Query 012300
Match_columns 466
No_of_seqs 336 out of 2175
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 01:10:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08985 GH43_6 Glycosyl hydrol 100.0 1.5E-56 3.2E-61 443.3 31.9 264 148-430 1-265 (265)
2 cd09003 GH43_AXH_1 Glycosyl hy 100.0 4.9E-42 1.1E-46 347.1 28.6 263 151-432 10-304 (311)
3 cd08988 GH43_ABN Glycosyl hydr 100.0 1.9E-41 4.1E-46 337.6 29.6 252 151-430 1-279 (279)
4 cd09004 GH43_bXyl Glycosyl hyd 100.0 2.9E-41 6.2E-46 334.7 29.0 258 146-436 1-270 (275)
5 cd08981 GH43_2 Glycosyl hydrol 100.0 7.4E-41 1.6E-45 335.5 29.8 254 148-432 4-285 (291)
6 cd08990 GH43_AXH_like Glycosyl 100.0 6.8E-40 1.5E-44 324.9 28.9 252 152-432 2-268 (274)
7 cd08989 GH43_XYL Glycosyl hydr 100.0 9.8E-40 2.1E-44 323.7 29.0 258 146-431 1-269 (269)
8 cd09002 GH43_XYL_3 Glycosyl hy 100.0 5.6E-39 1.2E-43 320.2 29.1 248 145-432 7-274 (280)
9 cd09000 GH43_XYL_1 Glycosyl hy 100.0 6.4E-39 1.4E-43 320.3 29.3 258 150-432 8-282 (288)
10 PF04616 Glyco_hydro_43: Glyco 100.0 5.8E-39 1.3E-43 317.9 28.1 261 146-432 3-282 (286)
11 cd09001 GH43_XYL_2 Glycosyl hy 100.0 8.9E-39 1.9E-43 316.9 27.6 246 145-432 3-263 (269)
12 cd08999 GH43_ABN_2 Glycosyl hy 100.0 3.2E-38 7E-43 313.6 31.3 258 146-431 1-282 (287)
13 cd08991 GH43_bXyl_2 Glycosyl h 100.0 6.5E-38 1.4E-42 313.2 31.7 255 152-432 2-285 (294)
14 cd08998 GH43_ABN_1 Glycosyl hy 100.0 3.2E-37 7E-42 307.9 31.1 257 150-432 1-282 (288)
15 cd08986 GH43_7 Glycosyl hydrol 100.0 9.5E-37 2.1E-41 302.5 24.9 233 151-410 3-254 (269)
16 cd08982 GH43_3 Glycosyl hydrol 100.0 5.5E-36 1.2E-40 300.9 29.0 233 150-432 3-260 (295)
17 cd08978 GH_F Glycosyl hydrolas 100.0 8.2E-36 1.8E-40 291.9 29.2 255 151-430 1-271 (271)
18 cd08980 GH43_1 Glycosyl hydrol 100.0 1.6E-33 3.4E-38 281.3 29.5 254 151-432 1-281 (288)
19 cd08772 GH43_62_32_68 Glycosyl 100.0 3E-29 6.5E-34 246.4 28.3 238 151-412 1-263 (286)
20 cd08984 GH43_5 Glycosyl hydrol 100.0 2.2E-29 4.7E-34 252.6 26.9 257 150-430 11-285 (294)
21 COG3507 XynB Beta-xylosidase [ 100.0 2.1E-27 4.5E-32 248.7 24.0 215 145-379 22-256 (549)
22 cd08983 GH43_4 Glycosyl hydrol 99.9 1.7E-25 3.6E-30 222.9 24.6 217 151-401 19-247 (276)
23 cd08987 GH62 Glycosyl hydrolas 99.9 2.9E-24 6.4E-29 211.3 23.8 199 151-381 25-242 (303)
24 cd08995 GH32_Aec43_like Glycos 99.9 2.1E-20 4.6E-25 185.7 24.7 203 152-373 2-221 (280)
25 cd08992 GH43_like_1 Glycosyl h 99.9 2.8E-20 6E-25 189.8 26.0 203 146-382 33-251 (349)
26 cd08997 GH68 Glycosyl hydrolas 99.9 7.5E-20 1.6E-24 186.8 25.4 203 186-398 38-309 (349)
27 cd08994 GH43_like_2 Glycosyl h 99.8 1.2E-18 2.7E-23 174.0 26.1 213 150-376 13-253 (291)
28 COG3940 Predicted beta-xylosid 99.8 3.5E-18 7.6E-23 160.0 24.3 271 150-453 13-321 (324)
29 cd08979 GH_J Glycosyl hydrolas 99.7 4E-16 8.6E-21 153.3 21.5 192 162-372 14-229 (276)
30 cd08996 GH32_B_Fructosidase Gl 99.7 1.5E-15 3.2E-20 152.2 22.6 179 152-351 6-202 (298)
31 cd08990 GH43_AXH_like Glycosyl 99.6 1.3E-14 2.7E-19 144.1 18.9 206 57-302 32-248 (274)
32 cd08999 GH43_ABN_2 Glycosyl hy 99.6 4.2E-14 9E-19 140.6 20.1 215 58-302 32-263 (287)
33 cd08994 GH43_like_2 Glycosyl h 99.6 7.2E-14 1.6E-18 139.6 19.6 184 150-348 80-290 (291)
34 cd08993 GH43_DUF377 Glycosyl h 99.6 1.8E-13 3.9E-18 135.5 21.9 206 152-382 2-226 (268)
35 cd08986 GH43_7 Glycosyl hydrol 99.5 1.9E-13 4.1E-18 135.8 16.5 207 58-302 38-257 (269)
36 cd09004 GH43_bXyl Glycosyl hyd 99.5 4.4E-13 9.5E-18 133.0 18.9 198 58-301 36-247 (275)
37 TIGR01322 scrB_fam sucrose-6-p 99.5 9.4E-13 2E-17 139.8 20.0 174 154-349 31-224 (445)
38 smart00640 Glyco_32 Glycosyl h 99.5 1E-12 2.3E-17 139.2 20.3 179 153-351 13-216 (437)
39 cd08772 GH43_62_32_68 Glycosyl 99.5 1.8E-12 3.8E-17 127.4 18.1 215 58-301 27-263 (286)
40 cd08995 GH32_Aec43_like Glycos 99.5 5.3E-12 1.2E-16 125.5 19.9 205 58-297 32-246 (280)
41 cd08988 GH43_ABN Glycosyl hydr 99.4 8.1E-12 1.8E-16 124.7 19.4 206 58-301 21-262 (279)
42 cd08991 GH43_bXyl_2 Glycosyl h 99.4 5.2E-12 1.1E-16 126.3 18.1 218 58-301 25-265 (294)
43 PF00251 Glyco_hydro_32N: Glyc 99.4 1.3E-11 2.8E-16 125.0 19.9 201 152-373 12-237 (308)
44 cd09003 GH43_AXH_1 Glycosyl hy 99.4 7.6E-12 1.7E-16 127.0 17.5 208 57-301 47-279 (311)
45 cd08981 GH43_2 Glycosyl hydrol 99.4 2.8E-11 6.1E-16 121.7 20.6 214 58-301 38-268 (291)
46 PF02435 Glyco_hydro_68: Levan 99.4 1.6E-11 3.5E-16 127.3 19.3 237 187-432 94-411 (428)
47 PF04616 Glyco_hydro_43: Glyco 99.4 3.8E-12 8.2E-17 126.1 12.6 213 58-301 35-260 (286)
48 cd09000 GH43_XYL_1 Glycosyl hy 99.4 2.1E-11 4.5E-16 122.0 17.8 212 58-301 33-258 (288)
49 cd08978 GH_F Glycosyl hydrolas 99.4 5.9E-11 1.3E-15 116.1 19.7 212 58-302 26-254 (271)
50 cd09002 GH43_XYL_3 Glycosyl hy 99.3 2.4E-11 5.2E-16 121.5 16.3 200 58-301 40-254 (280)
51 cd08998 GH43_ABN_1 Glycosyl hy 99.3 7.3E-11 1.6E-15 118.0 19.7 209 58-301 22-263 (288)
52 cd08989 GH43_XYL Glycosyl hydr 99.3 4.4E-11 9.4E-16 118.9 17.5 204 59-301 34-250 (269)
53 cd09001 GH43_XYL_2 Glycosyl hy 99.3 3.7E-11 7.9E-16 119.4 16.3 200 58-299 36-244 (269)
54 cd08982 GH43_3 Glycosyl hydrol 99.3 2.7E-10 5.8E-15 114.9 18.1 198 60-301 25-240 (295)
55 cd08985 GH43_6 Glycosyl hydrol 99.2 4E-10 8.6E-15 111.9 17.5 210 56-302 30-248 (265)
56 cd08992 GH43_like_1 Glycosyl h 99.2 6.4E-10 1.4E-14 114.1 17.3 179 55-300 78-269 (349)
57 cd08980 GH43_1 Glycosyl hydrol 99.1 7.3E-09 1.6E-13 103.6 18.9 217 58-301 23-260 (288)
58 cd08979 GH_J Glycosyl hydrolas 99.1 5.2E-09 1.1E-13 102.7 17.5 160 56-248 33-210 (276)
59 cd08996 GH32_B_Fructosidase Gl 99.1 7.1E-09 1.5E-13 103.9 18.1 205 58-297 34-256 (298)
60 cd08984 GH43_5 Glycosyl hydrol 99.0 9.8E-09 2.1E-13 103.2 17.3 194 57-301 48-256 (294)
61 cd08983 GH43_4 Glycosyl hydrol 99.0 4.1E-08 8.8E-13 98.1 20.4 178 224-414 16-208 (276)
62 cd08997 GH68 Glycosyl hydrolas 98.9 4.8E-08 1E-12 100.4 17.3 194 58-272 43-286 (349)
63 PF00251 Glyco_hydro_32N: Glyc 98.8 2.8E-08 6.1E-13 100.7 13.1 223 37-297 22-267 (308)
64 COG1621 SacC Beta-fructosidase 98.8 1.3E-07 2.7E-12 100.8 18.4 176 152-348 44-235 (486)
65 TIGR01322 scrB_fam sucrose-6-p 98.8 1.5E-07 3.3E-12 100.1 17.9 208 58-297 57-285 (445)
66 PF03664 Glyco_hydro_62: Glyco 98.8 9.1E-07 2E-11 85.3 20.6 195 151-379 26-239 (271)
67 smart00640 Glyco_32 Glycosyl h 98.8 1.7E-07 3.7E-12 99.6 17.3 203 58-297 40-270 (437)
68 cd08993 GH43_DUF377 Glycosyl h 98.6 2.3E-06 5E-11 84.8 17.2 138 228-374 2-155 (268)
69 COG3507 XynB Beta-xylosidase [ 98.6 9.9E-07 2.2E-11 94.0 15.1 209 60-299 57-286 (549)
70 PF04041 DUF377: Domain of unk 98.5 1.4E-05 3.1E-10 81.4 20.9 176 190-380 61-258 (312)
71 cd08987 GH62 Glycosyl hydrolas 97.9 0.00069 1.5E-08 67.9 17.0 163 66-271 55-230 (303)
72 COG1621 SacC Beta-fructosidase 97.8 0.00065 1.4E-08 72.8 16.9 204 60-300 74-300 (486)
73 KOG0228 Beta-fructofuranosidas 97.8 0.00024 5.2E-09 75.1 13.0 161 161-339 69-248 (571)
74 PF04041 DUF377: Domain of unk 97.2 0.0088 1.9E-07 61.1 14.5 189 223-432 29-241 (312)
75 PF02435 Glyco_hydro_68: Levan 97.1 0.0033 7.1E-08 66.2 10.4 112 151-272 211-350 (428)
76 KOG0228 Beta-fructofuranosidas 96.1 0.044 9.6E-07 58.5 10.8 154 38-236 73-250 (571)
77 COG2152 Predicted glycosylase 96.1 0.27 5.8E-06 49.7 15.6 179 188-380 60-258 (314)
78 PF13088 BNR_2: BNR repeat-lik 95.8 2 4.4E-05 42.0 20.8 199 151-373 49-249 (275)
79 COG2152 Predicted glycosylase 94.8 0.9 2E-05 46.0 14.6 135 160-311 153-300 (314)
80 COG3940 Predicted beta-xylosid 93.5 5.2 0.00011 38.7 16.0 179 92-301 68-278 (324)
81 PF13088 BNR_2: BNR repeat-lik 93.5 7.1 0.00015 38.0 18.0 172 188-372 15-198 (275)
82 PF13810 DUF4185: Domain of un 89.7 27 0.00057 35.9 24.3 168 236-414 103-307 (316)
83 PF03664 Glyco_hydro_62: Glyco 89.3 23 0.0005 35.0 15.7 171 226-416 25-210 (271)
84 PF13810 DUF4185: Domain of un 72.1 5.6 0.00012 40.8 4.8 68 229-302 234-307 (316)
85 KOG3545 Olfactomedin and relat 48.9 1.8E+02 0.0038 29.0 10.2 68 279-351 122-190 (249)
86 smart00284 OLF Olfactomedin-li 48.7 50 0.0011 32.9 6.5 65 282-349 129-194 (255)
87 cd00260 Sialidase Sialidases o 42.8 3.7E+02 0.008 27.1 20.3 175 190-374 113-303 (351)
88 PF02191 OLF: Olfactomedin-lik 33.0 1.7E+02 0.0036 29.0 7.5 66 283-351 125-191 (250)
89 cd00184 TNF Tumor Necrosis Fac 22.8 1.3E+02 0.0029 26.5 4.3 32 137-169 16-52 (137)
90 PF05567 Neisseria_PilC: Neiss 20.3 5.6E+02 0.012 26.4 9.0 118 226-348 148-276 (335)
No 1
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=100.00 E-value=1.5e-56 Score=443.32 Aligned_cols=264 Identities=57% Similarity=1.032 Sum_probs=231.1
Q ss_pred EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeee
Q 012300 148 IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLE 227 (466)
Q Consensus 148 I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iW 227 (466)
|+|||++|++. +++||||+|++.... ..+.+|.||+|+||+||++++.||+..+. .......+.+|
T Consensus 1 i~ah~~~i~~~--~~~yY~ygs~~~~~~----------~~~~gi~~~sS~DLvnW~~~g~vl~~~~~--~~~~~~~~~~w 66 (265)
T cd08985 1 IQAHGGGILKV--GGTYYWYGENKGGGD----------TAFGGVSCYSSTDLVNWTFEGLALTPEED--SADLGPGRIIE 66 (265)
T ss_pred CccccCceEEE--CCEEEEEEEecCCCC----------cccccEEEEECCCCccceECceecccccc--ccccccCcEEE
Confidence 67999999986 489999999875311 23678999999999999999999987652 01123567899
Q ss_pred eceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCCCcEE
Q 012300 228 RPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELH 307 (466)
Q Consensus 228 AP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i~ 307 (466)
||+|+|++++|+|||||++.+.++...+||||+|++|+|||++.+...+.+..+|||+||+|+||++||+|+++.+..++
T Consensus 67 aP~v~y~~~~g~Y~m~~~~~~~~~~~~~igvA~Sd~p~Gpf~~~~~~~~~~~~~~Dp~vf~DdDG~~Yl~~~~~~~~~i~ 146 (265)
T cd08985 67 RPKVIYNAKTGKYVMWMHIDSSDYSDARVGVATSDTPTGPYTYLGSFRPLGYQSRDFGLFVDDDGTAYLLYSDRDNSDLY 146 (265)
T ss_pred CCeEEEeCCCCEEEEEEEeCCCCCcceeEEEEEeCCCCCCCEECCccCCCCCCccCCceEEcCCCCEEEEEecCCCCceE
Confidence 99999998999999999997655567899999999999999998766667788999999999999999999987667899
Q ss_pred EEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeCCCccccCCccceee
Q 012300 308 IGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLT 387 (466)
Q Consensus 308 i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~gnPi~~~~~~~~~~ 387 (466)
|+||++|++++.++...+..+..+|||+|||++|+|||+||.+++|.++...+++|++|+|||+..+++..++ .+
T Consensus 147 i~~L~~d~~~~~~~~~~~~~~~~~EaP~i~K~~g~YYL~~S~~t~~~~~~~~y~~s~s~~GP~~~~~~~~~~~-----~~ 221 (265)
T cd08985 147 IYRLTDDYLSVTGEVTTVFVGAGREAPAIFKRNGKYYLLTSGLTGWNPNDARYATATSILGPWTDLGNPGPGG-----ST 221 (265)
T ss_pred EEEeCCCcccccceEEEccCCCccccceEEEECCEEEEEEccCCCccCCceEEEEecCCCCCccccCcCCCCC-----Cc
Confidence 9999999999999887777788999999999999999999999899888777789999999999999875443 58
Q ss_pred ccCCCceEEEcccC-CcccEEEEEeEeCCCCCCCCeeEEEEEEE
Q 012300 388 TFFAQSTYVIPLAG-LPGLYIFMADRWNPADLRESRYIWLPLIV 430 (466)
Q Consensus 388 t~~sq~~~v~~~~G-~~~~yi~~~d~w~~~~~~~~R~v~lPl~~ 430 (466)
||.+|+++|++++| ++++||||||||++.++.++|||||||+|
T Consensus 222 t~~sq~~~v~~~~g~~~~~~~~~~drw~~~~~~~s~yvwlp~~~ 265 (265)
T cd08985 222 TYGSQTTFVLPVPGSKQTTYIYMGDRWNPSDLGDSRYVWLPLTF 265 (265)
T ss_pred EECCCcceEEEeCCCCCCEEEEEEcccCCCCCCCCEEEEEEeeC
Confidence 99999999999998 44799999999999999999999999975
No 2
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=100.00 E-value=4.9e-42 Score=347.14 Aligned_cols=263 Identities=20% Similarity=0.225 Sum_probs=190.5
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccC-CCcccccccCCCCeeeec
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAA-EETNETHDLYKLNVLERP 229 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~-~~~~~~~~~~~~~~iWAP 229 (466)
+||.|++. +|+||+|+|......-.....+.....+++|.||+|+||++|+.++.||.. ....| ...+|||
T Consensus 10 aDP~~~~~--~g~yY~~~t~~~~~~~~~~~~~~~~~~~~~i~v~~S~DL~~W~~~g~v~~~~~~~~w------~~~~WAP 81 (311)
T cd09003 10 ADPTAVVY--NGRVYVYTTNDDYEYDSNTIKDNNYYNINDITVISSDDMVNWTDHGEIFVPNGIAKW------AGNSWAP 81 (311)
T ss_pred CCCCeEEE--CCEEEEEeCCCCccccccccccCCccccCcEEEEECCCCCCcEEcccccCcCCCCCc------ccccCCC
Confidence 68888875 599999999753100000000112235679999999999999999999973 33333 2368999
Q ss_pred eEEEEccC----CEEEEEEEEeCCCCCcceEEEEEeCCCCCCceec-cc-cC----C---CCCCccCceEEEcCCCcEEE
Q 012300 230 KVIYNDRT----GKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYL-YS-KR----P---HGFDSRDMTIFKDDDGVAYL 296 (466)
Q Consensus 230 ~viyn~~~----GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~-~~-~~----p---~g~~~iDp~vF~DdDG~~YL 296 (466)
+|++ ++ |+|||||++. ..+|+||+|++|+|||++. +. .. + ....+|||+||+|+||+.||
T Consensus 82 ~v~~--~~~~~~gkyylyy~~~-----~~~igva~SdsP~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl 154 (311)
T cd09003 82 SIAV--KKINGKGKFYLYFANG-----GGGIGVLTADSPVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDDDGQGYL 154 (311)
T ss_pred ceEE--eccCCCCEEEEEEecC-----CCeEEEEEcCCCCCCcccCCCCeeecCCCCCccCCccccCCCeEECCCCCEEE
Confidence 9998 55 9999999863 3579999999999999975 21 11 1 12347999999999999999
Q ss_pred EEEecCC-------CcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCC-----CCCCCcEEEE-Ee
Q 012300 297 VYSSEDN-------SELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCT-----GWAPNEALVH-AA 363 (466)
Q Consensus 297 ~~g~~~n-------~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~t-----g~~~n~~v~~-~S 363 (466)
+|++... +.++++||++|++++.++...+..+..+|||+|+|++|+|||+||... +...+|.+.+ +|
T Consensus 155 ~~g~~~~~~~~~~~~~i~i~~l~~D~~~~~g~~~~i~~~~~~Egp~~~K~~G~YYL~ys~~~~~~~~~~~~~y~v~y~~s 234 (311)
T cd09003 155 YFGGGVPGGRWANPNTARVIKLGDDMISVDGSAVTIDAPYFFEASGLHKINGTYYYSYCTNFGGRDPGKPPPGRIAYMTS 234 (311)
T ss_pred EECCccCCCccccCCCEEEEEeCCCceeccCCceEccCCCceEeeeEEEECCEEEEEEeCCCCccCCCCCCceeEEEEEc
Confidence 9986322 479999999999999998877776678999999999999999999642 2345677765 89
Q ss_pred CCCCCCceeCCCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCC----CCCCeeE-EEEEEEcC
Q 012300 364 ESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPAD----LRESRYI-WLPLIVRG 432 (466)
Q Consensus 364 ds~~GPw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~----~~~~R~v-~lPl~~~~ 432 (466)
++|+|||++.+. ++...... ....+++|++|++.+| +||++||.+-.+.. ....|++ +.||.|++
T Consensus 235 ~~~~GP~~~~g~-il~~~~~~-~~~~g~gH~s~~~~~g--~~y~vyH~~~~~~~~~~~~~~~R~~~i~~~~~~~ 304 (311)
T cd09003 235 KNPMGPFTYKGI-ILKNPGAF-FGNGGNNHHSIFEFKG--KWYIAYHARTLAKALGGATAGYRSPHIDELTYNE 304 (311)
T ss_pred CCCCCCcccCCE-eccCCccc-cCCccCCCccEEEeCC--eEEEEEeCCcCCccccCCCCceEEEEEEEEEECC
Confidence 999999998764 33321100 1123455566777766 89999986554421 2446776 47899985
No 3
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=100.00 E-value=1.9e-41 Score=337.57 Aligned_cols=252 Identities=20% Similarity=0.248 Sum_probs=187.7
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCccccc--ccCCCCeeee
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETH--DLYKLNVLER 228 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~--~~~~~~~iWA 228 (466)
|||+|++. +++||||+|. .++.|++|+||+||+.++.+|+.... |.. .....+.+||
T Consensus 1 ~DP~vi~~--~~~YY~~~T~------------------~g~~v~~S~DL~~W~~~g~~~~~~~~-~~~~~~~~~~~~~WA 59 (279)
T cd08988 1 HDPVIIKE--GDTWYVFGTG------------------PGITILSSKDLVNWTYSGSAFATEPT-WKKRVPPSFDGHLWA 59 (279)
T ss_pred CCCEEEEE--CCEEEEEEec------------------CCEEEEECCCcCCccccCccccCCCc-cccccCCCCCCCEec
Confidence 78999987 4799999984 15899999999999999999875432 321 1123467999
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecc-----c----cCCCCCCccCceEEEcCCCcEEEEEE
Q 012300 229 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLY-----S----KRPHGFDSRDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 229 P~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~-----~----~~p~g~~~iDp~vF~DdDG~~YL~~g 299 (466)
|+|++ .+|+|||||++...+....+||||+|++|+|||++.+ . ..+.+..+|||++|+|+||+.||+|+
T Consensus 60 P~v~~--~~G~yylyys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~DdDG~~Yl~~g 137 (279)
T cd08988 60 PDIYQ--HNGKFYLYYSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQHGQPWLSFG 137 (279)
T ss_pred ceEEE--ECCEEEEEEEeccCCCCCceEEEEEcCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcCCCCEEEEec
Confidence 99998 6799999999875444467899999999999998654 1 11224568999999999999999999
Q ss_pred ecCCCcEEEEEcCCCCCCc--cccEEEeecC----ceeeeeEEEEECCEEEEEEeCCC---CCCCCcEEE-EEeCCCCCC
Q 012300 300 SEDNSELHIGPLTSDYLDV--SNVVRRILVG----QHREAPALFKHLGTYYMVTSGCT---GWAPNEALV-HAAESIMGP 369 (466)
Q Consensus 300 ~~~n~~i~i~~Ls~D~~~~--~g~~~~i~~g----~~~EgP~ifK~~G~YYL~yS~~t---g~~~n~~v~-~~Sds~~GP 369 (466)
++. +.|.++||++|++.+ .++...+..+ ...|||+|+|++|+||||+|... +...+|.+. ++|++|+||
T Consensus 138 ~~~-~gi~~~eL~~d~~~~~~~~~~~~i~~~~~~~~~~Egp~i~k~~g~YYl~~S~g~~~~~~~~~y~v~~arS~~~~GP 216 (279)
T cd08988 138 SFW-GGIKLFELDKDTMKPAEPGELHSIAGRERSSAAIEAPFILYRGDYYYLFVSFGLCCRGGDSTYKIAVGRSKNITGP 216 (279)
T ss_pred ccC-CCEEEEEECcccCCccCCCcceEEeccCCCCCceEeeEEEEcCCeEEEEEEcCcccCCCCCCeEEEEEEeCCCCCC
Confidence 753 579999999999886 3555555433 57999999999999999999632 345567665 589999999
Q ss_pred ceeC-CCccccCCcc--c--eeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEE-EEEEE
Q 012300 370 WEDM-GNPCIGGNKV--F--RLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIW-LPLIV 430 (466)
Q Consensus 370 w~~~-gnPi~~~~~~--~--~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v~-lPl~~ 430 (466)
|+.. ++|++..... + ...-.+.+|++|+..+| ++||+||..-.. ....|.++ .||.|
T Consensus 217 y~~~~~~p~~~~~~~~~~~~~~~~~g~GH~~v~~~~g--~~~~~yH~~~~~--~~~~r~~~i~~l~~ 279 (279)
T cd08988 217 YLDKTGRSMLQGGGTILDKGNDRWVGPGHNSAYTDDG--KDYLVLHAYDAA--DNGEPKLKILPLHW 279 (279)
T ss_pred CCCCCCCCcccCCceEEEcCCCcEEcCCCCEEEeCCC--CEEEEEEEeeCC--CCCCcEEEEEeccC
Confidence 9997 7888753210 0 01224455667777665 789888865443 35667765 46654
No 4
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=100.00 E-value=2.9e-41 Score=334.71 Aligned_cols=258 Identities=26% Similarity=0.347 Sum_probs=200.4
Q ss_pred CeEE---eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQ---AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~---ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||+ .+||.|++. +|+||||+|..... ..+.++.+++|+||++|+.++.+|+..+..| .
T Consensus 1 NPv~~g~~~DP~i~~~--~g~yY~~~t~~~~~-----------~~~~~~~~~~S~Dl~~W~~~g~~l~~~~~~~-----~ 62 (275)
T cd09004 1 NPILPGWYADPEIRIF--GGTYYIYPTSDGAG-----------GEQTPFDVFSSKDLVNWTKEGIILDMADVSW-----A 62 (275)
T ss_pred CCcCCCCCCCCCeEEE--CCEEEEEEeccCCC-----------CCeeEEEEEECCCCCCceECcccccccCCcc-----c
Confidence 4553 368999986 48999999864310 0135799999999999999999987653332 3
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceec-ccc-C---CCCCCccCceEEEcCCCcEEEE
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYL-YSK-R---PHGFDSRDMTIFKDDDGVAYLV 297 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~-~~~-~---p~g~~~iDp~vF~DdDG~~YL~ 297 (466)
.+.+|||+|++ .+|+|||||++. .+|+||+|++|+|||++. +.. . ..+..+|||+||+|+||+.||+
T Consensus 63 ~~~~wAP~v~~--~~g~yy~yys~~------~~i~va~s~~p~gp~~~~~~~p~~~~~~~~~~~iDp~vf~d~dG~~yl~ 134 (275)
T cd09004 63 NRAAWAPSVIE--RNGKYYFYFSAN------GGIGVAVADSPLGPFKDALGKPLIDKFTFGAQPIDPDVFIDDDGQAYLY 134 (275)
T ss_pred CCCcCCCeEEE--ECCEEEEEEEcC------CcEEEEEeCCCCCCCCCCCCCccccCCcCCCCccCCCeEECCCCCEEEE
Confidence 56799999998 679999999974 579999999999999973 211 1 1256799999999999999999
Q ss_pred EEecCCCcEEEEEcCCCCCCccccEEEe--ecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE-EeCCCCCCceeCC
Q 012300 298 YSSEDNSELHIGPLTSDYLDVSNVVRRI--LVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVH-AAESIMGPWEDMG 374 (466)
Q Consensus 298 ~g~~~n~~i~i~~Ls~D~~~~~g~~~~i--~~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~-~Sds~~GPw~~~g 374 (466)
|+++ +.+.+++|++|+++++++...+ ..+...|||+|+|++|+|||+||.+....++|.+.+ +|++|+|||++.+
T Consensus 135 ~~~~--~~~~i~~l~~d~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~yyl~ys~~~~~~~~Y~~~ya~s~~~~GP~~~~~ 212 (275)
T cd09004 135 WGGW--GHCNVAKLNEDMISFDGERDGSEITPKNYFEGPFMFKRNGIYYLMWSEGGWTDPDYHVAYAMADSPLGPFERPG 212 (275)
T ss_pred EcCc--CCEEEEEECCCcccccCcceeeeccCCCceecceEEEECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcccCC
Confidence 9864 4688999999999988776553 335689999999999999999997654456677765 7999999999987
Q ss_pred CccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEE-EEEEEcCCCCC
Q 012300 375 NPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIW-LPLIVRGPADR 436 (466)
Q Consensus 375 nPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v~-lPl~~~~~~~~ 436 (466)
++++.... ...++.+|++|++.++..+||++||.+..+......|.++ .||.|++ |+
T Consensus 213 ~~~~~~~~---~~~~g~gH~~~~~~~~~~~~~~~yh~~~~~~~~~~~R~~~i~~~~~~~--dG 270 (275)
T cd09004 213 NIILQQDP---GIATGPGHHSVVNVPGTDEWYIVYHRRPLPETDGNHRQTCIDRMEFNE--DG 270 (275)
T ss_pred cEeeeCCC---CCcccCCCCEEEEeCCCCeEEEEEeCCCCCCCCCceeeEEEEEEEECC--CC
Confidence 66654321 3456777778888774447999999877654566778866 5999986 55
No 5
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=100.00 E-value=7.4e-41 Score=335.55 Aligned_cols=254 Identities=22% Similarity=0.322 Sum_probs=194.4
Q ss_pred EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeee
Q 012300 148 IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLE 227 (466)
Q Consensus 148 I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iW 227 (466)
++.|||.|++++++|+||||+|..... + ....+++.||+|+||+||+.++.|+...+..| ....+|
T Consensus 4 ~~~~DP~v~~~~~~g~yYl~~T~~~~~-----~----~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~-----~~~~~W 69 (291)
T cd08981 4 IRIRDPFILADPETGTYYLYGTTDPNI-----W----GGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFW-----ADDNFW 69 (291)
T ss_pred ccccCCEEEEECCCCEEEEEEecCccc-----c----ccCCCcEEEEECCChhcccccceeeccCCCcC-----cccccc
Confidence 457999999987789999999975310 0 12346899999999999999999997654433 345799
Q ss_pred eceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--cCCCCCCccCceEEEcCCCcEEEEEEec----
Q 012300 228 RPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KRPHGFDSRDMTIFKDDDGVAYLVYSSE---- 301 (466)
Q Consensus 228 AP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~p~g~~~iDp~vF~DdDG~~YL~~g~~---- 301 (466)
||+|++ .+|+|||||++...+....+|+||+|++|+|||++... ..+.+..+|||++|+|+||+.||+|++.
T Consensus 70 AP~v~~--~~G~yyly~s~~~~~~~~~~~~va~s~~p~GP~~~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~~~~~~~~ 147 (291)
T cd08981 70 APEVHE--YKGRYYMFATFHNPGGERRGTAILVSDSPEGPFVPHSDGPVTPEDWMCLDGTLYVDEDGKPWMVFCHEWVQV 147 (291)
T ss_pred CCeeee--eCCEEEEEEEeccCCCceeeEEEEECCCCCCCCEeCCCCccCCCCCceEcCceEEcCCCCEEEEEEeccccc
Confidence 999997 89999999998654333467999999999999998642 2234457899999999999999999752
Q ss_pred CCCcEEEEEcCCCCCCccccEEEeec------------------CceeeeeEEEEE-CCEEEEEEeCCCCCCCCcEEEE-
Q 012300 302 DNSELHIGPLTSDYLDVSNVVRRILV------------------GQHREAPALFKH-LGTYYMVTSGCTGWAPNEALVH- 361 (466)
Q Consensus 302 ~n~~i~i~~Ls~D~~~~~g~~~~i~~------------------g~~~EgP~ifK~-~G~YYL~yS~~tg~~~n~~v~~- 361 (466)
.++.|+++||++|++++.|++++++. ....|||+|+|+ +|+|||+||.++ .++|.+.+
T Consensus 148 ~~~~i~~~eL~~d~~~~~ge~~~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k~~~G~YYl~yS~~~--~~~Y~~~~~ 225 (291)
T cd08981 148 YDGTIEAVRLSPDLSRAIGEPVLLFRASEAPWVREFGLIGRGSGGYVTDGPFLYRTKSGRLLMLWSSFS--DGGYAQGVA 225 (291)
T ss_pred CCCCEEEEEeCCCccccCCceEEEecCCcCCcccccccccccCCCeEeeCCEEEEeCCCcEEEEEEecC--CCCEEEEEE
Confidence 24679999999999998888776542 126799999995 899999999643 45676654
Q ss_pred EeCC--CCCCceeCCCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEEEEEEEcC
Q 012300 362 AAES--IMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRG 432 (466)
Q Consensus 362 ~Sds--~~GPw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v~lPl~~~~ 432 (466)
+|++ |+|||++.++|++.. ..+|+ ++|...+| +||++||.. . ....+|.+++||.+++
T Consensus 226 rs~s~~~~GPy~~~~~pi~~~-------~~GH~-s~v~~~~G--~~~~vyH~~-~--~~~~~~~~~~~~~~~~ 285 (291)
T cd08981 226 RSESGTLLGPWVQEPEPLISD-------DGGHG-MLFRTFDG--RLMLSLHTP-N--KHPDERPIFIEVDEDG 285 (291)
T ss_pred EcCCCCccCCcEECCCcccCC-------CCCCC-eeEEcCCC--CEEEEEECC-C--CCCCeeeEEEEEeecC
Confidence 6776 999999998887653 12222 24446666 588888755 3 3455778899999986
No 6
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=100.00 E-value=6.8e-40 Score=324.91 Aligned_cols=252 Identities=23% Similarity=0.316 Sum_probs=191.3
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
||.|++. +|+||+|+|.+.... .+ ....+.++.|++|+||+||+.++.||+..+.. .+..+.+|||+|
T Consensus 2 DP~~~~~--~~~yy~~~t~~~~~~-----~~-~~~~~~~~~v~~S~Dl~~W~~~g~~l~~~~~~----~~~~~~~wAP~i 69 (274)
T cd08990 2 DPAAHVF--NGRVYIYTSHDEAGG-----GG-DDFCMNDYHVFSSPDLVNWTDHGVILSVTDFP----AWAKGQAWAPDV 69 (274)
T ss_pred CCCcEEE--CCEEEEEeCCCCCCC-----CC-CccccceEEEEECCCCCCcEECcccccCCCCC----ccccCCcCcCeE
Confidence 6778875 599999999764211 00 01245789999999999999999999865443 123577999999
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC-----CCCCCccCceEEEcCCCcEEEEEEecCCCcE
Q 012300 232 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-----PHGFDSRDMTIFKDDDGVAYLVYSSEDNSEL 306 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-----p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i 306 (466)
++ .+|+|||||++... ....+|+||+|++|+|||++.+... +.+...|||++|+|+||++||+|++. ..+
T Consensus 70 ~~--~~g~yy~yy~~~~~-~~~~~igva~s~~p~Gpw~~~~~~~~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~~--~~~ 144 (274)
T cd08990 70 VE--KNGKYYLYFPARDK-DGGFAIGVAVSDSPAGPFKDAGGPILITTPSGGWYSIDPAVFIDDDGQAYLYWGGG--LGL 144 (274)
T ss_pred EE--ECCEEEEEEEeecC-CCceEEEEEEeCCCCCCCCCCCCccccccCCCCCCccCCcEEECCCCCEEEEECCc--CCE
Confidence 98 78999999998753 2457899999999999999875432 23567899999999999999999864 478
Q ss_pred EEEEcCCCCCCccccEEEee--------cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCCCCceeCCCcc
Q 012300 307 HIGPLTSDYLDVSNVVRRIL--------VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMGPWEDMGNPC 377 (466)
Q Consensus 307 ~i~~Ls~D~~~~~g~~~~i~--------~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~GPw~~~gnPi 377 (466)
.+++|++|+++++++...+. .....|||.|+|++|+|||+||.+. .+.+. ++|++|+|||+..+.++
T Consensus 145 ~~~~l~~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k~~G~YYl~yS~~~----~~~~~~a~s~~p~GP~~~~g~~~ 220 (274)
T cd08990 145 RVAKLKPDMLSLKGEPVEIVITDGAGDELRRFFEAPWVHKRNGTYYLSYSTGD----PEEIAYATSDSPLGPFTYRGVIL 220 (274)
T ss_pred EEEEeCccccccCCCcEEEEeccccCCCCCCcccceeEEEECCEEEEEEECCC----CcEEEEEEcCCCCCCcccCcEEe
Confidence 99999999999988766553 2357899999999999999999754 24444 58999999999887655
Q ss_pred ccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCee-EEEEEEEcC
Q 012300 378 IGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 378 ~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~~ 432 (466)
.. + ...+.+|+++++.+| +|||+||..-...+....|. .+.||.|++
T Consensus 221 ~~-~-----~~~g~gh~~~~~~~g--~~y~~yh~~~~~~~~~~~R~~~~~~~~w~~ 268 (274)
T cd08990 221 DP-P-----VNGGTNHGSIVEFKG--QWYLFYHRATLSGGGDFRRSVCIDELEYNA 268 (274)
T ss_pred cC-C-----CCCCCCCCeEEEECC--eEEEEEECCcCCCCCCcceeEEEEEEEECC
Confidence 32 1 223445556777766 78998886544433455676 457999975
No 7
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=100.00 E-value=9.8e-40 Score=323.75 Aligned_cols=258 Identities=19% Similarity=0.220 Sum_probs=184.5
Q ss_pred CeEE---eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQ---AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~---ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||+ .+||.|++. +++||+++|... .++++.|++|+||+||+..+.++......+......
T Consensus 1 NPvi~~~~~DP~ii~~--~~~yY~~~t~~~--------------~~~g~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~ 64 (269)
T cd08989 1 NPILKGDNPDPSIIRA--GDDYYMASSTFE--------------WFPGVQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPY 64 (269)
T ss_pred CCcCCCCCCCCcEEEE--CCeEEEEECccc--------------cCCCcEEEECCccCCCEEccccccCccccccccCCC
Confidence 4553 379999986 589999987532 246799999999999999999887543321111112
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecC
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
...+|||+|++ .+|||||||++... ....+|+||+|++|+|||++... ....+|||++|+|+||+.||+|+++
T Consensus 65 ~~~~WAP~v~~--~~G~yy~yy~~~~~-~~~~~i~va~sd~~~Gpw~~~~~---~~~~~IDp~~f~D~dG~~Yl~~~~~- 137 (269)
T cd08989 65 SGGIWAPCLSY--YDGKFWLIYTAVKV-WKDCHNYLFTAEDITGPWSRPIF---LNYGGFDPSLFHDDDGKKYLINMGW- 137 (269)
T ss_pred CCcEEcceEEE--ECCEEEEEEecccc-CCCceEEEEEECCCCCCCcCCEE---CCCCcccCceEEcCCCCEEEEecCC-
Confidence 45699999998 79999999998643 24578999999999999997432 1236899999999999999999865
Q ss_pred CCcEEEEEcCCCCCCccccEE--Eeec---CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeC-CCc
Q 012300 303 NSELHIGPLTSDYLDVSNVVR--RILV---GQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM-GNP 376 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g~~~--~i~~---g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~-gnP 376 (466)
+.|++++|++|...+.++.. .+.. ....|||+|+|++|+||||||.......+...+++|++|+|||+++ +||
T Consensus 138 -~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~G~YYl~~S~~~~~~~~~~~~~rs~~~~GP~~~~~~~p 216 (269)
T cd08989 138 -SGIRLQEYSPAEKKLIGKPLNKVIIKGTDDGLTEGPHLYKINGKYYLTTAEGGTGYIHEETIARSDKIHGPYEGRPDNP 216 (269)
T ss_pred -CcEEEEEEChhhCCCCCCceeEEEecCCCCCccccceEEEECCEEEEEEeeCCCCCCeeEEEEEECCCCCCCCcCCCCc
Confidence 57999999999887766543 2322 3579999999999999999996433333334456899999999998 568
Q ss_pred cccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCee-EEEEEEEc
Q 012300 377 CIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRY-IWLPLIVR 431 (466)
Q Consensus 377 i~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~ 431 (466)
++..... .....+.+|++|++. +| +||++||.. ........|. .+.||.|.
T Consensus 217 l~~~~~~-~~~~~g~GH~s~v~~~~G--~~~~~~h~~-~~~~~~~gR~~~l~~i~W~ 269 (269)
T cd08989 217 LVLWDTP-GNPLQKCGHASLVETPDG--KWYLAHLTG-RPGFCPLGRETALQPIEWE 269 (269)
T ss_pred ceeecCC-CCCcccCCCcCeEECcCC--CEEEEEEee-CCCCCccCcceEEEEEEeC
Confidence 6432100 012234455566654 45 588888753 3322334466 56888873
No 8
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=100.00 E-value=5.6e-39 Score=320.25 Aligned_cols=248 Identities=21% Similarity=0.247 Sum_probs=183.4
Q ss_pred CCeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccC
Q 012300 145 GAPIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLY 221 (466)
Q Consensus 145 GnpI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~ 221 (466)
.|||+. +||+|+++ +++|||++|... ...++.||+|+||+||+.++.+++..
T Consensus 7 ~nPv~~~~~~DP~i~~~--~~~yY~~~t~~~--------------~~~gi~i~~S~DL~~W~~~g~~~~~~--------- 61 (280)
T cd09002 7 RNPILAGDYPDPSILRD--GEDYYMTHSSFK--------------YTPGLVIWHSRDLVNWTPVGPALPEY--------- 61 (280)
T ss_pred eCCccCCCCCCCEEEEE--CCEEEEEEcchh--------------cCCCEEEEECCCcCCceEccccccCC---------
Confidence 567753 69999986 589999887421 23579999999999999999887642
Q ss_pred CCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEec
Q 012300 222 KLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 222 ~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
.+.+|||+|++ ++|||||||++...+ ...+|+||+|++|+|||++..... ...+|||+||+|+||+.||+|+
T Consensus 62 -~~~~WAP~i~~--~~gkyy~yys~~~~~-~~~~~~va~ad~p~Gpw~~~~~~~--~~~~IDp~vf~DddG~~Yl~~~-- 133 (280)
T cd09002 62 -EGDVWAPDLCK--YDGRYYIYFPAIPEG-GNWTNMVIWADSPEGPWSKPIDLK--IGGCIDPGHVVDEDGNRYLFLS-- 133 (280)
T ss_pred -CCCEEcCeeEE--ECCEEEEEEEeecCC-CCceEEEEEECCCCCCCcCCEecC--CCCccCCceEEcCCCCEEEEEC--
Confidence 24589999997 899999999987543 357899999999999999753211 1236999999999999999996
Q ss_pred CCCcEEEEEcCCCCCCccccEEEeec-----------CceeeeeEEEEECCEEEEEEeCCCCCCCC--cEE-EEEeCCCC
Q 012300 302 DNSELHIGPLTSDYLDVSNVVRRILV-----------GQHREAPALFKHLGTYYMVTSGCTGWAPN--EAL-VHAAESIM 367 (466)
Q Consensus 302 ~n~~i~i~~Ls~D~~~~~g~~~~i~~-----------g~~~EgP~ifK~~G~YYL~yS~~tg~~~n--~~v-~~~Sds~~ 367 (466)
.+.+++|++|+++++|+...+.. +..+|||+|+|++|+||||||.+.++.++ +.+ +++|++|+
T Consensus 134 ---~~~~~~l~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~YYl~yS~g~~~~~~~~~~v~~ars~s~~ 210 (280)
T cd09002 134 ---GGDRVRLTADGLSTDGKLEHVYDGWRYPEDWVVEGFALEGPKLKKRNGYYYLTTAVGGTAGPPTGHMVVAARSKSVH 210 (280)
T ss_pred ---CeeEEEECccccEecCcCEEEecCcccccccccCCcccccceEEEECCEEEEEEccCCCCCCCCCEEEEEEECCCCC
Confidence 35678999999998887665543 23589999999999999999954333332 334 45899999
Q ss_pred CCceeC-CCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCeeE-EEEEEEcC
Q 012300 368 GPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRYI-WLPLIVRG 432 (466)
Q Consensus 368 GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~~~~~~R~v-~lPl~~~~ 432 (466)
|||++. ++|++..... ...-.+.+|++|+.. +| +||++||..- .......|.+ ..||+|++
T Consensus 211 GP~~~~~~~pi~~~~~~-~~~~~g~GH~~i~~~~~g--~~~~vyH~~~-~~~~~~gR~~~l~~l~w~~ 274 (280)
T cd09002 211 GPWENSPYNPLVRTQSP-QEPWWSKGHATLVDGPDG--QWWMVYHAYE-KGYLTLGRQTLLEPIEWTE 274 (280)
T ss_pred CCCccCCCCcEEecCCC-CCCceeCCCCcEEECCCC--CEEEEEEeec-CCCCCCCcEEEEEEEEECC
Confidence 999998 6888864210 011124556667765 44 7888887542 2222334765 58999975
No 9
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=100.00 E-value=6.4e-39 Score=320.28 Aligned_cols=258 Identities=19% Similarity=0.238 Sum_probs=188.9
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeec
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 229 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP 229 (466)
..||.|++. +|+||++.|... ...+|.|++|+||++|+.++.+|.........+......+|||
T Consensus 8 ~~DP~i~~~--~~~yy~~~t~~~--------------~~~~i~~~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP 71 (288)
T cd09000 8 YPDPSICRV--GDDYYLVTSSFE--------------YFPGVPIFHSKDLVNWELIGHALTRPSQLDLDGLPDSGGIWAP 71 (288)
T ss_pred CCCCCEEEE--CCEEEEEECCcc--------------cCCCceEEECCCcCCcEEcccccCCcccccccCCCCCCceEcc
Confidence 358899986 489999976321 1357999999999999999999875443211111235679999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecC-------
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSED------- 302 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~------- 302 (466)
+|++ .+|+|||||++.... ...+++||+|++|+|||++.... ...+|||+||+|+||+.||+|+++.
T Consensus 72 ~v~~--~~g~yy~yy~~~~~~-~~~~~~v~~s~~p~gpw~~~~~~---~~~~iDp~vf~d~dG~~Y~~~~~~~~~~~~~~ 145 (288)
T cd09000 72 TIRY--HDGTFYLITTNVDGM-KDGGNFIVTADDPAGPWSDPVWL---DSGGIDPSLFFDDDGKVYLVGNGWDERRGYNG 145 (288)
T ss_pred eEEE--ECCEEEEEEEecCCC-CCCceEEEEeCCCCCCCcCCEec---CCCccCCceeEcCCCCEEEEecccCCccccCC
Confidence 9998 689999999987533 34689999999999999964321 2278999999999999999999753
Q ss_pred CCcEEEEEcCCCCCCccccEEEeecC---ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCCCCceeC-CCcc
Q 012300 303 NSELHIGPLTSDYLDVSNVVRRILVG---QHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMGPWEDM-GNPC 377 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g~~~~i~~g---~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~GPw~~~-gnPi 377 (466)
.+.|++++|++|+.++.+++..+..+ .+.|||+|+|++|+||||||.+.. ..++.+. ++|++|+|||+++ ++|+
T Consensus 146 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~g~YYl~ys~~~~-~~~~~v~~~~s~~~~Gp~~~~~~~~i 224 (288)
T cd09000 146 HGGIWLQEIDLETGKLLGEPKVIWNGTGGRWPEGPHLYKRDGWYYLLIAEGGT-GYGHSVTVARSRSITGPYEPAPNNPI 224 (288)
T ss_pred CCcEEEEEEccccCCCCCCcEEEEeCCCCCCcccCeEEEECCEEEEEEecCCC-CCCeEEEEEEeCCCCCCCccCCCCce
Confidence 25799999999988888877666543 589999999999999999996432 2235554 5899999999986 6787
Q ss_pred ccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCC---CCCCCee-EEEEEEEcC
Q 012300 378 IGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPA---DLRESRY-IWLPLIVRG 432 (466)
Q Consensus 378 ~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~---~~~~~R~-v~lPl~~~~ 432 (466)
+.........-.+.+|++|++. +| +||++||.+-... .....|. ...+|.|++
T Consensus 225 l~~~~~~~~~~~g~gH~~~~~~~dG--~~~~~yH~~~~~~~~~~~~~~R~~~i~~~~~~~ 282 (288)
T cd09000 225 LTNRDLPDSPIQATGHADLVQTPDG--EWWAVFLATRPYGGKGFCPLGRETFLAPVTWEE 282 (288)
T ss_pred EEcCCCCCCcceeCCccceEECCCC--CEEEEEEEEcCCCCCccCcCccccEEEEEEECC
Confidence 7542100112234556667766 44 7898888653322 1244576 468999985
No 10
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=100.00 E-value=5.8e-39 Score=317.91 Aligned_cols=261 Identities=27% Similarity=0.352 Sum_probs=194.8
Q ss_pred CeEE---eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQ---AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~---ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||. .+||.|++. +++||||+|.... ..+|.|++|+||+||+.++.++......+. ..
T Consensus 3 NPv~~~~~~DP~i~~~--~~~yY~~~t~~~~--------------~~~i~v~~S~DL~~W~~~g~~~~~~~~~~~---~~ 63 (286)
T PF04616_consen 3 NPVIDGDYADPSIVRF--GDGYYLYGTTDPE--------------GPGIPVWSSKDLVNWTDAGNVLPPPPDWDW---AN 63 (286)
T ss_dssp SSSBTSSECSEEEEEE--TTEEEEEEEEBTC--------------ESBEEEEEESSSSSEEEEEECESSTTTTST---TT
T ss_pred CCccCCCCCCCEEEEE--CCEEEEEEEcCCC--------------CCeEEEEECCCCcccccceeeecccccccc---cc
Confidence 5664 379999986 4779999987531 267999999999999999998887654321 11
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecC
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
....|||+|++ .+|+|||||+.... ....+|+||+|++|+|||+........+..+|||+||+|+||+.||+|+++.
T Consensus 64 ~~~~WAP~i~~--~~g~yy~y~~~~~~-~~~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~ 140 (286)
T PF04616_consen 64 NGNIWAPEIHY--INGKYYMYYSDSGG-DAGSGIGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWD 140 (286)
T ss_dssp SETTEEEEEEE--ETTEEEEEEEEEST-STTEEEEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEEST
T ss_pred cccccCCeEEE--cCCeEEEEEEccCC-CCCcceeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccC
Confidence 22239999997 79999999993322 2457899999999999999876433236789999999999999999999875
Q ss_pred C----CcEEEEEcCCCCCCccccE-EEeec------CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCCCCc
Q 012300 303 N----SELHIGPLTSDYLDVSNVV-RRILV------GQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMGPW 370 (466)
Q Consensus 303 n----~~i~i~~Ls~D~~~~~g~~-~~i~~------g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~GPw 370 (466)
+ +.|.+++|++|+..+.++. ..+.. ....|||+|+|++|+|||+||+.....+ |.+. ++|++|+|||
T Consensus 141 ~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~yYl~~s~~~~~~~-y~v~~~~s~~~~gp~ 219 (286)
T PF04616_consen 141 NGDPGGGIYIAELDPDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHGGKYYLFYSAGGTGSP-YQVGYARSDSPLGPW 219 (286)
T ss_dssp TTSSEEEEEEEEEETTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEETTEEEEEEEESGSSTT-TEEEEEEESSTTSGG
T ss_pred CCccceeEEeecccCccccccCcccccccccccccCCccccceEEEEcCCCEEEEEeccCCCCC-ceEEEeeccCCCCce
Confidence 4 3699999999999988876 43333 2489999999999999999996554444 6555 5899999999
Q ss_pred eeC-CCccccC-CccceeeccCCCceEEEcccCCcccEEEEEeEeC-CCCCCCCee-EEEEEEEcC
Q 012300 371 EDM-GNPCIGG-NKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWN-PADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 371 ~~~-gnPi~~~-~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~-~~~~~~~R~-v~lPl~~~~ 432 (466)
+.. +++++.. ... ....+.+|++|+..+.. +||++||.+-. .......|+ .+.||.|++
T Consensus 220 ~~~~~~~~~~~~~~~--~~~~g~gH~~~~~~~~g-~~~~~yh~~~~~~~~~~~~R~~~i~~v~~~~ 282 (286)
T PF04616_consen 220 EWKKGNPILFSRDGE--NGVYGPGHGSVFKDPDG-RWYIVYHARNPGGGGTGGGRSTRIQPVTWDA 282 (286)
T ss_dssp EETTTCBCEGTTBTT--SSCEEEEEEEEEEETTS-EEEEEEEEEETSTSTGTTCEEEEEEEEEEET
T ss_pred eeccCCeEEEeeccC--CccccCccCCEEECCCC-CEEEEEeeccCCCCCCCCCcEEEEEEEEECC
Confidence 987 5665442 111 34455566677766332 48988887665 233455676 568999986
No 11
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=100.00 E-value=8.9e-39 Score=316.89 Aligned_cols=246 Identities=19% Similarity=0.260 Sum_probs=178.3
Q ss_pred CCeEE---eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcc-----c
Q 012300 145 GAPIQ---AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETN-----E 216 (466)
Q Consensus 145 GnpI~---ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~-----~ 216 (466)
.|||+ .+||.|++. +|+||+|+|+.. .+++|.|++|+||+||+.++.+++..... +
T Consensus 3 ~NPv~~~~~~DP~v~~~--~~~yY~~~t~~~--------------~~~gi~v~~S~Dl~~W~~~g~~~~~~~~~~~~~~~ 66 (269)
T cd09001 3 TNPIIYADYPDPDVIRV--GDDYYMVSTTMH--------------YSPGAPILHSKDLVNWEIIGYVYDRLDDGDAYNLE 66 (269)
T ss_pred cCCccCCCCCCCeEEEE--CCEEEEEECCcc--------------cCCCCEEEEcccccCCeEccccccccccccccccc
Confidence 36664 379999986 489999998532 13679999999999999999988654321 1
Q ss_pred ccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEE
Q 012300 217 THDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYL 296 (466)
Q Consensus 217 ~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL 296 (466)
.........+|||+|++ .+|||||||++. ..+++||+|++|+|||++.+... .+|||+||+|+||+.||
T Consensus 67 ~~~~~~~~~~WAP~v~~--~~gkyy~yys~~-----~~~~~v~~a~~p~Gpw~~~~~~~----~~iDp~~f~D~dG~~Yl 135 (269)
T cd09001 67 NGGNAYGKGQWAPSLRY--HNGTFYVFFCTN-----TGGTYIYTADDPEGPWTKTALDG----GYHDPSLLFDDDGTAYL 135 (269)
T ss_pred ccCCCCCCCEECCceEE--ECCEEEEEEEec-----CCCeEEEEcCCCCCCCcCCCcCC----CcccCceEEcCCCCEEE
Confidence 10001235699999998 699999999985 24689999999999999865321 68999999999999999
Q ss_pred EEEecCCCcEEEEEcCCCCCCccccEEEeec-----CceeeeeEEEEECCEEEEEEeCCCCCCCCcEE-EEEeCCCCCCc
Q 012300 297 VYSSEDNSELHIGPLTSDYLDVSNVVRRILV-----GQHREAPALFKHLGTYYMVTSGCTGWAPNEAL-VHAAESIMGPW 370 (466)
Q Consensus 297 ~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~~-----g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v-~~~Sds~~GPw 370 (466)
+|++ ..|+++||++|++++.++...++. +..+|||+|+|++|+||||||+.. ...+.+ +++|++|+|||
T Consensus 136 ~~~~---~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~G~YYl~~S~~~--~~~~~~~~~~s~~~~GP~ 210 (269)
T cd09001 136 VYGG---GTIRLVELSPDLTGVGGKDQVIIDAGEEIGLGAEGSHLYKINGYYYIFNIAWG--GGGRTQTCLRSKSLTGPY 210 (269)
T ss_pred EeCC---CcEEEEEECcccCCcCCCceEEEeCCCccccccccCeEEEECCEEEEEEecCC--CCCceEEEEEeCCCCCCc
Confidence 9985 379999999999998766555543 258999999999999999999754 223444 46899999999
Q ss_pred eeCCCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCeeEEEEEEEcC
Q 012300 371 EDMGNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRYIWLPLIVRG 432 (466)
Q Consensus 371 ~~~gnPi~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~~~~~~R~v~lPl~~~~ 432 (466)
+... ++.... ....+.+|+++++. +| +||+++|+.. . ...++..+.||.|++
T Consensus 211 ~~~~--~~~~~~---~~~~~~gh~~~~~~~~G--~~~~~~~~~~-~--~~gR~~~~~~~~w~d 263 (269)
T cd09001 211 ESKV--VLEDGS---TGGNGPHQGGIVDTPDG--EWYFMLFQDR-G--AVGRIPHLAPVTWED 263 (269)
T ss_pred CCcc--eecCCC---CCCCCCCCEEEEECCCC--CEEEEEcCCC-C--CCCCEEEEEEEEEEC
Confidence 9863 332111 12233444556655 45 5666665422 1 122334668999973
No 12
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=100.00 E-value=3.2e-38 Score=313.58 Aligned_cols=258 Identities=23% Similarity=0.290 Sum_probs=193.0
Q ss_pred CeEE---eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 012300 146 APIQ---AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 222 (466)
Q Consensus 146 npI~---ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~ 222 (466)
|||+ .+||+|++. +|+||||+|... ..++.+++|+||++|+.++.+|+..... ..
T Consensus 1 nPv~~~~~~DP~i~~~--~g~yy~~~t~~~---------------~~~i~~~~S~Dl~~W~~~g~~l~~~~~~-----~~ 58 (287)
T cd08999 1 NPVIDGDFPDPSVIRV--DGTYYAYATNGN---------------GPNVPIATSTDLVNWTYLGDAFPKLPRW-----WT 58 (287)
T ss_pred CCccCCCCCCCeEEEE--CCEEEEEEeCCC---------------CCcEEEEECCCCCCcEECCcccCCCCCc-----cc
Confidence 4554 479999986 599999999642 1468999999999999999988765432 23
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC----CCCCCccCceEEEcCCCcEEEEE
Q 012300 223 LNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR----PHGFDSRDMTIFKDDDGVAYLVY 298 (466)
Q Consensus 223 ~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~----p~g~~~iDp~vF~DdDG~~YL~~ 298 (466)
...+|||+|++ .+|+|||||++...+....+|++|+|++|.|||+..+... ..+...|||+||+|+||++||+|
T Consensus 59 ~~~~waP~v~~--~~g~y~~~y~~~~~~~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~Yl~~ 136 (287)
T cd08999 59 GGDFWAPDVSY--VNGKYVLYYSARDKGSGGQCIGVATADSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDTDGKRYLVW 136 (287)
T ss_pred CCCccCceEEE--ECCEEEEEEEeecCCCCCEEEEEEECCCCCCCCccCCcceEecCCCCCCccCCCeEECCCCCEEEEE
Confidence 56799999998 6799999999875433467899999999999999764321 23467899999999999999999
Q ss_pred EecCC-----CcEEEEEcCCCCCCccccEEEee------cCceeeeeEEEEECCEEEEEEeCCCCCCC--CcEEE-EEeC
Q 012300 299 SSEDN-----SELHIGPLTSDYLDVSNVVRRIL------VGQHREAPALFKHLGTYYMVTSGCTGWAP--NEALV-HAAE 364 (466)
Q Consensus 299 g~~~n-----~~i~i~~Ls~D~~~~~g~~~~i~------~g~~~EgP~ifK~~G~YYL~yS~~tg~~~--n~~v~-~~Sd 364 (466)
++..+ ..+++++|++|++.+.++...++ .+..+|||.|+|++|+|||+||....... +|.+. ++|+
T Consensus 137 ~~~~~~~~~~~~i~~~~ls~d~~~~~~~~~~i~~~~~~~~~~~~EgP~i~k~~g~yyl~~S~~~~~~~~~~y~i~~~~s~ 216 (287)
T cd08999 137 KSDGNSIGKPTPIYLQELSADGLTLTGEPVRLLRNDEDWEGPLVEAPYLVKRGGYYYLFYSAGGCCSGASTYAVGVARSK 216 (287)
T ss_pred eccCCCCCCCceEEEEEeCCCCccccCCcEeeecccccccCCceEeeEEEEECCEEEEEEEcCCccCCCCCEEEEEEEeC
Confidence 97532 13889999999998887765553 23579999999999999999997543333 57665 4899
Q ss_pred CCCCCceeC-CCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCeeE-EEEEEEc
Q 012300 365 SIMGPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRYI-WLPLIVR 431 (466)
Q Consensus 365 s~~GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~~~~~~R~v-~lPl~~~ 431 (466)
+|+|||+++ ++|+...+.. ....+.+|++++.. +| +||++||.+..+......|++ +.||.|+
T Consensus 217 ~~~Gpw~~~~~~~~~~~~~~--~~~~g~gh~~~~~~~~g--~~~~~yh~~~~~~~~~~~R~~~i~~~~~~ 282 (287)
T cd08999 217 SLLGPYVKAPGPPLLTSSGN--GRWVGPGHNTVVTDDDG--RDWLLYHAWDKADSGFTGRQMYLDRLEWE 282 (287)
T ss_pred CCcCCcCCCCCCcceeccCC--CeEEcCCCCeEEECCCC--CEEEEEEEEcCCCCCCCCceEEEEEEEeE
Confidence 999999998 4566542111 22334445455554 45 689999877665434455664 5799994
No 13
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=100.00 E-value=6.5e-38 Score=313.19 Aligned_cols=255 Identities=27% Similarity=0.355 Sum_probs=194.6
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
||+|++++ |+||||+|.... ..++.+++|+||++|+.++.++...+..| ....+|||+|
T Consensus 2 DP~v~~~~--g~yyl~~t~~~~--------------~~~i~~~~S~Dl~~W~~~~~~~~~~~~~~-----~~~~~waP~v 60 (294)
T cd08991 2 DPFVLRYN--GKYYAYGTGGAD--------------GRGFAVYSSPDLVDWKLHGGALLALDDDW-----GRRGFWAPEV 60 (294)
T ss_pred CCeEEEEC--CEEEEEEeCCCC--------------CCeeEEEECCCCCCceECCccccCCCCCc-----cCCcEEccEE
Confidence 68899874 899999986431 24699999999999999999887654433 3467999999
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc-CCCCCCccCceEEEcCCCcEEEEEEecCC----CcE
Q 012300 232 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK-RPHGFDSRDMTIFKDDDGVAYLVYSSEDN----SEL 306 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~-~p~g~~~iDp~vF~DdDG~~YL~~g~~~n----~~i 306 (466)
++ .+|+|||||++...+....+|+||+|++|+|||+..+.. ...+..+|||+||+|+||++||+|+...+ +.|
T Consensus 61 ~~--~~g~yyl~ys~~~~~~~~~~i~~a~s~~p~gp~~~~~~~~~~~~~~~iD~~vf~d~dG~~yl~~~~~~~~~~~~~i 138 (294)
T cd08991 61 YY--YNGKFYMYYSANDRDEKTEHIGVAVSDSPLGPFRDIKKPPIDFEPKSIDAHPFIDDDGKPYLYYSRNNYGNRVSDI 138 (294)
T ss_pred EE--ECCEEEEEEEeccCCCCcceEEEEEeCCCCCCCCcCCCCcccCCCcccCCceEECCCCCEEEEEEecCCCCcccce
Confidence 98 689999999987554456899999999999999986432 22345789999999999999999987532 358
Q ss_pred EEEEcCCCCCCccccEEEee---------------------cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE-EeC
Q 012300 307 HIGPLTSDYLDVSNVVRRIL---------------------VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVH-AAE 364 (466)
Q Consensus 307 ~i~~Ls~D~~~~~g~~~~i~---------------------~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~-~Sd 364 (466)
.+++|+.|++++.++...+. .....|||+|+|++|+|||+||++.....+|.+.+ +|+
T Consensus 139 ~~~~l~~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~~~~~~~y~~~~a~s~ 218 (294)
T cd08991 139 YGTELVDDKLSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHNGRYYLTYSANHYENEDYGVGYATAD 218 (294)
T ss_pred EEEEEccceeeeccceeeccccccccccccccccccccccccCceeeCcEEEEECCEEEEEEECCCCCCCCceEEEEEcC
Confidence 99999999988765543211 12479999999999999999997655556676654 799
Q ss_pred CCCCCceeC-CCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeE-EEEEEEcC
Q 012300 365 SIMGPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYI-WLPLIVRG 432 (466)
Q Consensus 365 s~~GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v-~lPl~~~~ 432 (466)
+|+|||++. ++||+..+.. ....+.+|++|++.++..++|++||.+..+.+. ..|++ ..||.|++
T Consensus 219 ~~~gp~~~~~~~pl~~~~~~--~~~~g~gh~~~~~~~~g~~~~~~yh~~~~~~~~-~~R~~~~~~~~~~~ 285 (294)
T cd08991 219 SPLGPWTKYSNNPILRRNGD--KGVEGTGHNSVVKSPDGGELYIVYHAHNATDEV-EPRTMRIDPLYFKD 285 (294)
T ss_pred CCCCCcEecCCCceEeeCCC--CceEeCCCCceEECCCCCEEEEEEeeecCCCCC-CCceEEEEEEEEcC
Confidence 999999997 7898875421 123566666777765323688888876655433 56765 58999986
No 14
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=100.00 E-value=3.2e-37 Score=307.86 Aligned_cols=257 Identities=21% Similarity=0.224 Sum_probs=186.7
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCccc-ccccCCCCeeee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNE-THDLYKLNVLER 228 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~-~~~~~~~~~iWA 228 (466)
+|||+|++.+ ++||||+|.. ++.+++|+||++|+.++.+|...+..+ ..+......+||
T Consensus 1 ~~DP~v~~~~--~~yyl~~t~~------------------~i~i~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~wA 60 (288)
T cd08998 1 VHDPSIIKEG--DTYYLFSTGN------------------GIAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPGGSGNLWA 60 (288)
T ss_pred CCCCeEEEEC--CEEEEEEcCC------------------CeEEEECCCCCCcEECCccccCCCccccccccCCCCCccC
Confidence 4899999874 7999998842 589999999999999999987654200 011224567999
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCC-CCCceeccccCC-----CCCCccCceEEEcCCCcEEEEEEecC
Q 012300 229 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYP-TGPFDYLYSKRP-----HGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 229 P~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP-~GPf~~~~~~~p-----~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
|+|++ .+|+|||||++........+|+||+|++| +|||++.+.... .+...|||+||+|+||+.||+|++..
T Consensus 61 P~v~~--~~g~yyl~ys~~~~~~~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~~~~~~ 138 (288)
T cd08998 61 PDVIY--LNGKYYLYYSVSTFGSNRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLSFGSFW 138 (288)
T ss_pred CeEEE--ECCEEEEEEEEEeCCCCceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEEeeecc
Confidence 99998 69999999998754434678999999999 999998653211 23468999999999999999999753
Q ss_pred CCcEEEEEcCCCCCCccc---cEEEeec----CceeeeeEEEEECCEEEEEEeCCCCC---CCCcEEE-EEeCCCCCCce
Q 012300 303 NSELHIGPLTSDYLDVSN---VVRRILV----GQHREAPALFKHLGTYYMVTSGCTGW---APNEALV-HAAESIMGPWE 371 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g---~~~~i~~----g~~~EgP~ifK~~G~YYL~yS~~tg~---~~n~~v~-~~Sds~~GPw~ 371 (466)
+.+.+++|++|...... ..+.+.. ....|||+|+|++|+||||||.+... ..+|.+. ++|++|+|||+
T Consensus 139 -~~i~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~Egp~~~k~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~ 217 (288)
T cd08998 139 -GGIFLVELDPKTGKPLYPGGYGYNIAGRPRGHGAIEAPYIIYRGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSITGPYV 217 (288)
T ss_pred -CCEEEEEeCcccCCccCCCCcceEEeccCCCCCceeeeEEEEeCCEEEEEEEcchhcCCCCCceEEEEEEcCCCCCCcC
Confidence 57999999998433222 2344443 34799999999999999999964322 3567665 58999999999
Q ss_pred eC-CCccccCCcc---c--eeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCee-EEEEEEEcC
Q 012300 372 DM-GNPCIGGNKV---F--RLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 372 ~~-gnPi~~~~~~---~--~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~~ 432 (466)
.. ++|++..... + ...-.+.+|++++..++ .+|||+||.+..+. ...|. .+.||.|++
T Consensus 218 ~~~g~~~~~~~~~~~~~~~~~~~~g~GH~~~~~~~~-g~~~~~yH~~~~~~--~~~r~~~i~~l~w~~ 282 (288)
T cd08998 218 DRNGNDMLNGGGTLYLLSSNGGYVGPGHNSVFTDDD-GKDYLVYHYYDAND--GGDHELRIRQLFWNE 282 (288)
T ss_pred CCCCCchhhCCCcceeeccCCeEEcCCCCEEEECCC-CCEEEEEEEEeCCC--CCccEEEEEEEEECC
Confidence 75 7887643210 0 01223445556665444 27899998776652 33465 568999975
No 15
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=100.00 E-value=9.5e-37 Score=302.47 Aligned_cols=233 Identities=20% Similarity=0.306 Sum_probs=170.1
Q ss_pred eCCceEEECCCCEEEEEEEeCCCC-CccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCccc-----c-cccCCC
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGP-TYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNE-----T-HDLYKL 223 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~-~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~-----~-~~~~~~ 223 (466)
|||.|++++ +|+|||++|..... .....+ ....+|.||+|+||+||+.++.|++..+... . ......
T Consensus 3 rDP~v~~~~-dg~Yy~~~T~~~~~~~~~~~~-----~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~ 76 (269)
T cd08986 3 RDTYVTLGP-DGYYYLTGTTPPPGLPFEDCS-----IVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYK 76 (269)
T ss_pred cCCeEEecC-CCcEEEEEccCCccccccccc-----cCCCceEEEeCccccCccccCcccccCCcccccccccccCCccc
Confidence 689999864 58999999975311 000000 1356899999999999999999987653211 0 011235
Q ss_pred CeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCC
Q 012300 224 NVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDN 303 (466)
Q Consensus 224 ~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n 303 (466)
+.+|||+|++ .+|+|||||++...+....+|+||+|++|+|||++..... ....+|||++|+|+||+.||+|++.
T Consensus 77 ~~~WAP~v~~--~~g~yyl~~s~~~~~~~~~~i~va~a~~p~Gp~~~~~~~~-~~~~~iD~~~f~D~DG~~Yl~~~~~-- 151 (269)
T cd08986 77 NAVWAPELHY--IKGRWYLVACMNNPGYGGSSILLSTSGKIEGPYKHITGNK-PLFPGIDPSLFEDDDGKVYLVWHNT-- 151 (269)
T ss_pred CCcCCceEEE--ECCEEEEEEEccCCCCCceEEEEEeCCCCCCCcEeccCCC-CCCCccCCceEEcCCCCEEEEeeCC--
Confidence 6799999998 7899999999875444467899999999999999864221 2246899999999999999999842
Q ss_pred CcEEEEEcCCCCCCccccEEEeec-------CceeeeeEEEEECCEEEEEEeCCC---CCCCCcEEE-EEeCCCCCCcee
Q 012300 304 SELHIGPLTSDYLDVSNVVRRILV-------GQHREAPALFKHLGTYYMVTSGCT---GWAPNEALV-HAAESIMGPWED 372 (466)
Q Consensus 304 ~~i~i~~Ls~D~~~~~g~~~~i~~-------g~~~EgP~ifK~~G~YYL~yS~~t---g~~~n~~v~-~~Sds~~GPw~~ 372 (466)
.+++|++|++++.++...+.. +..+|||+|+|++|+||||||... +-..+|.+. ++|++|+|||+.
T Consensus 152 ---~i~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~GPy~~ 228 (269)
T cd08986 152 ---LIARLKDDLSGLAGDPVRIDPSPTFYKDEIGHEGAFVFKYGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITGPYGA 228 (269)
T ss_pred ---ceEeccCccccccCCcEEEecccccccCCccccccEEEEECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCCCccc
Confidence 468999999988887766643 247999999999999999998531 223456654 589999999999
Q ss_pred CCCccccCCccceeeccCCCceEEEc-ccCCcccEEEEE
Q 012300 373 MGNPCIGGNKVFRLTTFFAQSTYVIP-LAGLPGLYIFMA 410 (466)
Q Consensus 373 ~gnPi~~~~~~~~~~t~~sq~~~v~~-~~G~~~~yi~~~ 410 (466)
...++.+ .+ |+.+++ .+| +||++||
T Consensus 229 ~~~~~~g---------~G--h~~~v~~~~G--~~~~~~h 254 (269)
T cd08986 229 RYFAGRF---------LG--HNTPFQDLDG--RWWCTAF 254 (269)
T ss_pred cCccccc---------cC--CCceEECCCC--CEEEEEE
Confidence 8665422 22 334554 444 5777776
No 16
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=100.00 E-value=5.5e-36 Score=300.88 Aligned_cols=233 Identities=16% Similarity=0.125 Sum_probs=172.5
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeec
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 229 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP 229 (466)
.+||+|++. +|+||+|+|... .||+|+||++|+.++.++. +..+|||
T Consensus 3 ~~DP~i~~~--~g~YY~~~T~~~-------------------~i~~S~DL~~W~~~g~~~~------------~~~~WAP 49 (295)
T cd08982 3 AADPVVILF--KGEYYLFASMSG-------------------GYWHSSDLIDWDFIPTNSL------------PDEGYAP 49 (295)
T ss_pred CCCCeEEEE--CCEEEEEEeCCC-------------------CeEECCCcCCceECCcccC------------CCCcCcC
Confidence 368999986 599999998521 2799999999999998753 2458999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCC-ceeccccCCCCCCccCceEEEcCCCcEEEEEEecCCCcEEE
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGP-FDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHI 308 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GP-f~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i~i 308 (466)
+|++ .+|+||++++.. .++||+|++|+|| |+.. .......+|||+||+|+||+.||+|++..++.|++
T Consensus 50 ~i~~--~~g~~Y~~~~~~-------~~~v~~s~~p~gp~w~~~--~~~~~~~~IDp~vf~DdDGk~Yl~~g~~~~~~i~~ 118 (295)
T cd08982 50 AVFV--YDGTLYYTASTY-------NSRIYKTADPLSGPWEEV--DKSFPPGLADPALFIDDDGRLYLYYGCSNNYPLRG 118 (295)
T ss_pred EEEE--ECCEEEEEEeCC-------CceEEEeCCCCCCCcccc--ccccCCCccCCceEECCCCCEEEEEecCCCCCeEE
Confidence 9998 789988776542 3568999999976 5543 11234568999999999999999998754567999
Q ss_pred EEcCCCCCCccccEEEeec--------------------CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCC
Q 012300 309 GPLTSDYLDVSNVVRRILV--------------------GQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIM 367 (466)
Q Consensus 309 ~~Ls~D~~~~~g~~~~i~~--------------------g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~ 367 (466)
+||++|+.++.|+...++. ..+.|||+|+|+||+|||+||....+...|.+. ++|++|+
T Consensus 119 ~eL~~d~~~~~g~~~~l~~~~~~~~~We~~g~~~~~~~~~~~~EGP~i~k~~G~YYL~yS~~~~~~~~Y~v~~a~s~~p~ 198 (295)
T cd08982 119 VEVDPDTFRPIGEPVELIPGNPDKHGWERFGENNDNPDKTPWMEGAWMTKHNGKYYLQYAAPGTEFNTYADGVYVSDSPL 198 (295)
T ss_pred EEECcccCCccCcceEEEeCCCCCcCeEecCcccccccCCccccccEEEEECCEEEEEEeCCCcccCcEeEEEEEeCCCC
Confidence 9999999888777665431 237899999999999999999754445567665 4899999
Q ss_pred CCceeC-CCccccCCccceeeccCCCceEEEc-ccCCcccEEEEEeEeCCCCCCCCee-EEEEEEEcC
Q 012300 368 GPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIP-LAGLPGLYIFMADRWNPADLRESRY-IWLPLIVRG 432 (466)
Q Consensus 368 GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~-~~G~~~~yi~~~d~w~~~~~~~~R~-v~lPl~~~~ 432 (466)
|||+.. ++||+.... ....+.+|+++++ .+| +||++|| ++...+....|. .+.||.|++
T Consensus 199 GP~~~~~~~pil~~~~---~~~~g~GH~s~v~~~~G--~~~~~yh-~~~~~~~~~~R~~~i~pv~~~~ 260 (295)
T cd08982 199 GPFTYQPHNPFSYKPG---GFITGAGHGSTFQDKYG--NYWHVGT-MTVSVKHGFERRIGLFPAFFDE 260 (295)
T ss_pred CCCCcCCCCccccCCC---CeEecCCcccEEECCCC--CEEEEEE-EECCCCCCCCceeEEEEEEECC
Confidence 999987 578875321 1123344445554 555 6777776 565533333454 678999976
No 17
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=100.00 E-value=8.2e-36 Score=291.86 Aligned_cols=255 Identities=28% Similarity=0.383 Sum_probs=188.8
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccC--CCcccccccCCCCeeee
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAA--EETNETHDLYKLNVLER 228 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~--~~~~~~~~~~~~~~iWA 228 (466)
|||+|++. +|+||||+|.... ...++.+++|+||++|+.++.++.. .... ......+||
T Consensus 1 ~DP~v~~~--~~~yyl~~t~~~~-------------~~~~i~i~~S~Dl~~W~~~~~~~~~~~~~~~----~~~~~~~wa 61 (271)
T cd08978 1 ADPYILRY--NGKYYLYGSTDDA-------------AGPGVQVWSSKDLVNWRYEGAVFVAWRGRGE----AKDSGGLWA 61 (271)
T ss_pred CCCcEEEE--CCEEEEEEecCCc-------------CCCcEEEEECCccCCcEECCcccccccccCC----cccCCceeC
Confidence 58899986 4799999996431 1357999999999999999998752 1111 123567999
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecc--ccCCCCCCccCceEEEcCCCcEEEEEEecC----
Q 012300 229 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLY--SKRPHGFDSRDMTIFKDDDGVAYLVYSSED---- 302 (466)
Q Consensus 229 P~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~--~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~---- 302 (466)
|+|++ .+|+|||||++...+....+|+||+|++|.|||+... ...+.+...|||+||+|+||++||+|++..
T Consensus 62 P~v~~--~~g~yyl~y~~~~~~~~~~~i~~a~s~d~~g~~~~~~~~~~~~~~~~~iDp~vf~d~dg~~yl~~~~~~~~~~ 139 (271)
T cd08978 62 PEVIY--YEGKYYLYYSVSDFDYNGSGIGVATSEDPTGPFEDKVIRPPTSNNGNSIDPTVFKDDDGKYYLYYGSGDPGAG 139 (271)
T ss_pred CeEEE--ECCEEEEEEEcccCCCCcccEEEEECCCCCCCccccccCcCccCCCCccCcceEEcCCCCEEEEEecccCCCC
Confidence 99998 6799999999875444467899999999999999642 122345678999999999999999999864
Q ss_pred CCcEEEEEcCCCCCCccccEEE----eecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEeCCCCCCceeCCCc-
Q 012300 303 NSELHIGPLTSDYLDVSNVVRR----ILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMGPWEDMGNP- 376 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g~~~~----i~~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~-~~Sds~~GPw~~~gnP- 376 (466)
++.|.+++|++|++...++... .......|||.|+|++|+|||+||....+...|.+. ++|++++|||+..+.+
T Consensus 140 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~~~~~~~y~~~~~~s~~~~Gp~~~~~~~~ 219 (271)
T cd08978 140 FGGIYISELTDDLTKPTGPPVLSASSGNNNAVTEGPTIFKKNGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNA 219 (271)
T ss_pred CCcEEEEEECcccccccCCceeeeeeccCCCceEccEEEEECCEEEEEEEeCCCCCCCceEEEEECCCCCCCcCcCCCCc
Confidence 4689999999999887666432 123457999999999999999999765434456665 4899999999998542
Q ss_pred --cccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEEEEEEE
Q 012300 377 --CIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIV 430 (466)
Q Consensus 377 --i~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v~lPl~~ 430 (466)
+..... ....+.+|+.|++.++ .++|++||.+-......+++.++.||.|
T Consensus 220 ~~~~~~~~---~~~~~~gh~~~~~~~~-g~~~~~yh~~~~~~~~~~r~~~~~~~~~ 271 (271)
T cd08978 220 GLESDSAG---FVGVGLGHGSVVRDKN-GEWYLVYHAYNANSDNPNRKLVINPLVW 271 (271)
T ss_pred ceEeccCC---CccccCCCceEEECCC-CCEEEEEEeecCCCCCCCceEEEEeccC
Confidence 222111 3456777888887763 2788888755433233455568888865
No 18
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=100.00 E-value=1.6e-33 Score=281.32 Aligned_cols=254 Identities=17% Similarity=0.225 Sum_probs=180.9
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 230 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~ 230 (466)
.||+|++.+ ++||+++|... +++.+++|+||++|+..+.++......+ ....+.+|||+
T Consensus 1 ~DP~v~~~~--d~yY~~~T~~~----------------~~~~i~~S~dl~~w~~~~~~~~~~~~~~---~~~~~~~WAP~ 59 (288)
T cd08980 1 ADPWVIRHD--GYYYFTATTGE----------------DRIELRRSDTLAGLATAESKVVWTPPDS---GPYSGNLWAPE 59 (288)
T ss_pred CCCeEEEEC--CEEEEEEEeCC----------------CcEEEEecCChhHhhcCCcEEEecCCCC---CCccccEECce
Confidence 378999874 69999998521 4699999999999998764432211111 12346799999
Q ss_pred EEEEccCCEEEEEEEEeCC-CCCcceEEEEEeCC---CCCCceeccccC-CCCCCccCceEEEcCCCcEEEEEEecCC--
Q 012300 231 VIYNDRTGKYVMWMHIDDC-NYTKAAVGVAISDY---PTGPFDYLYSKR-PHGFDSRDMTIFKDDDGVAYLVYSSEDN-- 303 (466)
Q Consensus 231 viyn~~~GkYyly~s~~~~-~~~~~~IGVA~Sds---P~GPf~~~~~~~-p~g~~~iDp~vF~DdDG~~YL~~g~~~n-- 303 (466)
|++ .+|+|||||++... ....++|+||+|++ |+|||++.+... +.+..+|||++|+| ||+.||+|+++..
T Consensus 60 i~~--~~g~yylyys~~~~~~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~~~~~iDp~~~~d-dG~~Yl~~~~~~~~~ 136 (288)
T cd08980 60 LHY--IDGKWYIYFAAGDGGGNANHRMYVLENAGADPPTGPWTFKGRLADPTDRWAIDGTVFEH-NGQLYFVWSGWEGRT 136 (288)
T ss_pred EEE--ECCEEEEEEEccCCCCCcceeEEEEEeCCCCCCCCCceEeeEeccCCCCeeeeeEEEEE-CCEEEEEEEccCCCC
Confidence 998 78999999998754 23467899999986 899999875432 33567899999997 4999999987642
Q ss_pred ---CcEEEEEcCCCCCCccccEEEeecC---------ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE-EeC---CCC
Q 012300 304 ---SELHIGPLTSDYLDVSNVVRRILVG---------QHREAPALFKHLGTYYMVTSGCTGWAPNEALVH-AAE---SIM 367 (466)
Q Consensus 304 ---~~i~i~~Ls~D~~~~~g~~~~i~~g---------~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~-~Sd---s~~ 367 (466)
..|.+++|++++. +.|+...+... ...|||+|+|++|+|||+||.......+|.+.+ +++ .|+
T Consensus 137 ~~~~~i~~~~l~~~~~-~~g~~~~i~~p~~~we~~~~~~~EgP~~~k~~G~yYl~yS~~~~~~~~Y~v~~a~~~~~~~~~ 215 (288)
T cd08980 137 NGNQNLYIAKMSNPWT-LTGPRVLISRPEYDWERQGPGVNEGPAALKRNGKVFLTYSASGSWTPDYCLGLLTADGGADLL 215 (288)
T ss_pred CCCccEEEEECCCCCc-cCCcceEecCCCCCceecCceeeECcEEEEECCEEEEEEECCCCCCCCCEEEEEEEcCCCCCC
Confidence 5799999998764 34665555432 468999999999999999997654456777764 565 357
Q ss_pred CC--ceeCCCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCeeE-EEEEEEcC
Q 012300 368 GP--WEDMGNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRYI-WLPLIVRG 432 (466)
Q Consensus 368 GP--w~~~gnPi~~~~~~~~~~t~~sq~~~v~~~-~G~~~~yi~~~d~w~~~~~~~~R~v-~lPl~~~~ 432 (466)
|| |++.++|++..+.. ..-.+.+|++|++. +| +++||+||.+-........|.+ ..||.|++
T Consensus 216 ~~~~~~~~~~pil~~~~~--~~~~g~GH~~iv~~~~G-~~~~~~yH~~~~~~~~~~~R~~~i~~v~~~~ 281 (288)
T cd08980 216 DPASWTKSPTPVFQSSPE--NGVYGPGHNSFTKSPDG-TEDWIVYHARPYPNGCGGNRHTRAQKVTWDA 281 (288)
T ss_pred ChhhCcCCCCCceecCCC--CccCcCCccceEECCCC-CEEEEEEccccCCCCCCCCceEEEEEEEECC
Confidence 77 77777888765431 12344555566654 44 2388888865543323445664 57999975
No 19
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=99.97 E-value=3e-29 Score=246.42 Aligned_cols=238 Identities=20% Similarity=0.223 Sum_probs=166.1
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccC---CCcccccccCCCCeee
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAA---EETNETHDLYKLNVLE 227 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~---~~~~~~~~~~~~~~iW 227 (466)
+||+|++. +|+||||.|..... ...++.+++|+||++|+.++.++.. ... ......+|
T Consensus 1 ~DP~i~~~--~g~yyl~~~~~~~~------------~~~~~~~~~S~Dl~~W~~~~~~~~~~~~~~~-----~~~~~~~w 61 (286)
T cd08772 1 ADPNLIKY--NGTYYIFFSGDDKN------------GNPGIAHATSKDLVNWTDHPVALVWWARRGG-----PKDSGGIW 61 (286)
T ss_pred CCCeEEEE--CCEEEEEEEccCCC------------CCceEEEEECCCcCcceECCccchhhcccCC-----CCCCCcEe
Confidence 47888876 49999999965310 2457999999999999999988751 111 12356799
Q ss_pred eceEEEEccC-CEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc--------CCCCCCccCceEEEcCCCcEEEEE
Q 012300 228 RPKVIYNDRT-GKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK--------RPHGFDSRDMTIFKDDDGVAYLVY 298 (466)
Q Consensus 228 AP~viyn~~~-GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~--------~p~g~~~iDp~vF~DdDG~~YL~~ 298 (466)
||+|++ .+ |+|||||++.......++|++|+|+++.+||+..... .......|||+||+|+||++||+|
T Consensus 62 ap~v~~--~~~g~~~l~yt~~~~~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~y~~~ 139 (286)
T cd08772 62 APSIVY--IENGKFYLYYTDVSFTKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGKWYLVF 139 (286)
T ss_pred cceEEE--cCCCCEEEEEEeecCCCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCCEEEEE
Confidence 999998 45 9999999987543346899999999999999965321 112356899999999889999999
Q ss_pred EecC---CCcEEEEEcCCCCCCccccEE-Ee---ecCceeeeeEEEEECCEEEEEEeCCCCC--CCCcEEEE-EeCCCCC
Q 012300 299 SSED---NSELHIGPLTSDYLDVSNVVR-RI---LVGQHREAPALFKHLGTYYMVTSGCTGW--APNEALVH-AAESIMG 368 (466)
Q Consensus 299 g~~~---n~~i~i~~Ls~D~~~~~g~~~-~i---~~g~~~EgP~ifK~~G~YYL~yS~~tg~--~~n~~v~~-~Sds~~G 368 (466)
++.. .+.|.++++++++........ .+ ..+...|||.|||++|+|||+||...+. ...|.+++ +|++++|
T Consensus 140 ~~~~~~~~~~i~~~~s~d~~~w~~~~~~~~~~~~~~~~~~E~P~~~~~~g~~yL~~s~~~~~~~~~~y~~~~~~~~~~~g 219 (286)
T cd08772 140 GSGDHHNFGGIFLYESDDDTTWKKGSAELLISEGEGGKQIEGPGLLKKNGKYYLFYSINGTGRVDSTYSIGYARSESDTG 219 (286)
T ss_pred ccccCCCCCeEEEEEcCCCCCcccccceeeEeeccCCCceeccEEEEECCEEEEEEEcCCCcCCCCCcceEEEEccCCCC
Confidence 9753 457999998877654333322 11 1246899999999999999999965432 33466654 7999999
Q ss_pred CceeCC-Cccc--cCCccceeeccCCCceEEEcccCCcccEEEEEeE
Q 012300 369 PWEDMG-NPCI--GGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADR 412 (466)
Q Consensus 369 Pw~~~g-nPi~--~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~ 412 (466)
||+... ++.. ..... ....+..|+.++..++ .++||++|-+
T Consensus 220 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-g~~~~~~~~~ 263 (286)
T cd08772 220 PYVPKSDTSGGLSLTGGN--DGGVGPYHAAAFNDAG-GRVVLVYHAY 263 (286)
T ss_pred CcccCCCCCCcccccccc--CCCCCCCccEEEECCC-CCEEEEEEec
Confidence 999873 3211 10000 1223344445554332 2678877743
No 20
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.97 E-value=2.2e-29 Score=252.62 Aligned_cols=257 Identities=18% Similarity=0.158 Sum_probs=180.5
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCC-cc-ccccccceeccCcEEEEEeCC-CCCCEEeceeccCCCcccccccCCCCee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPT-YH-AHKKAAARVDIIGVGCYSSKD-MWTWKNEGIVLAAEETNETHDLYKLNVL 226 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~-~~-~~~~g~~~~~~~gi~v~sS~D-Lv~W~~~g~vL~~~~~~~~~~~~~~~~i 226 (466)
++||.|++++++++||||.|+..... .. .+| .....|.+++|+| |++|+.++.++... ..| ....+
T Consensus 11 ~~DP~i~~~~~~~~~~~~yT~~~~~~~~~~~~w-----~~~~~i~~a~S~D~l~~W~~~g~~~~~~-~~~-----~~~~~ 79 (294)
T cd08984 11 AADPTIIYNRETKEWWMFYTNRRANVPTPGVAW-----VHGTDIGVASSKDGGATWTYRGTADGLE-FEC-----GRNTF 79 (294)
T ss_pred CCCCEEEEeCCCCEEEEEEccccCcCCCCCccc-----CcCceEEEEEeCCCCCCCEEeeeeccCC-CCC-----cccce
Confidence 47899999988899999999654211 10 122 1235799999999 99999999876542 222 34568
Q ss_pred eeceEEEEccCCEEEEEEEEeCCC----CCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecC
Q 012300 227 ERPKVIYNDRTGKYVMWMHIDDCN----YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 227 WAP~viyn~~~GkYyly~s~~~~~----~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
|||+|++ .+|+|||||++.... ....+|++|+|++. ++|+..+.....+...|||+||+++||++||+|++..
T Consensus 80 WAP~v~~--~~G~y~myys~~~~~~~~~~~~~~i~~a~S~Dl-~~w~~~~~~~~~~~~~iD~~vf~~~dg~~yl~y~~~~ 156 (294)
T cd08984 80 WAPEVVW--HGGVYHMYVTYIPGVPPDWGGPRRIVHYTSPNL-WDWTFVGRVDLDSDRVIDACVFKLPDGRWRMWYKDER 156 (294)
T ss_pred eCceEEE--ECCEEEEEEEecCCCCcccCCCcEEEEEECCCc-CcceECCccccCCCCcEEeEEEEeCCCEEEEEEECCC
Confidence 9999998 789999999986431 23578999999994 7899765432234568999999988899999998654
Q ss_pred CCcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeCCCccccCCc
Q 012300 303 NSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNK 382 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~gnPi~~~~~ 382 (466)
++......+++|+.+++..... +.....|||.|||++|+|||+++... ...+++|+++. +|++.+.++.....
T Consensus 157 ~~~~~~~a~s~D~~~w~~~~~~-i~~~~~EgP~v~k~~g~yym~~~~~~-----g~~~~~S~D~~-~W~~~~~~l~~~~~ 229 (294)
T cd08984 157 RGSTTYAADSEDLYHWTVEGPV-LGDRPHEGPNVFRWKGYYWMIIDEWK-----GLGVYRSKDAE-NWERQGGILLKPGT 229 (294)
T ss_pred CCeEEEEEECCCCCEEEeCCcc-ccCCCCCCCCeeEECCEEEEEEcCCc-----eEEEEECCChh-hcEECCeeeccCCC
Confidence 3333345578888887653322 22346799999999999999986421 23456899999 99999877664211
Q ss_pred cceeeccCCCceEEEcccCCcccEEEEEeEeCCCCC----------CCCeeEE-EEEEE
Q 012300 383 VFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADL----------RESRYIW-LPLIV 430 (466)
Q Consensus 383 ~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~----------~~~R~v~-lPl~~ 430 (466)
.. .....++|..|++.+| +|||+||.+-.++.. ..+|+|+ ..|.+
T Consensus 230 ~~-~~~~~~~H~~i~~~~~--~~y~~Yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (294)
T cd08984 230 RP-DDGAKGRHADVVVTGD--RAYIFYFTHPGREYEAEDDAADPYRYRRSSIQVAELEV 285 (294)
T ss_pred Cc-cccccccCCcEEEeCC--EEEEEEEecCCCcccccccccCchhheeeeEEEEEEEE
Confidence 00 1122336677887776 799999987665321 2344666 56877
No 21
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.1e-27 Score=248.69 Aligned_cols=215 Identities=21% Similarity=0.281 Sum_probs=163.4
Q ss_pred CCeEEe---eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCccccccc-
Q 012300 145 GAPIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDL- 220 (466)
Q Consensus 145 GnpI~a---hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~- 220 (466)
-|||.+ .|++|+++ +..|||-.+. +..++|+.++.|+||+||+.....|........+..
T Consensus 22 ~NPvl~gf~PDpSi~rv--g~dyYia~st--------------F~~fpGl~i~hS~DL~nW~~v~tpl~~~~~ld~kgn~ 85 (549)
T COG3507 22 LNPVLAGFNPDPSIVRV--GDDYYIATST--------------FEWFPGLAIHHSRDLVNWTLVSTPLIRTSQLDLKGNF 85 (549)
T ss_pred cCccccccCCCCceEec--CCceEEEcce--------------EEEcCceeeeccccccCcEEecccccCcchhhhhccc
Confidence 366665 68999986 5778887552 246889999999999999999987776554333332
Q ss_pred CCCCeeeeceEEEEccCCEEEEEEEEeC---CCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEE
Q 012300 221 YKLNVLERPKVIYNDRTGKYVMWMHIDD---CNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLV 297 (466)
Q Consensus 221 ~~~~~iWAP~viyn~~~GkYyly~s~~~---~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~ 297 (466)
..++.+|||+|.| ++|||||||+-.. ..+......+.++++++|||++... -.+.++|||++|.|+||+.||+
T Consensus 86 ~~S~giWAPdl~y--~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~G~WsDpi~--l~~~~~iDPslf~D~dGr~wlv 161 (549)
T COG3507 86 PYSGGIWAPDLSY--HDGKFWLYYTDVKRSGGPYKNAGNYLVTAESIDGPWSDPIK--LNGSNAIDPSLFFDKDGRKWLV 161 (549)
T ss_pred CCCCceeccceec--CCCcEEEEEecccccCCcccccccEEEEecCCCCCccccee--cCCcCccCCceeecCCCCEEEE
Confidence 3578899999998 9999999994321 2345677889999999999998642 2234689999999999999999
Q ss_pred EEecCCC-------cEEEEEcCCCCCCcccc-EEEeecC---ceeeeeEEEEECCEEEEEEeCCCCCCCCc-EEEEEeCC
Q 012300 298 YSSEDNS-------ELHIGPLTSDYLDVSNV-VRRILVG---QHREAPALFKHLGTYYMVTSGCTGWAPNE-ALVHAAES 365 (466)
Q Consensus 298 ~g~~~n~-------~i~i~~Ls~D~~~~~g~-~~~i~~g---~~~EgP~ifK~~G~YYL~yS~~tg~~~n~-~v~~~Sds 365 (466)
++++..+ .|.+.+.++-...+.|. ...++.| ...|||.++|++|+|||+.+.+.+-...+ .+++||++
T Consensus 162 ~~~w~~~~~~~~~~~i~l~~~~~~~~~l~g~~~~~~~~G~~~~~~EGPhl~k~~gYYYL~~a~gG~t~~gh~~~vaRSKs 241 (549)
T COG3507 162 NGSWDGGIFMHSFAGIILQEYDKTTQKLVGQGYKIIFDGGNGGLTEGPHLYKKTGYYYLYVAEGGLTTYGHAIRVARSKS 241 (549)
T ss_pred ecccCCCcccccccceeeeeccccccccCCccceeEeccCCCccccCceeeccCCEEEEEEEcCCCCccceeEEEEeccC
Confidence 9998644 46677776666666776 4445543 47999999999999999998543211123 34569999
Q ss_pred CCCCceeC-CCcccc
Q 012300 366 IMGPWEDM-GNPCIG 379 (466)
Q Consensus 366 ~~GPw~~~-gnPi~~ 379 (466)
|.|||+.. ++|++.
T Consensus 242 idGPYe~~~~~pllt 256 (549)
T COG3507 242 IDGPYEDHPGNPLLT 256 (549)
T ss_pred CCCCcccCCCCeeee
Confidence 99999988 889885
No 22
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.94 E-value=1.7e-25 Score=222.94 Aligned_cols=217 Identities=14% Similarity=0.182 Sum_probs=151.8
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 230 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~ 230 (466)
+||.|++.+++|+|||++|+..... +.....+|.+|+|+||++|+..+.++.... ....+|||+
T Consensus 19 rDP~I~r~~~~g~yy~~~T~~~~~~--------~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~--------~~~~~WAPe 82 (276)
T cd08983 19 RDPFILRSHEGGKYYMIATDLKITG--------QTNGSQYIVVWESTDLVNWTFQRLVKVNPP--------NAGNTWAPE 82 (276)
T ss_pred cCCeEEEcCCCCEEEEEEEecCcCC--------cccCCCeEEEEECCcccCCcccceeecCCC--------CcCcEeCcc
Confidence 6999999866899999999864211 012356899999999999999998863211 235689999
Q ss_pred EEEEccCCEEEEEEEEeCCC----CCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCCCcE
Q 012300 231 VIYNDRTGKYVMWMHIDDCN----YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSEL 306 (466)
Q Consensus 231 viyn~~~GkYyly~s~~~~~----~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i 306 (466)
|+|++.+|+|||||++...+ ....+|+++++.++ ..|+........+...||+++|+|+ |++||+|+.+.+..|
T Consensus 83 v~~d~~~g~y~~~~s~~~~~~~~~~~~~~i~~~tt~Df-~tft~p~~~~~~~~~~ID~~v~~~~-g~~Yl~~k~~~~~~i 160 (276)
T cd08983 83 AFWDAERGQYVVYWSSRLYDNTGGFYNYRLYATTTSDF-VTFTEPKVWIDLGANVIDTTVVKVG-GTYYRFYKNEGSKDI 160 (276)
T ss_pred ceEcCCCCeEEEEEecccCCCCCCCccEEEEEEecCcc-cccCCCeEeecCCCCeEeeEEEEeC-CEEEEEEecCCCCcE
Confidence 99988899999999987542 33567777777444 4677544333356789999999975 999999998765678
Q ss_pred EEEEcCCCCCCccccEEEee-----cCceeeeeEEEEECC--EEEEEEeCCCCCCCCcEEEEEeCCC-CCCceeCCCccc
Q 012300 307 HIGPLTSDYLDVSNVVRRIL-----VGQHREAPALFKHLG--TYYMVTSGCTGWAPNEALVHAAESI-MGPWEDMGNPCI 378 (466)
Q Consensus 307 ~i~~Ls~D~~~~~g~~~~i~-----~g~~~EgP~ifK~~G--~YYL~yS~~tg~~~n~~v~~~Sds~-~GPw~~~gnPi~ 378 (466)
.+++.+. +.|....+. .+...|||.|||.++ +|||+++...+ ..|.. ..++++ .|.|+.....-
T Consensus 161 ~~~~s~~----l~g~~~~~~~~~~~~~~~~EgP~v~k~~~~~~y~L~~d~y~~--~~Y~~-~~t~d~~~~~~~~~~~~~- 232 (276)
T cd08983 161 ELARSKS----LTGPWTIVGTGDAGWGGAVEGPTVFKLNNGGGWYLYGDNYSG--GGYYP-FDTSDLASTSWTKVALYG- 232 (276)
T ss_pred EEEEeCC----CCCCceEecccccCCCCceeCCeEEEECCCCEEEEEEEECCC--CCeEE-EEecCcCCCceecccccC-
Confidence 7777543 345444332 235799999999987 99999997542 22322 345555 56676432211
Q ss_pred cCCccceeeccCCCceEEEcccC
Q 012300 379 GGNKVFRLTTFFAQSTYVIPLAG 401 (466)
Q Consensus 379 ~~~~~~~~~t~~sq~~~v~~~~G 401 (466)
......|+.|+++.-
T Consensus 233 --------~~~~~rHg~v~~it~ 247 (276)
T cd08983 233 --------LPGNPRHGTVVPITA 247 (276)
T ss_pred --------CCCCCCcceEecCCH
Confidence 223456778999864
No 23
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=99.93 E-value=2.9e-24 Score=211.25 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=147.7
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCC-CcccccccCCCCeeeec
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAE-ETNETHDLYKLNVLERP 229 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~-~~~~~~~~~~~~~iWAP 229 (466)
-||.|++. +|+||+|+|..+.. ....+|+| |++|+.++.|+... .... ....+|||
T Consensus 25 kDPtiv~~--nGkYyvYgT~~~~~--------------~~~s~~~S--f~~Ws~~g~A~q~~l~~~~-----~~~~fwAP 81 (303)
T cd08987 25 KDPTVVYY--NGRYHVYATTADAG--------------NYGSMYFN--FTDWSQAASATQYYLQNGN-----MTGYRVAP 81 (303)
T ss_pred cCCeEEEE--CCEEEEEEccCCCC--------------Cceeeeec--ccCHhHhccchhhcccCCC-----CCcccccC
Confidence 46788875 49999999975421 12467888 99999999776411 0000 13458999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC-------CCCCCccCceEEEcCCCcEEEEEEecC
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-------PHGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-------p~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
+|+|-+.+++|||+|... .+.+++|++|+||+....... ..+...||+.| ++||+++||++.+.
T Consensus 82 qVfyf~pk~kwYL~Yq~~-------~~~yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~v-I~Dd~~~YLff~~d- 152 (303)
T cd08987 82 QVFYFAPQNKWYLIYQWW-------PAAYSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWV-ICDDTNCYLFFSDD- 152 (303)
T ss_pred EEeeeccCCEEEEEEecC-------ceEEEeCCCCCCCCccCCCcccccCcccCCCCCccceeE-EeCCCCEEEEEecC-
Confidence 999877889999999962 367999999999988432111 11235799999 68899999999865
Q ss_pred CCcEEEEEcCCC-CCCccccEEEeec----CceeeeeEEEEECC--EEEEEEeCCCCCCCCcEEEEEeCCCCCCceeC--
Q 012300 303 NSELHIGPLTSD-YLDVSNVVRRILV----GQHREAPALFKHLG--TYYMVTSGCTGWAPNEALVHAAESIMGPWEDM-- 373 (466)
Q Consensus 303 n~~i~i~~Ls~D-~~~~~g~~~~i~~----g~~~EgP~ifK~~G--~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~-- 373 (466)
|+.|+.++|+.+ .-...++...+.. ...+|||.|+|.+| +|||++++.......|.+.++|+||.|||++.
T Consensus 153 nG~iyra~~~~~nFp~~~~~~~~~~~~~~~~~lfEa~~Vykv~G~~~YlmiveA~g~~~~rYfrs~Ts~Sl~GpWt~~a~ 232 (303)
T cd08987 153 NGKLYRSSTTLGNFPNGGTETVIIMSDSNKNNLFEASNVYKVKGQNQYLLIVEAIGSDGGRYFRSWTATSLDGPWTPLAT 232 (303)
T ss_pred CCeEEEEecchhhCCCCCCccEEEecCCCccccceeeEEEEECCCeEEEEEEEecCCCCCCeEEEEEcCCCCCCceeccc
Confidence 679999999876 5444444444432 46899999999988 99999997643345677778999999999998
Q ss_pred --CCccccCC
Q 012300 374 --GNPCIGGN 381 (466)
Q Consensus 374 --gnPi~~~~ 381 (466)
.||+.+.+
T Consensus 233 ~e~nPfag~~ 242 (303)
T cd08987 233 TESNPFAGAN 242 (303)
T ss_pred ccCCCccccc
Confidence 47888763
No 24
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=99.87 E-value=2.1e-20 Score=185.71 Aligned_cols=203 Identities=18% Similarity=0.165 Sum_probs=139.5
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
|+..++. +|+||||.+...... .| ......+.+++|+||+||+.++.+|...+.. .....+|+|++
T Consensus 2 d~~~~~~--~G~yhlfyq~~p~~~---~~----~~~~~~wgha~S~Dlv~W~~~~~al~~~~~~-----~d~~g~~sgs~ 67 (280)
T cd08995 2 DPMPFYD--DGTFHIFYLHDPRNG---PP----EGLRHPWSLLTTKDLVNYEDHGEAIPRGGDE-----DDDDAIGTGSV 67 (280)
T ss_pred CccceEE--CCEEEEEEEcCCCCC---Cc----ccCCceEEEEEccCcCccEECcceecCCCCc-----ccccCceEeEE
Confidence 4556665 489999998754211 11 0134568999999999999999998764322 13467999999
Q ss_pred EEEccCCEEEEEEEEeCCC-CCcceEEEEEeCCCCCCceeccc--cC--CCC---CCccCceEEEcC-CCcEEEEEEecC
Q 012300 232 IYNDRTGKYVMWMHIDDCN-YTKAAVGVAISDYPTGPFDYLYS--KR--PHG---FDSRDMTIFKDD-DGVAYLVYSSED 302 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~~-~~~~~IGVA~SdsP~GPf~~~~~--~~--p~g---~~~iDp~vF~Dd-DG~~YL~~g~~~ 302 (466)
+. .+|+|||||++.... ...++|++|+|+++ .+|+.... .. +.+ ...+||.||.|+ +|++||++++..
T Consensus 68 ~~--~~g~~~l~YTg~~~~~~~~~~i~~A~S~D~-~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~ 144 (280)
T cd08995 68 IK--GEGTYHAFYTGHNLDGKPKQVVMHATSDDL-ITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRL 144 (280)
T ss_pred Ee--eCCEEEEEEEEECCCCCCcEEEEEEECCCC-CccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEecc
Confidence 97 679999999986432 23578999999997 68886532 11 222 347899999985 799999998642
Q ss_pred -----CCcEEEEEc-CCCCCCcccc--EEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeC
Q 012300 303 -----NSELHIGPL-TSDYLDVSNV--VRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM 373 (466)
Q Consensus 303 -----n~~i~i~~L-s~D~~~~~g~--~~~i~~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~ 373 (466)
+....|..+ ++|+.+++-. ......+...|+|.||+.+|+|||+||... ......+++++++.|||+..
T Consensus 145 ~~~~~~~~g~i~~~~S~Dl~~W~~~~~~~~~~~~~~~E~P~l~~~~g~~~L~~s~~~--~~~~~~Y~~~~~~~g~~~~~ 221 (280)
T cd08995 145 LDGPYNRRGCIALFTSKDLKNWEYEEPFYAPGLYFMPECPDLFKMGDWWYLVYSEFS--ENRKTHYRVSKSPFGPWRAP 221 (280)
T ss_pred CCCCCCCCeEEEEEEeCCcCcceecCceecCCCcceeecceEEEECCEEEEEEEecc--CCCcEEEEEeCCCCCCeEcC
Confidence 122233333 6788776532 111112346899999999999999999653 22233444788999999765
No 25
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.87 E-value=2.8e-20 Score=189.79 Aligned_cols=203 Identities=21% Similarity=0.315 Sum_probs=129.5
Q ss_pred CeEEeeCCc-eEEECCCCEEEEEEEeCCCCC--ccccccccce--eccCcEEEEEeCCCCCCEEeceeccCCCccccccc
Q 012300 146 APIQAHGGG-ILYDERSRTYFWYGEYKDGPT--YHAHKKAAAR--VDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDL 220 (466)
Q Consensus 146 npI~ahd~~-Ii~~~~~g~YYlygT~~~~~~--~~~~~~g~~~--~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~ 220 (466)
.+|...||+ |++. +|+|||+.|.....+ +..+...... .....|.+++|+||++|+.++.+|...+.. .
T Consensus 33 ~~i~r~dP~~Vi~~--~g~Y~mwYs~~~~~~~~~~~~~~~~~~~~w~~y~I~~A~S~Dgv~W~~~g~~L~~~~~g----~ 106 (349)
T cd08992 33 EGVHRRDPSSVIKV--DGLYHVWYTKSEGETDGFGTGDPEAKVFPWDKCEIWHATSKDGWTWKEEGPAIGRGEKG----A 106 (349)
T ss_pred cCeecCCCceEEEE--CCEEEEEEEecCCcccccccCCccccccCCCceEEEEEECCCCCCceECCccccCCCCC----C
Confidence 345566774 8875 599999877542100 0000000000 013457789999999999999888654321 1
Q ss_pred CCCCeeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEE
Q 012300 221 YKLNVLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLV 297 (466)
Q Consensus 221 ~~~~~iWAP~viyn~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~ 297 (466)
++...+|||+|++ .+|+|||||++.... ....+||||+|++|.|||++... |.-...-|...+.|+||
T Consensus 107 Wd~~~vwaP~Vi~--~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWtr~d~--Pil~p~~dg~w~~d~~~----- 177 (349)
T cd08992 107 YDDRSVFTPEVLE--HEGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWTKSDE--PILSPSNDGIWKGDEDN----- 177 (349)
T ss_pred ccccceECcEEEE--ECCEEEEEEEecccccCCCCcceEEEEEECCcccccccCCC--cEecCCcCCceeeccCc-----
Confidence 2467799999996 899999999864321 12468999999999999997532 21001123334444333
Q ss_pred EEecCCCcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCC-C----C-CCCcEEE-EEeCCCCCCc
Q 012300 298 YSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCT-G----W-APNEALV-HAAESIMGPW 370 (466)
Q Consensus 298 ~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~t-g----~-~~n~~v~-~~Sds~~GPw 370 (466)
..++++..++.+ ..+|+|.|++++|+|||+|++.. + + ..++.++ ++|++|+|||
T Consensus 178 --------~~~~~~~g~wD~-----------~~v~~P~v~~~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~GPf 238 (349)
T cd08992 178 --------RFLVKKKGSFDS-----------HKVHDPCLFPFNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPEGPY 238 (349)
T ss_pred --------eeEeccCCCccc-----------CceECCEEEEECCEEEEEEEccccCcccccCCCCceEEEEEECCCCCCC
Confidence 123333333332 24799999999999999998753 1 1 1245565 4799999999
Q ss_pred eeC-CCccccCCc
Q 012300 371 EDM-GNPCIGGNK 382 (466)
Q Consensus 371 ~~~-gnPi~~~~~ 382 (466)
++. .|||+....
T Consensus 239 ~r~~~nPi~~~~~ 251 (349)
T cd08992 239 VKSPYNPITNSGH 251 (349)
T ss_pred EeCCCCcccCCCC
Confidence 987 689887543
No 26
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=99.86 E-value=7.5e-20 Score=186.81 Aligned_cols=203 Identities=20% Similarity=0.269 Sum_probs=140.1
Q ss_pred eccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC-----CCCcceEEEEE
Q 012300 186 VDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC-----NYTKAAVGVAI 260 (466)
Q Consensus 186 ~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~-----~~~~~~IGVA~ 260 (466)
.....|.++.|+||++|++.+.+++.. ..+...+|+++++. ..+|+++|||++... ....++|++|+
T Consensus 38 h~~~~wgh~~S~dlv~W~~~~~l~p~~-------~~d~~g~wSGsa~~-~~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~ 109 (349)
T cd08997 38 HGDARIGYFYSRAGGNWIDGGKVFPDG-------LSPGSREWSGSATL-DDDGTVQLFYTAVGRKGEPQPTFTQRLALAR 109 (349)
T ss_pred cCceEEEEEEeCCCCcccCCCccCCCC-------cccCCCeEcceEEE-eCCCeEEEEEeccccCCCCCCCceEEEEEEE
Confidence 345679999999999999988777632 22467899999998 346999999998632 12457788888
Q ss_pred eCCC----CCC------ceeccc------------cCCCCCCccCceEEEcC-CCcEEEEEEecCC--------------
Q 012300 261 SDYP----TGP------FDYLYS------------KRPHGFDSRDMTIFKDD-DGVAYLVYSSEDN-------------- 303 (466)
Q Consensus 261 SdsP----~GP------f~~~~~------------~~p~g~~~iDp~vF~Dd-DG~~YL~~g~~~n-------------- 303 (466)
++.. .+. |+..+. ........+||.||+|+ +|+.||++.+...
T Consensus 110 ~~~~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~~G~~ymvfeant~~~~g~~~~~~~~~~ 189 (349)
T cd08997 110 GTLSVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPETGKTYLLFEGNTAGERGSQECTEAELG 189 (349)
T ss_pred CCCcceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEecCCCCcEEEEEEeccCCCCCcccccccccc
Confidence 7752 111 111110 00112468999999996 8999999998521
Q ss_pred ----------------CcEEEEEcCC-CCCCcc--ccEEE-eecCceeeeeEEEEECCEEEEEEe-CCCCCCCC-----c
Q 012300 304 ----------------SELHIGPLTS-DYLDVS--NVVRR-ILVGQHREAPALFKHLGTYYMVTS-GCTGWAPN-----E 357 (466)
Q Consensus 304 ----------------~~i~i~~Ls~-D~~~~~--g~~~~-i~~g~~~EgP~ifK~~G~YYL~yS-~~tg~~~n-----~ 357 (466)
+.|.++++++ |+..++ ++... .....+.|+|.|||++|+||||+| .++++.++ +
T Consensus 190 ~~~~~~~~~~~a~~~~G~IGia~~~s~dl~~W~~~~PL~~a~~v~d~~E~P~v~~~~gk~yL~~s~~~~~~~~~~~~~~~ 269 (349)
T cd08997 190 RVLPDTVKPDGASYQNGNVGIAVAKNDDLTEWKLLPPLLEANGVNDELERPHVVFHNGKYYLFTISHRSTFAPGLSGPDG 269 (349)
T ss_pred ccccccccccccccccceEEEEEecCCCCCCcEEcCccccCCCcCCceEcceEEEECCEEEEEEeCCcCccccccCCCCc
Confidence 2355666643 444322 11100 011347999999999999999999 45556653 5
Q ss_pred EEEEEeCCCCCCceeC-CCccccCCccceeeccCCCceEEEc
Q 012300 358 ALVHAAESIMGPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIP 398 (466)
Q Consensus 358 ~v~~~Sds~~GPw~~~-gnPi~~~~~~~~~~t~~sq~~~v~~ 398 (466)
..+++|++++|||+.. +.+++.+++. ..++.+|+++|++
T Consensus 270 ~~g~vsdsl~GP~~~~n~sglvl~~p~--~~~~~~ys~~~~p 309 (349)
T cd08997 270 LYGFVSDSLRGPYKPLNGSGLVLGNPT--DAPFQTYSWYVMP 309 (349)
T ss_pred EEEEEeCCCCCCCccCCCCcceeCCCC--CCccccceEEEEC
Confidence 6677999999999997 5666555553 4689999999998
No 27
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=99.83 E-value=1.2e-18 Score=173.99 Aligned_cols=213 Identities=15% Similarity=0.191 Sum_probs=141.3
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCC-CCEEeceeccCCCcccccccCCCCeeee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMW-TWKNEGIVLAAEETNETHDLYKLNVLER 228 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv-~W~~~g~vL~~~~~~~~~~~~~~~~iWA 228 (466)
..++.|++++ +|+||||.|......-..+| .....|.+..|+|+. +|+..+.||...... .++...+|+
T Consensus 13 ~w~~~vi~~~-~g~y~lfy~~~~~~~~~~~~-----~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~----~wd~~~~~~ 82 (291)
T cd08994 13 VWGGSIIKGP-DGKYHLFASRWPEGLGFHGW-----LPYSEIVHAVSDTPEGPYTFQEVVLPGRGGG----YWDARTTHN 82 (291)
T ss_pred EEecceEECC-CCcEEEEEEEccCCCCCCcc-----cccceEEEEEcCCCCCCcEEeeeEcCCCCCC----cccCCCccC
Confidence 5788999875 58999999863311001111 112358899999975 899999999765422 124567999
Q ss_pred ceEEEEccCCEEEEEEEEeCC------CCCcceEEEEEeCCCCCCceec-ccc-CC--C---CCCccCceEEEcCCCcEE
Q 012300 229 PKVIYNDRTGKYVMWMHIDDC------NYTKAAVGVAISDYPTGPFDYL-YSK-RP--H---GFDSRDMTIFKDDDGVAY 295 (466)
Q Consensus 229 P~viyn~~~GkYyly~s~~~~------~~~~~~IGVA~SdsP~GPf~~~-~~~-~p--~---g~~~iDp~vF~DdDG~~Y 295 (466)
|+|++ .+|+|||||++... ....++||+|+|++|.|||+.. ... .+ . ....+||+|++++||++|
T Consensus 83 P~vi~--~~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~~ 160 (291)
T cd08994 83 PTIKR--FDGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSYL 160 (291)
T ss_pred CeEEE--ECCEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCEE
Confidence 99997 67999999997542 2246789999999999999984 221 11 1 134689999998789999
Q ss_pred EEEEecCC------CcEEEEEcCCCC-CCccccEEEe----ecCceeeeeEEEEECCEEEEEEeCCCCCC--CCcEEE-E
Q 012300 296 LVYSSEDN------SELHIGPLTSDY-LDVSNVVRRI----LVGQHREAPALFKHLGTYYMVTSGCTGWA--PNEALV-H 361 (466)
Q Consensus 296 L~~g~~~n------~~i~i~~Ls~D~-~~~~g~~~~i----~~g~~~EgP~ifK~~G~YYL~yS~~tg~~--~n~~v~-~ 361 (466)
|+|.+... ..+.++. ++|. ..++-....+ ......|.|.|+|++|+|||+|+...++. ..+.+. +
T Consensus 161 m~y~g~~~~~~~~~~~~gla~-s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V~~~~g~yym~~~~~~~~~~~~~~~i~~a 239 (291)
T cd08994 161 LVYKGGTYNPTKGNRKYGVAI-ADSPTGPYTKVSGPPFIEPGDNGNTEDPFVWYDKGQFHMIVKDMLGYVTGEKGGGAYF 239 (291)
T ss_pred EEEeccccCCCCCcEEEEEEE-eCCCCCCCEECCCCccccCCCCCceeCceEEEeCCEEEEEEeecccCcCCCCceEEEE
Confidence 99987521 1233443 3443 2232110011 12357999999999999999998765441 223443 4
Q ss_pred EeCCCCCCceeCCCc
Q 012300 362 AAESIMGPWEDMGNP 376 (466)
Q Consensus 362 ~Sds~~GPw~~~gnP 376 (466)
+|++.. .|+..+.+
T Consensus 240 ~S~Dg~-~W~~~~~~ 253 (291)
T cd08994 240 RSKDGI-HWKLAPGL 253 (291)
T ss_pred ECCCCC-CceecCcc
Confidence 566544 79988644
No 28
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=99.82 E-value=3.5e-18 Score=160.01 Aligned_cols=271 Identities=16% Similarity=0.219 Sum_probs=179.8
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEe--ceeccCCCcccccccCCCCeee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNE--GIVLAAEETNETHDLYKLNVLE 227 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~--g~vL~~~~~~~~~~~~~~~~iW 227 (466)
.-||-|.+. .+|.||..++-. .| ..|.+-..+-|..-... -+|....+... -++.+|
T Consensus 13 radp~iykh-~dg~yyftasvp---ey------------drie~rraktleglr~aepvvvwrk~esgp-----ms~liw 71 (324)
T COG3940 13 RADPMIYKH-NDGYYYFTASVP---EY------------DRIEVRRAKTLEGLRNAEPVVVWRKHESGP-----MSNLIW 71 (324)
T ss_pred ccCceEEEc-cCccEEEEeccC---cc------------ceeeeeeccchhhhhccCceeEEeccCCCc-----hhhccc
Confidence 357777765 467777776532 11 23445454444333221 12222222211 256799
Q ss_pred eceEEEEccCCEEEEEEEEeCC-----CCCcceEEEEEeCC--C-CCCceecccc-CCCCCCccCceEEEcCCCcEEEEE
Q 012300 228 RPKVIYNDRTGKYVMWMHIDDC-----NYTKAAVGVAISDY--P-TGPFDYLYSK-RPHGFDSRDMTIFKDDDGVAYLVY 298 (466)
Q Consensus 228 AP~viyn~~~GkYyly~s~~~~-----~~~~~~IGVA~Sds--P-~GPf~~~~~~-~p~g~~~iDp~vF~DdDG~~YL~~ 298 (466)
||++++ .+|+||+||++... +....++.|....+ | +|.|...+.. .+....++|.+.|. ..|+.|++|
T Consensus 72 apeih~--ingkwyiyfaaa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqikt~wesfsldattfe-h~gk~yyvw 148 (324)
T COG3940 72 APEIHF--INGKWYIYFAAAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQIKTAWESFSLDATTFE-HNGKLYYVW 148 (324)
T ss_pred ccceeE--EcceEEEEEeecCcccccccccceeEEEEecCCCCCCcccceecceeccchhcceeeeeeee-eCCEEEEEE
Confidence 999998 99999999987642 12357788877554 3 5888876643 34456789999996 689999999
Q ss_pred Eec-----CCCcEEEEEcCCCCCCccccEEEeecC---------ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE---
Q 012300 299 SSE-----DNSELHIGPLTSDYLDVSNVVRRILVG---------QHREAPALFKHLGTYYMVTSGCTGWAPNEALVH--- 361 (466)
Q Consensus 299 g~~-----~n~~i~i~~Ls~D~~~~~g~~~~i~~g---------~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~--- 361 (466)
... +|.+|+|++|...++ ++|++..+..+ -..|||+|+|++|+-++.||.... ..||+++.
T Consensus 149 aqkdp~i~gnsniyiaemenpwt-ikgepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~ysasat-d~nycmgllwa 226 (324)
T COG3940 149 AQKDPNIKGNSNIYIAEMENPWT-IKGEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFITYSASAT-DVNYCMGLLWA 226 (324)
T ss_pred eccCCCccCCcceEEEeccCCce-ecCceEEecCCCcccEEEEEEecCCceEEEECCEEEEEEecccc-ccceeeeeeee
Confidence 863 367899999977764 67877665432 258999999999999999997543 45787764
Q ss_pred -EeCCCCCC--ceeCCCccccCCccceeeccCCCc-eEEEcccCCcccEEEEEeEe-CC--CC--CCCCee-EEEEEEEc
Q 012300 362 -AAESIMGP--WEDMGNPCIGGNKVFRLTTFFAQS-TYVIPLAGLPGLYIFMADRW-NP--AD--LRESRY-IWLPLIVR 431 (466)
Q Consensus 362 -~Sds~~GP--w~~~gnPi~~~~~~~~~~t~~sq~-~~v~~~~G~~~~yi~~~d~w-~~--~~--~~~~R~-v~lPl~~~ 431 (466)
..++++-| |++...|+....-+ +.-||.+| +|.++.+|+.+ .|+||.|- .. ++ -...|. ...-+.|+
T Consensus 227 nen~dlldpaswtksptpvf~ts~e--n~qygpghnsftvtedgkhd-vlvyharnyteiegdplydpnrhtrlk~~~wd 303 (324)
T COG3940 227 NENSDLLDPASWTKSPTPVFKTSME--NHQYGPGHNSFTVTEDGKHD-VLVYHARNYTEIEGDPLYDPNRHTRLKIINWD 303 (324)
T ss_pred cccCCcCCchhcccCCCcceeeehh--ccccCCCCCceEecCCCccc-EEEEeccccccccCCcCcCCCccceeEEEeec
Confidence 24567766 99998898876433 44555554 57778788544 56666543 22 11 245565 45567898
Q ss_pred CCCCCCCccccCCCccceeeEE
Q 012300 432 GPADRPLEYNFGFPLWSRVSIY 453 (466)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~ 453 (466)
+ |+ +++||.|+=..+.|.
T Consensus 304 e--dg--~pdfgvp~~dt~~~e 321 (324)
T COG3940 304 E--DG--TPDFGVPEVDTLEIE 321 (324)
T ss_pred c--CC--CCCCCCCCCceeeeE
Confidence 8 77 999999986666654
No 29
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=99.73 E-value=4e-16 Score=153.25 Aligned_cols=192 Identities=17% Similarity=0.207 Sum_probs=130.2
Q ss_pred CEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceecc-CCCcccccccCCCCeeeeceEEEEccC-CE
Q 012300 162 RTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLA-AEETNETHDLYKLNVLERPKVIYNDRT-GK 239 (466)
Q Consensus 162 g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~-~~~~~~~~~~~~~~~iWAP~viyn~~~-Gk 239 (466)
|+|+||.+...... .+ .....+++++|+||++|+..+.++. ..... .+...+|+|+|++ .+ |+
T Consensus 14 g~yhlfy~~~~~~~---~~-----~~~~~~~~a~S~D~~~w~~~~~~l~~~~~~~-----~~~~~~~~p~v~~--~~dg~ 78 (276)
T cd08979 14 GKYHLFYLAAPRGG---GD-----GNTSRIGAASSDDGTWWTRPPAPLPPGPPGS-----FDDGGVWTPSVVR--DPDGT 78 (276)
T ss_pred eeEEEEEEccCcCc---CC-----CCcceeEEEEcCCCCccEECCcCccCCCCCc-----hhcCCeEcceEEE--cCCCe
Confidence 78999988643211 00 1134578999999999999998872 22221 2457799999998 45 99
Q ss_pred EEEEEEEeCC-CCCcceEEEEEeCCCCCCceeccccC------------CCCCCccCceEEEcCC-CcEEEEEEecC---
Q 012300 240 YVMWMHIDDC-NYTKAAVGVAISDYPTGPFDYLYSKR------------PHGFDSRDMTIFKDDD-GVAYLVYSSED--- 302 (466)
Q Consensus 240 Yyly~s~~~~-~~~~~~IGVA~SdsP~GPf~~~~~~~------------p~g~~~iDp~vF~DdD-G~~YL~~g~~~--- 302 (466)
|+|||++... ....++|++|+|++... |+...... ......+||.||.+++ |++||+|++..
T Consensus 79 ~~~~Yt~~~~~~~~~~~i~~A~S~D~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~~ 157 (276)
T cd08979 79 YRMFYTGYDRPKGAVQRIGLATSKDLIH-WTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDADE 157 (276)
T ss_pred EEEEEecccCCCCCcceEEEEECCCCCc-eEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEccCC
Confidence 9999997642 22457899999999764 66543211 1224679999999876 89999999753
Q ss_pred CCcEEEEEcCCCCCCccccEEE--ee---cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCcee
Q 012300 303 NSELHIGPLTSDYLDVSNVVRR--IL---VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWED 372 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g~~~~--i~---~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~ 372 (466)
.+.|.+++ ++|+.+++..... +. .....|+|.+++.+|+|||+|+... ......+..+..+.++++.
T Consensus 158 ~~~i~~a~-S~D~~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~g~~~l~~~~~~--~~~~~~y~vg~~~~~~~~~ 229 (276)
T cd08979 158 RGAIGLAT-SPDLIHWTPVPPPPGPRTGYDDGQLEVPQVVKIDGRWYLLYSGRN--EDAKTGYRVGTALFGPGRP 229 (276)
T ss_pred CcEEEEEE-CCCCCcceECCCCCCCCCcccCCcCccceEEEECCEEEEEEEecC--ccCCccEEEEecccCCccc
Confidence 25566665 7888776532111 11 2357899999999999999999643 1122334456666677654
No 30
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=99.71 E-value=1.5e-15 Score=152.15 Aligned_cols=179 Identities=19% Similarity=0.212 Sum_probs=128.1
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
+.++++. +|+||||.+...... .| ....+.+++|+||+||+.++.+|.+.. ..+...+|++++
T Consensus 6 Png~~~~--~G~yhlfyq~~p~~~---~~------~~~~wgha~S~Dlv~W~~~~~al~p~~------~~d~~g~~sGsa 68 (298)
T cd08996 6 PNGLVYF--NGKYHLFYQYNPFGP---VW------GNMHWGHATSKDLVHWEHLPVALAPDD------PYDSGGCFSGSA 68 (298)
T ss_pred CCeeeEE--CCEEEEEEcCCCCCC---CC------CCcEEEEEEecCccceeECCcccCCCC------cccCCeEEeCeE
Confidence 3457775 489999988653211 11 235688999999999999999987522 124567999999
Q ss_pred EEEccC-CEEEEEEEEeCCC--CCcceEEEEEeCCCCCCceeccccC----C--CCCCccCceEEEcCCCcEEEEEEecC
Q 012300 232 IYNDRT-GKYVMWMHIDDCN--YTKAAVGVAISDYPTGPFDYLYSKR----P--HGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 232 iyn~~~-GkYyly~s~~~~~--~~~~~IGVA~SdsP~GPf~~~~~~~----p--~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
+. .+ |+|+|||++.... ...+.+++|+|++....|+...... + .....+||.||.++ |++||++++..
T Consensus 69 v~--~~~g~~~~~YTg~~~~~~~~~~~~~lA~S~ddg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~-g~~~m~~g~~~ 145 (298)
T cd08996 69 VV--DDNGKLVLFYTGNVKLDGGRRQTQCLAYSTDDGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHD-GKWYMVLGAGT 145 (298)
T ss_pred EE--cCCCcEEEEEeceeCCCCCceEEEEEEEEcCCCCEEEECCCCceEcCCCCCCCcccCCeEEeEC-CEEEEEEEEEe
Confidence 97 44 8999999976431 2467899999997677898754221 1 12467999999975 89999999853
Q ss_pred ---CCcEEEEEcCCCCCCccccEEE----eecCceeeeeEEEEEC--CEEEEEEeCCC
Q 012300 303 ---NSELHIGPLTSDYLDVSNVVRR----ILVGQHREAPALFKHL--GTYYMVTSGCT 351 (466)
Q Consensus 303 ---n~~i~i~~Ls~D~~~~~g~~~~----i~~g~~~EgP~ifK~~--G~YYL~yS~~t 351 (466)
.+.+.+.+ ++|+.+++-.... ...+...|+|.+|+.+ |+|||++|...
T Consensus 146 ~~~~~~i~ly~-S~Dl~~W~~~~~~~~~~~~~~~~~EcP~l~~l~~~~k~vL~~s~~~ 202 (298)
T cd08996 146 EDGTGRILLYR-SDDLKNWEYLGELLTSLGDFGYMWECPDLFPLDVEGKWVLIFSPQG 202 (298)
T ss_pred cCCCcEEEEEE-CCCCCCCEEcceecccCCCccceEeCCcEEEECCCCeEEEEECCCC
Confidence 24565655 7888877532111 1124578999999999 99999999643
No 31
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=99.63 E-value=1.3e-14 Score=144.08 Aligned_cols=206 Identities=19% Similarity=0.144 Sum_probs=134.5
Q ss_pred EecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCC-CccCCCceeee
Q 012300 57 ISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPM-KDNGNDSFYYY 135 (466)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~-~~~~~~~~~i~ 135 (466)
..+...|+||++||.++.+|+.. ..|.|. .+..|||.|... +..+.+.|+ +.+.. .....-+..-.
T Consensus 32 ~~~v~~S~Dl~~W~~~g~~l~~~---~~~~~~--~~~~wAP~i~~~---~g~yy~yy~-----~~~~~~~~~igva~s~~ 98 (274)
T cd08990 32 DYHVFSSPDLVNWTDHGVILSVT---DFPAWA--KGQAWAPDVVEK---NGKYYLYFP-----ARDKDGGFAIGVAVSDS 98 (274)
T ss_pred eEEEEECCCCCCcEECcccccCC---CCCccc--cCCcCcCeEEEE---CCEEEEEEE-----eecCCCceEEEEEEeCC
Confidence 35677899999999999999864 224455 347899998887 556755444 22110 00011112223
Q ss_pred cCceeeCCCCCeE--------EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEece
Q 012300 136 PGRIWLDTEGAPI--------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI 207 (466)
Q Consensus 136 pg~~w~dt~GnpI--------~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~ 207 (466)
|..+|.+....++ .+.|+++++++ +|++||+-... ...+.+-.|+|+.+|+.+..
T Consensus 99 p~Gpw~~~~~~~~~~~~~~~~~~iDp~vf~d~-dG~~yl~~~~~----------------~~~~~~~l~~d~~~~~~~~~ 161 (274)
T cd08990 99 PAGPFKDAGGPILITTPSGGWYSIDPAVFIDD-DGQAYLYWGGG----------------LGLRVAKLKPDMLSLKGEPV 161 (274)
T ss_pred CCCCCCCCCCccccccCCCCCCccCCcEEECC-CCCEEEEECCc----------------CCEEEEEeCccccccCCCcE
Confidence 5566776544442 35688988864 58888884321 01233446789999998776
Q ss_pred eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCC--CCCCccCce
Q 012300 208 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRP--HGFDSRDMT 285 (466)
Q Consensus 208 vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p--~g~~~iDp~ 285 (466)
++...+. +. ......+|||.|++ ++|+|||+|+... ...+++|+|++|.|||+..+.... ......+++
T Consensus 162 ~i~~~~~-~~--~~~~~~~EgP~i~k--~~G~YYl~yS~~~----~~~~~~a~s~~p~GP~~~~g~~~~~~~~~g~gh~~ 232 (274)
T cd08990 162 EIVITDG-AG--DELRRFFEAPWVHK--RNGTYYLSYSTGD----PEEIAYATSDSPLGPFTYRGVILDPPVNGGTNHGS 232 (274)
T ss_pred EEEeccc-cC--CCCCCcccceeEEE--ECCEEEEEEECCC----CcEEEEEEcCCCCCCcccCcEEecCCCCCCCCCCe
Confidence 6543221 11 11245689999996 8999999999753 367999999999999997653221 123567888
Q ss_pred EEEcCCCcEEEEEEecC
Q 012300 286 IFKDDDGVAYLVYSSED 302 (466)
Q Consensus 286 vF~DdDG~~YL~~g~~~ 302 (466)
+|.+ +|+.||+|....
T Consensus 233 ~~~~-~g~~y~~yh~~~ 248 (274)
T cd08990 233 IVEF-KGQWYLFYHRAT 248 (274)
T ss_pred EEEE-CCeEEEEEECCc
Confidence 8864 599999998753
No 32
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.61 E-value=4.2e-14 Score=140.61 Aligned_cols=215 Identities=19% Similarity=0.147 Sum_probs=132.3
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
+.+..|+||++|+.++.+||+. +.|.. .+..|||.|..+ +-.+.+.|+..... ......+-+..-.|.
T Consensus 32 i~~~~S~Dl~~W~~~g~~l~~~-----~~~~~-~~~~waP~v~~~---~g~y~~~y~~~~~~---~~~~~i~~a~s~~p~ 99 (287)
T cd08999 32 VPIATSTDLVNWTYLGDAFPKL-----PRWWT-GGDFWAPDVSYV---NGKYVLYYSARDKG---SGGQCIGVATADSPL 99 (287)
T ss_pred EEEEECCCCCCcEECCcccCCC-----CCccc-CCCccCceEEEE---CCEEEEEEEeecCC---CCCEEEEEEECCCCC
Confidence 5678899999999999888765 44433 568999988877 56665555522110 000001111111234
Q ss_pred ceeeCCCCCeE-------EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEE-EeCCCCCCEEeceec
Q 012300 138 RIWLDTEGAPI-------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCY-SSKDMWTWKNEGIVL 209 (466)
Q Consensus 138 ~~w~dt~GnpI-------~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~-sS~DLv~W~~~g~vL 209 (466)
..|......++ .+.|+.|+.++ +|++||+-...... .+. ...+.+. .|+|+..|+.+...+
T Consensus 100 g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~-dG~~Yl~~~~~~~~------~~~----~~~i~~~~ls~d~~~~~~~~~~i 168 (287)
T cd08999 100 GPFTDHGKPPLCCPEGEGGAIDPSFFTDT-DGKRYLVWKSDGNS------IGK----PTPIYLQELSADGLTLTGEPVRL 168 (287)
T ss_pred CCCccCCcceEecCCCCCCccCCCeEECC-CCCEEEEEeccCCC------CCC----CceEEEEEeCCCCccccCCcEee
Confidence 45654221122 24688888864 67888764322110 000 0113332 478999998765443
Q ss_pred cCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCC--cceEEEEEeCCCCCCceecccc--C---CCC--CC
Q 012300 210 AAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYT--KAAVGVAISDYPTGPFDYLYSK--R---PHG--FD 280 (466)
Q Consensus 210 ~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~--~~~IGVA~SdsP~GPf~~~~~~--~---p~g--~~ 280 (466)
......| ....+++|.+++ .+|+|||+|+....... ..+|++|+|++|.|||++.... . +.+ ..
T Consensus 169 ~~~~~~~-----~~~~~EgP~i~k--~~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~Gpw~~~~~~~~~~~~~~~~~~g 241 (287)
T cd08999 169 LRNDEDW-----EGPLVEAPYLVK--RGGYYYLFYSAGGCCSGASTYAVGVARSKSLLGPYVKAPGPPLLTSSGNGRWVG 241 (287)
T ss_pred ecccccc-----cCCceEeeEEEE--ECCEEEEEEEcCCccCCCCCEEEEEEEeCCCcCCcCCCCCCcceeccCCCeEEc
Confidence 2222222 245799999996 89999999997643222 5789999999999999975321 1 111 23
Q ss_pred ccCceEEEcCCCcEEEEEEecC
Q 012300 281 SRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 281 ~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
.-++++|+++||+.|++|.+..
T Consensus 242 ~gh~~~~~~~~g~~~~~yh~~~ 263 (287)
T cd08999 242 PGHNTVVTDDDGRDWLLYHAWD 263 (287)
T ss_pred CCCCeEEECCCCCEEEEEEEEc
Confidence 4688999998999999998753
No 33
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=99.59 E-value=7.2e-14 Score=139.65 Aligned_cols=184 Identities=17% Similarity=0.158 Sum_probs=125.4
Q ss_pred eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCC-CCCCEE-eceeccCCCcccccccCCCCeee
Q 012300 150 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKD-MWTWKN-EGIVLAAEETNETHDLYKLNVLE 227 (466)
Q Consensus 150 ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~D-Lv~W~~-~g~vL~~~~~~~~~~~~~~~~iW 227 (466)
+++|++++. +|+||||.+....... .+.. .....+.+..|++ +.+|+. .+.+|...+..| +...++
T Consensus 80 ~~~P~vi~~--~g~yyl~Y~~~~~~~~--~~~~---~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~-----~~~~~~ 147 (291)
T cd08994 80 THNPTIKRF--DGKYYLYYIGNTDPGP--RPGH---RNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGW-----DNLITS 147 (291)
T ss_pred ccCCeEEEE--CCEEEEEEEcccCCcc--cccC---CCCceEEEEEeCCCCCCcEECCCceecCCCCcc-----cccccc
Confidence 478888876 4899999886431100 0000 1124588889988 579998 556665443322 345689
Q ss_pred eceEEEEccCCEEEEEEEEeCCCC--CcceEEEEEeCCCCCCceeccccC----CCCCCccCceEEEcCCCcEEEEEEec
Q 012300 228 RPKVIYNDRTGKYVMWMHIDDCNY--TKAAVGVAISDYPTGPFDYLYSKR----PHGFDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 228 AP~viyn~~~GkYyly~s~~~~~~--~~~~IGVA~SdsP~GPf~~~~~~~----p~g~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
+|.|+++ .+|+|||||++...+. ...++|+|+|+++.|||+...... ......+||.||+++ |++||+|+..
T Consensus 148 ~p~v~~~-~~g~~~m~y~g~~~~~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V~~~~-g~yym~~~~~ 225 (291)
T cd08994 148 NPAVTRR-PDGSYLLVYKGGTYNPTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTEDPFVWYDK-GQFHMIVKDM 225 (291)
T ss_pred CCCeEEe-CCCCEEEEEeccccCCCCCcEEEEEEEeCCCCCCCEECCCCccccCCCCCceeCceEEEeC-CEEEEEEeec
Confidence 9999983 3899999998764321 357899999999999999864221 123567999999975 8999999975
Q ss_pred CC------CcEEEEEcCCCCCCcccc--EE---Eee-------cCceeeeeEEE-EECCEEEEEEe
Q 012300 302 DN------SELHIGPLTSDYLDVSNV--VR---RIL-------VGQHREAPALF-KHLGTYYMVTS 348 (466)
Q Consensus 302 ~n------~~i~i~~Ls~D~~~~~g~--~~---~i~-------~g~~~EgP~if-K~~G~YYL~yS 348 (466)
.+ ..+.+++ ++|+..++-. .. .+. .....|.|.|+ +.+|+.+|+|+
T Consensus 226 ~~~~~~~~~~i~~a~-S~Dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~erP~v~~~~~g~~~~l~~ 290 (291)
T cd08994 226 LGYVTGEKGGGAYFR-SKDGIHWKLAPGLAYSTTVEWTDGTTEDWGRLERPQVLLDEDGKPTYLFF 290 (291)
T ss_pred ccCcCCCCceEEEEE-CCCCCCceecCcceeeeeEEcCCCcccccccccCCEEEEcCCCCEEEEec
Confidence 32 3455555 6788776422 10 111 13468999999 99999999986
No 34
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.59 E-value=1.8e-13 Score=135.48 Aligned_cols=206 Identities=13% Similarity=0.126 Sum_probs=131.4
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEece--eccCCCcccccccCCCCeeeec
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI--VLAAEETNETHDLYKLNVLERP 229 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~--vL~~~~~~~~~~~~~~~~iWAP 229 (466)
+|++++. +|+|||+.+....+ ....+.+..|+|++||+..+. +++..+..+ ....+|+|
T Consensus 2 nP~v~~~--~G~y~l~y~~~~~~------------~~~~ig~A~S~Dg~~~~~~~~~~i~p~~~~~~-----~~~gv~dP 62 (268)
T cd08993 2 NPAVVYD--NGEFYLLYRAAGND------------GVIRLGLARSRDGLHFEIDPDPPVWPPPEDGF-----EEGGVEDP 62 (268)
T ss_pred cCeEEEE--CCEEEEEEEEECCC------------CceEEEEEEECCCceEEECCcceEcCCCCCcc-----cccCccCc
Confidence 3567764 58999998753210 123588899999999998653 334222221 34678999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEc-CCCcEEEEEEec-----CC
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKD-DDGVAYLVYSSE-----DN 303 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~D-dDG~~YL~~g~~-----~n 303 (466)
.|++ .+|+|||+|++........+|++|+|++. ..|+..+.. .....+|+.+|.+ .||++||+|... ..
T Consensus 63 ~v~~--~~g~y~m~Yta~~~~~~~~~i~lA~S~D~-~~W~~~~~~--~~~~~~d~~~~p~~~~g~y~m~~r~~~~~~~~~ 137 (268)
T cd08993 63 RIVK--IDDTYYITYAARPNAPNGTRIGLATTKDF-ITFERLGTS--LVPNNRDGILFPEKINGKYVMLHRPFEYGGTSP 137 (268)
T ss_pred EEEE--ECCEEEEEEEccCCCCCCcEEEEEEeCCc-ceEEEeccc--CCCCCCCEEEeeEEECCEEEEEEccccCCCCCC
Confidence 9997 79999999998653224578999999995 678876432 1234578888864 379999999643 23
Q ss_pred CcEEEEEcCCCCCCccccEEEeec-------CceeeeeEEEEECCEEEEEEeCCC-CCCCCcEEEEE---eCCCCCCcee
Q 012300 304 SELHIGPLTSDYLDVSNVVRRILV-------GQHREAPALFKHLGTYYMVTSGCT-GWAPNEALVHA---AESIMGPWED 372 (466)
Q Consensus 304 ~~i~i~~Ls~D~~~~~g~~~~i~~-------g~~~EgP~ifK~~G~YYL~yS~~t-g~~~n~~v~~~---Sds~~GPw~~ 372 (466)
..|.+++ ++|+..+......+.+ ....+||..++.++.+||+|-+.. .+...|.+++. -++|.-.+.+
T Consensus 138 ~~I~lA~-S~Dl~~W~~~~~~~~~~~~~wd~~~ig~g~~pi~~~~g~l~~yhg~~~~~~~~Y~~g~~lld~~dp~~~~~~ 216 (268)
T cd08993 138 PDMWLSF-SPDLVHWGNHRFVLSPRPNHWEQLKIGAGTPPIKTEEGWLVLYHGVDQSCGSVYRLGAALLDLEDPTKVIAR 216 (268)
T ss_pred CcEEEEE-CCCcCccCCCeEEecCCCCceeeceecCCCCCcCcCCCEEEEEeccCCCCCcEEeeeEEEEcccCchHHhcc
Confidence 5788885 7888888653322221 124566777765434677775432 22234666543 2344333446
Q ss_pred CCCccccCCc
Q 012300 373 MGNPCIGGNK 382 (466)
Q Consensus 373 ~gnPi~~~~~ 382 (466)
..+|++....
T Consensus 217 ~~~p~l~p~~ 226 (268)
T cd08993 217 SRRPLLEPET 226 (268)
T ss_pred cCCceecCCc
Confidence 5678876543
No 35
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.53 E-value=1.9e-13 Score=135.80 Aligned_cols=207 Identities=13% Similarity=-0.011 Sum_probs=128.3
Q ss_pred ecCccccchhhhhhccccCCCCCCC-------CCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGK-------RSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGND 130 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~-------~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~ 130 (466)
+.+..|+||++||.++.+++.+..- ..+.|. .+..|||.|... +..+.+.|+.... ...... ..-
T Consensus 38 i~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~--~~~~WAP~v~~~---~g~yyl~~s~~~~--~~~~~~-i~v 109 (269)
T cd08986 38 IPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWY--KNAVWAPELHYI---KGRWYLVACMNNP--GYGGSS-ILL 109 (269)
T ss_pred eEEEeCccccCccccCcccccCCcccccccccccCCcc--cCCcCCceEEEE---CCEEEEEEEccCC--CCCceE-EEE
Confidence 4467899999999999888755100 011122 457899999887 6777566652210 000111 111
Q ss_pred ceeeecCceeeCCCCC-eE-EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEecee
Q 012300 131 SFYYYPGRIWLDTEGA-PI-QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIV 208 (466)
Q Consensus 131 ~~~i~pg~~w~dt~Gn-pI-~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~v 208 (466)
+..-.|..+|.+..+. ++ .+.|+.|+.++ +|+.||+-... .+ +--+.|+.........
T Consensus 110 a~a~~p~Gp~~~~~~~~~~~~~iD~~~f~D~-DG~~Yl~~~~~------------------~i-~~l~~d~~~~~~~~~~ 169 (269)
T cd08986 110 STSGKIEGPYKHITGNKPLFPGIDPSLFEDD-DGKVYLVWHNT------------------LI-ARLKDDLSGLAGDPVR 169 (269)
T ss_pred EeCCCCCCCcEeccCCCCCCCccCCceEEcC-CCCEEEEeeCC------------------ce-EeccCccccccCCcEE
Confidence 1112366678765443 32 46799998874 68888874311 01 2235666655544433
Q ss_pred ccCCCc-ccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceeccccCCCCCCccCc
Q 012300 209 LAAEET-NETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDM 284 (466)
Q Consensus 209 L~~~~~-~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp 284 (466)
+..... .+ ....+++|.|++ ++|+|||+|++... .....+|+||+|++|.|||++.... ....-+.
T Consensus 170 ~~~~~~~~~-----~~~~~EgP~i~k--~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~GPy~~~~~~---~~g~Gh~ 239 (269)
T cd08986 170 IDPSPTFYK-----DEIGHEGAFVFK--YGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITGPYGARYFA---GRFLGHN 239 (269)
T ss_pred Eeccccccc-----CCccccccEEEE--ECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCCCccccCcc---ccccCCC
Confidence 322111 11 235689999996 89999999987431 1235689999999999999986421 1223466
Q ss_pred eEEEcCCCcEEEEEEecC
Q 012300 285 TIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 285 ~vF~DdDG~~YL~~g~~~ 302 (466)
++|+++||+.|+++.++.
T Consensus 240 ~~v~~~~G~~~~~~h~~~ 257 (269)
T cd08986 240 TPFQDLDGRWWCTAFFNP 257 (269)
T ss_pred ceEECCCCCEEEEEEcCC
Confidence 789999999999998754
No 36
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.53 E-value=4.4e-13 Score=133.01 Aligned_cols=198 Identities=18% Similarity=0.152 Sum_probs=128.9
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
..+..|+||++||+++.+||+.. +.|. ....|||.|-.. +-.+.+.|+.. ....-+..-.|.
T Consensus 36 ~~~~~S~Dl~~W~~~g~~l~~~~----~~~~--~~~~wAP~v~~~---~g~yy~yys~~---------~~i~va~s~~p~ 97 (275)
T cd09004 36 FDVFSSKDLVNWTKEGIILDMAD----VSWA--NRAAWAPSVIER---NGKYYFYFSAN---------GGIGVAVADSPL 97 (275)
T ss_pred EEEEECCCCCCceECcccccccC----Cccc--CCCcCCCeEEEE---CCEEEEEEEcC---------CcEEEEEeCCCC
Confidence 45678999999999999997641 3454 347999998887 66675666621 111111222355
Q ss_pred ceeeCCCCCeEE--------eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceec
Q 012300 138 RIWLDTEGAPIQ--------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVL 209 (466)
Q Consensus 138 ~~w~dt~GnpI~--------ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL 209 (466)
..|.+..++|+. +.|+.|+.++ +|++||+-... + ....+-.|.|+.+|+.....+
T Consensus 98 gp~~~~~~~p~~~~~~~~~~~iDp~vf~d~-dG~~yl~~~~~-~---------------~~~i~~l~~d~~~~~~~~~~~ 160 (275)
T cd09004 98 GPFKDALGKPLIDKFTFGAQPIDPDVFIDD-DGQAYLYWGGW-G---------------HCNVAKLNEDMISFDGERDGS 160 (275)
T ss_pred CCCCCCCCCccccCCcCCCCccCCCeEECC-CCCEEEEEcCc-C---------------CEEEEEECCCcccccCcceee
Confidence 667664566653 3588888864 67888773210 0 011223578898887665443
Q ss_pred cCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC---CCC--CCccCc
Q 012300 210 AAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR---PHG--FDSRDM 284 (466)
Q Consensus 210 ~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~---p~g--~~~iDp 284 (466)
... ....+++|.+++ ++|+|||+|+.........++++|+|++|.|||+...... +.+ ...-..
T Consensus 161 ~~~---------~~~~~EgP~i~k--~~G~yyl~ys~~~~~~~~Y~~~ya~s~~~~GP~~~~~~~~~~~~~~~~~g~gH~ 229 (275)
T cd09004 161 EIT---------PKNYFEGPFMFK--RNGIYYLMWSEGGWTDPDYHVAYAMADSPLGPFERPGNIILQQDPGIATGPGHH 229 (275)
T ss_pred ecc---------CCCceecceEEE--ECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcccCCcEeeeCCCCCcccCCCC
Confidence 111 234689999996 8999999999754322356899999999999999764211 111 234456
Q ss_pred eEEEcC-CCcEEEEEEec
Q 012300 285 TIFKDD-DGVAYLVYSSE 301 (466)
Q Consensus 285 ~vF~Dd-DG~~YL~~g~~ 301 (466)
++|+++ +|+.|++|...
T Consensus 230 ~~~~~~~~~~~~~~yh~~ 247 (275)
T cd09004 230 SVVNVPGTDEWYIVYHRR 247 (275)
T ss_pred EEEEeCCCCeEEEEEeCC
Confidence 788875 58899999864
No 37
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=99.50 E-value=9.4e-13 Score=139.82 Aligned_cols=174 Identities=20% Similarity=0.298 Sum_probs=120.1
Q ss_pred ceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEE
Q 012300 154 GILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIY 233 (466)
Q Consensus 154 ~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viy 233 (466)
++++. +|+|+||.++.... ..| +...+.+++|+||+||+.++.||.+... .+..++|+++++.
T Consensus 31 g~~~~--~G~yHlfyq~~p~~---~~~------g~~~Wgha~S~Dlv~W~~~~~al~P~~~------~d~~G~~sGsav~ 93 (445)
T TIGR01322 31 GLIYF--KGEYHLFYQWFPFG---PVH------GLKSWGHYTSKDLVHWEDEGVALAPDDP------YDSHGCYSGSAVD 93 (445)
T ss_pred cceEE--CCEEEEEEccCCCC---Ccc------CceEEEEEECCCccccEECCccCcCCCc------ccCCceEECeEEe
Confidence 34443 59999998864321 111 2235789999999999999999876532 1346799999996
Q ss_pred EccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceeccc-c--C-CCC--CCccCceEEEcCCCcEEEEEEecC--
Q 012300 234 NDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYS-K--R-PHG--FDSRDMTIFKDDDGVAYLVYSSED-- 302 (466)
Q Consensus 234 n~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~~~-~--~-p~g--~~~iDp~vF~DdDG~~YL~~g~~~-- 302 (466)
.+|+++|||++.... ...+.+++|+|++ .+.|+..+. . . |.+ ...+||.||.+ +|++||++++..
T Consensus 94 --~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~D-g~~~~k~~~pvi~~~~~~~~~~fRDP~V~~~-~g~~~M~~g~~~~~ 169 (445)
T TIGR01322 94 --NNGQLTLMYTGNVRDSDWNRESYQCLATMDD-DGHFEKFGIVVIELPPAGYTAHFRDPKVWKH-NGHWYMVIGAQTET 169 (445)
T ss_pred --eCCEEEEEEeccccCCCCCeeEEEEEEEcCC-CCeEEECCCceEeCCCCCCcCcCCCCcEEeE-CCEEEEEEEEecCC
Confidence 789999999975321 1234567899988 578987542 1 1 222 24689999985 689999998742
Q ss_pred -CCcEEEEEcCCCCCCcc--ccEEEee------cCceeeeeEEEEECCEEEEEEeC
Q 012300 303 -NSELHIGPLTSDYLDVS--NVVRRIL------VGQHREAPALFKHLGTYYMVTSG 349 (466)
Q Consensus 303 -n~~i~i~~Ls~D~~~~~--g~~~~i~------~g~~~EgP~ifK~~G~YYL~yS~ 349 (466)
.+.+.+.+ |+|+.+++ +....-. .+...|+|.+|+.+|+++|++|.
T Consensus 170 ~~g~i~ly~-S~Dl~~W~~~g~~~~~~~~~~~~~g~~~ECPdlf~l~~k~vL~~s~ 224 (445)
T TIGR01322 170 EKGSILLYR-SKDLKNWTFVGEILGDGQNGLDDRGYMWECPDLFSLDGQDVLLFSP 224 (445)
T ss_pred CceEEEEEE-CCCcccCeEecccccccccccCCccceEECCeEEEECCcEEEEEec
Confidence 23454544 88888774 3221110 13468999999999999999984
No 38
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=99.50 E-value=1e-12 Score=139.17 Aligned_cols=179 Identities=21% Similarity=0.212 Sum_probs=121.3
Q ss_pred CceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEE
Q 012300 153 GGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVI 232 (466)
Q Consensus 153 ~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~vi 232 (466)
.++++. +|+|+||.++..... .| +...+.+++|+||+||+..+.||.+... .+..++|+++++
T Consensus 13 nGl~~~--~G~yHlFyq~~p~~~---~~------g~~~Wgha~S~Dlv~W~~~~~aL~P~~~------~d~~g~~sGsav 75 (437)
T smart00640 13 NGLIYY--KGKYHLFYQYNPFGP---VW------GNIHWGHAVSKDLVHWTHLPVALAPDEW------YDSNGVFSGSAV 75 (437)
T ss_pred CeeeEE--CCEEEEEEecCCCCC---CC------CCeEEEEEEcCCcceeeecCcccCCCCc------CCCCcEEEEEEE
Confidence 346665 599999998753211 11 2345889999999999999999876531 134569999999
Q ss_pred EEccCCEEEEEEEEeCCC-----CCcceEEEEEeCCCCCCceecc--cc---CCC--CCCccCceEEEcCCCcEEEEEEe
Q 012300 233 YNDRTGKYVMWMHIDDCN-----YTKAAVGVAISDYPTGPFDYLY--SK---RPH--GFDSRDMTIFKDDDGVAYLVYSS 300 (466)
Q Consensus 233 yn~~~GkYyly~s~~~~~-----~~~~~IGVA~SdsP~GPf~~~~--~~---~p~--g~~~iDp~vF~DdDG~~YL~~g~ 300 (466)
. .+|+|+|||++.... .....+.++.+++....|+... .. .|. ....+||.||.+++|++||+++.
T Consensus 76 ~--~~~~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~~~~~m~~g~ 153 (437)
T smart00640 76 I--DPGNLSLLYTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDGDKWYMVIGA 153 (437)
T ss_pred E--CCCceEEEEcCCcccccccCcccEEEEEEEECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECCCEEEEEEEE
Confidence 7 677899999875311 1223444555555567898752 21 121 24679999999876799999996
Q ss_pred cC---CCcEEEEEcCCCCCCcc--ccEEEe---ecCceeeeeEEEEECC-----EEEEEEeCCC
Q 012300 301 ED---NSELHIGPLTSDYLDVS--NVVRRI---LVGQHREAPALFKHLG-----TYYMVTSGCT 351 (466)
Q Consensus 301 ~~---n~~i~i~~Ls~D~~~~~--g~~~~i---~~g~~~EgP~ifK~~G-----~YYL~yS~~t 351 (466)
.. .+.+.+.+ |+|+.+++ +..... ..+...|+|-+|+.++ +++|++|...
T Consensus 154 ~~~~~~G~i~ly~-S~Dl~~W~~~~~~~~~~~~~~g~~wECPdlf~l~~~~~~~~~vLi~s~~g 216 (437)
T smart00640 154 SDEDKTGIALLYR-STDLKNWTLLGELLHSGVGDTGGMWECPDLFPLPGDGDTSKHVLKVSPQG 216 (437)
T ss_pred EecCCCeEEEEEE-CCCcccCeECCcccccCCCCccceEECCcEEEeCCCCCceeEEEEECcCC
Confidence 42 23355554 67887764 332111 1135799999999998 9999999653
No 39
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=99.48 E-value=1.8e-12 Score=127.36 Aligned_cols=215 Identities=18% Similarity=0.172 Sum_probs=133.5
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
..|..|+||++||..+.+++... +. +.+.. .+-.|||.|.... +..+.+.|+-... ...... ..-+..--+.
T Consensus 27 ~~~~~S~Dl~~W~~~~~~~~~~~-~~-~~~~~-~~~~wap~v~~~~--~g~~~l~yt~~~~--~~~~~~-i~~a~s~d~~ 98 (286)
T cd08772 27 IAHATSKDLVNWTDHPVALVWWA-RR-GGPKD-SGGIWAPSIVYIE--NGKFYLYYTDVSF--TKNQQT-IGVATAEDGN 98 (286)
T ss_pred EEEEECCCcCcceECCccchhhc-cc-CCCCC-CCcEecceEEEcC--CCCEEEEEEeecC--CCCcee-EEEEEcCCCC
Confidence 57889999999999999885210 00 12222 4589999887662 2667566662110 001111 0000111122
Q ss_pred ceeeCCCC-----------CeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEec
Q 012300 138 RIWLDTEG-----------APIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEG 206 (466)
Q Consensus 138 ~~w~dt~G-----------npI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g 206 (466)
..|.+... ....+.||.|++++ +|+|||+-..... .....|.+++|+|+.+|+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~-dG~~y~~~~~~~~------------~~~~~i~~~~s~d~~~w~~~~ 165 (286)
T cd08772 99 GPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDD-DGKWYLVFGSGDH------------HNFGGIFLYESDDDTTWKKGS 165 (286)
T ss_pred CCCccccccccccCCCCccccccccCCeEEEcC-CCCEEEEEccccC------------CCCCeEEEEEcCCCCCccccc
Confidence 33432211 12235799999875 4888887543211 012468899999999998877
Q ss_pred eeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC--CCcceEEEEEeCCCCCCceecccc---------C
Q 012300 207 IVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN--YTKAAVGVAISDYPTGPFDYLYSK---------R 275 (466)
Q Consensus 207 ~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~--~~~~~IGVA~SdsP~GPf~~~~~~---------~ 275 (466)
..+.... ......+++|.+++ .+|+|||+|+..... ....++++|+|+++.|||+..... .
T Consensus 166 ~~~~~~~------~~~~~~~E~P~~~~--~~g~~yL~~s~~~~~~~~~~y~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 237 (286)
T cd08772 166 AELLISE------GEGGKQIEGPGLLK--KNGKYYLFYSINGTGRVDSTYSIGYARSESDTGPYVPKSDTSGGLSLTGGN 237 (286)
T ss_pred ceeeEee------ccCCCceeccEEEE--ECCEEEEEEEcCCCcCCCCCcceEEEEccCCCCCcccCCCCCCcccccccc
Confidence 5421111 11346789999996 889999999986532 246789999999999999875321 0
Q ss_pred CCCCCccCceEEEcCCCcEEEEEEec
Q 012300 276 PHGFDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 276 p~g~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
..+.....+++|+|.+|+.||++...
T Consensus 238 ~~~~~~~~~~~~~~~~g~~~~~~~~~ 263 (286)
T cd08772 238 DGGVGPYHAAAFNDAGGRVVLVYHAY 263 (286)
T ss_pred CCCCCCCccEEEECCCCCEEEEEEec
Confidence 11234567788998899999998764
No 40
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=99.46 E-value=5.3e-12 Score=125.50 Aligned_cols=205 Identities=12% Similarity=0.047 Sum_probs=126.1
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
..|..|+||++||+.+.+|+++ +.... ....|+|-+... +-.+.+.||-.... ...... ..-+ .-..+
T Consensus 32 wgha~S~Dlv~W~~~~~al~~~-----~~~~d-~~g~~sgs~~~~---~g~~~l~YTg~~~~-~~~~~~-i~~A-~S~D~ 99 (280)
T cd08995 32 WSLLTTKDLVNYEDHGEAIPRG-----GDEDD-DDAIGTGSVIKG---EGTYHAFYTGHNLD-GKPKQV-VMHA-TSDDL 99 (280)
T ss_pred EEEEEccCcCccEECcceecCC-----CCccc-ccCceEeEEEee---CCEEEEEEEEECCC-CCCcEE-EEEE-ECCCC
Confidence 5789999999999999999775 22222 346888865554 45665666511110 000000 0000 00123
Q ss_pred ceeeCCCCCeEE----------eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEece
Q 012300 138 RIWLDTEGAPIQ----------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI 207 (466)
Q Consensus 138 ~~w~dt~GnpI~----------ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~ 207 (466)
..|....++||. ..||.|++++++|+|||+-....... . . .....|.+++|+||.+|+..+.
T Consensus 100 ~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~-~---~----~~~g~i~~~~S~Dl~~W~~~~~ 171 (280)
T cd08995 100 ITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDG-P---Y----NRRGCIALFTSKDLKNWEYEEP 171 (280)
T ss_pred CccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEeccCCC-C---C----CCCeEEEEEEeCCcCcceecCc
Confidence 445443345543 24899998766799999744321100 0 0 0123478899999999999875
Q ss_pred eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEE
Q 012300 208 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIF 287 (466)
Q Consensus 208 vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF 287 (466)
+.... ....+++|.++. .+|+|||+|+... ....+.+++++++.|||+......-.|....=|..|
T Consensus 172 ~~~~~---------~~~~~E~P~l~~--~~g~~~L~~s~~~---~~~~~~Y~~~~~~~g~~~~~~~~~~dg~dfYA~~~~ 237 (280)
T cd08995 172 FYAPG---------LYFMPECPDLFK--MGDWWYLVYSEFS---ENRKTHYRVSKSPFGPWRAPDDDTFDGRAFYAAKTA 237 (280)
T ss_pred eecCC---------CcceeecceEEE--ECCEEEEEEEecc---CCCcEEEEEeCCCCCCeEcCCcCccCcccccceeEE
Confidence 54321 134689999996 8999999999764 234677888999999997543211125667778888
Q ss_pred EcCCCcEEEE
Q 012300 288 KDDDGVAYLV 297 (466)
Q Consensus 288 ~DdDG~~YL~ 297 (466)
.|+ |+..|+
T Consensus 238 ~~~-~r~i~~ 246 (280)
T cd08995 238 SDG-TRRFLF 246 (280)
T ss_pred EeC-CeEEEE
Confidence 887 765543
No 41
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=99.43 E-value=8.1e-12 Score=124.68 Aligned_cols=206 Identities=17% Similarity=0.154 Sum_probs=118.0
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccc-----cCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCce
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAK-----RRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSF 132 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~-----~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~ 132 (466)
.....|+||++||..+.+|+++ |.|.+ ..+..|||.|... +-.+.+.|+.... ..... ..+-+.
T Consensus 21 ~~v~~S~DL~~W~~~g~~~~~~-----~~~~~~~~~~~~~~~WAP~v~~~---~G~yylyys~~~~--~~~~~-~igva~ 89 (279)
T cd08988 21 ITILSSKDLVNWTYSGSAFATE-----PTWKKRVPPSFDGHLWAPDIYQH---NGKFYLYYSVSAF--GSNTS-AIGLAV 89 (279)
T ss_pred EEEEECCCcCCccccCccccCC-----CccccccCCCCCCCEecceEEEE---CCEEEEEEEeccC--CCCCc-eEEEEE
Confidence 3467889999999999999765 44432 1346899999887 6677555551110 00000 011111
Q ss_pred eeecCceeeCCC---CCeE---------EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCC
Q 012300 133 YYYPGRIWLDTE---GAPI---------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDM 199 (466)
Q Consensus 133 ~i~pg~~w~dt~---GnpI---------~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DL 199 (466)
.-.|..+|.+.. ..+| .+.|++++.|+ +|++||+-.... .++.+.+ +.|+
T Consensus 90 s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~Dd-DG~~Yl~~g~~~----------------~gi~~~eL~~d~ 152 (279)
T cd08988 90 NKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQ-HGQPWLSFGSFW----------------GGIKLFELDKDT 152 (279)
T ss_pred cCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcC-CCCEEEEecccC----------------CCEEEEEECccc
Confidence 112333332211 1222 24688998875 789998732110 1233333 3454
Q ss_pred CCCEEecee--ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceecccc
Q 012300 200 WTWKNEGIV--LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLYSK 274 (466)
Q Consensus 200 v~W~~~g~v--L~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~~~~ 274 (466)
..-...+.. +.... .....+++|.|++ ++|+|||+++.... .....+++||+|++|.|||++....
T Consensus 153 ~~~~~~~~~~~i~~~~-------~~~~~~Egp~i~k--~~g~YYl~~S~g~~~~~~~~~y~v~~arS~~~~GPy~~~~~~ 223 (279)
T cd08988 153 MKPAEPGELHSIAGRE-------RSSAAIEAPFILY--RGDYYYLFVSFGLCCRGGDSTYKIAVGRSKNITGPYLDKTGR 223 (279)
T ss_pred CCccCCCcceEEeccC-------CCCCceEeeEEEE--cCCeEEEEEEcCcccCCCCCCeEEEEEEeCCCCCCCCCCCCC
Confidence 432111111 11110 0135689999996 89999999986432 1234689999999999999874211
Q ss_pred C---CCC----------CCccCceEEEcCCCcEEEEEEec
Q 012300 275 R---PHG----------FDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 275 ~---p~g----------~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
. ..+ ...-..+||+|+ |+.||+|...
T Consensus 224 p~~~~~~~~~~~~~~~~~g~GH~~v~~~~-g~~~~~yH~~ 262 (279)
T cd08988 224 SMLQGGGTILDKGNDRWVGPGHNSAYTDD-GKDYLVLHAY 262 (279)
T ss_pred CcccCCceEEEcCCCcEEcCCCCEEEeCC-CCEEEEEEEe
Confidence 1 000 112467889876 8999999864
No 42
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.43 E-value=5.2e-12 Score=126.30 Aligned_cols=218 Identities=16% Similarity=0.159 Sum_probs=128.9
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
+.+..|+||++|+.++.+++++. +.|. .+..|||.|... +-.+.+.|+-.... .+.. ...-+..-.|-
T Consensus 25 i~~~~S~Dl~~W~~~~~~~~~~~----~~~~--~~~~waP~v~~~---~g~yyl~ys~~~~~--~~~~-~i~~a~s~~p~ 92 (294)
T cd08991 25 FAVYSSPDLVDWKLHGGALLALD----DDWG--RRGFWAPEVYYY---NGKFYMYYSANDRD--EKTE-HIGVAVSDSPL 92 (294)
T ss_pred eEEEECCCCCCceECCccccCCC----CCcc--CCcEEccEEEEE---CCEEEEEEEeccCC--CCcc-eEEEEEeCCCC
Confidence 34567999999999998887652 2365 457999998776 56675555521110 0111 11111112244
Q ss_pred ceeeCCCCCeE----EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcE-EEEEeCCCCCCEEeceecc-C
Q 012300 138 RIWLDTEGAPI----QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGV-GCYSSKDMWTWKNEGIVLA-A 211 (466)
Q Consensus 138 ~~w~dt~GnpI----~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi-~v~sS~DLv~W~~~g~vL~-~ 211 (466)
.+|.+....++ .+.|+.++.++ +|++||+-+....... ..++ .+--|.|+.+|+....... .
T Consensus 93 gp~~~~~~~~~~~~~~~iD~~vf~d~-dG~~yl~~~~~~~~~~-----------~~~i~~~~l~~d~~~~~~~~~~~~~~ 160 (294)
T cd08991 93 GPFRDIKKPPIDFEPKSIDAHPFIDD-DGKPYLYYSRNNYGNR-----------VSDIYGTELVDDKLSIKTELVGPPIP 160 (294)
T ss_pred CCCCcCCCCcccCCCcccCCceEECC-CCCEEEEEEecCCCCc-----------ccceEEEEEccceeeeccceeecccc
Confidence 55654322222 24688888875 5889987653321100 0123 2335778888764332211 1
Q ss_pred CCcc--------cc-cccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc---CCC--
Q 012300 212 EETN--------ET-HDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK---RPH-- 277 (466)
Q Consensus 212 ~~~~--------~~-~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~---~p~-- 277 (466)
...+ |. ........+++|.+++ ++|+|||+|++........++++|+|++|.|||++.... ...
T Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k--~~g~yyl~ys~~~~~~~~y~~~~a~s~~~~gp~~~~~~~pl~~~~~~ 238 (294)
T cd08991 161 VSAPGIDEIFERWRFGEGKDWRTNEGPTVLK--HNGRYYLTYSANHYENEDYGVGYATADSPLGPWTKYSNNPILRRNGD 238 (294)
T ss_pred ccccccccccccccccccccCceeeCcEEEE--ECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcEecCCCceEeeCCC
Confidence 1100 00 0012345799999996 899999999975432234689999999999999975211 001
Q ss_pred --CCCccCceEEEcCC-CcEEEEEEec
Q 012300 278 --GFDSRDMTIFKDDD-GVAYLVYSSE 301 (466)
Q Consensus 278 --g~~~iDp~vF~DdD-G~~YL~~g~~ 301 (466)
-......++|+++| |+.||+|.+.
T Consensus 239 ~~~~g~gh~~~~~~~~g~~~~~~yh~~ 265 (294)
T cd08991 239 KGVEGTGHNSVVKSPDGGELYIVYHAH 265 (294)
T ss_pred CceEeCCCCceEECCCCCEEEEEEeee
Confidence 12346778999888 7899999874
No 43
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=99.42 E-value=1.3e-11 Score=124.97 Aligned_cols=201 Identities=16% Similarity=0.179 Sum_probs=133.6
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
+.++++. +|+|+||-.+..... .| +...+..++|+||++|+..+.||.+.... +..++|..++
T Consensus 12 PnG~~~~--~G~yHlFyQ~~P~~~---~~------g~~~WgHa~S~Dlv~W~~~~~aL~P~~~~------d~~g~~SGs~ 74 (308)
T PF00251_consen 12 PNGLVYY--DGKYHLFYQYNPFGP---EW------GNMHWGHATSKDLVHWEHLPVALPPDEEY------DADGCFSGSA 74 (308)
T ss_dssp EEEEEEE--TTEEEEEEEEETTSS---SS-------SBEEEEEEESSSSSEEEEEEEE-SSSGG------GTTEEEEEEE
T ss_pred CccCeEe--CCEEEEEeccCCCCc---cc------ceeEEEEEECCCCCCceeCCceEcccccC------CcCccCcceE
Confidence 3467774 599999988754211 11 23567899999999999999999876421 3467999999
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecc---cc---CCC--CCCccCceEEEcCCCcEEEEEEecCC
Q 012300 232 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLY---SK---RPH--GFDSRDMTIFKDDDGVAYLVYSSEDN 303 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~---~~---~p~--g~~~iDp~vF~DdDG~~YL~~g~~~n 303 (466)
+. .+++++|||++...+. .+.+.+|+|.+....|+... .. .|. ....+||.||.+++|++||+.++...
T Consensus 75 ~~--~~~~~~~~YTg~~~~~-~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~~~~~~m~~g~~~~ 151 (308)
T PF00251_consen 75 VV--DDDNLVLFYTGNNRDG-KQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWREDGRWYMLLGAGRD 151 (308)
T ss_dssp EE--ETTCEEEEEEEEETTT-EEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEECTTEEEEEEEEEET
T ss_pred EE--ECCEEEEEEeccCCCC-CeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEecCCEEEEEEecccc
Confidence 97 5568999999876532 67899999977677888742 11 122 24689999977778999999987532
Q ss_pred --CcEEEEEcCCCCCCccccEEEee----cCceeeeeEEEEECCE--------EEEEEeCCCCC-CCCcEEEEEeCC--C
Q 012300 304 --SELHIGPLTSDYLDVSNVVRRIL----VGQHREAPALFKHLGT--------YYMVTSGCTGW-APNEALVHAAES--I 366 (466)
Q Consensus 304 --~~i~i~~Ls~D~~~~~g~~~~i~----~g~~~EgP~ifK~~G~--------YYL~yS~~tg~-~~n~~v~~~Sds--~ 366 (466)
+.+.+.+ ++|+.+++-.-.... .+...|+|.+|+.+++ ++|++|..... ......+++++- .
T Consensus 152 ~~g~i~~y~-S~Dl~~W~~~~~l~~~~~~~g~~~ECPdlf~l~~~~~~~~~~~~vl~~s~~g~~~~~~~~~Y~vG~~d~~ 230 (308)
T PF00251_consen 152 GRGCILLYT-SDDLIHWEYLGPLFIPGDNGGGMWECPDLFPLDGKGDGTGKWVWVLIFSPQGIEDNGHGTYYMVGDFDFD 230 (308)
T ss_dssp TEEEEEEEE-ESSSSSEEEEEEESEEETTTSSEEEEEEEEEEEBTTSSSEEEEEEEEEEEESTTTTTTEEEEEEEEEETT
T ss_pred CcceEEEEE-cCCcccCceeCcccccccccccccccceEEEECCcccccceEEEEEEecccccccccccceEEeEEecCC
Confidence 2344444 688887753221111 2568999999998777 68999852111 122333444442 5
Q ss_pred CCCceeC
Q 012300 367 MGPWEDM 373 (466)
Q Consensus 367 ~GPw~~~ 373 (466)
.+.|+..
T Consensus 231 ~~~f~~~ 237 (308)
T PF00251_consen 231 GGTFTPD 237 (308)
T ss_dssp TTEEEES
T ss_pred CCeeeee
Confidence 5677654
No 44
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=99.41 E-value=7.6e-12 Score=126.96 Aligned_cols=208 Identities=15% Similarity=0.097 Sum_probs=125.8
Q ss_pred EecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeecc-CCcceEEeeeCCCCccCCCCCccCCCceeee
Q 012300 57 ISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLD-ENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY 135 (466)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~-~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~ 135 (466)
-.++..|.||++||.++.+++++ .-+.|+. ..|||.|.+.-. .+..+.+.|+ ++-.. ..-+..-.
T Consensus 47 ~i~v~~S~DL~~W~~~g~v~~~~---~~~~w~~---~~WAP~v~~~~~~~~gkyylyy~------~~~~~--igva~Sds 112 (311)
T cd09003 47 DITVISSDDMVNWTDHGEIFVPN---GIAKWAG---NSWAPSIAVKKINGKGKFYLYFA------NGGGG--IGVLTADS 112 (311)
T ss_pred cEEEEECCCCCCcEEcccccCcC---CCCCccc---ccCCCceEEeccCCCCEEEEEEe------cCCCe--EEEEEcCC
Confidence 35677899999999999999743 1257764 679999887610 0156644444 11100 11112233
Q ss_pred cCceeeCCCCCeEE------------eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCC
Q 012300 136 PGRIWLDTEGAPIQ------------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTW 202 (466)
Q Consensus 136 pg~~w~dt~GnpI~------------ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W 202 (466)
|..+|.+..|+|+. +.|+.++.|+ +|+.||+-....... .+ .....+.+.+ ++|+..-
T Consensus 113 P~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~Dd-DG~~Yl~~g~~~~~~---~~-----~~~~~i~i~~l~~D~~~~ 183 (311)
T cd09003 113 PVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDD-DGQGYLYFGGGVPGG---RW-----ANPNTARVIKLGDDMISV 183 (311)
T ss_pred CCCCcccCCCCeeecCCCCCccCCccccCCCeEECC-CCCEEEEECCccCCC---cc-----ccCCCEEEEEeCCCceec
Confidence 67788876566653 3688888875 577777643211000 00 0112345544 4477654
Q ss_pred EEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC-----CCCcceEEEEEeCCCCCCceeccccC--
Q 012300 203 KNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC-----NYTKAAVGVAISDYPTGPFDYLYSKR-- 275 (466)
Q Consensus 203 ~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~-----~~~~~~IGVA~SdsP~GPf~~~~~~~-- 275 (466)
+.+...+. ....++||.+++ ++|+|||+|+.... .....++++|+|++|.|||+..+...
T Consensus 184 ~g~~~~i~-----------~~~~~Egp~~~K--~~G~YYL~ys~~~~~~~~~~~~~y~v~y~~s~~~~GP~~~~g~il~~ 250 (311)
T cd09003 184 DGSAVTID-----------APYFFEASGLHK--INGTYYYSYCTNFGGRDPGKPPPGRIAYMTSKNPMGPFTYKGIILKN 250 (311)
T ss_pred cCCceEcc-----------CCCceEeeeEEE--ECCEEEEEEeCCCCccCCCCCCceeEEEEEcCCCCCCcccCCEeccC
Confidence 43222211 124689999996 89999999986532 12457899999999999999754221
Q ss_pred CC---C-CCccCceEEEcCCCcEEEEEEec
Q 012300 276 PH---G-FDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 276 p~---g-~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
+. + ...-..++|.+ +|+.|++|...
T Consensus 251 ~~~~~~~~g~gH~s~~~~-~g~~y~vyH~~ 279 (311)
T cd09003 251 PGAFFGNGGNNHHSIFEF-KGKWYIAYHAR 279 (311)
T ss_pred CccccCCccCCCccEEEe-CCeEEEEEeCC
Confidence 11 1 13346677764 78999999853
No 45
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.40 E-value=2.8e-11 Score=121.72 Aligned_cols=214 Identities=15% Similarity=0.067 Sum_probs=124.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCc--cCCCceeee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKD--NGNDSFYYY 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~--~~~~~~~i~ 135 (466)
+.+..|+||++||..+.+++++. .-|. ....|||.|.+. +-.+.+.|+ +.+.... ...-+..-.
T Consensus 38 i~v~~S~DLv~W~~~g~~~~~~~----~~~~--~~~~WAP~v~~~---~G~yyly~s-----~~~~~~~~~~~~va~s~~ 103 (291)
T cd08981 38 FDVYKSKDLKDWEGPYPVFRPPD----DFWA--DDNFWAPEVHEY---KGRYYMFAT-----FHNPGGERRGTAILVSDS 103 (291)
T ss_pred EEEEECCChhcccccceeeccCC----CcCc--cccccCCeeeee---CCEEEEEEE-----eccCCCceeeEEEEECCC
Confidence 45678999999999999997651 1254 336899999876 777765554 1211100 011111123
Q ss_pred cCceeeCCCCCeE-----EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEece-e
Q 012300 136 PGRIWLDTEGAPI-----QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGI-V 208 (466)
Q Consensus 136 pg~~w~dt~GnpI-----~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~-v 208 (466)
|-.+|.+..+.++ .+.|++++.|+ +|+.||+-...-... ...++.+.+ +.|+..-..+.. +
T Consensus 104 p~GP~~~~~~~~~~~~~~~~iDp~~f~Dd-DG~~Yl~~~~~~~~~-----------~~~~i~~~eL~~d~~~~~ge~~~i 171 (291)
T cd08981 104 PEGPFVPHSDGPVTPEDWMCLDGTLYVDE-DGKPWMVFCHEWVQV-----------YDGTIEAVRLSPDLSRAIGEPVLL 171 (291)
T ss_pred CCCCCEeCCCCccCCCCCceEcCceEEcC-CCCEEEEEEeccccc-----------CCCCEEEEEeCCCccccCCceEEE
Confidence 6667776543343 34688888774 577776532110000 001233333 455543322222 3
Q ss_pred ccCCCccccccc------CCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCC--CCCCceeccccCCCCCC
Q 012300 209 LAAEETNETHDL------YKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDY--PTGPFDYLYSKRPHGFD 280 (466)
Q Consensus 209 L~~~~~~~~~~~------~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~Sds--P~GPf~~~~~~~p~g~~ 280 (466)
+...+.+|.... .....++||.+++ .++|+|||+|++.. ....++++|.|++ |+|||++..... ....
T Consensus 172 ~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k-~~~G~YYl~yS~~~--~~~Y~~~~~rs~s~~~~GPy~~~~~pi-~~~~ 247 (291)
T cd08981 172 FRASEAPWVREFGLIGRGSGGYVTDGPFLYR-TKSGRLLMLWSSFS--DGGYAQGVARSESGTLLGPWVQEPEPL-ISDD 247 (291)
T ss_pred ecCCcCCcccccccccccCCCeEeeCCEEEE-eCCCcEEEEEEecC--CCCEEEEEEEcCCCCccCCcEECCCcc-cCCC
Confidence 332222332110 1234579999996 35899999998632 2356788888886 999999865211 1122
Q ss_pred ccCceEEEcCCCcEEEEEEec
Q 012300 281 SRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 281 ~iDp~vF~DdDG~~YL~~g~~ 301 (466)
.-..++|++.||+.|++|...
T Consensus 248 ~GH~s~v~~~~G~~~~vyH~~ 268 (291)
T cd08981 248 GGHGMLFRTFDGRLMLSLHTP 268 (291)
T ss_pred CCCCeeEEcCCCCEEEEEECC
Confidence 345678989999999999875
No 46
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=99.40 E-value=1.6e-11 Score=127.30 Aligned_cols=237 Identities=24% Similarity=0.308 Sum_probs=135.1
Q ss_pred ccCcEEEEEeCCCC----CCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcce----
Q 012300 187 DIIGVGCYSSKDMW----TWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAA---- 255 (466)
Q Consensus 187 ~~~gi~v~sS~DLv----~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~---- 255 (466)
+...|.++-|++.. +|+..|.|++...... .+..-|+.+++.+..+|+-.|||++... ....++
T Consensus 94 ~~A~I~~fY~k~G~~~~~~W~~~G~vf~~g~~~~-----~~s~EWSGSA~l~~~dg~I~LfYTav~~~~~~~~~Q~l~t~ 168 (428)
T PF02435_consen 94 DDARIYLFYSKDGDNANDGWKNGGPVFPEGASFV-----PGSREWSGSATLNNDDGSIQLFYTAVGFSDTPTFRQRLATA 168 (428)
T ss_dssp CGEEEEEEEEETT--SGGG-EEEEESS-TTCCCC-----GCEEEEEEEEEESTTTSEEEEEEEEEEEETTTTTEEEEEEE
T ss_pred CCcEEEEEEecCCCCccCCceECcccCCCCCCCC-----ccCcEecCceEEcCCCCeEEEEEeecccCCCcchhhhhhhH
Confidence 44578899888887 8999999998654300 2456799999996558999999987432 122233
Q ss_pred -EEEEEeCC----CCCCceeccccCCCC-----------CCccCceEEEc-CCCcEEEEEEecC----------------
Q 012300 256 -VGVAISDY----PTGPFDYLYSKRPHG-----------FDSRDMTIFKD-DDGVAYLVYSSED---------------- 302 (466)
Q Consensus 256 -IGVA~Sds----P~GPf~~~~~~~p~g-----------~~~iDp~vF~D-dDG~~YL~~g~~~---------------- 302 (466)
+|.+.+++ ..|.-....-+.+.| +..+||.+|+| .+|+.||+|.+..
T Consensus 169 ~~g~~~~d~~~v~i~g~~~~~~lfe~DG~~Yqt~~Q~~~~afRDP~~f~DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~ 248 (428)
T PF02435_consen 169 TLGLIHADDDGVWITGFSNHHELFEGDGKHYQTYEQNPGYAFRDPHVFEDPEDGKRYLVFEGNTGGERNWANYGGDDLGN 248 (428)
T ss_dssp EEEEEEECSTEEEEEEEEEEEEEES--SSSB--HHHHHH---EEEEEEEETTTTEEEEEEEEEBSTTSBGGGT-SHHHHH
T ss_pred hcCeeecCCCceeEccccceeEeeccchhhhhChhhcCCccccCCeeEECCCCCcEEEEEecccCCCCCccccCcccccc
Confidence 44455554 222111111123333 46799999999 7999999998742
Q ss_pred -------------------CCcEEEEEcCCCCCCccccEEEee----cCceeeeeEEEEECCEEEEEEeC-CCCC-----
Q 012300 303 -------------------NSELHIGPLTSDYLDVSNVVRRIL----VGQHREAPALFKHLGTYYMVTSG-CTGW----- 353 (466)
Q Consensus 303 -------------------n~~i~i~~Ls~D~~~~~g~~~~i~----~g~~~EgP~ifK~~G~YYL~yS~-~tg~----- 353 (466)
|+.|-|++|+.+..+...-...|+ ....+|-|.|+++||+||||.+. ....
T Consensus 249 ~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~~~~w~~~~PL~~a~~v~de~ERP~iv~~~gkyYLFt~s~~~~~a~g~~ 328 (428)
T PF02435_consen 249 VPGDPKLENNDNKSGASYANGAIGIAKLTNDDGTVWELLPPLLSANGVNDELERPHIVFMNGKYYLFTISHLSTFADGIV 328 (428)
T ss_dssp HHHHHHHHHSCCHHHHHH-EEEEEEEEESTTTTSEEEEEEEEEEETTTBS-EEEEEEEEETTEEEEEEEEEGGGBSTTHH
T ss_pred ccccccccccccccccceecceeeeEEecCCCCCccEEeCcceecccccccccCCcEEEECCEEEEEEEeccccccCCcc
Confidence 124778999887653322222332 34689999999999999999962 1111
Q ss_pred CCCcEEEEE-eCCCCCCceeC-CCccccCCc-cceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCC-CCe-eEEEE-
Q 012300 354 APNEALVHA-AESIMGPWEDM-GNPCIGGNK-VFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLR-ESR-YIWLP- 427 (466)
Q Consensus 354 ~~n~~v~~~-Sds~~GPw~~~-gnPi~~~~~-~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~-~~R-~v~lP- 427 (466)
.++...+.. ++++.|||+.. |.-++-+++ .-....+.+.++++++. | ...+|. +-+...+.. .++ ..+.|
T Consensus 329 g~d~~yg~~~~~~L~g~y~PLNgsGlVl~np~~~~p~~~qtYS~~~~p~-~--~v~sf~-~~~~~~~~~~~~~ggT~APt 404 (428)
T PF02435_consen 329 GPDGVYGFVVSDSLRGPYKPLNGSGLVLGNPPSQAPWRTQTYSHYVMPD-G--DVVSFI-DYMTNRGEVAYRFGGTFAPT 404 (428)
T ss_dssp TTSEEEEEEEESSTTS--EEGCCTSEEEEESTTSTTSTTCEEEEEEECC-S--CEEEEE-EEESSTTSSSTSECSEE-EE
T ss_pred CCCeEEEEEECccccCCceecCCCceEecCCCCCCCccceeeEEEEECC-C--cEEEEE-eccccccccccccCCeeCCe
Confidence 133344444 56699999987 443332222 10012255557888876 4 333333 333322222 122 26777
Q ss_pred --EEEcC
Q 012300 428 --LIVRG 432 (466)
Q Consensus 428 --l~~~~ 432 (466)
|.+++
T Consensus 405 ~~l~i~g 411 (428)
T PF02435_consen 405 FLLQING 411 (428)
T ss_dssp EEEEEET
T ss_pred EEEEEcC
Confidence 55666
No 47
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=99.37 E-value=3.8e-12 Score=126.11 Aligned_cols=213 Identities=21% Similarity=0.242 Sum_probs=129.1
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 137 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg 137 (466)
+++..|+||++|+.++..++... .+.+.. .+..|||.|... +-.+.+.|+ ...+-..+...-...-.|.
T Consensus 35 i~v~~S~DL~~W~~~g~~~~~~~---~~~~~~-~~~~WAP~i~~~---~g~yy~y~~----~~~~~~~~~~~va~a~~~~ 103 (286)
T PF04616_consen 35 IPVWSSKDLVNWTDAGNVLPPPP---DWDWAN-NGNIWAPEIHYI---NGKYYMYYS----DSGGDAGSGIGVATADSPD 103 (286)
T ss_dssp EEEEEESSSSSEEEEEECESSTT---TTSTTT-SETTEEEEEEEE---TTEEEEEEE----EESTSTTEEEEEEEESSTT
T ss_pred EEEEECCCCcccccceeeecccc---cccccc-cccccCCeEEEc---CCeEEEEEE----ccCCCCCcceeEEEeCCcc
Confidence 45677899999999998887752 122221 223399998866 667744444 1011111111111111244
Q ss_pred ceeeCCCCCe---EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEec-eeccCC
Q 012300 138 RIWLDTEGAP---IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEG-IVLAAE 212 (466)
Q Consensus 138 ~~w~dt~Gnp---I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g-~vL~~~ 212 (466)
.+|.+....+ ..+.|++|+.+++ |++||+-....... ....+.+.+ +.|+..+.... .++...
T Consensus 104 Gp~~~~~~~~~~~~~~iD~~vf~d~d-G~~Yl~~~~~~~~~-----------~~~~i~~~~l~~d~~~~~~~~~~~~~~~ 171 (286)
T PF04616_consen 104 GPWTDPGKIPIPGGNSIDPSVFVDDD-GKYYLYYGSWDNGD-----------PGGGIYIAELDPDGTSLTGEPVVVIFPG 171 (286)
T ss_dssp S-EEEEEEEEEESSSSSSEEEEEETT-SEEEEEEEESTTTS-----------SEEEEEEEEEETTTSSEEEEECEEEEEE
T ss_pred cccccccceeeccccccCceEEEecC-CCcEEeCcccCCCc-----------cceeEEeecccCccccccCccccccccc
Confidence 5665432111 1357899998864 77877765432110 012344444 56777777766 333222
Q ss_pred CcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCC--------CCCCccCc
Q 012300 213 ETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRP--------HGFDSRDM 284 (466)
Q Consensus 213 ~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p--------~g~~~iDp 284 (466)
.. ......+++|.+++ ++|+|||+|+...... ..++++|+|++|.|||+......+ .....-..
T Consensus 172 ~~-----~~~~~~~Egp~~~k--~~g~yYl~~s~~~~~~-~y~v~~~~s~~~~gp~~~~~~~~~~~~~~~~~~~~g~gH~ 243 (286)
T PF04616_consen 172 DE-----GWDGGVVEGPFVFK--HGGKYYLFYSAGGTGS-PYQVGYARSDSPLGPWEWKKGNPILFSRDGENGVYGPGHG 243 (286)
T ss_dssp SG-----SSTTTBEEEEEEEE--ETTEEEEEEEESGSST-TTEEEEEEESSTTSGGEETTTCBCEGTTBTTSSCEEEEEE
T ss_pred cc-----ccCCccccceEEEE--cCCCEEEEEeccCCCC-CceEEEeeccCCCCceeeccCCeEEEeeccCCccccCccC
Confidence 21 12356799999996 8999999999765443 378999999999999997532111 11345678
Q ss_pred eEEEcCCCcEEEEEEec
Q 012300 285 TIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 285 ~vF~DdDG~~YL~~g~~ 301 (466)
++|+++||+.||+|...
T Consensus 244 ~~~~~~~g~~~~~yh~~ 260 (286)
T PF04616_consen 244 SVFKDPDGRWYIVYHAR 260 (286)
T ss_dssp EEEEETTSEEEEEEEEE
T ss_pred CEEECCCCCEEEEEeec
Confidence 89999999999999875
No 48
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.37 E-value=2.1e-11 Score=122.03 Aligned_cols=212 Identities=16% Similarity=0.114 Sum_probs=122.3
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcc-cccCCCcccceeeeeccCCcceEEeeeCCCCccCCCC-CccCCCceeee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRA-AKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPM-KDNGNDSFYYY 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~-~~~~~~~~~i~ 135 (466)
+.+..|+||++||+++.+++.+. ..|.. ....+..|||.|... +..+.+.|+. .+.. .+...-...-.
T Consensus 33 i~~~~S~Dl~~W~~~g~~~~~~~--~~~~~~~~~~~~~WAP~v~~~---~g~yy~yy~~-----~~~~~~~~~~v~~s~~ 102 (288)
T cd09000 33 VPIFHSKDLVNWELIGHALTRPS--QLDLDGLPDSGGIWAPTIRYH---DGTFYLITTN-----VDGMKDGGNFIVTADD 102 (288)
T ss_pred ceEEECCCcCCcEEcccccCCcc--cccccCCCCCCceEcceEEEE---CCEEEEEEEe-----cCCCCCCceEEEEeCC
Confidence 56678999999999999997652 11210 013557899999877 6777666662 2210 11110111122
Q ss_pred cCceeeCCCCCeEEeeCCceEEECCCCEEEEE-EEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEece--eccCC
Q 012300 136 PGRIWLDTEGAPIQAHGGGILYDERSRTYFWY-GEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI--VLAAE 212 (466)
Q Consensus 136 pg~~w~dt~GnpI~ahd~~Ii~~~~~g~YYly-gT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~--vL~~~ 212 (466)
|..+|.+.--..-.+.|++++.++ +|+.|++ +.......+ ....++.+.+.+ ...|+..+. .+...
T Consensus 103 p~gpw~~~~~~~~~~iDp~vf~d~-dG~~Y~~~~~~~~~~~~---------~~~~~i~~~~l~-~~~~~~~~~~~~~~~~ 171 (288)
T cd09000 103 PAGPWSDPVWLDSGGIDPSLFFDD-DGKVYLVGNGWDERRGY---------NGHGGIWLQEID-LETGKLLGEPKVIWNG 171 (288)
T ss_pred CCCCCcCCEecCCCccCCceeEcC-CCCEEEEecccCCcccc---------CCCCcEEEEEEc-cccCCCCCCcEEEEeC
Confidence 555665311000035689998874 5776665 332111000 011345565543 233433221 11111
Q ss_pred CcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--c-C----CCC--CCccC
Q 012300 213 ETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--K-R----PHG--FDSRD 283 (466)
Q Consensus 213 ~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~-~----p~g--~~~iD 283 (466)
. ....+++|.|++ ++|+|||+|+..... ....+++|+|++|+|||++... . . ..+ ...-.
T Consensus 172 ~--------~~~~~Egp~v~k--~~g~YYl~ys~~~~~-~~~~v~~~~s~~~~Gp~~~~~~~~il~~~~~~~~~~~g~gH 240 (288)
T cd09000 172 T--------GGRWPEGPHLYK--RDGWYYLLIAEGGTG-YGHSVTVARSRSITGPYEPAPNNPILTNRDLPDSPIQATGH 240 (288)
T ss_pred C--------CCCCcccCeEEE--ECCEEEEEEecCCCC-CCeEEEEEEeCCCCCCCccCCCCceEEcCCCCCCcceeCCc
Confidence 0 124689999996 899999999864332 2368999999999999997421 1 0 011 13446
Q ss_pred ceEEEcCCCcEEEEEEec
Q 012300 284 MTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 284 p~vF~DdDG~~YL~~g~~ 301 (466)
.++|+++||+.|++|.+.
T Consensus 241 ~~~~~~~dG~~~~~yH~~ 258 (288)
T cd09000 241 ADLVQTPDGEWWAVFLAT 258 (288)
T ss_pred cceEECCCCCEEEEEEEE
Confidence 779999899999999864
No 49
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=99.36 E-value=5.9e-11 Score=116.08 Aligned_cols=212 Identities=18% Similarity=0.141 Sum_probs=128.1
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee--
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY-- 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~-- 135 (466)
+.+..|.||++|+..+.+++..... +.+. ..+..|||.|... +-.+.+.|+.... +... ..+.+.
T Consensus 26 i~i~~S~Dl~~W~~~~~~~~~~~~~--~~~~-~~~~~waP~v~~~---~g~yyl~y~~~~~---~~~~----~~i~~a~s 92 (271)
T cd08978 26 VQVWSSKDLVNWRYEGAVFVAWRGR--GEAK-DSGGLWAPEVIYY---EGKYYLYYSVSDF---DYNG----SGIGVATS 92 (271)
T ss_pred EEEEECCccCCcEECCccccccccc--CCcc-cCCceeCCeEEEE---CCEEEEEEEcccC---CCCc----ccEEEEEC
Confidence 4556789999999999888632101 1222 2568999998877 5667566662211 0000 111111
Q ss_pred --cCceeeCC-----CCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEecee
Q 012300 136 --PGRIWLDT-----EGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIV 208 (466)
Q Consensus 136 --pg~~w~dt-----~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~v 208 (466)
|-+.|.+. ......+.|+.++.++ +|++||+-...... ....++.+.++++...|.....+
T Consensus 93 ~d~~g~~~~~~~~~~~~~~~~~iDp~vf~d~-dg~~yl~~~~~~~~-----------~~~~~i~~~~l~~~~~~~~~~~~ 160 (271)
T cd08978 93 EDPTGPFEDKVIRPPTSNNGNSIDPTVFKDD-DGKYYLYYGSGDPG-----------AGFGGIYISELTDDLTKPTGPPV 160 (271)
T ss_pred CCCCCCccccccCcCccCCCCccCcceEEcC-CCCEEEEEecccCC-----------CCCCcEEEEEECcccccccCCce
Confidence 22223221 0111124688998875 48888885532110 01245778887765554333222
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc------C-C-CCCC
Q 012300 209 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK------R-P-HGFD 280 (466)
Q Consensus 209 L~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~------~-p-~g~~ 280 (466)
+.. +. ......+++|.+++ ++|+|||+|+..........+++|+|++|.|||+..... . . ....
T Consensus 161 ~~~----~~--~~~~~~~EgP~~~k--~~g~yyl~ys~~~~~~~~y~~~~~~s~~~~Gp~~~~~~~~~~~~~~~~~~~~~ 232 (271)
T cd08978 161 LSA----SS--GNNNAVTEGPTIFK--KNGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNAGLESDSAGFVGVG 232 (271)
T ss_pred eee----ee--ccCCCceEccEEEE--ECCEEEEEEEeCCCCCCCceEEEEECCCCCCCcCcCCCCcceEeccCCCcccc
Confidence 210 10 11345789999997 789999999986442245789999999999999975332 0 1 1235
Q ss_pred ccCceEEEcCCCcEEEEEEecC
Q 012300 281 SRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 281 ~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
....++|.+++|+.|++|....
T Consensus 233 ~gh~~~~~~~~g~~~~~yh~~~ 254 (271)
T cd08978 233 LGHGSVVRDKNGEWYLVYHAYN 254 (271)
T ss_pred CCCceEEECCCCCEEEEEEeec
Confidence 6788999988899999998753
No 50
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=99.34 E-value=2.4e-11 Score=121.51 Aligned_cols=200 Identities=16% Similarity=0.093 Sum_probs=116.3
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCc-cCCCceeeec
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKD-NGNDSFYYYP 136 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~-~~~~~~~i~p 136 (466)
+....|+||++||.++.++|.. .+..|||.|.+. +-.+.+.|+ +.+.... ...-+..-.|
T Consensus 40 i~i~~S~DL~~W~~~g~~~~~~-----------~~~~WAP~i~~~---~gkyy~yys-----~~~~~~~~~~~va~ad~p 100 (280)
T cd09002 40 LVIWHSRDLVNWTPVGPALPEY-----------EGDVWAPDLCKY---DGRYYIYFP-----AIPEGGNWTNMVIWADSP 100 (280)
T ss_pred EEEEECCCcCCceEccccccCC-----------CCCEEcCeeEEE---CCEEEEEEE-----eecCCCCceEEEEEECCC
Confidence 4556799999999999877652 346899998776 777745555 2221111 0111122235
Q ss_pred CceeeCCC-CCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCC-C-
Q 012300 137 GRIWLDTE-GAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAE-E- 213 (466)
Q Consensus 137 g~~w~dt~-GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~-~- 213 (466)
..+|.+.- -+.-.+.|++++.++ +|++|||-.. . ..+--+.|+..-+.+...+... +
T Consensus 101 ~Gpw~~~~~~~~~~~IDp~vf~Dd-dG~~Yl~~~~--~-----------------~~~~l~~d~~~~~g~~~~~~~~~~~ 160 (280)
T cd09002 101 EGPWSKPIDLKIGGCIDPGHVVDE-DGNRYLFLSG--G-----------------DRVRLTADGLSTDGKLEHVYDGWRY 160 (280)
T ss_pred CCCCcCCEecCCCCccCCceEEcC-CCCEEEEECC--e-----------------eEEEECccccEecCcCEEEecCccc
Confidence 56676521 011114688988874 6899998321 0 0011133443222111111110 0
Q ss_pred -cccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCC--CcceEEEEEeCCCCCCceecccc-----CC-C-C-CCcc
Q 012300 214 -TNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNY--TKAAVGVAISDYPTGPFDYLYSK-----RP-H-G-FDSR 282 (466)
Q Consensus 214 -~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~--~~~~IGVA~SdsP~GPf~~~~~~-----~p-~-g-~~~i 282 (466)
..|. ..+..++||.+++ ++|+|||+|+...... ....++||+|++|.|||++.... .. . + ...-
T Consensus 161 ~~~~~---~~~~~~Egp~~~k--~~g~YYl~yS~g~~~~~~~~~~v~~ars~s~~GP~~~~~~~pi~~~~~~~~~~~g~G 235 (280)
T cd09002 161 PEDWV---VEGFALEGPKLKK--RNGYYYLTTAVGGTAGPPTGHMVVAARSKSVHGPWENSPYNPLVRTQSPQEPWWSKG 235 (280)
T ss_pred ccccc---cCCcccccceEEE--ECCEEEEEEccCCCCCCCCCEEEEEEECCCCCCCCccCCCCcEEecCCCCCCceeCC
Confidence 0111 1233589999996 8999999998643221 13568999999999999975311 00 0 1 1335
Q ss_pred CceEEEcCCCcEEEEEEec
Q 012300 283 DMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 283 Dp~vF~DdDG~~YL~~g~~ 301 (466)
..+||.++||+.|++|.+.
T Consensus 236 H~~i~~~~~g~~~~vyH~~ 254 (280)
T cd09002 236 HATLVDGPDGQWWMVYHAY 254 (280)
T ss_pred CCcEEECCCCCEEEEEEee
Confidence 7789998899999999864
No 51
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.34 E-value=7.3e-11 Score=117.98 Aligned_cols=209 Identities=18% Similarity=0.148 Sum_probs=118.8
Q ss_pred ecCccccchhhhhhccccCCCCCC-CCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCc--cCCCceee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRG-KRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKD--NGNDSFYY 134 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~--~~~~~~~i 134 (466)
+.+..|+||++||.++.+++.+.. .....+. ..+..|||.|... +-.+.+.|+.. +.... ...-+.+-
T Consensus 22 i~i~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~-~~~~~wAP~v~~~---~g~yyl~ys~~-----~~~~~~~~i~va~s~ 92 (288)
T cd08998 22 IAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPG-GSGNLWAPDVIYL---NGKYYLYYSVS-----TFGSNRSAIGLATSD 92 (288)
T ss_pred eEEEECCCCCCcEECCccccCCCccccccccC-CCCCccCCeEEEE---CCEEEEEEEEE-----eCCCCceEEEEEEeC
Confidence 456789999999999999877621 0001122 2568999988776 66665555521 11100 00000111
Q ss_pred ec-CceeeCCC-------C-CeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCC---CCC
Q 012300 135 YP-GRIWLDTE-------G-APIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKD---MWT 201 (466)
Q Consensus 135 ~p-g~~w~dt~-------G-npI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~D---Lv~ 201 (466)
.| -.+|.+.. + +...+.|+.|+.++ +|++||+-.... .++.+.+ +.| .+.
T Consensus 93 ~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~-dG~~Yl~~~~~~----------------~~i~~~~l~~~~~~~~~ 155 (288)
T cd08998 93 TLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDE-DGKLWLSFGSFW----------------GGIFLVELDPKTGKPLY 155 (288)
T ss_pred CCCCCCCEEcceeeecCCCCCCcccccCCEEEcC-CCCEEEEeeecc----------------CCEEEEEeCcccCCccC
Confidence 12 23454321 0 11235688998874 688888743211 1222322 222 123
Q ss_pred CEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceeccccC--C
Q 012300 202 WKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYSKR--P 276 (466)
Q Consensus 202 W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~---~~~~~IGVA~SdsP~GPf~~~~~~~--p 276 (466)
|...+..+..... ....+++|.+++ ++|+|||+|+..... ....+++||+|++|.|||++..... .
T Consensus 156 ~~~~~~~i~~~~~-------~~~~~Egp~~~k--~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~~~g~~~~~ 226 (288)
T cd08998 156 PGGYGYNIAGRPR-------GHGAIEAPYIIY--RGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSITGPYVDRNGNDMLN 226 (288)
T ss_pred CCCcceEEeccCC-------CCCceeeeEEEE--eCCEEEEEEEcchhcCCCCCceEEEEEEcCCCCCCcCCCCCCchhh
Confidence 3211221211110 134689999996 899999999864321 2356899999999999999642110 0
Q ss_pred ----------C-C-CCccCceEEEcCCCcEEEEEEec
Q 012300 277 ----------H-G-FDSRDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 277 ----------~-g-~~~iDp~vF~DdDG~~YL~~g~~ 301 (466)
. + ......++|+++||+.||+|...
T Consensus 227 ~~~~~~~~~~~~~~~g~GH~~~~~~~~g~~~~~yH~~ 263 (288)
T cd08998 227 GGGTLYLLSSNGGYVGPGHNSVFTDDDGKDYLVYHYY 263 (288)
T ss_pred CCCcceeeccCCeEEcCCCCEEEECCCCCEEEEEEEE
Confidence 0 1 12357799999899999999875
No 52
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=99.34 E-value=4.4e-11 Score=118.86 Aligned_cols=204 Identities=11% Similarity=0.005 Sum_probs=119.6
Q ss_pred cCccccchhhhhhccccCCCCCCCCCCccc----ccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceee
Q 012300 59 HNPSFRELVEVEEENIQIPPPRGKRSPRAA----KRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY 134 (466)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i 134 (466)
.+..|+||++||..+.+++.. |.+. ...+..|||.|.+. +-.+.+.|+.... .... ...-+..-
T Consensus 34 ~~~~S~DL~~W~~~g~~~~~~-----~~~~~~~~~~~~~~WAP~v~~~---~G~yy~yy~~~~~---~~~~-~i~va~sd 101 (269)
T cd08989 34 QIHHSTDLVNWHLIGHPLDRL-----EDLDMKGNPYSGGIWAPCLSYY---DGKFWLIYTAVKV---WKDC-HNYLFTAE 101 (269)
T ss_pred EEEECCccCCCEEccccccCc-----cccccccCCCCCcEEcceEEEE---CCEEEEEEecccc---CCCc-eEEEEEEC
Confidence 457899999999999888654 2221 11457899999887 7778666662211 0000 01011111
Q ss_pred ecCceeeCCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEeceeccCCC
Q 012300 135 YPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGIVLAAEE 213 (466)
Q Consensus 135 ~pg~~w~dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~vL~~~~ 213 (466)
.|..+|.+.-.....+.|++++.|+ +|+.||+... | .++.+.+ +.|+..-...... .
T Consensus 102 ~~~Gpw~~~~~~~~~~IDp~~f~D~-dG~~Yl~~~~---------~--------~~i~l~~l~~~~~~~~~~~~~----~ 159 (269)
T cd08989 102 DITGPWSRPIFLNYGGFDPSLFHDD-DGKKYLINMG---------W--------SGIRLQEYSPAEKKLIGKPLN----K 159 (269)
T ss_pred CCCCCCcCCEECCCCcccCceEEcC-CCCEEEEecC---------C--------CcEEEEEEChhhCCCCCCcee----E
Confidence 3556676521111235789988874 6888887321 1 1233433 2232211110000 0
Q ss_pred cccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC------CCC--CCccCce
Q 012300 214 TNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR------PHG--FDSRDMT 285 (466)
Q Consensus 214 ~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~------p~g--~~~iDp~ 285 (466)
..+. ......+++|.+++ ++|+|||+++.....+ ...++||+|++|.|||++..... +.+ ...-..+
T Consensus 160 ~~~~--~~~~~~~Egp~~~k--~~G~YYl~~S~~~~~~-~~~~~~~rs~~~~GP~~~~~~~pl~~~~~~~~~~~g~GH~s 234 (269)
T cd08989 160 VIIK--GTDDGLTEGPHLYK--INGKYYLTTAEGGTGY-IHEETIARSDKIHGPYEGRPDNPLVLWDTPGNPLQKCGHAS 234 (269)
T ss_pred EEec--CCCCCccccceEEE--ECCEEEEEEeeCCCCC-CeeEEEEEECCCCCCCCcCCCCcceeecCCCCCcccCCCcC
Confidence 0000 01234689999996 8999999999754332 34789999999999999754310 111 2345678
Q ss_pred EEEcCCCcEEEEEEec
Q 012300 286 IFKDDDGVAYLVYSSE 301 (466)
Q Consensus 286 vF~DdDG~~YL~~g~~ 301 (466)
+|+++||+.|++|...
T Consensus 235 ~v~~~~G~~~~~~h~~ 250 (269)
T cd08989 235 LVETPDGKWYLAHLTG 250 (269)
T ss_pred eEECcCCCEEEEEEee
Confidence 8998899999999864
No 53
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.33 E-value=3.7e-11 Score=119.40 Aligned_cols=200 Identities=14% Similarity=0.018 Sum_probs=119.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCC-CCcccc---cCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCcee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKR-SPRAAK---RRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFY 133 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~p~~~~---~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~ 133 (466)
+....|.||++||..+.+++.+.... .+.|.+ ..+..|||.|... +-.+.+.|+. .+....+ ...
T Consensus 36 i~v~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~WAP~v~~~---~gkyy~yys~-----~~~~~~v---~~a 104 (269)
T cd09001 36 APILHSKDLVNWEIIGYVYDRLDDGDAYNLENGGNAYGKGQWAPSLRYH---NGTFYVFFCT-----NTGGTYI---YTA 104 (269)
T ss_pred CEEEEcccccCCeEcccccccccccccccccccCCCCCCCEECCceEEE---CCEEEEEEEe-----cCCCeEE---EEc
Confidence 44567999999999998886541000 011211 1346899999887 6677555552 1111111 111
Q ss_pred eecCceeeCCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEece-eccC
Q 012300 134 YYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGI-VLAA 211 (466)
Q Consensus 134 i~pg~~w~dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~-vL~~ 211 (466)
-.|-.+|.+.. ....+.|+++..|+ +|+.||+-.. .++.+.+ +.|+........ ++..
T Consensus 105 ~~p~Gpw~~~~-~~~~~iDp~~f~D~-dG~~Yl~~~~------------------~~i~~~~l~~d~~~~~~~~~~~~~~ 164 (269)
T cd09001 105 DDPEGPWTKTA-LDGGYHDPSLLFDD-DGTAYLVYGG------------------GTIRLVELSPDLTGVGGKDQVIIDA 164 (269)
T ss_pred CCCCCCCcCCC-cCCCcccCceEEcC-CCCEEEEeCC------------------CcEEEEEECcccCCcCCCceEEEeC
Confidence 23556776532 11145688888875 6777776321 0233333 567766633222 2222
Q ss_pred CCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC-CC-C-CCccCceEEE
Q 012300 212 EETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-PH-G-FDSRDMTIFK 288 (466)
Q Consensus 212 ~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-p~-g-~~~iDp~vF~ 288 (466)
... ....++||.+++ ++|+|||+|+... .....++||+|++|.|||+...... +. . ......++|.
T Consensus 165 ~~~-------~~~~~Egp~i~k--~~G~YYl~~S~~~--~~~~~~~~~~s~~~~GP~~~~~~~~~~~~~~~~~gh~~~~~ 233 (269)
T cd09001 165 GEE-------IGLGAEGSHLYK--INGYYYIFNIAWG--GGGRTQTCLRSKSLTGPYESKVVLEDGSTGGNGPHQGGIVD 233 (269)
T ss_pred CCc-------cccccccCeEEE--ECCEEEEEEecCC--CCCceEEEEEeCCCCCCcCCcceecCCCCCCCCCCCEEEEE
Confidence 111 135689999996 8999999999754 1235788999999999999753221 11 1 1234456888
Q ss_pred cCCCcEEEEEE
Q 012300 289 DDDGVAYLVYS 299 (466)
Q Consensus 289 DdDG~~YL~~g 299 (466)
++||+.|+++.
T Consensus 234 ~~~G~~~~~~~ 244 (269)
T cd09001 234 TPDGEWYFMLF 244 (269)
T ss_pred CCCCCEEEEEc
Confidence 88999887765
No 54
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.25 E-value=2.7e-10 Score=114.90 Aligned_cols=198 Identities=15% Similarity=0.144 Sum_probs=111.2
Q ss_pred CccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeeecC-c
Q 012300 60 NPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG-R 138 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg-~ 138 (466)
+..|+||++||..+.++. .+..|||.|... +-.+...++.+ ...+. ..-.|- .
T Consensus 25 i~~S~DL~~W~~~g~~~~-------------~~~~WAP~i~~~---~g~~Y~~~~~~-------~~~v~---~s~~p~gp 78 (295)
T cd08982 25 YWHSSDLIDWDFIPTNSL-------------PDEGYAPAVFVY---DGTLYYTASTY-------NSRIY---KTADPLSG 78 (295)
T ss_pred eEECCCcCCceECCcccC-------------CCCcCcCEEEEE---CCEEEEEEeCC-------CceEE---EeCCCCCC
Confidence 467999999999997653 347899999887 44443333311 11111 111232 2
Q ss_pred eeeCC-CCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEece-ecc--CCC
Q 012300 139 IWLDT-EGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGI-VLA--AEE 213 (466)
Q Consensus 139 ~w~dt-~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~-vL~--~~~ 213 (466)
.|.+. ......+.|++++.++ +|+.|++-..... .++.+.+ +.|+..-..+.. ++. ..+
T Consensus 79 ~w~~~~~~~~~~~IDp~vf~Dd-DGk~Yl~~g~~~~---------------~~i~~~eL~~d~~~~~g~~~~l~~~~~~~ 142 (295)
T cd08982 79 PWEEVDKSFPPGLADPALFIDD-DGRLYLYYGCSNN---------------YPLRGVEVDPDTFRPIGEPVELIPGNPDK 142 (295)
T ss_pred CccccccccCCCccCCceEECC-CCCEEEEEecCCC---------------CCeEEEEECcccCCccCcceEEEeCCCCC
Confidence 35442 1122346789998874 5777777422110 0122212 222221111111 111 111
Q ss_pred cccccc------cCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC----CCC--CCc
Q 012300 214 TNETHD------LYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR----PHG--FDS 281 (466)
Q Consensus 214 ~~~~~~------~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~----p~g--~~~ 281 (466)
..|... ......+++|.+++ ++|+|||+|++........+++||+|++|.|||+...... +.+ ...
T Consensus 143 ~~We~~g~~~~~~~~~~~~EGP~i~k--~~G~YYL~yS~~~~~~~~Y~v~~a~s~~p~GP~~~~~~~pil~~~~~~~~g~ 220 (295)
T cd08982 143 HGWERFGENNDNPDKTPWMEGAWMTK--HNGKYYLQYAAPGTEFNTYADGVYVSDSPLGPFTYQPHNPFSYKPGGFITGA 220 (295)
T ss_pred cCeEecCcccccccCCccccccEEEE--ECCEEEEEEeCCCcccCcEeEEEEEeCCCCCCCCcCCCCccccCCCCeEecC
Confidence 112110 00134689999996 8999999998754333456899999999999999754211 111 124
Q ss_pred cCceEEEcCCCcEEEEEEec
Q 012300 282 RDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 282 iDp~vF~DdDG~~YL~~g~~ 301 (466)
...++|++.||+.|++|...
T Consensus 221 GH~s~v~~~~G~~~~~yh~~ 240 (295)
T cd08982 221 GHGSTFQDKYGNYWHVGTMT 240 (295)
T ss_pred CcccEEECCCCCEEEEEEEE
Confidence 56779999999999998643
No 55
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.23 E-value=4e-10 Score=111.85 Aligned_cols=210 Identities=13% Similarity=0.069 Sum_probs=124.5
Q ss_pred EEecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee
Q 012300 56 HISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY 135 (466)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~ 135 (466)
.-.++..|+||++||.++.+|++... ..+.|. ....|+|.|..... +-.+ .||+.... .+-.....+-+..-.
T Consensus 30 ~gi~~~sS~DLvnW~~~g~vl~~~~~-~~~~~~--~~~~waP~v~y~~~-~g~Y-~m~~~~~~--~~~~~~~igvA~Sd~ 102 (265)
T cd08985 30 GGVSCYSSTDLVNWTFEGLALTPEED-SADLGP--GRIIERPKVIYNAK-TGKY-VMWMHIDS--SDYSDARVGVATSDT 102 (265)
T ss_pred ccEEEEECCCCccceECceecccccc-cccccc--CcEEECCeEEEeCC-CCEE-EEEEEeCC--CCCcceeEEEEEeCC
Confidence 44678889999999999999987621 112333 44789998776521 3455 55552211 000011111122223
Q ss_pred cCceeeCCCC-C--eEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEE-eCCCCCCEEeceeccC
Q 012300 136 PGRIWLDTEG-A--PIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGIVLAA 211 (466)
Q Consensus 136 pg~~w~dt~G-n--pI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLv~W~~~g~vL~~ 211 (466)
|-.+|.+... . ...+.|+++..|+ +|++||+-.... ..++.+.+ ++|+..+......+.
T Consensus 103 p~Gpf~~~~~~~~~~~~~~Dp~vf~Dd-DG~~Yl~~~~~~---------------~~~i~i~~L~~d~~~~~~~~~~~~- 165 (265)
T cd08985 103 PTGPYTYLGSFRPLGYQSRDFGLFVDD-DGTAYLLYSDRD---------------NSDLYIYRLTDDYLSVTGEVTTVF- 165 (265)
T ss_pred CCCCCEECCccCCCCCCccCCceEEcC-CCCEEEEEecCC---------------CCceEEEEeCCCcccccceEEEcc-
Confidence 6667765221 1 1225688988875 567777654221 12344544 468887765433211
Q ss_pred CCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccC---ceEEE
Q 012300 212 EETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRD---MTIFK 288 (466)
Q Consensus 212 ~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iD---p~vF~ 288 (466)
....++||.|++ ++|+|||+++... .+....+.+|+|++|.|||+..+...+.+..+.+ ..|+.
T Consensus 166 ----------~~~~~EaP~i~K--~~g~YYL~~S~~t-~~~~~~~~y~~s~s~~GP~~~~~~~~~~~~~t~~sq~~~v~~ 232 (265)
T cd08985 166 ----------VGAGREAPAIFK--RNGKYYLLTSGLT-GWNPNDARYATATSILGPWTDLGNPGPGGSTTYGSQTTFVLP 232 (265)
T ss_pred ----------CCCccccceEEE--ECCEEEEEEccCC-CccCCceEEEEecCCCCCccccCcCCCCCCcEECCCcceEEE
Confidence 235689999996 8999999998642 2234568999999999999987644333333333 33443
Q ss_pred cC--CCcEEEEEEecC
Q 012300 289 DD--DGVAYLVYSSED 302 (466)
Q Consensus 289 Dd--DG~~YL~~g~~~ 302 (466)
-. .++.||+++...
T Consensus 233 ~~g~~~~~~~~~~drw 248 (265)
T cd08985 233 VPGSKQTTYIYMGDRW 248 (265)
T ss_pred eCCCCCCEEEEEEccc
Confidence 22 238899998643
No 56
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.19 E-value=6.4e-10 Score=114.06 Aligned_cols=179 Identities=15% Similarity=0.203 Sum_probs=103.7
Q ss_pred EEEecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCc----cCCC
Q 012300 55 LHISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKD----NGND 130 (466)
Q Consensus 55 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~----~~~~ 130 (466)
.+.+.+..|+||++|++.+.+|++.. ...|.+ ..+|+|.|-+. +..+.+.|+ +...+... ..+-
T Consensus 78 ~y~I~~A~S~Dgv~W~~~g~~L~~~~---~g~Wd~--~~vwaP~Vi~~---dGkyYM~Ys----a~~~~~~~~~~~~IGv 145 (349)
T cd08992 78 KCEIWHATSKDGWTWKEEGPAIGRGE---KGAYDD--RSVFTPEVLEH---EGTYYLVYQ----VVKSPYLNRSFESIAM 145 (349)
T ss_pred ceEEEEEECCCCCCceECCccccCCC---CCCccc--cceECcEEEEE---CCEEEEEEE----ecccccCCCCcceEEE
Confidence 44566789999999999997775431 124764 46999988876 777867766 11111110 0111
Q ss_pred ceeeecCceeeCCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEe---ce
Q 012300 131 SFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNE---GI 207 (466)
Q Consensus 131 ~~~i~pg~~w~dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~---g~ 207 (466)
+..-.|-+.|.+ .++||++ -.+...|... +.
T Consensus 146 A~AdSp~GpWtr-~d~Pil~---------------------------------------------p~~dg~w~~d~~~~~ 179 (349)
T cd08992 146 AVADSPYGPWTK-SDEPILS---------------------------------------------PSNDGIWKGDEDNRF 179 (349)
T ss_pred EEECCccccccc-CCCcEec---------------------------------------------CCcCCceeeccCcee
Confidence 111112223332 1233321 1112233321 12
Q ss_pred eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC------CCcceEEEEEeCCCCCCceeccccCCCCCCc
Q 012300 208 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN------YTKAAVGVAISDYPTGPFDYLYSKRPHGFDS 281 (466)
Q Consensus 208 vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~------~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~ 281 (466)
++... .. ++...+++|.|++ .+|+|||||+++..+ ....+||||+|++|+|||+.... .|.-...
T Consensus 180 ~~~~~-g~-----wD~~~v~~P~v~~--~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~GPf~r~~~-nPi~~~~ 250 (349)
T cd08992 180 LVKKK-GS-----FDSHKVHDPCLFP--FNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPEGPYVKSPY-NPITNSG 250 (349)
T ss_pred EeccC-CC-----cccCceECCEEEE--ECCEEEEEEEccccCcccccCCCCceEEEEEECCCCCCCEeCCC-CcccCCC
Confidence 22211 11 2456799999997 799999999886421 23578999999999999997532 2221112
Q ss_pred cCceEEEcCCCcEEEEEEe
Q 012300 282 RDMTIFKDDDGVAYLVYSS 300 (466)
Q Consensus 282 iDp~vF~DdDG~~YL~~g~ 300 (466)
-..+|+.+.||-++|+-..
T Consensus 251 ~~~~~~~~~~~~~~~~~~d 269 (349)
T cd08992 251 HETCVWQYKGGIAAMLTTD 269 (349)
T ss_pred CceEEEecCCceEEEEecc
Confidence 2357888777777777654
No 57
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.08 E-value=7.3e-09 Score=103.58 Aligned_cols=217 Identities=13% Similarity=0.126 Sum_probs=120.3
Q ss_pred ecCccccchhhhhhccccCC-CCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceee--
Q 012300 58 SHNPSFRELVEVEEENIQIP-PPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY-- 134 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i-- 134 (466)
+....|+||++|+.++..++ .+ +.+....+..|||.|... +-.+.+.|+..... ....+...-...-
T Consensus 23 ~~i~~S~dl~~w~~~~~~~~~~~-----~~~~~~~~~~WAP~i~~~---~g~yylyys~~~~~--~~~~~~~~v~~a~~~ 92 (288)
T cd08980 23 IELRRSDTLAGLATAESKVVWTP-----PDSGPYSGNLWAPELHYI---DGKWYIYFAAGDGG--GNANHRMYVLENAGA 92 (288)
T ss_pred EEEEecCChhHhhcCCcEEEecC-----CCCCCccccEECceEEEE---CCEEEEEEEccCCC--CCcceeEEEEEeCCC
Confidence 34677999999998864322 11 111112457899999766 66775555511100 0000000000001
Q ss_pred -ecCceeeCCCCCe-----EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEecee
Q 012300 135 -YPGRIWLDTEGAP-----IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIV 208 (466)
Q Consensus 135 -~pg~~w~dt~Gnp-----I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~v 208 (466)
.|-.+|.+. +.. ..+.|++++.++ |++|++-....... ....++.+.+.+|...+..+..+
T Consensus 93 ~~~~Gpw~~~-~~~~~~~~~~~iDp~~~~dd--G~~Yl~~~~~~~~~----------~~~~~i~~~~l~~~~~~~g~~~~ 159 (288)
T cd08980 93 DPPTGPWTFK-GRLADPTDRWAIDGTVFEHN--GQLYFVWSGWEGRT----------NGNQNLYIAKMSNPWTLTGPRVL 159 (288)
T ss_pred CCCCCCceEe-eEeccCCCCeeeeeEEEEEC--CEEEEEEEccCCCC----------CCCccEEEEECCCCCccCCcceE
Confidence 144566653 111 124688888763 88887754322100 01234556666554455534444
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCC---CCC--ceeccc-c---CC--C
Q 012300 209 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYP---TGP--FDYLYS-K---RP--H 277 (466)
Q Consensus 209 L~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP---~GP--f~~~~~-~---~p--~ 277 (466)
+...+..|.. .....++||.+++ ++|+|||+|++........+++||+++++ .|| |+..+. . .. .
T Consensus 160 i~~p~~~we~--~~~~~~EgP~~~k--~~G~yYl~yS~~~~~~~~Y~v~~a~~~~~~~~~~~~~~~~~~~pil~~~~~~~ 235 (288)
T cd08980 160 ISRPEYDWER--QGPGVNEGPAALK--RNGKVFLTYSASGSWTPDYCLGLLTADGGADLLDPASWTKSPTPVFQSSPENG 235 (288)
T ss_pred ecCCCCCcee--cCceeeECcEEEE--ECCEEEEEEECCCCCCCCCEEEEEEEcCCCCCCChhhCcCCCCCceecCCCCc
Confidence 4433333321 1124689999997 88999999997654234578999998854 555 443221 1 01 1
Q ss_pred CCCccCceEEEcCCCc-EEEEEEec
Q 012300 278 GFDSRDMTIFKDDDGV-AYLVYSSE 301 (466)
Q Consensus 278 g~~~iDp~vF~DdDG~-~YL~~g~~ 301 (466)
-......++|+++||+ .||+|.+.
T Consensus 236 ~~g~GH~~iv~~~~G~~~~~~yH~~ 260 (288)
T cd08980 236 VYGPGHNSFTKSPDGTEDWIVYHAR 260 (288)
T ss_pred cCcCCccceEECCCCCEEEEEEccc
Confidence 1234688899999998 99999875
No 58
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=99.08 E-value=5.2e-09 Score=102.75 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=96.4
Q ss_pred EEecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee
Q 012300 56 HISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY 135 (466)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~ 135 (466)
...++..|+||++||..+.++|+. ..+.+. .+..++|-|.... +-.+.+.|+ + .+.. ......+.+.
T Consensus 33 ~~~~~a~S~D~~~w~~~~~~l~~~---~~~~~~--~~~~~~p~v~~~~--dg~~~~~Yt-~----~~~~-~~~~~~i~~A 99 (276)
T cd08979 33 SRIGAASSDDGTWWTRPPAPLPPG---PPGSFD--DGGVWTPSVVRDP--DGTYRMFYT-G----YDRP-KGAVQRIGLA 99 (276)
T ss_pred ceeEEEEcCCCCccEECCcCccCC---CCCchh--cCCeEcceEEEcC--CCeEEEEEe-c----ccCC-CCCcceEEEE
Confidence 346889999999999999888332 113333 4578889766552 255644554 2 1110 0000111111
Q ss_pred ---cCceeeCCCCCe---------------EEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeC
Q 012300 136 ---PGRIWLDTEGAP---------------IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSK 197 (466)
Q Consensus 136 ---pg~~w~dt~Gnp---------------I~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~ 197 (466)
.+..|.....++ ....||.|++++++|+|||+-+.... .....+.+++|+
T Consensus 100 ~S~D~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~------------~~~~~i~~a~S~ 167 (276)
T cd08979 100 TSKDLIHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDA------------DERGAIGLATSP 167 (276)
T ss_pred ECCCCCceEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEcc------------CCCcEEEEEECC
Confidence 223343322222 12368999988666999998664321 012458899999
Q ss_pred CCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeC
Q 012300 198 DMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDD 248 (466)
Q Consensus 198 DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~ 248 (466)
||++|+..+.++... ..+ ....+++|.+++ .+|+|||+|+...
T Consensus 168 D~~~W~~~~~~~~~~-~~~-----~~~~~e~P~~~~--~~g~~~l~~~~~~ 210 (276)
T cd08979 168 DLIHWTPVPPPPGPR-TGY-----DDGQLEVPQVVK--IDGRWYLLYSGRN 210 (276)
T ss_pred CCCcceECCCCCCCC-Ccc-----cCCcCccceEEE--ECCEEEEEEEecC
Confidence 999999988653111 111 245689999996 7899999999764
No 59
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=99.06 E-value=7.1e-09 Score=103.92 Aligned_cols=205 Identities=17% Similarity=0.219 Sum_probs=124.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee--
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY-- 135 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~-- 135 (466)
.-|..|+||+||++.+.+|+|. .... .+..|++-+-.- ++..+.+.|| +.... +... .....+.+.
T Consensus 34 wgha~S~Dlv~W~~~~~al~p~------~~~d-~~g~~sGsav~~--~~g~~~~~YT-g~~~~-~~~~-~~~~~lA~S~d 101 (298)
T cd08996 34 WGHATSKDLVHWEHLPVALAPD------DPYD-SGGCFSGSAVVD--DNGKLVLFYT-GNVKL-DGGR-RQTQCLAYSTD 101 (298)
T ss_pred EEEEEecCccceeECCcccCCC------Cccc-CCeEEeCeEEEc--CCCcEEEEEe-ceeCC-CCCc-eEEEEEEEEcC
Confidence 4469999999999999999763 2222 345677754432 2255656666 11100 0000 111111222
Q ss_pred cCceeeCCCCCeEE---------eeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEec
Q 012300 136 PGRIWLDTEGAPIQ---------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEG 206 (466)
Q Consensus 136 pg~~w~dt~GnpI~---------ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g 206 (466)
.+..|.....+|+. .+||.|++++ |+|||+-+.... .....+.+|+|+||.+|+..+
T Consensus 102 dg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~--g~~~m~~g~~~~------------~~~~~i~ly~S~Dl~~W~~~~ 167 (298)
T cd08996 102 DGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHD--GKWYMVLGAGTE------------DGTGRILLYRSDDLKNWEYLG 167 (298)
T ss_pred CCCEEEECCCCceEcCCCCCCCcccCCeEEeEC--CEEEEEEEEEec------------CCCcEEEEEECCCCCCCEEcc
Confidence 57778776667765 2699999875 899998664321 012468899999999999988
Q ss_pred eeccCCCcccccccCCCCeeeeceEEEEccC--CEEEEEEEEeCCCC--CcceEEEEEeCCCCCCceecc-c--cCCCCC
Q 012300 207 IVLAAEETNETHDLYKLNVLERPKVIYNDRT--GKYVMWMHIDDCNY--TKAAVGVAISDYPTGPFDYLY-S--KRPHGF 279 (466)
Q Consensus 207 ~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~--GkYyly~s~~~~~~--~~~~IGVA~SdsP~GPf~~~~-~--~~p~g~ 279 (466)
.+..... ..+...++|+++. .+ |+|||+|+...... ......+++.+-..+.|+... . ....|.
T Consensus 168 ~~~~~~~-------~~~~~~EcP~l~~--l~~~~k~vL~~s~~~~~~~~~~~~~~y~~G~~~~~~~~~~~~~~~~lD~G~ 238 (298)
T cd08996 168 ELLTSLG-------DFGYMWECPDLFP--LDVEGKWVLIFSPQGLEPEGNGSGTGYLVGDFDGTTFTFDHTEFGELDYGF 238 (298)
T ss_pred eecccCC-------CccceEeCCcEEE--ECCCCeEEEEECCCCCCCCCCccceEEEEEEEECCCCeEecCCceEecCCC
Confidence 7641111 1245678999996 77 99999998764321 224455666654445665421 1 112345
Q ss_pred CccCceEEEcCCCcEEEE
Q 012300 280 DSRDMTIFKDDDGVAYLV 297 (466)
Q Consensus 280 ~~iDp~vF~DdDG~~YL~ 297 (466)
...=|..|.|++|+..|+
T Consensus 239 dfYA~q~~~~~~~r~i~~ 256 (298)
T cd08996 239 DFYAPQTFVDPDGRRILI 256 (298)
T ss_pred CeEeCceeeCCCCCEEEE
Confidence 566677888877776554
No 60
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.03 E-value=9.8e-09 Score=103.22 Aligned_cols=194 Identities=14% Similarity=0.076 Sum_probs=117.3
Q ss_pred EecCccccc-hhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee
Q 012300 57 ISHNPSFRE-LVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY 135 (466)
Q Consensus 57 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~ 135 (466)
.+.+..|.| |++|+..+..+.+. +.|. ....|||.|-.+ +..+.+.|+-..+. +........+...
T Consensus 48 ~i~~a~S~D~l~~W~~~g~~~~~~-----~~~~--~~~~WAP~v~~~---~G~y~myys~~~~~---~~~~~~~~~i~~a 114 (294)
T cd08984 48 DIGVASSKDGGATWTYRGTADGLE-----FECG--RNTFWAPEVVWH---GGVYHMYVTYIPGV---PPDWGGPRRIVHY 114 (294)
T ss_pred eEEEEEeCCCCCCCEEeeeeccCC-----CCCc--ccceeCceEEEE---CCEEEEEEEecCCC---CcccCCCcEEEEE
Confidence 356788999 99999998655332 3454 335899998777 67774544411111 0000000111111
Q ss_pred cC---ceeeCCCCCe-E---EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEecee
Q 012300 136 PG---RIWLDTEGAP-I---QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIV 208 (466)
Q Consensus 136 pg---~~w~dt~Gnp-I---~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~v 208 (466)
.+ ..|... +.. + .+-|++++.+ ++|+||||-+.... ...+.+..|+||.+|+..+.+
T Consensus 115 ~S~Dl~~w~~~-~~~~~~~~~~iD~~vf~~-~dg~~yl~y~~~~~--------------~~~~~~a~s~D~~~w~~~~~~ 178 (294)
T cd08984 115 TSPNLWDWTFV-GRVDLDSDRVIDACVFKL-PDGRWRMWYKDERR--------------GSTTYAADSEDLYHWTVEGPV 178 (294)
T ss_pred ECCCcCcceEC-CccccCCCCcEEeEEEEe-CCCEEEEEEECCCC--------------CeEEEEEECCCCCEEEeCCcc
Confidence 11 224321 111 1 1246777765 36899999874321 123567789999999987655
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCC-------CCCCc
Q 012300 209 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRP-------HGFDS 281 (466)
Q Consensus 209 L~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p-------~g~~~ 281 (466)
+.. ...+.|.|++ .+|+|||++.. ...+++++|+++. +|++.+.... .+...
T Consensus 179 i~~------------~~~EgP~v~k--~~g~yym~~~~------~~g~~~~~S~D~~-~W~~~~~~l~~~~~~~~~~~~~ 237 (294)
T cd08984 179 LGD------------RPHEGPNVFR--WKGYYWMIIDE------WKGLGVYRSKDAE-NWERQGGILLKPGTRPDDGAKG 237 (294)
T ss_pred ccC------------CCCCCCCeeE--ECCEEEEEEcC------CceEEEEECCChh-hcEECCeeeccCCCCccccccc
Confidence 431 1126799996 78999998632 1358899999998 9998653211 13345
Q ss_pred cCceEEEcCCCcEEEEEEec
Q 012300 282 RDMTIFKDDDGVAYLVYSSE 301 (466)
Q Consensus 282 iDp~vF~DdDG~~YL~~g~~ 301 (466)
..++||+.+ |+.||+|...
T Consensus 238 ~H~~i~~~~-~~~y~~Yh~~ 256 (294)
T cd08984 238 RHADVVVTG-DRAYIFYFTH 256 (294)
T ss_pred cCCcEEEeC-CEEEEEEEec
Confidence 678999754 6999999864
No 61
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.00 E-value=4.1e-08 Score=98.14 Aligned_cols=178 Identities=19% Similarity=0.235 Sum_probs=108.2
Q ss_pred CeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceeccccC---CCCCCccCceEEEcC-CCcEEE
Q 012300 224 NVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLYSKR---PHGFDSRDMTIFKDD-DGVAYL 296 (466)
Q Consensus 224 ~~iWAP~viyn~~~GkYyly~s~~~~---~~~~~~IGVA~SdsP~GPf~~~~~~~---p~g~~~iDp~vF~Dd-DG~~YL 296 (466)
..+=-|.|++.+.+|+|||+++.... ......|.++.|++. -.|+..+... +.....-.|.+|.|+ +|++||
T Consensus 16 ~~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DL-v~W~~~~~~~~~~~~~~~~WAPev~~d~~~g~y~~ 94 (276)
T cd08983 16 KGLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDL-VNWTFQRLVKVNPPNAGNTWAPEAFWDAERGQYVV 94 (276)
T ss_pred CCccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcc-cCCcccceeecCCCCcCcEeCccceEcCCCCeEEE
Confidence 34556999985468999999986531 113467999999985 4788654321 112234589999985 899999
Q ss_pred EEEecCC------CcEEEEEcC-CCCCCccccEEEee-cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCC
Q 012300 297 VYSSEDN------SELHIGPLT-SDYLDVSNVVRRIL-VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMG 368 (466)
Q Consensus 297 ~~g~~~n------~~i~i~~Ls-~D~~~~~g~~~~i~-~g~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~G 368 (466)
+|+.... ....+.-.+ .|+.+++.. ..++ .+...=-+.||+.+|+|||+|..... .....++|+++.|
T Consensus 95 ~~s~~~~~~~~~~~~~~i~~~tt~Df~tft~p-~~~~~~~~~~ID~~v~~~~g~~Yl~~k~~~~---~~i~~~~s~~l~g 170 (276)
T cd08983 95 YWSSRLYDNTGGFYNYRLYATTTSDFVTFTEP-KVWIDLGANVIDTTVVKVGGTYYRFYKNEGS---KDIELARSKSLTG 170 (276)
T ss_pred EEecccCCCCCCCccEEEEEEecCcccccCCC-eEeecCCCCeEeeEEEEeCCEEEEEEecCCC---CcEEEEEeCCCCC
Confidence 9987421 122222223 477766543 2222 22222344799999999999986431 2334457999999
Q ss_pred CceeCCCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeC
Q 012300 369 PWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWN 414 (466)
Q Consensus 369 Pw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~ 414 (466)
||+.....+...+ ...-+..|++..+...||||+ |.+.
T Consensus 171 ~~~~~~~~~~~~~-------~~~EgP~v~k~~~~~~y~L~~-d~y~ 208 (276)
T cd08983 171 PWTIVGTGDAGWG-------GAVEGPTVFKLNNGGGWYLYG-DNYS 208 (276)
T ss_pred CceEecccccCCC-------CceeCCeEEEECCCCEEEEEE-EECC
Confidence 9998754322111 111223577776543555554 5554
No 62
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=98.91 E-value=4.8e-08 Score=100.40 Aligned_cols=194 Identities=15% Similarity=0.161 Sum_probs=112.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCcc--CCCCC--cc--C-C-
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTA--IDPMK--DN--G-N- 129 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~--~dp~~--~~--~-~- 129 (466)
+.|..|+||++|++.+..+|+ .+.. +...|++-+-. ..+..+.+.|| +.... ...+. .. . .
T Consensus 43 wgh~~S~dlv~W~~~~~l~p~-------~~~d-~~g~wSGsa~~--~~dg~~~lfYT-g~~~~~~~~~~~~Q~ia~a~~~ 111 (349)
T cd08997 43 IGYFYSRAGGNWIDGGKVFPD-------GLSP-GSREWSGSATL--DDDGTVQLFYT-AVGRKGEPQPTFTQRLALARGT 111 (349)
T ss_pred EEEEEeCCCCcccCCCccCCC-------Cccc-CCCeEcceEEE--eCCCeEEEEEe-ccccCCCCCCCceEEEEEEECC
Confidence 668899999999998877774 3444 34777774333 22456745555 32110 01000 00 0 0
Q ss_pred -----------CceeeecCceeeCC--------CCCeEE-eeCCceEEECCCCEEEEEEEeCCCCC-cc-----------
Q 012300 130 -----------DSFYYYPGRIWLDT--------EGAPIQ-AHGGGILYDERSRTYFWYGEYKDGPT-YH----------- 177 (466)
Q Consensus 130 -----------~~~~i~pg~~w~dt--------~GnpI~-ahd~~Ii~~~~~g~YYlygT~~~~~~-~~----------- 177 (466)
....+.+-..+..+ .++.+. -+||.+++++++|++||+-+...+.. ..
T Consensus 112 ~~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~~G~~ymvfeant~~~~g~~~~~~~~~~~~ 191 (349)
T cd08997 112 LSVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPETGKTYLLFEGNTAGERGSQECTEAELGRV 191 (349)
T ss_pred CcceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEecCCCCcEEEEEEeccCCCCCcccccccccccc
Confidence 11112222222221 112222 37999999887788888776543211 00
Q ss_pred ----cccc-ccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCC-
Q 012300 178 ----AHKK-AAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNY- 251 (466)
Q Consensus 178 ----~~~~-g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~- 251 (466)
.... .....+..|+.++.|+||.+|+..+..+..... ...+++|+++. .+|+|||+++.....+
T Consensus 192 ~~~~~~~~~a~~~~G~IGia~~~s~dl~~W~~~~PL~~a~~v--------~d~~E~P~v~~--~~gk~yL~~s~~~~~~~ 261 (349)
T cd08997 192 LPDTVKPDGASYQNGNVGIAVAKNDDLTEWKLLPPLLEANGV--------NDELERPHVVF--HNGKYYLFTISHRSTFA 261 (349)
T ss_pred ccccccccccccccceEEEEEecCCCCCCcEEcCccccCCCc--------CCceEcceEEE--ECCEEEEEEeCCcCccc
Confidence 0000 011123345666688899999999877654321 34589999996 8999999998553321
Q ss_pred ----CcceEEEEEeCCCCCCceecc
Q 012300 252 ----TKAAVGVAISDYPTGPFDYLY 272 (466)
Q Consensus 252 ----~~~~IGVA~SdsP~GPf~~~~ 272 (466)
..-.+..++|+++.|||+...
T Consensus 262 ~~~~~~~~~~g~vsdsl~GP~~~~n 286 (349)
T cd08997 262 PGLSGPDGLYGFVSDSLRGPYKPLN 286 (349)
T ss_pred cccCCCCcEEEEEeCCCCCCCccCC
Confidence 122466679999999999853
No 63
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=98.85 E-value=2.8e-08 Score=100.68 Aligned_cols=223 Identities=17% Similarity=0.236 Sum_probs=123.0
Q ss_pred hhheeeeeecCCCCcceeEEEecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCC
Q 012300 37 LHFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPD 116 (466)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~ 116 (466)
.|||.+.+-..... ...+ --|..|+||+|||+.+.||+|- ...+.. ..++-- .+.+++ .+..+|| +
T Consensus 22 yHlFyQ~~P~~~~~--g~~~-WgHa~S~Dlv~W~~~~~aL~P~------~~~d~~-g~~SGs--~~~~~~-~~~~~YT-g 87 (308)
T PF00251_consen 22 YHLFYQYNPFGPEW--GNMH-WGHATSKDLVHWEHLPVALPPD------EEYDAD-GCFSGS--AVVDDD-NLVLFYT-G 87 (308)
T ss_dssp EEEEEEEETTSSSS---SBE-EEEEEESSSSSEEEEEEEE-SS------SGGGTT-EEEEEE--EEEETT-CEEEEEE-E
T ss_pred EEEEeccCCCCccc--ceeE-EEEEECCCCCCceeCCceEccc------ccCCcC-ccCcce--EEEECC-EEEEEEe-c
Confidence 35555544433322 1222 2479999999999999999875 222322 233332 222223 4545555 1
Q ss_pred CCccCCCCCccCCCceeeecCceeeCCC-CCeEEe----------eCCceEEECCCCEEEEEEEeCCCCCccccccccce
Q 012300 117 MKTAIDPMKDNGNDSFYYYPGRIWLDTE-GAPIQA----------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAAR 185 (466)
Q Consensus 117 ~~t~~dp~~~~~~~~~~i~pg~~w~dt~-GnpI~a----------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~ 185 (466)
. ..+. ..+-.-+.....+..|.... +|||+. +||.|++.++ ++|||+-.....
T Consensus 88 ~--~~~~-~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~~-~~~~m~~g~~~~------------ 151 (308)
T PF00251_consen 88 N--NRDG-KQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWRED-GRWYMLLGAGRD------------ 151 (308)
T ss_dssp E--ETTT-EEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEECT-TEEEEEEEEEET------------
T ss_pred c--CCCC-CeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEecC-CEEEEEEecccc------------
Confidence 1 1111 11111122223566677655 577764 5889977764 899998653221
Q ss_pred eccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCC------EEEEEEEEeCCCCCcceEEEE
Q 012300 186 VDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTG------KYVMWMHIDDCNYTKAAVGVA 259 (466)
Q Consensus 186 ~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~G------kYyly~s~~~~~~~~~~IGVA 259 (466)
....+.+|+|+||.+|+..+........ .+...+.|+++.-...+ +++|.++...........+++
T Consensus 152 -~~g~i~~y~S~Dl~~W~~~~~l~~~~~~-------~g~~~ECPdlf~l~~~~~~~~~~~~vl~~s~~g~~~~~~~~~Y~ 223 (308)
T PF00251_consen 152 -GRGCILLYTSDDLIHWEYLGPLFIPGDN-------GGGMWECPDLFPLDGKGDGTGKWVWVLIFSPQGIEDNGHGTYYM 223 (308)
T ss_dssp -TEEEEEEEEESSSSSEEEEEEESEEETT-------TSSEEEEEEEEEEEBTTSSSEEEEEEEEEEEESTTTTTTEEEEE
T ss_pred -CcceEEEEEcCCcccCceeCcccccccc-------cccccccceEEEECCcccccceEEEEEEecccccccccccceEE
Confidence 1235889999999999999987664331 25677899999732221 257777764332123445555
Q ss_pred EeCC--CCCCceec-cc--cCCCCCCccCceEEEcCCC-cEEEE
Q 012300 260 ISDY--PTGPFDYL-YS--KRPHGFDSRDMTIFKDDDG-VAYLV 297 (466)
Q Consensus 260 ~Sds--P~GPf~~~-~~--~~p~g~~~iDp~vF~DdDG-~~YL~ 297 (466)
+.+- ..+.|+.. .. ....|....=+..|.|++| +.+|+
T Consensus 224 vG~~d~~~~~f~~~~~~~~~lD~G~dfYA~qtf~~~~~~r~i~~ 267 (308)
T PF00251_consen 224 VGDFDFDGGTFTPDDSSFQRLDYGFDFYAPQTFYDPDGGRRILI 267 (308)
T ss_dssp EEEEETTTTEEEESSTTSEESBSSSS-EEEEEEEETTTTEEEEE
T ss_pred eEEecCCCCeeeeeccccceeccCccccCCchhcCCCcCcEEEE
Confidence 5543 56778754 11 1123444455667888766 55443
No 64
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=98.85 E-value=1.3e-07 Score=100.76 Aligned_cols=176 Identities=19% Similarity=0.267 Sum_probs=120.0
Q ss_pred CCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 012300 152 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 231 (466)
Q Consensus 152 d~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~v 231 (466)
+.++++. +|+|++|-.+..-. .. .+...+..+.|+||++|+..+.||.+++. .+.+.++..++
T Consensus 44 PNG~iy~--~G~yHlFYQ~~P~~---~~------~g~~~WgHa~S~Dlv~W~~~piaL~Pd~~------~d~~g~ySGSA 106 (486)
T COG1621 44 PNGLIYF--DGKYHLFYQYNPFG---AA------HGPKHWGHAVSKDLVHWEHLPIALAPDDD------YDSHGCYSGSA 106 (486)
T ss_pred CCceeEE--CCEEEEEEecCCCC---CC------CCCceeeeeccCCcccceECCceecCCCc------cccCCceeeeE
Confidence 3455665 48999998875411 11 23456789999999999999999887653 24577899999
Q ss_pred EEEccCCEEEEEEEEe--CCCC-CcceEEEEEeCCCCCCceec-cc---cCCCC--CCccCceEEEcCCCcEEEEEEecC
Q 012300 232 IYNDRTGKYVMWMHID--DCNY-TKAAVGVAISDYPTGPFDYL-YS---KRPHG--FDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 232 iyn~~~GkYyly~s~~--~~~~-~~~~IGVA~SdsP~GPf~~~-~~---~~p~g--~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
+- .+|+=.++|+.. +.+. ......+|.|++ .|.|+.. +. ..|.+ ...+||-||.+++|+.||+-++..
T Consensus 107 V~--~~~~l~lfytg~v~~~~~~r~~~Q~iA~s~d-g~~f~K~~~~~i~~~p~~~t~hFRDPKv~w~~~~~~~~mlgAq~ 183 (486)
T COG1621 107 VV--DDGNLSLFYTGNVRDSNGIRQQTQCIAYSED-GGTFEKYSGNPIIDQPEGYTPHFRDPKVVWDEGGKWWMMLGAQG 183 (486)
T ss_pred EE--eCCcEEEEEccceeccCCcceeEEEEEEEcC-CCceEeccCCceecCCCcccccCCCCcccccCCCcEEEEEEEec
Confidence 96 556655556543 2222 234678999998 7778873 22 13444 478999999999999999999854
Q ss_pred C---CcEEEEEcCCCCCCcc--ccEEEe--ecCceeeeeEEEEECCEEEEEEe
Q 012300 303 N---SELHIGPLTSDYLDVS--NVVRRI--LVGQHREAPALFKHLGTYYMVTS 348 (466)
Q Consensus 303 n---~~i~i~~Ls~D~~~~~--g~~~~i--~~g~~~EgP~ifK~~G~YYL~yS 348 (466)
. |.+.+.+ ++|+.++. |+...- ..+...|+|-+|.-++.=.++++
T Consensus 184 ~~~~g~i~lY~-S~DL~~W~~~g~~~~~~~~~gym~ECPdlf~l~~~~~~~~~ 235 (486)
T COG1621 184 EDLKGTILLYE-SDDLKNWQFTGEFGLEQGGLGYMWECPDLFELDGEDVLLFW 235 (486)
T ss_pred CCCCceEEEEe-CCCccCcEEEEeeccCCCceeeEEECCCeEEecCcCceEEc
Confidence 3 2455555 66777664 332111 12346999999999887666654
No 65
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=98.82 E-value=1.5e-07 Score=100.13 Aligned_cols=208 Identities=16% Similarity=0.166 Sum_probs=113.1
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceee-ec
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY-YP 136 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i-~p 136 (466)
--|..|+||+|||+.+.+|+|- ..+ . .+..+++-+-.- +-.+.+.|| ++....+ ........+.. ..
T Consensus 57 Wgha~S~Dlv~W~~~~~al~P~-----~~~-d-~~G~~sGsav~~---~g~~~l~YT-g~~~~~~-~~~~~~q~lA~S~D 124 (445)
T TIGR01322 57 WGHYTSKDLVHWEDEGVALAPD-----DPY-D-SHGCYSGSAVDN---NGQLTLMYT-GNVRDSD-WNRESYQCLATMDD 124 (445)
T ss_pred EEEEECCCccccEECCccCcCC-----Ccc-c-CCceEECeEEee---CCEEEEEEe-ccccCCC-CCeeEEEEEEEcCC
Confidence 3588999999999999999764 122 2 224566644322 445545555 2211000 00000000111 14
Q ss_pred CceeeCCCCCeEEe----------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEec
Q 012300 137 GRIWLDTEGAPIQA----------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEG 206 (466)
Q Consensus 137 g~~w~dt~GnpI~a----------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g 206 (466)
+..|... ++||+. .||.|.+. +|+|||+-...... ....+.+|+|+||++|+..+
T Consensus 125 g~~~~k~-~~pvi~~~~~~~~~~fRDP~V~~~--~g~~~M~~g~~~~~------------~~g~i~ly~S~Dl~~W~~~g 189 (445)
T TIGR01322 125 DGHFEKF-GIVVIELPPAGYTAHFRDPKVWKH--NGHWYMVIGAQTET------------EKGSILLYRSKDLKNWTFVG 189 (445)
T ss_pred CCeEEEC-CCceEeCCCCCCcCcCCCCcEEeE--CCEEEEEEEEecCC------------CceEEEEEECCCcccCeEec
Confidence 4556442 446653 48888765 48999864322100 01246799999999999999
Q ss_pred eeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC-----C-CcceEEEEEe--CCCCCCceecccc--CC
Q 012300 207 IVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN-----Y-TKAAVGVAIS--DYPTGPFDYLYSK--RP 276 (466)
Q Consensus 207 ~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~-----~-~~~~IGVA~S--dsP~GPf~~~~~~--~p 276 (466)
..+........ ..+.+.+.|+++. .+|+++|+|+..... + +....++.+. |-..+.|+..... ..
T Consensus 190 ~~~~~~~~~~~---~~g~~~ECPdlf~--l~~k~vL~~s~~g~~~~~~~~~~~~~~~Y~vG~~d~~~~~f~~~~~~~~lD 264 (445)
T TIGR01322 190 EILGDGQNGLD---DRGYMWECPDLFS--LDGQDVLLFSPQGLDASGYDYQNIYQNGYIVGQLDYEAPEFTHGTEFHELD 264 (445)
T ss_pred ccccccccccC---CccceEECCeEEE--ECCcEEEEEeccccCcccccccccccceeEEEEEECCCCEEecCCCCceec
Confidence 76543211100 0133566999996 789999999865321 1 1112344554 3223456532111 12
Q ss_pred CCCCccCceEEEcCCCcEEEE
Q 012300 277 HGFDSRDMTIFKDDDGVAYLV 297 (466)
Q Consensus 277 ~g~~~iDp~vF~DdDG~~YL~ 297 (466)
.|....=|..|.|+||+.+|+
T Consensus 265 ~G~dfYA~qtf~~~~gr~i~~ 285 (445)
T TIGR01322 265 YGFDFYAPQTFLAPDGRRILV 285 (445)
T ss_pred cCcCceeeeeEECCCCCEEEE
Confidence 344455567788878886554
No 66
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=98.80 E-value=9.1e-07 Score=85.30 Aligned_cols=195 Identities=18% Similarity=0.235 Sum_probs=123.4
Q ss_pred eCCceEEECCCCEEEEEEEeCC-CCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeec
Q 012300 151 HGGGILYDERSRTYFWYGEYKD-GPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 229 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~-~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP 229 (466)
-|+.|++- +|+|.+|+|..+ +..| +--.|.+ ..+|.+.+.+-... -....=||
T Consensus 26 KD~T~V~y--nGk~~VyAtt~d~~~~y-------------~sm~f~~--Ftdws~~~sA~q~~---------m~~~~vAP 79 (271)
T PF03664_consen 26 KDFTIVPY--NGKHHVYATTADTGGGY-------------GSMNFGP--FTDWSQMASASQNY---------MDQSAVAP 79 (271)
T ss_pred cCceEEeE--CCEEEEEEEeccCCCcc-------------ceEeeec--cCCHHHhhcccccc---------CCcccccc
Confidence 46777765 599999999753 2221 1112443 56788776552211 12235799
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCC--ceecccc-----CCCCCCccCceEEEcCCCcEEEEEEecC
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGP--FDYLYSK-----RPHGFDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GP--f~~~~~~-----~p~g~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
.|+|-+-.+.|||.|... .....+.++++|+.| |+....+ ...+.+.||+.|+-| |-..||++.+.
T Consensus 80 ~vFYFaPk~~W~L~yQwg-----~~~fsY~Ts~DptnpngWSapq~lf~g~i~~~~~g~iD~~vI~D-~~n~yLFfa~D- 152 (271)
T PF03664_consen 80 QVFYFAPKNIWYLAYQWG-----PAAFSYSTSSDPTNPNGWSAPQPLFSGSISGSGTGPIDQWVICD-DTNMYLFFAGD- 152 (271)
T ss_pred eEEEecCCcEEEEEEecC-----CCcceeecCCCCCCCccCCCCcccccccccCCCCCceeeEEEec-CCceEEEEcCC-
Confidence 999977788999998743 234567889998876 6543222 112345799999975 55799999865
Q ss_pred CCcEEEEEcCC-CCCCccc-cEEEee---cCceeeeeEEEEEC--CEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeCC-
Q 012300 303 NSELHIGPLTS-DYLDVSN-VVRRIL---VGQHREAPALFKHL--GTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMG- 374 (466)
Q Consensus 303 n~~i~i~~Ls~-D~~~~~g-~~~~i~---~g~~~EgP~ifK~~--G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~g- 374 (466)
||.|+-.++.- +.-.--| ....++ ....+||+.|+|.+ ++|.|+..+-. -...|-.-++|.++.|||+.+.
T Consensus 153 nGkiYRs~~~i~nFP~~fgs~~~vvmsd~~~nLFEA~~VYkv~G~~~YLmiVEaiG-s~gRyFRSfTa~sL~G~Wtp~A~ 231 (271)
T PF03664_consen 153 NGKIYRSSMPIGNFPGGFGSSYTVVMSDTRNNLFEAVQVYKVKGQNQYLMIVEAIG-SDGRYFRSFTATSLDGPWTPQAA 231 (271)
T ss_pred CCcEEEeccchhhCCCCCCCceEEEEecCccceeeeeEEEEEcCCceEEEEEEEec-CCCcEEEeeecCCCCCcceeccc
Confidence 67888776643 2211123 233333 24689999999984 57888876422 1123433457999999999873
Q ss_pred ---Ccccc
Q 012300 375 ---NPCIG 379 (466)
Q Consensus 375 ---nPi~~ 379 (466)
||.-+
T Consensus 232 tEsnPFAg 239 (271)
T PF03664_consen 232 TESNPFAG 239 (271)
T ss_pred cccCCccc
Confidence 56554
No 67
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=98.79 E-value=1.7e-07 Score=99.59 Aligned_cols=203 Identities=15% Similarity=0.097 Sum_probs=117.0
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCC-CccCCC---cee
Q 012300 58 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPM-KDNGND---SFY 133 (466)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~-~~~~~~---~~~ 133 (466)
.-|..|+||+||++.+.||.|- .+.... ..|++-+-.- +..+.++|+ +.. +..+ ...... ..+
T Consensus 40 Wgha~S~Dlv~W~~~~~aL~P~------~~~d~~-g~~sGsav~~---~~~~~~~YT-g~~--~~~~~~~~~~~~~~~~a 106 (437)
T smart00640 40 WGHAVSKDLVHWTHLPVALAPD------EWYDSN-GVFSGSAVID---PGNLSLLYT-GNV--AIDTNVQVQRQAQQLAA 106 (437)
T ss_pred EEEEEcCCcceeeecCcccCCC------CcCCCC-cEEEEEEEEC---CCceEEEEc-CCc--ccccccCcccEEEEEEE
Confidence 5689999999999999999664 123323 3677643322 222545555 211 1211 111111 111
Q ss_pred -eecCceeeCCCCCeEEe----------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCC
Q 012300 134 -YYPGRIWLDTEGAPIQA----------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTW 202 (466)
Q Consensus 134 -i~pg~~w~dt~GnpI~a----------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W 202 (466)
-..+..|....+|||+. +||.|.+.++ ++|||+-...... ....+.+|+|+||.+|
T Consensus 107 ss~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~-~~~~m~~g~~~~~------------~~G~i~ly~S~Dl~~W 173 (437)
T smart00640 107 SDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDG-DKWYMVIGASDED------------KTGIALLYRSTDLKNW 173 (437)
T ss_pred ECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECC-CEEEEEEEEEecC------------CCeEEEEEECCCcccC
Confidence 13577787766788874 4688887653 6999976532100 0123889999999999
Q ss_pred EEeceeccCCCcccccccCCCCeeeeceEEEEccCC-----EEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc---
Q 012300 203 KNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTG-----KYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK--- 274 (466)
Q Consensus 203 ~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~G-----kYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~--- 274 (466)
+..+.++..... ..+.+.+.|+++. .++ ++||.++..........+|....+ ..|+.....
T Consensus 174 ~~~~~~~~~~~~------~~g~~wECPdlf~--l~~~~~~~~~vLi~s~~g~~~~~y~~G~~~g~---~~f~~~~~~~~~ 242 (437)
T smart00640 174 TLLGELLHSGVG------DTGGMWECPDLFP--LPGDGDTSKHVLKVSPQGGSGNYYFVGYFDGS---DQFTPDDPEDVG 242 (437)
T ss_pred eECCcccccCCC------CccceEECCcEEE--eCCCCCceeEEEEECcCCCCccEEEEEEEcCc---eeEeECCccccC
Confidence 999977543211 0135678999996 667 999999876422223445544321 245542211
Q ss_pred ----CCCCCCccCceEEEcCCC-cEEEE
Q 012300 275 ----RPHGFDSRDMTIFKDDDG-VAYLV 297 (466)
Q Consensus 275 ----~p~g~~~iDp~vF~DdDG-~~YL~ 297 (466)
...|....=|..|.|++| +.+|+
T Consensus 243 ~~~~lD~G~dfYA~qt~~~~~~~r~i~~ 270 (437)
T smart00640 243 IGLRLDYGFDFYASQTFYDPDGNRRILI 270 (437)
T ss_pred ccceEecCCCceeeeeeecCCCCcEEEE
Confidence 112344455668888655 55443
No 68
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.59 E-value=2.3e-06 Score=84.77 Aligned_cols=138 Identities=19% Similarity=0.289 Sum_probs=85.4
Q ss_pred eceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--cCC--C----CCCccCceEEEcCCCcEEEEEE
Q 012300 228 RPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KRP--H----GFDSRDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 228 AP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~p--~----g~~~iDp~vF~DdDG~~YL~~g 299 (466)
.|.|++ .+|+|||+|.+...+ ....||+|+|++- -.|+.... ..| . .....||.|++. ||++||+|.
T Consensus 2 nP~v~~--~~G~y~l~y~~~~~~-~~~~ig~A~S~Dg-~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~~-~g~y~m~Yt 76 (268)
T cd08993 2 NPAVVY--DNGEFYLLYRAAGND-GVIRLGLARSRDG-LHFEIDPDPPVWPPPEDGFEEGGVEDPRIVKI-DDTYYITYA 76 (268)
T ss_pred cCeEEE--ECCEEEEEEEEECCC-CceEEEEEEECCC-ceEEECCcceEcCCCCCcccccCccCcEEEEE-CCEEEEEEE
Confidence 377886 799999999986543 3578999999883 35775431 112 1 134679999985 779999998
Q ss_pred ecC----CCcEEEEEcCCCCCCccccEEEeecCceeeeeEEE--EECCEEEEEEeCCCCC-CCCcEEE-EEeCCCCCCce
Q 012300 300 SED----NSELHIGPLTSDYLDVSNVVRRILVGQHREAPALF--KHLGTYYMVTSGCTGW-APNEALV-HAAESIMGPWE 371 (466)
Q Consensus 300 ~~~----n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~if--K~~G~YYL~yS~~tg~-~~n~~v~-~~Sds~~GPw~ 371 (466)
+.. ...+.+++ ++|+.+++-... +.... ...+.+| |.+|+|||+|....+. ...+.++ +.|+++. -|+
T Consensus 77 a~~~~~~~~~i~lA~-S~D~~~W~~~~~-~~~~~-~~d~~~~p~~~~g~y~m~~r~~~~~~~~~~~I~lA~S~Dl~-~W~ 152 (268)
T cd08993 77 ARPNAPNGTRIGLAT-TKDFITFERLGT-SLVPN-NRDGILFPEKINGKYVMLHRPFEYGGTSPPDMWLSFSPDLV-HWG 152 (268)
T ss_pred ccCCCCCCcEEEEEE-eCCcceEEEecc-cCCCC-CCCEEEeeEEECCEEEEEEccccCCCCCCCcEEEEECCCcC-ccC
Confidence 743 23455665 567766643211 11111 1235666 4699999999643211 1224444 4688776 577
Q ss_pred eCC
Q 012300 372 DMG 374 (466)
Q Consensus 372 ~~g 374 (466)
..+
T Consensus 153 ~~~ 155 (268)
T cd08993 153 NHR 155 (268)
T ss_pred CCe
Confidence 554
No 69
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=9.9e-07 Score=93.96 Aligned_cols=209 Identities=16% Similarity=0.174 Sum_probs=118.6
Q ss_pred CccccchhhhhhccccCCCCCCCCCCccccc----CCCcccceeeeeccCCcceEEeeeCCCCccCCCCCcc-CCCceee
Q 012300 60 NPSFRELVEVEEENIQIPPPRGKRSPRAAKR----RPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDN-GNDSFYY 134 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~-~~~~~~i 134 (466)
...|+||++|+...-.| .+.+..-.++ .|..|||.|..- +-.+-++|+. ++-...- .+...|+
T Consensus 57 i~hS~DL~nW~~v~tpl----~~~~~ld~kgn~~~S~giWAPdl~y~---dGkfwl~ytd-----vk~~~g~~k~~~nyl 124 (549)
T COG3507 57 IHHSRDLVNWTLVSTPL----IRTSQLDLKGNFPYSGGIWAPDLSYH---DGKFWLYYTD-----VKRSGGPYKNAGNYL 124 (549)
T ss_pred eeccccccCcEEecccc----cCcchhhhhcccCCCCceeccceecC---CCcEEEEEec-----ccccCCcccccccEE
Confidence 35689999999887533 2333433332 467999998854 7788666641 2222211 1212344
Q ss_pred e----cCceeeCCCCCeE-EeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCC--CCCEEece
Q 012300 135 Y----PGRIWLDTEGAPI-QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDM--WTWKNEGI 207 (466)
Q Consensus 135 ~----pg~~w~dt~GnpI-~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DL--v~W~~~g~ 207 (466)
+ +...|.|..--+. .++||++.+|+++.+|.+++.+..+.. ++ .++...+.+++.+-. ..+. .+.
T Consensus 125 ~t~~s~~G~WsDpi~l~~~~~iDPslf~D~dGr~wlv~~~w~~~~~--~~-----~~~~i~l~~~~~~~~~l~g~~-~~~ 196 (549)
T COG3507 125 VTAESIDGPWSDPIKLNGSNAIDPSLFFDKDGRKWLVNGSWDGGIF--MH-----SFAGIILQEYDKTTQKLVGQG-YKI 196 (549)
T ss_pred EEecCCCCCcccceecCCcCccCCceeecCCCCEEEEecccCCCcc--cc-----cccceeeeeccccccccCCcc-cee
Confidence 3 3456766431112 378999999998888888888764321 01 011222333333221 1111 111
Q ss_pred eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccC-------CCC--
Q 012300 208 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-------PHG-- 278 (466)
Q Consensus 208 vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-------p~g-- 278 (466)
++... +....++|.+. +++|-||||.+-.........|.||.|++++|||++..... |..
T Consensus 197 ~~~G~---------~~~~~EGPhl~--k~~gYYYL~~a~gG~t~~gh~~~vaRSKsidGPYe~~~~~pllt~~~~p~~~~ 265 (549)
T COG3507 197 IFDGG---------NGGLTEGPHLY--KKTGYYYLYVAEGGLTTYGHAIRVARSKSIDGPYEDHPGNPLLTSRDNPENPL 265 (549)
T ss_pred EeccC---------CCccccCceee--ccCCEEEEEEEcCCCCccceeEEEEeccCCCCCcccCCCCeeeeecCCCCChh
Confidence 22211 23468999555 58888898877543133457899999999999999764321 111
Q ss_pred CCccCceEEEcCCCcEEEEEE
Q 012300 279 FDSRDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 279 ~~~iDp~vF~DdDG~~YL~~g 299 (466)
..+-...+++..+|++|+.+.
T Consensus 266 q~~gh~~~v~t~~g~w~~~~~ 286 (549)
T COG3507 266 QKAGHGTLVVTPTGEWYFAYL 286 (549)
T ss_pred hhcCCcceEECCCCcEeeeee
Confidence 112234455567788888887
No 70
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=98.51 E-value=1.4e-05 Score=81.41 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=105.8
Q ss_pred cEEEEEeCCCCCCEEece-eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCc
Q 012300 190 GVGCYSSKDMWTWKNEGI-VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPF 268 (466)
Q Consensus 190 gi~v~sS~DLv~W~~~g~-vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf 268 (466)
.|.+..|+|.++|+.... +|.+... + ...+++-|-|++ .+|+|||+|++.+.. ..++++|+|++-. -|
T Consensus 61 ~iglA~S~DGi~f~~~~~pil~P~~~-~-----e~~GvEDPRVt~--i~d~yymtYta~~~~--~~~~~la~s~D~~-~~ 129 (312)
T PF04041_consen 61 RIGLARSDDGIHFERDPEPILYPDTD-Y-----EEWGVEDPRVTK--IDDTYYMTYTAYSGK--GPRIGLATSKDFK-HW 129 (312)
T ss_dssp EEEEEEESSSSS-EE-SS-SBEE-SS-T-----THTEEEEEEEEE--ETTEEEEEEEEEESS--SEEEEEEEESSSS-SE
T ss_pred EEEEEEccCCcCceECCCCEEccCCC-C-----cccCccceeEEE--ECCEEEEEEEEecCC--CcccceEEccchH-hh
Confidence 588999999999998754 4433322 1 235689999997 789999999987543 5789999999853 47
Q ss_pred eeccccCCC-C-------CCccCceEEEcC-CCcEEEEEEecCCCcEEEEEcCCCCCCccccEEEeec-------Cceee
Q 012300 269 DYLYSKRPH-G-------FDSRDMTIFKDD-DGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILV-------GQHRE 332 (466)
Q Consensus 269 ~~~~~~~p~-g-------~~~iDp~vF~Dd-DG~~YL~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i~~-------g~~~E 332 (466)
+..+...+. . ...-|..+|-.. +|+++|++. ...|+++. ++|++.+......+.. ...++
T Consensus 130 ~r~g~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r---~~~i~la~-S~Dl~~W~~~~~~~~~~~~~~~d~~kiG 205 (312)
T PF04041_consen 130 ERHGKIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHR---DPSIWLAY-SPDLIHWGNHREPLLSPRPGWWDSSKIG 205 (312)
T ss_dssp EEEECTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEE---SSSBEEEE-ESSSSSEEEEBETSB--STTSSCSSEEE
T ss_pred EEeccccCcccccccccccccCceEEEEEEECCEEEEEEC---CCCEEEEe-cCCcccccccccccccCCCCcChhhccc
Confidence 665432211 1 134788888763 899999887 46788887 5888877543221221 12333
Q ss_pred -eeEEEEECCEEEEEEeC-CCCCCCCcEEEEEeCCCCCCceeC---CCccccC
Q 012300 333 -APALFKHLGTYYMVTSG-CTGWAPNEALVHAAESIMGPWEDM---GNPCIGG 380 (466)
Q Consensus 333 -gP~ifK~~G~YYL~yS~-~tg~~~n~~v~~~Sds~~GPw~~~---gnPi~~~ 380 (466)
||--+|.+.-|.++|-+ .+.....|.+++.-=+...|.+-. ..|++..
T Consensus 206 ~g~pPi~t~~GwL~iyHG~~~~~~~~Y~~g~~LlD~~dP~kvi~r~~~pil~P 258 (312)
T PF04041_consen 206 AGPPPIKTDEGWLLIYHGNVTDEGRVYRLGAALLDLDDPTKVIARSPEPILEP 258 (312)
T ss_dssp E-S-EEEETTEEEEEEEEEESSTTTEEEEEEEEE-SSSTTSEEEEBSS-SB-S
T ss_pred CCCCceEecCCEEEEEeccccCCCCEEEEEEEEEcCCCCcceEECCCCceEcC
Confidence 46666765447777764 223333466655433334444322 4565553
No 71
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=97.89 E-value=0.00069 Score=67.90 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=90.2
Q ss_pred hhhhhhccccCCC-CCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCC---CccCCCCCccCC--CceeeecCce
Q 012300 66 LVEVEEENIQIPP-PRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDM---KTAIDPMKDNGN--DSFYYYPGRI 139 (466)
Q Consensus 66 l~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~---~t~~dp~~~~~~--~~~~i~pg~~ 139 (466)
|++|++.+.|+.- ++ +... ...+|||.|-.|.- +....+.|.-++ -|..||+.- ++ ...-++.|..
T Consensus 55 f~~Ws~~g~A~q~~l~----~~~~--~~~fwAPqVfyf~p-k~kwYL~Yq~~~~~yaTs~dp~~P-~~ws~~qpl~~~~~ 126 (303)
T cd08987 55 FTDWSQAASATQYYLQ----NGNM--TGYRVAPQVFYFAP-QNKWYLIYQWWPAAYSTNSDISNP-NGWSAPQPLFSGTP 126 (303)
T ss_pred ccCHhHhccchhhccc----CCCC--CcccccCEEeeecc-CCEEEEEEecCceEEEeCCCCCCC-CccCCCcccccCcc
Confidence 9999999977741 11 1112 23599999998843 334546666211 012233321 11 1111211111
Q ss_pred eeCCCCCeEEeeCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEe-CCCCCCEEe---c-eeccCCCc
Q 012300 140 WLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSS-KDMWTWKNE---G-IVLAAEET 214 (466)
Q Consensus 140 w~dt~GnpI~ahd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS-~DLv~W~~~---g-~vL~~~~~ 214 (466)
.+....+| |..||- ++++.|||-..+++ .||.| ..+.|.... . .++.. +.
T Consensus 127 -~~~~~~~I---D~~vI~--Dd~~~YLff~~dnG------------------~iyra~~~~~nFp~~~~~~~~~~~~-~~ 181 (303)
T cd08987 127 -NGSPGGWI---DFWVIC--DDTNCYLFFSDDNG------------------KLYRSSTTLGNFPNGGTETVIIMSD-SN 181 (303)
T ss_pred -cCCCCCcc---ceeEEe--CCCCEEEEEecCCC------------------eEEEEecchhhCCCCCCccEEEecC-CC
Confidence 01111223 556653 46999999875442 24443 344333221 1 22221 11
Q ss_pred ccccccCCCCeeeeceEEEEccCC--EEEEEEEEeCCCCCcceEEEEEeCCCCCCceec
Q 012300 215 NETHDLYKLNVLERPKVIYNDRTG--KYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYL 271 (466)
Q Consensus 215 ~~~~~~~~~~~iWAP~viyn~~~G--kYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~ 271 (466)
..+.++||.|.. .+| +|+|.+.+...+..+...+ ++|+++.|||+..
T Consensus 182 -------~~~lfEa~~Vyk--v~G~~~YlmiveA~g~~~~rYfrs-~Ts~Sl~GpWt~~ 230 (303)
T cd08987 182 -------KNNLFEASNVYK--VKGQNQYLLIVEAIGSDGGRYFRS-WTATSLDGPWTPL 230 (303)
T ss_pred -------ccccceeeEEEE--ECCCeEEEEEEEecCCCCCCeEEE-EEcCCCCCCceec
Confidence 247799999996 666 9999999886643455566 9999999999976
No 72
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.00065 Score=72.80 Aligned_cols=204 Identities=17% Similarity=0.200 Sum_probs=108.4
Q ss_pred CccccchhhhhhccccCCCCCCCCCCcccccCCCcccceeeeeccCCcceEEeeeCCCCccCCCCCccCCCceeee---c
Q 012300 60 NPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY---P 136 (466)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~---p 136 (466)
|..|.||+|||.+++||=|- .+.++.| .+.= .... .+.....+|+ |+.. ...........|. .
T Consensus 74 Ha~S~Dlv~W~~~piaL~Pd------~~~d~~g-~ySG--SAV~-~~~~l~lfyt---g~v~-~~~~~r~~~Q~iA~s~d 139 (486)
T COG1621 74 HAVSKDLVHWEHLPIALAPD------DDYDSHG-CYSG--SAVV-DDGNLSLFYT---GNVR-DSNGIRQQTQCIAYSED 139 (486)
T ss_pred eeccCCcccceECCceecCC------CccccCC-ceee--eEEE-eCCcEEEEEc---ccee-ccCCcceeEEEEEEEcC
Confidence 78999999999999999664 4444221 1111 1111 1334445666 2222 2221122112221 2
Q ss_pred CceeeCCCCCeEEe---------eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEece
Q 012300 137 GRIWLDTEGAPIQA---------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI 207 (466)
Q Consensus 137 g~~w~dt~GnpI~a---------hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~ 207 (466)
|..+.--.||||.. +||.+++++ +|++||+---... . ....|.+|+|.||.+|+..|.
T Consensus 140 g~~f~K~~~~~i~~~p~~~t~hFRDPKv~w~~-~~~~~~mlgAq~~-~-----------~~g~i~lY~S~DL~~W~~~g~ 206 (486)
T COG1621 140 GGTFEKYSGNPIIDQPEGYTPHFRDPKVVWDE-GGKWWMMLGAQGE-D-----------LKGTILLYESDDLKNWQFTGE 206 (486)
T ss_pred CCceEeccCCceecCCCcccccCCCCcccccC-CCcEEEEEEEecC-C-----------CCceEEEEeCCCccCcEEEEe
Confidence 22222213566653 488877765 4666665322110 0 112488999999999999998
Q ss_pred eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEE-----EEeCCCC-CcceEEEEEeC-CCCCCceeccc-c--CCC
Q 012300 208 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWM-----HIDDCNY-TKAAVGVAISD-YPTGPFDYLYS-K--RPH 277 (466)
Q Consensus 208 vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~-----s~~~~~~-~~~~IGVA~Sd-sP~GPf~~~~~-~--~p~ 277 (466)
....... .+.+.+.|+++. -.++=++++ ......+ +....++.+.+ ++ ..|+.... . ...
T Consensus 207 ~~~~~~~-------~gym~ECPdlf~--l~~~~~~~~~pqg~~~~~~~~~n~~~~~Y~vG~~dg-~~f~~~~~~~~~LD~ 276 (486)
T COG1621 207 FGLEQGG-------LGYMWECPDLFE--LDGEDVLLFWPQGLSINGGEYDNIYQSGYFVGDFDG-KEFKLDDGQFRELDF 276 (486)
T ss_pred eccCCCc-------eeeEEECCCeEE--ecCcCceEEcceeeecCCCcCCCcceeEEEEEeecc-ceeEecCCCceeccc
Confidence 7654211 234688999996 555433333 2222222 23446666665 32 22333221 1 234
Q ss_pred CCCccCceEEEcCCCcEEEE-EEe
Q 012300 278 GFDSRDMTIFKDDDGVAYLV-YSS 300 (466)
Q Consensus 278 g~~~iDp~vF~DdDG~~YL~-~g~ 300 (466)
|+...=|..|.|+||+.+++ |.+
T Consensus 277 G~DfYApQtf~~~dgrri~igWmg 300 (486)
T COG1621 277 GFDFYAPQTFLDPDGRRILIGWMG 300 (486)
T ss_pred CccccceeeccCCCCCEEEEEecc
Confidence 67777788898888885444 544
No 73
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.00024 Score=75.12 Aligned_cols=161 Identities=18% Similarity=0.134 Sum_probs=101.0
Q ss_pred CCEEEEEEEeCC-CCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCE
Q 012300 161 SRTYFWYGEYKD-GPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGK 239 (466)
Q Consensus 161 ~g~YYlygT~~~-~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~Gk 239 (466)
+|.|.||-++.. +..| +...+....|+||+||+....|+.+.+. .+-+.+|..++.-+ .+|+
T Consensus 69 kG~yHLFyQyNP~gavw----------g~ivWGHavSkDLinW~~lp~Ai~Ps~~------~ding~wSGSati~-~~~~ 131 (571)
T KOG0228|consen 69 KGKYHLFYQYNPKGAVW----------GNIVWGHAVSKDLINWEALPPAIAPSEW------FDINGCWSGSATID-PNNS 131 (571)
T ss_pred CcEEEEEEecCCCCcee----------eeeEeeeecchhhccccccCcccCCCCc------cccCccccceEEEc-cCCC
Confidence 489999988754 2221 2245677889999999999998876542 24567899999985 5677
Q ss_pred EEEEEEEeCCCCCcceEEEEEeCCCCC------------Cceecccc-CCCCCCccCceEEEc-CCCcEEEEEEecC-CC
Q 012300 240 YVMWMHIDDCNYTKAAVGVAISDYPTG------------PFDYLYSK-RPHGFDSRDMTIFKD-DDGVAYLVYSSED-NS 304 (466)
Q Consensus 240 Yyly~s~~~~~~~~~~IGVA~SdsP~G------------Pf~~~~~~-~p~g~~~iDp~vF~D-dDG~~YL~~g~~~-n~ 304 (466)
=+++|+..+.+. .+-.-+|.-.++.. ||...... .......+||+++.. +||++-|+-++-. ..
T Consensus 132 ~vilytg~d~~~-rqVqn~a~p~d~sdp~l~~w~k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dgkWrm~vgsk~~q~ 210 (571)
T KOG0228|consen 132 PVILYTGIDPNN-RQVQNYAYPKDVSDPQLIAWSKDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDGKWRMTVGSKIKQR 210 (571)
T ss_pred eEEEecccCcCc-eEEEEEeccCCCCchhhheeecCCCceeeccccccCCChhhccCCceeeecCCCcEEEEEEeecCcc
Confidence 777777554331 22222333333333 33321110 112346899999987 6899999888742 22
Q ss_pred cEEEEEcCCCCCCccccEEEee---cCceeeeeEEEEE
Q 012300 305 ELHIGPLTSDYLDVSNVVRRIL---VGQHREAPALFKH 339 (466)
Q Consensus 305 ~i~i~~Ls~D~~~~~g~~~~i~---~g~~~EgP~ifK~ 339 (466)
.+.+.--+.|+..++.....+. .+.+.|+|-+|.-
T Consensus 211 g~a~~Y~S~Df~~W~k~~~~~h~~~~tgmwECPdffpV 248 (571)
T KOG0228|consen 211 GKAIIYSSDDFKHWTKSSVPLHSGDLTGMWECPDFFPV 248 (571)
T ss_pred ceEEEEeccchhhhhcccccccccCccceEECCCcEEe
Confidence 3333344788888875544332 3468899998863
No 74
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=97.17 E-value=0.0088 Score=61.05 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=99.0
Q ss_pred CCeeeeceEEEEccCCE--EEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--cCCC----CCCccCceEEEcCCCcE
Q 012300 223 LNVLERPKVIYNDRTGK--YVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KRPH----GFDSRDMTIFKDDDGVA 294 (466)
Q Consensus 223 ~~~iWAP~viyn~~~Gk--Yyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~p~----g~~~iDp~vF~DdDG~~ 294 (466)
...+..|.++. .+|+ |+|.|-+........+||+|.|++.. .|+.... ..|. -.+.-||-|++- ||++
T Consensus 29 ~~~vfNpgai~--~~~~~R~~l~yr~~~~~~~~~~iglA~S~DGi-~f~~~~~pil~P~~~~e~~GvEDPRVt~i-~d~y 104 (312)
T PF04041_consen 29 PNAVFNPGAIV--FDGGLRVYLLYRAYGSDIGSSRIGLARSDDGI-HFERDPEPILYPDTDYEEWGVEDPRVTKI-DDTY 104 (312)
T ss_dssp SSEEEEEEEEE--ETTE--EEEEEEEEESSSSEEEEEEEEESSSS-S-EE-SS-SBEE-SSTTHTEEEEEEEEEE-TTEE
T ss_pred cceEEcCcEEE--ECCeeEEEEEEEeECCCCceeEEEEEEccCCc-CceECCCCEEccCCCCcccCccceeEEEE-CCEE
Confidence 35678888885 4555 88877665444334589999999864 4665321 1111 134679999986 4689
Q ss_pred EEEEEecCCC--cEEEEEcCCCCCCccccEEEeecC-c----------eeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE
Q 012300 295 YLVYSSEDNS--ELHIGPLTSDYLDVSNVVRRILVG-Q----------HREAPALFKHLGTYYMVTSGCTGWAPNEALVH 361 (466)
Q Consensus 295 YL~~g~~~n~--~i~i~~Ls~D~~~~~g~~~~i~~g-~----------~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~ 361 (466)
||.|.+.+.. .+.++ .+.|+.+++-.- .++.. . ..-+.+.-|.||+|+|++-. + ..-.+
T Consensus 105 ymtYta~~~~~~~~~la-~s~D~~~~~r~g-~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r~-----~-~i~la 176 (312)
T PF04041_consen 105 YMTYTAYSGKGPRIGLA-TSKDFKHWERHG-KIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHRD-----P-SIWLA 176 (312)
T ss_dssp EEEEEEEESSSEEEEEE-EESSSSSEEEEE-CTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEES-----S-SBEEE
T ss_pred EEEEEEecCCCcccceE-EccchHhhEEec-cccCcccccccccccccCceEEEEEEECCEEEEEECC-----C-CEEEE
Confidence 9999976432 23333 367877764211 11110 0 11122233679999999872 1 12234
Q ss_pred EeCCCCCCceeCCCccccCCcc-ce--eeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEEEEEEEcC
Q 012300 362 AAESIMGPWEDMGNPCIGGNKV-FR--LTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRG 432 (466)
Q Consensus 362 ~Sds~~GPw~~~gnPi~~~~~~-~~--~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~~~~~~R~v~lPl~~~~ 432 (466)
.|++.. .|+....++....+. +. ..+.++ --+..+ ++|+++||- +. .....+|..--+.+|.
T Consensus 177 ~S~Dl~-~W~~~~~~~~~~~~~~~d~~kiG~g~---pPi~t~--~GwL~iyHG--~~-~~~~~~Y~~g~~LlD~ 241 (312)
T PF04041_consen 177 YSPDLI-HWGNHREPLLSPRPGWWDSSKIGAGP---PPIKTD--EGWLLIYHG--NV-TDEGRVYRLGAALLDL 241 (312)
T ss_dssp EESSSS-SEEEEBETSB--STTSSCSSEEEE-S----EEEET--TEEEEEEEE--EE-SSTTTEEEEEEEEE-S
T ss_pred ecCCcc-cccccccccccCCCCcChhhcccCCC---CceEec--CCEEEEEec--cc-cCCCCEEEEEEEEEcC
Confidence 676665 477665444432211 00 112221 223333 268877773 11 1345567554444544
No 75
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=97.08 E-value=0.0033 Score=66.16 Aligned_cols=112 Identities=20% Similarity=0.283 Sum_probs=68.0
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccc----------------------eeccCcEEEEEeCCCCCCEEecee
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAA----------------------RVDIIGVGCYSSKDMWTWKNEGIV 208 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~----------------------~~~~~gi~v~sS~DLv~W~~~g~v 208 (466)
+||.++.++.+|+-||+-+...+......-+|.. ..+..||.....+++..|+.....
T Consensus 211 RDP~~f~DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~~~~w~~~~PL 290 (428)
T PF02435_consen 211 RDPHVFEDPEDGKRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANGAIGIAKLTNDDGTVWELLPPL 290 (428)
T ss_dssp EEEEEEEETTTTEEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EEEEEEEEESTTTTSEEEEEEEE
T ss_pred cCCeeEECCCCCcEEEEEecccCCCCCccccCccccccccccccccccccccccceecceeeeEEecCCCCCccEEeCcc
Confidence 6999999977888888777543321111111110 122334444444556679988877
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC------CCcceEEEEEeCCCCCCceecc
Q 012300 209 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN------YTKAAVGVAISDYPTGPFDYLY 272 (466)
Q Consensus 209 L~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~------~~~~~IGVA~SdsP~GPf~~~~ 272 (466)
|..... ...+++|.|+. ++||||||....... ....-.|..++++..|||+++.
T Consensus 291 ~~a~~v--------~de~ERP~iv~--~~gkyYLFt~s~~~~~a~g~~g~d~~yg~~~~~~L~g~y~PLN 350 (428)
T PF02435_consen 291 LSANGV--------NDELERPHIVF--MNGKYYLFTISHLSTFADGIVGPDGVYGFVVSDSLRGPYKPLN 350 (428)
T ss_dssp EEETTT--------BS-EEEEEEEE--ETTEEEEEEEEEGGGBSTTHHTTSEEEEEEEESSTTS--EEGC
T ss_pred eecccc--------cccccCCcEEE--ECCEEEEEEEeccccccCCccCCCeEEEEEECccccCCceecC
Confidence 765543 46799999996 999999999876321 1223344455555999999874
No 76
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=96.10 E-value=0.044 Score=58.49 Aligned_cols=154 Identities=17% Similarity=0.162 Sum_probs=84.0
Q ss_pred hheeeeeecCCCCcceeEEEecCccccchhhhhhccccCCCCCCCCCCcccccCCCccc----------c-eeeeeccC-
Q 012300 38 HFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTT----------T-LIDEFLDE- 105 (466)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----------~-~v~~f~~~- 105 (466)
|||.-+..+...-++ .+=-|..|.||++||....||=|- +|..-. ..|. | ++.+-.++
T Consensus 73 HLFyQyNP~gavwg~---ivWGHavSkDLinW~~lp~Ai~Ps------~~~din-g~wSGSati~~~~~~vilytg~d~~ 142 (571)
T KOG0228|consen 73 HLFYQYNPKGAVWGN---IVWGHAVSKDLINWEALPPAIAPS------EWFDIN-GCWSGSATIDPNNSPVILYTGIDPN 142 (571)
T ss_pred EEEEecCCCCceeee---eEeeeecchhhccccccCcccCCC------CccccC-ccccceEEEccCCCeEEEecccCcC
Confidence 444444444433322 233489999999999999998664 454422 2221 1 11111122
Q ss_pred CcceEEeeeCCCCccCCCCCccCCCceeeecCceeeCCCCCeEEe------------eCCceEEECCCCEEEEEEEeCCC
Q 012300 106 NSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQA------------HGGGILYDERSRTYFWYGEYKDG 173 (466)
Q Consensus 106 ~~~v~~~~~p~~~t~~dp~~~~~~~~~~i~pg~~w~dt~GnpI~a------------hd~~Ii~~~~~g~YYlygT~~~~ 173 (466)
+-+| ..|+ .+....||-.. .|....|||+.. +||-.....++|+|=|..-.+..
T Consensus 143 ~rqV-qn~a-~p~d~sdp~l~------------~w~k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dgkWrm~vgsk~~ 208 (571)
T KOG0228|consen 143 NRQV-QNYA-YPKDVSDPQLI------------AWSKDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDGKWRMTVGSKIK 208 (571)
T ss_pred ceEE-EEEe-ccCCCCchhhh------------eeecCCCceeeccccccCCChhhccCCceeeecCCCcEEEEEEeecC
Confidence 2222 2333 11123333332 233334555432 57888877777888776544321
Q ss_pred CCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEcc
Q 012300 174 PTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDR 236 (466)
Q Consensus 174 ~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~ 236 (466)
.-..+.+|+|+|+++|+.....+...+ .+.+-+.|+.+.-..
T Consensus 209 -------------q~g~a~~Y~S~Df~~W~k~~~~~h~~~--------~tgmwECPdffpVs~ 250 (571)
T KOG0228|consen 209 -------------QRGKAIIYSSDDFKHWTKSSVPLHSGD--------LTGMWECPDFFPVSI 250 (571)
T ss_pred -------------ccceEEEEeccchhhhhcccccccccC--------ccceEECCCcEEecc
Confidence 112467899999999999887665433 244556777764333
No 77
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.27 Score=49.68 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=104.2
Q ss_pred cCcEEEEEeCCCCC-CEEece--eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCC
Q 012300 188 IIGVGCYSSKDMWT-WKNEGI--VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYP 264 (466)
Q Consensus 188 ~~gi~v~sS~DLv~-W~~~g~--vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP 264 (466)
...+.+..|+|+.+ |+.+.. ..+... ...--+++-|-|.+ .+|+|+|.|++.+. ...++++|++.+-
T Consensus 60 ~s~l~ia~s~dgi~~~~~e~ep~~~P~~~------~~e~~G~EDPRvt~--I~~~y~mtYTa~s~--~g~~~~la~t~~f 129 (314)
T COG2152 60 ISHLRIARSDDGIGEFEIEPEPTLWPANY------PYEIYGIEDPRVTK--IGGRYYMTYTAYSD--KGPRLALAVTKDF 129 (314)
T ss_pred ceEEEEEecccCCCceecCCcceEecCCC------chhhhcccCceEEE--ECCEEEEEEEecCC--CCcccchhhhhhh
Confidence 34688899999999 997653 333121 11234578899997 89999999998643 2577889998886
Q ss_pred CCCceeccccCCCCCCccCceEEEc-CCCcEEEEEEec----C-CCcEEEEEcCCCCCCccccEEEeec---C-----ce
Q 012300 265 TGPFDYLYSKRPHGFDSRDMTIFKD-DDGVAYLVYSSE----D-NSELHIGPLTSDYLDVSNVVRRILV---G-----QH 330 (466)
Q Consensus 265 ~GPf~~~~~~~p~g~~~iDp~vF~D-dDG~~YL~~g~~----~-n~~i~i~~Ls~D~~~~~g~~~~i~~---g-----~~ 330 (466)
.. |+..+...+. ...|..+|-- -+|+++|+-.-- . .++++++- ++|+..+......+.. + ..
T Consensus 130 ~n-~~rig~i~~p--dn~~~~lfP~~~ngk~~~lhr~~~~~~~~~~niwia~-S~dl~~w~~~~~~l~~~~~~~~d~~KI 205 (314)
T COG2152 130 LN-WERIGAIFPP--DNKDAALFPKKINGKYALLHRPVLGEYGMKGNIWIAF-SPDLEHWGIHRKLLGPRMGGWWDELKI 205 (314)
T ss_pred hh-hhhcccccCC--CCCCceEeeEEecCcEEEEEeecccccCccCceEEEE-cCCccCCCccceeeccccCCcchhhhc
Confidence 54 8877654443 4677777754 377877765421 1 34677664 7888776544333321 1 11
Q ss_pred eeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeC---CCccccC
Q 012300 331 REAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM---GNPCIGG 380 (466)
Q Consensus 331 ~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~---gnPi~~~ 380 (466)
-=||.-+|-..-+-++|-+-+....-|.++++==++.+|..-. .++|++.
T Consensus 206 G~g~~Pikt~egwLvlyHgv~~~~~~Yr~GaALlDledp~kvl~rS~~~IleP 258 (314)
T COG2152 206 GWGTPPIKTEEGWLVLYHGVDETLTVYRLGAALLDLEDPTKVLARSPEYILEP 258 (314)
T ss_pred cCCCCCcCcccceEEEEeeccCccceEEeeeEEEcCCCCcEEEecCCccccCc
Confidence 2234445543335555643221111244544433555565432 3455543
No 78
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=95.81 E-value=2 Score=41.96 Aligned_cols=199 Identities=14% Similarity=0.074 Sum_probs=107.2
Q ss_pred eCCceEEECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCC-CCCCEEeceeccCCCcccccccCCCCeeeec
Q 012300 151 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKD-MWTWKNEGIVLAAEETNETHDLYKLNVLERP 229 (466)
Q Consensus 151 hd~~Ii~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~D-Lv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP 229 (466)
.+|.++++. +|+.+++.+..... ..|.+ ..+..+.|+| ..+|+....+....... ....+-.+
T Consensus 49 ~~p~~~~~~-~g~l~l~~~~~~~~---~~~~~------~~~~~~~S~D~G~TWs~~~~l~~~~~~~------~~~~~~~~ 112 (275)
T PF13088_consen 49 GNPSLVVDP-DGRLWLFYSAGSSG---GGWSG------SRIYYSRSTDGGKTWSEPTDLPPGWFGN------FSGPGRGP 112 (275)
T ss_dssp EEEEEEEET-TSEEEEEEEEEETT---ESCCT------CEEEEEEESSTTSS-EEEEEEHHHCCCS------CEECSEEE
T ss_pred cCcEEEEeC-CCCEEEEEEEccCC---CCCCc------eeEEEEEECCCCCCCCCccccccccccc------eeccceee
Confidence 356677765 78888887432110 01111 1222245555 88999987543321110 01111222
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCCCcEEEE
Q 012300 230 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIG 309 (466)
Q Consensus 230 ~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i~i~ 309 (466)
-+.. .+|+.++-+.... .....+.+..|++---.|+..... +......-|+++.+.||+.++++....+..+.++
T Consensus 113 ~i~~--~~G~l~~~~~~~~--~~~~~~~~~~S~D~G~tW~~~~~~-~~~~~~~e~~~~~~~dG~l~~~~R~~~~~~~~~~ 187 (275)
T PF13088_consen 113 PIQL--PDGRLIAPYYHES--GGSFSAFVYYSDDGGKTWSSGSPI-PDGQGECEPSIVELPDGRLLAVFRTEGNDDIYIS 187 (275)
T ss_dssp EEEE--CTTEEEEEEEEES--SCEEEEEEEEESSTTSSEEEEEEC-ECSEEEEEEEEEEETTSEEEEEEEECSSTEEEEE
T ss_pred eeEe--cCCCEEEEEeecc--ccCcceEEEEeCCCCceeeccccc-cccCCcceeEEEECCCCcEEEEEEccCCCcEEEE
Confidence 2443 5888776533221 134677888888854457764321 1223567888888899999999886422456666
Q ss_pred EcCCCCCCccccEEEeecCceeeeeEEEE-ECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeC
Q 012300 310 PLTSDYLDVSNVVRRILVGQHREAPALFK-HLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM 373 (466)
Q Consensus 310 ~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK-~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~ 373 (466)
.-.+...++.. +..+.......++.+++ .+|..+|++....+ ......+.|.+=---|+..
T Consensus 188 ~S~D~G~TWs~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--r~~l~l~~S~D~g~tW~~~ 249 (275)
T PF13088_consen 188 RSTDGGRTWSP-PQPTNLPNPNSSISLVRLSDGRLLLVYNNPDG--RSNLSLYVSEDGGKTWSRP 249 (275)
T ss_dssp EESSTTSS-EE-EEEEECSSCCEEEEEEECTTSEEEEEEECSST--SEEEEEEEECTTCEEEEEE
T ss_pred EECCCCCcCCC-ceecccCcccCCceEEEcCCCCEEEEEECCCC--CCceEEEEEeCCCCcCCcc
Confidence 65566776654 33333334456666676 47899999983222 2222233555443346643
No 79
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=94.84 E-value=0.9 Score=45.99 Aligned_cols=135 Identities=17% Similarity=0.095 Sum_probs=78.9
Q ss_pred CCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCE
Q 012300 160 RSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGK 239 (466)
Q Consensus 160 ~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~Gk 239 (466)
-+|+|+|+.--..+ .. + ....+-+..|.||.+|..+...|.....+|. .....=|+|--+. -.+|
T Consensus 153 ~ngk~~~lhr~~~~-~~-----~----~~~niwia~S~dl~~w~~~~~~l~~~~~~~~---d~~KIG~g~~Pik-t~eg- 217 (314)
T COG2152 153 INGKYALLHRPVLG-EY-----G----MKGNIWIAFSPDLEHWGIHRKLLGPRMGGWW---DELKIGWGTPPIK-TEEG- 217 (314)
T ss_pred ecCcEEEEEeeccc-cc-----C----ccCceEEEEcCCccCCCccceeeccccCCcc---hhhhccCCCCCcC-cccc-
Confidence 36899999653221 00 0 0245778889999999999876665444332 1334457876664 2444
Q ss_pred EEEEEEEeCCCCCcceEEEEEeCCCCCCceecc-cc----CCC------C--CCccCceEEEcCCCcEEEEEEecCCCcE
Q 012300 240 YVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLY-SK----RPH------G--FDSRDMTIFKDDDGVAYLVYSSEDNSEL 306 (466)
Q Consensus 240 Yyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~-~~----~p~------g--~~~iDp~vF~DdDG~~YL~~g~~~n~~i 306 (466)
|.+.|++.+.+-+..+.|.|.=| +++|.+..- +. .|. | .+.+=|+=+++.+|+..++||+-+ ..+
T Consensus 218 wLvlyHgv~~~~~~Yr~GaALlD-ledp~kvl~rS~~~IleP~~~yE~~Gdv~~VVF~CG~v~~~~~l~iyYGaAD-t~v 295 (314)
T COG2152 218 WLVLYHGVDETLTVYRLGAALLD-LEDPTKVLARSPEYILEPEELYERYGDVPNVVFPCGAVLLGDELLIYYGAAD-TSV 295 (314)
T ss_pred eEEEEeeccCccceEEeeeEEEc-CCCCcEEEecCCccccCccchhhhcCCcCcEEeecceEEECCEEEEEeeccc-cEE
Confidence 66666655443235788888876 367766431 11 121 1 123334444556789999998754 345
Q ss_pred EEEEc
Q 012300 307 HIGPL 311 (466)
Q Consensus 307 ~i~~L 311 (466)
.+++.
T Consensus 296 ~la~~ 300 (314)
T COG2152 296 GLAEI 300 (314)
T ss_pred EEEEe
Confidence 55554
No 80
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=93.55 E-value=5.2 Score=38.74 Aligned_cols=179 Identities=13% Similarity=0.184 Sum_probs=94.0
Q ss_pred CCcccceeeeeccCCcceEEeeeCCCCccCCCCCcc----CCCceeeecCceeeCCCCCeEE-----------eeCCceE
Q 012300 92 PKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDN----GNDSFYYYPGRIWLDTEGAPIQ-----------AHGGGIL 156 (466)
Q Consensus 92 ~~~~~~~v~~f~~~~~~v~~~~~p~~~t~~dp~~~~----~~~~~~i~pg~~w~dt~GnpI~-----------ahd~~Ii 156 (466)
...|||++... |......|. +.|++.. |+-++.+---..-....|+-+. +=|..+.
T Consensus 68 ~liwapeih~i---ngkwyiyfa------aa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqikt~wesfsldattf 138 (324)
T COG3940 68 NLIWAPEIHFI---NGKWYIYFA------AAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQIKTAWESFSLDATTF 138 (324)
T ss_pred hcccccceeEE---cceEEEEEe------ecCcccccccccceeEEEEecCCCCCCcccceecceeccchhcceeeeeee
Confidence 37899998877 777644444 4444432 4444333211110011122211 1244444
Q ss_pred EECCCCEEEEEEEeCCCCCccccccccceeccCcEEEEEeCCCCCCEEec--eeccCCCcccccccCCCCeee---eceE
Q 012300 157 YDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEG--IVLAAEETNETHDLYKLNVLE---RPKV 231 (466)
Q Consensus 157 ~~~~~g~YYlygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv~W~~~g--~vL~~~~~~~~~~~~~~~~iW---AP~v 231 (466)
.. .+..||+.++-+..- . +...|.+.+..+ .|+-.| +.|...+..|. -.++| .|.|
T Consensus 139 eh-~gk~yyvwaqkdp~i------~-----gnsniyiaemen--pwtikgepvmlskpe~dwe-----~~gfwvnegpav 199 (324)
T COG3940 139 EH-NGKLYYVWAQKDPNI------K-----GNSNIYIAEMEN--PWTIKGEPVMLSKPELDWE-----IKGFWVNEGPAV 199 (324)
T ss_pred ee-CCEEEEEEeccCCCc------c-----CCcceEEEeccC--CceecCceEEecCCCcccE-----EEEEEecCCceE
Confidence 43 457788887643210 1 123466666655 577665 45655555442 23344 6899
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCC---CCCC--ceeccc------cCCCCCCccCceEEEcCCCc-EEEEEE
Q 012300 232 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDY---PTGP--FDYLYS------KRPHGFDSRDMTIFKDDDGV-AYLVYS 299 (466)
Q Consensus 232 iyn~~~GkYyly~s~~~~~~~~~~IGVA~Sds---P~GP--f~~~~~------~~p~g~~~iDp~vF~DdDG~-~YL~~g 299 (466)
+. ++||-++-|++...+ ...|+|+..+.. +..| |+.... .....++....++-+.+||+ --|+|.
T Consensus 200 ~k--~ngkifi~ysasatd-~nycmgllwanen~dlldpaswtksptpvf~ts~en~qygpghnsftvtedgkhdvlvyh 276 (324)
T COG3940 200 LK--KNGKIFITYSASATD-VNYCMGLLWANENSDLLDPASWTKSPTPVFKTSMENHQYGPGHNSFTVTEDGKHDVLVYH 276 (324)
T ss_pred EE--ECCEEEEEEeccccc-cceeeeeeeecccCCcCCchhcccCCCcceeeehhccccCCCCCceEecCCCcccEEEEe
Confidence 95 999999999876543 357999988753 3333 443211 01111233444556667885 467776
Q ss_pred ec
Q 012300 300 SE 301 (466)
Q Consensus 300 ~~ 301 (466)
..
T Consensus 277 ar 278 (324)
T COG3940 277 AR 278 (324)
T ss_pred cc
Confidence 54
No 81
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=93.48 E-value=7.1 Score=38.04 Aligned_cols=172 Identities=14% Similarity=0.094 Sum_probs=95.2
Q ss_pred cCcEEEEEe--CCC-CCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC--CCCcceEEEEEeC
Q 012300 188 IIGVGCYSS--KDM-WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC--NYTKAAVGVAISD 262 (466)
Q Consensus 188 ~~gi~v~sS--~DL-v~W~~~g~vL~~~~~~~~~~~~~~~~iWAP~viyn~~~GkYyly~s~~~~--~~~~~~IGVA~Sd 262 (466)
...+.++.| +|. .+|+....+..... .....+-|.+++++ +|+.+|+|..... ......+...+|+
T Consensus 15 ~~d~~i~~S~s~D~G~tWs~~~~v~~~~~--------~~~~~~~p~~~~~~-~g~l~l~~~~~~~~~~~~~~~~~~~~S~ 85 (275)
T PF13088_consen 15 AIDIVIRRSRSTDGGKTWSEPRIVADGPK--------PGRRYGNPSLVVDP-DGRLWLFYSAGSSGGGWSGSRIYYSRST 85 (275)
T ss_dssp CEEEEEEEECCCCCTTEEEEEEEEETSTB--------TTCEEEEEEEEEET-TSEEEEEEEEEETTESCCTCEEEEEEES
T ss_pred CCCEEEEEEEeeCCCCeeCCCEEEeeccc--------cCCcccCcEEEEeC-CCCEEEEEEEccCCCCCCceeEEEEEEC
Confidence 346788888 887 56999988776541 24567899999865 9999998854432 1234555568888
Q ss_pred CCCCCceeccccCC--CC--CCccCceEEEcCCCcEEEEEEecC--CCcEEEEEcCCCCCCccccEEEeecC-ceeeeeE
Q 012300 263 YPTGPFDYLYSKRP--HG--FDSRDMTIFKDDDGVAYLVYSSED--NSELHIGPLTSDYLDVSNVVRRILVG-QHREAPA 335 (466)
Q Consensus 263 sP~GPf~~~~~~~p--~g--~~~iDp~vF~DdDG~~YL~~g~~~--n~~i~i~~Ls~D~~~~~g~~~~i~~g-~~~EgP~ 335 (466)
+---.|+......+ .. .......+++-.||+.++.+.... +....+..-++...++... ..+... ...|...
T Consensus 86 D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~-~~~~~~~~~~e~~~ 164 (275)
T PF13088_consen 86 DGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSG-SPIPDGQGECEPSI 164 (275)
T ss_dssp STTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEE-EECECSEEEEEEEE
T ss_pred CCCCCCCCccccccccccceeccceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeecc-ccccccCCcceeEE
Confidence 74346876532110 11 112233234446898888643321 1233333333344444221 112122 3455555
Q ss_pred EEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCcee
Q 012300 336 LFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWED 372 (466)
Q Consensus 336 ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~ 372 (466)
+...+|..++++-.. +. .....++|++--.-|+.
T Consensus 165 ~~~~dG~l~~~~R~~-~~--~~~~~~~S~D~G~TWs~ 198 (275)
T PF13088_consen 165 VELPDGRLLAVFRTE-GN--DDIYISRSTDGGRTWSP 198 (275)
T ss_dssp EEETTSEEEEEEEEC-SS--TEEEEEEESSTTSS-EE
T ss_pred EECCCCcEEEEEEcc-CC--CcEEEEEECCCCCcCCC
Confidence 555689999998653 11 13344467766556876
No 82
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=89.67 E-value=27 Score=35.89 Aligned_cols=168 Identities=23% Similarity=0.420 Sum_probs=88.0
Q ss_pred cCCE-EEEEEEEeCCC-----CCcceEEEEEeCCCCCCceeccc-cCCC-----CCCc----cCceEEEcCCCcEEEEEE
Q 012300 236 RTGK-YVMWMHIDDCN-----YTKAAVGVAISDYPTGPFDYLYS-KRPH-----GFDS----RDMTIFKDDDGVAYLVYS 299 (466)
Q Consensus 236 ~~Gk-Yyly~s~~~~~-----~~~~~IGVA~SdsP~GPf~~~~~-~~p~-----g~~~----iDp~vF~DdDG~~YL~~g 299 (466)
.+|+ |+.|.+.+.-+ +..-.-++|.|++.-..|+.... ..+. |... .=+.-|..+||-.|++=.
T Consensus 103 v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~~~~~~~~~~~~g~~~~~~~fq~~a~~~~dgyVYv~gt 182 (316)
T PF13810_consen 103 VGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVPGTIRPNSPFHPGFNQGNWNFQMAAFVKDDGYVYVYGT 182 (316)
T ss_pred ECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCCCcccccccccCCccccccccccccccCCCCEEEEEeC
Confidence 5565 55555554321 11225789999997778887642 1221 1111 112224346777777543
Q ss_pred ecC-CCcEEEEEcCCCCC-C------cccc---E-------EEeecCceeeeeEEEE-ECCEEEEEEeCCCCCCCCcEEE
Q 012300 300 SED-NSELHIGPLTSDYL-D------VSNV---V-------RRILVGQHREAPALFK-HLGTYYMVTSGCTGWAPNEALV 360 (466)
Q Consensus 300 ~~~-n~~i~i~~Ls~D~~-~------~~g~---~-------~~i~~g~~~EgP~ifK-~~G~YYL~yS~~tg~~~n~~v~ 360 (466)
..+ ++.+++++..++-+ . +.+. . ..|+.+..-|-....- +.|+|-|+|-.. .++.+.
T Consensus 183 ~~~R~g~~~LaRV~~~~i~d~~ayeyw~g~~~~W~~~~~~atpv~~~~vgElSv~~~~~~gk~Vl~~~~~----~~~~I~ 258 (316)
T PF13810_consen 183 PFGRNGGVYLARVPPDDILDRSAYEYWDGSGGGWSWGNPPATPVLPGPVGELSVRYNEYLGKWVLSYFDA----GTGGIV 258 (316)
T ss_pred CCCCCCcEEEEEeCHHHCCChhhccccCCCCcccccCCCCccccccCCccceEEEEeCCCCEEEEEEecc----cCCcEE
Confidence 222 46788888765311 1 1111 1 3445555667643332 389999999653 123444
Q ss_pred -EEeCCCCCCceeCCCccccCCccceeeccCCCceEEEcccCCcc-cEEEEEeEeC
Q 012300 361 -HAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPG-LYIFMADRWN 414 (466)
Q Consensus 361 -~~Sds~~GPw~~~gnPi~~~~~~~~~~t~~sq~~~v~~~~G~~~-~yi~~~d~w~ 414 (466)
.+|++|.|||+.....+.... . ...| +++|.|---..+ .|+++ -+|+
T Consensus 259 ~RtA~~P~GpWs~~~~l~~~~~-~--~~lY---ggyihP~s~~g~~L~~~v-S~W~ 307 (316)
T PF13810_consen 259 LRTAPSPTGPWSEPKPLVTVEE-V--PQLY---GGYIHPWSTSGDDLYFVV-SQWN 307 (316)
T ss_pred EEecCCCCCCCCCCeeEEeCCc-C--Ccce---eeEeCCCccCCCCEEEEE-EEcc
Confidence 479999999986532222111 1 1233 356766542223 45444 5776
No 83
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=89.29 E-value=23 Score=35.04 Aligned_cols=171 Identities=13% Similarity=0.173 Sum_probs=92.9
Q ss_pred eeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccccCC--CCCCccCceEEE-cCCCcEEEEEEecC
Q 012300 226 LERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRP--HGFDSRDMTIFK-DDDGVAYLVYSSED 302 (466)
Q Consensus 226 iWAP~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p--~g~~~iDp~vF~-DdDG~~YL~~g~~~ 302 (466)
+=-|.+++ .||||.+|.+..+...+-..+.+. +.-.|........ ......=|.||. .+...+||+|- |+
T Consensus 25 lKD~T~V~--ynGk~~VyAtt~d~~~~y~sm~f~----~Ftdws~~~sA~q~~m~~~~vAP~vFYFaPk~~W~L~yQ-wg 97 (271)
T PF03664_consen 25 LKDFTIVP--YNGKHHVYATTADTGGGYGSMNFG----PFTDWSQMASASQNYMDQSAVAPQVFYFAPKNIWYLAYQ-WG 97 (271)
T ss_pred ccCceEEe--ECCEEEEEEEeccCCCccceEeee----ccCCHHHhhccccccCCcccccceEEEecCCcEEEEEEe-cC
Confidence 33488886 899999998876432111122221 1112333322111 122356788876 46778999997 33
Q ss_pred CCcEEEEEcCCCCCCccc--cEEEeecC------ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEeCCCCCCceeC-
Q 012300 303 NSELHIGPLTSDYLDVSN--VVRRILVG------QHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM- 373 (466)
Q Consensus 303 n~~i~i~~Ls~D~~~~~g--~~~~i~~g------~~~EgP~ifK~~G~YYL~yS~~tg~~~n~~v~~~Sds~~GPw~~~- 373 (466)
+ .....+.+.|.....| .++.++.+ ...=..+|+-.+-.-|||+++..| ..|||.-+.|.|-..
T Consensus 98 ~-~~fsY~Ts~DptnpngWSapq~lf~g~i~~~~~g~iD~~vI~D~~n~yLFfa~DnG------kiYRs~~~i~nFP~~f 170 (271)
T PF03664_consen 98 P-AAFSYSTSSDPTNPNGWSAPQPLFSGSISGSGTGPIDQWVICDDTNMYLFFAGDNG------KIYRSSMPIGNFPGGF 170 (271)
T ss_pred C-CcceeecCCCCCCCccCCCCcccccccccCCCCCceeeEEEecCCceEEEEcCCCC------cEEEeccchhhCCCCC
Confidence 2 2234455666655443 23333322 112345677778889999986432 256888888876544
Q ss_pred C-Cc--cccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCC
Q 012300 374 G-NP--CIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPA 416 (466)
Q Consensus 374 g-nP--i~~~~~~~~~~t~~sq~~~v~~~~G~~~~yi~~~d~w~~~ 416 (466)
| ++ ++.+.. ..-|.. .-|-+++|. +.||++-....+.
T Consensus 171 gs~~~vvmsd~~---~nLFEA--~~VYkv~G~-~~YLmiVEaiGs~ 210 (271)
T PF03664_consen 171 GSSYTVVMSDTR---NNLFEA--VQVYKVKGQ-NQYLMIVEAIGSD 210 (271)
T ss_pred CCceEEEEecCc---cceeee--eEEEEEcCC-ceEEEEEEEecCC
Confidence 3 22 222211 122222 346677773 5688887777653
No 84
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=72.11 E-value=5.6 Score=40.77 Aligned_cols=68 Identities=19% Similarity=0.134 Sum_probs=43.2
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccc-C---CCC--CCccCceEEEcCCCcEEEEEEecC
Q 012300 229 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK-R---PHG--FDSRDMTIFKDDDGVAYLVYSSED 302 (466)
Q Consensus 229 P~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~GPf~~~~~~-~---p~g--~~~iDp~vF~DdDG~~YL~~g~~~ 302 (466)
-+|.|++..|||+|.|.-. ....|.+.+|++|+|||+..... . ..+ ...|.|..- .+...|++.+.|+
T Consensus 234 lSv~~~~~~gk~Vl~~~~~----~~~~I~~RtA~~P~GpWs~~~~l~~~~~~~~lYggyihP~s~--~g~~L~~~vS~W~ 307 (316)
T PF13810_consen 234 LSVRYNEYLGKWVLSYFDA----GTGGIVLRTAPSPTGPWSEPKPLVTVEEVPQLYGGYIHPWST--SGDDLYFVVSQWN 307 (316)
T ss_pred eEEEEeCCCCEEEEEEecc----cCCcEEEEecCCCCCCCCCCeeEEeCCcCCcceeeEeCCCcc--CCCCEEEEEEEcc
Confidence 4788988899999877532 23579999999999999853221 0 011 123555432 1234777777664
No 85
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=48.95 E-value=1.8e+02 Score=28.99 Aligned_cols=68 Identities=18% Similarity=0.345 Sum_probs=43.7
Q ss_pred CCccCceEEEcCCCcEEEEEEec-CCCcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCC
Q 012300 279 FDSRDMTIFKDDDGVAYLVYSSE-DNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCT 351 (466)
Q Consensus 279 ~~~iDp~vF~DdDG~~YL~~g~~-~n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~t 351 (466)
..-|| +-+|+.| .|.+|.+. .++.|.+++|++..+.+......-...+...+.+|+ =|..|.+.|..+
T Consensus 122 ~sdiD--~avDE~G-LWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~i--CGvLY~v~S~~~ 190 (249)
T KOG3545|consen 122 HSDID--LAVDENG-LWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAGNAFMI--CGVLYVVHSYNC 190 (249)
T ss_pred Ccccc--ceecccc-eeEEecccccCCcEEeeccCHHHhheeeeeccccCCCCcCceEEE--eeeeEEEecccc
Confidence 33455 4557776 67777775 457888899999766555444333334445555554 489999998654
No 86
>smart00284 OLF Olfactomedin-like domains.
Probab=48.72 E-value=50 Score=32.95 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=45.2
Q ss_pred cCceEEEcCCCcEEEEEEecC-CCcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeC
Q 012300 282 RDMTIFKDDDGVAYLVYSSED-NSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSG 349 (466)
Q Consensus 282 iDp~vF~DdDG~~YL~~g~~~-n~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~ 349 (466)
-|..+-+|+.| .|.+|.+.. ++.|.++||+++-+++...+..-...+..+.++|+ =|.-|.+.|.
T Consensus 129 sdiDlAvDE~G-LWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmv--CGvLY~~~s~ 194 (255)
T smart00284 129 SDIDLAVDENG-LWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMI--CGILYVTRSL 194 (255)
T ss_pred ccEEEEEcCCc-eEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEE--eeEEEEEccC
Confidence 34446668776 678888754 47899999999888876655544444556666555 4888888773
No 87
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=42.84 E-value=3.7e+02 Score=27.12 Aligned_cols=175 Identities=11% Similarity=0.107 Sum_probs=89.6
Q ss_pred cEEEEEeCC-CCCCEEeceeccCCCc-ccccccCCCCeeeec--eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCC
Q 012300 190 GVGCYSSKD-MWTWKNEGIVLAAEET-NETHDLYKLNVLERP--KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPT 265 (466)
Q Consensus 190 gi~v~sS~D-Lv~W~~~g~vL~~~~~-~~~~~~~~~~~iWAP--~viyn~~~GkYyly~s~~~~~~~~~~IGVA~SdsP~ 265 (466)
.+.+..|+| ..+|+....+...... .|. ..+=+| -+.. .+|+.++-+...... ......+..|++--
T Consensus 113 ~~~~~~S~D~G~tW~~p~~l~~~~~~~~~~------~~~~~~g~gi~l--~~Grlv~p~~~~~~~-~~~~~~~~~S~D~G 183 (351)
T cd00260 113 YLVLVYSDDDGITWSSPRDLTPSVKGDNWA------ALFTGPGSGIQM--KDGRLVFPVYGGNAG-GRVSSAIIYSDDSG 183 (351)
T ss_pred EEEEEEEEcCCceecCCccCCccccCccee------EEEecCcCeEEe--cCCcEEEEEEEEcCC-CCEEEEEEEECCCC
Confidence 355666666 4789876544332210 111 011111 2333 578887766544322 23456777888854
Q ss_pred CCceeccccCCCCCCccCceEEEcCCCcEEEEEEecCCCcEEEEEcCCCCCCccccEEEe---------ecCceeeeeEE
Q 012300 266 GPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRI---------LVGQHREAPAL 336 (466)
Q Consensus 266 GPf~~~~~~~p~g~~~iDp~vF~DdDG~~YL~~g~~~n~~i~i~~Ls~D~~~~~g~~~~i---------~~g~~~EgP~i 336 (466)
-.|+..... +.......|.++.-.||+.+|+......+...+++-++...++....... ......++..+
T Consensus 184 ~tW~~~~~~-~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~g~~~~~i 262 (351)
T cd00260 184 KTWKLGEGV-NDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESRDMGTTWTEALGTLSRVWGNCPTRCGSGVQGSFI 262 (351)
T ss_pred CCcEECCCC-CCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEcCCCcCcccCcCCccccccccccCCCCcccceEE
Confidence 468754221 11145678899987799999887764234566666555556665432111 11223333333
Q ss_pred EEE-C-CEEEEEEeCCCCC-CCCcEEEEEeCCCCCCceeCC
Q 012300 337 FKH-L-GTYYMVTSGCTGW-APNEALVHAAESIMGPWEDMG 374 (466)
Q Consensus 337 fK~-~-G~YYL~yS~~tg~-~~n~~v~~~Sds~~GPw~~~g 374 (466)
-.. + |+-.|+++..... .......+.+++-..-|....
T Consensus 263 ~~~~~~g~~~ll~~~~~~~~~R~~l~l~~s~d~g~~w~~~~ 303 (351)
T cd00260 263 TATIESGKKVMLLSRPNSPDSRSNLTLWLTDNNGSRWLDVG 303 (351)
T ss_pred EeEecCCCEEEEEeCCCCCCCCCceEEEEEeCCCceEEeee
Confidence 322 3 7777888753211 122223345554444566554
No 88
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=33.04 E-value=1.7e+02 Score=29.00 Aligned_cols=66 Identities=21% Similarity=0.358 Sum_probs=44.9
Q ss_pred CceEEEcCCCcEEEEEEecCC-CcEEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCC
Q 012300 283 DMTIFKDDDGVAYLVYSSEDN-SELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCT 351 (466)
Q Consensus 283 Dp~vF~DdDG~~YL~~g~~~n-~~i~i~~Ls~D~~~~~g~~~~i~~g~~~EgP~ifK~~G~YYL~yS~~t 351 (466)
|..+-+|+.| .|++|....+ +.|.+++|+++-+++...+..-...+..+..+| .=|..|.+.|..+
T Consensus 125 ~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFm--vCGvLY~~~s~~~ 191 (250)
T PF02191_consen 125 DIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFM--VCGVLYATDSYDT 191 (250)
T ss_pred eEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhcceee--EeeEEEEEEECCC
Confidence 3345557765 7888887654 579999999988877655544344444555555 4599999988644
No 89
>cd00184 TNF Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal domain, a short transmembrane segment, an extracellular stalk, and a globular TNF-like extracellular domain of about 150 residues. They initiate apoptosis by binding to related receptors, some of which have intracellular death domains. They generally form homo- or hetero- trimeric complexes.TNF cytokines bind one elongated receptor molecule along each of three clefts formed by neighboring monomers of the trimer with ligand trimerization a requiste for receptor binding.
Probab=22.78 E-value=1.3e+02 Score=26.49 Aligned_cols=32 Identities=19% Similarity=0.551 Sum_probs=19.9
Q ss_pred CceeeCCCCCeEE-----eeCCceEEECCCCEEEEEEE
Q 012300 137 GRIWLDTEGAPIQ-----AHGGGILYDERSRTYFWYGE 169 (466)
Q Consensus 137 g~~w~dt~GnpI~-----ahd~~Ii~~~~~g~YYlygT 169 (466)
...|....|+... -+++.|+. +.+|.||+|+.
T Consensus 16 ~l~W~~~~g~a~~~~g~~~~~g~L~V-~~~GlY~VYsQ 52 (137)
T cd00184 16 GLSWESDDGRAFLSGGLELQNGELVV-PQDGLYYIYSQ 52 (137)
T ss_pred cceeecCCCceeeeCCeEEECCEEEe-cCCcEEEEEEE
Confidence 3457665443332 35655554 56899999986
No 90
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=20.26 E-value=5.6e+02 Score=26.36 Aligned_cols=118 Identities=23% Similarity=0.282 Sum_probs=53.3
Q ss_pred eeeceEEEEccCCEEEEEEEEe-CCC-----CCcceEEEEEeCCCCCCceeccccCCCCC-CccCceEEE-cCCCcEEEE
Q 012300 226 LERPKVIYNDRTGKYVMWMHID-DCN-----YTKAAVGVAISDYPTGPFDYLYSKRPHGF-DSRDMTIFK-DDDGVAYLV 297 (466)
Q Consensus 226 iWAP~viyn~~~GkYyly~s~~-~~~-----~~~~~IGVA~SdsP~GPf~~~~~~~p~g~-~~iDp~vF~-DdDG~~YL~ 297 (466)
.=.|.|.+ .++|+|++++..- +.. .....|.|.-.++ .|.....-. .+.+. ....|.+.- |.||..-.+
T Consensus 148 ~s~P~I~~-~~~g~w~~i~g~Gy~~~~~~~~~~~~~lyi~d~~t-~G~l~~~i~-~~~~~~gl~~~~~~D~d~DG~~D~v 224 (335)
T PF05567_consen 148 WSKPQIAK-VKNGKWVVIFGSGYNSDDVDSSSGGAALYILDADT-TGALIKKID-VPGGSGGLSSPAVVDSDGDGYVDRV 224 (335)
T ss_dssp -S--EEEE-ETTSSEEEEEE--BS-TT-------EEEEEEETTT----EEEEEE-E--STT-EEEEEEE-TTSSSEE-EE
T ss_pred ccCCEEEE-ccCCcEEEEEccCCCCCcccccCCCcEEEEEECCC-CCceEEEEe-cCCCCccccccEEEeccCCCeEEEE
Confidence 34688887 5789999988642 111 1345677777766 454332111 11111 234566552 458887666
Q ss_pred EEecCCCcEEEEEcCCCC-CCccccEEEeecC--ceeeeeEEEEECCEEEEEEe
Q 012300 298 YSSEDNSELHIGPLTSDY-LDVSNVVRRILVG--QHREAPALFKHLGTYYMVTS 348 (466)
Q Consensus 298 ~g~~~n~~i~i~~Ls~D~-~~~~g~~~~i~~g--~~~EgP~ifK~~G~YYL~yS 348 (466)
|.+.-.++++-..|+... ..+. ...++.+ ....+|.+.+..+..++++.
T Consensus 225 YaGDl~GnlwR~dl~~~~~~~~~--~~~~~~g~~PIt~aP~v~~~~~~~~V~fG 276 (335)
T PF05567_consen 225 YAGDLGGNLWRFDLSSANPSSWS--VRTIFSGTQPITAAPAVVRDPDGRWVFFG 276 (335)
T ss_dssp EEEETTSEEEEEE--TTSTT-GG---EESGGG-----S--EEEE-TTSSEEEEE
T ss_pred EEEcCCCcEEEEECCCCCcccce--eeecccCcCCeEecceEEecCCCCEEEEE
Confidence 666555778777775432 2221 2223322 47888999888555566664
Done!