BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012300
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VSF|A Chain A, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|B Chain B, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|C Chain C, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|D Chain D, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|E Chain E, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|F Chain F, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSZ|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VT0|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT1|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT2|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
Length = 526
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 172/308 (55%), Gaps = 40/308 (12%)
Query: 137 GRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSS 196
G + DT G I AHGGG+L + Y+WYGEY+D +GV CY S
Sbjct: 45 GTQFKDTSGNVIHAHGGGML--KHGDYYYWYGEYRDDSNL-----------FLGVSCYRS 91
Query: 197 KDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDD-CNYTKAA 255
KD+ W+ G VL+ N +L N+ ERPKV+YN TG++VMWMH ++ NY +A
Sbjct: 92 KDLVNWEYRGEVLS---RNSAPELNHCNI-ERPKVMYNASTGEFVMWMHWENGINYGQAR 147
Query: 256 VGVAISDYPTGPFDYLYSKRPH-----------GFDSRDMTIFKDDDGVAYLVYSSEDNS 304
VA S P G F Y+ S RP G+ SRD +F D DG Y + ++ +N
Sbjct: 148 AAVAYSKTPDGKFTYIRSFRPMQDTGVMDHGLPGYMSRDCNVFVDTDGKGYFISAANENM 207
Query: 305 ELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAE 364
+LH+ LT DY +++++ ++ VGQ REAP L K G YY++TSGCTGW PN+A ++
Sbjct: 208 DLHLYELTPDYKNIASLKAKLFVGQQREAPCLIKRNGYYYLITSGCTGWNPNQAKYAYSK 267
Query: 365 SIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGL-YIFMADRWNPA---DLRE 420
+ W + N GN TT+ +Q T++IP+ G G Y++M DRW A + +
Sbjct: 268 DLASGWSQLYNL---GNS----TTYRSQPTFIIPVQGSSGTSYLYMGDRWAGAWGGKVND 320
Query: 421 SRYIWLPL 428
S+Y+WLPL
Sbjct: 321 SQYVWLPL 328
>pdb|3NQH|A Chain A, Crystal Structure Of A Glycosyl Hydrolase (Bt_2959) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.11 A
Resolution
Length = 441
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 138/320 (43%), Gaps = 42/320 (13%)
Query: 137 GRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSS 196
G W D G + AHG I+ E + Y+ +GEYK + K A G CYSS
Sbjct: 11 GIPWFDDRGEIVNAHGACIV--EENGRYYLFGEYK------SDKSNA----FPGFSCYSS 58
Query: 197 KDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAV 256
D+ WK E +VL + + L V ER KV TG+YV + H DD NY +
Sbjct: 59 DDLVNWKFERVVLPXQSSGI---LGPDRVGERVKVXKCPSTGEYVXYXHADDXNYKDPHI 115
Query: 257 GVAISDYPTGPFDY----LYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIG--- 309
G A G + LY +P D ++D DG YL+ LH G
Sbjct: 116 GYATCSTIAGEYKLHGPLLYEGKP--IRRWDXGTYQDTDGTGYLL--------LHGGIVY 165
Query: 310 PLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGP 369
L+ DY V + G H E+PA FK GTY+ + S T W N+ A S+ GP
Sbjct: 166 RLSKDYRTAEEKVVSGVGGSHGESPAXFKKDGTYFFLFSNLTSWEKNDNFYFTAPSVKGP 225
Query: 370 WEDMGNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWN-PADLRESRYIWLP 427
W G G+ T+ +Q+T+V PL G + F DRW+ P + Y+W P
Sbjct: 226 WTRQGLFAPEGS-----LTYNSQTTFVFPLKCGEDTIPXFXGDRWSYPHQASAATYVWXP 280
Query: 428 LIVRGPADRPLEYNFGFPLW 447
V G EY +P W
Sbjct: 281 XQVDGTKLSIPEY---WPSW 297
>pdb|3KST|A Chain A, Crystal Structure Of Endo-1,4-Beta-Xylanase (Np_811807.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
pdb|3KST|B Chain B, Crystal Structure Of Endo-1,4-Beta-Xylanase (Np_811807.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
Length = 306
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 32/245 (13%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC 249
G C+SS D+ WK EG L+A ++ T + P+V Y + K+ ++ ++
Sbjct: 49 GFACFSSDDLKNWKREGQALSATDSYGTWGFWA------PEVYYVESKKKFYLFYSAEE- 101
Query: 250 NYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSS-EDNSELHI 308
+ VA S P GPF + S D ++F DDDG YL + D + + +
Sbjct: 102 -----HICVATSTTPEGPFRQEVKQPIWSEKSIDTSLFIDDDGTPYLYFVRFTDGNVIWV 156
Query: 309 GPLTSDYLDV----------SNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEA 358
T D + + V +L G+ E P+L K G YY++ S
Sbjct: 157 AQXTDDLXSIKTETLNQCIKAEVSWELLQGKVAEGPSLLKKNGVYYLIYSANHYENKGYG 216
Query: 359 LVHA-AESIMGPWEDMG-NPCIGGNKVFRLTTFFAQSTYVIPLAGLPG--LYIFMADRWN 414
+ +A +++ GPW NP + G+ T + + P G YIF A W+
Sbjct: 217 VGYATSDTPXGPWVKYSKNPLLQGDAA----TGLVGTGHGAPFQCKDGSWKYIFHA-HWS 271
Query: 415 PADLR 419
A+++
Sbjct: 272 AAEIQ 276
>pdb|3QEF|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QEF|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 307
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 25/190 (13%)
Query: 193 CYSSKDMWTWKNEGIVLAAEE-TNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNY 251
YSS DM W+ G L A++ T D + V+ER N + YV H D
Sbjct: 47 VYSSDDMANWEAHGPGLRAKDFTWAKGDAWASQVIER-----NGKFYWYVTVRH--DDTK 99
Query: 252 TKAAVGVAISDYPTGPF----------DYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSE 301
A+GVA+ D P GPF + + + P +D D ++F DDDG AYL +
Sbjct: 100 PGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQAYLFWG-- 157
Query: 302 DNSELHIGPLTSDYLDVSNVVRRIL-VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV 360
N+ L + +++ +R I + + EA + K+ YY+ S G+ P +
Sbjct: 158 -NTRPRYAKLKKNMVELDGPIRAIEGLPEFTEAIWVHKYQDNYYL--SYAMGF-PEKIGY 213
Query: 361 HAAESIMGPW 370
+SI GPW
Sbjct: 214 AMGKSIKGPW 223
>pdb|3QEE|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QEE|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 307
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 25/190 (13%)
Query: 193 CYSSKDMWTWKNEGIVLAAEE-TNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNY 251
YSS DM W+ G L A++ T D + V+ER N + YV H D
Sbjct: 47 VYSSDDMANWEAHGPGLRAKDFTWAKGDAWASQVIER-----NGKFYWYVTVRH--DDTK 99
Query: 252 TKAAVGVAISDYPTGPF----------DYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSE 301
A+GVA+ D P GPF + + + P +D D ++F DDDG AYL +
Sbjct: 100 PGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQAYLFWG-- 157
Query: 302 DNSELHIGPLTSDYLDVSNVVRRIL-VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV 360
N+ L + +++ +R I + + EA + K+ YY+ S G+ P +
Sbjct: 158 -NTRPRYAKLKKNMVELDGPIRAIEGLPEFTEAIWVHKYQDNYYL--SYAMGF-PEKIGY 213
Query: 361 HAAESIMGPW 370
+SI GPW
Sbjct: 214 AMGKSIKGPW 223
>pdb|3QED|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QED|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QED|C Chain C, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QED|D Chain D, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 314
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 193 CYSSKDMWTWKNEGIVLAAEE-TNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNY 251
YSS D W+ G L A++ T D + V+ER Y YV H D
Sbjct: 54 VYSSDDXANWEAHGPGLRAKDFTWAKGDAWASQVIERNGKFY-----WYVTVRH--DDTK 106
Query: 252 TKAAVGVAISDYPTGPFDYLYSK----------RPHGFDSRDMTIFKDDDGVAYLVYSSE 301
A+GVA+ D P GPF K P +D D ++F DDDG AYL +
Sbjct: 107 PGFAIGVAVGDSPIGPFKDALGKALITNDXTTDTPIDWDDIDPSVFIDDDGQAYLFWG-- 164
Query: 302 DNSELHIGPLTSDYLDVSNVVRRIL-VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV 360
N+ L + +++ +R I + + EA + K+ YY+ S G+ P +
Sbjct: 165 -NTRPRYAKLKKNXVELDGPIRAIEGLPEFTEAIWVHKYQDNYYL--SYAXGF-PEKIGY 220
Query: 361 HAAESIMGPW 370
+SI GPW
Sbjct: 221 AXGKSIKGPW 230
>pdb|3QZ4|A Chain A, Crystal Structure Of An Endo-1,4-Beta-Xylanase D (Bt_3675)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.74 A
Resolution
pdb|3QZ4|B Chain B, Crystal Structure Of An Endo-1,4-Beta-Xylanase D (Bt_3675)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.74 A
Resolution
Length = 311
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 22/202 (10%)
Query: 193 CYSSKDMWTWKNEGIVL-AAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNY 251
+SSK++ TWK E ++L + + + +E K+ D KY + +
Sbjct: 48 VFSSKNLKTWKEETVILEXGKNVSWANGNAWAPCIEEKKI---DGKYKYFFYYSANPTTN 104
Query: 252 TKAAVGVAISDYPTGPFDYL----YSKRPHGFDSR-DMTIFKDD-DGVAYLVYSSEDNSE 305
+GVA++D PTGPF L + P G + D+ +F D G +YL + N
Sbjct: 105 KGKQIGVAVADSPTGPFTDLGKPIITSSPTGRGQQIDVDVFTDPVSGKSYLYWG---NGY 161
Query: 306 LHIGPLTSDYLDVSNVVRRILVGQ--------HREAPALFKHLGTYYMVTSGCTGWAPNE 357
L D L + +L + +REAP + G YY S +PN
Sbjct: 162 XAGAELNDDXLSIKEETTVVLTPKGGTLQTYAYREAPYVIYRKGIYYFFWSVDDTGSPNY 221
Query: 358 ALVHA-AESIMGPWEDMGNPCI 378
+V+ A+S +GP E P +
Sbjct: 222 HVVYGTAQSPLGPIEVAKEPIV 243
>pdb|2EXI|A Chain A, Structure Of The Family43 Beta-Xylosidase D15g Mutant From
Geobacillus Stearothermophilus
pdb|2EXI|B Chain B, Structure Of The Family43 Beta-Xylosidase D15g Mutant From
Geobacillus Stearothermophilus
pdb|2EXI|C Chain C, Structure Of The Family43 Beta-Xylosidase D15g Mutant From
Geobacillus Stearothermophilus
pdb|2EXI|D Chain D, Structure Of The Family43 Beta-Xylosidase D15g Mutant From
Geobacillus Stearothermophilus
Length = 535
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 83/210 (39%), Gaps = 48/210 (22%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK-----------------VI 232
GV Y SKD+ W+ L A N L +LN++ P +I
Sbjct: 37 GVRIYHSKDLKNWR-----LVARPLNR---LSQLNMIGNPDSGGVWAPHLSYSDGKFWLI 88
Query: 233 YNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDG 292
Y D W + T + A SD P YL S GFD ++F D+DG
Sbjct: 89 YTDVKVVEGQWKDGHNYLVTCDTIDGAWSD----PI-YLNSS---GFDP---SLFHDEDG 137
Query: 293 VAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHR-----------EAPALFKHLG 341
YLV D+ H P L +V ++ LVG+ + E P L+K G
Sbjct: 138 RKYLVNMYWDHRVDH-HPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKING 196
Query: 342 TYYMVTSGCTGWAPNEALVHAAESIMGPWE 371
YY++T+ + A + + S+ GP+E
Sbjct: 197 YYYLLTAEGGTRYNHAATIARSTSLYGPYE 226
>pdb|2EXH|A Chain A, Structure Of The Family43 Beta-Xylosidase From Geobacillus
Stearothermophilus
pdb|2EXH|B Chain B, Structure Of The Family43 Beta-Xylosidase From Geobacillus
Stearothermophilus
pdb|2EXH|C Chain C, Structure Of The Family43 Beta-Xylosidase From Geobacillus
Stearothermophilus
pdb|2EXH|D Chain D, Structure Of The Family43 Beta-Xylosidase From Geobacillus
Stearothermophilus
Length = 535
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 83/210 (39%), Gaps = 48/210 (22%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK-----------------VI 232
GV Y SKD+ W+ L A N L +LN++ P +I
Sbjct: 37 GVRIYHSKDLKNWR-----LVARPLNR---LSQLNMIGNPDSGGVWAPHLSYSDGKFWLI 88
Query: 233 YNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDG 292
Y D W + T + A SD P YL S GFD ++F D+DG
Sbjct: 89 YTDVKVVEGQWKDGHNYLVTCDTIDGAWSD----PI-YLNSS---GFDP---SLFHDEDG 137
Query: 293 VAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHR-----------EAPALFKHLG 341
YLV D+ H P L +V ++ LVG+ + E P L+K G
Sbjct: 138 RKYLVNMYWDHRVDH-HPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKING 196
Query: 342 TYYMVTSGCTGWAPNEALVHAAESIMGPWE 371
YY++T+ + A + + S+ GP+E
Sbjct: 197 YYYLLTAEGGTRYNHAATIARSTSLYGPYE 226
>pdb|2EXJ|A Chain A, Structure Of The Family43 Beta-Xylosidase D128g Mutant
From Geobacillus Stearothermophilus In Complex With
Xylobiose
pdb|2EXJ|B Chain B, Structure Of The Family43 Beta-Xylosidase D128g Mutant
From Geobacillus Stearothermophilus In Complex With
Xylobiose
pdb|2EXJ|C Chain C, Structure Of The Family43 Beta-Xylosidase D128g Mutant
From Geobacillus Stearothermophilus In Complex With
Xylobiose
pdb|2EXJ|D Chain D, Structure Of The Family43 Beta-Xylosidase D128g Mutant
From Geobacillus Stearothermophilus In Complex With
Xylobiose
Length = 535
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 285 TIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHR-----------EA 333
++F D+DG YLV D+ H P L +V ++ LVG+ + E
Sbjct: 130 SLFHDEDGRKYLVNMYWDHRVDH-HPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEG 188
Query: 334 PALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWE 371
P L+K G YY++T+ + A + + S+ GP+E
Sbjct: 189 PHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPYE 226
>pdb|2EXK|A Chain A, Structure Of The Family43 Beta-Xylosidase E187g From
Geobacillus Stearothermophilus In Complex With Xylobiose
pdb|2EXK|B Chain B, Structure Of The Family43 Beta-Xylosidase E187g From
Geobacillus Stearothermophilus In Complex With Xylobiose
pdb|2EXK|C Chain C, Structure Of The Family43 Beta-Xylosidase E187g From
Geobacillus Stearothermophilus In Complex With Xylobiose
pdb|2EXK|D Chain D, Structure Of The Family43 Beta-Xylosidase E187g From
Geobacillus Stearothermophilus In Complex With Xylobiose
Length = 535
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 82/210 (39%), Gaps = 48/210 (22%)
Query: 190 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK-----------------VI 232
GV Y SKD+ W+ L A N L +LN++ P +I
Sbjct: 37 GVRIYHSKDLKNWR-----LVARPLNR---LSQLNMIGNPDSGGVWAPHLSYSDGKFWLI 88
Query: 233 YNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDG 292
Y D W + T + A SD P YL S GFD ++F D+DG
Sbjct: 89 YTDVKVVEGQWKDGHNYLVTCDTIDGAWSD----PI-YLNSS---GFDP---SLFHDEDG 137
Query: 293 VAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHR-----------EAPALFKHLG 341
YLV D+ H P L +V ++ LVG+ + P L+K G
Sbjct: 138 RKYLVNMYWDHRVDH-HPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITGGPHLYKING 196
Query: 342 TYYMVTSGCTGWAPNEALVHAAESIMGPWE 371
YY++T+ + A + + S+ GP+E
Sbjct: 197 YYYLLTAEGGTRYNHAATIARSTSLYGPYE 226
>pdb|1YRZ|A Chain A, Crystal Structure Of Xylan Beta-1,4-Xylosidase From
Bacillus Halodurans C-125
pdb|1YRZ|B Chain B, Crystal Structure Of Xylan Beta-1,4-Xylosidase From
Bacillus Halodurans C-125
Length = 528
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 283 DMTIFKDDDGVAYLV---YSSEDNSELHIGPLTSDYLDVSNV----VRRILVG---QHRE 332
D ++F DDDG +LV + + G + +Y + V+ I G Q E
Sbjct: 129 DPSLFHDDDGRKWLVNMIWDYRKGNHPFAGIILQEYSEAEQKLVGPVKNIYKGTDIQLTE 188
Query: 333 APALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWE 371
P L+K G YY++ + + A + ++SI GP+E
Sbjct: 189 GPHLYKKDGYYYLLVAEGGTEYEHAATLARSQSIDGPYE 227
>pdb|3P2N|A Chain A, Discovery And Structural Characterization Of A New
Glycoside Hydrolase Family Abundant In Coastal Waters
That Was Annotated As 'hypothetical Protein'
pdb|3P2N|B Chain B, Discovery And Structural Characterization Of A New
Glycoside Hydrolase Family Abundant In Coastal Waters
That Was Annotated As 'hypothetical Protein'
Length = 408
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 55/158 (34%), Gaps = 59/158 (37%)
Query: 124 MKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAA 183
+K+NG YY +W P Q GG I E+ + + W
Sbjct: 102 IKENGK----YY---VWYSKSTGPTQGFGGDI---EKDKVFPW----------------- 134
Query: 184 ARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMW 243
D + +S+D WTWK EG + E K Y+DR+ V
Sbjct: 135 ---DRCDIWYATSEDGWTWKEEGPAVTRGE----------------KGAYDDRSVFTVEI 175
Query: 244 MHIDDCNY-------------TKAAVGVAISDYPTGPF 268
M +D Y K VG+A +D P GP+
Sbjct: 176 MKWEDKYYLCYQTVKSPYNVRVKNQVGLAWADSPDGPW 213
>pdb|3R4Y|A Chain A, Crystal Structure Of Alpha-Neoagarobiose Hydrolase
(Alpha-Nabh) From Saccharophagus Degradans 2-40
pdb|3R4Y|B Chain B, Crystal Structure Of Alpha-Neoagarobiose Hydrolase
(Alpha-Nabh) From Saccharophagus Degradans 2-40
pdb|3R4Z|A Chain A, Crystal Structure Of Alpha-Neoagarobiose Hydrolase
(Alpha-Nabh) In Complex With Alpha-D-Galactopyranose
From Saccharophagus Degradans 2- 40
pdb|3R4Z|B Chain B, Crystal Structure Of Alpha-Neoagarobiose Hydrolase
(Alpha-Nabh) In Complex With Alpha-D-Galactopyranose
From Saccharophagus Degradans 2- 40
Length = 374
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 317 DVSNVVRRILVGQHRE----APALFKHLGTYYMVTSGCTGWAPNEALVHAA----ESIMG 368
++ ++R G + + P + +H GTYY+V N +L H A +S G
Sbjct: 107 EIGPAIQRGAAGAYDDRAVFTPEVLRHNGTYYLVYQTVKAPYLNRSLEHIAIAYSDSPFG 166
Query: 369 PWEDMGNPCI 378
PW P +
Sbjct: 167 PWTKSDAPIL 176
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn
Length = 570
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 188 IIGVGC-YSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP---KVIYNDRTGKYVMW 243
+ G+ C ++++ EG + E T T +L VL+R +V D+ G ++ W
Sbjct: 237 LAGIECPRGARNLPGLVQEGEPFSEEATLFTKEL----VLQREVEVEVESMDKAGNFIGW 292
Query: 244 MHIDDCNYTKAAVGVAIS 261
+HID N + V A+S
Sbjct: 293 LHIDGANLSVLLVEHALS 310
>pdb|2X8T|A Chain A, Crystal Structure Of The Abn2 H318a Mutant
pdb|2X8T|B Chain B, Crystal Structure Of The Abn2 H318a Mutant
Length = 471
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 24/114 (21%)
Query: 238 GKYVMWMHIDDCNYTKAAVGVAISDYPTGPFD-------------------YLYSKRPHG 278
GKY M+ + + ++A+GVA++D GP+ Y +K P+
Sbjct: 110 GKYYMYYNACRGDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTPYDATKHPNV 169
Query: 279 FDSRDMTIFKDDDGVAYLVYSSEDNS--ELHIGPLTSDYLDVSNVVRRILVGQH 330
D F D DG ++VY S L + P T L +++L G H
Sbjct: 170 VDPH---TFFDKDGKLWMVYGSYSGGIFILEMNPKTGFPLPGQGYGKKLLGGNH 220
>pdb|2X8F|A Chain A, Native Structure Of Endo-1,5-Alpha-L-Arabinanases From
Bacillus Subtilis
pdb|2X8F|B Chain B, Native Structure Of Endo-1,5-Alpha-L-Arabinanases From
Bacillus Subtilis
Length = 470
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 24/114 (21%)
Query: 238 GKYVMWMHIDDCNYTKAAVGVAISDYPTGPFD-------------------YLYSKRPHG 278
GKY M+ + + ++A+GVA++D GP+ Y +K P+
Sbjct: 110 GKYYMYYNACRGDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTPYDATKHPNV 169
Query: 279 FDSRDMTIFKDDDGVAYLVYSSEDNS--ELHIGPLTSDYLDVSNVVRRILVGQH 330
D F D DG ++VY S L + P T L +++L G H
Sbjct: 170 VDPH---TFFDKDGKLWMVYGSYSGGIFILEMNPKTGFPLPGQGYGKKLLGGNH 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,949,842
Number of Sequences: 62578
Number of extensions: 659303
Number of successful extensions: 1170
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1134
Number of HSP's gapped (non-prelim): 28
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)