Query 012299
Match_columns 466
No_of_seqs 320 out of 2495
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 06:41:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pm9_A Putative oxidoreductase 100.0 5.1E-68 1.7E-72 562.1 39.5 379 77-458 12-392 (476)
2 4bby_A Alkyldihydroxyacetoneph 100.0 1.8E-55 6.3E-60 483.1 39.0 373 77-459 159-574 (658)
3 2uuu_A Alkyldihydroxyacetoneph 100.0 4.9E-55 1.7E-59 472.8 33.2 372 77-460 89-499 (584)
4 1f0x_A DLDH, D-lactate dehydro 100.0 3.8E-56 1.3E-60 479.2 17.2 368 80-457 10-492 (571)
5 1e8g_A Vanillyl-alcohol oxidas 100.0 1.1E-52 3.6E-57 453.6 28.7 368 81-457 23-462 (560)
6 1wvf_A 4-cresol dehydrogenase 100.0 6.7E-51 2.3E-55 436.1 30.2 370 81-458 19-432 (520)
7 2exr_A Cytokinin dehydrogenase 100.0 2.1E-49 7.3E-54 424.5 16.4 348 78-445 26-406 (524)
8 1w1o_A Cytokinin dehydrogenase 100.0 5.1E-47 1.8E-51 407.3 19.2 353 78-445 30-421 (534)
9 3tsh_A Pollen allergen PHL P 4 100.0 3.7E-36 1.3E-40 320.5 20.6 231 80-317 9-250 (500)
10 4feh_A Oxidoreductase DPRE1; a 100.0 1.1E-34 3.7E-39 307.3 23.0 219 105-332 32-253 (481)
11 3rja_A Carbohydrate oxidase; p 100.0 1.6E-34 5.4E-39 305.7 21.4 220 91-317 11-234 (473)
12 1hsk_A UDP-N-acetylenolpyruvoy 100.0 1.4E-36 4.6E-41 307.2 2.7 267 77-383 13-299 (326)
13 2bvf_A 6-hydroxy-D-nicotine ox 100.0 3E-34 1E-38 302.8 19.9 211 98-317 20-234 (459)
14 2vfr_A Xylitol oxidase, aldito 100.0 1.8E-34 6E-39 301.4 15.2 211 107-336 11-222 (422)
15 3fw9_A Reticuline oxidase; BI- 100.0 6.6E-34 2.2E-38 302.2 19.3 204 106-318 35-243 (495)
16 3vte_A Tetrahydrocannabinolic 100.0 1.4E-33 4.8E-38 300.7 19.9 206 107-319 44-252 (518)
17 1zr6_A Glucooligosaccharide ox 100.0 1.2E-33 4.2E-38 301.2 19.0 225 83-316 6-236 (503)
18 2wdx_A Putative hexose oxidase 100.0 3.3E-33 1.1E-37 299.1 21.0 205 97-304 37-258 (523)
19 2ipi_A Aclacinomycin oxidoredu 100.0 7.5E-33 2.6E-37 296.2 21.9 203 90-295 28-246 (521)
20 3pop_A GILR oxidase; FAD bindi 100.0 1.4E-32 4.8E-37 292.5 19.0 195 90-289 8-208 (501)
21 2y3s_A TAML; oxidoreductase; H 100.0 7.9E-32 2.7E-36 288.7 22.3 195 97-294 39-249 (530)
22 2i0k_A Oxidoreductase; MIX alp 100.0 2.2E-30 7.6E-35 279.3 16.8 201 99-311 18-239 (561)
23 3tx1_A UDP-N-acetylenolpyruvoy 100.0 7.7E-31 2.6E-35 264.2 11.9 196 78-294 20-217 (322)
24 3js8_A Cholesterol oxidase; ch 100.0 3.3E-30 1.1E-34 274.3 16.8 194 106-311 19-235 (540)
25 1uxy_A MURB, uridine diphospho 99.9 9.9E-26 3.4E-30 228.5 20.0 203 102-320 3-215 (340)
26 3i99_A UDP-N-acetylenolpyruvoy 99.9 2.5E-26 8.4E-31 233.9 15.3 216 100-332 17-246 (357)
27 2gqt_A UDP-N-acetylenolpyruvyl 99.9 1.1E-24 3.9E-29 213.7 10.0 178 101-318 10-189 (268)
28 2yvs_A Glycolate oxidase subun 99.9 4.2E-24 1.4E-28 204.0 9.6 128 175-307 2-129 (219)
29 1ffv_C CUTM, flavoprotein of c 98.6 5E-08 1.7E-12 96.3 6.6 156 117-292 5-177 (287)
30 3nvz_B Xanthine dehydrogenase/ 97.9 1.9E-05 6.4E-10 78.5 8.2 127 112-251 5-157 (305)
31 2w3s_A Xanthine dehydrogenase; 97.9 3.8E-06 1.3E-10 88.2 3.2 123 115-251 175-313 (462)
32 1n62_C Carbon monoxide dehydro 97.8 1.3E-05 4.3E-10 79.1 5.2 147 117-291 5-176 (288)
33 1t3q_C Quinoline 2-oxidoreduct 97.4 0.00013 4.5E-09 71.8 5.2 149 117-291 5-175 (288)
34 3hrd_C Nicotinate dehydrogenas 96.6 0.00039 1.3E-08 68.7 0.9 104 118-224 4-118 (296)
35 1rm6_B 4-hydroxybenzoyl-COA re 95.7 0.0023 7.7E-08 64.0 0.9 94 119-223 8-118 (324)
36 3unc_A Xanthine dehydrogenase/ 95.2 0.019 6.5E-07 67.3 6.3 108 113-225 229-356 (1332)
37 3zyv_A AOH1; oxidoreductase, m 87.1 0.14 4.7E-06 60.3 0.6 106 115-224 238-362 (1335)
38 2vfr_A Xylitol oxidase, aldito 81.8 1.1 3.6E-05 45.9 4.3 43 418-461 289-336 (422)
39 1rzw_A Protein AF2095(GR4); be 41.9 37 0.0013 28.5 5.3 43 106-150 40-83 (123)
40 1xty_A PTH, peptidyl-tRNA hydr 41.9 46 0.0016 27.7 5.8 45 103-149 43-88 (120)
41 3s8s_A Histone-lysine N-methyl 39.8 52 0.0018 26.4 5.8 47 266-316 21-68 (110)
42 1wn2_A Peptidyl-tRNA hydrolase 35.1 38 0.0013 28.3 4.2 38 112-149 51-89 (121)
43 2dnh_A Bruno-like 5, RNA bindi 35.1 73 0.0025 24.6 5.9 47 266-316 30-76 (105)
44 2do4_A Squamous cell carcinoma 34.3 77 0.0026 24.3 5.9 47 266-316 32-78 (100)
45 3ulh_A THO complex subunit 4; 34.3 72 0.0025 24.8 5.7 47 266-316 44-90 (107)
46 4fxv_A ELAV-like protein 1; RN 32.1 82 0.0028 24.5 5.7 64 248-316 17-81 (99)
47 2ywk_A Putative RNA-binding pr 31.8 70 0.0024 24.1 5.2 47 266-316 31-77 (95)
48 2do0_A HnRNP M, heterogeneous 30.4 93 0.0032 24.4 5.8 47 266-316 30-76 (114)
49 1jmt_A Splicing factor U2AF 35 29.6 87 0.003 24.8 5.5 40 277-316 49-88 (104)
50 1rlk_A Hypothetical protein TA 27.9 69 0.0024 26.4 4.6 39 112-150 47-86 (117)
51 2d9p_A Polyadenylate-binding p 26.4 1.2E+02 0.0041 23.2 5.8 46 266-316 30-75 (103)
52 2pe8_A Splicing factor 45; RRM 26.4 99 0.0034 24.5 5.3 62 267-332 29-93 (105)
53 3llb_A Uncharacterized protein 24.6 77 0.0026 24.1 4.1 41 180-227 8-48 (83)
54 2cqc_A Arginine/serine-rich sp 24.6 1.4E+02 0.0049 22.2 5.8 46 267-316 31-77 (95)
55 1x5o_A RNA binding motif, sing 24.5 1.4E+02 0.0049 23.3 6.0 47 266-316 40-86 (114)
56 2zv3_A PTH, peptidyl-tRNA hydr 24.5 71 0.0024 26.3 4.1 32 112-143 45-76 (115)
57 3lae_A UPF0053 protein HI0107; 23.5 89 0.003 23.7 4.2 41 180-227 8-48 (81)
58 2r2z_A Hemolysin; APC85144, en 22.5 75 0.0026 24.7 3.7 41 180-227 15-55 (93)
59 2pli_A Uncharacterized protein 21.9 1E+02 0.0035 23.9 4.4 41 180-227 17-57 (91)
60 3md1_A Nuclear and cytoplasmic 21.7 1.6E+02 0.0056 21.2 5.5 47 266-316 16-63 (83)
61 2dhg_A TRNA selenocysteine ass 21.4 1.2E+02 0.004 23.3 4.7 48 266-316 24-71 (104)
62 2cq3_A RNA-binding protein 9; 21.4 1.4E+02 0.0048 22.8 5.2 46 266-316 30-75 (103)
63 3md3_A Nuclear and cytoplasmic 21.0 1.4E+02 0.0049 24.4 5.6 46 267-316 16-61 (166)
64 3bs9_A Nucleolysin TIA-1 isofo 20.9 1.9E+02 0.0063 21.1 5.7 47 266-316 21-68 (87)
65 1p27_B RNA-binding protein 8A; 20.7 1.6E+02 0.0055 22.5 5.5 47 266-316 38-85 (106)
66 2dnz_A Probable RNA-binding pr 20.7 1.7E+02 0.0059 21.8 5.6 47 266-316 20-67 (95)
67 1s79_A Lupus LA protein; RRM, 20.5 1.3E+02 0.0044 23.7 4.8 45 266-314 26-70 (103)
68 1q7s_A BIT1, protein CGI-147; 20.4 1.1E+02 0.0039 25.1 4.5 31 113-143 48-78 (117)
69 3ue2_A Poly(U)-binding-splicin 20.4 1.2E+02 0.004 24.8 4.6 56 277-332 47-108 (118)
70 2j76_E EIF-4B, EIF4B, eukaryot 20.3 1.2E+02 0.004 23.4 4.5 48 263-316 31-80 (100)
71 2cpi_A CCR4-NOT transcription 20.1 1.6E+02 0.0056 23.0 5.4 40 277-316 40-83 (111)
No 1
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=100.00 E-value=5.1e-68 Score=562.13 Aligned_cols=379 Identities=37% Similarity=0.594 Sum_probs=351.5
Q ss_pred CCCHHHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCc
Q 012299 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS 156 (466)
Q Consensus 77 ~~~~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~ 156 (466)
.++++++++|++++|+++|++++..+..|++||+..+.+.|.+|++|+|++||+++|++|+++++|++|+|||||+.|++
T Consensus 12 ~~~~~~~~~L~~~lg~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~eeV~~~v~~a~~~~~pv~~~GgGt~~~g~~ 91 (476)
T 3pm9_A 12 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQ 91 (476)
T ss_dssp CCCHHHHHHHHHHHCGGGEECSHHHHHHHHBCTTCCCBCCCSCEECCCSHHHHHHHHHHHHHHTCCEEEESSSCCSSSTT
T ss_pred cCCHHHHHHHHHhcCCCcEecCHHHHHHHhcccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCc
Confidence 47788999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccc
Q 012299 157 VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSL 236 (466)
Q Consensus 157 ~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~ 236 (466)
+|..++|+|||++||+|+++|+++.+++||||+++.+|+++|.++|+.||++|++...|||||++++|+||.++.+||.+
T Consensus 92 ~~~~ggvvIdl~~m~~i~~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~~~~~~~s~~~~tvGG~ia~nagG~~~~~yG~~ 171 (476)
T 3pm9_A 92 TPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLA 171 (476)
T ss_dssp CCCSSCEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTTTTCBHHHHHHHTCCCTTHHHHCCH
T ss_pred cCCCCcEEEEeeCCCceEEEcCCCCeEEECCCcCHHHHHHHHHHhCCccCCCCCCCCcEEEccccCCCCCCCcccccCcH
Confidence 98777999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 237 ~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
+|+|+++|+|++||++++++....|++.||||+++++||+|+|||||+++||++|.|+...+.++.|++++++.+++.++
T Consensus 172 ~d~V~~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 172 RDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp HHHEEEEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHheeEEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999999999999888999999999999999999
Q ss_pred HHhcCCcceeEEecchhhHHHHHHHhcCCCCCCCCCccceeEEEEecCCchhhHHHHHHHHHHHHhhCCCccceEEecCH
Q 012299 317 KRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDI 396 (466)
Q Consensus 317 ~~~~~~~~~a~E~~D~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~ 396 (466)
++..+..|+++|+||+.++++++++ ++...|+++. .++++++|++|++ +..++.++++++.+.+.+...+..+++++
T Consensus 252 ~~~~g~~p~a~El~d~~~~~~~~~~-~~~~~~~~~~-~~~~llve~~g~~-~~~~~~~~~~~~~~~~~g~~~~~~~a~~~ 328 (476)
T 3pm9_A 252 QGEAAGNLTSFELIAETPLDFSVRH-ANNRDPLEAR-YPWYVLIELSSPR-DDARAALESILERGFEDGIVVDAAIANSV 328 (476)
T ss_dssp HHHHGGGEEEEEEEEHHHHHHHHHH-TTCCCCSSSC-CSEEEEEEEEESS-SCHHHHHHHHHHHHHHTTCCCEEEECCSH
T ss_pred HHhcCCCceEEEecCHHHHHHHHhc-cCCCCCCCcc-CCeEEEEEEccCc-HHHHHHHHHHHHHHHhcCCCcceEEeCCH
Confidence 8666788999999999999999887 4666666543 4689999999987 44566778888887777766788899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEEEEccchHHHHHHHHHHHHhhc--CCcEeeEEeecCC
Q 012299 397 NQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQRLGKA--AYNFIDYEILFPV 458 (466)
Q Consensus 397 ~~~~~lW~~R~~~~~~~~~~g~~~~~Dv~VP~~~l~e~~~~~~~~~~~~--g~~~~~~GH~~~~ 458 (466)
++.+++|++|+.+.++....|..+.+|++||+++|++++++++++++++ |+++++|||++|-
T Consensus 329 ~~~~~lW~~R~~~~~~~~~~g~~~~~Dv~vP~~~l~~~~~~~~~~~~~~~~~~~~~~~gH~gdG 392 (476)
T 3pm9_A 329 QQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDG 392 (476)
T ss_dssp HHHHHHHHHHHTHHHHTGGGCCEECCEEECCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEGGGT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCceeEEEEeeHHHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCC
Confidence 9999999999999998888777889999999999999999999999999 9999999999863
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=100.00 E-value=1.8e-55 Score=483.13 Aligned_cols=373 Identities=18% Similarity=0.237 Sum_probs=294.8
Q ss_pred CCCHHHHHHHHHhhCCCceeeChhHHHhhhcc---------cccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcC
Q 012299 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANED---------WMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQG 147 (466)
Q Consensus 77 ~~~~~~l~~L~~ilg~~~v~~~~~~~~~y~~d---------~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~G 147 (466)
.++++++++|+++++. +.++.+++..|+++ |...|+..|++||+|+|+|||+++|++|+++++||+|+|
T Consensus 159 ~~~~~~~~~l~~~~~~--~~~~~~~r~~h~~g~s~~d~~~~~~g~~~~~P~aVV~P~s~eeV~~iv~~A~~~~ipVvprG 236 (658)
T 4bby_A 159 IVNEDFLHELKKTNIS--YSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIG 236 (658)
T ss_dssp CCCHHHHHHHHHHTCE--EECCHHHHHHTSCCSCHHHHHHHHSSCCSCCCSEEEECCSHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCHHHHHHHHHhccc--ccCchHHHhhhcCCCCHHHHHHHhCCcccCCcCEEEeeCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 4678899999999875 45666666666554 345678889999999999999999999999999999999
Q ss_pred CCCCCCCCcccC----CCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCC
Q 012299 148 GNTGLVGGSVPV----FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVST 223 (466)
Q Consensus 148 gGt~l~g~~~p~----~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~ 223 (466)
||||+.|++.|. .++|+|||++||+|+++|+++++++|||||++.+|+++|.++|++||++|++.+.|||||+|++
T Consensus 237 gGTsl~GG~~~~~~~~~ggVvLDlsrMnrIleiD~~~~~atVeaGv~~~~L~~~L~~~Gl~lp~dP~S~~~aTIGG~iAt 316 (658)
T 4bby_A 237 GGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWIST 316 (658)
T ss_dssp SCCCSSSTTCCCTTCCSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHHTEECCCCCTTTTTCBHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCCcEEEEECccCCCcEEEcCCCCEEEEecCchHHHHHHHHHHcCCccCCCCCCccccEEeehhhc
Confidence 999999988763 3469999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccccccccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEc
Q 012299 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLAC 303 (466)
Q Consensus 224 na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~ 303 (466)
|++|.++.+||.++|+|+++|||+|||++++.+ ...|+++||||+++|+||||||||||+++|||+|+|+...+.++.|
T Consensus 317 na~G~~s~rYG~~~d~VlgleVVlpdG~i~~~~-~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f 395 (658)
T 4bby_A 317 RASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSC-QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAF 395 (658)
T ss_dssp TCCCTTHHHHCCHHHHEEEEEEEETTEEEECSC-CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEE
T ss_pred CCCCCCccCcCCHHHheeeEEEEeCCCcccccc-cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCcccccccccc
Confidence 999999999999999999999999999988755 4568899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeEEecchhhHHHHHHHhcCCCCCCC---CC--------------ccceeEEEEecCCc
Q 012299 304 KDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFS---SS--------------MHNFYVLIETTGSE 366 (466)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~a~E~~D~~~~~~~~~~~~~~~~~l~---~~--------------~~~~~llie~~g~~ 366 (466)
+|++++.+++.++.+. +..|+++|+||+..+++.....+.....+. +. .....+++.+++..
T Consensus 396 ~d~~~a~~av~~i~~~-~~~psa~El~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~eg~~ 474 (658)
T 4bby_A 396 PNFEQGVACLREIAKQ-RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDR 474 (658)
T ss_dssp SSHHHHHHHHHHHHHT-TCCCSEEEEECHHHHHHHHHTSSCCCCTTCC--------------CCCTTTCEEEEEEEEECH
T ss_pred CCchhhhhhHHHHHHc-CCCccccccccHHHHHHHHhhcccccccccccccchhhhhhhhhccCChHHHHHHHHHhcccH
Confidence 9999999999988763 677999999999998887665433221111 00 01123334444433
Q ss_pred hhhHHHHHHHHHHHHhhCCCccceEEecCHHHHHHHHHHHHHHHH--HHH-hcC-CceEEEEEEccchHHHHHHHHHHHH
Q 012299 367 ESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAE--ALM-KAG-AVYKYDLSLPVEKMYDLVEKMRQRL 442 (466)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lW~~R~~~~~--~~~-~~g-~~~~~Dv~VP~~~l~e~~~~~~~~~ 442 (466)
+. ..+..+.+.+.....+ .+...++..+.+|.+|..... .+. ..+ ....+|++||+++++++++.+++.+
T Consensus 475 ~~-v~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~~l 548 (658)
T 4bby_A 475 EK-VLQHEKQVYDIAAKFG-----GLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERI 548 (658)
T ss_dssp HH-HHHHHHHHHHHHHTTT-----CEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHhhC-----cchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHHHH
Confidence 22 2333333433333332 233455556666666654432 111 122 2356899999999999999988887
Q ss_pred hhc----C-----CcEeeEEeecCCC
Q 012299 443 GKA----A-----YNFIDYEILFPVQ 459 (466)
Q Consensus 443 ~~~----g-----~~~~~~GH~~~~~ 459 (466)
.+. + +....|||++|-.
T Consensus 549 ~~~~~~~g~~~~~~~~~~~~h~~dg~ 574 (658)
T 4bby_A 549 RRECKEKGVQFPPLSTCRVTQTYDAG 574 (658)
T ss_dssp HHHHHHTTCSSCCEEEEEEEEECSSE
T ss_pred HHHHHhcCccccccceEEEEEEeccC
Confidence 765 2 3456789987754
No 3
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=100.00 E-value=4.9e-55 Score=472.79 Aligned_cols=372 Identities=16% Similarity=0.229 Sum_probs=306.7
Q ss_pred CCCHHHHHHHHHhh-CCCceeeChhHHHhhhcc-----ccc----ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEc
Q 012299 77 TLNSEDVSYFKELL-GEKSVIQDEDVLLAANED-----WMR----KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQ 146 (466)
Q Consensus 77 ~~~~~~l~~L~~il-g~~~v~~~~~~~~~y~~d-----~~~----~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~ 146 (466)
.++++++++|++++ | ++|.+++..+..|++| |+. .+...|.+|++|+|++||+++|++|+++++||+|+
T Consensus 89 ~~~~~~~~~L~~~l~g-~~v~~~~~~~~~y~~d~~~~~~~~~~~g~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~pv~~~ 167 (584)
T 2uuu_A 89 KQYPEFVRELKAFFLP-DQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPM 167 (584)
T ss_dssp CCCHHHHHHHHTTSCG-GGEECSHHHHHHTTCCSSHHHHHHHHTTCCCCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred cCCHHHHHHHHhhcCC-CeEEECHHHHHHhccCCchhhhhhhccCccCCCCCEEEeCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 46678999999999 8 8899999888888764 221 24568999999999999999999999999999999
Q ss_pred CCCCCCCCCcccC---CCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCC
Q 012299 147 GGNTGLVGGSVPV---FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVST 223 (466)
Q Consensus 147 GgGt~l~g~~~p~---~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~ 223 (466)
|||||+.|++.|. .++|+|||++||+|+++|+++.+++||||+++.+|+++|.++|+.+|++|++.+.+||||++++
T Consensus 168 GgGts~~gg~~~~~~~~g~vvidl~~mn~I~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~ 247 (584)
T 2uuu_A 168 GGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLAT 247 (584)
T ss_dssp SSCCCSSCTTSCCCCSSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTGGGCBHHHHHHH
T ss_pred eCCCCCCCCCcccCCCCCEEEEECCCCCccEEEcCCCCEEEECCCCcHHHHHHHHHHcCCeeCcCCCccCCeeEeeeccC
Confidence 9999999999885 4679999999999999999999999999999999999999999999999998888999999999
Q ss_pred CccccCccccccccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEc
Q 012299 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLAC 303 (466)
Q Consensus 224 na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~ 303 (466)
|++|.++.+||.++|+|+++|||++||++++. ...+++.||||+++++||+|+|||||+++||++|.|+...+..+.|
T Consensus 248 na~G~~~~~yG~~~d~V~~levVl~dG~i~~~--~~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f 325 (584)
T 2uuu_A 248 CSSGHQSDKYGDIEDMAVSFRTVTPTGTLELR--NGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLF 325 (584)
T ss_dssp TCCCTTHHHHCCHHHHEEEEEEEETTEEECCC---------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEE
T ss_pred CCCcccccCcCcHHHheeeEEEEeCCCCEEEC--CccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEc
Confidence 99999999999999999999999999997652 2346789999999999999999999999999999999888889999
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeEEecchhhHHHHHHHhcC--CC---------------CCCCCCccceeEEEEecCCc
Q 012299 304 KDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEG--VR---------------NPFSSSMHNFYVLIETTGSE 366 (466)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~a~E~~D~~~~~~~~~~~~~--~~---------------~~l~~~~~~~~llie~~g~~ 366 (466)
++++++.+++.++.+ .+..|+++|+||+..+.+...+.+. .. .+++.. ..+++++|++|+.
T Consensus 326 ~~~~~a~~~~~~~~~-~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~llve~~g~~ 403 (584)
T 2uuu_A 326 PTFAHAVSALQQIRS-SEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFK-NVCLSIIGFEGPK 403 (584)
T ss_dssp SSHHHHHHHHHHHHH-HTCCCSEEEEECHHHHHHHHHTCCSCCCTTCCHHHHHHHHHHHTTTSCTT-TCEEEEEEEEECH
T ss_pred CCHHHHHHHHHHHHh-cCCCceEEEEechhHHHHHhhccCcccccchhhhhhHHHhhhhccCCCCC-ccEEEEEEEecCh
Confidence 999999999998876 3677999999999877653322111 00 133322 4588999999975
Q ss_pred hhhHHHHHHHHHHHHhhCCCccceEEecCHHHHHHHHHHHHHHHHHHHhc----CC-ceEEEEEEccchHHHHHHHHHHH
Q 012299 367 ESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMKA----GA-VYKYDLSLPVEKMYDLVEKMRQR 441 (466)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lW~~R~~~~~~~~~~----g~-~~~~Dv~VP~~~l~e~~~~~~~~ 441 (466)
+ .+++.++++.+.+.+.+... +. ++.+++|+.|+...++++.. +. ...+|++||+++++++++++++.
T Consensus 404 ~-~v~~~~~~~~~~~~~~g~~~---~~---~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~~~ 476 (584)
T 2uuu_A 404 K-VVDFHRTSVFDILSKNAAFG---LG---SAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQT 476 (584)
T ss_dssp H-HHHHHHHHHHHHHHTTTCEE---EE---EESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHCCCcc---ch---HHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHHHH
Confidence 4 45566777777666655432 22 24567999999887776542 22 35689999999999999999888
Q ss_pred ----HhhcCCcEeeEEeecCCCC
Q 012299 442 ----LGKAAYNFIDYEILFPVQQ 460 (466)
Q Consensus 442 ----~~~~g~~~~~~GH~~~~~~ 460 (466)
++++|+++++|||++-+++
T Consensus 477 l~~~~~~~g~~~~~~~h~gH~gd 499 (584)
T 2uuu_A 477 FVKHFKDQGIPAWICAHISHTYT 499 (584)
T ss_dssp HHHHHHTTTCCEEEEEEEEEEET
T ss_pred HHhHHHhcCCeeEEEEEEEeecC
Confidence 7888999999888875443
No 4
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=100.00 E-value=3.8e-56 Score=479.16 Aligned_cols=368 Identities=18% Similarity=0.232 Sum_probs=308.3
Q ss_pred HHHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccC
Q 012299 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (466)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~ 159 (466)
.+++++|++++|+++|.+++..+..|++||+ .+.+.|.+|++|+|++||+++|++|+++++||+|+|||||+.|++.|.
T Consensus 10 ~~~~~~L~~~~g~~~v~~~~~~~~~y~~d~~-~~~~~p~~Vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~G~~~~~ 88 (571)
T 1f0x_A 10 KAFLNELARLVGSSHLLTDPAKTARYRKGFR-SGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPN 88 (571)
T ss_dssp HHHHHHHHHHHCGGGEECCHHHHHHHHBCSS-SCBBCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCSSSTTSCC
T ss_pred HHHHHHHHHhcCCCeEEcCHHHHHHHhcccc-ccCCCccEEEeeCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCccCC
Confidence 4578999999998899999989999999997 688999999999999999999999999999999999999999999986
Q ss_pred CC-----eEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCC-CCceecCCcCCCccccCcccc
Q 012299 160 FD-----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK-GSCQIGGNVSTNAGGLRLVRY 233 (466)
Q Consensus 160 ~~-----gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~-~~~tvGG~ia~na~G~~~~~y 233 (466)
.+ +|+|||++||+|+++|+ +++++||||+++.+|+++|.++|+.+|++|++. ..+||||+|++|+||.++.+|
T Consensus 89 ~~~~~r~gvvIdl~rmn~I~~id~-~~~v~v~aGv~l~~L~~~l~~~Gl~~p~~~g~s~~~~tvGG~ia~nagG~~~~~y 167 (571)
T 1f0x_A 89 GNDYDRDVVIISTLRLDKLHVLGK-GEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRG 167 (571)
T ss_dssp BSCCSSCEEEEECTTCCCEEEETT-TTEEEECTTCBHHHHHHHHGGGTEECSCCCGGGGGTCBHHHHHHTTCCCSCTTSC
T ss_pred CcCCcCceEEEECcccCCceeECC-CCeEEEcCCcCHHHHHHHHHhcCccCCcCCCccCCCceecccccCCCCcccccCC
Confidence 53 89999999999999995 578999999999999999999999998888764 356999999999999999999
Q ss_pred ccccc----------------cEEEEEEEecCCceEeccCCcc------------cCCCCC-----------------ch
Q 012299 234 GSLHG----------------NVLGLEAVLANGDVIDMLGTLR------------KDNTGY-----------------DL 268 (466)
Q Consensus 234 G~~~d----------------~V~~levVl~dG~i~~~~~~~~------------k~~~G~-----------------dL 268 (466)
|.++| +|+++|+|++||++++++.... |+++|| ||
T Consensus 168 G~~~d~~~~~~~~~~~~l~~~~vl~levVl~dG~i~~~~~~~~~~~~~~~~~~~~k~~~Gy~~~~~~~d~~~p~~~~~Dl 247 (571)
T 1f0x_A 168 PAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTPARYNADP 247 (571)
T ss_dssp SSCCSCEEEEEECTTSCEEEEECSSBCCCSSHHHHHHHHHTTCCCGGGBCCCSCCSSCTTHHHHHHCTTCSSCSCCTTCG
T ss_pred CchhhhhhhheeccCCceEEEEeeeEEEEcCCCcEEEecCccccccchhhhcccccccCCcccccccccccccccccccH
Confidence 99999 9999999999999998775432 688999 99
Q ss_pred hhhh--hcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHHHhcCCcceeEEecchhhHHHHHHH-----
Q 012299 269 KHLF--IGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTY----- 341 (466)
Q Consensus 269 ~~l~--~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~D~~~~~~~~~~----- 341 (466)
+++| +||+|+||| |+++||++|.|+...++++.|++++++.+++..+++..+..|.++|+||+..++++.++
T Consensus 248 ~~l~~a~GseGtlGV-t~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~ 326 (571)
T 1f0x_A 248 DRLFESSGCAGKLAV-FAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTF 326 (571)
T ss_dssp GGCCSSTTCTTSSEE-EEEEEECEECCSSCEEEEEEESCHHHHHHHHHHHHHHCSSCCSEEEEEEHHHHHHHC-------
T ss_pred HHHHHhcCCCCceeE-EEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHhccccc
Confidence 9999 999999999 99999999999988888999999999999999987556778999999999999887655
Q ss_pred -----hcCCCC-----------------CC-C--------------------------CCccceeEEEEecCCchhhHHH
Q 012299 342 -----LEGVRN-----------------PF-S--------------------------SSMHNFYVLIETTGSEESYDRE 372 (466)
Q Consensus 342 -----~~~~~~-----------------~l-~--------------------------~~~~~~~llie~~g~~~~~~~~ 372 (466)
.+.... |+ + ....++++++|+.|.+++...+
T Consensus 327 ~~i~~~~~~~~p~~~~~k~~~~~~~~~~p~l~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~llve~~g~~~~~~~~ 406 (571)
T 1f0x_A 327 LMIDKLGTDKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHLLLKMAGDGVGEAKS 406 (571)
T ss_dssp --------------------------------------------------CCHHHHHHHHHCSEEEEEEECTTHHHHHHH
T ss_pred ccccccCcccccchhcccchhhhhhcccccccccchhhhhhhhhhccccccchhhhcccccCceEEEEEEecCcHHHHHH
Confidence 211111 11 0 0014589999999988766666
Q ss_pred HHHHHHHHHhhCCCccceEEecCHHHHHHHHHHHHHHHHHHHh--------cCCceEEEEEEccchHHHHHHHHHHHHhh
Q 012299 373 KLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMK--------AGAVYKYDLSLPVEKMYDLVEKMRQRLGK 444 (466)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lW~~R~~~~~~~~~--------~g~~~~~Dv~VP~~~l~e~~~~~~~~~~~ 444 (466)
.++++++.. .+ ..+..++++.+..|..|+....++.. .+..+.+|++||+++++++ +++++.+++
T Consensus 407 ~l~~~~~~~--~g----~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g~~~~~Dvavp~~~l~~~-~~~~~~l~~ 479 (571)
T 1f0x_A 407 WLVDYFKQA--EG----DFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRNDTEWY-EHLPPEIDS 479 (571)
T ss_dssp HHHHHHHHS--SC----EEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEEEEEEEEEECCTTCSCCS-CCCCHHHHT
T ss_pred HHHHHHHHc--CC----CeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcCCceEEEEEecHHHhHHH-HHHHHHHHh
Confidence 666665543 12 12223566777778878766543321 1234789999999999999 999999999
Q ss_pred cCCcEeeEEeecC
Q 012299 445 AAYNFIDYEILFP 457 (466)
Q Consensus 445 ~g~~~~~~GH~~~ 457 (466)
+++...+|||+++
T Consensus 480 ~~~~~~~~GH~g~ 492 (571)
T 1f0x_A 480 QLVHKLYYGHFMC 492 (571)
T ss_dssp TEEEEEEEEETTT
T ss_pred hCccceeEEEEcC
Confidence 9999999999986
No 5
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=100.00 E-value=1.1e-52 Score=453.56 Aligned_cols=368 Identities=18% Similarity=0.176 Sum_probs=294.6
Q ss_pred HHHHHHHHhhCCCceeeChhHHHh----hhcc------ccc--ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCC
Q 012299 81 EDVSYFKELLGEKSVIQDEDVLLA----ANED------WMR--KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGG 148 (466)
Q Consensus 81 ~~l~~L~~ilg~~~v~~~~~~~~~----y~~d------~~~--~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~Gg 148 (466)
+++++|++++|+++|.+++..+.. |++| |+. .+++.|.+|++|+|++||+++|++|+++++||+|+|+
T Consensus 23 ~~~~~L~~~~g~~~v~~d~~~~~~~~~~y~~d~~~~d~~~~~~~~~~~p~~Vv~P~s~~eV~~iv~~a~~~~~pv~~~g~ 102 (560)
T 1e8g_A 23 EFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISI 102 (560)
T ss_dssp HHHHHHHHHHCGGGEEECC-----CCBCSSSBCSSSCSSCCSCTTSSCCSEEECCSSHHHHHHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHHHhhCcccEecCHHHhhhhhhhhccccccccccccccccccCCcEEEeCCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 468899999999999999999988 8877 554 4788999999999999999999999999999999999
Q ss_pred CCCCC-CCccc-CCCeEEEEc-CCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCC--cccCCCCCCCceecCCcCC
Q 012299 149 NTGLV-GGSVP-VFDEVIINM-GSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI--MPLDLGAKGSCQIGGNVST 223 (466)
Q Consensus 149 Gt~l~-g~~~p-~~~gVvIdl-~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~--lp~~pgs~~~~tvGG~ia~ 223 (466)
|||+. |++.| ..+||+||| ++||+|+++|+++.+++||||+++.+|+++|.++|++ +|++|++.+.+||||++++
T Consensus 103 Gt~~~~gg~~p~~~~gvvidl~~~mn~il~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~tigG~~~~ 182 (560)
T 1e8g_A 103 GRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE 182 (560)
T ss_dssp CCCTTTTTTCCSSTTCEEEECTTTCCCEEEEETTTTEEEECTTCBHHHHHHHHHHTTCTTTEECCCCSSTTSBHHHHHHT
T ss_pred CCcCCcCCCCCCcCCEEEEEchHhcCCeEEEcCCCCEEEEeCCCCHHHHHHHHHHcCCccccCCCCCCCCccchhhhccC
Confidence 99997 88777 568999999 9999999999999999999999999999999999999 9989888888999999999
Q ss_pred CccccCccccccccccEEEEEEEecCCceEeccCCcccC-------------------------CCCCchhhhhhcCCCC
Q 012299 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD-------------------------NTGYDLKHLFIGSEGS 278 (466)
Q Consensus 224 na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~-------------------------~~G~dL~~l~~Gs~Gt 278 (466)
|++|.+ +||.++|+|+++|||++||++++++....++ ..||||.++|. +||
T Consensus 183 ~g~g~~--~yG~~~d~v~~l~vVl~dG~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~Gy~l~~L~~--~Gt 258 (560)
T 1e8g_A 183 RGVGYT--PYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFS--QSN 258 (560)
T ss_dssp TCBCSS--TTCBTGGGEEEEEEEETTSCEEECGGGGSCCCCCGGGTTCCGGGSCCCTTTTTCSCCSSCCCGGGGS--SSS
T ss_pred CCCCcc--cceeHHHheeeeEEEeCCCCEEEecCcccCcccccccccchhhhhhhhcccccccccCCcchhcccc--cCc
Confidence 999865 8999999999999999999999988654444 45899999986 589
Q ss_pred ceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHHHh--cCCcceeEEecchhhHHHHH-----HHhcCCCCCCCC
Q 012299 279 LGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRK--LGEILSAFEFLDNQSMDLVL-----TYLEGVRNPFSS 351 (466)
Q Consensus 279 lGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~E~~D~~~~~~~~-----~~~~~~~~~l~~ 351 (466)
|||||+++||++|.|+...+.++.|++++++.+++..+++. .+..|+++|+||... +++. .+. ....++++
T Consensus 259 lGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~p~~~el~d~~~-~~~~l~~~~~~~-~~~~~~p~ 336 (560)
T 1e8g_A 259 MGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILL-DAAVLGDKRSYS-SRTEPLSD 336 (560)
T ss_dssp SEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHHHHHHHHHTTSSCSCCEEEEHHH-HHHHHCCGGGTC-CCSSCCCH
T ss_pred EEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHHHHHHHHHcCCCcceeEEechHH-Hhhhhhhhhhhc-cCCCCCCH
Confidence 99999999999999999888999999999987776654432 356789999999874 3321 111 10012231
Q ss_pred C----------ccceeEEEEecCCchhhHHHHHHHHHHHHhhCCCccceEEecCHHHHHHHHHHHHHHH---HHHHhc--
Q 012299 352 S----------MHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIA---EALMKA-- 416 (466)
Q Consensus 352 ~----------~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lW~~R~~~~---~~~~~~-- 416 (466)
. ...+++++|++|+. +.+++.++.+.+.+.+.+. .+..++.++++.+.+|. |+.+. +++...
T Consensus 337 ~~~~~l~~~~~~~~~~l~~e~~g~~-~~v~~~~~~i~~i~~~~~~-~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~ 413 (560)
T 1e8g_A 337 EELDKIAKQLNLGRWNFYGALYGPE-PIRRVLWETIKDAFSAIPG-VKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKW 413 (560)
T ss_dssp HHHHHHHHHHTCCSEEEEEEEESCH-HHHHHHHHHHHHHHTTSTT-CEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGG
T ss_pred HHHHHHHhhcCCCceEEEEEEeCCH-HHHHHHHHHHHHHHHhCCC-ceeeccccchhhhhHHH-HHhhcccCchhhhhcc
Confidence 1 02468999999964 4455555555555544442 34445556656667886 88765 333322
Q ss_pred ------CCceEEEEEEcc--chHHHHHHHHHHHHhhcCCcEeeEEeecC
Q 012299 417 ------GAVYKYDLSLPV--EKMYDLVEKMRQRLGKAAYNFIDYEILFP 457 (466)
Q Consensus 417 ------g~~~~~Dv~VP~--~~l~e~~~~~~~~~~~~g~~~~~~GH~~~ 457 (466)
+..+.+|++||+ ++++++++.++++++++|+++++|||++|
T Consensus 414 ~~~~~~~~~~~~d~~vP~~~~~l~~~~~~~~~~~~~~g~~~~~~gH~gd 462 (560)
T 1e8g_A 414 IDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGM 462 (560)
T ss_dssp GGGSTTEEEEEECBEECSSHHHHHHHHHHHHHHHHHHTCCCCEEEEECS
T ss_pred ccccCCCceEEEeeecCCCHHHHHHHHHHHHHHHHHcCCceEEEEEecC
Confidence 234668999999 99999999999999999999999999987
No 6
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=100.00 E-value=6.7e-51 Score=436.13 Aligned_cols=370 Identities=18% Similarity=0.207 Sum_probs=294.0
Q ss_pred HHHHHHHHhhCCCceeeChhHHHhhhcccccc--cCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCC-CCcc
Q 012299 81 EDVSYFKELLGEKSVIQDEDVLLAANEDWMRK--YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV-GGSV 157 (466)
Q Consensus 81 ~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~--~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~-g~~~ 157 (466)
.++++|++++|.+.|.+++..+..|.+||+.. +++.|.+|++|+|++||+++|++|+++++||+|+|+|||+. |++.
T Consensus 19 ~~~~~L~~~l~~~~v~~~~~~~~~y~~d~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~pv~~~g~G~~~~~g~~~ 98 (520)
T 1wvf_A 19 KAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAA 98 (520)
T ss_dssp HHHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTTS
T ss_pred HHHHHHHHhcCCCeEecCcHHHHHHhcccccccccCCCCCEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCCC
Confidence 46889999999989999999999999998764 68899999999999999999999999999999999999997 7777
Q ss_pred c-CCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccC-CCCCCCceecCCcCCCccccCcccccc
Q 012299 158 P-VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLD-LGAKGSCQIGGNVSTNAGGLRLVRYGS 235 (466)
Q Consensus 158 p-~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~-pgs~~~~tvGG~ia~na~G~~~~~yG~ 235 (466)
| ..+||+|||++||+|+++|+++.+++||||+++.+|+++|.++|+.+|++ +.+.+.+||||++++|++|.. +||.
T Consensus 99 ~~~~~gvvidl~~m~~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~igG~~~~~g~g~~--~yG~ 176 (520)
T 1wvf_A 99 PVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYT--PYGE 176 (520)
T ss_dssp CSSTTCEEEECTTCCCEEEEETTTTEEEECTTCCHHHHHHHHHHTTCSEECCCCSSCTTCCHHHHHHTTCBCSS--TTCB
T ss_pred CCCCCeEEEECCCCCceEEECCCCCEEEECCCCCHHHHHHHHHHcCCcccCCCCCCCCeeeeeecccCCCcCCc--cccc
Confidence 6 46799999999999999999999999999999999999999999999887 334458999999999999875 8999
Q ss_pred ccccEEEEEEEecCCceEeccCCcccC---------CCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCH
Q 012299 236 LHGNVLGLEAVLANGDVIDMLGTLRKD---------NTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDY 306 (466)
Q Consensus 236 ~~d~V~~levVl~dG~i~~~~~~~~k~---------~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~ 306 (466)
++|+|+++|||++||++++++....++ ..||||.++|+|+ +|||||+++||++|.|+....+++.|+++
T Consensus 177 ~~d~v~~~evV~~dG~v~~~~~~~~~~~~l~~~~~~~~Gy~l~~l~~g~--~lGiVt~~~l~l~p~p~~~~~~~~~f~~~ 254 (520)
T 1wvf_A 177 HFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQA--NYGICTKMGFWLMPKPPVFKPFEVIFEDE 254 (520)
T ss_dssp GGGGEEEEEEECTTSCEEECGGGGSTTCSCTTTCSCCSSCCCHHHHTTS--SSCEEEEEEEECEECCSEEEEEEEEECCG
T ss_pred hhhcEeeeEEEcCCCcEEEeCCCcCCCchhHhhhcCCCCcchhhhccCC--ceEEEEEEEEEEEecCCeEEEEEEEeCCH
Confidence 999999999999999999986432222 4699999999764 99999999999999999888888999998
Q ss_pred HHHHHHH---HHHHHhcCCcceeEEecchhhHHHHHHHh--cC-C-CCCCCCC----------ccceeEEEEecCCchhh
Q 012299 307 FSCQKLL---REAKRKLGEILSAFEFLDNQSMDLVLTYL--EG-V-RNPFSSS----------MHNFYVLIETTGSEESY 369 (466)
Q Consensus 307 ~~~~~~~---~~~~~~~~~~~~a~E~~D~~~~~~~~~~~--~~-~-~~~l~~~----------~~~~~llie~~g~~~~~ 369 (466)
+++.+++ ..+++ .+..|+++|+||+..+..+.... +. . ...+++. ...+.+++|++|+. +.
T Consensus 255 ~~~~~~~~~~~~~~~-~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~ 332 (520)
T 1wvf_A 255 ADIVEIVDALRPLRM-SNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQ-EQ 332 (520)
T ss_dssp GGHHHHHHHHHHHHH-TTSSCSCEEEEEHHHHHHHTTCCGGGTCCCSSSCCHHHHHHHHHHHCCCSEEEEEEEEESH-HH
T ss_pred HHHHHHHHHHHHHHH-cCCCccceEeccHHHHHHHhcccchhhccCCCCCCHHHHHHHHHhcCCCceEEEEEEeCCH-HH
Confidence 8876644 44443 35678999999998765553200 00 0 0112210 02457888999965 34
Q ss_pred HHHHHHHHHHHHhhCCCccceEEecCHHHHHHHHHHHHHHH---HHHHh--------cCCceEEEEEEcc--chHHHHHH
Q 012299 370 DREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIA---EALMK--------AGAVYKYDLSLPV--EKMYDLVE 436 (466)
Q Consensus 370 ~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lW~~R~~~~---~~~~~--------~g~~~~~Dv~VP~--~~l~e~~~ 436 (466)
.++.++.+.+.+.+.+. .....+.++ +.+.+|++|+.+. ++... .+..+.+|++||+ ++++++++
T Consensus 333 v~~~~~~i~~~~~~~~~-~~~~~~~~~-~~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vp~~~~~l~~~~~ 410 (520)
T 1wvf_A 333 VDVNWKIVTDVFKKLGK-GRIVTQEEA-GDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAA 410 (520)
T ss_dssp HHHHHHHHHHHHHHHTC-CEEEEHHHH-TTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-eEEEecccc-hhhhHHHHHHHhhccCchhhhhccccccCCCceEEeccccCCCHHHHHHHHH
Confidence 45555555554444342 233333333 4568999998876 22222 1235678999999 99999999
Q ss_pred HHHHHHhhcCCcEeeEEeecCC
Q 012299 437 KMRQRLGKAAYNFIDYEILFPV 458 (466)
Q Consensus 437 ~~~~~~~~~g~~~~~~GH~~~~ 458 (466)
.++++++++|+.+++|||++|-
T Consensus 411 ~~~~~~~~~~~~~~~~gh~gdG 432 (520)
T 1wvf_A 411 MAKRVLHKYGLDYVAEFIVAPR 432 (520)
T ss_dssp HHHHHHHHTTCCCCEEEEECSS
T ss_pred HHHHHHHHcCCCeeEeecccCc
Confidence 9999999999999999998763
No 7
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=100.00 E-value=2.1e-49 Score=424.54 Aligned_cols=348 Identities=14% Similarity=0.168 Sum_probs=270.8
Q ss_pred CCHHHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHh-CCCeEEEcCCCCCCCCCc
Q 012299 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNS-RLLAVVPQGGNTGLVGGS 156 (466)
Q Consensus 78 ~~~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~-~~ipv~~~GgGt~l~g~~ 156 (466)
+.+.++++|+ + +++|.+++..+..|++||+..+.+.|.+|++|+|++||+++|++|++ +++||+|+|||||+.|++
T Consensus 26 ~~~~~~~~l~--~-~~~v~~d~~~~~~~~~d~~~~~~~~P~~vv~P~s~eeV~~iv~~a~~~~~~~v~~~GgGts~~g~~ 102 (524)
T 2exr_A 26 STDGVSESLN--I-QGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQA 102 (524)
T ss_dssp --------CC--C-SSEEECSHHHHHHHTCCTTCCCCCCCSEEEECSSHHHHHHHHHHHHHSSSCCEEEESSSCCSSSTT
T ss_pred cHHHHHHhcC--C-CCeEEeCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHHhhcCceEEEECCCcCCCCcc
Confidence 4445667777 4 67799999999999999988889999999999999999999999995 999999999999999998
Q ss_pred ccCCCeEEEEcCCCCCeEEEeC-----CC--CEEEEeCCCcHHHH-HHHHHhCCCCcccCCCCCCCceecCCcCCCcccc
Q 012299 157 VPVFDEVIINMGSMNNIITFDK-----GS--GVLVCEAGCILENL-VSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGL 228 (466)
Q Consensus 157 ~p~~~gVvIdl~~ln~I~~id~-----~~--~~v~veaGv~l~~L-~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~ 228 (466)
.+. +||+|||++||+| ++|+ ++ .+++||||+++.++ ++.++++|+. |++|++...|||||++++|++|.
T Consensus 103 ~~~-~gvvidl~~m~~i-~i~~~~~~~~~~~~~v~v~aGv~~~~l~~~~l~~~Gl~-~~~~~s~~~~tiGG~va~ng~G~ 179 (524)
T 2exr_A 103 MAE-GGLVVDMSTTAEN-HFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLA-PRSWTDYLGLTVGGTLSNAGVSG 179 (524)
T ss_dssp CCT-TSEEEEGGGGTTS-CEEEEECCSSSSSEEEEEETTCBHHHHHHHHHHHHSEE-CSCCCSCCSSBHHHHHTTCCCCT
T ss_pred cCC-CEEEEECcCCCCc-EEeecccCCCCCceEEEEeCCcCHHHHHHHHHHHcCCC-CCCCCcCCceeecccCCCCCCcc
Confidence 874 7899999999999 7877 55 79999999999997 5556699999 77888878899999999999999
Q ss_pred CccccccccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHH
Q 012299 229 RLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFS 308 (466)
Q Consensus 229 ~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~ 308 (466)
++.+||.++|+|+++|||++||++++++.. .||||+++++||+|+|||||+++||++|.|+...+..+.|+++++
T Consensus 180 ~~~~yG~~~d~V~~l~vV~~dG~v~~~~~~-----~~~dL~~~~~Gs~GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~ 254 (524)
T 2exr_A 180 QAFRYGPQTSNVTELDVVTGNGDVVTCSEI-----ENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDE 254 (524)
T ss_dssp THHHHCCGGGSEEEEEEEETTSCEEEEESS-----SSHHHHHHHTTCTTSSEEEEEEEEEEEECCSEEEEEEEEESCHHH
T ss_pred cccccCcHhhhEEEEEEEecCCeEEEECCC-----CChhHHhHhhcCCCccEEEEEEEEEEEEcCCeeEEEEEEeCCHHH
Confidence 999999999999999999999999998754 678999999999999999999999999999988888899999999
Q ss_pred HHHHHHHHHHhcCCcceeEEecchhhHHHHHH-------H-hcCC----CCCCCCCccceeEEEEe-----cCCchhhHH
Q 012299 309 CQKLLREAKRKLGEILSAFEFLDNQSMDLVLT-------Y-LEGV----RNPFSSSMHNFYVLIET-----TGSEESYDR 371 (466)
Q Consensus 309 ~~~~~~~~~~~~~~~~~a~E~~D~~~~~~~~~-------~-~~~~----~~~l~~~~~~~~llie~-----~g~~~~~~~ 371 (466)
+.+++..+.+. +.. +++|+||...+..... . +... ...++.....+++++|+ +|.+++.++
T Consensus 255 ~~~~~~~l~~~-~~~-~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~llve~~~~~~~g~~~~~v~ 332 (524)
T 2exr_A 255 FTQDAEWLVSQ-KNE-SSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTID 332 (524)
T ss_dssp HHHHHHHHHTS-CTT-SSCSEEEEEEEESSCCTTTSGGGSCSSTTSCCCGGGSCTTCCSEEEEEEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHc-CCc-chhHhhchhhhhcchhhhhhhhhcccccccccchhcCCcccccEEEEEEEEeecCCCCCHHHHH
Confidence 99998888653 333 6788888754432100 0 0000 01222111357899999 887777777
Q ss_pred HHHHHHHHHHhhCCCccceE-------EecCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEccchHHHHHHHHHHHHhh
Q 012299 372 EKLEAFLLSSMEGGLISDGV-------IAQDINQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQRLGK 444 (466)
Q Consensus 372 ~~l~~~~~~~~~~~~~~~~~-------~~~d~~~~~~lW~~R~~~~~~~~~~g~~~~~Dv~VP~~~l~e~~~~~~~~~~~ 444 (466)
++++++.+.+.+.+.. ... ++.+..+. .|+.|+...+++.. + ..|++||+++++++++++++....
T Consensus 333 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~--~W~~R~~~~~a~~~--~--~~Dv~VP~s~l~~~~~~v~~~~~g 405 (524)
T 2exr_A 333 KRVERLIGRLRFNEGL-RFEVDLPYVDFLLRVKRS--EEIAKENGTWETPH--P--WLNLFVSKRDIGDFNRTVFKELVK 405 (524)
T ss_dssp HHHHHHHTTCCCCTTC-EEEEEEEHHHHHTTTHHH--HHHHHHTTCSSSCC--C--CEEEEEEHHHHHHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHhCCCe-EeecccchhhhhhhhhhH--HHHhhhhcccccCC--C--eeEEEECHHHHHHHHHHHHHHHhC
Confidence 7777776655444322 111 23333332 39999977654432 2 259999999999999998764433
Q ss_pred c
Q 012299 445 A 445 (466)
Q Consensus 445 ~ 445 (466)
.
T Consensus 406 d 406 (524)
T 2exr_A 406 N 406 (524)
T ss_dssp T
T ss_pred C
Confidence 3
No 8
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=100.00 E-value=5.1e-47 Score=407.26 Aligned_cols=353 Identities=13% Similarity=0.137 Sum_probs=271.3
Q ss_pred CCHHHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHh--C-CCeEEEcCCCCCCCC
Q 012299 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNS--R-LLAVVPQGGNTGLVG 154 (466)
Q Consensus 78 ~~~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~--~-~ipv~~~GgGt~l~g 154 (466)
.+..++++|+++..+..+.+++..+..|.+||+..+.+.|.+|++|+|++||+++|++|++ + ++|++++|||||+.|
T Consensus 30 ~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~~~v~~~G~G~~~~g 109 (534)
T 1w1o_A 30 RGRPWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMG 109 (534)
T ss_dssp ----------CTTTTTCEECSHHHHHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSS
T ss_pred chHHHHHHHHhcCCCceEecCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Confidence 3446678899966678899999999999999988889999999999999999999999997 6 999999999999999
Q ss_pred CcccCCCeEEEEcCCCCCe-----EEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccC
Q 012299 155 GSVPVFDEVIINMGSMNNI-----ITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR 229 (466)
Q Consensus 155 ~~~p~~~gVvIdl~~ln~I-----~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~ 229 (466)
++.+. +||+|||++||+| +++|+++.+++||||+++.+|++++.++|+. ++++++...+||||++++|++|..
T Consensus 110 ~~~~~-~gvvi~l~~m~~i~~~~~~~~d~~~~~v~v~aGv~~~~l~~~~~~~Gl~-~~~~~~~~~~tvGG~v~~~g~g~~ 187 (534)
T 1w1o_A 110 QAFAP-GGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVA-PRSWTDYLYLTVGGTLSNAGISGQ 187 (534)
T ss_dssp TTCCT-TSEEEEGGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTEE-ESCCCSSCCSBHHHHHTTCCCSTT
T ss_pred CcCCC-CeEEEECccccccccCccEEEcCCCCEEEECCCcCHHHHHHHHHHCCCc-ccCCCCCCCEEeceeccCCCcccc
Confidence 88873 7999999999998 7999888999999999999999999999996 667777778999999999999999
Q ss_pred ccccccccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHH
Q 012299 230 LVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSC 309 (466)
Q Consensus 230 ~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~ 309 (466)
+.+||.++|+|+++|||++||++++++.. .++||+|+++||+|+|||||+++||++|.|+...+..+.|++++++
T Consensus 188 ~~~yG~~~d~v~~~evV~~dG~v~~~~~~-----~~~dL~~~~rGs~G~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~ 262 (534)
T 1w1o_A 188 AFRHGPQISNVLEMDVITGHGEMVTCSKQ-----LNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAF 262 (534)
T ss_dssp HHHHCCGGGSEEEEEEEETTSCEEEEESS-----SSHHHHHHHTTCTTCSEEEEEEEEEEEECCSEEEEEEEEESCHHHH
T ss_pred ccccccHhhhEEEEEEEeCCccEEEECCC-----CChhhHhhhcCCCCCcEEEEEEEEEEEECCcceEEEEEEeCCHHHH
Confidence 99999999999999999999999998764 6789999999999999999999999999999888888889999998
Q ss_pred HHHHHHHHHhcCC-----cceeEEecchhhHHH---HHHHhcCC-CC---------CCCCC-ccceeEEEEec----CCc
Q 012299 310 QKLLREAKRKLGE-----ILSAFEFLDNQSMDL---VLTYLEGV-RN---------PFSSS-MHNFYVLIETT----GSE 366 (466)
Q Consensus 310 ~~~~~~~~~~~~~-----~~~a~E~~D~~~~~~---~~~~~~~~-~~---------~l~~~-~~~~~llie~~----g~~ 366 (466)
.+++..++.. +. .++++|+||...+.. +..+ +.. .. +++.. ..+.++++|+. |.+
T Consensus 263 ~~~~~~~~~~-~~~~~~~~~~~~e~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ie~~~~~~g~~ 340 (534)
T 1w1o_A 263 SADQERLTAP-RPGGGGASFGPMSYVEGSVFVNQSLATDL-ANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNAT 340 (534)
T ss_dssp HHHHHHHHCB-C------CBCSCSEEEEEEEEGGGHHHHH-HTTSSSCHHHHHHHHHHHHHTTCSEEEEEEEEEEC----
T ss_pred HHHHHHHHhc-ccccccccccchhHhhhhhhccccccccc-ccccccCccccccccccccccccceEEEEEEEEecCCCc
Confidence 8888777543 43 578999999877642 2222 232 11 11100 03468888886 655
Q ss_pred h--hhHHHHHHHHHHHHhhCCCccceE--E----ecCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEccchHHHHHHHH
Q 012299 367 E--SYDREKLEAFLLSSMEGGLISDGV--I----AQDINQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKM 438 (466)
Q Consensus 367 ~--~~~~~~l~~~~~~~~~~~~~~~~~--~----~~d~~~~~~lW~~R~~~~~~~~~~g~~~~~Dv~VP~~~l~e~~~~~ 438 (466)
+ +..++.++.+++.+.+.+.. ... . ..+. ..+.+|++|+....... ..+. |++||+++++++++++
T Consensus 341 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~y~~~~~~-~~~~~w~~r~~~~~~~~---~~~~-d~~vP~s~l~~~~~~~ 414 (534)
T 1w1o_A 341 AAAAAVDQELASVLGTLSYVEGF-AFQRDVAYAAFLDR-VHGEEVALNKLGLWRVP---HPWL-NMFVPRSRIADFDRGV 414 (534)
T ss_dssp ---CHHHHHHHHHHTTCCCCTTC-EEEEEEEHHHHHTH-HHHHHHHHHHTTCSSSC---CCCE-EEEEEGGGHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhcccCCc-ceeccchHHHHhhh-hhhhHHHHhhccccccC---Cccc-cEEecHHHHHhHHHHH
Confidence 4 44556666666555433321 111 0 0111 12356999986544322 1245 9999999999999999
Q ss_pred HHHHhhc
Q 012299 439 RQRLGKA 445 (466)
Q Consensus 439 ~~~~~~~ 445 (466)
.+.+.+.
T Consensus 415 ~~~l~~~ 421 (534)
T 1w1o_A 415 FKGILQG 421 (534)
T ss_dssp TTTTTTT
T ss_pred HHHHhhc
Confidence 8755444
No 9
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=100.00 E-value=3.7e-36 Score=320.50 Aligned_cols=231 Identities=16% Similarity=0.205 Sum_probs=195.0
Q ss_pred HHHHHHHHHhhCCCceeeChh-----HHHhhhcc--cccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCC
Q 012299 80 SEDVSYFKELLGEKSVIQDED-----VLLAANED--WMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGL 152 (466)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~-----~~~~y~~d--~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l 152 (466)
+++++.|.+.++++.|.+..+ .+..|.++ |+.....+|.+||+|+|++||+++|++|+++++||++|||||++
T Consensus 9 ~~f~~~L~~~~~~~~v~~~~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~p~~~~~v~~~v~~a~~~~~~~~~r~gGh~~ 88 (500)
T 3tsh_A 9 EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRSGGHDY 88 (500)
T ss_dssp CHHHHHHHHHSCGGGEEETTSTTHHHHHHTTCCCTTTTSTTSCCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCT
T ss_pred HHHHHHHHhhCCCCEEECCCCCccHHHHHhhhccccccCCCCCCceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcCC
Confidence 467889999998887776532 23334333 77667788999999999999999999999999999999999998
Q ss_pred CCCc---ccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccC
Q 012299 153 VGGS---VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR 229 (466)
Q Consensus 153 ~g~~---~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~ 229 (466)
.|.+ .+.+++++|||++||+| ++|+++++++||||+++.+|+++|.++|+.+.+.+|+.+++++||+++++++|..
T Consensus 89 ~g~s~~~~~~~~~~~idl~~~~~v-~~d~~~~~~~v~~G~~~~~~~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~g~~ 167 (500)
T 3tsh_A 89 EGLSYRSLQPETFAVVDLNKMRAV-WVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGML 167 (500)
T ss_dssp TCTTTCCSSSCCEEEEECTTCCCE-EEETTTTEEEEETTSBHHHHHHHHHHHCTTEECCCCSSTTSBHHHHHHTCCCCTT
T ss_pred CCCcCCCCCcCCeEEEECcCCCCE-EECCCCCEEEEccCcCHHHHHHHHHHhCCCcccCCCCCCCceecCccccccCCcc
Confidence 7643 34467999999999998 9999999999999999999999999999988877899999999999999999999
Q ss_pred ccccccccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhh-cCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHH
Q 012299 230 LVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFI-GSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFS 308 (466)
Q Consensus 230 ~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~-Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~ 308 (466)
+.+||.++|+|+++|||++||+++... ..+.||+|+++ |++|+|||||++++|++|.|+....+.+.+...+.
T Consensus 168 ~~~~G~~~d~v~~~~vV~a~G~i~~~~------~~~~dl~~a~~gg~gg~fGvvt~~~~~~~p~p~~~~~~~~~~~~~~~ 241 (500)
T 3tsh_A 168 LRKYGIAAENVIDVKLVDANGKLHDKK------SMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEG 241 (500)
T ss_dssp HHHHCCGGGGEEEEEEECTTSCEECHH------HHCHHHHHHHTTSCSSTTCEEEEEEEECEECCSCEEEEEEEEETTTT
T ss_pred ccccCChhhheeeEEEECCCceEEECC------CCChHHHHHHHhhcccceEEEEEEEEEEEeCCCeEEEEEEecCcHHH
Confidence 999999999999999999999987543 24569999998 55689999999999999999876655555554455
Q ss_pred HHHHHHHHH
Q 012299 309 CQKLLREAK 317 (466)
Q Consensus 309 ~~~~~~~~~ 317 (466)
+.+++...+
T Consensus 242 ~~~~~~~~~ 250 (500)
T 3tsh_A 242 AVDIINKWQ 250 (500)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 10
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=100.00 E-value=1.1e-34 Score=307.29 Aligned_cols=219 Identities=16% Similarity=0.235 Sum_probs=190.9
Q ss_pred hhcccccccCCCccEEEEcCCHHHHHHHHHHHHhC--CCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCE
Q 012299 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSR--LLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGV 182 (466)
Q Consensus 105 y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~--~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~ 182 (466)
+.++|. ++.+.|.+|++|+|++||+++|++|+++ ++|++++|+|||+.+.+.+ .+|++|||++||+|+++|+++++
T Consensus 32 ~~~~W~-~~~~~p~~vv~P~s~eev~~~v~~a~~~~~~~~v~~~G~G~s~~~~~~~-~~gvvIdl~~l~~i~~~d~~~~~ 109 (481)
T 4feh_A 32 RLTGWG-RTAPSVANVLRTPDAEMIVKAVARVAESGGGRGAIARGLGRSYGDNAQN-GGGLVIDMTPLNTIHSIDADTKL 109 (481)
T ss_dssp EECCTT-CCSCEEEEEEECSCHHHHHHHHHHHHTTTCTTCEEEECSSCSSSSTTCC-TTSEEEECTTCCCEEEEETTTTE
T ss_pred eeeccc-CCCCCCCEEEeCCCHHHHHHHHHHHHHcCCCceEEEEeCCcCCCCCCCC-cCeEEEECccCCCceEEcCCCCE
Confidence 456784 5789999999999999999999999999 7999999999999776654 57999999999999999999999
Q ss_pred EEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccC
Q 012299 183 LVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 262 (466)
Q Consensus 183 v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~ 262 (466)
|+||||+++.+|.++|.++|+.+|..|++. .+||||+|++|+||.++.+||.++|+|+++|+|++||++++++..
T Consensus 110 v~v~aGv~l~~L~~~l~~~Gl~l~~~~g~~-~~tvGGaia~~a~G~~~~~~G~~~d~V~~~evV~~dG~v~~~s~~---- 184 (481)
T 4feh_A 110 VDIDAGVNLDQLMKAALPFGLWVPVLPGTR-QVTVGGAIACDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPT---- 184 (481)
T ss_dssp EEEETTCBHHHHHHHHGGGTEECSCCCSCS-CCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEECTTSCEEEECSS----
T ss_pred EEEcCCccHHHHHHHHHHcCCEEEEeCCcC-ccccCCccccccCCCCcccCCCccceEeEEEEEeCCCCEEEeCCC----
Confidence 999999999999999999999999888875 579999999999999989999999999999999999999998753
Q ss_pred CCCCchhhhhhcCCCCceEEEEEEEEccCCCcc-eeEEEEEcCCHHHHHHHHHHHHHhcCCcceeEEecch
Q 012299 263 NTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSS-VNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDN 332 (466)
Q Consensus 263 ~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~D~ 332 (466)
..++||+++++|+.|++||||+++||+.|.|+. .....+.+.+++++.+.+.+... ......+-++|.
T Consensus 185 ~~~~dLf~a~rgs~G~~GIIt~~tl~l~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~w~d~ 253 (481)
T 4feh_A 185 GEDAELFWATVGGNGLTGIIMRATIEMTPTSTAYFIADGDVTASLDETIALHSDGSE--ARYTYSSAWFDA 253 (481)
T ss_dssp STTHHHHHHHTTCTTTTCEEEEEEEECEECSCSEEEEEEEECSSHHHHHHHHSSSGG--GGCSEEEEEECC
T ss_pred CCChHHHHHhhccCCCceEEEEEEEEEEeCCccEEEEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEEec
Confidence 257899999999999999999999999999864 44556788999998888764322 122345556663
No 11
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=100.00 E-value=1.6e-34 Score=305.74 Aligned_cols=220 Identities=18% Similarity=0.220 Sum_probs=188.9
Q ss_pred CCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcc-cCCCeEEEEcCC
Q 012299 91 GEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV-PVFDEVIINMGS 169 (466)
Q Consensus 91 g~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~-p~~~gVvIdl~~ 169 (466)
+...+..++..+......|+.++.+.|.+|++|+|++||+++|++|+++++|+.++|||||+.|.+. +..++|+|||++
T Consensus 11 ~~~v~~p~~~~y~~~~~~~n~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~vvIdl~~ 90 (473)
T 3rja_A 11 GVPIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDR 90 (473)
T ss_dssp TCCBCCTTSHHHHHHTCCSBTTSCCCCSEEEECCSHHHHHHHHHHHHHTTCCEEEESSCCCTTCGGGTSSSSCEEEECTT
T ss_pred CCcEECCCCCchHHHHHHhhcccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCcccCCCCeEEEECCC
Confidence 3344555666777778889888999999999999999999999999999999999999999986444 335689999999
Q ss_pred CCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCC-CCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEec
Q 012299 170 MNNIITFDKGSGVLVCEAGCILENLVSFLDDHG-FIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLA 248 (466)
Q Consensus 170 ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~G-l~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~ 248 (466)
||+|.++|+++++++||||+++.+|.++|.++| +.+|. |+.+.++|||.+++|++|..+.+||.++|+|+++|||++
T Consensus 91 ~~~i~~vd~~~~~v~v~aG~~~~~l~~~l~~~G~~~~p~--G~~~~vgvgG~~~ggg~G~~~~~~G~~~D~v~~~~vV~a 168 (473)
T 3rja_A 91 MIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISH--GTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLA 168 (473)
T ss_dssp CCCEEEEETTTTEEEECTTCBHHHHHHHHHHHHSEECCC--CSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECT
T ss_pred CCceEEEcCCCCEEEECCCCCHHHHHHHHHHcCCEEecc--CCCCCcEeeeeccCCCCCcccccccchHhheeeEEEEec
Confidence 999977999999999999999999999999999 76763 777788999999999999999999999999999999999
Q ss_pred CCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcC--CHHHHHHHHHHHH
Q 012299 249 NGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACK--DYFSCQKLLREAK 317 (466)
Q Consensus 249 dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~--~~~~~~~~~~~~~ 317 (466)
||++++++.. .++||+|+++|++|+|||||+++||++|.|+....+.+.++ +.+++.+++..++
T Consensus 169 ~G~v~~~~~~-----~~~dLf~a~rG~~g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (473)
T 3rja_A 169 DGRIVEASAT-----ENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVE 234 (473)
T ss_dssp TSCEEEEETT-----BSHHHHHHHHHHGGGTCEEEEEEEECEECCSCEEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCeEEEeCCC-----CCcchhhcccCCCCceEEEEEEEEEEEeCCCceEEEEEEecCccHHHHHHHHHHHH
Confidence 9999998754 57899999999999999999999999999986655554443 2444555554443
No 12
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=100.00 E-value=1.4e-36 Score=307.18 Aligned_cols=267 Identities=15% Similarity=0.225 Sum_probs=204.4
Q ss_pred CCCHHHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCc
Q 012299 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS 156 (466)
Q Consensus 77 ~~~~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~ 156 (466)
.++.+++++|++++|+++|.+ +..+..|++ ..+++.|++|++|+|++||++++++|+++++|++++|||||+.++.
T Consensus 13 ~~~~~~~~~l~~~l~~~~v~~-~~~l~~~~t---~~~~~~p~~vv~P~s~eev~~~l~~a~~~~~pv~~~GgGtnl~~~~ 88 (326)
T 1hsk_A 13 PINKDIYQALQQLIPNEKIKV-DEPLKRYTY---TKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIRE 88 (326)
T ss_dssp --CHHHHHHHHHHSCGGGEEE-EEEGGGTCT---TSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCSSEEECT
T ss_pred cchHHHHHHHHHhcCccceec-CcchHHhcc---CCcCCcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCccccCC
Confidence 367789999999999888888 667888874 3578899999999999999999999999999999999999998877
Q ss_pred ccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCC----CcccCCCCCCCceecCCcCCCccccCccc
Q 012299 157 VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF----IMPLDLGAKGSCQIGGNVSTNAGGLRLVR 232 (466)
Q Consensus 157 ~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl----~lp~~pgs~~~~tvGG~ia~na~G~~~~~ 232 (466)
.+. ++++|||++||+| ++|. .+++||||+++.+|++++.++|+ +++.+|+ ||||++++|+||
T Consensus 89 ~~~-~gvvI~l~~m~~i-~id~--~~v~v~aGv~~~~l~~~l~~~Gl~gLe~~~~~Pg-----tvGG~i~~nagg----- 154 (326)
T 1hsk_A 89 GGI-RGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG-----SIGGAVYMNAGA----- 154 (326)
T ss_dssp TCE-EEEEEECTTCCCE-EEET--TEEEEETTSBHHHHHHHHHHTTEESCGGGTTCCS-----BHHHHHHHTCEE-----
T ss_pred CCC-CeEEEEeCCCCce-EEcC--CEEEEeCCCcHHHHHHHHHHCCCccccccCCCcc-----hhhHHHhccccc-----
Confidence 654 6899999999999 8884 68999999999999999999999 6776665 699999999998
Q ss_pred cc-cccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCC-CcceeEEEEEcCCHHHHH
Q 012299 233 YG-SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK-LSSVNLAFLACKDYFSCQ 310 (466)
Q Consensus 233 yG-~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~-p~~~~~~~~~~~~~~~~~ 310 (466)
|| .++|+|+++++|++||++++++.. +...||++..++ ++| ||||+++||++|. |+... .+.
T Consensus 155 yG~~~~d~v~~v~vv~~~G~i~~~~~~--~~~~gyr~~~l~--s~g--gIIt~~~l~l~p~~p~~~~----------~~~ 218 (326)
T 1hsk_A 155 YGGEVKDCIDYALCVNEQGSLIKLTTK--ELELDYRNSIIQ--KEH--LVVLEAAFTLAPGKMTEIQ----------AKM 218 (326)
T ss_dssp TTEEHHHHEEEEEEECTTSCEEEEETT--TTTCBTTBCHHH--HTT--CEEEEEEEECEECCHHHHH----------HHH
T ss_pred CchhhhhhEEEEEEEeCCCCEEEEChH--HcCCCccccccC--CCC--EEEEEEEEEEEcCCHHHHH----------HHH
Confidence 99 899999999999999999998765 566888876654 566 9999999999998 54332 223
Q ss_pred HHHHHHHHhcC--------------CcceeEEecchhhHHHHHHHhcCCCCCCCCCccceeEEEEecCCchhhHHHHHHH
Q 012299 311 KLLREAKRKLG--------------EILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEA 376 (466)
Q Consensus 311 ~~~~~~~~~~~--------------~~~~a~E~~D~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~~~l~~ 376 (466)
..+...++... ..+.|+|+||...++.+.. .+. .+++ ..+++++++.|.+.+.+.+.++.
T Consensus 219 ~~~~~~~~a~~p~~~~s~gs~fk~p~~~~a~elid~~glkg~~~--g~a--~v~~--~~a~~lvn~~ga~~~~v~~~~~~ 292 (326)
T 1hsk_A 219 DDLTERRESKQPLEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRI--GGV--EVST--KHAGFMVNVDNGTATDYENLIHY 292 (326)
T ss_dssp HHHHHHHHHHSCTTSCEECCCBCCCTTSCHHHHHHHTTCTTCEE--TTE--EECS--SCTTCEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcEEEeeeCCCcchHHHHHHHhccCCEEe--CCe--eecc--cccEEEEECCCCCHHHHHHHHHH
Confidence 33333333211 1245566666544332210 011 1121 34678999998666655555565
Q ss_pred HHHHHhh
Q 012299 377 FLLSSME 383 (466)
Q Consensus 377 ~~~~~~~ 383 (466)
+.+.+.+
T Consensus 293 v~~~v~~ 299 (326)
T 1hsk_A 293 VQKTVKE 299 (326)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 13
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=100.00 E-value=3e-34 Score=302.76 Aligned_cols=211 Identities=19% Similarity=0.230 Sum_probs=183.6
Q ss_pred ChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEe
Q 012299 98 DEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFD 177 (466)
Q Consensus 98 ~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id 177 (466)
++..+......|+..+.+.|.+|++|+|++||+++|++|+++++|+.++||||++.|.+. ..+|++|||++||+| ++|
T Consensus 20 ~~~~y~~~~~~~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~~~~~-~~~gvvi~l~~l~~i-~~d 97 (459)
T 2bvf_A 20 DDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYAT-NDGGIVLDLRLMNSI-HID 97 (459)
T ss_dssp TSTTHHHHHCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTC-CSSSEEEECTTCCCE-EEE
T ss_pred CCccHHHHHHHhhhhccCCCCEEEecCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCccc-cCCeEEEECCCCCCE-EEC
Confidence 444455556778888889999999999999999999999999999999999999988764 357899999999999 899
Q ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccC
Q 012299 178 KGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLG 257 (466)
Q Consensus 178 ~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~ 257 (466)
+++.+++||||+++.+|.++|.++|+.+|. |....++|||++.++++|+.+.+||.++|+|+++|||++||++++++.
T Consensus 98 ~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~--g~~~~~gi~G~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~ 175 (459)
T 2bvf_A 98 TAGSRARIGGGVISGDLVKEAAKFGLAAVT--GMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSD 175 (459)
T ss_dssp TTTTEEEEETTCBHHHHHHHHHTTTEEECC--CSCTTSBHHHHHTTCCCCTTHHHHCCGGGGEEEEEEECTTSCEEEEES
T ss_pred CCCCEEEECCCCCHHHHHHHHHHcCCEecC--CCCCCcccceeecCCCCccccccccCHhHhEEEEEEEcCCCeEEEeCC
Confidence 999999999999999999999999999885 556678999999999999999999999999999999999999999875
Q ss_pred CcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCC--HH--HHHHHHHHHH
Q 012299 258 TLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKD--YF--SCQKLLREAK 317 (466)
Q Consensus 258 ~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~--~~--~~~~~~~~~~ 317 (466)
. .++||+|+++|++|+|||||+++||++|.|+......+.|+. .+ ++.+++.++.
T Consensus 176 ~-----~~~dLf~a~rg~~g~~GiVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (459)
T 2bvf_A 176 D-----ERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDAL 234 (459)
T ss_dssp S-----SSHHHHHHHHHHGGGTCEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred C-----CChhhHhHhhccCCccEEEEEEEEEEEECCCcEEEEEEEechHHhhHHHHHHHHHHHH
Confidence 4 568999999999999999999999999997665555555553 44 5555555543
No 14
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=100.00 E-value=1.8e-34 Score=301.42 Aligned_cols=211 Identities=17% Similarity=0.258 Sum_probs=187.1
Q ss_pred cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEe
Q 012299 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (466)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~ve 186 (466)
++|+..+.+.|.+|++|+|++||+++|++| +|++++||||++.+.+.+..+|++|||++||+|+++|+++++++||
T Consensus 11 ~~w~~~~~~~p~~v~~P~s~~ev~~~v~~a----~~v~~~G~G~s~~~~~~~~~~g~vi~l~~l~~i~~~d~~~~~v~v~ 86 (422)
T 2vfr_A 11 TNWAGNITYTAKELLRPHSLDALRALVADS----ARVRVLGSGHSFNEIAEPGDGGVLLSLAGLPSVVDVDTAARTVRVG 86 (422)
T ss_dssp BCSSSSCBCSCSSCBCCSSHHHHHHHHHHC----SSEEECSSCCCCSSTTCCCTTCEEECSTTSCCCEEEETTTTEEEEE
T ss_pred ecCCCCccCCCCEEEeCCCHHHHHHHHHhC----CCEEEEECCCCCCCCccCCCCcEEEEhhhCCCcEEEcCCCCEEEEc
Confidence 578888999999999999999999999999 8999999999999888865679999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccCCCCC
Q 012299 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (466)
Q Consensus 187 aGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G~ 266 (466)
||+++.+|+++|.++|+.+| ++++.+.+||||++++|++|.+ .+||.++|+|+++|+|++||++++++.. + +
T Consensus 87 aG~~l~~l~~~l~~~Gl~l~-~~~~~~~~tvGG~i~~~~~G~~-~~~G~~~d~v~~~~vv~~~G~~~~~~~~--~-~--- 158 (422)
T 2vfr_A 87 GGVRYAELARVVHARGLALP-NMASLPHISVAGSVATGTHGSG-VGNGSLASVVREVELVTADGSTVVIARG--D-E--- 158 (422)
T ss_dssp TTCBHHHHHHHHHHTTEECS-CCCSSSCSBHHHHHHHTCCCCC-TTCCCGGGGEEEEEEECTTSCEEEEETT--S-T---
T ss_pred CCCCHHHHHHHHHHcCCccc-CCCCCCCeeHHHHHhcCCCCCC-cccCcHHHheEEEEEEeCCCCEEEeCCC--C-C---
Confidence 99999999999999999987 6777778899999999999986 6999999999999999999999998764 1 2
Q ss_pred chhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHH-HHHHHHHHhcCCcceeEEecchhhHH
Q 012299 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQ-KLLREAKRKLGEILSAFEFLDNQSMD 336 (466)
Q Consensus 267 dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~E~~D~~~~~ 336 (466)
. +++++|++|++||||+++||+.|.|+.....++ +.+++++. +++.++. ..+.++|+++ ..++
T Consensus 159 ~-f~~~~g~~G~lGvit~~~l~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~e~~~-~~~~ 222 (422)
T 2vfr_A 159 R-FGGAVTSLGALGVVTSLTLDLEPAYEMEQHVFT-ELPLAGLDPATFETVM----AAAYSVSLFT-DWRA 222 (422)
T ss_dssp T-GGGTSSCTTTTCEEEEEEEECEECCEEEEEEEE-EECSTTCCHHHHHHHH----TSSSEEEEEE-CSSS
T ss_pred C-cceEEecCCCCEEEEEEEEEEEecCceEEEEEe-cCCHHHHHHHHHHHHH----hcCCcEEEEe-cCCC
Confidence 1 699999999999999999999999987765554 66888888 8777764 3468999998 6544
No 15
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=100.00 E-value=6.6e-34 Score=302.17 Aligned_cols=204 Identities=19% Similarity=0.240 Sum_probs=179.2
Q ss_pred hcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccC-CCeEEEEcCCCCCeEEEeCCCCEEE
Q 012299 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV-FDEVIINMGSMNNIITFDKGSGVLV 184 (466)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~-~~gVvIdl~~ln~I~~id~~~~~v~ 184 (466)
+..|.......|.+|++|+|++||+++|++|+++++||+++||||++.|.+.+. .+|++|||++||+| ++|+++++++
T Consensus 35 n~r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrGgGh~~~g~~~~~~~ggvvIdl~~m~~i-~vd~~~~~v~ 113 (495)
T 3fw9_A 35 NPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRV-SIDLESETAW 113 (495)
T ss_dssp CGGGCSTTSCCCSEEECCCSHHHHHHHHHHHHTSSCEEEEESSCCCTTCTTSCCSSCEEEEECTTCCCE-EEETTTTEEE
T ss_pred hcccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCccccCCCCeEEEECCCCCcE-EEeCCCCEEE
Confidence 345766677899999999999999999999999999999999999998887653 36899999999999 9999999999
Q ss_pred EeCCCcHHHHHHHHHhC--CCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccC
Q 012299 185 CEAGCILENLVSFLDDH--GFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 262 (466)
Q Consensus 185 veaGv~l~~L~~~l~~~--Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~ 262 (466)
||||+++.+|.++|.++ |+.+| +|+.+.++|||+++++++|..+.+||.++|+|++++||++||++++ ++
T Consensus 114 V~aG~~l~~l~~~l~~~g~gl~~~--~G~~~~vgigG~~~gGg~G~~~~~~G~~~D~v~~~~vV~adG~i~~------~~ 185 (495)
T 3fw9_A 114 VESGSTLGELYYAITESSSKLGFT--AGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILD------RQ 185 (495)
T ss_dssp EETTCBHHHHHHHHHHHCSSEECC--CCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEEC------HH
T ss_pred EcCCCCHHHHHHHHHHhcCCceec--cCCCCCCeEeeeccCCCCcccccCCCchhheEEEEEEEcCCCCEEE------cC
Confidence 99999999999999999 66666 5888899999999999999999999999999999999999999996 12
Q ss_pred CCCCchhhhhhc-CCCCceEEEEEEEEccCCCcceeEEEEEcC-CHHHHHHHHHHHHH
Q 012299 263 NTGYDLKHLFIG-SEGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLLREAKR 318 (466)
Q Consensus 263 ~~G~dL~~l~~G-s~GtlGIIT~v~l~l~p~p~~~~~~~~~~~-~~~~~~~~~~~~~~ 318 (466)
..++||+|+++| ++|+|||||+++||++|.|+....+.+.++ +.+++.+++..+++
T Consensus 186 ~~~~DLf~a~rGg~~g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~a~~~l~~~~~ 243 (495)
T 3fw9_A 186 AMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQF 243 (495)
T ss_dssp HHCHHHHHHHTTSCTTSSCEEEEEEEECEECCSSEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCChhhhhhhhcccCCCcEEEEEEEEEEEeCCCeEEEEEEeecCcHHHHHHHHHHHHH
Confidence 367899999998 889999999999999999987766655553 34666666665543
No 16
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=100.00 E-value=1.4e-33 Score=300.71 Aligned_cols=206 Identities=17% Similarity=0.246 Sum_probs=178.8
Q ss_pred cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcc-cCCCeEEEEcCCCCCeEEEeCCCCEEEE
Q 012299 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV-PVFDEVIINMGSMNNIITFDKGSGVLVC 185 (466)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~-p~~~gVvIdl~~ln~I~~id~~~~~v~v 185 (466)
..|+......|.+|++|+|++||+++|++|+++++|++++||||++.|.+. +..+||+|||++||+| ++|+++++++|
T Consensus 44 ~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V 122 (518)
T 3vte_A 44 LRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSI-KIDVHSQTAWV 122 (518)
T ss_dssp GGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEESSCCCTTCTTTCCSSSEEEEECTTCCCE-EEETTTTEEEE
T ss_pred cccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCCCCeEEEECCCCcee-EEeCCCCEEEE
Confidence 357666778999999999999999999999999999999999999988775 3357999999999999 89999999999
Q ss_pred eCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEeccCCcccCCCC
Q 012299 186 EAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTG 265 (466)
Q Consensus 186 eaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~~~~~~~k~~~G 265 (466)
|||+++.+|.++|.++|+.+.+.+|+.++++|||+++++++|..+.+||.++|+|+++|||++||++++.. ..+
T Consensus 123 ~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~------~~~ 196 (518)
T 3vte_A 123 EAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRK------SMG 196 (518)
T ss_dssp ETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHH------HHC
T ss_pred eCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCCCccccCCCCchhheEEEEEEEccCCeEEEee------ccc
Confidence 99999999999999986554444688888999999999999999999999999999999999999999531 246
Q ss_pred CchhhhhhcC-CCCceEEEEEEEEccCCCcceeEEEEEcC-CHHHHHHHHHHHHHh
Q 012299 266 YDLKHLFIGS-EGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLLREAKRK 319 (466)
Q Consensus 266 ~dL~~l~~Gs-~GtlGIIT~v~l~l~p~p~~~~~~~~~~~-~~~~~~~~~~~~~~~ 319 (466)
+||+|+++|+ +|+|||||+++||++|.|+....+.+.+. +.+++.+++..+++.
T Consensus 197 ~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (518)
T 3vte_A 197 EDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNI 252 (518)
T ss_dssp HHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_pred cchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHHH
Confidence 8999999998 89999999999999999986655545443 556777777776653
No 17
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=100.00 E-value=1.2e-33 Score=301.18 Aligned_cols=225 Identities=15% Similarity=0.184 Sum_probs=185.8
Q ss_pred HHHHHHhhCCCc--ee-eChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCccc-
Q 012299 83 VSYFKELLGEKS--VI-QDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP- 158 (466)
Q Consensus 83 l~~L~~ilg~~~--v~-~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p- 158 (466)
+++|++.++... +. .++..+......|+..+.+.|.+|++|+|++||+++|++|+++++|++++||||++.+.+.+
T Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~~~~~~~ 85 (503)
T 1zr6_A 6 FNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG 85 (503)
T ss_dssp TCHHHHHHHHTTCEECCTTSHHHHHHTSCSBGGGCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTTTS
T ss_pred HHHHHHhhCcCCceecCCCccchHHHhhhhhhcccCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCCcccC
Confidence 456777776433 22 23334444456687788899999999999999999999999999999999999999886654
Q ss_pred CCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCC-CCcccCCCCCCCceecCCcCCCccccCcccccccc
Q 012299 159 VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHG-FIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLH 237 (466)
Q Consensus 159 ~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~G-l~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~ 237 (466)
..++++|||++||+| ++| ++++++||||+++.+|.++|.++| +.+|. |....++|||.+.+++.|+.+.+||.++
T Consensus 86 ~~~gvvIdl~~l~~i-~~d-~~~~v~v~aG~~~~~l~~~l~~~~gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~ 161 (503)
T 1zr6_A 86 EDGHLMLELDRMYRV-SVD-DNNVATIQGGARLGYTALELLDQGNRALSH--GTCPAVGVGGHVLGGGYGFATHTHGLTL 161 (503)
T ss_dssp SSSCEEEECTTCCCE-EEC-TTSCEEEETTCBHHHHHHHHHHTTSEECCC--CSCTTSBHHHHHHHCCCSTTHHHHCCGG
T ss_pred CCCcEEEECccCCCE-EEC-CCCeEEEecCCCHHHHHHHHHHcCCEEeCC--CCCCcCchhhhhcCCCCCcccccccChh
Confidence 456899999999999 999 888999999999999999996664 88773 5566778999999999999999999999
Q ss_pred ccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcC-CHHHHHHHHHHH
Q 012299 238 GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLLREA 316 (466)
Q Consensus 238 d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~-~~~~~~~~~~~~ 316 (466)
|+|+++|||++||++++++.. .++||+|+++|++|+|||||+++||++|.|+....+.+.+. +.+++.+++..+
T Consensus 162 D~v~~~~vV~a~G~i~~~~~~-----~~~dL~~a~rG~~g~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (503)
T 1zr6_A 162 DWLIGATVVLADASIVHVSET-----ENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKAL 236 (503)
T ss_dssp GGEEEEEEECTTSCEEEEBTT-----BSHHHHHHHTTCCSSSCEEEEEEECCEECCSCEEEEEEEECCCHHHHHHHHHHH
T ss_pred heEEEEEEEecCCCEEEeCCC-----CCccHHHHHhccCCCcEEEEEEEEEEEecCceeEEEEEEEeCCHHHHHHHHHHH
Confidence 999999999999999998754 57899999999999999999999999999986554444442 344444444443
No 18
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=100.00 E-value=3.3e-33 Score=299.06 Aligned_cols=205 Identities=20% Similarity=0.278 Sum_probs=175.5
Q ss_pred eChhHHHhhh-cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEE
Q 012299 97 QDEDVLLAAN-EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIIT 175 (466)
Q Consensus 97 ~~~~~~~~y~-~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~ 175 (466)
.++..+.... +.|+.++.+.|.+|++|+|++||+++|++|+++++|++++||||++.|.+.+..++|+|||++||+| +
T Consensus 37 p~d~~Y~~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~gvvIdl~~m~~i-~ 115 (523)
T 2wdx_A 37 PDDPRYLNLKLRGANSRFNGEPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDVKVIIDMSLLTEI-A 115 (523)
T ss_dssp TTSTTHHHHHTCSSCTTCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCSSSSSSSTTCCEEEECTTCCCE-E
T ss_pred CCCcchHHHHhhhhhhcccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccCCCCeEEEEcccCCCE-E
Confidence 3444455555 6777778889999999999999999999999999999999999999987776567999999999999 9
Q ss_pred EeCCCCEEEEeCCCcHHHHHHHHH-hCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecC--Cce
Q 012299 176 FDKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLAN--GDV 252 (466)
Q Consensus 176 id~~~~~v~veaGv~l~~L~~~l~-~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~d--G~i 252 (466)
+|+++.+++||||+++.+|.++|. ++|+.++. |++++++|||+++++++|+.+.+||.++|+|+++|||++| |++
T Consensus 116 ~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G~v 193 (523)
T 2wdx_A 116 YDPSMNAFLIEPGNTLSEVYEKLYLGWNVTIPG--GVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNKQGKA 193 (523)
T ss_dssp EETTTTEEEECTTCBHHHHHHHHHHHHSCCCCC--CCCTTCBHHHHHHHTCCCTTHHHHCCGGGGEEEEEEEEECTTSCE
T ss_pred EcCCCCEEEEcCCCCHHHHHHHHHHhcCeEEcc--CCCCCCeeCccccCCCCCcccccccChhheEEEEEEEEecCCccE
Confidence 999999999999999999999998 49999885 7788889999999999999999999999999999999955 998
Q ss_pred EeccCCcccCCCCCchhhhhhc-CCCCceEEEEEEEEc-----------cCCCcc-eeEEEEEcC
Q 012299 253 IDMLGTLRKDNTGYDLKHLFIG-SEGSLGIVTKVSIHT-----------PPKLSS-VNLAFLACK 304 (466)
Q Consensus 253 ~~~~~~~~k~~~G~dL~~l~~G-s~GtlGIIT~v~l~l-----------~p~p~~-~~~~~~~~~ 304 (466)
+.+.....+++.+|||+|+++| ++|+|||||+++||+ +|.|+. .....+.|+
T Consensus 194 ~~~~~~~~~~~~~~DLf~a~rGgg~g~~GIVt~~~l~l~~~~~~~~~~~~p~~~~~~~~~~~~~~ 258 (523)
T 2wdx_A 194 RVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVPEDVGRNPERLLPKPPATLLTSTVTFD 258 (523)
T ss_dssp EEEEEESCTTCTTHHHHHHTTTSCSSSSSEEEEEEECCSSCCCSCGGGSSCCCCSEEEEEEEECC
T ss_pred EEEecccccCCCChHHHHHhhccCCCCcEEEEEEEEEeecccCCCcccccCCCcccEEEEEEEec
Confidence 6553222234566779999996 569999999999999 999863 444555554
No 19
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=100.00 E-value=7.5e-33 Score=296.25 Aligned_cols=203 Identities=20% Similarity=0.290 Sum_probs=174.5
Q ss_pred hCCCceeeChhHHHhhh-cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcC
Q 012299 90 LGEKSVIQDEDVLLAAN-EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMG 168 (466)
Q Consensus 90 lg~~~v~~~~~~~~~y~-~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~ 168 (466)
.+...+..++..+.... +.|+.++.+.|.+|++|+|++||+++|++|+++++|+.++||||++.|.+.+..+||+|||+
T Consensus 28 ~~~~v~~p~d~~Y~~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGh~~~g~~~~~~~gvvIdl~ 107 (521)
T 2ipi_A 28 TALVKVDRVDRRYQDLVTRGFNGRFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRAVIDMS 107 (521)
T ss_dssp -CCCEEESSSTTHHHHHTCCSCTTCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCTTCGGGCTTCCEEEECT
T ss_pred CCCeEECCCCcchHHHHhccccccccCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCCcccCCCeEEEecc
Confidence 34444555666666665 77888888999999999999999999999999999999999999998877655679999999
Q ss_pred CCCCeEEEeCCCCEEEEeCCCcHHHHHHHHH-hCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEe
Q 012299 169 SMNNIITFDKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVL 247 (466)
Q Consensus 169 ~ln~I~~id~~~~~v~veaGv~l~~L~~~l~-~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl 247 (466)
+||+| ++|+++.+++||||+++.+|.++|. ++|+.+|. |....++|||++++++.|+.+.+||.++|+|+++|||+
T Consensus 108 ~l~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~ 184 (521)
T 2ipi_A 108 QMRQV-FYDSGKRAFAVEPGATLGETYRALYLDWGVTIPA--GVCPQVGVGGHVLGGGYGPLSRRDGVVADHLYAVEVVV 184 (521)
T ss_dssp TCCCE-EEETTTTEEEECTTSBHHHHHHHHHHHHSBCCCC--CSCTTCBHHHHTTTTCCCTTHHHHCCGGGGEEEEEEEE
T ss_pred cCCCe-EEeCCCCEEEEeCCcCHHHHHHHHHHhcCceeCC--CCCCCcccCCcccCCCCCccccccccHhhcEEEEEEEE
Confidence 99999 9999999999999999999999997 79999874 55667899999999999999999999999999999999
Q ss_pred cC--CceEeccCCcccCCCCCchhhhhhcC-CCCceEEEEEEEEc-----------cCCCcc
Q 012299 248 AN--GDVIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT-----------PPKLSS 295 (466)
Q Consensus 248 ~d--G~i~~~~~~~~k~~~G~dL~~l~~Gs-~GtlGIIT~v~l~l-----------~p~p~~ 295 (466)
+| |+++.......+++.++||+|+++|+ +|+|||||+++||+ +|.|+.
T Consensus 185 ~d~~G~i~~~~~~~~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~~~~~~~~~~~~p~~~~ 246 (521)
T 2ipi_A 185 VDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTPGATGTDPSQLLPKAPT 246 (521)
T ss_dssp ECTTSCEEEEEEECCTTCTTHHHHHHTTTSCSSSSCEEEEEEECCSSCCSSCGGGSSCBCCS
T ss_pred ecCCccEEEEecccccCCCCHHHHHHHhcCCCCceEEEEEEEEEeecccCCCcccccCCCCc
Confidence 77 99755432222344556799999985 79999999999999 998763
No 20
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=100.00 E-value=1.4e-32 Score=292.48 Aligned_cols=195 Identities=13% Similarity=0.167 Sum_probs=170.2
Q ss_pred hCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCC
Q 012299 90 LGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS 169 (466)
Q Consensus 90 lg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ 169 (466)
+....+..++..+......|+.++.+.|.+|++|+|++||+++|++|+++++||++|||||++.|.+.+..+|++|||++
T Consensus 8 ~~~~~~~p~~~~y~~~~~~~n~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrggGh~~~g~~~~~~~gvvIdl~~ 87 (501)
T 3pop_A 8 VPPFTVGREDPRYIELSHSDNHRFVVEPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRDLVLDLHN 87 (501)
T ss_dssp -CCEEEETTSTTHHHHTCCSCTTSCCCCSEEEECSSHHHHHHHHHHHHHTTCCEEEESSCCCSSSTTTSSCCSEEEECTT
T ss_pred CCCceECCCCcchHHHHHHHhhccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCccCCCccccCCCEEEEEecc
Confidence 33344455566677677788888899999999999999999999999999999999999999998887666799999999
Q ss_pred CCCeEEEeCCCCEEEEeCCCcHHHHHHHHH-hCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEe-
Q 012299 170 MNNIITFDKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVL- 247 (466)
Q Consensus 170 ln~I~~id~~~~~v~veaGv~l~~L~~~l~-~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl- 247 (466)
||+| ++|+++++++||||+++.+|.++|. ++|+.+| .|..++++|||.++++++|..+.+||.++|+|+++|||+
T Consensus 88 l~~i-~vd~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~--~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~evV~~ 164 (501)
T 3pop_A 88 LHAI-GPAADGAGVRVGSGATVDQVQKALFRRWNAALP--LGACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVAVV 164 (501)
T ss_dssp CCCE-EECTTSSSEEEETTCBHHHHHHHHHHHHSBCCC--CCSBTTCBHHHHHHHCCCCTTHHHHCCGGGGEEEEEEEEE
T ss_pred cCCe-EEcCCCCEEEEECCcCHHHHHHHHHhhcCeEeC--CCCCCCceEeeccccCCCcccccccccHHHhEEEEEEEEe
Confidence 9999 8999999999999999999999996 5799887 466778889999999999999999999999999999999
Q ss_pred -cCCc--eEeccCCcccCCCCCchhhhhhcC-CCCceEEEEEEEEc
Q 012299 248 -ANGD--VIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT 289 (466)
Q Consensus 248 -~dG~--i~~~~~~~~k~~~G~dL~~l~~Gs-~GtlGIIT~v~l~l 289 (466)
+||+ ++.+++. ....++||+|+++|+ +|+|||||+++||+
T Consensus 165 da~G~~~~v~~~~~--~~~~~~DLf~a~rG~G~g~fGIVt~~~lk~ 208 (501)
T 3pop_A 165 DESRTVRLVTARAD--DTGDLGELFWAHTGGGGGNFGVVTAYEFRS 208 (501)
T ss_dssp CTTSCEEEEEEETT--CCHHHHHHHHHTTTSCTTSSCEEEEEEECC
T ss_pred cCCCCEEEEEeccC--CCCCCccHHHHhhccCCCCcEEEEEEEEEe
Confidence 8999 5554321 123568999999998 79999999999999
No 21
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=99.98 E-value=7.9e-32 Score=288.73 Aligned_cols=195 Identities=20% Similarity=0.251 Sum_probs=168.2
Q ss_pred eChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEE
Q 012299 97 QDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITF 176 (466)
Q Consensus 97 ~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~i 176 (466)
.++..+......|+.++.+.|.+|++|+|++||+++|++|+++++||+++||||++.|.+.+..+||+|||++||+| ++
T Consensus 39 p~~~~Y~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~gvvIdl~~l~~i-~~ 117 (530)
T 2y3s_A 39 PGDIRYEDLRRGENLRFVGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVRVVMDMSRLSAV-GF 117 (530)
T ss_dssp TTSTTHHHHTCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHTTCCEEEESSCCCSSSTTTCTTCCEEEECTTCCCE-EE
T ss_pred CCCccHHHHHhHhhhhccCCCCEEEecCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccCCCeEEEEcccCCCE-EE
Confidence 34555666667787788899999999999999999999999999999999999999887765567999999999999 99
Q ss_pred eCCCCEEEEeCCCcHHHHHHHHHh-CCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEe--cCCceE
Q 012299 177 DKGSGVLVCEAGCILENLVSFLDD-HGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVL--ANGDVI 253 (466)
Q Consensus 177 d~~~~~v~veaGv~l~~L~~~l~~-~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl--~dG~i~ 253 (466)
|+++.+|+||||+++.+|.++|.+ +|+.++. |++++++|||++++++.|+.+.+||.++|+|+++|||+ +||+++
T Consensus 118 d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G~i~ 195 (530)
T 2y3s_A 118 DEERGAFAVEAGATLGAVYKTLFRVWGVTLPG--GACPDVGAGGHILGGGYGPLSRMHGSIVDYLHAVEVVVVDASGDAR 195 (530)
T ss_dssp ETTTTEEEEETTCBHHHHHHHHHHHHSCCCCC--CSCTTCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEEEECTTSCEE
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHhhcCeEEeC--CCCCCCCcCCCcCCCCCCcccccccchhhheeeEEEEEecCCCcEE
Confidence 999999999999999999999985 8998874 78888899999999999999999999999999999999 559985
Q ss_pred eccCCcccCCCCCchhhhhhcC-CCCceEEEEEEEEc------------cCCCc
Q 012299 254 DMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT------------PPKLS 294 (466)
Q Consensus 254 ~~~~~~~k~~~G~dL~~l~~Gs-~GtlGIIT~v~l~l------------~p~p~ 294 (466)
.+.......+..+||+|+++|+ +|+|||||+++||+ +|.|+
T Consensus 196 ~v~~~~~~~~~d~DLf~a~rG~g~g~fGIVt~~~l~l~~~~~~~~~~~~~p~~~ 249 (530)
T 2y3s_A 196 TVIATREPSDPNHDLWWAHTGGGGGNFGVVVRYWLRTAEADVPPEPGRLLPRPP 249 (530)
T ss_dssp EEEEESCTTCTTHHHHHHTTTSCTTSSCEEEEEEECCCCSSCCSCGGGSSCCCC
T ss_pred EEeccccccCCChHHHHHHhcCCCCCcEEEEEEEEEeecccCccccccccCCCC
Confidence 4321100112233599999987 69999999999999 99875
No 22
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=99.97 E-value=2.2e-30 Score=279.32 Aligned_cols=201 Identities=19% Similarity=0.288 Sum_probs=169.7
Q ss_pred hhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCC-----cccCCCeEEEEc-CCCCC
Q 012299 99 EDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG-----SVPVFDEVIINM-GSMNN 172 (466)
Q Consensus 99 ~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~-----~~p~~~gVvIdl-~~ln~ 172 (466)
+..+..+.++|+..+.+.|.+|++|+|++||+++|++|+++++|++++|+|||+.+. ..+ .+|++||| ++||+
T Consensus 18 ~~~y~~~~~~w~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~v~~~G~G~s~~~~~l~~~~~~-~~gvvIdl~~~l~~ 96 (561)
T 2i0k_A 18 IALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANV-EKVILADTMTHLNG 96 (561)
T ss_dssp SCCEEEEEECTTSSSEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECCCCCCCTTSSCTTCCC-TTEEEEECTTTSCC
T ss_pred CHhHHHHHhhhhhccCCCCCEEEecCCHHHHHHHHHHHHHCCCcEEEECCCCCcccccccCCCcC-CCeEEEechhhCCc
Confidence 333444567898889999999999999999999999999999999999999998542 222 36899999 89999
Q ss_pred eEEEeC--CCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccC----------ccccccccccE
Q 012299 173 IITFDK--GSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR----------LVRYGSLHGNV 240 (466)
Q Consensus 173 I~~id~--~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~----------~~~yG~~~d~V 240 (466)
| ++|+ ++++|+||||+++.+|.++|.++|+.+|+.|+. +.+||||++++|+||.. +.+||.++|+|
T Consensus 97 i-~vd~~~~~~~v~v~aGv~l~~L~~~l~~~Gl~l~~~~~~-~~~TvGG~i~~~~~G~~l~~gG~~~~s~~~~G~~~d~V 174 (561)
T 2i0k_A 97 I-TVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAP-GVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLV 174 (561)
T ss_dssp E-EEECCSSSCEEEEETTSBHHHHHHHHHHTTEECSSCCSC-TTCBHHHHHHTTCCCSCCCCTTCCCCTTCCSSCGGGGE
T ss_pred e-EecCcCCccEEEEcCCCCHHHHHHHHHHcCCcccccCCC-CCcccCCCcccCCcccccccCCcccccccccccHhheE
Confidence 9 9998 788999999999999999999999999988876 56899999999999986 77899999999
Q ss_pred EEEEEEecCCc---eEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHH
Q 012299 241 LGLEAVLANGD---VIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQK 311 (466)
Q Consensus 241 ~~levVl~dG~---i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~ 311 (466)
+++|+|++||+ ++++.+ + .+||+++++|. |. ||||+++||+.|.|+.....+..++ ++++.+
T Consensus 175 ~~~evV~~dG~~~~~~~~~~----~--~~dl~~a~~g~-G~-giIt~~tl~l~p~~~~~~~~~~~~~-~~~~l~ 239 (561)
T 2i0k_A 175 TELTAVVWNGTTYALETYQR----N--DPRITPLLTNL-GR-CFLTSVTMQAGPNFRQRCQSYTDIP-WRELFA 239 (561)
T ss_dssp EEEEEEEECSSSEEEEEEET----T--SGGGHHHHSCT-TS-SCEEEEEEECEECCEEEEEEECCSC-HHHHTC
T ss_pred EEEEEEeCCCCEEEeeeccC----C--CccHHHHHhcC-CC-EEEEEEEEEEEECCceEEEEEEccC-HHHHHH
Confidence 99999999999 555543 2 35898888854 55 8999999999999987665554444 555444
No 23
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=99.97 E-value=7.7e-31 Score=264.16 Aligned_cols=196 Identities=16% Similarity=0.287 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHhhCCCceeeChhHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcc
Q 012299 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV 157 (466)
Q Consensus 78 ~~~~~l~~L~~ilg~~~v~~~~~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~ 157 (466)
|+++++++|+++++++++.++ ..+..|++ +++++.|+++++|+|++||++++++|+++++|++++|+|||+.++..
T Consensus 20 ~~~~~~~~L~~~lg~~~v~~~-~~l~~~tt---~~igg~p~~vv~P~s~eev~~~v~~a~~~~~pv~v~GgGsnl~~~~~ 95 (322)
T 3tx1_A 20 FQSNAMNNLQTKFPHIAIKLN-EPLSKYTY---TKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNLIIKDG 95 (322)
T ss_dssp -----CCCHHHHCTTSEEEEE-EEGGGGST---TSCCCEEEEEEECSSHHHHHHHHHHHHHTTCCEEEESCCTTEEECTT
T ss_pred cCHHHHHHHHHhcCCcceEcC-cchHHhcc---CCcCceeeEEEEeCCHHHHHHHHHHHHHcCCcEEEECCccCCCcCCC
Confidence 666788899999999888887 56888983 57889999999999999999999999999999999999999976554
Q ss_pred cCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccc-cc
Q 012299 158 PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRY-GS 235 (466)
Q Consensus 158 p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~y-G~ 235 (466)
+ .+|++|||++||+| .+|. .+++|+||++|.+|.+++.++|+. +...++.+ +||||++++|+|| | |.
T Consensus 96 ~-~~gvvI~l~~~~~I-~~d~--~~v~v~aG~~~~~l~~~l~~~Gl~Gle~~~giP--gTVGGav~~NaGg-----yGg~ 164 (322)
T 3tx1_A 96 G-IRGVILHLDLLQTI-ERNN--TQIVAMSGAKLIDTAKFALNESLSGLEFACGIP--GSIGGALHMNAGA-----YGGE 164 (322)
T ss_dssp C-EEEEEEECTTCCCE-EEET--TEEEEETTSBHHHHHHHHHHTTEESCGGGTTCC--SBHHHHHHHTCEE-----TTEE
T ss_pred C-CCeEEEECCCCCcE-EECC--CEEEEecCcCHHHHHHHHHHcCCcccccCCCCc--chhHHHHHhCccC-----cccc
Confidence 3 35899999999999 5763 599999999999999999999995 22223443 4699999999999 7 68
Q ss_pred ccccEEEEEEEecCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCc
Q 012299 236 LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS 294 (466)
Q Consensus 236 ~~d~V~~levVl~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~ 294 (466)
++|+|+++++|++||++++++. +..+|++.+.+.|+++ ||||+++||+.|.|+
T Consensus 165 ~~d~v~~vevV~~~G~i~~~~~----~~~~~~yR~s~~g~~~--~IIt~~tl~L~p~~~ 217 (322)
T 3tx1_A 165 ISDVLEAATVLTQTGELKKLKR----SELKAAYRFSTIAEKN--YIVLDATFSLALEEK 217 (322)
T ss_dssp HHHHEEEEEEECTTSCEEEEEG----GGCC--CC-CTTTGGG--CEEEEEEEECEECCH
T ss_pred hHhhEEEEEEEcCCCCEEEech----HHcCcchhhcccCCCC--EEEEEEEEEEEeCCH
Confidence 9999999999999999998764 3467777777777765 799999999999975
No 24
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=99.97 E-value=3.3e-30 Score=274.27 Aligned_cols=194 Identities=17% Similarity=0.289 Sum_probs=165.7
Q ss_pred hcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCC-----CCcccCCCeEEEEcC-CCCCeEEEeCC
Q 012299 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV-----GGSVPVFDEVIINMG-SMNNIITFDKG 179 (466)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~-----g~~~p~~~gVvIdl~-~ln~I~~id~~ 179 (466)
.++|+..+.+.|.+|++|+|++||+++|++|+++++||+++|+|||+. ++. +..+||+|||+ +||+| ++|++
T Consensus 19 ~~nWs~~~~~~P~~vv~P~s~eEV~~~Vk~A~~~~~pv~v~GgGhs~~~l~~~gG~-~~~~GVvIdls~~Ln~I-~vD~~ 96 (540)
T 3js8_A 19 FKNWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGV-SCPAVVLLDTTRYLTAM-SIDAS 96 (540)
T ss_dssp EECTTSCCEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECSCCCSSCSSCCTTC-SSCSEEEEETTTTCCCE-EEECS
T ss_pred eeccccccCCCccEEEEcCCHHHHHHHHHHHHHcCCeEEEEeCCCCcccccccCCC-CCCCeEEEECcCcCCCE-EECCC
Confidence 467888889999999999999999999999999999999999999996 554 55789999996 69999 99985
Q ss_pred --CCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccC----------ccccccccccEEEEEEEe
Q 012299 180 --SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR----------LVRYGSLHGNVLGLEAVL 247 (466)
Q Consensus 180 --~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~----------~~~yG~~~d~V~~levVl 247 (466)
..+|+||||+++.+|.++|.++|+.++..+++ +.+||||++++|+||.+ +.+||.++|+|+++++|+
T Consensus 97 ~~~~tVtV~AGv~l~~L~~~L~~~GL~l~~~~gi-~~~TVGGaia~gagG~~~~~~G~~~~~g~~~G~~~D~V~~levV~ 175 (540)
T 3js8_A 97 GPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAP-GDLTLGGVLAINGHGTAIPAKGERRLAGASYGSISNLVLSLTAVV 175 (540)
T ss_dssp SSSEEEEEETTSBHHHHHHHHHHTTEECSCCCSC-SCSBHHHHHHTTCCCCBCCCTTCCCCTTCCSSCGGGGEEEEEEEE
T ss_pred CCccEEEEccCCCHHHHHHHHHHcCCEEEecCCC-CCeEEcccccCCCCcccccccccccccccccccHHHhEEEEEEEc
Confidence 57999999999999999999999999988876 45899999999999986 479999999999999999
Q ss_pred cCCc-----eEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHH
Q 012299 248 ANGD-----VIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQK 311 (466)
Q Consensus 248 ~dG~-----i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~ 311 (466)
+||+ +++++. .++||++++.|+ |+ ||||+++||++|.+......+. .-+++++.+
T Consensus 176 adG~~~~~~i~~~s~------~~~DL~a~r~G~-G~-gIVTevtlrl~P~~~l~~~~~~-~~~~~e~l~ 235 (540)
T 3js8_A 176 YDKASGAYALRKFAR------NDPQIAPLLAHV-GR-SLIVEATLQAAPNQRLRCQSWF-NIPYGEMFA 235 (540)
T ss_dssp EETTTTEEEEEEEET------TSGGGHHHHTCT-TS-SCEEEEEEEEEECCEEEEEEEC-CSCHHHHTC
T ss_pred CCCCCceeeEEEeCC------CChhHHHHHhcC-CC-eEEEEEEEEEEECCceEEEEEe-cCCHHHHHh
Confidence 9998 665542 468997776665 77 6999999999999876544321 236676654
No 25
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=99.94 E-value=9.9e-26 Score=228.50 Aligned_cols=203 Identities=15% Similarity=0.127 Sum_probs=160.6
Q ss_pred HHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCC-
Q 012299 102 LLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGS- 180 (466)
Q Consensus 102 ~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~- 180 (466)
++.|+ ++++++.|+++++|+|++||++++++|+++++|++++|||||+.+... .+|+||+++ |++|..++.++
T Consensus 3 L~~~t---t~~igg~a~~~v~p~s~eel~~~l~~a~~~~~pv~vlGgGSnll~~d~--~~GvVI~l~-~~~i~~i~~~~~ 76 (340)
T 1uxy_A 3 LKPWN---TFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLED--YRGTVIINR-IKGIEIHDEPDA 76 (340)
T ss_dssp CGGGS---TTCCCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEEESSCTTEEECSC--EEEEEEEEC-CCCEEEEECSSE
T ss_pred ccccc---cCCCCccccEEEEeCCHHHHHHHHHHHHHcCCCEEEECCCcCCcccCC--CCeEEEEcc-CCCcEEEecCCC
Confidence 45566 568899999999999999999999999999999999999999977653 368999996 99997777766
Q ss_pred CEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccccc-ccccEEEEEEEec-CCceEeccC
Q 012299 181 GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLA-NGDVIDMLG 257 (466)
Q Consensus 181 ~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~-~~d~V~~levVl~-dG~i~~~~~ 257 (466)
.+++|+||++|.+|.+++.++|+. +....+.+ +||||++++|+|+ ||. ++|+|.++++|++ ||++++++.
T Consensus 77 ~~v~vgAG~~~~~l~~~~~~~Gl~Gle~~~gIP--GtVGGa~~~NaGa-----yG~ei~d~v~~v~vv~~~~G~v~~~~~ 149 (340)
T 1uxy_A 77 WYLHVGAGENWHRLVKYTLQEGMPGLENLALIP--GCVGSSPIQNIGA-----YGVELQRVCAYVDSVELATGKQVRLTA 149 (340)
T ss_dssp EEEEEETTSBHHHHHHHHHHTTCCSCGGGTTCC--SBGGGTTTTTCEE-----TTEEGGGTEEEEEEEETTTTEEEEEET
T ss_pred eEEEEecCCCHHHHHHHHHHCCCCccccccCCc--cchhHHHHhcccc-----chhhHHhheeEEEEEECCCCcEEEEeH
Confidence 689999999999999999999996 55445555 3699999999988 995 9999999999997 999998875
Q ss_pred CcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCccee----EEEE--EcCCHHHHHHHHHHHHHhc
Q 012299 258 TLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVN----LAFL--ACKDYFSCQKLLREAKRKL 320 (466)
Q Consensus 258 ~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~----~~~~--~~~~~~~~~~~~~~~~~~~ 320 (466)
. ....||... .+.+++|++||||+++||+.|.|.... ...+ ..++..+..+.+.++|+..
T Consensus 150 ~--d~~~gYR~s-~~~~~~~~~gIVt~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~k 215 (340)
T 1uxy_A 150 K--ECRFGYRDS-IFKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTK 215 (340)
T ss_dssp G--GGTCBTTBC-GGGTTTTTTEEEEEEEEEEESSCCCCCCSGGGGGSCTTTCCHHHHHHHHHHHHHHH
T ss_pred H--HhccccCcC-ccCCcCCCCEEEEEEEEEEEcCCCccCCHHHHhhhccccccHHHHHHHHHHHHHhc
Confidence 4 223455432 344556789999999999999863210 0000 1235567777777777543
No 26
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=99.94 E-value=2.5e-26 Score=233.87 Aligned_cols=216 Identities=14% Similarity=0.094 Sum_probs=166.4
Q ss_pred hHHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeC-
Q 012299 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDK- 178 (466)
Q Consensus 100 ~~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~- 178 (466)
..++.|+ +++++++|+++++|+|++||++++++|+++++|++++|+|||+.++.. .+|+||+++ |++| ++++
T Consensus 17 ~~L~~~t---t~~igg~a~~vv~p~s~eel~~~v~~a~~~~ipv~vlGgGSNll~~d~--~~GvVI~l~-~~~i-~v~~~ 89 (357)
T 3i99_A 17 ANLKPYH---TFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNMLFTCH--YTGMIVVNR-LNGI-EHQQD 89 (357)
T ss_dssp EESGGGS---TTCCSCEEEEEEEECSHHHHHHHHSSSTTTTSCEEEESSCTTEEECSC--EEEEEEEEC-CCCE-EEEEC
T ss_pred Ccchhhc---cCCCCccceEEEEECCHHHHHHHHHHHHHcCCCEEEECCCcCcccCCC--CCeEEEEcC-CCce-EEecc
Confidence 4577787 678999999999999999999999999999999999999999976654 358999998 9998 6653
Q ss_pred -CCCEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCcccccc-ccccEEEEEEEec-CCceEe
Q 012299 179 -GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLA-NGDVID 254 (466)
Q Consensus 179 -~~~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~-~~d~V~~levVl~-dG~i~~ 254 (466)
++.+++|+||++|.+|.+++.++|+. +....+.++ ||||++++|+|. ||. ++|+|+++++|++ ||++++
T Consensus 90 ~~~~~v~v~AG~~~~~l~~~a~~~Gl~GlE~l~gIPG--tVGGav~~NaGa-----YG~e~~d~v~~vevv~~~~G~i~~ 162 (357)
T 3i99_A 90 DDYHRLHVAGGEDWPSLVSWCVEQGIGGLENLALIPG--CAGSAPIQNIGA-----YGVEFKDVCDYVEYLCLETGTVKR 162 (357)
T ss_dssp SSEEEEEEETTSBHHHHHHHHHHTTCTTCGGGTTCCS--BGGGTTTTTCEE-----TTEEGGGTEEEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCcHHHHHHHHHHcCCcCccccCCCCc--hhHHHHHhchhh-----hhhhHHhhEeEEEEEECCCCcEEE
Confidence 45689999999999999999999997 554455554 699999999986 997 9999999999998 999998
Q ss_pred ccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeE-----EEEEcCCHHHHHHHHHHHHHhcC----Ccce
Q 012299 255 MLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNL-----AFLACKDYFSCQKLLREAKRKLG----EILS 325 (466)
Q Consensus 255 ~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 325 (466)
.+... ...+|.. -.+.+++|++||||+++|||.|.+..... ..+...+.++..+.+.++|+... ..++
T Consensus 163 ~~~~d--l~f~YR~-s~~~~~~g~~gIIt~v~f~L~p~~~~~~~y~~l~~~l~~~~~~~~~~~v~~~R~~k~p~P~~~~s 239 (357)
T 3i99_A 163 LTMEE--CQFGYRD-SIFKHQLYQKAVVTAVGLKFAKAWQPIIQYGPLKDLSSDCAIHDVYQRVCATRMEKLPDPAVMGN 239 (357)
T ss_dssp EETGG--GCCBTTB-CGGGTTTTTTEEEEEEEEEEESSCCCCCCSGGGGGSCTTCCHHHHHHHHHHHHHHHSCCTTTSCE
T ss_pred EeHHH--cCccccc-ccCCCccCCCEEEEEEEEEEEeCCccccchHHHHhhhccCCHHHHHHHHHHHHhcCCCCCCCCCc
Confidence 86542 1233332 12344557999999999999998642110 00023566777777777776532 2355
Q ss_pred eEEecch
Q 012299 326 AFEFLDN 332 (466)
Q Consensus 326 a~E~~D~ 332 (466)
+=-++-+
T Consensus 240 aGS~FkN 246 (357)
T 3i99_A 240 AGSFFKN 246 (357)
T ss_dssp EEESBCC
T ss_pred cceeeeC
Confidence 5554433
No 27
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
Probab=99.91 E-value=1.1e-24 Score=213.69 Aligned_cols=178 Identities=20% Similarity=0.215 Sum_probs=140.3
Q ss_pred HHHhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCC
Q 012299 101 VLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGS 180 (466)
Q Consensus 101 ~~~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~p~~~gVvIdl~~ln~I~~id~~~ 180 (466)
+++.|+ +++++++|+ +++|+|++||++++ ++|++++|+|||+.++..+..+|++|++++||+| ++|.
T Consensus 10 ~l~~~t---t~~igg~a~-vv~p~s~edv~~~v------~ipv~v~GgGsnll~~d~~~~~GvVI~l~~~~~I-~vd~-- 76 (268)
T 2gqt_A 10 LLKDYT---TLGVGGPAE-LWTVETREELKRAT------EAPYRVLGNGSNLLVLDEGVPERVIRLAGEFQTY-DLKG-- 76 (268)
T ss_dssp EGGGGS---SSCCCCEEE-EEEECSHHHHHHHT------TSCEEECSSSSSEEECTTCCSSEEEEECGGGGCB-CTTS--
T ss_pred ChHHhc---ccccCcceE-EEEeCCHHHHHHHh------CCCeEEcCCCcCceecCCCcCCeEEEEcCCCCCc-EEcC--
Confidence 467777 357888899 99999999999999 8999999999999888777666999999999999 5652
Q ss_pred CEEEEeCCCcHHHHHHHHHhCCCC-cccCCCCCCCceecCCcCCCccccCccccc-cccccEEEEEEEecCCceEeccCC
Q 012299 181 GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SLHGNVLGLEAVLANGDVIDMLGT 258 (466)
Q Consensus 181 ~~v~veaGv~l~~L~~~l~~~Gl~-lp~~pgs~~~~tvGG~ia~na~G~~~~~yG-~~~d~V~~levVl~dG~i~~~~~~ 258 (466)
+|+||++|.+|.+++.++|+. +....+.+ +||||++++|+|+ || .++|+|+++++| +||++++.+..
T Consensus 77 ---~v~aG~~~~~l~~~~~~~Gl~Gle~~~giP--GtvGGav~~NaGa-----yG~e~~d~v~~v~vv-~~G~v~~~~~~ 145 (268)
T 2gqt_A 77 ---WVGAGTLLPLLVQEAARAGLSGLEGLLGIP--AQVGGAVKMNAGT-----RFGEMADALEAVEVF-HDGAFHVYCPE 145 (268)
T ss_dssp ---EEETTSBHHHHHHHHHHTTEESCGGGTTCC--CBHHHHHHTTCEE-----TTEEGGGGEEEEEEE-ETTEEEEECGG
T ss_pred ---EEECCCCHHHHHHHHHHcCCcCCccccCcc--chhHHHHHhcccc-----CchhHHhheeEEEEE-CCCcEEEEchH
Confidence 999999999999999999996 33334444 3799999999987 99 699999999999 99999998753
Q ss_pred cccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHHHH
Q 012299 259 LRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (466)
Q Consensus 259 ~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (466)
....+|+.. ....+ ||||+++||+.|.+ +.++++..+.+.++|+
T Consensus 146 --~l~~~YR~s--~~~~~---gIVt~~~~~L~~~~---------~~~i~~~~~~v~~~R~ 189 (268)
T 2gqt_A 146 --ELGFGYRKS--HLPPG---GIVTRVRLKLKERP---------KEEILRRMAEVDRARK 189 (268)
T ss_dssp --GSCCBTTBC--CCSTT---CEEEEEEECCEECC---------HHHHHHHHHHHHHHTT
T ss_pred --HcccccCCC--CcCCC---ceEEEEEEEEEeCC---------HHHHHHHHHHHHHHHH
Confidence 222333322 11223 39999999999984 2444555555555553
No 28
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}
Probab=99.90 E-value=4.2e-24 Score=203.95 Aligned_cols=128 Identities=23% Similarity=0.270 Sum_probs=117.6
Q ss_pred EEeCCCCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccccCccccccccccEEEEEEEecCCceEe
Q 012299 175 TFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVID 254 (466)
Q Consensus 175 ~id~~~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~~levVl~dG~i~~ 254 (466)
++|+++++++||||+++.+|+++|.++|+++|.+|++... ||||++++|+|| .+||.. |+|+++++|++||++++
T Consensus 2 ~vd~~~~~v~V~aGv~l~~L~~~l~~~Gl~~~~~Pg~~~~-tVGG~v~~nagG---~~yG~~-D~V~~vevV~~dG~i~~ 76 (219)
T 2yvs_A 2 EVHAADQYLVAPGEADLLEVHARLAGTGLFPPFPPVELPG-GVGGLVARGGFA---QTFFFP-AEVLGLTFRTPKGRRVR 76 (219)
T ss_dssp EEETTTTEEEEETTCCHHHHHHHHTTTTEECSSCSEECTT-HHHHHHHTTCSS---BSSCGG-GGEEEEEEECTTSCEEE
T ss_pred eEcCCCCEEEEcCCCcHHHHHHHHHHcCCEEeccCCCCCC-chhheeccCccc---ccCCCc-cEEEEEEEEeCCCCEEE
Confidence 7899999999999999999999999999999998987666 999999999999 789999 99999999999999999
Q ss_pred ccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHH
Q 012299 255 MLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYF 307 (466)
Q Consensus 255 ~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~ 307 (466)
++....|++.||||+++++|++|+|||||+++||++|.|+.....++.+.+++
T Consensus 77 ~~~~~~kn~~gydl~~~~~Gs~G~lGIVt~~tlrl~p~~~~~~~~~~~~~~~~ 129 (219)
T 2yvs_A 77 AGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLRPGRAQAFLRRPFSGSFP 129 (219)
T ss_dssp EECSSCSSSSCSCHHHHHTTCTTTTCEEEEEEEECEECSEEEEEEEECCSSCC
T ss_pred ECCccccCCCCcchHHHhccCCCceEEEEEEEEEEEECCcccEEEEEecCCHH
Confidence 98877788899999999999999999999999999999988777666665543
No 29
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Probab=98.58 E-value=5e-08 Score=96.35 Aligned_cols=156 Identities=14% Similarity=0.124 Sum_probs=97.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCC--cccCCCeEEEEcCC---CCCeEEEeCCCCEEEEeCCCcH
Q 012299 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGCIL 191 (466)
Q Consensus 117 p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~--~~p~~~gVvIdl~~---ln~I~~id~~~~~v~veaGv~l 191 (466)
+--+++|+|.+|+.++++.. +.+..+.||||++.-. ......+++||+++ |+.| +.+ ++.++++||+++
T Consensus 5 ~~~~~~P~s~~ea~~ll~~~---~~~~~ilaGGT~ll~~~~~~~~~~~~lIdl~~i~eL~~i-~~~--~~~l~iGA~~tl 78 (287)
T 1ffv_C 5 RFEYHAPKSVGEAVALLGQL---GSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGI-REE--GSTVVIGAMTVE 78 (287)
T ss_dssp CCEEECCSSHHHHHHHHHHH---GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCE-EEE--TTEEEEETTCBH
T ss_pred cceEECCCCHHHHHHHHHhc---CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcce-Eec--CCEEEEccCCcH
Confidence 34589999999999999764 3578999999997321 00012479999985 6676 443 456999999999
Q ss_pred HHHHHH-HHhCCCC-c------ccCCCCCCCceecCCcCCCccccCccccccccccEE----EEEEEecCCceEeccCCc
Q 012299 192 ENLVSF-LDDHGFI-M------PLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLANGDVIDMLGTL 259 (466)
Q Consensus 192 ~~L~~~-l~~~Gl~-l------p~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~----~levVl~dG~i~~~~~~~ 259 (466)
.+|.+. +.++++. + --.+...+.+||||+|++|++. +.+...++ .+++..++| ..+....
T Consensus 79 ~~l~~~~~~~~~~~~L~~a~~~~a~~qiRN~gTvGGni~~~~~~------~D~~~~l~Al~A~v~~~~~~G-~r~i~~~- 150 (287)
T 1ffv_C 79 NDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPG------NDHPALSIAVEAHFVLEGPNG-RRTVPAD- 150 (287)
T ss_dssp HHHHHCHHHHHHCHHHHHHGGGSSCTTGGGTCBHHHHHHTCCTT------CSHHHHHHHTTCEEEEEETTE-EEEEEST-
T ss_pred HHHhhChHHHHHhHHHHHHHHHhCCHHHhcceechhhhccCCCc------HHHHHHHHHcCcEEEEEcCCc-eEEEEHH-
Confidence 999963 4344332 1 1123333468999999999752 33333333 588888998 3333221
Q ss_pred ccCCCCCchhhhhhcCCCCceEEEEEEEEccCC
Q 012299 260 RKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 292 (466)
Q Consensus 260 ~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~ 292 (466)
.--.||.-..+ . .| -|||+++|.+.+.
T Consensus 151 -df~~g~~~t~l--~-~~--eii~~i~ip~~~~ 177 (287)
T 1ffv_C 151 -GFFLGTYMTLL--E-EN--EVMVEIRVPAFAQ 177 (287)
T ss_dssp -TTEEETTEESC--C-TT--CEEEEEEEECCCT
T ss_pred -HHhcCcccccC--C-CC--CEEEEEEecCCCC
Confidence 01112210000 0 12 4899999987653
No 30
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*
Probab=97.92 E-value=1.9e-05 Score=78.52 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=84.0
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCC-----CCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEe
Q 012299 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV-----GGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (466)
Q Consensus 112 ~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~-----g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~ve 186 (466)
.+++.+..+++|+|.+|+.++++.. . ...+.+|||++. +.. ...++||++++..+..+..+++.++++
T Consensus 5 ~~~g~~~~y~~P~sl~ea~~ll~~~---~-~a~~laGGT~l~~~~k~~~~---~~~~lIdl~~i~eL~~I~~~~~~l~IG 77 (305)
T 3nvz_B 5 RFEGERVTWIQASTLKELLDLKAQH---P-EAKLVVGNTEIGIEMKFKNQ---LFPMIICPAWIPELNAVEHGPEGISFG 77 (305)
T ss_dssp EEECSSCEEEECCSHHHHHHHHHHC---T-TCEECSSCTTHHHHHHHSCC---CCSEEEECTTCGGGGCEEECSSEEEEE
T ss_pred EecCCCeEEEccCCHHHHHHHHHhC---C-CCEEEECccHHHHHHhcCCC---CCCEEEECCCChhhcceEECCCeEEEc
Confidence 3567778899999999999988543 1 247789999984 222 236899999754333333345679999
Q ss_pred CCCcHHHHHHHHHhC-------------CC----CcccCCCCCCCceecCCcCCCccccCccccccccccEE----EEEE
Q 012299 187 AGCILENLVSFLDDH-------------GF----IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEA 245 (466)
Q Consensus 187 aGv~l~~L~~~l~~~-------------Gl----~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~----~lev 245 (466)
|++++.++.+.+.++ .+ ..--+|...+.+||||+|+++... +.+.--++ .+++
T Consensus 78 A~vt~~~l~~~~~~~~~~~p~~~~~~~p~L~~a~~~ia~~qiRN~aTiGGNl~~a~p~------sD~~~~L~AldA~v~l 151 (305)
T 3nvz_B 78 AACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPI------SDLNPVFMASGTKLTI 151 (305)
T ss_dssp TTCBHHHHHHHHHHHHHHSCGGGCHHHHHHHHHHTTSSCHHHHTTCBHHHHHHHCCTT------CSSHHHHHHHTCEEEE
T ss_pred cCCcHHHHHHHHHhhhcccchhhhhhhHHHHHHHHHhCCHHHhCeeechheeCCCCCc------hHHHHHHHHcCCEEEE
Confidence 999999999886532 00 011123334678999999987542 33322222 4667
Q ss_pred EecCCc
Q 012299 246 VLANGD 251 (466)
Q Consensus 246 Vl~dG~ 251 (466)
..++|+
T Consensus 152 ~~~~G~ 157 (305)
T 3nvz_B 152 VSRGTR 157 (305)
T ss_dssp EETTEE
T ss_pred EcCCCc
Confidence 778884
No 31
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.91 E-value=3.8e-06 Score=88.15 Aligned_cols=123 Identities=13% Similarity=0.108 Sum_probs=83.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCC--cccCCCeEEEEcCC---CCCeEEEeCCCCEEEEeCCC
Q 012299 115 GSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGC 189 (466)
Q Consensus 115 ~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~--~~p~~~gVvIdl~~---ln~I~~id~~~~~v~veaGv 189 (466)
|....+++|+|.+|+.++++... +..+.||||++.-. ......+++||+++ |+.| +.+ ++.++++||+
T Consensus 175 G~a~~y~~P~sl~ea~~ll~~~~----~a~ilaGGT~L~~~~k~~~~~~~~lIdl~~i~eL~~I-~~~--~~~l~IGA~v 247 (462)
T 2w3s_A 175 GQTAPAFLPETSDALADWYLAHP----EATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQI-RET--PDGYGIGAGV 247 (462)
T ss_dssp ----CCBCCSSHHHHHHHHHHCT----TCEEESSCTTTTHHHHTSCCCCCSEEECTTCGGGSCE-EEE--TTEEEEETTC
T ss_pred CCccEEEecCCHHHHHHHHhhCC----CCEEEeCCchhhhhhhccCCCCCEEEEcCCChhhCcE-EEc--CCEEEEccCC
Confidence 44456889999999999987532 46778999998421 00112368999998 6777 454 4469999999
Q ss_pred cHHHHHHHHHhCCCC-c----c--cCCCCCCCceecCCcCCCccccCccccccccccEE----EEEEEecCCc
Q 012299 190 ILENLVSFLDDHGFI-M----P--LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLANGD 251 (466)
Q Consensus 190 ~l~~L~~~l~~~Gl~-l----p--~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~----~levVl~dG~ 251 (466)
++.+|.+.+. ..+. | . -++...+.+||||+|++++. .+.+...++ .+++..++|+
T Consensus 248 tl~~l~~~l~-~~~p~L~~a~~~ia~~qIRN~gTvGGNl~~~sp------~sD~~~~L~ALdA~v~l~~~~G~ 313 (462)
T 2w3s_A 248 TIAALRAFAE-GPHPALAGLLRRFASEQVRQVATIGGNIANGSP------IGDGPPALIAMGASLTLRRGQER 313 (462)
T ss_dssp BHHHHHHHHT-TTCHHHHHHHTTSSCHHHHTTCBHHHHHHHTCT------TCSHHHHHHHTTCEEEEEBTTBC
T ss_pred cHHHHHHHHH-HHhHHHHHHHHHhCChhheeeEEcccccccCCC------cchHHHHHHHcCCEEEEEeCCce
Confidence 9999998843 3332 1 1 12333456799999999874 355666666 7788888883
No 32
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Probab=97.83 E-value=1.3e-05 Score=79.12 Aligned_cols=147 Identities=17% Similarity=0.180 Sum_probs=91.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCC--cccCCCeEEEEcCC---CCCeEEEeCCCCEEEEeCCCcH
Q 012299 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGCIL 191 (466)
Q Consensus 117 p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~--~~p~~~gVvIdl~~---ln~I~~id~~~~~v~veaGv~l 191 (466)
+--+++|+|.+|+.++++.. +-+..+.||||++.-. ..-...+++||+++ |+.| +. +++.++++|++++
T Consensus 5 ~~~~~~P~sl~ea~~ll~~~---~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I-~~--~~~~l~IGA~~t~ 78 (288)
T 1n62_C 5 SFDYHRPKSIADAVALLTKL---GEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGI-RE--EGTDVVIGAMTTQ 78 (288)
T ss_dssp CCEEECCSSHHHHHHHHHHH---GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGSCE-EE--ETTEEEEETTCBH
T ss_pred ceEEECcCCHHHHHHHHHhc---CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcce-Ee--cCCEEEEccCCcH
Confidence 34588999999999998643 3457888999996321 00013379999987 5665 44 4457999999999
Q ss_pred HHHHH--HHHhCCCC-cc------cCCCCCCCceecCCcCCCccccCccccccccccEE-------EEEEEecCCceEec
Q 012299 192 ENLVS--FLDDHGFI-MP------LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL-------GLEAVLANGDVIDM 255 (466)
Q Consensus 192 ~~L~~--~l~~~Gl~-lp------~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~-------~levVl~dG~i~~~ 255 (466)
.+|.+ .+.++ +. |. -+|...+.+||||+|+++.. ..|.+. .+++..++|+ .+.
T Consensus 79 ~~l~~~~~~~~~-~p~L~~a~~~ia~~qiRN~gTiGGnl~~a~p---------~sD~~~~L~Al~A~v~l~~~~G~-r~v 147 (288)
T 1n62_C 79 HALIGSDFLAAK-LPIIRETSLLIADPQIRYMGTIGGNAANGDP---------GNDMPALMQCLGAAYELTGPEGA-RIV 147 (288)
T ss_dssp HHHHHCHHHHHH-CHHHHHHHTTSSCHHHHHHCBHHHHHHSCCT---------TCSHHHHHHHHTCEEEEEETTEE-EEE
T ss_pred HHHhcChHHHHH-HHHHHHHHHHhCCHHHHccccccchhccCCC---------chHHHHHHHHhCcEEEEEeCCcc-EEE
Confidence 99995 45442 21 11 12223346799999998732 344433 5667778884 222
Q ss_pred cCCcccCCCCCchhhhhhcCC----CCceEEEEEEEEccC
Q 012299 256 LGTLRKDNTGYDLKHLFIGSE----GSLGIVTKVSIHTPP 291 (466)
Q Consensus 256 ~~~~~k~~~G~dL~~l~~Gs~----GtlGIIT~v~l~l~p 291 (466)
.+.+++.|-. ..--|||++.+...+
T Consensus 148 -----------~~~df~~g~~~t~l~~~eil~~i~ip~~~ 176 (288)
T 1n62_C 148 -----------AARDYYQGAYFTAIEPGELLTAIRIPVPP 176 (288)
T ss_dssp -----------EHHHHEEETTEESCCTTCEEEEEEEECCC
T ss_pred -----------EHHHHhcCcccccCCCCCEEEEEEeCCCC
Confidence 1122333321 112479999997655
No 33
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3
Probab=97.37 E-value=0.00013 Score=71.79 Aligned_cols=149 Identities=12% Similarity=0.141 Sum_probs=90.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCc--ccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHH
Q 012299 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENL 194 (466)
Q Consensus 117 p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~--~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L 194 (466)
+--+++|+|.+|+.++++. . -...+.+|||++.-.. .......+||++++..+..+..+++.++++|++++.+|
T Consensus 5 ~f~y~~P~sl~ea~~ll~~-~---~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt~~~l 80 (288)
T 1t3q_C 5 AFSYRAPASLQEVIQVLAD-D---PDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAGILSVGAMVTHFRN 80 (288)
T ss_dssp CCEEECCSSHHHHHHHHHH-C---TTCEEESSCTTHHHHHHTTCCCCSEEEECTTCGGGGCEEEETTEEEEETTCBHHHH
T ss_pred CceEECCCCHHHHHHHHhh-C---CCCEEEeCchhHHHHHhcCCCCCCEEEECCCChhhcCeEEcCCEEEEcCCCcHHHH
Confidence 3458899999999999864 1 2356679999963110 00123689999985433223334567999999999999
Q ss_pred HH--HHHhCCC-------CcccCCCCCCCceecCCcCCCccccCccccccccccEE-------EEEEEecCCceEeccCC
Q 012299 195 VS--FLDDHGF-------IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL-------GLEAVLANGDVIDMLGT 258 (466)
Q Consensus 195 ~~--~l~~~Gl-------~lp~~pgs~~~~tvGG~ia~na~G~~~~~yG~~~d~V~-------~levVl~dG~i~~~~~~ 258 (466)
.+ .+.++-- .+. +|...+.+|+||+|++... ..|... .+++..++|+.. .
T Consensus 81 ~~~~~~~~~~p~L~~a~~~ia-s~qiRN~aTiGGNi~~a~p---------~sD~~~~L~Al~A~v~l~~~~g~R~-v--- 146 (288)
T 1t3q_C 81 KTDPTVAKCVPILPKVLAHVA-HQAVRNRGTLGGSLAHADA---------GAEMPFLMATLGATMYIASSAGVRS-V--- 146 (288)
T ss_dssp HHCHHHHHHCTHHHHHHTTSS-CHHHHTTCBHHHHHHHTCT---------TCHHHHHHHHTTCEEEEEETTEEEE-E---
T ss_pred hcCHHHHHHHHHHHHHHHHhC-CHHHHcceechhhcccCCC---------cHHHHHHHHHcCcEEEEEcCCceEE-E---
Confidence 96 3433211 121 2444577899999985532 345444 667777887422 1
Q ss_pred cccCCCCCchhhhhhcCC----CCceEEEEEEEEccC
Q 012299 259 LRKDNTGYDLKHLFIGSE----GSLGIVTKVSIHTPP 291 (466)
Q Consensus 259 ~~k~~~G~dL~~l~~Gs~----GtlGIIT~v~l~l~p 291 (466)
.+.++|.|-. ..--|||++.+...+
T Consensus 147 --------p~~dF~~g~~~t~L~~~Eil~~I~iP~~~ 175 (288)
T 1t3q_C 147 --------SATDFMKGHYFTDLEAGEVLVRVEIPIPA 175 (288)
T ss_dssp --------EHHHHEEETTEESCCTTCEEEEEEEECCS
T ss_pred --------EHHHHhcCcccccCCCCCEEEEEEecCCC
Confidence 1223333321 111479999996543
No 34
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=96.65 E-value=0.00039 Score=68.68 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=66.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCc--ccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHHHHH
Q 012299 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (466)
Q Consensus 118 ~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~--~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~~L~ 195 (466)
--+++|+|.+|+.++++...+ ....+.+|||++.-.- .......+||++++..+..|..+++.++++|++++.++.
T Consensus 4 f~y~~P~sl~ea~~ll~~~~~--~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt~~~l~ 81 (296)
T 3hrd_C 4 FEFFAPKTLEEAKGLLHQYKD--VPPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYIRVEENTIHIGALSTFTQIE 81 (296)
T ss_dssp CEEECCSSHHHHHHHHHHTTT--SCCEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEECSSEEEEETTCBHHHHH
T ss_pred eeEeCCCCHHHHHHHHHhCCC--CCeEEEECCcHHHHHhhcCCCCCCeEEEcccChhhcceEEcCCeEEEccCCcHHHHH
Confidence 457899999999988754321 0356679999973210 011346899999864433344456789999999999997
Q ss_pred HH--HHhC-------CCCcccCCCCCCCceecCCcCCC
Q 012299 196 SF--LDDH-------GFIMPLDLGAKGSCQIGGNVSTN 224 (466)
Q Consensus 196 ~~--l~~~-------Gl~lp~~pgs~~~~tvGG~ia~n 224 (466)
+. +.++ =..+. +|...+.+||||+|++.
T Consensus 82 ~~~~~~~~~p~L~~a~~~ia-s~qIRN~aTiGGNi~~a 118 (296)
T 3hrd_C 82 NHPFIRSHVRALYKAASQVG-SPQIRNLGTIGGNLSTS 118 (296)
T ss_dssp HCHHHHHHCHHHHHHHHTSS-CHHHHHHCBHHHHHHHT
T ss_pred hChhhhhHhHHHHHHHHHhC-CHHHhcceehhhhhccC
Confidence 52 2211 01111 23344678999999864
No 35
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B*
Probab=95.73 E-value=0.0023 Score=64.01 Aligned_cols=94 Identities=20% Similarity=0.335 Sum_probs=64.2
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCC-----CCcccCCCeEEEEcCCC---CCeEEEeCCCCEEEEeCCCc
Q 012299 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV-----GGSVPVFDEVIINMGSM---NNIITFDKGSGVLVCEAGCI 190 (466)
Q Consensus 119 ~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~-----g~~~p~~~gVvIdl~~l---n~I~~id~~~~~v~veaGv~ 190 (466)
-+++|+|.+|..++++. . .-.+.+|||++. +.. ....+||++++ +.| +.++ ++.++++|+++
T Consensus 8 ~y~~P~sl~ea~~ll~~---~--~a~~lAGGT~l~~~~k~~~~---~p~~lIdi~~i~eL~~I-~~~~-~~~l~IGA~vt 77 (324)
T 1rm6_B 8 RTHRPATLADAVNALAA---E--ATLPLGAGTDLLPNLRRGLG---HPAALVDLTGIDGLATI-STLA-DGSLRIGAGAT 77 (324)
T ss_dssp EEECCSSHHHHHHHTTS---T--TEEEESSCTTHHHHHHTTSC---CCSEEEECTTSTTTTCE-EECT-TSCEEEETTCB
T ss_pred EEEccCCHHHHHHHHhC---C--CCEEEECchhHHHHHhccCC---CCCEEEECCCChhhcce-EECC-CCeEEEccCCc
Confidence 48899999999998862 2 366779999973 222 33789999986 555 3332 33689999999
Q ss_pred HHHHHHH--HHhC-------CCCcccCCCCCCCceecCCcCC
Q 012299 191 LENLVSF--LDDH-------GFIMPLDLGAKGSCQIGGNVST 223 (466)
Q Consensus 191 l~~L~~~--l~~~-------Gl~lp~~pgs~~~~tvGG~ia~ 223 (466)
+.+|.+. +.++ =..+. +|...+.+||||+|++
T Consensus 78 ~~~l~~~~~~~~~~p~L~~a~~~ia-s~qIRN~aTiGGNl~~ 118 (324)
T 1rm6_B 78 LEAIAEHDAIRTTWPALAQAAESVA-GPTHRAAATLGGNLCQ 118 (324)
T ss_dssp HHHHHHCHHHHHHSHHHHHHHHHSS-CHHHHHHCBHHHHHTC
T ss_pred HHHHHhChHHHHHHHHHHHHHHHhC-CHHHcceeEeeeeccc
Confidence 9999874 2221 00111 3444577899999975
No 36
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=95.20 E-value=0.019 Score=67.32 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=70.6
Q ss_pred cCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCCCCcc--cCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCc
Q 012299 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCI 190 (466)
Q Consensus 113 ~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~g~~~--p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~ 190 (466)
+.+.+.-+++|.|.+|+.++++... .-.+.+|||++.-.-. -....++||++++..+..|..++..++++|+++
T Consensus 229 ~~~~~~~~~~P~sl~ea~~ll~~~~----~a~lvaGgT~l~~~~k~~~~~~~~lIdl~~i~EL~~I~~~~~~l~IGA~vt 304 (1332)
T 3unc_A 229 FEGERVTWIQASTLKELLDLKAQHP----EAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACA 304 (1332)
T ss_dssp EECSSCEEEECCSHHHHHHHHHHCT----TCEECSSCTTHHHHHHHSCCCCSEEEECTTCGGGGCEEECSSEEEEETTCB
T ss_pred ecCCceEEEccCCHHHHHHHHhhCC----CCEEEEeCcHHHHHhhcCCCCCCeEEEcCCCHHhCceEEeCCEEEEEecCh
Confidence 3445667999999999999876421 2356799998731100 012357999998553333334456799999999
Q ss_pred HHHHHHHHHhCC-------------C-----CcccCCCCCCCceecCCcCCCc
Q 012299 191 LENLVSFLDDHG-------------F-----IMPLDLGAKGSCQIGGNVSTNA 225 (466)
Q Consensus 191 l~~L~~~l~~~G-------------l-----~lp~~pgs~~~~tvGG~ia~na 225 (466)
+.+|.+.+.+.= + .+. ++...+.+||||+|++..
T Consensus 305 l~~l~~~l~~~~~~~~~~~~~~~p~L~~a~~~ia-s~qIRN~aTiGGNI~~as 356 (1332)
T 3unc_A 305 LSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFA-GKQVKSVASLGGNIITAS 356 (1332)
T ss_dssp HHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHTSS-CHHHHHHCBHHHHHHHCC
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHHHHHHhC-CHHHhceeeccceecccC
Confidence 999998764320 0 111 233345689999998865
No 37
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=87.09 E-value=0.14 Score=60.27 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=67.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCeEEEcCCCCCCC--CCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEeCCCcHH
Q 012299 115 GSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV--GGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILE 192 (466)
Q Consensus 115 ~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~~~GgGt~l~--g~~~p~~~gVvIdl~~ln~I~~id~~~~~v~veaGv~l~ 192 (466)
+.-...++|.|.+|+.++...--+ .+ ...|||.+. -......-.++||+.+...+..+...+..++++|+|++.
T Consensus 238 g~~~~w~~P~tl~el~~l~~~~p~--a~--lvaGnT~~gl~~~~~~~~~~~~I~~~~v~EL~~i~~~~~~l~IGA~vtls 313 (1335)
T 3zyv_A 238 GERTTWIAPGTLNDLLELKMKHPS--AP--LVIGNTYLGLHMKFTDVSYPIIISPARILELFVVTNTKQGLTLGTGLSLT 313 (1335)
T ss_dssp CSSCEEEECSSHHHHHHHHHHCTT--SC--BCSSCTTHHHHHC--CCCCSEEECCTTCGGGSCEECCTTEEEEETTCBHH
T ss_pred CCCceEecCCCHHHHHHHHHHCCC--Ce--EEEecccceeeEeecCCCCCeEEEcCcchhHheEEecCCEEEEcccCcHH
Confidence 333568899999999998654322 22 346777751 001111235899998755544455566779999999999
Q ss_pred HHHHHHHhCCCCccc-----------------CCCCCCCceecCCcCCC
Q 012299 193 NLVSFLDDHGFIMPL-----------------DLGAKGSCQIGGNVSTN 224 (466)
Q Consensus 193 ~L~~~l~~~Gl~lp~-----------------~pgs~~~~tvGG~ia~n 224 (466)
++.+.|.+.--.+|. .+...+.+||||+|++.
T Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~fAs~qIRN~aTigGNI~~a 362 (1335)
T 3zyv_A 314 QVKNVLSDVVSRLPKEKTQIYCALLKQLKTLAGQQIRNVASLGGHIISR 362 (1335)
T ss_dssp HHHHHHHHHHTTSCTTTCTTHHHHHHHHTTSSCHHHHHHCBHHHHHHTC
T ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcchhhcCcccccCceecc
Confidence 999988642111110 12234668999999865
No 38
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=81.76 E-value=1.1 Score=45.92 Aligned_cols=43 Identities=14% Similarity=-0.018 Sum_probs=35.5
Q ss_pred CceEEEEEEccchHHHHHHHHHHHHhhcCCcE-----eeEEeecCCCCC
Q 012299 418 AVYKYDLSLPVEKMYDLVEKMRQRLGKAAYNF-----IDYEILFPVQQS 461 (466)
Q Consensus 418 ~~~~~Dv~VP~~~l~e~~~~~~~~~~~~g~~~-----~~~GH~~~~~~~ 461 (466)
..+.+|++||+++++++++++++++++ ++.. +.|||+++..-+
T Consensus 289 ~~~~~e~avP~e~~~~~l~~l~~~~~~-~~~~~~~v~~r~~~~~~~~Ls 336 (422)
T 2vfr_A 289 AELQSEYLMPREHALAALHAMDAIRET-LAPVLQTCEIRTVAADAQWLS 336 (422)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHTHHH-HGGGEEEEEEEEECCBCSTTC
T ss_pred cEEEEEEEEEHHHHHHHHHHHHHHHHh-CCCceeeEEEEeecCCccccC
Confidence 456679999999999999999999998 6555 679999865433
No 39
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=41.93 E-value=37 Score=28.53 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=34.4
Q ss_pred hcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeE-EEcCCCC
Q 012299 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGNT 150 (466)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv-~~~GgGt 150 (466)
...| ...|.+..|++..|++|+.++.+.|.+.|+|. .++-.|.
T Consensus 40 l~~W--~~~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~I~DAG~ 83 (123)
T 1rzw_A 40 RRKW--LDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQDAGL 83 (123)
T ss_dssp HHHT--GGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred HHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 3445 44678999999999999999999999999996 4555553
No 40
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=41.90 E-value=46 Score=27.71 Aligned_cols=45 Identities=13% Similarity=0.230 Sum_probs=35.6
Q ss_pred HhhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEE-EcCCC
Q 012299 103 LAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVV-PQGGN 149 (466)
Q Consensus 103 ~~y~~d~~~~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~-~~GgG 149 (466)
..+...| ...+.|..|++..+++|+.++.+.|.+.|+|.. ++=.|
T Consensus 43 ~~~~~~W--~~~g~~KiVlk~~~e~el~~l~~~a~~~gl~~~~i~DAG 88 (120)
T 1xty_A 43 KEWLNEW--LHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAG 88 (120)
T ss_dssp HHHHHHH--HHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred HHHHHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4455555 467889999999999999999999999999963 44444
No 41
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=39.83 E-value=52 Score=26.35 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=35.7
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCC-CcceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPK-LSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~-p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+|..+| ..+|-|.++.+-..+. -.....+++.|.+.+++.+|+..+
T Consensus 21 ~~L~~~F----~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~l 68 (110)
T 3s8s_A 21 TFLKDMC----RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNL 68 (110)
T ss_dssp HHHHHHH----TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 3676666 4578899999877666 335567899999999999888765
No 42
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=35.07 E-value=38 Score=28.33 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=31.7
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEE-EcCCC
Q 012299 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVV-PQGGN 149 (466)
Q Consensus 112 ~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv~-~~GgG 149 (466)
...+.|..|++..+++|+.++.+.|.+.|+|.. ++=.|
T Consensus 51 ~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i~DAG 89 (121)
T 1wn2_A 51 FREGQKKVVVKVESEEELFKLKAEAEKLGLPNALIRDAG 89 (121)
T ss_dssp HHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 467889999999999999999999999999863 34443
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=35.06 E-value=73 Score=24.60 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=34.5
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+|..+|. .+|-|.++.+...+.-.....+++.|.+.+++.+++..+
T Consensus 30 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 76 (105)
T 2dnh_A 30 EDVLRLFQ----PFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHAL 76 (105)
T ss_dssp HHHHHHHT----TTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHH
Confidence 35666653 456788988876664444667899999999999887765
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.34 E-value=77 Score=24.28 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=34.4
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+|..+|. .+|-|.++.+...+.-.....+++.|.+.+++.+++..+
T Consensus 32 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 78 (100)
T 2do4_A 32 EELEEICK----AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 78 (100)
T ss_dssp HHHHHHHT----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHh
Confidence 35666653 467788888876663345567899999999998887665
No 45
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=34.28 E-value=72 Score=24.76 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=35.1
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
-+|..+|. .+|-|.++.+...+.......+++.|.+.+++.+++..+
T Consensus 44 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 90 (107)
T 3ulh_A 44 ADIQELFA----EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 90 (107)
T ss_dssp HHHHHHHH----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 35666653 467788988877764445668899999999999888765
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=32.10 E-value=82 Score=24.53 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=41.0
Q ss_pred cCCceEeccCCcccCCCCCchhhhhhcCCCCceEEEEEEEEccCCC-cceeEEEEEcCCHHHHHHHHHHH
Q 012299 248 ANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 248 ~dG~i~~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+|+-+-++. +..+.+--+|..+|. .+|-|.++.+-..+.. .....+++.|.+.+++.+|+..+
T Consensus 17 ~~gt~lfV~n-Lp~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 17 FQGTNLIVNY-LPQNMTQDELRSLFS----SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp CCCSEEEEES-CCTTCCHHHHHHHHH----TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHH----hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh
Confidence 4555444432 223334446777763 4577888887655443 34457889999999999888765
No 47
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=31.83 E-value=70 Score=24.15 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=34.8
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
-+|..+|. .+|-|.++.+...+.......+++.|.+.+++.+++..+
T Consensus 31 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 31 EILYELFL----QAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp HHHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 36666663 367788988876665445668899999999998887765
No 48
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.37 E-value=93 Score=24.40 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=34.8
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+|..+| ..+|-|.++.+...+.-.....+++.|.+.+++.+++..+
T Consensus 30 ~~l~~~f----~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 76 (114)
T 2do0_A 30 KKLKEVF----SMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 76 (114)
T ss_dssp HHHHHHH----TTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 3666665 3467788888876654445667899999999999988766
No 49
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=29.65 E-value=87 Score=24.79 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=30.1
Q ss_pred CCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 277 GSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 277 GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
+.+|-|+++.+-..+.......+++.|.+.+++.+|+..+
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~l 88 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDL 88 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHH
Confidence 3567799998854433345677899999999999988766
No 50
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=27.89 E-value=69 Score=26.45 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=32.2
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeE-EEcCCCC
Q 012299 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGNT 150 (466)
Q Consensus 112 ~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv-~~~GgGt 150 (466)
...+.|..|++..+++|+.++.+.|.+.|+|. .++=.|+
T Consensus 47 ~~~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~v~DAG~ 86 (117)
T 1rlk_A 47 YDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDRGY 86 (117)
T ss_dssp HHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEECCCS
T ss_pred HHCCCeEEEEecCCHHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 36688999999999999999999999999986 3444443
No 51
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.40 E-value=1.2e+02 Score=23.22 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=33.2
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
-+|..+| ..+|-|.++.+... .-.....+++.|.+.+++.+++..+
T Consensus 30 ~~l~~~F----~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l 75 (103)
T 2d9p_A 30 ERLRKAF----SPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEM 75 (103)
T ss_dssp HHHHHTT----TTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHh
Confidence 3566655 34677888888655 3344567899999999999888765
No 52
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=26.38 E-value=99 Score=24.55 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=40.4
Q ss_pred chhhhhhcCCCCceEEEEEEEEccCC--CcceeEEEEEcCCHHHHHHHHHHHHHh-cCCcceeEEecch
Q 012299 267 DLKHLFIGSEGSLGIVTKVSIHTPPK--LSSVNLAFLACKDYFSCQKLLREAKRK-LGEILSAFEFLDN 332 (466)
Q Consensus 267 dL~~l~~Gs~GtlGIIT~v~l~l~p~--p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~E~~D~ 332 (466)
||...| +.+|-|+++.+-..|. +.....+++.|.+.+++.+|+..+-.. +...+-.+++.+.
T Consensus 29 dl~~~f----~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 29 ETKEEC----EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHG----GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHH----HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 555554 4678899998865543 234567889999999999998876321 2223345555553
No 53
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=24.62 E-value=77 Score=24.13 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=30.6
Q ss_pred CCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccc
Q 012299 180 SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGG 227 (466)
Q Consensus 180 ~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G 227 (466)
++...|.+.+.+.++++.+ |+.+|. ...-|+||++....|.
T Consensus 8 dg~~~v~G~~~l~dl~~~l---~~~l~~----~~~~Tl~G~i~~~lg~ 48 (83)
T 3llb_A 8 SGDFIVKALTPVDAFNDFF---GSEFSD----EEFDTVGGLVMSAFGH 48 (83)
T ss_dssp TSCEEEETTCBHHHHHHHH---CCCCCT----TTCSBHHHHHHHHHSS
T ss_pred CCEEEEEccCCHHHHHHHh---CCCCCC----CCCcCHHHHHHHHhCc
Confidence 4567899999999999886 455652 3456899999876554
No 54
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.60 E-value=1.4e+02 Score=22.23 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=33.8
Q ss_pred chhhhhhcCCCCceEEEEEEEEccCCC-cceeEEEEEcCCHHHHHHHHHHH
Q 012299 267 DLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 267 dL~~l~~Gs~GtlGIIT~v~l~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
+|..+|. .+|-|.++.+...+.. .....+++.|.+.+++.+++..+
T Consensus 31 ~l~~~f~----~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 31 DLREVFS----KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp HHHHHHH----TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 5666663 3567888888766553 34567899999999999887765
No 55
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.53 E-value=1.4e+02 Score=23.29 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=33.8
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+|..+| ..+|-|..+.+...+.......+++.|.+.+++.+++..+
T Consensus 40 ~~l~~~F----~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 86 (114)
T 1x5o_A 40 QELENML----KPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 86 (114)
T ss_dssp HHHHHTT----TTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3565555 3467788888866663344567899999999998887765
No 56
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=24.46 E-value=71 Score=26.28 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=29.0
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeE
Q 012299 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV 143 (466)
Q Consensus 112 ~~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv 143 (466)
...+.|..|++..+++|+.++.+.|.+.|+|.
T Consensus 45 ~~~g~~kivlk~~~e~~l~~l~~~a~~~gl~~ 76 (115)
T 2zv3_A 45 LREGQKKVVVKVNSEKELIDIYNKARSEGLPC 76 (115)
T ss_dssp HHTTCCEEEEEESSHHHHHHHHHHHHHHTCCE
T ss_pred HHCCCeEEEEecCCHHHHHHHHHHHHHcCCCE
Confidence 35788999999999999999999999999985
No 57
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=23.47 E-value=89 Score=23.65 Aligned_cols=41 Identities=10% Similarity=0.253 Sum_probs=30.7
Q ss_pred CCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccc
Q 012299 180 SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGG 227 (466)
Q Consensus 180 ~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G 227 (466)
++...|.+.+.+.++++.+ |+.+|. ...-|+||++....|.
T Consensus 8 dg~~~v~g~~~l~dl~~~l---~~~l~~----~~~~Tl~G~i~~~lg~ 48 (81)
T 3lae_A 8 DGSMIIDGSANLRDLNKMF---NWELDT----EDARTFNGLILEHLEE 48 (81)
T ss_dssp TSCEEEETTCBHHHHHHHH---CCCCCC----SSCSBHHHHHHHHCSS
T ss_pred CCEEEEEeeCCHHHHHHHh---CCCCCC----CCCccHHHHHHHHhCC
Confidence 4557899999999999886 455652 3456899999876654
No 58
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=22.49 E-value=75 Score=24.66 Aligned_cols=41 Identities=7% Similarity=0.171 Sum_probs=30.8
Q ss_pred CCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccc
Q 012299 180 SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGG 227 (466)
Q Consensus 180 ~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G 227 (466)
++...|.+.+.+.+|++.+ |+.+|- ...-|+||++....|.
T Consensus 15 dg~~~v~G~~~l~dl~~~l---~~~l~~----~~~~TlgG~i~~~lg~ 55 (93)
T 2r2z_A 15 DNEYLVQGRMLIDEFNEVF---ETDLHM----SDVDTMAGYLITALGT 55 (93)
T ss_dssp TTEEEEETTSBHHHHHHHH---TCCCCC----TTCCBHHHHHHHHHSS
T ss_pred CCEEEEECCCCHHHHHHHh---CCCCCC----CCcccHHHHHHHHhCC
Confidence 4568899999999999987 455652 2356899999875553
No 59
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=21.89 E-value=1e+02 Score=23.88 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=30.6
Q ss_pred CCEEEEeCCCcHHHHHHHHHhCCCCcccCCCCCCCceecCCcCCCccc
Q 012299 180 SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGG 227 (466)
Q Consensus 180 ~~~v~veaGv~l~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~ia~na~G 227 (466)
++...|.+-+.+.++++.+ |+.+|- ...-|+||++....|.
T Consensus 17 dg~~~v~G~~~l~dl~~~l---~~~l~~----~~~dTlgG~i~~~lg~ 57 (91)
T 2pli_A 17 SERWRIHAATEIEDINTFF---GTEYSS----EEADTIGGLVIQELGH 57 (91)
T ss_dssp TTEEEEETTCBHHHHHHHH---CCCCCC----SSCCBHHHHHHHHHSS
T ss_pred CCEEEEEcCCCHHHHHHHh---CCCCCC----CCCccHHHHHHHHhCC
Confidence 4567899999999999987 555652 2356899999875543
No 60
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=21.68 E-value=1.6e+02 Score=21.20 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=33.4
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCC-cceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+|..+| ..+|-|.++.+...+.. .....+++.|.+.+++.+++..+
T Consensus 16 ~~l~~~f----~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 16 ETLRNAF----KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp HHHHHHH----TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 3566665 34567888888666543 34567899999999998887765
No 61
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.42 E-value=1.2e+02 Score=23.34 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=33.0
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+|..+|... +|-|.++.+...+.-.....+++.|.+.+++.+++..+
T Consensus 24 ~~l~~~F~~~---~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 71 (104)
T 2dhg_A 24 GMLYEFFVKV---YPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTEC 71 (104)
T ss_dssp HHHHHHHHHH---CTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHHHHh---CCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHc
Confidence 3566666321 45578888766553334567899999999998887655
No 62
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.40 E-value=1.4e+02 Score=22.80 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=33.1
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+|..+|. .+|-|.++.+...+.. ....+++.|.+.+++.+++..+
T Consensus 30 ~~l~~~f~----~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l 75 (103)
T 2cq3_A 30 PDLRQMFG----QFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKL 75 (103)
T ss_dssp HHHHHHGG----GTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHh
Confidence 35666653 3577888887655443 4567899999999999887765
No 63
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=21.03 E-value=1.4e+02 Score=24.37 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=34.8
Q ss_pred chhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 267 dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
+|..+|. .+|-|.++.+...+.......+++.|.+.+++.+++..+
T Consensus 16 ~l~~~f~----~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l 61 (166)
T 3md3_A 16 ILKQYFQ----VGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTL 61 (166)
T ss_dssp HHHHHHG----GGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHc
Confidence 5666653 356788998877666556678999999999999988765
No 64
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=20.85 E-value=1.9e+02 Score=21.13 Aligned_cols=47 Identities=9% Similarity=0.219 Sum_probs=33.4
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCC-cceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
-+|..+|. .+|-|.++.+...+.. .....+++.|.+.+++.+++..+
T Consensus 21 ~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 68 (87)
T 3bs9_A 21 AAIAAAFA----PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 68 (87)
T ss_dssp HHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 35666653 4567888888665432 34567899999999999887765
No 65
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=20.74 E-value=1.6e+02 Score=22.53 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=33.7
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCC-cceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
-+|..+| ..+|-|.++.+...+.. .....+++.|.+.+++.+++..+
T Consensus 38 ~~l~~~f----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 85 (106)
T 1p27_B 38 EDIHDKF----AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 85 (106)
T ss_dssp HHHHHHH----GGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHH----hccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 3566665 34577888888665543 34567899999999999887765
No 66
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.70 E-value=1.7e+02 Score=21.76 Aligned_cols=47 Identities=15% Similarity=0.287 Sum_probs=33.5
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCC-cceeEEEEEcCCHHHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+|..+| ..+|-|.++.+...+.. .....+++.|.+.+++.+++..+
T Consensus 20 ~~l~~~f----~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 67 (95)
T 2dnz_A 20 DMLRGIF----EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 67 (95)
T ss_dssp HHHHHHH----TTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 3566665 34677888888665542 23457899999999999888765
No 67
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.48 E-value=1.3e+02 Score=23.67 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=33.2
Q ss_pred CchhhhhhcCCCCceEEEEEEEEccCCCcceeEEEEEcCCHHHHHHHHH
Q 012299 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLR 314 (466)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIT~v~l~l~p~p~~~~~~~~~~~~~~~~~~~~~ 314 (466)
-+|..+|- .+|-|+++.+...+.......+++.|.+.+++.+++.
T Consensus 26 ~~L~~~F~----~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 26 DDIKEWLE----DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp HHHHHHHH----TSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred HHHHHHHh----hcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 35666653 4678999998776654456678999999999888764
No 68
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=20.41 E-value=1.1e+02 Score=25.11 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=28.0
Q ss_pred cCCCccEEEEcCCHHHHHHHHHHHHhCCCeE
Q 012299 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAV 143 (466)
Q Consensus 113 ~~~~p~~vv~P~s~eeV~~ivk~a~~~~ipv 143 (466)
..+.|..+++..|++|+.++.+.|.+.|+|.
T Consensus 48 ~~g~~KVvlk~~~e~~l~~l~~~a~~~gl~~ 78 (117)
T 1q7s_A 48 YCGQPKVVVKAPDEETLIALLAHAKMLGLTV 78 (117)
T ss_dssp HTTCCEEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred hCCCeeEEEEcCCHHHHHHHHHHHHHCCCCE
Confidence 4567999999999999999999999999985
No 69
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=20.38 E-value=1.2e+02 Score=24.82 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=37.8
Q ss_pred CCceEEEEEEEEccCC-----CcceeEEEEEcCCHHHHHHHHHHHHHh-cCCcceeEEecch
Q 012299 277 GSLGIVTKVSIHTPPK-----LSSVNLAFLACKDYFSCQKLLREAKRK-LGEILSAFEFLDN 332 (466)
Q Consensus 277 GtlGIIT~v~l~l~p~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~E~~D~ 332 (466)
+.+|-|+++.+-..+. +.....+++.|.+.++|.+|+..+-.. ++..+-.+++.+.
T Consensus 47 ~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 47 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 5678899998855432 233467889999999999998877321 2233445666664
No 70
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=20.31 E-value=1.2e+02 Score=23.36 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCCCchhhhhhcCCCCceEEEEEEEEccC--CCcceeEEEEEcCCHHHHHHHHHHH
Q 012299 263 NTGYDLKHLFIGSEGSLGIVTKVSIHTPP--KLSSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 263 ~~G~dL~~l~~Gs~GtlGIIT~v~l~l~p--~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
.+..+|..+| +.+| |.++.+...+ .-.....+++.|.+.+++.+++ .+
T Consensus 31 ~t~~~l~~~F----~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l 80 (100)
T 2j76_E 31 VTEESIKEFF----RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL 80 (100)
T ss_dssp CSSSHHHHHS----CSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HT
T ss_pred CCHHHHHHHH----HhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hc
Confidence 3445676665 3468 8888775544 1223457889999999998887 54
No 71
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.13 E-value=1.6e+02 Score=23.01 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=28.7
Q ss_pred CCceEEEEEEEEccCCC----cceeEEEEEcCCHHHHHHHHHHH
Q 012299 277 GSLGIVTKVSIHTPPKL----SSVNLAFLACKDYFSCQKLLREA 316 (466)
Q Consensus 277 GtlGIIT~v~l~l~p~p----~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
..+|-|.++.+...+.. .....+++.|.+.+++.+|+..+
T Consensus 40 ~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l 83 (111)
T 2cpi_A 40 GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCV 83 (111)
T ss_dssp TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHH
T ss_pred hccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHh
Confidence 45678999888443321 22357899999999999988765
Done!