BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012300
         (466 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q86UR5|RIMS1_HUMAN Regulating synaptic membrane exocytosis protein 1 OS=Homo sapiens
           GN=RIMS1 PE=1 SV=1
          Length = 1692

 Score = 33.5 bits (75), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 70  EEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGN 129
           + E+++  PP+  RS R  K+R    ++  +E +   S   +    D++   + + + G+
Sbjct: 505 QSESVRPSPPKPHRSKRGGKKRQMSVSSSEEEGV---STPEYTSCEDVELESESVSEKGD 561

Query: 130 DSFYYYPGRIWLDTEGAPIQAH 151
             +Y+     W   E +PI +H
Sbjct: 562 LDYYWLDPATWHSRETSPISSH 583


>sp|Q9JIR4|RIMS1_RAT Regulating synaptic membrane exocytosis protein 1 OS=Rattus
           norvegicus GN=Rims1 PE=1 SV=1
          Length = 1615

 Score = 33.1 bits (74), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 70  EEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGN 129
           + E+++  PP+  R  R  KRR    ++  +E +   S   +    D++   + + + G+
Sbjct: 519 QSESVRPSPPKPHRPKRGGKRRQMSVSSSEEEGV---STPEYTSCEDVELESESVSEKGD 575

Query: 130 DSFYYYPGRIWLDTEGAPIQAH 151
             +Y+     W   E +PI +H
Sbjct: 576 LDYYWLDPATWHSRETSPISSH 597


>sp|P49943|XYLB_BACOV Xylosidase/arabinosidase OS=Bacteroides ovatus GN=xsa PE=2 SV=1
          Length = 325

 Score = 32.0 bits (71), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 203 KNEGIVLAAEETN-ETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAIS 261
           K+ G+VL+ E+       L+  +V+ +         GKY M+  + D N     +GVA+S
Sbjct: 66  KDHGVVLSTEDIPWAGRQLWDCDVVCK--------DGKYYMYFPLKDQN-DIFRIGVAVS 116

Query: 262 DYPTGPFDYLYSKRP-HGFDSRDMTIFKDDDGVAYLVYSS 300
           D P GPF  +    P  G  S D  ++ D DG  Y+ +  
Sbjct: 117 DKPYGPF--IPEANPMKGSYSIDPAVWDDGDGNYYIYFGG 154


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.139    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,730,462
Number of Sequences: 539616
Number of extensions: 9022550
Number of successful extensions: 18055
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18048
Number of HSP's gapped (non-prelim): 9
length of query: 466
length of database: 191,569,459
effective HSP length: 121
effective length of query: 345
effective length of database: 126,275,923
effective search space: 43565193435
effective search space used: 43565193435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)