidence 99999999999999999874
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=4.6e-53 Score=446.32 Aligned_cols=368 Identities=35% Similarity=0.561 Sum_probs=319.8
Q ss_pred HHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEE
Q 012299 86 FKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVII 165 (466)
Q Consensus 86 L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvI 165 (466)
+.++++...+.+++.....|..||+ .+...|.+|+.|+|++||+++|++|+++++||+|||+||++.|++.|. ++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~gvvl 79 (459)
T COG0277 2 LKRILGELNVLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-GGVVL 79 (459)
T ss_pred hhHhcCccceecCHHHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-CcEEE
Confidence 5677887778899999999999987 778889999999999999999999999999999999999999999998 79999
Q ss_pred EcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEE
Q 012299 166 NMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEA 245 (466)
Q Consensus 166 dl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~lev 245 (466)
||++||+|+++|+++++++||||+++.+|+++|.++|+++|++|++.+.|||||+|++|++|.++.+||.++|+|+++++
T Consensus 80 ~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~v 159 (459)
T COG0277 80 DLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRV 159 (459)
T ss_pred EchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEE
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred EecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHH---HhcCC
Q 012299 246 VLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK---RKLGE 322 (466)
Q Consensus 246 Vl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 322 (466)
|++||++++++.+..|+++||||+++++||+|+|||||++++|+.|.|+...+.+..+++.+.+........ ...+.
T Consensus 160 V~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (459)
T COG0277 160 VLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGV 239 (459)
T ss_pred EcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999988776443332 22235
Q ss_pred cceeEEecchhhHHHHHHHhcCCCCCCCCCccceeEEEEecCCchhhHHHHHHHHHHHHhhCCCccceEEecCHHHHHHH
Q 012299 323 ILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSF 402 (466)
Q Consensus 323 ~~~a~E~~D~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~l 402 (466)
.+.++|+||.. +............+.. ...++++|+.+.+..........+.+.+.+.+...+..++.+..+...+
T Consensus 240 ~~~~~e~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (459)
T COG0277 240 IPAALEFMDRP-IKAAEAYLGGGALPLE---APARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAEAARL 315 (459)
T ss_pred Cceeeeecchh-HHHHHHhccccCCCCC---CceEEEEEEcCCcHHHHHHHHHHHHHHHHhcCCceeEEEeCCHHHHHHH
Confidence 68999999987 4444444322222322 2367899998877344455566666666665545567788888889999
Q ss_pred HHHHHHHHHHHHhcCC-ceEEEEEEccchHHHHHHHHHHHHhhcC--CcEeeEEeecCCC
Q 012299 403 WRIREGIAEALMKAGA-VYKYDLSLPVEKMYDLVEKMRQRLGKAA--YNFIDYEILFPVQ 459 (466)
Q Consensus 403 W~~R~~~~~~~~~~g~-~~~~Dv~VP~~~l~e~~~~~~~~~~~~g--~~~~~~GH~~~~~ 459 (466)
|..|+.........+. .+.+|+++|.++++++++++.+.+.+++ +.+..|+|+++--
T Consensus 316 ~~~r~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 375 (459)
T COG0277 316 WLARKGALAAAGALGPGVIQEDVVVPLEALPEFLREILALLDKAGLALRVALFGHAGDGN 375 (459)
T ss_pred HHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHHHhcCCCceeeeecccCCCc
Confidence 9999998888776654 6788999999999999999999999997 8999999998754
No 6
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-46 Score=393.87 Aligned_cols=367 Identities=18% Similarity=0.266 Sum_probs=290.7
Q ss_pred HHHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccC
Q 012299 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (466)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~ 159 (466)
..++++|++++|+++|++++..+..|++||. ...+.|.+||+|.|++||+++|++|+++++||+|||||||++||++|.
T Consensus 3 ~~li~~L~~IvG~~~Vltd~~~l~~Y~~D~r-~~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~ 81 (564)
T PRK11183 3 KALINELTRIVGSSHVLTDPAKTERYRKGFR-SGQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPN 81 (564)
T ss_pred HHHHHHHHHhcCcccEecCHHHHHHhccCcc-ccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccC
Confidence 4678999999999999999999999999985 467889999999999999999999999999999999999999999997
Q ss_pred CC-----eEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCC-CCceecCCcCCCccccCcccc
Q 012299 160 FD-----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK-GSCQIGGNVSTNAGGLRLVRY 233 (466)
Q Consensus 160 ~~-----gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~-~~~tvGG~ia~na~G~~~~~y 233 (466)
.+ +|+|||++||+|+++| ++.+++|+|||++.+|+++|+++|+.++++|++. ..|||||+|++|+||.+..+|
T Consensus 82 ~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRg 160 (564)
T PRK11183 82 GNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRG 160 (564)
T ss_pred CCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEc
Confidence 54 7999999999999999 5678999999999999999999999988888553 356899999999999999999
Q ss_pred ccccccEEEEEEEecCCce-------EeccCCcc--c---CCCCC----------------------------------c
Q 012299 234 GSLHGNVLGLEAVLANGDV-------IDMLGTLR--K---DNTGY----------------------------------D 267 (466)
Q Consensus 234 G~~~d~V~~levVl~dG~i-------~~~~~~~~--k---~~~G~----------------------------------d 267 (466)
|.+.++++. ++|++||++ ++.+.+.. + ++.|| |
T Consensus 161 ga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaD 239 (564)
T PRK11183 161 PAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNAD 239 (564)
T ss_pred chhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCC
Confidence 999999999 999999999 66555441 2 57888 9
Q ss_pred hhhhh--hcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHHHhcCCcceeEEecchhhHHHHHHHhcCC
Q 012299 268 LKHLF--IGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGV 345 (466)
Q Consensus 268 L~~l~--~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~D~~~~~~~~~~~~~~ 345 (466)
+.++| .||+|+|||| +++|+++|+|+...++++.++|.+++.++...+...++..|.++|+||+.+++++.+|.+.+
T Consensus 240 l~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~a~Eym~r~~~d~~~~ygkd~ 318 (564)
T PRK11183 240 PRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPVAGEYMHRDAFDIAEKYGKDT 318 (564)
T ss_pred HHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCceeEeecCHHHHHHHHHhCCcc
Confidence 99999 9999999999 99999999999999999999999999999999988788999999999999999888865321
Q ss_pred ---------C------------------CC---------------------CCC------CccceeEEEEecCCchhhHH
Q 012299 346 ---------R------------------NP---------------------FSS------SMHNFYVLIETTGSEESYDR 371 (466)
Q Consensus 346 ---------~------------------~~---------------------l~~------~~~~~~llie~~g~~~~~~~ 371 (466)
. .| +|. +..+.+|++...+...++..
T Consensus 319 ~~~i~~~gt~~~p~~f~~k~~~d~~~~~~~~~~~~~~d~~~q~~~~~~p~~lp~r~~~~r~~y~hhl~lk~~~~~~~e~~ 398 (564)
T PRK11183 319 FLMIDKLGTDKLPKLFALKGRVDAFLEKVPFLPPHFTDRVMQALSKLFPSHLPKRMKDYRDKYEHHLLLKMSGDGIEEAR 398 (564)
T ss_pred EEehhhhCchhHHHHHhhHHHHHHHHHhcCCCCCCCcHHHHHHHHhhChhhcCHHHHHHHHHhhhheeeeecCccHHHHH
Confidence 0 01 010 11345777777776654333
Q ss_pred HHHHHHHHHHhhCCCccceEEecCHHHHHHHHHHHHHHHHHHHh--------cCCceEEEEEEccchHHHHHHHHHHHHh
Q 012299 372 EKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMK--------AGAVYKYDLSLPVEKMYDLVEKMRQRLG 443 (466)
Q Consensus 372 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lW~~R~~~~~~~~~--------~g~~~~~Dv~VP~~~l~e~~~~~~~~~~ 443 (466)
+ +++...... ....+.=+++|.++..-.|-.+..+..+ .......|+++|..+ .+.++.+-+.++
T Consensus 399 ~----~l~~~f~~~--~g~~f~c~~~e~~~a~lhrf~~a~aa~ry~~~~~~~~~~i~~ldial~rn~-~~w~e~lp~~~~ 471 (564)
T PRK11183 399 A----YLKEYFKSA--EGDFFECTPEEGKKAFLHRFAAAGAAIRYRAVHRDEVEDILALDIALRRND-RDWFEHLPPEID 471 (564)
T ss_pred H----HHHHHhhhc--CCCeEeeCHHHHHHHHHHHHHhhhhHHHHHHhhhccccceeeEEeeecCCc-cchHHhCCHHHh
Confidence 3 344333222 1123444555665555555544333221 123457899999754 245555555555
Q ss_pred hcCCcEeeEEeecC
Q 012299 444 KAAYNFIDYEILFP 457 (466)
Q Consensus 444 ~~g~~~~~~GH~~~ 457 (466)
+.=..-..|||++-
T Consensus 472 ~~~~~~~yyghf~c 485 (564)
T PRK11183 472 DQLVHKLYYGHFFC 485 (564)
T ss_pred hhhhhheeccccce
Confidence 54445568899763
No 7
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=7.2e-38 Score=332.23 Aligned_cols=340 Identities=16% Similarity=0.205 Sum_probs=257.5
Q ss_pred CceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHH--hCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCC
Q 012299 93 KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCN--SRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSM 170 (466)
Q Consensus 93 ~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~--~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~l 170 (466)
..+.+++..+..|++||+..+...|.+|++|+|++||+++|++|+ +++++|.+||+||++.|++.+ .+||+|||++|
T Consensus 41 ~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~-~~GivIdms~L 119 (525)
T PLN02441 41 GHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA-PGGVVVDMRSL 119 (525)
T ss_pred ceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC-CCeEEEECCCC
Confidence 458899999999999999888999999999999999999999997 679999999999999998886 57999999999
Q ss_pred CC------eEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEE
Q 012299 171 NN------IITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLE 244 (466)
Q Consensus 171 n~------I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~le 244 (466)
|+ ++++|.+..+|+|++|++|.++.+++.++|+. |.+++....+||||++++++.|..+++||.+.|+|+++|
T Consensus 120 n~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~le 198 (525)
T PLN02441 120 RGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELD 198 (525)
T ss_pred CCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEE
Confidence 99 67899999999999999999999999999987 446666778899999999888888999999999999999
Q ss_pred EEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHHHhcCCcc
Q 012299 245 AVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEIL 324 (466)
Q Consensus 245 vVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (466)
||++||++++++.. .++||+++++|++|+|||||++++|++|.|+......+.+++++++.+.+..+.. +..+
T Consensus 199 VVtadGevv~~s~~-----~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~--~~~~ 271 (525)
T PLN02441 199 VVTGKGEVVTCSPT-----QNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLIS--RPPE 271 (525)
T ss_pred EEeCCceEEEeCCC-----CChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHh--cCCC
Confidence 99999999999754 5679999999999999999999999999999888888889999999999888765 2234
Q ss_pred eeEEecchhhHHH----HHH----HhcCC---C-CCCCCCcccee----EEEEecCCchhhHHHHHHHHHHHHhhCCCcc
Q 012299 325 SAFEFLDNQSMDL----VLT----YLEGV---R-NPFSSSMHNFY----VLIETTGSEESYDREKLEAFLLSSMEGGLIS 388 (466)
Q Consensus 325 ~a~E~~D~~~~~~----~~~----~~~~~---~-~~l~~~~~~~~----llie~~g~~~~~~~~~l~~~~~~~~~~~~~~ 388 (466)
.++|+++...+-- +.. .++.. + ..+... .... +-.+++..++...++..++++..+.-. .
T Consensus 272 ~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~~---~ 347 (525)
T PLN02441 272 NSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSD-GGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSFI---P 347 (525)
T ss_pred CCcceEeEEEEeCCCCceeeeecccCCccccchhhccccC-CceEEEEEEEEeeCCCCccchhhHHHHHHhhcCCC---C
Confidence 4566665433211 000 00000 0 001111 1221 123444444444455566666655311 1
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHhcC----CceEEEEEEccchHHHHHHHHHHHHhhcC
Q 012299 389 DGVIAQDINQASSFWRIREGIAEALMKAG----AVYKYDLSLPVEKMYDLVEKMRQRLGKAA 446 (466)
Q Consensus 389 ~~~~~~d~~~~~~lW~~R~~~~~~~~~~g----~~~~~Dv~VP~~~l~e~~~~~~~~~~~~g 446 (466)
...+.+|..-.+-+-+.+. .-..++..| +.-+.++=||-+++.+|.+.+-+.+-+.+
T Consensus 348 ~~~~~~d~~y~~fl~rv~~-~e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~v~~~i~~~~ 408 (525)
T PLN02441 348 GLLFTTDVSYVDFLDRVHV-EELKLRSKGLWEVPHPWLNLFVPKSRIADFDDGVFKGILLDG 408 (525)
T ss_pred CCceecccCHHHHHHhhhh-HHHHHhhcCCcCCCCchhheeCcHHHHHHHHHHHHhhccccc
Confidence 1234445433333333332 223344444 23467999999999999999888776664
No 8
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=2.5e-40 Score=333.49 Aligned_cols=360 Identities=18% Similarity=0.242 Sum_probs=267.4
Q ss_pred HHHhhCCC---ceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhC--CCeEEEcCCCCCCCCCcccCC
Q 012299 86 FKELLGEK---SVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSR--LLAVVPQGGNTGLVGGSVPVF 160 (466)
Q Consensus 86 L~~ilg~~---~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~--~ipv~~~GgGt~l~g~~~p~~ 160 (466)
+++++|.+ .+..++...+.-++|+...+.-.|.+|+.|+|+|||++++|.|+.+ .+||++||+||++.|++.+..
T Consensus 30 ~~~~l~~~~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~ 109 (505)
T KOG1231|consen 30 LKKILGNSLEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR 109 (505)
T ss_pred hhhhcCccccceeeccchhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC
Confidence 55566632 2344555677778888878888999999999999999999999999 999999999999999999877
Q ss_pred CeEEEEc--C-CCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCC--CcccCCCCCCCceecCCcCCCccccCcccccc
Q 012299 161 DEVIINM--G-SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF--IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS 235 (466)
Q Consensus 161 ~gVvIdl--~-~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl--~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~ 235 (466)
+||+|.| + .|+++-.+..++.+|.|+||..|-+|++++.++|+ +++.||+. .||||++++.+.|...+|||+
T Consensus 110 ~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~---ltVGGtlsnagiggqafRyGp 186 (505)
T KOG1231|consen 110 GGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP---LTVGGTLSNAGIGGQAFRYGP 186 (505)
T ss_pred CCeEEEEehhhccCCCceeecccceEEeeCChhHHHHHHHHHHcCCCccCcCCccc---eeecceeccCccccceeeccc
Confidence 8855544 3 46777667777899999999999999999999999 68888874 789999999999999999999
Q ss_pred ccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCC---cceeEEEE-EcCCHHHHHH
Q 012299 236 LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL---SSVNLAFL-ACKDYFSCQK 311 (466)
Q Consensus 236 ~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p---~~~~~~~~-~~~~~~~~~~ 311 (466)
+.+||++++||+++|++++|.++ .|++|+.+++|++|+|||||+++++|+|+| +....... .|+.++++..
T Consensus 187 qi~NV~~LdVVtgkGeiv~cs~r-----~n~~lf~~vlGglGqfGIITrArI~le~aP~~dQe~lis~~~~fd~veg~~~ 261 (505)
T KOG1231|consen 187 QISNVIELDVVTGKGEIVTCSKR-----ANSNLFFLVLGGLGQFGIITRARIKLEPAPKRDQERLISVCGSFDTVEGAAI 261 (505)
T ss_pred hhhceEEEEEEcCCCcEEecccc-----cCceeeeeeeccCcceeeEEEEEEEeccCCccchHHhhhhhcCCcchhhhhh
Confidence 99999999999999999999876 789999999999999999999999999999 44433344 5666666544
Q ss_pred HHHHHHHhcCCcceeEEecchhhHHHHHHHhcCCCCC------CCCCccceeEEEEecCCchhhHHHHHHHHHHHHhh-C
Q 012299 312 LLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNP------FSSSMHNFYVLIETTGSEESYDREKLEAFLLSSME-G 384 (466)
Q Consensus 312 ~~~~~~~~~~~~~~a~E~~D~~~~~~~~~~~~~~~~~------l~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~-~ 384 (466)
...+... .+...+.+|+.|..-+..+...- .+-+- ++.. ..-.+..|+.+..+..... ...+.+.... .
T Consensus 262 ~~~~gl~-~n~r~s~f~l~D~~~i~~~~~~~-~~~yclev~ky~d~~-e~pti~~e~~~l~~~l~~~-~~~~~~~~v~y~ 337 (505)
T KOG1231|consen 262 VARNGLQ-SNIRVSRFELLDEVQIAAINSDH-STNYCLEVAKYYDLT-EAPTLFQEIGGLSEKLNYA-PTFIVEQDVQYH 337 (505)
T ss_pred hhhcccc-ccceeeccccCcHHHHHHHHhcC-CeeeeeehhhccCcc-cCchHHHHHhccchhhhcc-chhhhhhhhHHH
Confidence 3322211 13446679999998777765431 21111 1111 1124556676654332211 1112222211 1
Q ss_pred CCccceEEecCHHHHHHHHHHHHHHHHHHHhc------CCceEEEEEEccchHHHHHHHHHHHHhhcCCcEeeEEeecC
Q 012299 385 GLISDGVIAQDINQASSFWRIREGIAEALMKA------GAVYKYDLSLPVEKMYDLVEKMRQRLGKAAYNFIDYEILFP 457 (466)
Q Consensus 385 ~~~~~~~~~~d~~~~~~lW~~R~~~~~~~~~~------g~~~~~Dv~VP~~~l~e~~~~~~~~~~~~g~~~~~~GH~~~ 457 (466)
...+...++.+......+|+.||--....... ...+..|++||.++++.++-.+++.++.......+-+|+++
T Consensus 338 ~fldrv~~ae~klrskgLWevphpWlnL~vpks~i~~fa~gv~~dIl~~~s~g~~liyptnk~~kw~~~~sav~ph~~e 416 (505)
T KOG1231|consen 338 DFLDRVHFAEDKLRSKGLWEVPHPWLNLAVPKSRISDFARGVFTDILVPNSSGPVLIYPTNKDLKWSNRLSAVTPHAGE 416 (505)
T ss_pred HhhhHhhhcccchhhcccccCCCchheeecccccchhhhhhhccceeeccCCCceEEeccccCcchhhhhccccccCCC
Confidence 21222456667777788999999632222212 23456899999999999999999988888887888888875
No 9
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=5.6e-38 Score=319.78 Aligned_cols=190 Identities=22% Similarity=0.341 Sum_probs=170.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCC
Q 012299 125 TTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI 204 (466)
Q Consensus 125 s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~ 204 (466)
.++||+++|++|+++++||+|+||||+..++. |. ++++|||++||+|+++|+++.+++|+||+++.+|+++|.++|+.
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~-~~-~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~ 80 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGR-AL-AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQM 80 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCC-CC-CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCe
Confidence 47999999999999999999999998654433 33 46799999999999999999999999999999999999999999
Q ss_pred cccCCCCCC-CceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEE
Q 012299 205 MPLDLGAKG-SCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVT 283 (466)
Q Consensus 205 lp~~pgs~~-~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT 283 (466)
+|++|...+ .+||||++++|++|.++.+||.++|+|+++++|++||++++++.+..||++||||+++++||+|+|||||
T Consensus 81 lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~GtLGVit 160 (352)
T PRK11282 81 LPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLGVLL 160 (352)
T ss_pred eCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCchhhhhe
Confidence 998876554 5899999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred EEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHH
Q 012299 284 KVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (466)
Q Consensus 284 ~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (466)
+++||++|.|+...+..+.++ .+++.+++.++.
T Consensus 161 evtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~ 193 (352)
T PRK11282 161 EVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWG 193 (352)
T ss_pred EEEEEEEecCceEEEEEEecC-HHHHHHHHHHHh
Confidence 999999999998777666654 566666666554
No 10
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=3.1e-33 Score=296.75 Aligned_cols=201 Identities=18% Similarity=0.306 Sum_probs=181.2
Q ss_pred cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEe
Q 012299 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (466)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~ve 186 (466)
++|+..+...|..+++|+|++||+++|+.|++++.+|+++|+|||+.|.+.+ ++++|||++||+|+++|+++++|+|+
T Consensus 52 ~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t--~g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 52 SNWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS--RAGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred cccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC--CCeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 4888888899999999999999999999999999999999999999887775 45689999999999999999999999
Q ss_pred CCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccCCCCC
Q 012299 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (466)
Q Consensus 187 aGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~ 266 (466)
||+++.+|.++|.++|+.+| ++++...+||||++++|++|.+ .+||.++|+|+++++|++||++++++.. ..+
T Consensus 130 AG~~l~~L~~~L~~~Glal~-n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~-----~~p 202 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGITLQ-NFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKD-----KDP 202 (541)
T ss_pred CCCCHHHHHHHHHHcCCEec-cCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCC-----CCH
Confidence 99999999999999999997 5667788999999999999985 5899999999999999999999998754 457
Q ss_pred chhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHHH
Q 012299 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (466)
Q Consensus 267 dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (466)
||+++++||.|+|||||++|||+.|.+......+ ..+++++.+-+.++..
T Consensus 203 dLF~AargslG~LGVItevTLr~~Pa~~l~~~~~--~~~~~e~l~~~~~~~~ 252 (541)
T TIGR01676 203 ELFFLARCGLGGLGVVAEVTLQCVERQELVEHTF--ISNMKDIKKNHKKFLA 252 (541)
T ss_pred HHHHHHhcCCCceEeEEEEEEEEEeccceeEEEE--ecCHHHHHHHHHHHHh
Confidence 9999999999999999999999999998655443 3678888888877654
No 11
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=2.6e-32 Score=285.99 Aligned_cols=198 Identities=20% Similarity=0.314 Sum_probs=173.0
Q ss_pred cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEe
Q 012299 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (466)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~ve 186 (466)
++|+..+...|.+|++|+|++||+++|+.|++ |++++|+||++.+.+. .+|++|||++||+|+++|+++++|+||
T Consensus 2 ~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~--~~g~~idl~~l~~i~~~d~~~~~v~v~ 76 (419)
T TIGR01679 2 SNWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC--TDGTMISLTGLQGVVDVDQPTGLATVE 76 (419)
T ss_pred cCCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc--CCCEEEEhhHcCCceeecCCCCEEEEc
Confidence 36777778899999999999999999999974 7999999999876544 568999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccCCCCC
Q 012299 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (466)
Q Consensus 187 aGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~ 266 (466)
||+++.+|.++|.++|+.+|..|+. +.+||||+++++++|. +.+||.++|+|+++++|++||+++++++. .++
T Consensus 77 aG~~l~~l~~~L~~~G~~l~~~~~~-~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~-----~~~ 149 (419)
T TIGR01679 77 AGTRLGALGPQLAQRGLGLENQGDI-DPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEG-----DDQ 149 (419)
T ss_pred CCCCHHHHHHHHHHcCCccccCCCC-CCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCC-----CCH
Confidence 9999999999999999999865654 4579999999999997 46899999999999999999999998764 568
Q ss_pred chhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHHH
Q 012299 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (466)
Q Consensus 267 dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (466)
||+++++||.|+|||||++|||++|.+...... ...+++++.+.+.++..
T Consensus 150 dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~ 199 (419)
T TIGR01679 150 DMYLAARVSLGALGVISQVTLQTVALFRLRRRD--WRRPLAQTLERLDEFVD 199 (419)
T ss_pred HHHHHHHhCCCceEEEEEEEEEeecceEeEEEE--EecCHHHHHHHHHHHHh
Confidence 999999999999999999999999998755433 33567777777766644
No 12
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=271.68 Aligned_cols=265 Identities=22% Similarity=0.337 Sum_probs=220.2
Q ss_pred ccccccccccccCCCHHHHHHHHHhhCCCceeeChhHHHh----hhc---c----cccccCCCccEEEEcCCHHHHHHHH
Q 012299 65 EATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLA----ANE---D----WMRKYRGSSKLLLQPRTTNEVSQIL 133 (466)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~l~~L~~ilg~~~v~~~~~~~~~----y~~---d----~~~~~~~~p~~vv~P~s~eeV~~iv 133 (466)
.++.+.++..-.--+.+++..|++ .+|..+.+...+ +.+ | |-.++...|+.||.|++.+||.++|
T Consensus 102 k~s~~p~d~P~~VeNedflh~Lke----t~isyS~Ea~dRl~R~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv 177 (613)
T KOG1233|consen 102 KLSDVPIDAPRPVENEDFLHFLKE----TKISYSNEARDRLMRGHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIV 177 (613)
T ss_pred hcccCcccCCCCccchHHHHHHHh----ccCccchhHHHHHHhhcCchHHHHHHHhcCccCCCCceEecccchHHHHHHH
Confidence 566565665555556677777763 334444433222 111 1 3346677899999999999999999
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCcccCCC----eEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCC
Q 012299 134 KYCNSRLLAVVPQGGNTGLVGGSVPVFD----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDL 209 (466)
Q Consensus 134 k~a~~~~ipv~~~GgGt~l~g~~~p~~~----gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~p 209 (466)
+.|.++++-++|.||||+.+++.....+ -+-+|++.||+|+.+|.++.++.+|+|++..+|.+.|.+.|++..+.|
T Consensus 178 ~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEP 257 (613)
T KOG1233|consen 178 ELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEP 257 (613)
T ss_pred HHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCC
Confidence 9999999999999999999776543233 267888999999999999999999999999999999999999999999
Q ss_pred CCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEc
Q 012299 210 GAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHT 289 (466)
Q Consensus 210 gs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l 289 (466)
.|...+|+|||+++.|+|+.-.+||.+.|.|+.+.+|+|.|.+.+. ....+-++|||+.+.+.||||||||||++++|.
T Consensus 258 DS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~-Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKi 336 (613)
T KOG1233|consen 258 DSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQ-CQVPRMSSGPDIHHIILGSEGTLGVITEVTIKI 336 (613)
T ss_pred CceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhh-hcCCcccCCCCcceEEeccCcceeEEEEEEEEE
Confidence 9999999999999999999999999999999999999999976652 233455789999999999999999999999999
Q ss_pred cCCCcceeEEEEEcCCHHHHHHHHHHHHHhcCCcceeEEecchhhH
Q 012299 290 PPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSM 335 (466)
Q Consensus 290 ~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~D~~~~ 335 (466)
+|.|+..+...+.|+++|+-..++.++... .-.|+++.+||+..+
T Consensus 337 rPiPe~~ryGS~aFPNFEqGV~f~REvA~q-RCqPAS~RLMDN~QF 381 (613)
T KOG1233|consen 337 RPIPEVKRYGSFAFPNFEQGVNFFREVAIQ-RCQPASLRLMDNDQF 381 (613)
T ss_pred eechhhhhcCccccCcHHHHHHHHHHHHHH-hcCchheeeecccce
Confidence 999999888889999999999998876432 346899999998754
No 13
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=3.5e-32 Score=285.76 Aligned_cols=200 Identities=25% Similarity=0.381 Sum_probs=179.1
Q ss_pred cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEe
Q 012299 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (466)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~ve 186 (466)
++|+..+...|.+|++|+|++||+++|+.|+++++||+++|+||++++.+. .+|++|||++||+|+++|+++++|+|+
T Consensus 5 ~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~--~~gvvIdl~~l~~i~~id~~~~~vtV~ 82 (438)
T TIGR01678 5 QNWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC--TDGFLIHLDKMNKVLQFDKEKKQITVE 82 (438)
T ss_pred EeCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc--CCeEEEEhhhcCCceEEcCCCCEEEEc
Confidence 468777888999999999999999999999999999999999999977554 568999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccCCCCC
Q 012299 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (466)
Q Consensus 187 aGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~ 266 (466)
||+++.+|.++|.++|+.+|. +++.+.+||||+++++++|. +.+||.++|+|+++++|++||+++++++. .++
T Consensus 83 aG~~l~~L~~~L~~~Gl~l~~-~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~-----~~~ 155 (438)
T TIGR01678 83 AGIRLYQLHEQLDEHGYSMSN-LGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEE-----RNA 155 (438)
T ss_pred CCCCHHHHHHHHHHcCCEecC-CCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCC-----CCh
Confidence 999999999999999999885 55667789999999999996 68999999999999999999999998764 467
Q ss_pred chhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHH
Q 012299 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (466)
Q Consensus 267 dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (466)
||+++.+|+.|+|||||+++||+.|.+..... ....+++++.+.+.+..
T Consensus 156 dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~--~~~~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 156 DVFQAARVSLGCLGIIVTVTIQVVPQFHLQET--SFVSTLKELLDNWDSHW 204 (438)
T ss_pred hHHHHHhcCCCceEeeEEEEEEEEeccceEEE--EecCCHHHHHHHHHHHh
Confidence 99999999999999999999999998775543 35578888888776654
No 14
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.97 E-value=5.4e-31 Score=282.74 Aligned_cols=205 Identities=16% Similarity=0.180 Sum_probs=177.3
Q ss_pred hhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcC-CCCCCCCCcccC--CCeEEEEcCCCCCeEEEeCCCC
Q 012299 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQG-GNTGLVGGSVPV--FDEVIINMGSMNNIITFDKGSG 181 (466)
Q Consensus 105 y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~G-gGt~l~g~~~p~--~~gVvIdl~~ln~I~~id~~~~ 181 (466)
+-++|+..+...|.+|++|+|++||+++|++|+++++||+++| +||++.+.+.+. ++|++|||++||+|+++|.+++
T Consensus 20 ~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~ 99 (557)
T TIGR01677 20 AYGAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAM 99 (557)
T ss_pred chhhcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCC
Confidence 4578999999999999999999999999999999999999995 588887655543 2469999999999889999999
Q ss_pred EEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCc-cccccccccEEEEEEEecCC------ceEe
Q 012299 182 VLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRL-VRYGSLHGNVLGLEAVLANG------DVID 254 (466)
Q Consensus 182 ~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~-~~yG~~~d~V~~levVl~dG------~i~~ 254 (466)
+|+|+||+++.+|.++|.++|+.+|..|.. ..+||||++++|++|.+. .+||.++|+|+++++|++|| ++++
T Consensus 100 tVtV~AG~~l~~L~~~L~~~Glal~~~~~~-~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~ 178 (557)
T TIGR01677 100 TVTVESGMSLRELIVEAEKAGLALPYAPYW-WGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRI 178 (557)
T ss_pred EEEECCCCcHHHHHHHHHHcCCEeccCCCC-CCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEE
Confidence 999999999999999999999999977654 457999999999999866 48899999999999999999 7777
Q ss_pred ccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHH
Q 012299 255 MLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (466)
Q Consensus 255 ~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (466)
++.. .++||+++++|++|+|||||++|||++|.+... ....+...+++.+.+.++.
T Consensus 179 ~s~~-----~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~--~~~~~~~~~~l~~~~~~~~ 234 (557)
T TIGR01677 179 LSEG-----DTPNEFNAAKVSLGVLGVISQVTLALQPMFKRS--VTYTMRDDSDFEDQFVTFG 234 (557)
T ss_pred eCCC-----CCHHHHHhhccCCCccEeeeEEEEEEEccccce--EEEEcCCHHHHHHHHHHhh
Confidence 7643 457999999999999999999999999998733 3445677887777666654
No 15
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.97 E-value=1.4e-29 Score=270.81 Aligned_cols=201 Identities=20% Similarity=0.310 Sum_probs=175.2
Q ss_pred cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEe
Q 012299 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (466)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~ve 186 (466)
++|+......|.+++.|+|++||+++|+.|+++++||+++|+||+..+.... ++.+|||++||+|+++|++.++|+|+
T Consensus 87 ~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~t--d~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 87 SNWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFS--REGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred cccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeC--CCEEEECcCCCCcEEEeCCCCEEEEc
Confidence 4788888899999999999999999999999999999999999998776553 45678999999999999999999999
Q ss_pred CCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccCCCCC
Q 012299 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (466)
Q Consensus 187 aGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~ 266 (466)
||+++.+|.++|.++|+.++. .++....||||+++++++|.+ .+||.+.|+|+++++|+++|++++++.. ..+
T Consensus 165 AG~~l~~L~~~L~~~GLal~n-~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~-----~~p 237 (573)
T PLN02465 165 AGARVQQVVEALRPHGLTLQN-YASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKE-----DDP 237 (573)
T ss_pred cCCCHHHHHHHHHHcCCEecc-CCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCC-----CCH
Confidence 999999999999999999885 445567799999999999974 4799999999999999999999998754 457
Q ss_pred chhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHHH
Q 012299 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (466)
Q Consensus 267 dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (466)
||+++.+++.|+|||||+++|++.|.+......+ ..+++++.+.+.++..
T Consensus 238 dLF~aar~glG~lGVIteVTLql~P~~~L~~~~~--~~~~~~~~~~~~~~~~ 287 (573)
T PLN02465 238 ELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHTF--VSNRKEIKKNHKKWLS 287 (573)
T ss_pred HHHhHhhccCCCCcEEEEEEEEEEecCceEEEEE--EecHHHHHHHHHHHHH
Confidence 9999999999999999999999999987544332 2457777777766644
No 16
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.96 E-value=7.1e-29 Score=221.24 Aligned_cols=139 Identities=29% Similarity=0.524 Sum_probs=130.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHH
Q 012299 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (466)
Q Consensus 117 p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~ 196 (466)
|.+|++|+|++||++++++|+++++|+.++|+||++.+.+. ..++++|||++||+|+++|+++++++|+||+++.+|.+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 78999999999999999999999999999999999987665 36799999999999889999999999999999999999
Q ss_pred HHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEecc
Q 012299 197 FLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDML 256 (466)
Q Consensus 197 ~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~ 256 (466)
+|.++|+.+++++++...+|+||++++|++|..+.+||.++|+|+++++|++||++++++
T Consensus 80 ~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 80 ALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred ccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 999999999988888878899999999999999999999999999999999999999863
No 17
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.93 E-value=1.4e-25 Score=225.25 Aligned_cols=174 Identities=21% Similarity=0.340 Sum_probs=147.2
Q ss_pred ChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCC-CCCeEEE
Q 012299 98 DEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS-MNNIITF 176 (466)
Q Consensus 98 ~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~-ln~I~~i 176 (466)
.+.+++.|+ +.++++.|++++.|+|++||++++++|+++++|++++|+|||+.....+ .+|++||+++ |++| ++
T Consensus 15 ~~~~l~~~~---t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g-~~gvvI~l~~~l~~i-~~ 89 (298)
T PRK13905 15 ENEPLARYT---SFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG-IRGVVIRLGKGLNEI-EV 89 (298)
T ss_pred cCCCccccc---eeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCC-cceEEEEecCCcceE-Ee
Confidence 344677787 6789999999999999999999999999999999999999998654332 2489999998 9987 44
Q ss_pred eCCCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCccccc-cccccEEEEEEEecCCceEe
Q 012299 177 DKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SLHGNVLGLEAVLANGDVID 254 (466)
Q Consensus 177 d~~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG-~~~d~V~~levVl~dG~i~~ 254 (466)
++.+++|+||+++.+|.++|.++|+. +...++.++ ||||++++|+|+ || .++|+|+++++|++||++++
T Consensus 90 --~~~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipG--TVGGai~~NaG~-----~G~~~~d~v~~v~vv~~~G~~~~ 160 (298)
T PRK13905 90 --EGNRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPG--TVGGAVFMNAGA-----YGGETADVLESVEVLDRDGEIKT 160 (298)
T ss_pred --cCCEEEEECCCcHHHHHHHHHHcCCCcchhccCCCc--chhHHHHHcCCc-----CceEhheeEEEEEEEeCCCCEEE
Confidence 45689999999999999999999984 444455554 699999999988 77 69999999999999999998
Q ss_pred ccCCcccCCCCCchhhhhhcCCCC--ceEEEEEEEEccCCC
Q 012299 255 MLGTLRKDNTGYDLKHLFIGSEGS--LGIVTKVSIHTPPKL 293 (466)
Q Consensus 255 ~~~~~~k~~~G~dL~~l~~Gs~Gt--lGIIT~v~l~l~p~p 293 (466)
.... |+.+.++++.+. +||||+++||++|..
T Consensus 161 ~~~~--------e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 161 LSNE--------ELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred EEHH--------HcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 7543 677788877654 799999999999974
No 18
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=1.6e-24 Score=217.43 Aligned_cols=192 Identities=20% Similarity=0.311 Sum_probs=153.7
Q ss_pred CHHHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCccc
Q 012299 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP 158 (466)
Q Consensus 79 ~~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p 158 (466)
+.+.+++|++.+... +..+.+++.|+ +.++++.|+++++|+|++||++++++|+++++|++++|+|||+.-...+
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~l~~~t---t~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g 77 (302)
T PRK14652 3 EATWRDEIARRVRGE--VLRDAPLAPRT---AVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAG 77 (302)
T ss_pred hHHHHHHHHHhhccc--cccCCCccccc---EeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCC
Confidence 456788898888766 34455788888 7799999999999999999999999999999999999999998422211
Q ss_pred CCCeEEEEcCC-CCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCccccccc
Q 012299 159 VFDEVIINMGS-MNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSL 236 (466)
Q Consensus 159 ~~~gVvIdl~~-ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~ 236 (466)
..|++|++++ ++.+ +. ++.+++|+||+.+.+|.+++.++|+. +.+..+.++ ||||++++|+|.. ||.+
T Consensus 78 -~~gvVI~l~~~~~~i-~~--~~~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPG--TvGGav~mNaGa~----ggei 147 (302)
T PRK14652 78 -VRGVVLRLPQDFPGE-ST--DGGRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPG--TLGGAVAMNAGTK----LGEM 147 (302)
T ss_pred -EeeEEEEecCCcceE-Ee--cCCEEEEECCCcHHHHHHHHHHcCCcccccccCCCc--chhHHHHHcCCCC----ceEh
Confidence 1289999987 4544 43 34689999999999999999999997 444344544 6999999999853 7889
Q ss_pred cccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCC
Q 012299 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 293 (466)
Q Consensus 237 ~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p 293 (466)
+|+|.++++|++|| ..+.. ++..+|++.+.+.++ + ||||+++|++.|.+
T Consensus 148 ~d~v~~v~vv~~~G-~~~~~----~~e~~f~YR~s~~~~-~--~II~~a~~~L~~~~ 196 (302)
T PRK14652 148 KDVVTAVELATADG-AGFVP----AAALGYAYRTCRLPP-G--AVITRVEVRLRPGD 196 (302)
T ss_pred hheEEEEEEECCCC-cEEee----hhhcCcccceeccCC-C--eEEEEEEEEEecCC
Confidence 99999999999999 44433 345667777766664 3 89999999999964
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=9.7e-24 Score=212.15 Aligned_cols=189 Identities=18% Similarity=0.328 Sum_probs=150.7
Q ss_pred HHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCC
Q 012299 81 EDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVF 160 (466)
Q Consensus 81 ~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~ 160 (466)
+++++|.++++...+..+ +.++.|++ .++++.|+++++|+|++||++++++|+++++|++++|+|||+...... -
T Consensus 5 ~~~~~l~~~l~~~~~~~~-~~l~~~tt---~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g-~ 79 (305)
T PRK12436 5 EVYEYLSTVLPEGHVKQD-EMLKNHTH---IKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGG-I 79 (305)
T ss_pred HHHHHHHHhcCcCceecC-CcchhccC---cccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCC-e
Confidence 456778888876555555 47888873 368999999999999999999999999999999999999999632221 1
Q ss_pred CeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccccc-ccc
Q 012299 161 DEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHG 238 (466)
Q Consensus 161 ~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~-~~d 238 (466)
+|++|++++|++| +++ +.+++|+||+.+.+|.+++.++|+. +....+.++ ||||++++|+|+ ||. +.|
T Consensus 80 ~GvvI~l~~l~~i-~~~--~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPG--tVGGav~~NAGa-----yG~~~~d 149 (305)
T PRK12436 80 RGITVSLIHITGV-TVT--GTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPG--SVGGALYMNAGA-----YGGEISF 149 (305)
T ss_pred eEEEEEeCCcCcE-EEe--CCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCcc--chhHHHHhcCcc-----chhehhe
Confidence 3899999999988 666 4589999999999999999999986 333234544 499999999998 885 778
Q ss_pred cEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcC--CCCceEEEEEEEEccCC
Q 012299 239 NVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGS--EGSLGIVTKVSIHTPPK 292 (466)
Q Consensus 239 ~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs--~GtlGIIT~v~l~l~p~ 292 (466)
.+.+++++++||++++..++ ++.+.++.| .....||++++|++.|.
T Consensus 150 vl~~v~vv~~~G~v~~~~~~--------e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 150 VLTEAVVMTGDGELRTLTKE--------AFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred eeeEEEEEeCCCCEEEEEHH--------HhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 88899999999999998765 333444444 22347999999999875
No 20
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=2.2e-23 Score=209.72 Aligned_cols=193 Identities=18% Similarity=0.312 Sum_probs=154.1
Q ss_pred CHHHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCccc
Q 012299 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP 158 (466)
Q Consensus 79 ~~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p 158 (466)
+.+++++|+++++...+..+ .+++.|+ +.+.++.|+++++|+|++||++++++|+++++|++++|+|||+......
T Consensus 3 ~~~~~~~l~~~~~~~~v~~~-~~L~~~t---t~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g 78 (307)
T PRK13906 3 NKDIYQALQQLIPNEKIKVD-EPLKRYT---YTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGG 78 (307)
T ss_pred hHHHHHHHHHhcCCCeeecC-Cccccce---EcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCC
Confidence 34578899999976556655 6788888 4577899999999999999999999999999999999999998633222
Q ss_pred CCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCccccc-cc
Q 012299 159 VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SL 236 (466)
Q Consensus 159 ~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG-~~ 236 (466)
.+|++|++++|++| +++. .+++|+||+.+.+|.+++.++|+. +....+.++ ||||++.+|+|+ || .+
T Consensus 79 -~~GvvI~l~~l~~i-~~~~--~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPG--tVGGav~mNaGa-----yGg~i 147 (307)
T PRK13906 79 -IRGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG--SIGGAVYMNAGA-----YGGEV 147 (307)
T ss_pred -cceEEEEecCccce-EEeC--CEEEEECCCcHHHHHHHHHHcCCccchhhcCCCc--cHhHHHHhhCCc-----chhhh
Confidence 24899999999998 6653 589999999999999999999996 333345554 599999999998 75 79
Q ss_pred cccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCC
Q 012299 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 292 (466)
Q Consensus 237 ~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~ 292 (466)
+|+|+++++|++||++++..+.. ...+|.-..+ - .. --||++++|++.|.
T Consensus 148 ~D~l~~v~vv~~~G~~~~~~~~e--~~f~YR~S~~-~--~~-~~ii~~~~~~l~~~ 197 (307)
T PRK13906 148 KDCIDYALCVNEQGSLIKLTTKE--LELDYRNSII-Q--KE-HLVVLEAAFTLAPG 197 (307)
T ss_pred hhheeEEEEEeCCCCEEEEEHHH--ccCcCCcccC-C--CC-CEEEEEEEEEECCC
Confidence 99999999999999999987653 2344532111 1 11 25899999999874
No 21
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.89 E-value=1.6e-22 Score=202.10 Aligned_cols=191 Identities=20% Similarity=0.314 Sum_probs=158.2
Q ss_pred CHHHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCccc
Q 012299 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP 158 (466)
Q Consensus 79 ~~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p 158 (466)
+..+++.|-+-.+. +..+.+++.|+ +.++++.+++++.|+|++|+++++++|++ ++|+.+.|+|||+..+..+
T Consensus 2 ~~~~~~~~~~~~~~---~~~~~~L~~~t---t~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g 74 (297)
T PRK14653 2 TRKIIETLLKYGND---VFINEEMKCHV---SFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEP 74 (297)
T ss_pred chHHHHHHHHhcCe---eccCCcccccC---EeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCC
Confidence 34567777666552 44556788888 78999999999999999999999999999 9999999999999887776
Q ss_pred CCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccccc-c
Q 012299 159 VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-L 236 (466)
Q Consensus 159 ~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~-~ 236 (466)
. +|++|.+.+|++| +++. ..++|+||+.+.+|..++.++|+. |..-.+.|++ |||++.||||+ ||. +
T Consensus 75 ~-~gvVI~l~~~~~i-~i~~--~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPGT--VGGAv~mNAGa-----yG~ei 143 (297)
T PRK14653 75 M-DFVVVSTERLDDI-FVDN--DKIICESGLSLKKLCLVAAKNGLSGFENAYGIPGS--VGGAVYMNAGA-----YGWET 143 (297)
T ss_pred c-cEEEEEeCCcCce-EEeC--CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCchh--HHHHHHHhCcc-----Cchhh
Confidence 4 4899999889998 7763 579999999999999999999995 4443444444 99999999999 898 9
Q ss_pred cccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCC
Q 012299 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 293 (466)
Q Consensus 237 ~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p 293 (466)
+|+|.++++++ +|++++...+ ..+|+..+...++++.+ |||+++|++.|.+
T Consensus 144 ~d~l~~V~~~d-~g~v~~~~~~----e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 144 AENIVEVVAYD-GKKIIRLGKN----EIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred heeEEEEEEEC-CCEEEEEchh----hccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 99999999999 7888877654 35566667777776665 9999999999864
No 22
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.88 E-value=2.4e-22 Score=200.38 Aligned_cols=166 Identities=21% Similarity=0.300 Sum_probs=134.8
Q ss_pred ccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCC
Q 012299 110 MRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGC 189 (466)
Q Consensus 110 ~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv 189 (466)
+.++++.|+++++|+|++||++++++|+++++|++++|+|||+...+.. .++++|++++|+.+ .+++ +.+++|+||+
T Consensus 6 t~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~-~~gvvi~l~~~~~~-~~~~-~~~v~v~aG~ 82 (284)
T TIGR00179 6 TYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDG-RGGVIINLGKGIDI-EDDE-GEYVHVGGGE 82 (284)
T ss_pred eeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCC-cCeEEEECCCCceE-EEec-CCEEEEEcCC
Confidence 5688999999999999999999999999999999999999999876643 46899999999988 4565 5789999999
Q ss_pred cHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccccc-ccccEEEEEEEecCCceEeccCCcccCCCCCc
Q 012299 190 ILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYD 267 (466)
Q Consensus 190 ~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~-~~d~V~~levVl~dG~i~~~~~~~~k~~~G~d 267 (466)
.|.+|.+++.++|+. +....+.++ ||||++++|+|+ ||. +.|.|+++++|++||++++...... ..+|.
T Consensus 83 ~~~~l~~~~~~~Gl~GlE~l~giPG--tvGGai~mNAGa-----yG~~i~d~l~~v~vv~~~G~~~~~~~~~~--~f~YR 153 (284)
T TIGR00179 83 NWHKLVKYALKNGLSGLEFLAGIPG--TVGGAVIMNAGA-----YGVEISEVLVYATILLATGKTEWLTNEQL--GFGYR 153 (284)
T ss_pred cHHHHHHHHHHCCCcccccCCCCCc--hHHHHHHHhccc-----chhehhheEEEEEEEeCCCCEEEEEHHHc--cccCC
Confidence 999999999999994 333334444 599999999999 888 5568899999999999998876532 24443
Q ss_pred hhhhhhcCCCC-ceEEEEEEEEccC
Q 012299 268 LKHLFIGSEGS-LGIVTKVSIHTPP 291 (466)
Q Consensus 268 L~~l~~Gs~Gt-lGIIT~v~l~l~p 291 (466)
-..+ ... ..||+++++++.+
T Consensus 154 ~S~f----~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 154 TSIF----QHKYVGLVLKAEFQLTL 174 (284)
T ss_pred cccc----CCCCcEEEEEEEEEecc
Confidence 2211 111 3699999999843
No 23
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.87 E-value=1.3e-21 Score=198.48 Aligned_cols=187 Identities=18% Similarity=0.201 Sum_probs=154.3
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcH
Q 012299 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCIL 191 (466)
Q Consensus 112 ~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l 191 (466)
+..+++.-|-+|+|++|+.++|+.|++++..+++.|.||+..+-.+ .+|.+|++.+||+++++|++..++|||+|+++
T Consensus 45 r~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~c--tdg~lisl~~lnkVv~~dpe~~tvTV~aGirl 122 (518)
T KOG4730|consen 45 RSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVC--TDGLLISLDKLNKVVEFDPELKTVTVQAGIRL 122 (518)
T ss_pred hhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCccee--ccccEEEhhhhccceeeCchhceEEeccCcCH
Confidence 4455667788899999999999999999999999999999987666 46799999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccCCCCCchhhh
Q 012299 192 ENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHL 271 (466)
Q Consensus 192 ~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l 271 (466)
.||++++++.|+.+|..|... -.+|||++++++||.+..-++.....+.-..+..+||.++.+++. ..+++|++
T Consensus 123 rQLie~~~~~GlsL~~~~si~-e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e-----~dpe~F~A 196 (518)
T KOG4730|consen 123 RQLIEELAKLGLSLPNAPSIS-EQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEE-----KDPELFNA 196 (518)
T ss_pred HHHHHHHHhcCccccCCCcee-cceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEeccc-----CCHHHHhh
Confidence 999999999999999766554 569999999999997543244333344444444579998887765 56799999
Q ss_pred hhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHH
Q 012299 272 FIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFS 308 (466)
Q Consensus 272 ~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~ 308 (466)
..-|.|.||||.+|||++.|.-+...+.. +.+..+
T Consensus 197 AkvSLG~LGVIs~VTl~~vp~Fk~s~t~~--v~n~~d 231 (518)
T KOG4730|consen 197 AKVSLGVLGVISQVTLSVVPAFKRSLTYV--VTNDSD 231 (518)
T ss_pred hhhcccceeEEEEEEEEEEecceeeeEEE--EechHH
Confidence 99999999999999999999977554433 344444
No 24
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=5.1e-21 Score=195.75 Aligned_cols=174 Identities=21% Similarity=0.312 Sum_probs=146.6
Q ss_pred hhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeC
Q 012299 99 EDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDK 178 (466)
Q Consensus 99 ~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~ 178 (466)
+.+++.|+ +.++++.|++++.|+|++|+++++++|+++++|+.++|+|||+.-.... .+|+||+++ ++.+ +++.
T Consensus 18 ~~~L~~~t---t~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g-~~GvVI~l~-~~~i-~i~~ 91 (363)
T PRK13903 18 DVPLAPLT---TLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDG-FDGTVVRVA-TRGV-TVDC 91 (363)
T ss_pred CCCccccc---EeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCC-ccEEEEEeC-CCcE-EEeC
Confidence 34677787 7799999999999999999999999999999999999999998532211 237999997 5887 6776
Q ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccccc-ccccEEEEEEEecC-CceEec
Q 012299 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLAN-GDVIDM 255 (466)
Q Consensus 179 ~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~-~~d~V~~levVl~d-G~i~~~ 255 (466)
++.+++|+||+.|.+|.+++.++|+. |....+.+++ |||++.||+|+ ||. +.|.|.++++++.+ |++++.
T Consensus 92 ~~~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGT--VGGAv~mNaGa-----yG~ei~D~l~sV~vvd~~~G~~~~~ 164 (363)
T PRK13903 92 GGGLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPGS--AGATPVQNVGA-----YGQEVSDTITRVRLLDRRTGEVRWV 164 (363)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHcCCccccccCCCCcc--hhhHhhcCCCh-----hHHHHhhhEeEEEEEECCCCEEEEE
Confidence 66799999999999999999999998 6666667665 99999999999 886 89999999999965 999987
Q ss_pred cCCcccCCCCCchhhhhhcC---CCCceEEEEEEEEccCCC
Q 012299 256 LGTLRKDNTGYDLKHLFIGS---EGSLGIVTKVSIHTPPKL 293 (466)
Q Consensus 256 ~~~~~k~~~G~dL~~l~~Gs---~GtlGIIT~v~l~l~p~p 293 (466)
... |+.+.+++| ++..+|||+++|++.|..
T Consensus 165 ~~~--------el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 165 PAA--------DLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred EHH--------HcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 643 677777776 234789999999999874
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=3.5e-20 Score=185.61 Aligned_cols=181 Identities=17% Similarity=0.218 Sum_probs=143.6
Q ss_pred hHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCC-CeEEEeC
Q 012299 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMN-NIITFDK 178 (466)
Q Consensus 100 ~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln-~I~~id~ 178 (466)
.+++.|+ +.++++.+++++.|+|++|+++++++|+++++|+.+.|+|||+...+.. .+|++|++++++ ++ ..+.
T Consensus 7 ~~L~~~t---t~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g-~~GvVI~l~~~~~~i-~~~~ 81 (295)
T PRK14649 7 EPLAPYT---SWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEG-FDGLVARYRGQRWEL-HEHG 81 (295)
T ss_pred Ccccccc---EeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCC-cCeEEEEecCCCcEE-EEeC
Confidence 3577777 6799999999999999999999999999999999999999999765544 358999998754 55 4555
Q ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccC
Q 012299 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLG 257 (466)
Q Consensus 179 ~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~ 257 (466)
++.+++|+||+.|.+|.+++.++|+. +....+.++ ||||++.+|+|.. ++.+.|+|.++++++.+|++++...
T Consensus 82 ~~~~v~v~AG~~~~~l~~~~~~~GL~GlE~l~GIPG--TvGGa~~mNaGay----g~ei~d~l~~V~~~~~~g~~~~~~~ 155 (295)
T PRK14649 82 DTAEVWVEAGAPMAGTARRLAAQGWAGLEWAEGLPG--TIGGAIYGNAGCY----GGDTATVLIRAWLLLNGSECVEWSV 155 (295)
T ss_pred CcEEEEEEcCCcHHHHHHHHHHcCCccccccCCCCc--chhHHHHhhcccc----ceEhheeEEEEEEEeCCCCEEEEeH
Confidence 54589999999999999999999998 777788887 6999999999983 3359999999999999999998765
Q ss_pred CcccCCCCCchhhhhhcCCCC----ceEEEEEEEEccCCC
Q 012299 258 TLRKDNTGYDLKHLFIGSEGS----LGIVTKVSIHTPPKL 293 (466)
Q Consensus 258 ~~~k~~~G~dL~~l~~Gs~Gt----lGIIT~v~l~l~p~p 293 (466)
... ..||.-.-+.....+. --||++++|++.|..
T Consensus 156 ~el--~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 156 HDF--AYGYRTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred HHc--CcccceeecccccccccccCCeEEEEEEEEECCCC
Confidence 422 2444321111100011 138999999998864
No 26
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=1.2e-18 Score=174.01 Aligned_cols=183 Identities=20% Similarity=0.286 Sum_probs=147.6
Q ss_pred CceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCC
Q 012299 93 KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNN 172 (466)
Q Consensus 93 ~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~ 172 (466)
-++.....+++.|+ +.++++.+++++.|+|.+|+++++++|+++++|+.+.|+|||+.-...+..+|++|.+.+|+.
T Consensus 12 ~~~~~~~~~L~~~t---t~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~ 88 (302)
T PRK14650 12 INIKPQTKNLANYT---TYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEIDFPIIYTGHLNK 88 (302)
T ss_pred cCCCCCCccccccc---eeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccceEEEEECCcCc
Confidence 34556667788888 789999999999999999999999999999999999999999865443212478888867998
Q ss_pred eEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccccc-ccccEEEEEEEecCC
Q 012299 173 IITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANG 250 (466)
Q Consensus 173 I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~-~~d~V~~levVl~dG 250 (466)
+ +++. ..++|+||+.|.+|..++.++|+. |....+.||+ |||++.||+|. ||. +.|.|.++++++.+|
T Consensus 89 i-~~~~--~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNAGa-----yG~ei~d~l~sV~~~d~~g 158 (302)
T PRK14650 89 I-EIHD--NQIVAECGTNFEDLCKFALQNELSGLEFIYGLPGT--LGGAIWMNARC-----FGNEISEILDKITFIDEKG 158 (302)
T ss_pred E-EEeC--CEEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCcc--hhHHHHhhCCc-----cccchheeEEEEEEEECCC
Confidence 8 6653 469999999999999999999998 7766677765 99999999998 886 999999999999999
Q ss_pred ceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCc
Q 012299 251 DVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS 294 (466)
Q Consensus 251 ~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~ 294 (466)
++++...+. ...+|.-..+ . ..-.||++++|++.|.++
T Consensus 159 ~~~~~~~~e--~~f~YR~S~f-~---~~~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 159 KTICKKFKK--EEFKYKISPF-Q---NKNTFILKATLNLKKGNK 196 (302)
T ss_pred CEEEEEHHH--cCcccccccC-C---CCCEEEEEEEEEEcCCCH
Confidence 998866542 2344532211 1 112599999999988653
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=6.7e-18 Score=166.43 Aligned_cols=189 Identities=24% Similarity=0.366 Sum_probs=152.4
Q ss_pred hHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCC
Q 012299 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKG 179 (466)
Q Consensus 100 ~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~ 179 (466)
..++.|+ +.++++.++.++.|++.+|+.+++++|.+.++|+.+.|+|||+.-..-. -++++|.+.+++.+ +++..
T Consensus 7 ~~L~~~t---tfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g-~~gvvi~~~~~~~~-~~~~~ 81 (291)
T COG0812 7 VPLKRYT---TFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGG-IGGVVIKLGKLNFI-EIEGD 81 (291)
T ss_pred Cccccce---eEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCC-CceEEEEcccccce-eeecc
Confidence 3477787 6799999999999999999999999999999999999999997433222 35899999998887 67766
Q ss_pred CCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccccc-ccccEEEEEEEecCCceEeccC
Q 012299 180 SGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDMLG 257 (466)
Q Consensus 180 ~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~-~~d~V~~levVl~dG~i~~~~~ 257 (466)
...+++++|+.|.+|.+++.++|+. |....+.||+ |||++.||+|. ||. +.|.+.++++++.+|++.+...
T Consensus 82 ~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGs--vGgav~mNaGA-----yG~Ei~d~~~~v~~ld~~G~~~~l~~ 154 (291)
T COG0812 82 DGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPGS--VGGAVIMNAGA-----YGVEISDVLVSVEVLDRDGEVRWLSA 154 (291)
T ss_pred CCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCcc--cchhhhccCcc-----cccchheeEEEEEEEcCCCCEEEEEH
Confidence 6699999999999999999999997 7777777776 99999999998 888 9999999999999999999876
Q ss_pred CcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHHH
Q 012299 258 TLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (466)
Q Consensus 258 ~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (466)
...+ .||.-.-+ .....||++|+|++.|- . .+++.+.+.++++
T Consensus 155 ~el~--f~YR~S~f----~~~~~vvl~v~f~L~~~-~-----------~~~I~~~~~~ir~ 197 (291)
T COG0812 155 EELG--FGYRTSPF----KKEYLVVLSVEFKLTKG-D-----------PEDILAAMCAIRR 197 (291)
T ss_pred HHhC--cccccCcC----CCCCEEEEEEEEEeCCC-C-----------HHHHHHHHHHHHH
Confidence 5322 34421111 11228999999999986 2 4455555555543
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.75 E-value=4.5e-18 Score=172.23 Aligned_cols=176 Identities=18% Similarity=0.200 Sum_probs=141.0
Q ss_pred hHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEe-C
Q 012299 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFD-K 178 (466)
Q Consensus 100 ~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id-~ 178 (466)
..++.|+ +.+++|.+++++.|+|++|+++++++|+++++|+.+.|+|||+.-.. + ..|++|.+ +++++ +++ .
T Consensus 7 ~~L~~~t---t~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~-~~g~vI~~-~~~~~-~~~~~ 79 (334)
T PRK00046 7 HSLKPLN---TFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-D-FDGTVLLN-RIKGI-EVLSE 79 (334)
T ss_pred Ccccccc---eeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-C-CCEEEEEe-cCCce-EEEec
Confidence 3577777 67999999999999999999999999999999999999999997665 4 55888887 48888 552 2
Q ss_pred C-C-CEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccccc-ccccEEEEEEEecC-CceE
Q 012299 179 G-S-GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLAN-GDVI 253 (466)
Q Consensus 179 ~-~-~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~-~~d~V~~levVl~d-G~i~ 253 (466)
+ + ..++|+||+.|.+|.+++.++|+. |...-|.+|+ |||++.||+|. ||. +.|.|.++++++.+ |+++
T Consensus 80 ~~~~~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNaGa-----yG~ei~d~l~~V~v~d~~~g~~~ 152 (334)
T PRK00046 80 DDDAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIPGT--VGAAPIQNIGA-----YGVELKDVCDYVEALDLATGEFV 152 (334)
T ss_pred CCCeEEEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCcc--hhHHHHhcCCc-----CcccHheeEEEEEEEECCCCcEE
Confidence 2 2 279999999999999999999997 7766677765 99999999998 886 99999999999987 9998
Q ss_pred eccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCC
Q 012299 254 DMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 292 (466)
Q Consensus 254 ~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~ 292 (466)
+...... ..+|.-..+ ....-.--||++++|++.|.
T Consensus 153 ~~~~~e~--~f~YR~S~f-~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 153 RLSAAEC--RFGYRDSIF-KHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred EEEHHHc--CcccccccC-CCCCcCCEEEEEEEEEecCC
Confidence 8766532 244432211 11000124999999999986
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.74 E-value=1.7e-17 Score=168.02 Aligned_cols=143 Identities=15% Similarity=0.299 Sum_probs=121.7
Q ss_pred CceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCC
Q 012299 93 KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNN 172 (466)
Q Consensus 93 ~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~ 172 (466)
..++..+.+++.|+ +.++++.+++++.|+|.+|+++++++|+++++|+.+.|+|||+.-...+ ..|+||.+.+|+.
T Consensus 9 ~~~~~~~~~La~~t---T~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g-~~G~VI~l~~~~~ 84 (354)
T PRK14648 9 RRITRRNVPLAERC---SFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEG-VPGLMLSLRRFRS 84 (354)
T ss_pred heeeecCCCccccc---eeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCC-ccEEEEEeCCcCc
Confidence 34555666788888 7899999999999999999999999999999999999999998655443 3489999877998
Q ss_pred eEEE---eCCCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccccc-ccccEEEEEEEe
Q 012299 173 IITF---DKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVL 247 (466)
Q Consensus 173 I~~i---d~~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~-~~d~V~~levVl 247 (466)
+ ++ +.+...++|+||+.|.+|.+++.++|+. |....+.||+ |||++.||+|. ||. +.|.|.++++++
T Consensus 85 i-~i~~~~~~~~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGT--VGGAv~mNAGA-----yG~ei~d~l~~V~v~d 156 (354)
T PRK14648 85 L-HTQTQRDGSVLVHAGAGLPVAALLAFCAHHALRGLETFAGLPGS--VGGAAYMNARC-----YGRAIADCFHSARTLV 156 (354)
T ss_pred e-EEeeccCCcEEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCcc--hhhHhhhcCCc-----cceEhhheEEEEEEEe
Confidence 8 44 2222479999999999999999999998 7766677765 99999999998 886 999999999993
No 30
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.62 E-value=6.2e-16 Score=149.08 Aligned_cols=162 Identities=22% Similarity=0.251 Sum_probs=127.8
Q ss_pred CCcceeEEEEEcCCHHHHHHHHHHHHHhcCCcceeEEecchhhHHHHHHHhcCCCCCCCCCccceeEEEEecCCchhhHH
Q 012299 292 KLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDR 371 (466)
Q Consensus 292 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~D~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~ 371 (466)
+|+...+.++.|++++++.+++.++++. +..|+++|+||...++.+.++.+. +.+.. ..+++++|++|.+++.+.
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~-g~~p~a~el~d~~~~~~~~~~~~~---~~~~~-~~~~llv~~~g~~~~~~~ 75 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQS-GIIPSAIELLDSAALKLALEHWGE---PLPPE-GGAVLLVEFEGSDEEAVE 75 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHH-CSSCCECCCCHHHHHHHHHHSEEE---TSSTT-TSEEEEEECCCHHHCCHH
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHc-CCCceEEeeeCHHHHHHHHhhcCC---CccCC-cccEEEEEECCCcHHHHH
Confidence 4788889999999999999999888775 788999999999999998876422 22222 568999999998866666
Q ss_pred HHHHHHHHHHhhCCCccceEEecCHHHHHHHHHHHHHHHHHHH-----hcCCceEEEEEEccchHHHHHHHHHHHHhhcC
Q 012299 372 EKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALM-----KAGAVYKYDLSLPVEKMYDLVEKMRQRLGKAA 446 (466)
Q Consensus 372 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lW~~R~~~~~~~~-----~~g~~~~~Dv~VP~~~l~e~~~~~~~~~~~~g 446 (466)
+.++..+..+.+.....+..++.++++.+++|+.|+.+.+.+. ..+..+.+|++||+++++++++++++++++++
T Consensus 76 ~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~~~~~~~~~~~~~~~ 155 (248)
T PF02913_consen 76 EQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLPEFLREIRALLREYG 155 (248)
T ss_dssp HHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhhhHHHhhhhhhhhcc
Confidence 6665233444444445566788888888899999998887322 22235789999999999999999999999999
Q ss_pred CcEeeEEeecCC
Q 012299 447 YNFIDYEILFPV 458 (466)
Q Consensus 447 ~~~~~~GH~~~~ 458 (466)
+.+.+|||+++.
T Consensus 156 ~~~~~~gH~~~g 167 (248)
T PF02913_consen 156 LEVCHFGHAGDG 167 (248)
T ss_dssp EEEEEEEEEEEC
T ss_pred ccccceEEccCC
Confidence 999999999864
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.62 E-value=4.8e-15 Score=146.19 Aligned_cols=161 Identities=20% Similarity=0.231 Sum_probs=127.1
Q ss_pred hHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCC-CCCeEEEeC
Q 012299 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS-MNNIITFDK 178 (466)
Q Consensus 100 ~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~-ln~I~~id~ 178 (466)
.+++.|+ +.++++++++++ |+|.+|+++++ ++|+.+.|+|||+.-.... ..|++|.+.+ ++.+ +++.
T Consensus 7 ~~L~~~t---t~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g-~~g~vI~l~~~~~~~-~~~~ 74 (273)
T PRK14651 7 VPLARYT---TLGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAG-VPERVIRLGGEFAEW-DLDG 74 (273)
T ss_pred Ccccccc---EeecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCC-cceEEEEECCcceeE-eECC
Confidence 3577787 679999999999 99999999988 4899999999998554432 2478888866 6665 4432
Q ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccccc-ccccEEEEEEEecCCceEecc
Q 012299 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDML 256 (466)
Q Consensus 179 ~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~-~~d~V~~levVl~dG~i~~~~ 256 (466)
+|+||+.|.+|.+++.++|+. |....+.|++ |||++.||+|. ||. +.|.|.++++++ +|++.+..
T Consensus 75 -----~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNaGa-----yG~ei~d~l~~V~~~~-~g~~~~~~ 141 (273)
T PRK14651 75 -----WVGGGVPLPGLVRRAARLGLSGLEGLVGIPAQ--VGGAVKMNAGT-----RFGEMADALHTVEIVH-DGGFHQYS 141 (273)
T ss_pred -----EEECCCcHHHHHHHHHHCCCcchhhhcCCCcc--hhhHHHhhCCc-----cccChheeEEEEEEEE-CCCEEEEE
Confidence 699999999999999999997 7766677765 99999999998 886 999999999997 89999877
Q ss_pred CCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCC
Q 012299 257 GTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 292 (466)
Q Consensus 257 ~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~ 292 (466)
.... ..+|.-..+ .. --||++++|++.|.
T Consensus 142 ~~e~--~f~YR~S~~----~~-~~iIl~a~f~l~~~ 170 (273)
T PRK14651 142 PDEL--GFGYRHSGL----PP-GHVVTRVRLKLRPS 170 (273)
T ss_pred HHHc--cccccccCC----CC-CEEEEEEEEEECCC
Confidence 6532 244432211 11 14999999999885
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.57 E-value=3.3e-15 Score=149.31 Aligned_cols=147 Identities=18% Similarity=0.268 Sum_probs=129.3
Q ss_pred EEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEE
Q 012299 165 INMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLE 244 (466)
Q Consensus 165 Idl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~le 244 (466)
|++..|..|+++|.+..+|+|||+|+++++.++|-+.|+++|+.|- .+..|+||.|.+-+--.+|.+||...+.+.+.|
T Consensus 106 v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~E-ldDlTvGGLinG~Gies~ShkyGlfq~~~~aYE 184 (543)
T KOG1262|consen 106 VPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPE-LDDLTVGGLINGVGIESSSHKYGLFQHICTAYE 184 (543)
T ss_pred CCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecc-cccceecceeeecccccccchhhhHHhhhheeE
Confidence 4455677888999999999999999999999999999999998775 467899999876655667899999999999999
Q ss_pred EEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 245 AVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 245 vVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
||++||+++++..+ |...||+.++-.|+||+|....+++|+.|.-+....-++....+++..+-+.++
T Consensus 185 vVladGelv~~t~d----ne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~e~ 252 (543)
T KOG1262|consen 185 VVLADGELVRVTPD----NEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKITEL 252 (543)
T ss_pred EEecCCeEEEecCC----cccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHHHHHhh
Confidence 99999999998754 456699999999999999999999999999999999999999988876665554
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.44 E-value=4e-13 Score=131.42 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=119.7
Q ss_pred hhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeC
Q 012299 99 EDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDK 178 (466)
Q Consensus 99 ~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~ 178 (466)
+.+++.|+ +.+++|++++++.|++.+ + ++|+.+.|+|||+.-.... .++++ -+++++.+ +++.
T Consensus 4 ~~~L~~~t---t~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g-~~~vv-~~~~~~~~-~~~~ 66 (257)
T PRK13904 4 IIDFSKYS---SVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNP-KNLAI-LGKNFDYI-KIDG 66 (257)
T ss_pred CcchhhcC---ceeECceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCC-ccEEE-EccCcCeE-EEeC
Confidence 45678888 779999999999999987 5 8999999999998654443 23444 34568887 6654
Q ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccccc-ccccEEEEEEEecCCceEecc
Q 012299 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDML 256 (466)
Q Consensus 179 ~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~-~~d~V~~levVl~dG~i~~~~ 256 (466)
..++|+||+.|.+|.+++.++|+. |....+.|++ |||++.||+|. ||. +.|.|.++++++ |+ ..
T Consensus 67 --~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPGt--VGGAv~mNaGa-----~g~ei~d~l~~V~~~~--~~---~~ 132 (257)
T PRK13904 67 --ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPGT--LGGLVKMNAGL-----KEYEISNNLESICTNG--GW---IE 132 (257)
T ss_pred --CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCcc--HHHHHHhcCCc-----CccchheeEEEEEEEe--eE---Ee
Confidence 479999999999999999999998 7766777765 99999999998 886 999999999997 42 22
Q ss_pred CCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCc
Q 012299 257 GTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS 294 (466)
Q Consensus 257 ~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~ 294 (466)
++ ....+|.-..+ . .||++++|++.|.++
T Consensus 133 ~~--e~~f~YR~S~~----~---~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 133 KE--DIGFGYRSSGI----N---GVILEARFKKTHGFD 161 (257)
T ss_pred HH--HCcccccCcCC----C---cEEEEEEEEECCCCH
Confidence 22 12234432211 1 399999999998653
No 34
>PRK09799 putative oxidoreductase; Provisional
Probab=97.58 E-value=0.0001 Score=72.88 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=91.5
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHH
Q 012299 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFL 198 (466)
Q Consensus 119 ~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l 198 (466)
-++.|+|.+|+.++++. ++-...+.+|||.+.-........++||++++ .+..+..+++.++++|++++.++.+..
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~ 79 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDAR 79 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCc
Confidence 47899999999998864 32235678999998322111134689999986 555555567789999999999998753
Q ss_pred HhC-CC-----CcccCCCCCCCceecCCcCCCccccCcccccccc--ccEEEEEEEecCCceEeccCCcccCCCCCchhh
Q 012299 199 DDH-GF-----IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLH--GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKH 270 (466)
Q Consensus 199 ~~~-Gl-----~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~--d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~ 270 (466)
.-. .+ .+. +|...+.+|+||+++++... +.+. =..++.+|++.+|+.+ .+..
T Consensus 80 ~~~~~L~~a~~~va-s~qIRN~aTiGGNl~~a~p~------sD~~p~LlAldA~v~l~~~r~v-------------pl~~ 139 (258)
T PRK09799 80 FIPAALREALGFVY-SRHLRNQSTIGGEIAARQEE------SVLLPVLLALDAELVFGNGETL-------------SIED 139 (258)
T ss_pred ccHHHHHHHHHHhC-CHHHhccchhHHHhhcCCcc------HHHHHHHHHcCCEEEEecCcEE-------------eHHH
Confidence 211 11 122 46677889999999865321 2111 1233455555555322 3345
Q ss_pred hhhcCCCCceEEEEEEEE
Q 012299 271 LFIGSEGSLGIVTKVSIH 288 (466)
Q Consensus 271 l~~Gs~GtlGIIT~v~l~ 288 (466)
+|.|..+ -|||++.+.
T Consensus 140 f~~g~~~--Eil~~I~iP 155 (258)
T PRK09799 140 YLACPCD--RLLTEIIIP 155 (258)
T ss_pred hcCCCCC--cEEEEEEcC
Confidence 5666544 479998774
No 35
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=97.45 E-value=0.00085 Score=67.54 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=68.8
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCc-cc-CCCeEEEEcCCCCCeEEEe-CCCCEEEEeCCCcHHHHH
Q 012299 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-VP-VFDEVIINMGSMNNIITFD-KGSGVLVCEAGCILENLV 195 (466)
Q Consensus 119 ~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~-~p-~~~gVvIdl~~ln~I~~id-~~~~~v~veaGv~l~~L~ 195 (466)
-++.|+|.+|..++++. +. ...+.+|||.+.-.. .. .....+||++++..+..+. .+++.++++|++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 58899999999998874 22 246789999973111 11 1236899999865544454 234679999999999998
Q ss_pred H--HHHhCC-------CCcccCCCCCCCceecCCcCCCc
Q 012299 196 S--FLDDHG-------FIMPLDLGAKGSCQIGGNVSTNA 225 (466)
Q Consensus 196 ~--~l~~~G-------l~lp~~pgs~~~~tvGG~ia~na 225 (466)
+ .+.++- ..+. +|...+.+|+||+|++..
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia-~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIG-GPQIRNVATIGGNICNGA 119 (291)
T ss_pred cChHHHHHhHHHHHHHHHhC-CHHHhcceecccccccCC
Confidence 6 222211 1122 466778999999998653
No 36
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=97.38 E-value=4.2e-05 Score=70.92 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=65.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcc--cCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHH
Q 012299 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (466)
Q Consensus 118 ~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~--p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~ 195 (466)
.-+++|+|.+|+.++++ . + -...+.+|||.+.-.-. .....++||++++..+..+..+++.++++|++++.++.
T Consensus 3 ~~~~~P~sl~ea~~ll~--~-~-~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~ 78 (171)
T PF00941_consen 3 FEYFRPKSLEEALELLA--K-G-PDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELE 78 (171)
T ss_dssp -EEEE-SSHHHHHHHHH--H-G-TTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHH
T ss_pred eEEEccCCHHHHHHHHh--c-C-CCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHHh
Confidence 45889999999999998 2 2 24677899998731111 01236899999865554455556789999999999999
Q ss_pred HH---------HHhCCCCcccCCCCCCCceecCCcCCCc
Q 012299 196 SF---------LDDHGFIMPLDLGAKGSCQIGGNVSTNA 225 (466)
Q Consensus 196 ~~---------l~~~Gl~lp~~pgs~~~~tvGG~ia~na 225 (466)
+. |.+.-..+. +|...+.+|+||++++..
T Consensus 79 ~~~~~~~~~p~L~~~~~~ia-s~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 79 ESPLIQQYFPALAQAARRIA-SPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp HHHHHHHHHHHHHHHHCTSS--HHHHTT-BHHHHHHHTB
T ss_pred hcchhhhhHHHHHHHHHHhC-CHhHeeeeeeccccccCc
Confidence 87 222212222 355568899999996543
No 37
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=97.36 E-value=0.00028 Score=69.71 Aligned_cols=143 Identities=18% Similarity=0.224 Sum_probs=88.4
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHH-
Q 012299 120 LLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFL- 198 (466)
Q Consensus 120 vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l- 198 (466)
+++|+|.+|+.++++- ++-.-.+.+|||.+.-........++||++++ .+..+..+++.++++|++++.++.+..
T Consensus 4 y~~P~sl~Ea~~ll~~---~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~~ 79 (257)
T TIGR03312 4 FFRPESTIQALELKKR---HTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNEL 79 (257)
T ss_pred eECCCCHHHHHHHHHh---CCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCcc
Confidence 6789999999998763 32224567999998422111123688999886 554555556789999999999987632
Q ss_pred -----HhCCCCcccCCCCCCCceecCCcCCCccccCcccccccc--ccEEEEEEEecCCceEeccCCcccCCCCCchhhh
Q 012299 199 -----DDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLH--GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHL 271 (466)
Q Consensus 199 -----~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~--d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l 271 (466)
.+.=..+. +|...+.+|+||++++.... +.+. =..++.++.+.+++.+ .+.++
T Consensus 80 ~~~~L~~aa~~va-~~qIRN~gTlGGNl~~a~p~------~D~~~~LlaldA~v~l~~~r~v-------------p~~dF 139 (257)
T TIGR03312 80 TPAALKEALGFVY-SRHIRNQATIGGEIAAFQSE------SLLLPVLLALKATVVLANASQM-------------DIEDY 139 (257)
T ss_pred hHHHHHHHHHHhC-CHHHhccccHHHHhhcCCCc------hHHHHHHHHcCCEEEEecCcEE-------------eHHHh
Confidence 11111122 56778899999999865422 2111 1233444444433222 34455
Q ss_pred hhcCCCCceEEEEEEEE
Q 012299 272 FIGSEGSLGIVTKVSIH 288 (466)
Q Consensus 272 ~~Gs~GtlGIIT~v~l~ 288 (466)
+.|..| -+||++.+.
T Consensus 140 ~~g~~~--Ell~~V~iP 154 (257)
T TIGR03312 140 LASEQR--ELIVEVIIP 154 (257)
T ss_pred cCCCCC--cEEEEEEcC
Confidence 666555 379988774
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.95 E-value=0.0014 Score=70.31 Aligned_cols=105 Identities=12% Similarity=0.163 Sum_probs=74.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCc--ccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHH
Q 012299 116 SSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILEN 193 (466)
Q Consensus 116 ~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~--~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~ 193 (466)
...-+++|+|.+|+.++++. +. ...+.+|||.+.-.. .-.....+||++++..+..+..+++.++++|++++.+
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~e 266 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTD 266 (467)
T ss_pred CCceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHH
Confidence 34568999999999999874 22 346789999983211 1112368999998665545555567899999999999
Q ss_pred HHHHHHhC--CC-----CcccCCCCCCCceecCCcCCCc
Q 012299 194 LVSFLDDH--GF-----IMPLDLGAKGSCQIGGNVSTNA 225 (466)
Q Consensus 194 L~~~l~~~--Gl-----~lp~~pgs~~~~tvGG~ia~na 225 (466)
+.+.+.++ .+ .+. +|...+.+||||+|++..
T Consensus 267 l~~~l~~~~p~L~~a~~~ia-s~qIRN~aTiGGNI~~as 304 (467)
T TIGR02963 267 AYAALAKRYPELGELLRRFA-SLQIRNAGTLGGNIANGS 304 (467)
T ss_pred HHHHHHHHhHHHHHHHHHhC-CHHHcCceecccccccCC
Confidence 98766543 11 122 466778999999998753
No 39
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=96.70 E-value=0.0015 Score=66.63 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=68.2
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCccc--CCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHH
Q 012299 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP--VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (466)
Q Consensus 119 ~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p--~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~ 196 (466)
-++.|+|.+|..++++-. + .-.+.+|||.+.-.... .....+||+.++..+..+..+++.++++|+|++.++.+
T Consensus 6 ~~~~P~sl~eA~~ll~~~---~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAAH---P-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhhC---C-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 488999999999988743 2 23568999987321111 12368999998654444445567899999999999965
Q ss_pred H--HHh-------CCCCcccCCCCCCCceecCCcCCC
Q 012299 197 F--LDD-------HGFIMPLDLGAKGSCQIGGNVSTN 224 (466)
Q Consensus 197 ~--l~~-------~Gl~lp~~pgs~~~~tvGG~ia~n 224 (466)
. +.+ .=..+. +|...+.+||||++++.
T Consensus 82 ~~~i~~~~p~L~~a~~~ia-s~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 82 DALVRTRWPALAQAARAVA-GPTHRAAATLGGNLCLD 117 (321)
T ss_pred ChhhHhHhHHHHHHHHHhC-CHHHhCceecHHhhhcc
Confidence 3 111 101122 56677899999999964
No 40
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=96.59 E-value=0.0012 Score=65.55 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=67.3
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCccc---CCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHH--
Q 012299 123 PRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP---VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF-- 197 (466)
Q Consensus 123 P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p---~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~-- 197 (466)
|+|.+|+.++++.. . ...+.+|||.+.-.-.. .....+||++++..+..++.+++.++++|++++.++.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 78999999988753 2 34678999988322111 123789999997766666666788999999999999742
Q ss_pred HHhC-------CCCcccCCCCCCCceecCCcCCC
Q 012299 198 LDDH-------GFIMPLDLGAKGSCQIGGNVSTN 224 (466)
Q Consensus 198 l~~~-------Gl~lp~~pgs~~~~tvGG~ia~n 224 (466)
+.++ =..+. +|...+.+|+||++++.
T Consensus 77 i~~~~p~L~~a~~~ia-~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAASAIA-APGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHHHHhc-CHHHhcceecHHhccCc
Confidence 1111 00121 46677899999999865
No 41
>PLN02906 xanthine dehydrogenase
Probab=95.59 E-value=0.019 Score=68.82 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=72.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCc--ccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHH
Q 012299 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (466)
Q Consensus 118 ~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~--~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~ 195 (466)
.-++.|+|.+|+.++++... .-.+.+|||.+.-.. .-....++||++++..+..+..++..++++|++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~~~----~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEYP----DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHhCC----CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 45899999999999876431 245679999983211 111236899999866555555566789999999999999
Q ss_pred HHHHhCCC--------Ccc---------cCCCCCCCceecCCcCCCc
Q 012299 196 SFLDDHGF--------IMP---------LDLGAKGSCQIGGNVSTNA 225 (466)
Q Consensus 196 ~~l~~~Gl--------~lp---------~~pgs~~~~tvGG~ia~na 225 (466)
+.|.+.=. .+| -.|...+.+||||+|++..
T Consensus 305 ~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 305 NLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred HHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 87554310 011 1466678999999998653
No 42
>PLN00192 aldehyde oxidase
Probab=95.55 E-value=0.026 Score=67.84 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=74.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHH
Q 012299 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (466)
Q Consensus 117 p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~ 196 (466)
..-++.|.|.+|+.++++.....+-...+..|||.+.-.-......++||++++..+..+..+++.++++|++++.++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~ 312 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIE 312 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHH
Confidence 34699999999999998742100112556789999732111112368999998665555555667899999999999998
Q ss_pred HHHhCCC---Cccc---------CCCCCCCceecCCcCCCc
Q 012299 197 FLDDHGF---IMPL---------DLGAKGSCQIGGNVSTNA 225 (466)
Q Consensus 197 ~l~~~Gl---~lp~---------~pgs~~~~tvGG~ia~na 225 (466)
.+...-. .+|. .|...+.+||||+|++..
T Consensus 313 ~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 313 ALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred HHHhhccccchHHHHHHHHHHhcChhhccceechhhhcccC
Confidence 7765421 1121 356678899999998653
No 43
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=95.24 E-value=0.031 Score=67.14 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=72.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCc-c-cCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHH
Q 012299 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-V-PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (466)
Q Consensus 118 ~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~-~-p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~ 195 (466)
.-++.|.|.+|+.++++.. . .-.+.+|||.+.-.. . .....++||++++..+..+..+++.++++|++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~~---~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY---P-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC---C-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 4689999999999998743 2 245679999983211 0 11225899999866665566566789999999999999
Q ss_pred HHHHhC----C----CCcc---------cCCCCCCCceecCCcCCCc
Q 012299 196 SFLDDH----G----FIMP---------LDLGAKGSCQIGGNVSTNA 225 (466)
Q Consensus 196 ~~l~~~----G----l~lp---------~~pgs~~~~tvGG~ia~na 225 (466)
+.|.+. . -.+| -.|...+.+||||+|++..
T Consensus 313 ~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 313 DILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRH 359 (1330)
T ss_pred HHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCC
Confidence 876533 0 0011 1466778999999998754
No 44
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=94.34 E-value=0.088 Score=52.73 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=69.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCccc--CCCeEEEEcCCCC-CeEEEeCCCCEEEEeCCCcHHH
Q 012299 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP--VFDEVIINMGSMN-NIITFDKGSGVLVCEAGCILEN 193 (466)
Q Consensus 117 p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p--~~~gVvIdl~~ln-~I~~id~~~~~v~veaGv~l~~ 193 (466)
+--+.+|.|.+|...+++-. + -..+.+|||++.-.... ....-+||++++. .......+++.++++|-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~~---~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLARA---P-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHHhC---C-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 34588999999998888733 3 45567999998521110 1235688988874 2212334566799999999999
Q ss_pred HHHHHHhCCCC--------cccCCCCCCCceecCCcCCCcc
Q 012299 194 LVSFLDDHGFI--------MPLDLGAKGSCQIGGNVSTNAG 226 (466)
Q Consensus 194 L~~~l~~~Gl~--------lp~~pgs~~~~tvGG~ia~na~ 226 (466)
+.+.-.-+... .--+|...+.+||||+++.+..
T Consensus 79 i~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p 119 (284)
T COG1319 79 IARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNADP 119 (284)
T ss_pred HHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccCCC
Confidence 97443222211 1226888899999999766543
No 45
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=93.51 E-value=0.24 Score=50.94 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=84.2
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcc--cCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCC
Q 012299 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGC 189 (466)
Q Consensus 112 ~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~--p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv 189 (466)
.+++..+.++.|.+..|...++.. .- ..++..|+|.+.=... -.+-..+|-...+..+..|+...+.++++||+
T Consensus 198 ~~~~~~~r~~~P~~l~D~a~l~aa--~P--~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgv 273 (493)
T COG4630 198 EVGSGDDRFIVPATLADFADLLAA--HP--GATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGV 273 (493)
T ss_pred EecCCCceeEeeccHHHHHHHHhh--CC--CCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCc
Confidence 345556889999999999998753 22 3455667776521110 00113456666666666677778899999999
Q ss_pred cHHHHHHHHHhCCCCc---ccCCC---CCCCceecCCcCCCccccCccccccc--cccEEEEEEEecCCceEe
Q 012299 190 ILENLVSFLDDHGFIM---PLDLG---AKGSCQIGGNVSTNAGGLRLVRYGSL--HGNVLGLEAVLANGDVID 254 (466)
Q Consensus 190 ~l~~L~~~l~~~Gl~l---p~~pg---s~~~~tvGG~ia~na~G~~~~~yG~~--~d~V~~levVl~dG~i~~ 254 (466)
++.+...+|..+=-.| ..-.| ..+..|+||+|++++- -|.. .=..++..+++-.|+-.+
T Consensus 274 t~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~~~R 340 (493)
T COG4630 274 TYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGDGRR 340 (493)
T ss_pred cHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecCCcc
Confidence 9999999998752111 11112 2467789999987642 2221 114567788887665443
No 46
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=83.24 E-value=31 Score=34.51 Aligned_cols=154 Identities=13% Similarity=0.194 Sum_probs=79.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCcceeEEecchhhHHHHHHHhcCC---------C------------------CCC-
Q 012299 298 LAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGV---------R------------------NPF- 349 (466)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~D~~~~~~~~~~~~~~---------~------------------~~l- 349 (466)
++++..+|.+++.+.=..+...+...|-+.|+|.+.+.++..++...+ . .++
T Consensus 1 VFYIGTNd~~~L~~lRR~iL~~f~~LPisgEYmHRdafdia~~YGKDtfl~I~~lGt~~lP~lFa~K~~~D~~~~k~~~l 80 (291)
T PF09330_consen 1 VFYIGTNDPAVLTDLRRHILSNFKNLPISGEYMHRDAFDIAEKYGKDTFLMIKKLGTDRLPRLFALKARIDALLEKLPFL 80 (291)
T ss_dssp EEEEEES-HHHHHHHHHHHHHH-SS--SEEEEEEHHHHHHH---------------------------------------
T ss_pred CeEeccCCHHHHHHHHHHHHhCCccCChhhhhhhhHHHHHHHHhcchHHHHHHHhCchhHHHHHHHHHHHHHHHHhcCCC
Confidence 467888888887777666666677889999999999998877653211 0 010
Q ss_pred C----------------C----------CccceeEEEEecCCchhhHHHHHHHHHHHHhhCCCccceEEecCHHHHHHHH
Q 012299 350 S----------------S----------SMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFW 403 (466)
Q Consensus 350 ~----------------~----------~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lW 403 (466)
+ . +..+..+++...+...++ .+++++....... ....+.=+++|.++..
T Consensus 81 p~~lsDr~lQ~~s~l~P~hLP~Rm~~yr~ryeHHLilkm~~~gi~e----a~~~L~~~f~~~~-~G~~feCt~~E~~~A~ 155 (291)
T PF09330_consen 81 PPNLSDRVLQALSNLLPNHLPKRMRDYRDRYEHHLILKMSGDGIEE----ARAYLKEFFAKAE-DGDFFECTPEEGKKAF 155 (291)
T ss_dssp ---------------------HHHHHHHHH-SEEEEEEE-TTHHHH----HHHHHHHHCCCSS---EEEE--HHHHHHHH
T ss_pred CCCccHHHHHHHHhhChhhcCHHHHHHHHhhhhheeeeecCCcHHH----HHHHHHHHhcccC-CCceEeeCHHHHHHHH
Confidence 0 0 013457888887765432 3455655544332 1224555666666655
Q ss_pred HHHHHHHHHHHh--------cCCceEEEEEEccchHHHHHHHHHHHHhhcCCcEeeEEeecC
Q 012299 404 RIREGIAEALMK--------AGAVYKYDLSLPVEKMYDLVEKMRQRLGKAAYNFIDYEILFP 457 (466)
Q Consensus 404 ~~R~~~~~~~~~--------~g~~~~~Dv~VP~~~l~e~~~~~~~~~~~~g~~~~~~GH~~~ 457 (466)
-.|=++..+.-+ .+..+..|+++|... .+.++.+-+.+++.=..-..|||.+-
T Consensus 156 LhRFaaAgAaiRY~avh~~~vedivaLDiALrRNd-~dW~E~LP~ei~~~i~~klyyGHF~C 216 (291)
T PF09330_consen 156 LHRFAAAGAAIRYRAVHRKEVEDIVALDIALRRND-RDWFETLPPEIEDQIVHKLYYGHFFC 216 (291)
T ss_dssp HHHTTHHHHHHHHHHHTCCCEECEEEEEEE-BTT--S--S----HHHHTTEEEEEEEEECCC
T ss_pred HHHHHhhhhhHHHHHhccccccceeeeeeeecCCc-hhhhhhCCHHHHHHHHHHeeccccch
Confidence 556554443321 113467899999754 34555666666665456689999763
No 47
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=61.96 E-value=13 Score=43.81 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=68.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHH
Q 012299 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF 197 (466)
Q Consensus 118 ~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~ 197 (466)
.-...|.|.+|+.++++ .........|+|...---...+-.-.||.+.......++.++..+++++++++.++.+.
T Consensus 215 ~~W~~P~sl~eL~~~~~----~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~ 290 (1257)
T KOG0430|consen 215 IRWYWPVSLEELFELKA----NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMEL 290 (1257)
T ss_pred cEEeCcccHHHHHHHHh----cCcceEEEeccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHHH
Confidence 45788999999999987 33445555666664211111122457787765543334444556999999999999988
Q ss_pred HHhCCCCcc---------------cCCCCCCCceecCCcCCCccc
Q 012299 198 LDDHGFIMP---------------LDLGAKGSCQIGGNVSTNAGG 227 (466)
Q Consensus 198 l~~~Gl~lp---------------~~pgs~~~~tvGG~ia~na~G 227 (466)
+.+.-- .| -.+...+.+|+||+|.+.+.+
T Consensus 291 l~~~~~-~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~ 334 (1257)
T KOG0430|consen 291 LRKLVK-RPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQS 334 (1257)
T ss_pred HHHHHh-CcHHHHHHHHHHHHHHhcccceeccccccceeEeccCC
Confidence 866432 11 124456788999999877665
No 48
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=39.78 E-value=37 Score=37.03 Aligned_cols=32 Identities=9% Similarity=0.372 Sum_probs=27.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhC-CCeEEE
Q 012299 114 RGSSKLLLQPRTTNEVSQILKYCNSR-LLAVVP 145 (466)
Q Consensus 114 ~~~p~~vv~P~s~eeV~~ivk~a~~~-~ipv~~ 145 (466)
.|.|-..++|.|.|+|.+++++|.++ ..|+..
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IAka~P~~pIil 181 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIAKANPTFPIIL 181 (717)
T ss_pred cCceeEEecCCcHHHHHHHHHHHhcCCCCceEE
Confidence 46678899999999999999999987 567776
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=37.81 E-value=1.2e+02 Score=22.55 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=34.5
Q ss_pred chhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 267 dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
||..+|. .+|.|.++.+...+.......+++.|.+.+++.+++...
T Consensus 14 ~l~~~f~----~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 14 DLRNFFS----RFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp HHHHHCT----TSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 4555443 246689999988766566788999999999999887664
No 50
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=37.77 E-value=51 Score=28.45 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=31.7
Q ss_pred hhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEE
Q 012299 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVP 145 (466)
Q Consensus 105 y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~ 145 (466)
|..+| ...|.+..|++..|++|+..+.+.|.+.+++...
T Consensus 38 ~~~~W--~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~ 76 (113)
T PRK04322 38 WLEEW--LNEGQKKVVLKVNSEEELLELKEKAERLGLPTAL 76 (113)
T ss_pred HHHHH--HHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 34455 3467899999999999999999999999887543
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=36.64 E-value=91 Score=22.79 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=33.9
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (466)
.+|..+|. .+|.|..+.+...+.......+++.|.+.+++.+++..+.
T Consensus 13 ~~l~~~f~----~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~ 60 (70)
T PF00076_consen 13 EELRDFFS----QFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELN 60 (70)
T ss_dssp HHHHHHHH----TTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHH----HhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcC
Confidence 35666653 3566777776665445566788999999999999887663
No 52
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=30.39 E-value=55 Score=27.72 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=28.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCC
Q 012299 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGN 149 (466)
Q Consensus 118 ~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgG 149 (466)
..+|++.+..|++.++.+|.+.|+||...+.-
T Consensus 58 ~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 58 KVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 66788888899999999999999999998753
No 53
>PF07317 YcgR: Flagellar regulator YcgR; InterPro: IPR009926 This entry represents the N-terminal domain of YcgR proteins. The function of this domain is not known, but it is known to interact with the C-terminal which has cyclic-di-GMP bound []. YcgR is involved in the flagellar motor function and is a member of the flagellar regulon [, ].; PDB: 2GJG_A 3KYF_A.
Probab=29.67 E-value=2.2e+02 Score=24.04 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCC
Q 012299 124 RTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF 203 (466)
Q Consensus 124 ~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl 203 (466)
++..||..+++-..+++.|+.++ .+.+- . .+ ..|+++|++++++....|..-.+-...+...-+
T Consensus 5 ~~p~eI~~~Lr~L~~~~~~l~v~-~~~g~---------~-f~-----T~iL~VD~~~~~l~lD~~~~~~~n~~~l~a~~~ 68 (108)
T PF07317_consen 5 RNPREILAVLRDLAKQRSPLTVR-HPRGQ---------S-FI-----TSILAVDPDRGTLVLDEGSDEEENQRLLNAEEL 68 (108)
T ss_dssp -SHHHHHHHHHHHHHTT--EEEE-TT-SS---------E-EE-----E-EEEEETTTTEEEEE--BSGGGHHHHHTT--E
T ss_pred cCHHHHHHHHHHHHhCCCeEEEE-eCCCC---------E-EE-----EEEEEEeCCCCEEEEEcCCChHHHHHHhcCCcE
Confidence 57899999999999999999998 32221 1 22 367899999999999888877666665554444
Q ss_pred Cc
Q 012299 204 IM 205 (466)
Q Consensus 204 ~l 205 (466)
.+
T Consensus 69 ~~ 70 (108)
T PF07317_consen 69 TF 70 (108)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 54
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.50 E-value=77 Score=29.77 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=30.2
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEE
Q 012299 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVP 145 (466)
Q Consensus 112 ~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~ 145 (466)
...|.|+.||..++++++.++.+.|++.+++...
T Consensus 120 e~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 120 ENCGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHcCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 4678999999999999999999999999887644
No 55
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=27.61 E-value=78 Score=28.44 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=25.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCeEEEc
Q 012299 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQ 146 (466)
Q Consensus 118 ~~vv~P~s~eeV~~ivk~a~~~~ipv~~~ 146 (466)
..|+.|.+.+|+..+++.|-+.+-|+.+|
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 57999999999999999998777788876
No 56
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=25.41 E-value=50 Score=31.41 Aligned_cols=66 Identities=11% Similarity=0.255 Sum_probs=42.1
Q ss_pred EEEEcC-----CHHHHHHHHHHHHhCCCeEEE-cCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHH
Q 012299 119 LLLQPR-----TTNEVSQILKYCNSRLLAVVP-QGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILE 192 (466)
Q Consensus 119 ~vv~P~-----s~eeV~~ivk~a~~~~ipv~~-~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~ 192 (466)
.++.|. ++++|..+++.++...+-+.| +|||||. +.+--+.|+ ++.+ |+...
T Consensus 89 v~vvmaDLPLl~~~~i~~~~~~~~d~dvviaP~~gGGTn~----------L~~r~~~~~-----------~~y~-g~SF~ 146 (210)
T COG1920 89 VIVVMADLPLLSPEHIERALSAAKDADVVIAPGRGGGTNV----------LFARKSAFR-----------PRYG-GVSFL 146 (210)
T ss_pred eEEEecccccCCHHHHHHHHHhcCCCcEEEecCCCCceEE----------EEEeccccc-----------cccc-CccHH
Confidence 455554 579999999999988888887 6888884 233222221 2233 44555
Q ss_pred HHHHHHHhCCCCcc
Q 012299 193 NLVSFLDDHGFIMP 206 (466)
Q Consensus 193 ~L~~~l~~~Gl~lp 206 (466)
+=.+.+.+.|+.+.
T Consensus 147 ~Hl~~Ark~G~~~~ 160 (210)
T COG1920 147 RHLEEARKRGLVVL 160 (210)
T ss_pred HHHHHHHHcCCEEE
Confidence 55566778887644
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=23.48 E-value=1.7e+02 Score=22.31 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=25.3
Q ss_pred CceEEEEEE-EEccCC---CcceeEEEEEcCCHHHHHHHHHHH
Q 012299 278 SLGIVTKVS-IHTPPK---LSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 278 tlGIIT~v~-l~l~p~---p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+|-|+++. +...+. +.....+++.|.+.+++.+|+..+
T Consensus 15 ~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l 57 (70)
T smart00361 15 YFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDL 57 (70)
T ss_pred hcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHh
Confidence 445566664 322221 334566899999999999988765
No 58
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=23.15 E-value=1.1e+02 Score=27.96 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=27.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHh--CCCeEEEcCCCC
Q 012299 118 KLLLQPRTTNEVSQILKYCNS--RLLAVVPQGGNT 150 (466)
Q Consensus 118 ~~vv~P~s~eeV~~ivk~a~~--~~ipv~~~GgGt 150 (466)
..|+.|.+.+|+..+++++-+ .+-|+.++-...
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r~ 173 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPRG 173 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEESS
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeHH
Confidence 679999999999999999988 678998875443
No 59
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=22.89 E-value=1.4e+02 Score=25.47 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=30.2
Q ss_pred cCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEE-cCCC
Q 012299 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVP-QGGN 149 (466)
Q Consensus 113 ~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~-~GgG 149 (466)
..+.+..|+...|++++.++.+.|.+.++|... +-.|
T Consensus 47 ~~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag 84 (116)
T PF01981_consen 47 NNGQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAG 84 (116)
T ss_dssp HTTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETS
T ss_pred cCCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 467889999999999999999999999998644 4444
No 60
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=22.55 E-value=2.3e+02 Score=20.14 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=25.6
Q ss_pred CceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 278 SLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 278 tlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+|-|.++.+--.. ...+++.|.+.+++..++..+
T Consensus 7 ~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l 41 (56)
T PF13893_consen 7 KFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQL 41 (56)
T ss_dssp TTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHH
T ss_pred CcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHh
Confidence 46778888873322 356889999999999888766
No 61
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=21.40 E-value=1.9e+02 Score=30.08 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=46.5
Q ss_pred HHHHHHHHhhCCC---ceeeC--hhHHHhhh--cccccccCCCc-cEEEEcCCHHHHHHHHHHHHhCCCeEEE
Q 012299 81 EDVSYFKELLGEK---SVIQD--EDVLLAAN--EDWMRKYRGSS-KLLLQPRTTNEVSQILKYCNSRLLAVVP 145 (466)
Q Consensus 81 ~~l~~L~~ilg~~---~v~~~--~~~~~~y~--~d~~~~~~~~p-~~vv~P~s~eeV~~ivk~a~~~~ipv~~ 145 (466)
++..|.++.|++. .|... .+.+..+. +.|+.+|++.. +.--+-.++||.+..|+-|++-|+.+.+
T Consensus 41 DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvSYKL~tRSGNE~eF~dMV~RCN~VGVRiyV 113 (504)
T KOG2212|consen 41 DIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVSYKLCTRSGNEDEFRDMVTRCNNVGVRIYV 113 (504)
T ss_pred HHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccceEEeeccCCCHHHHHHHHHHhhccceEEEe
Confidence 5566788888763 24433 34555555 66877776544 4556777999999999999999888765
No 62
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=20.50 E-value=94 Score=31.31 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEc--CCCCC
Q 012299 124 RTTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (466)
Q Consensus 124 ~s~eeV~~ivk~a~~~~ipv~~~--GgGt~ 151 (466)
-|.+|+.+++++|+++||-|+|- .=||.
T Consensus 69 yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 69 YTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred ECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 37899999999999999999983 33444
No 63
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=20.38 E-value=94 Score=31.84 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEc--CCCCC
Q 012299 125 TTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (466)
Q Consensus 125 s~eeV~~ivk~a~~~~ipv~~~--GgGt~ 151 (466)
|.+|+++++++|++.+|-|+|- .=||.
T Consensus 73 T~~di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCcHHH
Confidence 8999999999999999999993 33444
No 64
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.36 E-value=1.4e+02 Score=30.03 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=24.3
Q ss_pred ccEEEEcCC------HHHHHHHHHHHHhC------CCeEEEcCCCCC
Q 012299 117 SKLLLQPRT------TNEVSQILKYCNSR------LLAVVPQGGNTG 151 (466)
Q Consensus 117 p~~vv~P~s------~eeV~~ivk~a~~~------~ipv~~~GgGt~ 151 (466)
...+++|.. ++++.+.++.+++. .+=|.+||||+-
T Consensus 42 ~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~ 88 (319)
T PF02601_consen 42 VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI 88 (319)
T ss_pred cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCCh
Confidence 456666654 67888888888754 466677888764
No 65
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=20.20 E-value=1.8e+02 Score=25.30 Aligned_cols=32 Identities=6% Similarity=0.034 Sum_probs=29.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhCCCeEEE
Q 012299 114 RGSSKLLLQPRTTNEVSQILKYCNSRLLAVVP 145 (466)
Q Consensus 114 ~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~ 145 (466)
.+.+..|+...|++|+.++-+.|.+.++|..+
T Consensus 53 ~g~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l 84 (116)
T cd02429 53 DNMHKVVLEVPDEAALKNLSSKLTENSIKHKL 84 (116)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 56789999999999999999999999998665
No 66
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.07 E-value=96 Score=31.27 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEc
Q 012299 123 PRTTNEVSQILKYCNSRLLAVVPQ 146 (466)
Q Consensus 123 P~s~eeV~~ivk~a~~~~ipv~~~ 146 (466)
+-|.+|+.+++++|+++|+-|+|-
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEec
Confidence 459999999999999999999993
Done!