Query 012301
Match_columns 466
No_of_seqs 385 out of 2665
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 01:11:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 3.4E-91 7.3E-96 697.9 34.8 347 75-434 2-351 (371)
2 PRK14296 chaperone protein Dna 100.0 6.9E-81 1.5E-85 639.4 37.0 345 76-433 3-361 (372)
3 PRK14288 chaperone protein Dna 100.0 5.9E-79 1.3E-83 624.9 35.6 343 76-434 2-346 (369)
4 PRK14277 chaperone protein Dna 100.0 2.1E-78 4.5E-83 624.7 36.5 351 75-434 3-366 (386)
5 PRK14298 chaperone protein Dna 100.0 3.8E-78 8.3E-83 620.1 37.0 346 76-435 4-353 (377)
6 PRK14287 chaperone protein Dna 100.0 4E-78 8.6E-83 619.2 36.5 346 76-434 3-349 (371)
7 PRK14280 chaperone protein Dna 100.0 5.5E-78 1.2E-82 619.5 37.4 346 77-434 4-354 (376)
8 PRK14276 chaperone protein Dna 100.0 4.7E-78 1E-82 620.9 36.8 347 76-434 3-357 (380)
9 PRK14286 chaperone protein Dna 100.0 9.4E-78 2E-82 616.6 36.5 348 76-435 3-359 (372)
10 PRK14278 chaperone protein Dna 100.0 1.6E-77 3.4E-82 616.2 36.7 347 76-434 2-351 (378)
11 PTZ00037 DnaJ_C chaperone prot 100.0 1.1E-77 2.5E-82 621.5 34.9 334 75-433 26-366 (421)
12 PRK14297 chaperone protein Dna 100.0 2.3E-77 4.9E-82 616.1 36.7 350 76-435 3-360 (380)
13 PRK14279 chaperone protein Dna 100.0 2.3E-77 5E-82 617.2 35.1 353 75-434 7-379 (392)
14 PRK14281 chaperone protein Dna 100.0 1.9E-76 4.2E-81 611.7 35.9 356 76-433 2-372 (397)
15 PRK14282 chaperone protein Dna 100.0 5.4E-76 1.2E-80 603.7 37.9 349 76-435 3-365 (369)
16 PRK14285 chaperone protein Dna 100.0 2.3E-76 5E-81 604.9 35.0 345 76-436 2-356 (365)
17 PRK14301 chaperone protein Dna 100.0 3.8E-76 8.2E-81 604.9 35.1 346 76-434 3-351 (373)
18 PRK14295 chaperone protein Dna 100.0 1.6E-75 3.4E-80 603.0 37.0 354 75-434 7-373 (389)
19 PRK14294 chaperone protein Dna 100.0 1.4E-75 3E-80 600.0 36.0 346 76-435 3-352 (366)
20 TIGR02349 DnaJ_bact chaperone 100.0 1.7E-75 3.7E-80 598.0 35.7 346 78-433 1-353 (354)
21 PRK14284 chaperone protein Dna 100.0 2.5E-75 5.4E-80 602.7 36.6 346 77-434 1-367 (391)
22 PRK14283 chaperone protein Dna 100.0 1.4E-74 3.1E-79 595.0 36.9 353 75-434 3-357 (378)
23 PRK14293 chaperone protein Dna 100.0 1.3E-74 2.8E-79 594.6 35.5 354 76-435 2-356 (374)
24 PRK14300 chaperone protein Dna 100.0 1.6E-74 3.4E-79 593.1 35.9 346 76-433 2-352 (372)
25 PRK14291 chaperone protein Dna 100.0 2.2E-74 4.8E-79 594.0 36.0 357 76-438 2-375 (382)
26 PRK10767 chaperone protein Dna 100.0 3.2E-74 7E-79 591.6 36.2 344 76-433 3-348 (371)
27 PRK14289 chaperone protein Dna 100.0 8.2E-74 1.8E-78 591.2 36.7 355 76-433 4-364 (386)
28 PRK14290 chaperone protein Dna 100.0 5.6E-73 1.2E-77 580.6 36.4 351 76-436 2-359 (365)
29 PRK14292 chaperone protein Dna 100.0 1.6E-72 3.5E-77 579.0 35.5 346 77-434 2-349 (371)
30 KOG0712 Molecular chaperone (D 100.0 8.5E-69 1.8E-73 529.7 24.8 329 76-431 3-337 (337)
31 PRK14299 chaperone protein Dna 100.0 4.7E-58 1E-62 456.8 28.5 276 76-435 3-288 (291)
32 PRK10266 curved DNA-binding pr 100.0 1.7E-56 3.6E-61 448.9 30.0 285 77-434 4-294 (306)
33 KOG0713 Molecular chaperone (D 100.0 1.2E-41 2.7E-46 332.5 9.5 315 72-421 11-328 (336)
34 KOG0715 Molecular chaperone (D 100.0 1.4E-40 3E-45 329.0 14.5 245 78-358 44-288 (288)
35 TIGR03835 termin_org_DnaJ term 100.0 4.4E-39 9.5E-44 341.0 24.8 124 291-418 693-817 (871)
36 KOG0714 Molecular chaperone (D 99.9 7.1E-21 1.5E-25 188.4 15.5 263 75-397 1-305 (306)
37 PF01556 CTDII: DnaJ C termina 99.8 5.4E-21 1.2E-25 154.8 8.6 80 347-426 1-81 (81)
38 KOG0716 Molecular chaperone (D 99.8 2E-19 4.4E-24 171.4 6.2 73 76-148 30-103 (279)
39 KOG0718 Molecular chaperone (D 99.7 4.3E-18 9.4E-23 172.0 5.3 72 76-147 8-83 (546)
40 COG2214 CbpA DnaJ-class molecu 99.7 1.3E-16 2.9E-21 150.9 14.2 69 74-142 3-73 (237)
41 PTZ00341 Ring-infected erythro 99.7 5.4E-18 1.2E-22 184.9 4.6 77 72-148 568-644 (1136)
42 PF00226 DnaJ: DnaJ domain; I 99.7 2.7E-17 5.8E-22 126.9 5.2 62 78-139 1-64 (64)
43 KOG0691 Molecular chaperone (D 99.7 7.6E-17 1.6E-21 158.9 5.7 88 76-170 4-92 (296)
44 KOG0717 Molecular chaperone (D 99.6 4.3E-17 9.4E-22 164.9 3.0 73 75-147 6-80 (508)
45 COG0484 DnaJ DnaJ-class molecu 99.6 4.6E-16 9.9E-21 157.0 7.9 119 220-350 157-345 (371)
46 KOG0719 Molecular chaperone (D 99.6 5.7E-16 1.2E-20 144.5 5.4 69 76-144 13-84 (264)
47 PHA03102 Small T antigen; Revi 99.6 9.5E-16 2.1E-20 137.5 6.2 67 77-146 5-73 (153)
48 smart00271 DnaJ DnaJ molecular 99.6 2.2E-15 4.7E-20 114.5 5.6 58 77-134 1-60 (60)
49 KOG0624 dsRNA-activated protei 99.6 3.4E-15 7.3E-20 146.8 8.2 71 76-147 393-467 (504)
50 KOG0721 Molecular chaperone (D 99.6 3E-15 6.5E-20 138.6 6.3 71 76-146 98-169 (230)
51 cd06257 DnaJ DnaJ domain or J- 99.6 5.1E-15 1.1E-19 110.3 6.0 54 78-131 1-55 (55)
52 PRK14284 chaperone protein Dna 99.6 1.2E-14 2.6E-19 150.9 10.3 119 221-351 174-362 (391)
53 PRK14282 chaperone protein Dna 99.5 1.2E-14 2.6E-19 149.9 8.7 119 221-351 168-359 (369)
54 PRK14298 chaperone protein Dna 99.5 1.8E-14 3.9E-19 148.8 8.0 120 221-352 157-348 (377)
55 PRK14294 chaperone protein Dna 99.5 2.3E-14 5E-19 147.6 8.2 120 221-352 160-347 (366)
56 PRK14290 chaperone protein Dna 99.5 2.6E-14 5.6E-19 147.1 7.8 120 221-352 164-353 (365)
57 PRK10767 chaperone protein Dna 99.5 3.3E-14 7.2E-19 146.7 8.2 120 221-352 158-345 (371)
58 PRK14285 chaperone protein Dna 99.5 4.4E-14 9.5E-19 145.3 8.4 119 221-351 162-349 (365)
59 PRK14301 chaperone protein Dna 99.5 4.6E-14 1E-18 145.6 8.2 120 220-351 159-346 (373)
60 PRK14300 chaperone protein Dna 99.5 9E-14 2E-18 143.4 9.2 118 221-350 161-347 (372)
61 PRK14278 chaperone protein Dna 99.5 1.1E-13 2.3E-18 143.1 9.1 118 221-350 155-345 (378)
62 PRK14286 chaperone protein Dna 99.5 1.2E-13 2.5E-18 142.6 8.7 118 221-350 166-352 (372)
63 PRK14287 chaperone protein Dna 99.5 1E-13 2.2E-18 142.9 7.9 119 221-351 154-344 (371)
64 PRK14279 chaperone protein Dna 99.4 1.5E-13 3.2E-18 142.7 8.6 117 221-350 189-373 (392)
65 PRK14288 chaperone protein Dna 99.4 1.4E-13 3E-18 141.8 8.1 117 221-349 155-339 (369)
66 TIGR02349 DnaJ_bact chaperone 99.4 1.6E-13 3.4E-18 141.0 7.9 116 222-349 160-347 (354)
67 PRK14280 chaperone protein Dna 99.4 2.3E-13 4.9E-18 140.7 9.1 118 221-350 159-348 (376)
68 PRK14276 chaperone protein Dna 99.4 1.6E-13 3.5E-18 142.0 7.7 118 221-350 162-351 (380)
69 PRK14281 chaperone protein Dna 99.4 1.5E-13 3.2E-18 142.9 7.5 118 221-350 178-367 (397)
70 PRK14296 chaperone protein Dna 99.4 3.1E-13 6.8E-18 139.3 8.6 118 221-350 165-356 (372)
71 PRK14277 chaperone protein Dna 99.4 3.4E-13 7.3E-18 139.9 8.7 118 221-350 171-360 (386)
72 PRK14297 chaperone protein Dna 99.4 3.8E-13 8.2E-18 139.3 8.8 116 222-349 165-352 (380)
73 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.4 3.9E-13 8.5E-18 104.4 6.3 65 225-289 1-66 (66)
74 PRK14295 chaperone protein Dna 99.4 4.8E-13 1E-17 138.7 8.9 117 221-350 182-367 (389)
75 PRK14289 chaperone protein Dna 99.4 4.3E-13 9.3E-18 139.2 8.3 117 220-348 169-357 (386)
76 PRK14293 chaperone protein Dna 99.4 4.5E-13 9.7E-18 138.4 8.2 120 221-352 159-351 (374)
77 PRK14283 chaperone protein Dna 99.4 6.8E-13 1.5E-17 137.3 8.8 118 221-350 162-351 (378)
78 KOG0550 Molecular chaperone (D 99.4 3.3E-13 7.2E-18 135.7 5.4 90 74-168 370-461 (486)
79 KOG0722 Molecular chaperone (D 99.4 1.7E-13 3.8E-18 129.2 3.0 72 71-142 27-98 (329)
80 PTZ00037 DnaJ_C chaperone prot 99.4 8E-13 1.7E-17 137.9 7.5 117 221-347 165-358 (421)
81 PRK14291 chaperone protein Dna 99.3 2.1E-12 4.5E-17 133.8 9.0 109 221-342 172-351 (382)
82 PRK14292 chaperone protein Dna 99.3 1.4E-12 3.1E-17 134.6 7.8 129 210-350 145-343 (371)
83 PRK01356 hscB co-chaperone Hsc 99.3 1.1E-12 2.4E-17 120.1 6.0 65 77-141 2-72 (166)
84 PRK05014 hscB co-chaperone Hsc 99.3 1.4E-12 3E-17 120.2 6.4 64 77-140 1-72 (171)
85 KOG0720 Molecular chaperone (D 99.3 1.5E-12 3.2E-17 132.4 4.7 66 76-141 234-299 (490)
86 PRK00294 hscB co-chaperone Hsc 99.3 6.9E-12 1.5E-16 115.5 6.8 65 76-140 3-75 (173)
87 PRK03578 hscB co-chaperone Hsc 99.3 7.1E-12 1.5E-16 115.9 6.5 65 76-140 5-77 (176)
88 PTZ00100 DnaJ chaperone protei 99.3 6.5E-12 1.4E-16 107.2 5.6 51 77-130 65-115 (116)
89 PRK09430 djlA Dna-J like membr 99.2 2.9E-11 6.3E-16 119.2 5.4 55 77-131 200-262 (267)
90 PHA02624 large T antigen; Prov 99.1 5.4E-11 1.2E-15 126.8 5.9 60 76-138 10-71 (647)
91 COG5407 SEC63 Preprotein trans 99.0 1.3E-10 2.9E-15 117.6 4.2 72 77-148 98-175 (610)
92 PF01556 CTDII: DnaJ C termina 99.0 6.2E-10 1.4E-14 90.0 4.4 51 295-345 27-78 (81)
93 PRK01773 hscB co-chaperone Hsc 98.8 5.2E-09 1.1E-13 96.5 6.6 64 77-140 2-73 (173)
94 COG5269 ZUO1 Ribosome-associat 98.8 2.1E-09 4.6E-14 102.6 3.5 73 70-142 36-114 (379)
95 KOG0712 Molecular chaperone (D 98.8 7.1E-09 1.5E-13 103.9 7.2 105 224-339 145-324 (337)
96 TIGR00714 hscB Fe-S protein as 98.8 7.5E-09 1.6E-13 94.2 5.9 53 89-141 3-61 (157)
97 PRK14299 chaperone protein Dna 98.8 2.4E-08 5.1E-13 100.0 9.4 72 341-420 125-197 (291)
98 KOG1150 Predicted molecular ch 98.7 2.1E-08 4.5E-13 92.0 4.6 62 75-136 51-114 (250)
99 PLN03165 chaperone protein dna 98.6 9.1E-08 2E-12 81.3 5.6 61 221-293 40-100 (111)
100 PRK10266 curved DNA-binding pr 98.5 3.4E-07 7.4E-12 92.3 9.5 73 343-417 115-201 (306)
101 KOG0568 Molecular chaperone (D 98.2 2E-06 4.2E-11 80.8 5.3 55 78-132 48-103 (342)
102 KOG1789 Endocytosis protein RM 98.1 2.9E-06 6.2E-11 93.8 5.5 52 77-130 1281-1336(2235)
103 TIGR03835 termin_org_DnaJ term 97.9 1.4E-05 3.1E-10 87.1 6.8 71 77-147 2-72 (871)
104 TIGR02642 phage_xxxx uncharact 97.9 9.5E-06 2E-10 75.4 4.0 48 266-314 100-149 (186)
105 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.8 8.8E-06 1.9E-10 63.1 2.3 44 221-275 14-66 (66)
106 KOG0723 Molecular chaperone (D 97.8 3.7E-05 8.1E-10 64.0 5.3 52 78-132 57-108 (112)
107 COG1107 Archaea-specific RecJ- 97.6 3.1E-05 6.8E-10 81.6 2.9 68 223-291 3-80 (715)
108 PLN03165 chaperone protein dna 96.8 0.0011 2.4E-08 56.6 3.1 41 224-279 54-100 (111)
109 KOG2813 Predicted molecular ch 96.7 0.0014 3E-08 64.7 4.0 30 267-299 247-276 (406)
110 COG1107 Archaea-specific RecJ- 96.5 0.0022 4.7E-08 68.1 3.7 58 222-290 18-106 (715)
111 KOG3192 Mitochondrial J-type c 96.4 0.004 8.6E-08 55.6 4.1 67 74-140 5-79 (168)
112 TIGR02642 phage_xxxx uncharact 96.2 0.0035 7.5E-08 58.4 2.9 31 240-280 100-130 (186)
113 COG1076 DjlA DnaJ-domain-conta 95.9 0.0046 1E-07 57.3 2.3 53 77-129 113-173 (174)
114 COG1076 DjlA DnaJ-domain-conta 94.4 0.027 5.9E-07 52.1 2.7 63 78-140 2-72 (174)
115 KOG0431 Auxilin-like protein a 94.3 0.046 1E-06 58.1 4.4 28 86-113 397-424 (453)
116 KOG2813 Predicted molecular ch 93.9 0.026 5.5E-07 56.0 1.5 59 222-292 198-258 (406)
117 KOG0715 Molecular chaperone (D 93.5 0.1 2.2E-06 52.3 4.9 98 209-321 169-271 (288)
118 PF03656 Pam16: Pam16; InterP 91.3 0.45 9.8E-06 41.7 5.5 55 78-135 59-113 (127)
119 PF11833 DUF3353: Protein of u 80.9 3.4 7.4E-05 39.0 5.6 38 86-130 1-38 (194)
120 KOG2824 Glutaredoxin-related p 79.9 1.8 4E-05 42.5 3.5 46 223-278 230-275 (281)
121 KOG0724 Zuotin and related mol 79.6 1.7 3.7E-05 44.4 3.4 52 89-140 4-60 (335)
122 PF13446 RPT: A repeated domai 79.1 4.4 9.5E-05 30.6 4.7 44 78-131 6-49 (62)
123 KOG2824 Glutaredoxin-related p 78.3 2 4.3E-05 42.3 3.2 38 240-292 230-275 (281)
124 cd03031 GRX_GRX_like Glutaredo 74.9 3.5 7.6E-05 37.1 3.6 46 223-277 100-145 (147)
125 PRK14714 DNA polymerase II lar 71.0 2.9 6.3E-05 49.1 2.7 66 205-289 643-719 (1337)
126 COG5552 Uncharacterized conser 70.8 15 0.00033 28.9 5.7 47 75-121 1-47 (88)
127 TIGR00630 uvra excinuclease AB 70.5 2.6 5.7E-05 48.9 2.2 21 413-433 855-876 (924)
128 cd03031 GRX_GRX_like Glutaredo 69.0 4 8.6E-05 36.8 2.6 36 240-290 100-144 (147)
129 TIGR00310 ZPR1_znf ZPR1 zinc f 65.6 30 0.00065 32.6 7.8 75 241-315 2-100 (192)
130 PF10041 DUF2277: Uncharacteri 63.3 32 0.00068 27.3 6.2 47 75-121 1-47 (78)
131 smart00709 Zpr1 Duplicated dom 61.4 37 0.0008 31.0 7.4 21 295-315 80-100 (160)
132 PRK04023 DNA polymerase II lar 58.9 4.8 0.0001 46.3 1.4 64 205-289 609-673 (1121)
133 PRK00349 uvrA excinuclease ABC 58.5 8.8 0.00019 44.8 3.5 11 242-252 741-751 (943)
134 PF03833 PolC_DP2: DNA polymer 54.7 4.1 8.9E-05 46.1 0.0 50 222-291 655-704 (900)
135 PRK03564 formate dehydrogenase 54.5 13 0.00029 37.6 3.6 10 222-231 187-196 (309)
136 PRK00635 excinuclease ABC subu 54.3 7.4 0.00016 48.2 2.1 31 242-276 1610-1641(1809)
137 TIGR03655 anti_R_Lar restricti 53.4 20 0.00042 26.2 3.5 37 240-277 2-38 (53)
138 PHA02576 3 tail completion and 52.3 45 0.00098 30.9 6.4 55 402-463 62-119 (177)
139 PRK05978 hypothetical protein; 51.0 6.9 0.00015 35.3 0.8 25 241-272 35-59 (148)
140 TIGR00630 uvra excinuclease AB 50.7 7 0.00015 45.5 1.1 27 267-293 738-773 (924)
141 TIGR00340 zpr1_rel ZPR1-relate 49.5 50 0.0011 30.2 6.3 20 296-315 78-98 (163)
142 PF03589 Antiterm: Antitermina 49.4 4.5 9.7E-05 33.6 -0.6 36 241-277 7-44 (95)
143 PRK00349 uvrA excinuclease ABC 48.6 12 0.00026 43.7 2.5 28 267-294 740-776 (943)
144 PRK00564 hypA hydrogenase nick 47.4 54 0.0012 28.2 5.8 9 221-229 70-78 (117)
145 COG0178 UvrA Excinuclease ATPa 47.4 21 0.00046 40.6 4.0 32 241-276 732-764 (935)
146 PRK14051 negative regulator Gr 46.4 62 0.0014 27.4 5.7 71 327-397 48-119 (123)
147 PF07709 SRR: Seven Residue Re 42.9 14 0.00031 19.5 1.0 13 118-130 2-14 (14)
148 cd02639 R3H_RRM R3H domain of 42.4 39 0.00085 25.6 3.7 26 410-435 17-42 (60)
149 COG0178 UvrA Excinuclease ATPa 41.7 20 0.00044 40.8 2.8 33 266-300 731-772 (935)
150 PF03589 Antiterm: Antitermina 40.5 9.8 0.00021 31.6 0.1 29 223-251 6-44 (95)
151 TIGR01562 FdhE formate dehydro 39.8 30 0.00064 35.0 3.5 9 223-231 185-193 (305)
152 PF14687 DUF4460: Domain of un 39.3 55 0.0012 28.1 4.5 45 87-131 4-53 (112)
153 PF14353 CpXC: CpXC protein 39.0 16 0.00035 31.7 1.3 12 266-277 39-50 (128)
154 PF09538 FYDLN_acid: Protein o 38.5 16 0.00035 31.1 1.2 23 223-245 10-32 (108)
155 COG1198 PriA Primosomal protei 37.8 22 0.00048 40.2 2.4 51 221-288 434-484 (730)
156 PRK12380 hydrogenase nickel in 37.8 62 0.0013 27.7 4.7 10 221-230 69-78 (113)
157 PF12991 DUF3875: Domain of un 37.8 37 0.0008 25.1 2.7 24 403-426 26-51 (54)
158 PRK14559 putative protein seri 35.3 19 0.00042 40.2 1.5 48 223-287 2-49 (645)
159 PF13453 zf-TFIIB: Transcripti 34.0 28 0.00062 23.9 1.6 8 266-273 20-27 (41)
160 PF04246 RseC_MucC: Positive r 33.7 57 0.0012 28.5 4.0 22 295-316 42-63 (135)
161 PRK14873 primosome assembly pr 33.6 33 0.00072 38.5 3.0 51 221-289 382-432 (665)
162 PF07092 DUF1356: Protein of u 33.6 17 0.00037 35.3 0.6 10 405-414 202-211 (238)
163 PF08792 A2L_zn_ribbon: A2L zi 32.3 35 0.00076 22.6 1.8 12 240-251 4-15 (33)
164 PRK03681 hypA hydrogenase nick 31.8 84 0.0018 26.9 4.5 9 221-229 69-77 (114)
165 PF01155 HypA: Hydrogenase exp 31.8 67 0.0015 27.4 3.9 28 221-249 69-96 (113)
166 TIGR00100 hypA hydrogenase nic 31.1 1.2E+02 0.0026 26.0 5.4 8 222-229 70-77 (115)
167 PF12434 Malate_DH: Malate deh 30.4 54 0.0012 20.7 2.2 17 91-107 10-26 (28)
168 PF07295 DUF1451: Protein of u 30.2 47 0.001 29.9 2.8 13 266-278 131-143 (146)
169 PF07092 DUF1356: Protein of u 29.7 28 0.0006 33.9 1.3 14 240-253 39-52 (238)
170 PRK00635 excinuclease ABC subu 29.6 19 0.0004 44.9 0.2 27 267-293 1609-1644(1809)
171 TIGR02300 FYDLN_acid conserved 29.0 30 0.00065 30.3 1.3 25 222-246 9-33 (129)
172 PRK12336 translation initiatio 28.4 1.8E+02 0.004 27.5 6.6 13 266-278 120-132 (201)
173 PF08774 VRR_NUC: VRR-NUC doma 27.3 90 0.002 25.5 3.9 27 407-433 62-89 (100)
174 PF13719 zinc_ribbon_5: zinc-r 26.0 45 0.00098 22.5 1.5 7 266-272 26-32 (37)
175 PF12387 Peptidase_C74: Pestiv 25.9 32 0.00069 31.6 0.9 26 223-252 163-188 (200)
176 PF08273 Prim_Zn_Ribbon: Zinc- 25.5 45 0.00097 23.2 1.4 6 267-272 28-33 (40)
177 TIGR00595 priA primosomal prot 25.5 50 0.0011 35.8 2.6 52 221-289 212-263 (505)
178 COG5349 Uncharacterized protei 25.3 20 0.00043 31.1 -0.4 25 241-272 23-47 (126)
179 PF03367 zf-ZPR1: ZPR1 zinc-fi 24.2 1E+02 0.0023 28.0 4.0 33 240-272 2-37 (161)
180 cd06007 R3H_DEXH_helicase R3H 24.2 1.1E+02 0.0024 23.0 3.5 26 410-435 16-41 (59)
181 PF14205 Cys_rich_KTR: Cystein 23.4 1.1E+02 0.0023 22.8 3.1 11 281-291 30-40 (55)
182 KOG2724 Nuclear pore complex c 23.3 79 0.0017 33.2 3.3 84 328-412 370-455 (487)
183 PRK11032 hypothetical protein; 23.1 77 0.0017 29.0 2.9 16 93-108 3-18 (160)
184 PF04216 FdhE: Protein involve 22.6 38 0.00082 33.9 0.9 8 223-230 173-180 (290)
185 PF10080 DUF2318: Predicted me 22.5 42 0.00091 28.3 1.0 22 224-245 37-58 (102)
186 cd02641 R3H_Smubp-2_like R3H d 21.8 1.2E+02 0.0026 22.8 3.3 25 411-435 18-42 (60)
187 PRK05580 primosome assembly pr 21.4 55 0.0012 36.9 1.9 51 222-289 381-431 (679)
188 KOG0315 G-protein beta subunit 20.9 1E+02 0.0022 30.5 3.3 32 350-381 18-51 (311)
189 PRK03824 hypA hydrogenase nick 20.6 2.2E+02 0.0048 25.1 5.2 10 266-275 108-117 (135)
190 cd02640 R3H_NRF R3H domain of 20.5 1.4E+02 0.0031 22.5 3.4 25 411-435 18-42 (60)
191 smart00440 ZnF_C2C2 C2C2 Zinc 20.2 1.6E+02 0.0036 20.1 3.4 13 241-253 2-14 (40)
192 PF01096 TFIIS_C: Transcriptio 20.1 1.5E+02 0.0033 20.1 3.2 16 241-256 2-17 (39)
193 COG5435 Uncharacterized conser 20.0 1.8E+02 0.0038 26.2 4.4 33 403-435 108-140 (147)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-91 Score=697.92 Aligned_cols=347 Identities=47% Similarity=0.857 Sum_probs=317.2
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhcccccccccCccccc-CC
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GG 152 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~-~~ 152 (466)
+.+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|+|||||||||+||++||+||+++++++. ++
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg 81 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG 81 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence 5789999999999999999999999999999999999 789999999999999999999999999999999986322 22
Q ss_pred -CCCCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCc
Q 012301 153 -GSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (466)
Q Consensus 153 -~~~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~Gt 231 (466)
+.+++..++.|||++|||++ .+ ++.++..+.+|.|+.+.|+|||+|||+|+++++.+++.+.|+.|+|+
T Consensus 82 ~g~~~fgg~~~DIF~~~FgGg---~~-------~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~Gs 151 (371)
T COG0484 82 FGFGGFGGDFGDIFEDFFGGG---GG-------GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGS 151 (371)
T ss_pred CCcCCCCCCHHHHHHHhhcCC---Cc-------ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCC
Confidence 12223225678899998621 10 11223346789999999999999999999999999999999999999
Q ss_pred ccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEE
Q 012301 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (466)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i 311 (466)
|++.+....+|++|+|+|++...+++ |.|++.++|+.|+|+|++++++|.+|+|.|++.+.++++|+||+|+.+|++|
T Consensus 152 Gak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~i 229 (371)
T COG0484 152 GAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRI 229 (371)
T ss_pred CCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEE
Confidence 99999999999999999999887777 8888889999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEc
Q 012301 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA 391 (466)
Q Consensus 312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~ 391 (466)
++.|+|+++++++++|||||+|.|++|+.|.|+|+|||++++|++.+|+||++++|+||||+++|+||+++|+|++++|+
T Consensus 230 r~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~ 309 (371)
T COG0484 230 RLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLR 309 (371)
T ss_pred EEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEc
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 392 KKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 392 g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
|+|||..++ ..+|||||+|+|++|++|+.+|+++|++|++..
T Consensus 310 gkG~p~~~~-~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 310 GKGMPKLRS-GGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred CCCccccCC-CCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 999998765 457999999999999999999999999999876
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.9e-81 Score=639.35 Aligned_cols=345 Identities=36% Similarity=0.672 Sum_probs=302.5
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC--CC
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--GG 153 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~--~~ 153 (466)
.+|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||++|++||+||+++++.+.+ ++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~ 82 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence 4699999999999999999999999999999999988889999999999999999999999999999887653111 11
Q ss_pred CCCCC-----------CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeee
Q 012301 154 SSAYT-----------TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL 222 (466)
Q Consensus 154 ~~~~~-----------~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~ 222 (466)
.+++. .++.|+|+.||++ + . + +.....++.|+.+.|.|+|+|+|+|+++++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fgg---g-~-------~--~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~ 149 (372)
T PRK14296 83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGS---N-K-------S--DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLL 149 (372)
T ss_pred CCccccccccccccccccchhhhhhhcCC---C-c-------c--CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeee
Confidence 01110 0111334444431 0 0 0 01123578999999999999999999999999999
Q ss_pred eecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcC
Q 012301 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP 302 (466)
Q Consensus 223 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip 302 (466)
+.|+.|+|+|........+|+.|+|+|.++..++.++.++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||
T Consensus 150 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip 229 (372)
T PRK14296 150 TNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIP 229 (372)
T ss_pred eccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEEC
Confidence 99999999999988888999999999999888777765566668999999999999999999999999999999999999
Q ss_pred CCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccC-CcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCC
Q 012301 303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRD-GIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG 381 (466)
Q Consensus 303 ~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~-g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g 381 (466)
+|+++|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+ |+||++++.|+|+|||+|+++.|+||||+++|+||++
T Consensus 230 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~ 309 (372)
T PRK14296 230 KGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKS 309 (372)
T ss_pred CCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCc
Confidence 999999999999999998767889999999999999999995 8999999999999999999999999999988999999
Q ss_pred CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (466)
Q Consensus 382 ~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~ 433 (466)
++||++++|+|+|||...+++.+|||||+|+|.||+.|+++|+++|++|+++
T Consensus 310 t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~ 361 (372)
T PRK14296 310 INSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQ 361 (372)
T ss_pred cCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999999999999997655567899999999999999999999999999975
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.9e-79 Score=624.87 Aligned_cols=343 Identities=32% Similarity=0.605 Sum_probs=297.5
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~ 154 (466)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||++|++||+||+++++...+ +.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~-~~ 80 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA-SQ 80 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC-Cc
Confidence 579999999999999999999999999999999997 4678999999999999999999999999999887653211 11
Q ss_pred CCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccc
Q 012301 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (466)
Q Consensus 155 ~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~ 234 (466)
..| .++|+.|++||+..||+ ++. +. .+....++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus 81 ~~~-~~~f~~~~~~F~~~fg~-g~~-----~~-~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~ 152 (369)
T PRK14288 81 SDF-SDFFEDLGSFFEDAFGF-GAR-----GS-KRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAK 152 (369)
T ss_pred ccc-ccchhhHHHHHHhhcCC-CCc-----cc-CcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccC
Confidence 112 23344344455433221 000 00 11123468999999999999999999999999999999999999998
Q ss_pred cCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEc
Q 012301 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (466)
Q Consensus 235 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (466)
.. ...+|+.|+|+|.+.... |++++.++|+.|.|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|++|+|+
T Consensus 153 ~~-~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~ 227 (369)
T PRK14288 153 DK-ALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLK 227 (369)
T ss_pred CC-CCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEc
Confidence 75 568999999999876543 6777778999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCCCccCcEEEEccC
Q 012301 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKK 393 (466)
Q Consensus 315 g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~~~~i~g~ 393 (466)
|+|++.+ ++.+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+||||+ ++|+||+++++|++++|+|+
T Consensus 228 g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~ 306 (369)
T PRK14288 228 NKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNE 306 (369)
T ss_pred cCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCC
Confidence 9999966 578999999999999999999999999999999999999999999999997 68999999999999999999
Q ss_pred CCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 394 GAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 394 GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
|||..+. ..+|||||+|+|.||+.|+++|+++|++|++..
T Consensus 307 G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 346 (369)
T PRK14288 307 GVKHPES-SYRGSLIVELQVIYPKSLNKEQQELLEKLHASF 346 (369)
T ss_pred CCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 9997653 458999999999999999999999999999753
No 4
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-78 Score=624.65 Aligned_cols=351 Identities=42% Similarity=0.823 Sum_probs=309.3
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccc-cCC
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST-VGG 152 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~-~~~ 152 (466)
+..|||+||||+++||.+|||+|||+||++||||+|+. +.++++|++|++||+||+|+.+|++||+||+++++.+ .+.
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ 82 (386)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence 35799999999999999999999999999999999974 5788999999999999999999999999998877532 110
Q ss_pred C--C-CCC-----C---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeee
Q 012301 153 G--S-SAY-----T---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSH 221 (466)
Q Consensus 153 ~--~-~~~-----~---~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~ 221 (466)
+ . +++ . .++.++|++||+..+|+.+ ........++.|+.+.|.|+|+|+|+|+++++.+++
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~--------~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r 154 (386)
T PRK14277 83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGR--------RRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVER 154 (386)
T ss_pred CCcCCCCccccCccccccchhHHHHHhhcccccCCC--------cCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEe
Confidence 0 0 111 1 1122567777764332210 000112347899999999999999999999999999
Q ss_pred eeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEc
Q 012301 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKV 301 (466)
Q Consensus 222 ~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~I 301 (466)
.+.|+.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.|
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I 234 (386)
T PRK14277 155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNI 234 (386)
T ss_pred eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEec
Confidence 99999999999988888899999999999999899999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCC
Q 012301 302 PPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG 381 (466)
Q Consensus 302 p~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g 381 (466)
|+|+++|++|+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+++|+||++
T Consensus 235 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g 314 (386)
T PRK14277 235 PAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEG 314 (386)
T ss_pred CCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCC
Confidence 99999999999999999976667789999999999999999999999999999999999999999999999988999999
Q ss_pred CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 382 ~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
+++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+++.
T Consensus 315 ~~~g~~~ri~g~G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~~ 366 (386)
T PRK14277 315 TQTGTKFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEKLS 366 (386)
T ss_pred CCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999998664 368999999999999999999999999999754
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-78 Score=620.07 Aligned_cols=346 Identities=45% Similarity=0.808 Sum_probs=308.8
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCC--
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG-- 153 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~-- 153 (466)
.+|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||+++++.+.++.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~ 83 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI 83 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence 469999999999999999999999999999999998778899999999999999999999999999988765321110
Q ss_pred --CCCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCc
Q 012301 154 --SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (466)
Q Consensus 154 --~~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~Gt 231 (466)
..++ .++.|+|+.||+++ + + .. ...+.++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus 84 ~~~~~~-~~~~d~f~~~Fgg~--~--~-----~~---~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~ 150 (377)
T PRK14298 84 FRGADF-GGFGDIFEMFFGGG--G--R-----RG---RMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGT 150 (377)
T ss_pred cccCCc-CcchhhhHhhhcCC--C--c-----cC---CCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCC
Confidence 0011 12336677777521 0 0 00 1123578999999999999999999999999999999999999
Q ss_pred ccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEE
Q 012301 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (466)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i 311 (466)
|...+....+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus 151 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i 230 (377)
T PRK14298 151 GAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRL 230 (377)
T ss_pred cccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEE
Confidence 99988888999999999999988888888888889999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEc
Q 012301 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA 391 (466)
Q Consensus 312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~ 391 (466)
+|+|+|++.+.++.+|||||+|.+++|+.|+|+|+||++++.|+|.|||+|+++.|+||||++.|+||+++++|++++|+
T Consensus 231 ~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~ 310 (377)
T PRK14298 231 KLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLK 310 (377)
T ss_pred EEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEEC
Confidence 99999999776788999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301 392 KKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 392 g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
|+|||..+. ..+|||||+|+|.||+.|+++++++|++|+++.+
T Consensus 311 g~G~p~~~~-~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~~~ 353 (377)
T PRK14298 311 DKGMPRLHG-HGKGDQLVKVIVKTPTKLTQEQKELLREFDELSN 353 (377)
T ss_pred CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 999997654 3689999999999999999999999999997643
No 6
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4e-78 Score=619.16 Aligned_cols=346 Identities=44% Similarity=0.845 Sum_probs=309.5
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC-CC
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS 154 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-~~ 154 (466)
..|||+||||+++||.+|||+|||+||++||||+|++++++++|++|++||++|+||.+|++||+||++++..+.++ +.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA 82 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence 36999999999999999999999999999999999877889999999999999999999999999999876532211 11
Q ss_pred CCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccc
Q 012301 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (466)
Q Consensus 155 ~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~ 234 (466)
++| .++.|+|+.||+++ + +. +. .....++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus 83 ~~f-~~~~d~f~~~fgg~--~--~~-----~~--~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~ 150 (371)
T PRK14287 83 GDF-GGFSDIFDMFFGGG--G--GR-----RN--PNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAK 150 (371)
T ss_pred ccc-cchHHHHHhhhccc--c--CC-----CC--CCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccC
Confidence 112 12336778887631 1 00 00 0113478999999999999999999999999999999999999998
Q ss_pred cCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEc
Q 012301 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (466)
Q Consensus 235 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (466)
......+|+.|+|+|.+...+++++|++++..+|+.|.|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|++|+|+
T Consensus 151 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 230 (371)
T PRK14287 151 PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS 230 (371)
T ss_pred CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEc
Confidence 88878899999999999988899999999989999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEccCC
Q 012301 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG 394 (466)
Q Consensus 315 g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g~G 394 (466)
|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+|+||+++|+||+++++|++++|+|+|
T Consensus 231 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G 310 (371)
T PRK14287 231 GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKG 310 (371)
T ss_pred cCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCC
Confidence 99999876678899999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 395 APKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 395 mP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
||..++ ..+|||||+|+|.+|+.|+.+|+++|++|+++.
T Consensus 311 ~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~ 349 (371)
T PRK14287 311 VPNVHG-RGQGDQHVQVRVVTPKNLTEKEKELMREFAGMS 349 (371)
T ss_pred ccCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 997664 358999999999999999999999999999764
No 7
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.5e-78 Score=619.54 Aligned_cols=346 Identities=46% Similarity=0.861 Sum_probs=309.2
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC--
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS-- 154 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~-- 154 (466)
.|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||+++++.+.+++.
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~ 83 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFG 83 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCC
Confidence 699999999999999999999999999999999988889999999999999999999999999999987754321110
Q ss_pred -CCCC--CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCc
Q 012301 155 -SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (466)
Q Consensus 155 -~~~~--~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~Gt 231 (466)
..|. .++.|+|+.||+++ + . .. ......++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus 84 ~~~~~~~~~~~d~f~~~fgg~--~--~------~~-~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~ 152 (376)
T PRK14280 84 GGDFGGGFGFEDIFSSFFGGG--G--R------RR-DPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGS 152 (376)
T ss_pred CCCccccccchhhHHHHhCCc--c--c------cC-cccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCc
Confidence 0111 13346777777521 1 0 00 01123478999999999999999999999999999999999999
Q ss_pred ccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEE
Q 012301 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (466)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i 311 (466)
|........+|+.|+|+|.+....++++|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus 153 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i 232 (376)
T PRK14280 153 GAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQI 232 (376)
T ss_pred ccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEE
Confidence 99888888999999999999888889999999889999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEc
Q 012301 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA 391 (466)
Q Consensus 312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~ 391 (466)
+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||++.|+||+++++|++++|+
T Consensus 233 ~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i~ 312 (376)
T PRK14280 233 RVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRLK 312 (376)
T ss_pred EEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEEc
Confidence 99999999876778899999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 392 KKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 392 g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+++.
T Consensus 313 g~G~p~~~~-~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~~ 354 (376)
T PRK14280 313 GKGVPNVRG-YGQGDQYVVVRVVTPTKLTDRQKELLREFAELS 354 (376)
T ss_pred CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999998654 368999999999999999999999999999754
No 8
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.7e-78 Score=620.86 Aligned_cols=347 Identities=44% Similarity=0.808 Sum_probs=309.8
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC---
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG--- 152 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~--- 152 (466)
..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||+++++.+.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 46999999999999999999999999999999999888899999999999999999999999999999887642211
Q ss_pred CCCCCC-----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeeccc
Q 012301 153 GSSAYT-----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (466)
Q Consensus 153 ~~~~~~-----~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~ 227 (466)
+.++|. .++.|+|+.||+++ + +. . ......++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~--~--~~-----~--~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~ 151 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGG--G--AR-----R--NPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHT 151 (380)
T ss_pred CCCCccccccccchhhHHHHHhCcc--c--cc-----c--CcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCC
Confidence 111121 12336677777521 1 00 0 0112347899999999999999999999999999999999
Q ss_pred ccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcC
Q 012301 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (466)
Q Consensus 228 C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~ 307 (466)
|+|+|........+|+.|+|+|.+....++++|++++..+|+.|+|.|+++.+.|..|.|.|.+.+.++++|.||+|+++
T Consensus 152 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~ 231 (380)
T PRK14276 152 CNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVET 231 (380)
T ss_pred CcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccC
Confidence 99999998888889999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcE
Q 012301 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDV 387 (466)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~ 387 (466)
|++|+|+|+|++.+.+..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|++++|+|+||+++|+||+++++|++
T Consensus 232 G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~ 311 (380)
T PRK14276 232 GQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKK 311 (380)
T ss_pred CcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCE
Confidence 99999999999987667789999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 388 LVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 388 ~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|++..
T Consensus 312 ~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~~ 357 (380)
T PRK14276 312 FRLRGKGAPKLRG-GGNGDQHVTVNIVTPTKLNDAQKEALKAFAKAS 357 (380)
T ss_pred EEECCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 9999999998654 357999999999999999999999999999753
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.4e-78 Score=616.59 Aligned_cols=348 Identities=45% Similarity=0.828 Sum_probs=303.9
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC-C
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G 153 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-~ 153 (466)
..|||+||||+++||.+|||+|||+||++||||+|+. ++++++|++|++||+||+||.+|++||+||+++++.+.++ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 3699999999999999999999999999999999974 6788999999999999999999999999999877532111 1
Q ss_pred CCC---CC---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeeccc
Q 012301 154 SSA---YT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (466)
Q Consensus 154 ~~~---~~---~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~ 227 (466)
.++ +. .++.|+|+.||+++.++.+ ..+ +.....++.|+++.|.|+|+|+|+|+++++.+.+.+.|++
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~-----~~~--~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~ 155 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGS-----GGG--RRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVD 155 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCCC-----ccc--ccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCC
Confidence 111 11 2333678888863211100 000 1112357899999999999999999999999999999999
Q ss_pred ccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcC
Q 012301 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (466)
Q Consensus 228 C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~ 307 (466)
|+|+|........+|+.|+|+|.++... |++++.++|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++
T Consensus 156 C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~ 231 (372)
T PRK14286 156 CNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVET 231 (372)
T ss_pred CcCCCcCCCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCC
Confidence 9999998887788999999999886643 778877999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCCCccCc
Q 012301 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGD 386 (466)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~ 386 (466)
|++|+|+|+|++.+++..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+ ++|+||+++++|+
T Consensus 232 G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~ 311 (372)
T PRK14286 232 GSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQ 311 (372)
T ss_pred CCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCc
Confidence 999999999999877677899999999999999999999999999999999999999999999997 6899999999999
Q ss_pred EEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301 387 VLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 387 ~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
+++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+++..
T Consensus 312 ~~ri~G~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~~ 359 (372)
T PRK14286 312 VFRLKGHGMPYLGA-YGKGDQHVIVKIEIPKKITRRQRELIEEFARESG 359 (372)
T ss_pred EEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 99999999998654 3689999999999999999999999999998643
No 10
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-77 Score=616.18 Aligned_cols=347 Identities=43% Similarity=0.755 Sum_probs=306.3
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCccccc-CCCC
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GGGS 154 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~-~~~~ 154 (466)
..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++....+. +++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~ 81 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF 81 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence 479999999999999999999999999999999998777899999999999999999999999999976332110 0010
Q ss_pred C-CCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCccc
Q 012301 155 S-AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA 233 (466)
Q Consensus 155 ~-~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~ 233 (466)
+ +| .++.|+|+.||+++ +. + ........++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.
T Consensus 82 ~~~f-~~~~d~f~~ffgg~--g~-~-------~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~ 150 (378)
T PRK14278 82 GGGF-GGLGDVFEAFFGGG--AA-S-------RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGT 150 (378)
T ss_pred CcCc-CchhHHHHHHhCCC--CC-C-------CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccC
Confidence 1 11 12346788887631 10 0 000112357899999999999999999999999999999999999999
Q ss_pred ccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEE
Q 012301 234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313 (466)
Q Consensus 234 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l 313 (466)
.......+|+.|+|+|.+...+++.+|++++.++|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||||+++|++|+|
T Consensus 151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 230 (378)
T PRK14278 151 AGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRL 230 (378)
T ss_pred CCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEE
Confidence 98888899999999999988888889999988999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEecc-CCeEEEEeCCCCccCcEEEEcc
Q 012301 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV-EGISELQVPPGTQPGDVLVLAK 392 (466)
Q Consensus 314 ~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tl-dG~~~v~i~~g~~~g~~~~i~g 392 (466)
+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+|| ++.+.|+||+++++|++++|+|
T Consensus 231 ~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g 310 (378)
T PRK14278 231 AAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRG 310 (378)
T ss_pred ccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECC
Confidence 999999887778899999999999999999999999999999999999999999999 5567899999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 393 KGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 393 ~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.+.
T Consensus 311 ~G~p~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~~ 351 (378)
T PRK14278 311 RGMPHLRS-GGRGDLHAHVEVVVPTRLDHEDIELLRELKALR 351 (378)
T ss_pred CCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Confidence 99997653 468999999999999999999999999999763
No 11
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=1.1e-77 Score=621.51 Aligned_cols=334 Identities=33% Similarity=0.611 Sum_probs=296.2
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~ 154 (466)
...|||+||||+++||.+|||+|||+||++||||+|++ .++|++|++||+||+||.+|++||+||++++..+.
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~---- 98 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE---- 98 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC----
Confidence 35799999999999999999999999999999999853 58999999999999999999999999988765221
Q ss_pred CCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccc
Q 012301 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (466)
Q Consensus 155 ~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~ 234 (466)
+ ..++.++|+.||+++ + + +....++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus 99 ~--~~d~~d~f~~~Fggg--~---------~---~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~ 162 (421)
T PTZ00037 99 Q--PADASDLFDLIFGGG--R---------K---PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGP 162 (421)
T ss_pred C--CcchhhhHHHhhccc--c---------c---cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCC
Confidence 1 124567788888631 0 0 0113468999999999999999999999999999999999999986
Q ss_pred cCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe--eeeeeccCceEEEeeeEEEEEcCCCCcCCcEEE
Q 012301 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (466)
Q Consensus 235 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~--~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~ 312 (466)
.. ...+|+.|+|+|.++...++++.++++..+|+.|+|+|+++. +.|..|+|.|++.+.++++|.||+|+.+|++|+
T Consensus 163 ~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~ 241 (421)
T PTZ00037 163 KD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKIT 241 (421)
T ss_pred CC-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEE
Confidence 44 568999999999988777665523345589999999999986 799999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCC--CccCcEEE
Q 012301 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLV 389 (466)
Q Consensus 313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g--~~~g~~~~ 389 (466)
|+|+|++.+ ++.+|||||+|.+++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+ ++|+||++ ++||++++
T Consensus 242 ~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~ 320 (421)
T PTZ00037 242 FHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKV 320 (421)
T ss_pred EecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEE
Confidence 999999976 578999999999999999999999999999999999999999999999997 68999988 99999999
Q ss_pred EccCCCCCCCCCCCCCcEEEEEEEECC--CCCCHHHHHHHHHHHhh
Q 012301 390 LAKKGAPKLNKPSIRGDHLFTVKVTIP--NRISAKERELLEELASL 433 (466)
Q Consensus 390 i~g~GmP~~~~~~~~GDL~I~~~V~~P--~~ls~~~~~ll~~l~~~ 433 (466)
|+|+|||..++++.+|||||+|+|.|| +.|+++|+++|++|+..
T Consensus 321 I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~ 366 (421)
T PTZ00037 321 INNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQ 366 (421)
T ss_pred eCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccC
Confidence 999999987765679999999999999 99999999999999964
No 12
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-77 Score=616.11 Aligned_cols=350 Identities=44% Similarity=0.827 Sum_probs=310.0
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC---
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--- 151 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~--- 151 (466)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|++||+||+++++.+.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 3699999999999999999999999999999999974 568899999999999999999999999999987753211
Q ss_pred CCCCCCC----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeeccc
Q 012301 152 GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (466)
Q Consensus 152 ~~~~~~~----~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~ 227 (466)
++.+++. .++.|+|++||++++++. +. +.....++.|+++.|.|||+|+|+|+++++.+.+.+.|+.
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~~--------~~-~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 153 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGGFGSS--------SR-RRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCET 153 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccCcccc--------cc-ccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCC
Confidence 0111111 123467888886321110 00 1112357899999999999999999999999999999999
Q ss_pred ccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcC
Q 012301 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (466)
Q Consensus 228 C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~ 307 (466)
|+|+|...+....+|+.|+|+|.++..+++++|++++..+|+.|+|+|.++.+.|..|+|.|.+.+.++++|.||+|+++
T Consensus 154 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~ 233 (380)
T PRK14297 154 CNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDT 233 (380)
T ss_pred cccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCC
Confidence 99999998888899999999999998888999999988999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcE
Q 012301 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDV 387 (466)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~ 387 (466)
|++|+|+|+|++.+.+..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|++++|+|+||+++|+||+++++|++
T Consensus 234 G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~ 313 (380)
T PRK14297 234 GNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTV 313 (380)
T ss_pred CcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCE
Confidence 99999999999977677889999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301 388 LVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 388 ~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.+..
T Consensus 314 ~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~~ 360 (380)
T PRK14297 314 FRLKGKGVPRVNS-TGRGNQYVTVIVDIPKKLNSKQKEALTMFMEASG 360 (380)
T ss_pred EEEcCCCcCCCCC-CCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 9999999997653 4689999999999999999999999999998753
No 13
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-77 Score=617.20 Aligned_cols=353 Identities=37% Similarity=0.692 Sum_probs=297.3
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC--
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-- 151 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~-- 151 (466)
+.+|||+||||+++|+.+|||+|||+||++||||+|+ ++.+.++|++|++||+||+||++|++||+||+++...+..
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~ 86 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR 86 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence 4579999999999999999999999999999999997 4578899999999999999999999999999753221110
Q ss_pred -----CCCCCCCCC----CcCccccccCCC----CCCC----CCCCCCCcccccccccccCCceeeeEeeecccccccee
Q 012301 152 -----GGSSAYTTN----PFDLFETFFGPS----MGGF----PGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAE 214 (466)
Q Consensus 152 -----~~~~~~~~~----~~d~f~~fFg~~----~gg~----~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~ 214 (466)
++.++|..+ .++ |++||+.. .++| +++++.+.+..+.....++.|+.+.|.|+|+|+|+|++
T Consensus 87 ~~~~~~~~~g~~~~~~~~~~d-~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~ 165 (392)
T PRK14279 87 RFDGGGGFGGFGTGGDGAEFN-LNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVT 165 (392)
T ss_pred cccCCCCCCCccccccccCcC-hhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeE
Confidence 000111100 111 23333211 0111 11110000001112235789999999999999999999
Q ss_pred eeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEee
Q 012301 215 KEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLK 294 (466)
Q Consensus 215 ~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~ 294 (466)
+++.+.+.+.|+.|+|+|........+|+.|+|+|.++... |++++.++|+.|+|+|+++.+.|..|.|.|.+.+.
T Consensus 166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~ 241 (392)
T PRK14279 166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRT 241 (392)
T ss_pred EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEe
Confidence 99999999999999999999888889999999999887643 66777799999999999999999999999999999
Q ss_pred eEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeE
Q 012301 295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS 374 (466)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~ 374 (466)
++++|.||+|+++|++|+|+|+|++.+++..+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+|+||++
T Consensus 242 ~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i 321 (392)
T PRK14279 242 RTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPV 321 (392)
T ss_pred eeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceE
Confidence 99999999999999999999999998877788999999999999999999999999999999999999999999999998
Q ss_pred EEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 375 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 375 ~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
+|+||+++++|++++|+|+|||.. .+.+|||||+|+|.||+.|+++|+++|++|+.+.
T Consensus 322 ~v~Ip~g~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~~ 379 (392)
T PRK14279 322 GVKVPAGTADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEAE 379 (392)
T ss_pred EEEECCCCCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999999963 3468999999999999999999999999999864
No 14
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-76 Score=611.70 Aligned_cols=356 Identities=42% Similarity=0.759 Sum_probs=305.5
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC-CC
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG 153 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~-~~ 153 (466)
..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||++|+|+.+|++||+||+++++.... ++
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 4699999999999999999999999999999999974 567899999999999999999999999999987753211 01
Q ss_pred CCCCC---C---CCcCccccccCCCCCC-------CCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeee
Q 012301 154 SSAYT---T---NPFDLFETFFGPSMGG-------FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELS 220 (466)
Q Consensus 154 ~~~~~---~---~~~d~f~~fFg~~~gg-------~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~ 220 (466)
..+|. . +.|..|++||+++.+. |.++.+.+....+.....++.|+++.|.|+|+|+|+|+++++.++
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~ 161 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence 11111 1 2223345778642110 000000000000111224689999999999999999999999999
Q ss_pred eeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEE
Q 012301 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK 300 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~ 300 (466)
+.+.|+.|+|+|.... ...+|+.|+|.|.+....++.+|++++..+|+.|+|.|+++.+.|..|.|.|.+.+.++++|+
T Consensus 162 r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~ 240 (397)
T PRK14281 162 KQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVT 240 (397)
T ss_pred eeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEe
Confidence 9999999999999876 578999999999998888899999998899999999999999999999999999999999999
Q ss_pred cCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCC
Q 012301 301 VPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPP 380 (466)
Q Consensus 301 Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~ 380 (466)
||+|+++|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+||||++.|+||+
T Consensus 241 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~ 320 (397)
T PRK14281 241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPA 320 (397)
T ss_pred cCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCC
Confidence 99999999999999999998777789999999999999999999999999999999999999999999999998899999
Q ss_pred CCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301 381 GTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (466)
Q Consensus 381 g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~ 433 (466)
++++|++++|+|+|||..+. +.+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 321 g~~~G~~~ri~g~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 372 (397)
T PRK14281 321 GTQPETMLRIPGKGIGHLRG-SGRGDQYVRVNVFVPKEVSHQDKELLKELKKS 372 (397)
T ss_pred ccCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 99999999999999997654 46899999999999999999999999999975
No 15
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.4e-76 Score=603.72 Aligned_cols=349 Identities=44% Similarity=0.807 Sum_probs=305.7
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC--
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-- 151 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~-- 151 (466)
..|||+||||+++||.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|++||+||.+++.....
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 4699999999999999999999999999999999874 467899999999999999999999999999877642110
Q ss_pred CCCCCCCCC-------Cc--CccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeee
Q 012301 152 GGSSAYTTN-------PF--DLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL 222 (466)
Q Consensus 152 ~~~~~~~~~-------~~--d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~ 222 (466)
++.+++..+ +| |+|+.||+++ ++. ...+....++.|+.+.|.|||+|+|+|+++++.+++.
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~----~~~------~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~ 152 (369)
T PRK14282 83 ESGGGFFEDIFKDFENIFNRDIFDIFFGER----RTQ------EEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRY 152 (369)
T ss_pred CCCCcccccccccccccccchhhhHhhccc----CCc------ccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeec
Confidence 011111111 11 4455555421 000 0011123578999999999999999999999999999
Q ss_pred eecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcC
Q 012301 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP 302 (466)
Q Consensus 223 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip 302 (466)
+.|+.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++.+.|..|+|.|++.+.++++|.||
T Consensus 153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip 232 (369)
T PRK14282 153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIP 232 (369)
T ss_pred ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeC
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCC
Q 012301 303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG 381 (466)
Q Consensus 303 ~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g 381 (466)
+|+.+|++|+|+|+|++.+.++.+|||||+|.+++|+.|+|+|+||++++.|+|.||++|++++|+|+||+ ++|+||++
T Consensus 233 ~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g 312 (369)
T PRK14282 233 AGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG 312 (369)
T ss_pred CCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC
Confidence 99999999999999999877788999999999999999999999999999999999999999999999997 68999999
Q ss_pred CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 382 ~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
+++|++++|+|+|||..+. +.+|||||+|+|.+|+.|+.+++++|++|+++..
T Consensus 313 ~~~g~~iri~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~~ 365 (369)
T PRK14282 313 TQPETVFRLKGKGLPNMRY-GRRGDLIVNVHVEIPKRLSREERKLLKELAKKRG 365 (369)
T ss_pred cCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999997543 4689999999999999999999999999997643
No 16
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-76 Score=604.90 Aligned_cols=345 Identities=33% Similarity=0.672 Sum_probs=302.3
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC-C
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G 153 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-~ 153 (466)
..|||++|||+++||.+|||+|||+||++||||+|+. +.+.++|++|++||+||+|+.+|+.||+||++++..+.+. +
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 4799999999999999999999999999999999974 5688999999999999999999999999998876532110 1
Q ss_pred C-CCCC------CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecc
Q 012301 154 S-SAYT------TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCE 226 (466)
Q Consensus 154 ~-~~~~------~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~ 226 (466)
. +++. .++.|+|+.||++.. + +. +.....++.|+.+.|.|||+|+|+|+++++.+++.+.|.
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~----~----~~---~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~ 150 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNR----G----QD---KNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCE 150 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCc----C----CC---CCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCC
Confidence 0 1111 122355666665210 0 00 011234789999999999999999999999999999999
Q ss_pred cccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCc
Q 012301 227 VCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS 306 (466)
Q Consensus 227 ~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~ 306 (466)
.|+|+|...+.....|+.|+|+|.++. .+|++++..+|+.|.|.|+++.+.|..|+|.|.+.+.++++|.||+|++
T Consensus 151 ~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 226 (365)
T PRK14285 151 SCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGID 226 (365)
T ss_pred CCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCC
Confidence 999999998888899999999998765 4588877799999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCCCccC
Q 012301 307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPG 385 (466)
Q Consensus 307 ~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g 385 (466)
+|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+||||+ ++|+||+++++|
T Consensus 227 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g 306 (365)
T PRK14285 227 DNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTEND 306 (365)
T ss_pred CCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCC
Confidence 9999999999999887777899999999999999999999999999999999999999999999996 689999999999
Q ss_pred cEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcCC
Q 012301 386 DVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNT 436 (466)
Q Consensus 386 ~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~~ 436 (466)
++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+++.+.
T Consensus 307 ~~irl~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~~ 356 (365)
T PRK14285 307 EQIIIKNEGMPILHT-EKFGNLILIIKIKTPKNLNSNAIKLLENLSKELKD 356 (365)
T ss_pred cEEEECCCCccCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 999999999997664 35799999999999999999999999999988764
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-76 Score=604.95 Aligned_cols=346 Identities=44% Similarity=0.788 Sum_probs=300.9
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~ 154 (466)
..|||+||||+++||.+|||+|||+||++||||+++. ++++++|++|++||+||+||.+|+.||+||+++++.+. +.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~--~~ 80 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNG--GF 80 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCC--CC
Confidence 4699999999999999999999999999999999974 56788999999999999999999999999998775321 11
Q ss_pred CCCC--CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcc
Q 012301 155 SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG 232 (466)
Q Consensus 155 ~~~~--~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG 232 (466)
++|. .++|+.|++||+..||+ ++.+ + .+.....++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus 81 ~g~~~~~~~~~~f~d~f~~~fg~-g~~~----~-~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G 154 (373)
T PRK14301 81 GGFSSAEDIFSHFSDIFGDLFGF-SGGG----S-RRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG 154 (373)
T ss_pred CCcccccccccchHHHHHHHhhc-cCcc----c-ccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc
Confidence 1221 12233334444432221 0100 0 0111235789999999999999999999999999999999999999
Q ss_pred cccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEE
Q 012301 233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (466)
Q Consensus 233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~ 312 (466)
........+|+.|+|+|.+... .|++++..+|+.|+|+|+++.+.|..|+|.|++.+.++++|.||+|+++|++|+
T Consensus 155 ~~~~~~~~~C~~C~G~G~v~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 230 (373)
T PRK14301 155 AAPGTSPETCRHCGGSGQVRQS----QGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR 230 (373)
T ss_pred cCCCCCCcccCCccCeeEEEEE----eeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEE
Confidence 9988888899999999988653 377888899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEcc
Q 012301 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAK 392 (466)
Q Consensus 313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g 392 (466)
|+|+|++.+.++.+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+||||+++|+||+++++|++++|+|
T Consensus 231 ~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g 310 (373)
T PRK14301 231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRG 310 (373)
T ss_pred EeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcC
Confidence 99999998767789999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 393 KGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 393 ~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.+.
T Consensus 311 ~G~p~~~~-~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~~ 351 (373)
T PRK14301 311 KGLPYLGS-SQKGDLLVEVSVVTPTKLTKRQEELLREFEALE 351 (373)
T ss_pred CCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 99998654 468999999999999999999999999999764
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-75 Score=602.99 Aligned_cols=354 Identities=42% Similarity=0.745 Sum_probs=299.0
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhccccc----ccccCcccc
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQ----YGEAGVKST 149 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~----~g~~~~~~~ 149 (466)
+..|||+||||+++||.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|++||+ ||++++..+
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 46799999999999999999999999999999999974 5688999999999999999999999999 998877532
Q ss_pred cC-CCCCCCCCCCcCccccccCCC-CCCCC----CCCCCCccc-ccccccccCCceeeeEeeeccccccceeeeEeeeee
Q 012301 150 VG-GGSSAYTTNPFDLFETFFGPS-MGGFP----GMNQTGFRT-RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL 222 (466)
Q Consensus 150 ~~-~~~~~~~~~~~d~f~~fFg~~-~gg~~----~~~~~~f~~-~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~ 222 (466)
.+ ++.++|..++.++|..+++.+ +++++ .+++..|+. .+.....++.|+.+.|.|+|+|+|+|++++|.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~ 166 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ 166 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence 11 111122223333443221100 00000 000000110 011123578999999999999999999999999999
Q ss_pred eecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcC
Q 012301 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP 302 (466)
Q Consensus 223 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip 302 (466)
+.|++|+|+|........+|+.|+|+|.++... |+|++..+|+.|+|+|+++.+.|..|.|.|++.+.++++|.||
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip 242 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIP 242 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeC
Confidence 999999999999888889999999999987643 5667778999999999999999999999999999999999999
Q ss_pred CCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCC-eEEEEeCCC
Q 012301 303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPG 381 (466)
Q Consensus 303 ~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG-~~~v~i~~g 381 (466)
+|+++|++|+|+|+|++.+.+..+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+|+|| .++|+||++
T Consensus 243 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g 322 (389)
T PRK14295 243 AGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPG 322 (389)
T ss_pred CCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCc
Confidence 9999999999999999977777889999999999999999999999999999999999999999999999 478999999
Q ss_pred CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 382 ~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
+++|++++|+|+|||..+ +.+|||||+|+|.||+.|+++|+++|++|++..
T Consensus 323 ~~~g~~iri~G~G~p~~~--~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~~ 373 (389)
T PRK14295 323 TPNGRVLRVRGKGAVRKD--GTRGDLLVTVEVAVPKDLSGKAREALEAFREAT 373 (389)
T ss_pred cCCCcEEEECCCCcCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999743 468999999999999999999999999999754
No 19
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-75 Score=600.04 Aligned_cols=346 Identities=49% Similarity=0.877 Sum_probs=302.6
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~ 154 (466)
..|||+||||+++||.+|||+|||+||++||||+++. +.++++|++|++||+||+||.+|+.||+||+++++.+..++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~ 82 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF 82 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCc
Confidence 4699999999999999999999999999999999974 578899999999999999999999999999988753211111
Q ss_pred CCCC---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCc
Q 012301 155 SAYT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (466)
Q Consensus 155 ~~~~---~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~Gt 231 (466)
+++. .++.|+|++||+. ++.++ ........++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~--g~~~~-------~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~ 153 (366)
T PRK14294 83 SGFDDIFSSFGDIFEDFFGF--GGGRR-------GRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGS 153 (366)
T ss_pred CccccchhhhhhhHHHhhcc--CCCcC-------CcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCc
Confidence 1221 1223566667651 11100 0001123578999999999999999999999999999999999999
Q ss_pred ccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEE
Q 012301 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (466)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i 311 (466)
|........+|+.|+|+|.++.. .|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus 154 G~~~~~~~~~C~~C~G~G~~~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 229 (366)
T PRK14294 154 GCEPGTSPTTCPQCGGSGQVTQS----QGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRL 229 (366)
T ss_pred cccCCCCcccCCCcCCeEEEEEE----eeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEE
Confidence 99888888999999999988653 37787779999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEc
Q 012301 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA 391 (466)
Q Consensus 312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~ 391 (466)
+|+|+|++.+.++.+|||||+|.+++|+.|+|+|+||++++.|+|.|||+|++++|+||||+++|+||+++++|++++|+
T Consensus 230 ~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~ 309 (366)
T PRK14294 230 RLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFK 309 (366)
T ss_pred EEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEEC
Confidence 99999999777788999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301 392 KKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 392 g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
|+|||..+. ..+|||||+|+|.+|+.|+.+|+++|++|+++++
T Consensus 310 G~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~~ 352 (366)
T PRK14294 310 GKGIPSLRG-GGRGDQIIEVEVKVPTRLTKKQEELLTEFARLES 352 (366)
T ss_pred CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 999997654 3689999999999999999999999999998754
No 20
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=1.7e-75 Score=598.01 Aligned_cols=346 Identities=53% Similarity=0.930 Sum_probs=307.5
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCCCCC
Q 012301 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAY 157 (466)
Q Consensus 78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 157 (466)
|||+||||+++|+.+|||+|||+||++||||+++++.+.++|++|++||++|+|+.+|++||+||++++..+.+.+.+.|
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 79999999999999999999999999999999987778999999999999999999999999999887753211101111
Q ss_pred ---C----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccC
Q 012301 158 ---T----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (466)
Q Consensus 158 ---~----~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~G 230 (466)
. .++.++|+.||++++++ + ........++.|+.+.|.|+|+|+|+|+++++.+++.+.|+.|+|
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~g~-------~--~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G 151 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGGGS-------G--RRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHG 151 (354)
T ss_pred CCccccCcCchhhhHHHHhccCccc-------C--ccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCC
Confidence 1 12335677777632110 0 000112357899999999999999999999999999999999999
Q ss_pred cccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcE
Q 012301 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (466)
Q Consensus 231 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~ 310 (466)
+|........+|+.|+|+|.++...++++|++++.++|+.|.|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|++
T Consensus 152 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 231 (354)
T TIGR02349 152 TGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQR 231 (354)
T ss_pred CCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCE
Confidence 99988877899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEE
Q 012301 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL 390 (466)
Q Consensus 311 i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i 390 (466)
|+|+|+|++.+.+..+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+|+||.++|.||+++++|++++|
T Consensus 232 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i 311 (354)
T TIGR02349 232 LRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRL 311 (354)
T ss_pred EEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEE
Confidence 99999999976677889999999999999999999999999999999999999999999999889999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301 391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (466)
Q Consensus 391 ~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~ 433 (466)
+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 312 ~g~G~p~~~~-~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 312 KGKGVPRLRG-NGRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred CCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999997654 36899999999999999999999999999864
No 21
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-75 Score=602.68 Aligned_cols=346 Identities=41% Similarity=0.766 Sum_probs=298.0
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC-CC
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS 154 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-~~ 154 (466)
.|||+||||+++||.+|||+|||+||++||||+|++ +.++++|++|++||+||+|+.+|++||+||++++..+.+. +.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 389999999999999999999999999999999974 5688999999999999999999999999998876322110 00
Q ss_pred CCCC--CCC---------------cCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeE
Q 012301 155 SAYT--TNP---------------FDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEF 217 (466)
Q Consensus 155 ~~~~--~~~---------------~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v 217 (466)
+++. .++ .|+|+.||++..++|++ ........++.|+.+.|.|||+|+|+|+++++
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-------~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i 153 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-------RGGPAGARQGASKKVHITLSFEEAAKGVEKEL 153 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccc-------cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEE
Confidence 1110 001 13444444321000100 00011234789999999999999999999999
Q ss_pred eeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEE
Q 012301 218 ELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNI 297 (466)
Q Consensus 218 ~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l 297 (466)
.+.+.+.|+.|+|+|........+|+.|+|+|.++... |++++..+|+.|+|+|+++.+.|..|.|.|++.+.+++
T Consensus 154 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l 229 (391)
T PRK14284 154 LVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSV 229 (391)
T ss_pred EEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEE
Confidence 99999999999999999888889999999999887543 77887899999999999999999999999999999999
Q ss_pred EEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccC--CeEE
Q 012301 298 KVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE--GISE 375 (466)
Q Consensus 298 ~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tld--G~~~ 375 (466)
+|.||+|+.+|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+|+| +.++
T Consensus 230 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~ 309 (391)
T PRK14284 230 HVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCR 309 (391)
T ss_pred EEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEE
Confidence 99999999999999999999998878889999999999999999999999999999999999999999999999 5678
Q ss_pred EEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 376 v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
|+||+++++|++++|+|+|||..++ ..+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus 310 v~Ip~g~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~ 367 (391)
T PRK14284 310 LTIPEGIQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAATE 367 (391)
T ss_pred EEECCccCCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999998654 368999999999999999999999999999764
No 22
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-74 Score=594.99 Aligned_cols=353 Identities=44% Similarity=0.794 Sum_probs=304.2
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~ 154 (466)
...|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+|+.+|++||+||++++... .. .
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~-~~-~ 80 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGF-SQ-E 80 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccc-cc-c
Confidence 357999999999999999999999999999999999877899999999999999999999999999998876421 10 0
Q ss_pred CCCC-CCCcCccccccCCCCCC-CCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcc
Q 012301 155 SAYT-TNPFDLFETFFGPSMGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG 232 (466)
Q Consensus 155 ~~~~-~~~~d~f~~fFg~~~gg-~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG 232 (466)
+.|. .++.++|..|++. ++. |..+ +|+........++.|+.++|.|+|+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~f~~~---~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G 156 (378)
T PRK14283 81 DIFNNINFEDIFQGFGFG-IGNIFDMF---GFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSR 156 (378)
T ss_pred ccccccCccccccccccc-hhhhcccc---ccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccc
Confidence 0011 1111222222210 000 0000 01100011134788999999999999999999999999999999999999
Q ss_pred cccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEE
Q 012301 233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (466)
Q Consensus 233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~ 312 (466)
.........|+.|+|+|.+....++.+|++++..+|+.|.|.|+.+.+.|..|+|.|.+.+.++++|.||+|+++|++|+
T Consensus 157 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~ 236 (378)
T PRK14283 157 AEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLR 236 (378)
T ss_pred cCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEE
Confidence 98888888999999999999888999999998899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEcc
Q 012301 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAK 392 (466)
Q Consensus 313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g 392 (466)
|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.||++|++++|+|+||.+.|+||+++++|++++|+|
T Consensus 237 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g 316 (378)
T PRK14283 237 VSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKG 316 (378)
T ss_pred EeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECC
Confidence 99999997766789999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 393 KGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 393 ~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
+|||.... ..+|||||+|+|.||++|+++|+++|++|++..
T Consensus 317 ~G~p~~~~-~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~~~ 357 (378)
T PRK14283 317 HGMPSLRW-SGKGNLYVKVKVVVPKKLSPKQKELLREFASIS 357 (378)
T ss_pred CCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhc
Confidence 99997653 368999999999999999999999999999653
No 23
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-74 Score=594.56 Aligned_cols=354 Identities=57% Similarity=0.997 Sum_probs=310.7
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCC-C
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG-S 154 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~-~ 154 (466)
..|||+||||+++||.+|||+|||+||++||||+++++.++++|++|++||+||+||.+|++||+||+++++.+.+.+ .
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~ 81 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM 81 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence 469999999999999999999999999999999998888999999999999999999999999999988765321100 0
Q ss_pred CCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccc
Q 012301 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (466)
Q Consensus 155 ~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~ 234 (466)
..+ .++.++|++||++. ++ +++.++. .+.....++.|+.+.|.|+|+|+|+|+++++.+++.+.|+.|+|+|..
T Consensus 82 ~~~-~~~~d~f~~~fg~~-~~---~~~~~~~-~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~ 155 (374)
T PRK14293 82 GDM-GGFADIFETFFSGF-GG---AGGQGGR-RRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAK 155 (374)
T ss_pred ccc-cchHHHHHHHhccc-CC---CCCCCcc-ccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCC
Confidence 111 11236778888631 11 1100000 011123468899999999999999999999999999999999999998
Q ss_pred cCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEc
Q 012301 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (466)
Q Consensus 235 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (466)
.......|+.|+|+|.+....++++|++++...|+.|.|.|+++.+.|..|.|.|++.+.++++|.||+|+++|++|+|+
T Consensus 156 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~ 235 (374)
T PRK14293 156 PGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVS 235 (374)
T ss_pred CCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEc
Confidence 88888899999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEccCC
Q 012301 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG 394 (466)
Q Consensus 315 g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g~G 394 (466)
|+|++...+..+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|+++.|+|+||+++|+||+++++|++++|+|+|
T Consensus 236 g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G 315 (374)
T PRK14293 236 GEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKG 315 (374)
T ss_pred cCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCC
Confidence 99998766677899999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301 395 APKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 395 mP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
||..++.+.+|||||+|+|.||+.|+++|+++|++|+++.+
T Consensus 316 ~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~~~ 356 (374)
T PRK14293 316 VPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAKIKG 356 (374)
T ss_pred CCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 99876555789999999999999999999999999998754
No 24
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-74 Score=593.12 Aligned_cols=346 Identities=40% Similarity=0.760 Sum_probs=302.7
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCccccc--C--
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV--G-- 151 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~--~-- 151 (466)
..|||+||||+++||.+|||+|||+||++||||+++.+.++++|++|++||++|+|+.+|++||+||++++.... +
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 81 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence 469999999999999999999999999999999998777889999999999999999999999999988765321 1
Q ss_pred CCCCCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCc
Q 012301 152 GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (466)
Q Consensus 152 ~~~~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~Gt 231 (466)
++.+++..++.++|++||+..+|+.+. + .......++.|+.+.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus 82 g~~~~~~~~~~~~f~~~f~~~~gg~~~-----~--~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~ 154 (372)
T PRK14300 82 GNHGGFHPDINDIFGDFFSDFMGGSRR-----S--RPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGS 154 (372)
T ss_pred CCCCccccchhhhHHHHHHhhcCCCCC-----C--CCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCc
Confidence 111122223335677777643322100 0 000112468899999999999999999999999999999999999
Q ss_pred ccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEE
Q 012301 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (466)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i 311 (466)
|........+|+.|+|+|.++.. +|++++..+|+.|+|.|+++.+.|..|+|.|++.+.++++|.||+|+++|++|
T Consensus 155 g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 230 (372)
T PRK14300 155 GSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI 230 (372)
T ss_pred ccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEE
Confidence 99988888999999999987653 37888779999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCC-eEEEEeCCCCccCcEEEE
Q 012301 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVL 390 (466)
Q Consensus 312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG-~~~v~i~~g~~~g~~~~i 390 (466)
+++|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+|+|| .++|+||+++++|++++|
T Consensus 231 ~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri 310 (372)
T PRK14300 231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRL 310 (372)
T ss_pred EEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEE
Confidence 9999999977677899999999999999999999999999999999999999999999998 578999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301 391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (466)
Q Consensus 391 ~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~ 433 (466)
+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+++
T Consensus 311 ~g~G~p~~~~-~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~ 352 (372)
T PRK14300 311 RSKGMSKMRS-TIRGDMLTHIHVEVPKNLSKRQRELLEEFKKE 352 (372)
T ss_pred CCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999997653 36899999999999999999999999999964
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-74 Score=593.96 Aligned_cols=357 Identities=41% Similarity=0.760 Sum_probs=303.6
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC--C
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG--G 153 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~--~ 153 (466)
..|||+||||+++|+.+|||+|||+||++||||+|+++.+.++|++|++||+||+||.+|++||+||++++....+. +
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 57999999999999999999999999999999999888889999999999999999999999999998876532111 1
Q ss_pred CCCCC----CCCcCccccccCCC-CCC-CCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeeccc
Q 012301 154 SSAYT----TNPFDLFETFFGPS-MGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (466)
Q Consensus 154 ~~~~~----~~~~d~f~~fFg~~-~gg-~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~ 227 (466)
...|. .++.++|.+||+.. +++ |++.+..+..........++.|+.+.|.|+|+|+|+|+++++.+.+.+.|..
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 161 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA 161 (382)
T ss_pred ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence 11121 23335667765311 011 1111000000000112347899999999999999999999999999999999
Q ss_pred ccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcC
Q 012301 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (466)
Q Consensus 228 C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~ 307 (466)
|+|+|........+|+.|+|+|.++.. .|++++..+|+.|+|.|. +.+.|..|+|.|++.+.++++|.||+|+.+
T Consensus 162 C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~ 236 (382)
T PRK14291 162 CGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDN 236 (382)
T ss_pred CccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCC
Confidence 999999988888999999999988764 366777799999999995 688999999999999999999999999999
Q ss_pred CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCCCccCc
Q 012301 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGD 386 (466)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~ 386 (466)
|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+|+||+ ++|+||+++++|+
T Consensus 237 G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~ 316 (382)
T PRK14291 237 GSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGD 316 (382)
T ss_pred CCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCC
Confidence 999999999999877788999999999999999999999999999999999999999999999997 6899999999999
Q ss_pred EEEEccCCCCCCCCCCCCCcEEEEEEEECCC--CCC------HHHHHHHHHHHhhcCCCC
Q 012301 387 VLVLAKKGAPKLNKPSIRGDHLFTVKVTIPN--RIS------AKERELLEELASLRNTTG 438 (466)
Q Consensus 387 ~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~--~ls------~~~~~ll~~l~~~~~~~~ 438 (466)
+++|+|+|||..+. ..+|||||+|+|.||+ .|+ ++|+++|++|.+++..++
T Consensus 317 ~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~ 375 (382)
T PRK14291 317 KIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLLPEPE 375 (382)
T ss_pred EEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhcCCcc
Confidence 99999999998654 3689999999999997 599 999999999998876555
No 26
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.2e-74 Score=591.57 Aligned_cols=344 Identities=44% Similarity=0.807 Sum_probs=299.5
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC-CC
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG 153 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~-~~ 153 (466)
..|||+||||+++||.+|||+|||+||++||||+|+. +.++++|++|++||++|+|+.+|+.||+||++++..+.+ ++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 4699999999999999999999999999999999973 568899999999999999999999999999887653211 11
Q ss_pred CCCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCccc
Q 012301 154 SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA 233 (466)
Q Consensus 154 ~~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~ 233 (466)
.+++ .++.++|++||+..||+. . + . .+....++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.
T Consensus 83 ~~~~-~~~~~~f~~~f~~~fgg~--~---~--~-~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~ 153 (371)
T PRK10767 83 FGGG-GGFGDIFGDIFGDIFGGG--R---G--G-GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGA 153 (371)
T ss_pred CCCc-cccccchhhhhhhhccCC--c---c--c-cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCccc
Confidence 1111 011134455554333221 0 0 0 0112357899999999999999999999999999999999999999
Q ss_pred ccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEE
Q 012301 234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313 (466)
Q Consensus 234 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l 313 (466)
........|+.|+|+|.++... |++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|++|+|
T Consensus 154 ~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 229 (371)
T PRK10767 154 KPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRL 229 (371)
T ss_pred CCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEE
Confidence 9888888999999999876543 777777899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEccC
Q 012301 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKK 393 (466)
Q Consensus 314 ~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g~ 393 (466)
+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+||||.++|+||+++++|++++|+|+
T Consensus 230 ~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~ 309 (371)
T PRK10767 230 SGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGK 309 (371)
T ss_pred ecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECCC
Confidence 99999977677899999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301 394 GAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (466)
Q Consensus 394 GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~ 433 (466)
|||..+. ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 310 G~p~~~~-~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~ 348 (371)
T PRK10767 310 GVKSVRS-GARGDLYCQVVVETPVNLTKRQKELLEEFEES 348 (371)
T ss_pred CcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9997654 46899999999999999999999999999975
No 27
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.2e-74 Score=591.16 Aligned_cols=355 Identities=43% Similarity=0.724 Sum_probs=307.0
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC-C
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G 153 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-~ 153 (466)
..|||++|||+++|+.+|||+|||+||++||||+|+. +.+.++|++|++||++|+||.+|++||+||+++++.+.+. +
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGG 83 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCC
Confidence 5799999999999999999999999999999999974 5788999999999999999999999999998876532111 1
Q ss_pred CCCCCCCCcCcc---ccccCCCCCCCCCCCCCCccc-ccccccccCCceeeeEeeeccccccceeeeEeeeeeeeccccc
Q 012301 154 SSAYTTNPFDLF---ETFFGPSMGGFPGMNQTGFRT-RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCT 229 (466)
Q Consensus 154 ~~~~~~~~~d~f---~~fFg~~~gg~~~~~~~~f~~-~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~ 229 (466)
.++...++.++| .++|+..++++++++ .++. .......++.|+++.|.|+|+|+|+|+++++.+++.+.|+.|+
T Consensus 84 ~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~--~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~ 161 (386)
T PRK14289 84 FSGEGMSMEDIFSMFGDIFGGHGGGFGGFG--GFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCH 161 (386)
T ss_pred CCCCCcChhhhhHHhhhhhcccccCccccc--ccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCC
Confidence 110011222333 333553322221110 0110 0111234688999999999999999999999999999999999
Q ss_pred CcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCc
Q 012301 230 GTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGS 309 (466)
Q Consensus 230 GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~ 309 (466)
|+|.........|+.|+|.|.++...++++|++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|+
T Consensus 162 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 241 (386)
T PRK14289 162 GTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGM 241 (386)
T ss_pred CCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCC
Confidence 99999888889999999999999988999999998899999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEE
Q 012301 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLV 389 (466)
Q Consensus 310 ~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~ 389 (466)
+|+|+|+|++.+.+..+|||||+|++++|+.|+|+++||++++.|+|.|||+|+++.|+|+||+++|+||+++++|++++
T Consensus 242 ~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~r 321 (386)
T PRK14289 242 QLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVLR 321 (386)
T ss_pred EEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEEE
Confidence 99999999997767789999999999999999999999999999999999999999999999998999999999999999
Q ss_pred EccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301 390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (466)
Q Consensus 390 i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~ 433 (466)
|+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 322 i~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~ 364 (386)
T PRK14289 322 LRNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMENS 364 (386)
T ss_pred ECCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 99999997654 36899999999999999999999999999986
No 28
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.6e-73 Score=580.62 Aligned_cols=351 Identities=37% Similarity=0.689 Sum_probs=299.6
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhhhhcccccccccCcccccCC-
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG- 152 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~- 152 (466)
..|||+||||+++||.+|||+|||+||++||||+++.. .+.++|++|++||++|+|+.+|++||+||+.+++.+.++
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~ 81 (365)
T PRK14290 2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNF 81 (365)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCc
Confidence 36999999999999999999999999999999999753 688999999999999999999999999998876521100
Q ss_pred CCCCC--CCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccC
Q 012301 153 GSSAY--TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (466)
Q Consensus 153 ~~~~~--~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~G 230 (466)
+.+++ ..++.|+|..||++.+++ ..++ +.+. ......++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~~~~~-~~~~--~~~~-~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G 157 (365)
T PRK14290 82 NWDNFTHFSDINDIFNQIFGGNFGS-DFFS--GFGN-QQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG 157 (365)
T ss_pred cccccccccchhHHHHHHhcCcccc-cccc--cccc-ccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence 00111 124457788888742111 0000 0000 0111134789999999999999999999999999999999999
Q ss_pred cccccCcceeecCCCCcccEEEEeeeCCccceee--eeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCC
Q 012301 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQ--VSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG 308 (466)
Q Consensus 231 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~--~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G 308 (466)
+|.... ...+|+.|+|.|.+.... .+|++.+ ..+|+.|.|.|+++.+.|..|+|.|.+.+.++++|.||+|+.+|
T Consensus 158 ~g~~~~-~~~~C~~C~G~G~~~~~~--~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 234 (365)
T PRK14290 158 TGAKNG-KLITCPTCHGTGQQRIVR--GQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDN 234 (365)
T ss_pred ccCCCC-CCccCCCCCCcCEEEEEe--ccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCC
Confidence 998775 578999999999877655 3566543 47999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEE
Q 012301 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVL 388 (466)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~ 388 (466)
++|+|+|+|+. .++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|++++|+|++|.++|+||+++++|+++
T Consensus 235 ~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~i 312 (365)
T PRK14290 235 LRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVL 312 (365)
T ss_pred cEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEE
Confidence 99999999986 4778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcCC
Q 012301 389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNT 436 (466)
Q Consensus 389 ~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~~ 436 (466)
+|+|+|||..+. ..+|||||+|+|.+|+.|+++++++|++|+.+.++
T Consensus 313 ri~g~G~p~~~~-~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~~ 359 (365)
T PRK14290 313 KIKGAGMPHLNG-HGSGDLLVRINVEVPKRLTSKQKELIREFFDIKEN 359 (365)
T ss_pred EECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 999999997654 36899999999999999999999999999977654
No 29
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-72 Score=578.97 Aligned_cols=346 Identities=40% Similarity=0.723 Sum_probs=303.4
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC-CCCC
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GGSS 155 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~-~~~~ 155 (466)
.|||+||||+++||.+|||+|||+||++||||+++++.+.++|++|++||++|+||.+|++||+||+++.....+ +..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~ 81 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG 81 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence 489999999999999999999999999999999987788999999999999999999999999999876321101 1111
Q ss_pred CCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCccccc
Q 012301 156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM 235 (466)
Q Consensus 156 ~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~ 235 (466)
++..++.++|+.||++. ++++ ++.. ....++.|+.+.+.|+|+|+|+|+++++.+++...|+.|+|+|...
T Consensus 82 ~~~~d~~d~f~~~fg~~--~~~~----~~~~---~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~ 152 (371)
T PRK14292 82 GMGFDPMDIFEQLFGGA--GFGG----GRGR---RGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEP 152 (371)
T ss_pred ccCCChHHHHHHhhCCC--CcCC----CCCc---ccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCC
Confidence 11224457788888742 1110 0000 1134789999999999999999999999999999999999999876
Q ss_pred Ccc-eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEc
Q 012301 236 GSK-MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (466)
Q Consensus 236 ~~~-~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (466)
... ..+|+.|+|+|.+....++.+|++++..+|..|+|.|+.+...|..|.|.|++.+.++++|.||+|+.+|++|+|+
T Consensus 153 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~ 232 (371)
T PRK14292 153 GGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVA 232 (371)
T ss_pred CCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEe
Confidence 654 6889999999999887888889998889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEccCC
Q 012301 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG 394 (466)
Q Consensus 315 g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g~G 394 (466)
|+|++.+.+ . |||||+|++++|+.|+|+|+||++.+.|+|.|||+|+++.|+||||+..|+||+++++|++++|+|+|
T Consensus 233 G~G~~~~~~-~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G 310 (371)
T PRK14292 233 GMGNEGPGG-N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQG 310 (371)
T ss_pred cCcCCCCCC-C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCC
Confidence 999997643 3 99999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 395 APKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 395 mP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
||..++ ..+|||||+|+|.||+.|+++|+++|++|++..
T Consensus 311 ~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~ 349 (371)
T PRK14292 311 MPRLQG-AGTGDLIVEYEIAVPKQLSPEAREALEAYARAV 349 (371)
T ss_pred CCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 997654 357999999999999999999999999999654
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-69 Score=529.72 Aligned_cols=329 Identities=41% Similarity=0.742 Sum_probs=295.8
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCCC
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSS 155 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~ 155 (466)
+..||+||||+++||.+|||+|||+||++||||+|++ +.++|++|.+||||||||++|++||+||++++..+.+++
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~-- 78 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGG-- 78 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCC--
Confidence 5679999999999999999999999999999999965 889999999999999999999999999999986542221
Q ss_pred CCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCccccc
Q 012301 156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM 235 (466)
Q Consensus 156 ~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~ 235 (466)
++ +. |++||+ +|+.++ + +..++.|+.+.++|+|+|+|.|.++++.++++.+|+.|.|+|...
T Consensus 79 g~----~~-f~~~F~--~g~~~~--------~---~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgks 140 (337)
T KOG0712|consen 79 GF----GG-FSQFFG--FGGNGG--------R---GRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKS 140 (337)
T ss_pred CC----cc-HHHhcc--CCCcCc--------c---ccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCC
Confidence 11 11 888887 222111 1 122389999999999999999999999999999999999999987
Q ss_pred CcceeecCCCCcccEEEEeeeCCccceeee-eeCCCCCCccEE--EeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEE
Q 012301 236 GSKMRICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGEV--ISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (466)
Q Consensus 236 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~--~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~ 312 (466)
+... .|+.|.|+|..++..++.+|+.++. ..|..|+|.|.+ .++.|+.|.|.+.+.+.+.++|.|++|+.+++.|+
T Consensus 141 g~~~-~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~ 219 (337)
T KOG0712|consen 141 GSAP-KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKIT 219 (337)
T ss_pred CCCC-CCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceee
Confidence 7654 8999999999999999999998876 799999999998 56899999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCC--CccCcEEE
Q 012301 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLV 389 (466)
Q Consensus 313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g--~~~g~~~~ 389 (466)
+.|++++.+ +..+||+++.|..+.|+.|.|+++||++..+|+|.||++|+.+.+.|+||+ +++.++|+ +.||+.++
T Consensus 220 f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~ 298 (337)
T KOG0712|consen 220 FKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKR 298 (337)
T ss_pred eeeeeeecC-CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEe
Confidence 999999876 566999999999999999999999999999999999999999999999998 57888887 79999999
Q ss_pred EccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Q 012301 390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 431 (466)
Q Consensus 390 i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~ 431 (466)
|+|+|||+.+++ +|||||+|+|+||+ +++++...|+.++
T Consensus 299 v~~~gmp~~~~~--~g~lyi~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 299 VEGEGMPIFRNP--KGDLYIKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred ecCCCcccccCC--CCcEEEEEEEEcCC-CChHHHHHHHhhC
Confidence 999999999986 99999999999999 9999999998764
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.7e-58 Score=456.85 Aligned_cols=276 Identities=43% Similarity=0.740 Sum_probs=228.8
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC----
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG---- 151 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~---- 151 (466)
..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||+||++++..+..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 4799999999999999999999999999999999987789999999999999999999999999999875432110
Q ss_pred C--CCCCCC----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeec
Q 012301 152 G--GSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETC 225 (466)
Q Consensus 152 ~--~~~~~~----~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C 225 (466)
+ +...+. .++.++|+.|||+. +++++++ ..+.. .....+++.|+.+.+.|+|+|+|.|+++++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~-~~~~~~g-~~~~~-~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~----- 154 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGR-GGFGGFG-DLFGS-VGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA----- 154 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCC-CCCCCcc-ccccc-ccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-----
Confidence 0 111121 12235677777631 1111110 00110 011235789999999999999999998887531
Q ss_pred ccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCC
Q 012301 226 EVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGV 305 (466)
Q Consensus 226 ~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~ 305 (466)
.++++|+||+|+
T Consensus 155 --------------------------------------------------------------------g~~~~V~Ip~G~ 166 (291)
T PRK14299 155 --------------------------------------------------------------------GERLSVRIPPGV 166 (291)
T ss_pred --------------------------------------------------------------------CEEEEEecCCCc
Confidence 146789999999
Q ss_pred cCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccC
Q 012301 306 STGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPG 385 (466)
Q Consensus 306 ~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g 385 (466)
++|++|+++|+|++. |||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+|+||+++|+||+++++|
T Consensus 167 ~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~g 240 (291)
T PRK14299 167 REGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAG 240 (291)
T ss_pred CCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCCC
Confidence 999999999999962 99999999999999999999999999999999999999999999999899999999999
Q ss_pred cEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301 386 DVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 386 ~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
++++|+|+|||.. .+.+|||||+|+|.||+.|+++|+++|++|+++.+
T Consensus 241 ~~~rl~g~G~p~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~~~~ 288 (291)
T PRK14299 241 RKLRLKGKGWPRG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAELYK 288 (291)
T ss_pred CEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 9999999999963 35689999999999999999999999999987644
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=1.7e-56 Score=448.89 Aligned_cols=285 Identities=31% Similarity=0.559 Sum_probs=235.0
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhccccccccc----CcccccCC
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA----GVKSTVGG 152 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~----~~~~~~~~ 152 (466)
.|||++|||+++||.+|||+|||+||++||||+++++.+.++|++|++||++|+|+.+|+.||+||.. ++......
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~ 83 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQH 83 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccccccccc
Confidence 69999999999999999999999999999999998778999999999999999999999999999854 22211010
Q ss_pred -CCCCCC-CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccC
Q 012301 153 -GSSAYT-TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (466)
Q Consensus 153 -~~~~~~-~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~G 230 (466)
+...+. .++.++|+.||+.. ++ +.. .....++.|+.+.+.|+|+|+++|+.+++.+++.. |.
T Consensus 84 ~~~~~~~~~~~~~~f~~~~g~~----~~-----~~~--~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~~- 147 (306)
T PRK10266 84 GDGQSFNAEDFDDIFSSIFGQH----AR-----QSR--QRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----YN- 147 (306)
T ss_pred CCCCCCCCCCHHHHHHHHhCCC----CC-----CCC--CCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----cc-
Confidence 111121 23336677777531 11 000 11234688999999999999999999998876532 22
Q ss_pred cccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcE
Q 012301 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (466)
Q Consensus 231 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~ 310 (466)
|.|.+.. ...++++|.||+|+++|++
T Consensus 148 ----------------g~G~~~~--------------------------------------~~~~~~~V~Ip~G~~~G~~ 173 (306)
T PRK10266 148 ----------------AFGMIEQ--------------------------------------EIPKTLNVKIPAGVGNGQR 173 (306)
T ss_pred ----------------CCCeEEE--------------------------------------eeeEEEEEEECCCCcCCcE
Confidence 2221110 1135789999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEE
Q 012301 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL 390 (466)
Q Consensus 311 i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i 390 (466)
|+++|+|++..++..+|||||+|+|++|+.|+|+|+||++++.|+|.+|++|+++.|+|++|+++|+||+++++|++++|
T Consensus 174 i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri 253 (306)
T PRK10266 174 IRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRV 253 (306)
T ss_pred EEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEE
Confidence 99999999987777899999999999999999999999999999999999999999999999989999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 012301 391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (466)
Q Consensus 391 ~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~ 434 (466)
+|+|||..+ .+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus 254 ~g~G~p~~~---~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~~ 294 (306)
T PRK10266 254 KGKGLVSKK---QTGDLYAVLKIVMPPKPDEKTAALWQQLADAQ 294 (306)
T ss_pred CCCCCCCCC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999643 58999999999999999999999999999764
No 33
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-41 Score=332.50 Aligned_cols=315 Identities=34% Similarity=0.484 Sum_probs=237.1
Q ss_pred ccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCccccc
Q 012301 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV 150 (466)
Q Consensus 72 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~ 150 (466)
.+...+|||+||||+++|+..|||+||||||++||||+|++ |.|.+.|++|+.||||||||++|+.||+||++++....
T Consensus 11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~ 90 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDEN 90 (336)
T ss_pred hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccc
Confidence 44567899999999999999999999999999999999985 88999999999999999999999999999999987532
Q ss_pred CCCCCCCCCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccC
Q 012301 151 GGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (466)
Q Consensus 151 ~~~~~~~~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~G 230 (466)
....++. ...++|..||+.....+++- .......+|.++...+..++++.|.|...+..-.+.+.|. |.|
T Consensus 91 ~~~~~g~--~~~~~f~~~f~dfg~~~~g~-------~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g 160 (336)
T KOG0713|consen 91 KDGEGGG--GGNDIFSAFFGDFGVTVGGN-------PLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APG 160 (336)
T ss_pred cccccCC--cccchHHHhhcccccccCCC-------cccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCc
Confidence 1010110 11456666766421111111 0111246789999999999999999987665544444432 111
Q ss_pred cccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcE
Q 012301 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (466)
Q Consensus 231 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~ 310 (466)
+- .|+-+= .+..++...|++++. ....|.+|.+.+...+..++++.+..|...|..
T Consensus 161 ~~-----------~~~~~~-~~~~~~~~~g~~~~~------------q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~ 216 (336)
T KOG0713|consen 161 TR-----------KCNCRL-EMFTQQEGPGRFQML------------QEAVCDECPNVKLVLEEDPLEVEFERGDADGPE 216 (336)
T ss_pred cc-----------ccCChh-hheeeccCCChhhhh------------hhhhhccCCccceeecCCceeeeeeecccCCce
Confidence 11 111111 111222233333321 123444445556667788999999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeE-EEEeCCCCccCcEEE
Q 012301 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS-ELQVPPGTQPGDVLV 389 (466)
Q Consensus 311 i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~-~v~i~~g~~~g~~~~ 389 (466)
..+..+|.+.. -+.+||+++.+..-+|+.|.|+++|+++.+.+++.+++.|+..++.++|+.. .+....++.|+..++
T Consensus 217 ~~~~~~~~~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~ 295 (336)
T KOG0713|consen 217 EIFELEGEPHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTR 295 (336)
T ss_pred eeeeccCCcce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhh
Confidence 99999998865 5789999999999999999999999999999999999999999999999973 445556688999999
Q ss_pred EccCCCCCCCCCCCCCcEEEEEEEECCCC-CCH
Q 012301 390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNR-ISA 421 (466)
Q Consensus 390 i~g~GmP~~~~~~~~GDL~I~~~V~~P~~-ls~ 421 (466)
.+++|||........|.++++|.+.+|.+ ++.
T Consensus 296 ~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 296 KKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred hhhccchhhhccchhcceeEEecccCcccccch
Confidence 99999998887788999999999999954 555
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=329.02 Aligned_cols=245 Identities=44% Similarity=0.836 Sum_probs=216.7
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCCCCC
Q 012301 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAY 157 (466)
Q Consensus 78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 157 (466)
|||+||||+++|+..|||+||++||++||||.|.++++.++|++|.+|||||+|+++|++||+++..+. ..+
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~--------~~~ 115 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH--------GEF 115 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc--------ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999997651 122
Q ss_pred CCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCc
Q 012301 158 TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS 237 (466)
Q Consensus 158 ~~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~ 237 (466)
..+++++|..+|+++ + .....+.++++++.+.|+++..|.++.+.+.....|..|.|.|...+.
T Consensus 116 ~g~~~~~~~~~~~~~------~----------~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~ 179 (288)
T KOG0715|consen 116 GGNPFDVFLEFFGGK------M----------NKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGA 179 (288)
T ss_pred cCCccchHHHhhccc------c----------cccccCcccccccccCHHHHhhccccceEEEeecccccccCcCccccc
Confidence 337888898888741 1 012345678889999999999999999999999999999999999999
Q ss_pred ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCC
Q 012301 238 KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317 (466)
Q Consensus 238 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G 317 (466)
....|..|.|+|.+......++.+. +|..|.|.|.+..+.|..|.|.|.+...+.+.|.+|+|+.++.+|++.+.|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~ 255 (288)
T KOG0715|consen 180 KRESCKTCSGRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHG 255 (288)
T ss_pred ccccchhhhCcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCC
Confidence 9999999999997765444444322 899999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHh
Q 012301 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLD 358 (466)
Q Consensus 318 ~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~e 358 (466)
.. ||+|.+.|.+++.|+|+|.|++++..|++.|
T Consensus 256 ~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 256 ND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred cc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence 63 9999999999999999999999999998754
No 35
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=4.4e-39 Score=340.97 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=112.9
Q ss_pred EEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEecc
Q 012301 291 IRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV 370 (466)
Q Consensus 291 v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tl 370 (466)
+.+.++++|+||+|+++|++|+|+|+|+..+ ++ .|||||+|.+++|+.|+|+|+||++.+.|+|.+||+|+++.|+||
T Consensus 693 vkE~ktLeVkIPpGVkdGqkIRf~GeGDegp-gg-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTL 770 (871)
T TIGR03835 693 TNEAITLEIQLPITSQLNISAIFKGFGHDFG-NG-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGP 770 (871)
T ss_pred eeeeEEEEEecCCCCCCCCEEEeccccCCCC-CC-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCC
Confidence 4456789999999999999999999999864 33 499999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEE-CCCC
Q 012301 371 EGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVT-IPNR 418 (466)
Q Consensus 371 dG~~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~-~P~~ 418 (466)
||+++|+||+++++|+++||+|+|||..+ +.||||||+|+|. +++.
T Consensus 771 DGrVkLkIPpgTqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~~~k~ 817 (871)
T TIGR03835 771 NKLFNVRIPGGIKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSSVMKK 817 (871)
T ss_pred CCCEEEeeCCCCCCCcEEEECCCCCCCCC--CCCCCEEEEEEEeecccc
Confidence 99988999999999999999999999543 4689999999997 5543
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.1e-21 Score=188.43 Aligned_cols=263 Identities=34% Similarity=0.508 Sum_probs=179.4
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhhhhcccccccccCcccccC-
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG- 151 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~- 151 (466)
+..|||++|+|.++|+.+||++||+++|++||||+++.+ .+.++|++|.+||++|+|+.+|..||+||++++.....
T Consensus 1 ~~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~ 80 (306)
T KOG0714|consen 1 MGKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSF 80 (306)
T ss_pred CcccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCC
Confidence 357999999999999999999999999999999998866 56668999999999999999999999999876654111
Q ss_pred -CC--CC---CCCCCCcCccccccCCCCC--CC----------------CC---CCCCCccc-c-------cccccccCC
Q 012301 152 -GG--SS---AYTTNPFDLFETFFGPSMG--GF----------------PG---MNQTGFRT-R-------RRSTVTKGE 196 (466)
Q Consensus 152 -~~--~~---~~~~~~~d~f~~fFg~~~g--g~----------------~~---~~~~~f~~-~-------~~~~~~~g~ 196 (466)
.. .. ....++.++|.+|||.... .. .. ........ . .........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (306)
T KOG0714|consen 81 SSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSP 160 (306)
T ss_pred CCCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCC
Confidence 00 11 1123445667777762110 00 00 00000000 0 000000111
Q ss_pred ceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccE
Q 012301 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE 276 (466)
Q Consensus 197 di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~ 276 (466)
.+...+.+++++.+.|..+...+.+... ....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~------- 192 (306)
T KOG0714|consen 161 PVEHPLRVSLEDLYKGESKKMKISRQSF-----------------------------------------TSNG------- 192 (306)
T ss_pred CccCCcceeHHHhccccceeeecccccc-----------------------------------------cCCc-------
Confidence 1222233344555555444433322110 0000
Q ss_pred EEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE--Eee
Q 012301 277 VISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST--ISI 354 (466)
Q Consensus 277 ~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~--~~I 354 (466)
.........+.+.+.+++..|+.+....+|+..+. ..+-++++.+..++|..|.+.+.+|... ..|
T Consensus 193 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (306)
T KOG0714|consen 193 -----------REGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEI 260 (306)
T ss_pred -----------ccccCccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceeccccee
Confidence 00112345678999999999999999999987653 5678888889999999999999999999 999
Q ss_pred CHHhhhCCCEEEEeccCCeE-EEEeC-CCCccCcEEEEccCCCCC
Q 012301 355 SYLDAIMGTVVKVKTVEGIS-ELQVP-PGTQPGDVLVLAKKGAPK 397 (466)
Q Consensus 355 sl~eAl~G~~~~i~tldG~~-~v~i~-~g~~~g~~~~i~g~GmP~ 397 (466)
++.+|++|....++++++.. .+.+. ..+.++...+++++|||.
T Consensus 261 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 261 SLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred ehhhhhcCcceeeecccCccccCcccccccCCCceeeecCCCCCC
Confidence 99999999999999999973 34444 457899999999999985
No 37
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.84 E-value=5.4e-21 Score=154.80 Aligned_cols=80 Identities=38% Similarity=0.737 Sum_probs=70.6
Q ss_pred ceEEEEeeCHHhhhCCCEEEEeccCC-eEEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHH
Q 012301 347 DLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERE 425 (466)
Q Consensus 347 dL~~~~~Isl~eAl~G~~~~i~tldG-~~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ 425 (466)
||++++.|+++||++|++++|+|+|| .++|+||+++++|++++|+|+|||...+.+.+|||||+|+|.||++||++||+
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 89999999999999999999999999 57899999999999999999999998877789999999999999999999998
Q ss_pred H
Q 012301 426 L 426 (466)
Q Consensus 426 l 426 (466)
|
T Consensus 81 l 81 (81)
T PF01556_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 6
No 38
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2e-19 Score=171.41 Aligned_cols=73 Identities=59% Similarity=0.957 Sum_probs=69.0
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCccc
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~ 148 (466)
..|+|+||||+++|+.++||||||+|+++||||++++ |++.++|++||+||+||+||.+|..||+||+.++.-
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l 103 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL 103 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence 6689999999999999999999999999999999986 889999999999999999999999999999887653
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.3e-18 Score=172.05 Aligned_cols=72 Identities=56% Similarity=0.953 Sum_probs=67.8
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 147 (466)
+.|||.+|+|+++||.+|||+|||++++.||||+..++ .|++.|+.|.+||||||||.+|++||.||++|++
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 45899999999999999999999999999999998653 5789999999999999999999999999999987
No 40
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.3e-16 Score=150.86 Aligned_cols=69 Identities=59% Similarity=0.862 Sum_probs=63.8
Q ss_pred ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHHHhchhhhhccccccc
Q 012301 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (466)
Q Consensus 74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~--~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 142 (466)
.+..+||+||||+++|+..|||+|||++|++||||+++... +.++|+.|++||++|+|+.+|+.||+++
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 35678999999999999999999999999999999998543 8899999999999999999999999973
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.70 E-value=5.4e-18 Score=184.86 Aligned_cols=77 Identities=36% Similarity=0.587 Sum_probs=70.8
Q ss_pred ccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCccc
Q 012301 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (466)
Q Consensus 72 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~ 148 (466)
.+....+||+||||+++||.+|||+|||+||++||||+++.+.+.++|++|++||+|||||.+|+.||+||..++..
T Consensus 568 ~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 568 IEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 44456899999999999999999999999999999999987778899999999999999999999999999887653
No 42
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.68 E-value=2.7e-17 Score=126.90 Aligned_cols=62 Identities=53% Similarity=0.879 Sum_probs=58.8
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHHHhchhhhhcccc
Q 012301 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYD 139 (466)
Q Consensus 78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~--~~~~f~~i~~Ay~vL~d~~~R~~yd 139 (466)
|||+||||+++++.++||++|+++++++|||++.... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987644 7899999999999999999999998
No 43
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.6e-17 Score=158.90 Aligned_cols=88 Identities=49% Similarity=0.762 Sum_probs=74.8
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCCC
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~ 154 (466)
..|||++|||+.+|+.+||++|||+.|++||||+|++ |.|.++|+++.+||+||+|+.+|+.||.++..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~----- 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ----- 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----
Confidence 6799999999999999999999999999999999984 7899999999999999999999999999997664322
Q ss_pred CCCCCCCcCccccccC
Q 012301 155 SAYTTNPFDLFETFFG 170 (466)
Q Consensus 155 ~~~~~~~~d~f~~fFg 170 (466)
-..+++++|...|+
T Consensus 79 --~~~d~~~~~r~~f~ 92 (296)
T KOG0691|consen 79 --GREDQADGFRKKFG 92 (296)
T ss_pred --hhhhHHHHHHHHhh
Confidence 11344555655554
No 44
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.3e-17 Score=164.87 Aligned_cols=73 Identities=51% Similarity=0.742 Sum_probs=66.5
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 147 (466)
+.+.||+||||.++|+..|||++||+||++||||+|++ .++++.|+.|+.||+|||||..|+-||..-++.+.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 45679999999999999999999999999999999886 57899999999999999999999999987665443
No 45
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.6e-16 Score=156.99 Aligned_cols=119 Identities=33% Similarity=0.695 Sum_probs=95.9
Q ss_pred eeeeecccccCcccccCcc-------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec-------
Q 012301 220 SHLETCEVCTGTGAKMGSK-------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (466)
Q Consensus 220 ~~~~~C~~C~GtG~~~~~~-------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------- 285 (466)
+..++|++|+|+|.....+ +++|+.|+|+|+++. .+|+.|+|.|.+.+..-.++
T Consensus 157 t~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~~~~~i~V~IPaGv~ 224 (371)
T COG0484 157 TDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVKKKKSISVNIPAGVD 224 (371)
T ss_pred CCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEeeeeEEEEECCCCCc
Confidence 3678999999999864443 689999999999885 79999999999766533333
Q ss_pred -------cCceEE-------------------------------------------------EeeeEEEEEcCCCCcCCc
Q 012301 286 -------SGEGRI-------------------------------------------------RLKKNIKVKVPPGVSTGS 309 (466)
Q Consensus 286 -------~G~G~v-------------------------------------------------~~~~~l~V~Ip~G~~~G~ 309 (466)
.|+|.. +....++|+||+|+++|+
T Consensus 225 ~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~ 304 (371)
T COG0484 225 DGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGE 304 (371)
T ss_pred cCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCc
Confidence 333322 334458999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 310 ~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
+++|+|+|++..++...|||||+|+|..|..+..+...|+.
T Consensus 305 ~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~ 345 (371)
T COG0484 305 VFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLE 345 (371)
T ss_pred EEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHH
Confidence 99999999998777778999999999999998877766654
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.7e-16 Score=144.46 Aligned_cols=69 Identities=51% Similarity=0.828 Sum_probs=63.8
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHHHhchhhhhccccccccc
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE---PGATEKFKEISAAYEVLSDDKKRAMYDQYGEA 144 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 144 (466)
..|+|+||||.++|+..+|++||++|++++|||+++. .+++++|+.++.||.||+|.++|+.||+.|.-
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 4599999999999999999999999999999999953 46889999999999999999999999998843
No 47
>PHA03102 Small T antigen; Reviewed
Probab=99.60 E-value=9.5e-16 Score=137.46 Aligned_cols=67 Identities=25% Similarity=0.375 Sum_probs=61.9
Q ss_pred cccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCc
Q 012301 77 GDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV 146 (466)
Q Consensus 77 ~~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 146 (466)
..+|+||||+++| |.+|||+|||++|+++|||++. +.++|++|++||++|+|+.+|..||.+|....
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 4589999999999 9999999999999999999973 46899999999999999999999999997654
No 48
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.58 E-value=2.2e-15 Score=114.51 Aligned_cols=58 Identities=66% Similarity=0.950 Sum_probs=53.6
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHHHHhchhhh
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK--EPGATEKFKEISAAYEVLSDDKK 134 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~--~~~~~~~f~~i~~Ay~vL~d~~~ 134 (466)
.|||+||||+++++.++||+||+++++++|||++. .+.+.+.|.+|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 37999999999999999999999999999999987 46788999999999999999853
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.58 E-value=3.4e-15 Score=146.82 Aligned_cols=71 Identities=49% Similarity=0.764 Sum_probs=63.9
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 147 (466)
.+|||+||||.++|+..||-||||++|.+||||...++ .++++|..|..|-|||+||++|+.||. |+.-+.
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 56999999999999999999999999999999987653 478899999999999999999999998 555554
No 50
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3e-15 Score=138.59 Aligned_cols=71 Identities=42% Similarity=0.688 Sum_probs=66.0
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCc
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV 146 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 146 (466)
..|+||||||+++||.+|||+|||+|+++||||+++. .+.++.|.+|++||+.|+|+..|..|..||....
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 4599999999999999999999999999999999987 6778889999999999999999999999997653
No 51
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.56 E-value=5.1e-15 Score=110.34 Aligned_cols=54 Identities=70% Similarity=1.073 Sum_probs=51.1
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhch
Q 012301 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSD 131 (466)
Q Consensus 78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d 131 (466)
|||++|||+++++.++||++||+|++++|||++.. +.+.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999876 6688999999999999986
No 52
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=1.2e-14 Score=150.85 Aligned_cols=119 Identities=29% Similarity=0.654 Sum_probs=91.9
Q ss_pred eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (466)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|.|.|.+.+.+-.++
T Consensus 174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 241 (391)
T PRK14284 174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------------DPCSVCRGQGRIKDKRSVHVHIPAGVDSGM 241 (391)
T ss_pred CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------------CcCCCCCCcceecceEEEEEEECCCCCCCC
Confidence 35689999999975322 2579999999999865 68999999998755422222
Q ss_pred ----cCceE----------E---------------------------------------Eee--eEEEEEcCCCCcCCcE
Q 012301 286 ----SGEGR----------I---------------------------------------RLK--KNIKVKVPPGVSTGSI 310 (466)
Q Consensus 286 ----~G~G~----------v---------------------------------------~~~--~~l~V~Ip~G~~~G~~ 310 (466)
.|+|. + +.. +.++|+||+|+++|++
T Consensus 242 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~ 321 (391)
T PRK14284 242 RLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTI 321 (391)
T ss_pred EEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeE
Confidence 33222 1 222 6789999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 012301 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (466)
Q Consensus 311 i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~ 351 (466)
++|+|+|++...+..+|||||+|+|..|+.++.++.+|+..
T Consensus 322 ~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 362 (391)
T PRK14284 322 LKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQ 362 (391)
T ss_pred EEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999976556789999999999999888887766543
No 53
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=1.2e-14 Score=149.85 Aligned_cols=119 Identities=30% Similarity=0.596 Sum_probs=93.1
Q ss_pred eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|..|+|.|.+.+..-.++
T Consensus 168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~ 235 (369)
T PRK14282 168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------------EYCHECGGSGRIRRRVRTTVKIPAGV 235 (369)
T ss_pred CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------------CCCCCCCCceeEEEEEEEEEEeCCCC
Confidence 35689999999976432 2568999999999865 68999999997655422222
Q ss_pred --------cCceE----------E----------------------------------------EeeeEEEEEcCCCCcC
Q 012301 286 --------SGEGR----------I----------------------------------------RLKKNIKVKVPPGVST 307 (466)
Q Consensus 286 --------~G~G~----------v----------------------------------------~~~~~l~V~Ip~G~~~ 307 (466)
.|+|. + .+.++++|+||+|+++
T Consensus 236 ~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~ 315 (369)
T PRK14282 236 EDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQP 315 (369)
T ss_pred CCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCC
Confidence 22222 1 1234689999999999
Q ss_pred CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 012301 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (466)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~ 351 (466)
|++++|+|+|++...++.+|||||+|+|..|+.|++++.+|+..
T Consensus 316 g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~ 359 (369)
T PRK14282 316 ETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE 359 (369)
T ss_pred CCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999965455689999999999999999999887654
No 54
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.8e-14 Score=148.76 Aligned_cols=120 Identities=33% Similarity=0.619 Sum_probs=93.0
Q ss_pred eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|..... .+.+|+.|+|+|+++. ..|+.|+|.|.+.+.+-.++
T Consensus 157 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~ 224 (377)
T PRK14298 157 SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------------SPCPVCSGTGKVRKTRKITVNVPAGA 224 (377)
T ss_pred CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------------CCCCCCCCccEEEEEEEEEecCCCCC
Confidence 34679999999975432 2578999999998865 68999999998765422222
Q ss_pred --------cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301 286 --------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTG 308 (466)
Q Consensus 286 --------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (466)
.|+| .+ +.+..++|+||+|+++|
T Consensus 225 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g 304 (377)
T PRK14298 225 DSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTH 304 (377)
T ss_pred CCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccC
Confidence 2222 11 22344799999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEE
Q 012301 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (466)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~ 352 (466)
++++|+|+|++...+...|||||+|+|..|+.|++++.+|+.++
T Consensus 305 ~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 305 SVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999765556899999999999999999998876643
No 55
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=2.3e-14 Score=147.57 Aligned_cols=120 Identities=30% Similarity=0.595 Sum_probs=93.2
Q ss_pred eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeee-----------
Q 012301 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK----------- 284 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~----------- 284 (466)
....|+.|+|+|..... .+.+|+.|+|+|+++. ..|..|+|.|.+.+..-.+
T Consensus 160 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 227 (366)
T PRK14294 160 SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------------SPCKTCHGQGRVRVSKTVQVKIPAGVDTGS 227 (366)
T ss_pred CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------------cCCCCCCCceEeecceeEEEecCCCCcCCc
Confidence 35689999999975422 2679999999999865 6899999999876542222
Q ss_pred ---ccCceE----------E---------------------------------------EeeeEEEEEcCCCCcCCcEEE
Q 012301 285 ---CSGEGR----------I---------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (466)
Q Consensus 285 ---C~G~G~----------v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (466)
..|+|. + +.+..++|+||+|+++|++++
T Consensus 228 ~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~ir 307 (366)
T PRK14294 228 RLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFR 307 (366)
T ss_pred EEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEE
Confidence 233221 1 123457999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEE
Q 012301 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (466)
Q Consensus 313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~ 352 (466)
|+|+|++.+.+..+|||||+|+|.+|+.|++++.+|+..+
T Consensus 308 i~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~ 347 (366)
T PRK14294 308 FKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEF 347 (366)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999765557899999999999999999988876643
No 56
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2.6e-14 Score=147.13 Aligned_cols=120 Identities=31% Similarity=0.656 Sum_probs=95.0
Q ss_pred eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|..... ...+|+.|+|.|++++ ..|+.|+|.|.+....-.++
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 231 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVVVNEDISVKIPKGA 231 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEEEeeEEEEEECCCC
Confidence 45689999999975322 1468999999999865 78999999999765433322
Q ss_pred --------cCceE--------E---------------------------------------EeeeEEEEEcCCCCcCCcE
Q 012301 286 --------SGEGR--------I---------------------------------------RLKKNIKVKVPPGVSTGSI 310 (466)
Q Consensus 286 --------~G~G~--------v---------------------------------------~~~~~l~V~Ip~G~~~G~~ 310 (466)
.|+|. + +..++++|+||+|+++|++
T Consensus 232 ~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~ 311 (365)
T PRK14290 232 TDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEV 311 (365)
T ss_pred CCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcE
Confidence 33321 1 2345689999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEE
Q 012301 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (466)
Q Consensus 311 i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~ 352 (466)
++|+|+|++.+.+..+|||||+|+|.+|+.|++++.+|+.++
T Consensus 312 iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 312 LKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999765567899999999999999999999887653
No 57
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=3.3e-14 Score=146.73 Aligned_cols=120 Identities=33% Similarity=0.676 Sum_probs=93.5
Q ss_pred eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (466)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+.+....++
T Consensus 158 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 225 (371)
T PRK10767 158 SPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------------DPCKKCHGQGRVEKEKTLSVKIPAGVDTGD 225 (371)
T ss_pred CCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------------CCCCCCCCCceEeeeeeEEEecCCCCCCCc
Confidence 34689999999975321 3568999999999865 68999999998765433322
Q ss_pred ----cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCCcEEE
Q 012301 286 ----SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (466)
Q Consensus 286 ----~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (466)
.|+| .+ +.+..++|+||+|+++|++++
T Consensus 226 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~ 305 (371)
T PRK10767 226 RIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFR 305 (371)
T ss_pred EEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEE
Confidence 2222 11 123468999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEE
Q 012301 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (466)
Q Consensus 313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~ 352 (466)
|+|+|++...++.+|||||+|+|..|+.|++++.+|+.++
T Consensus 306 i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 306 LRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred ECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999765567899999999999999999998876643
No 58
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=4.4e-14 Score=145.34 Aligned_cols=119 Identities=24% Similarity=0.523 Sum_probs=92.3
Q ss_pred eeeecccccCcccccC-----cceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (466)
....|+.|+|+|.... ..+.+|+.|+|+|+++. ..|..|+|.|.+.+..-.++
T Consensus 162 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 229 (365)
T PRK14285 162 SPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------------NPCKSCKGKGSLKKKETIELKIPAGIDDNQ 229 (365)
T ss_pred CCccCCCccCceeEEecCceeEEeeecCCCCCcccccC------------CCCCCCCCCCEEeccEEEEEEECCCCCCCC
Confidence 3568999999996532 23679999999999875 68999999998765422222
Q ss_pred ----cCc----------eEE----------------------------------------EeeeEEEEEcCCCCcCCcEE
Q 012301 286 ----SGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSIL 311 (466)
Q Consensus 286 ----~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i 311 (466)
.|+ |.+ .+.++++|.||+|+++|+++
T Consensus 230 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~i 309 (365)
T PRK14285 230 QIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQI 309 (365)
T ss_pred EEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEE
Confidence 222 211 22357999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 012301 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (466)
Q Consensus 312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~ 351 (466)
+|+|+|++.+.+...|||||+|+|++|+.|++++..|+..
T Consensus 310 rl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 310 IIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred EECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999976555579999999999999999988766543
No 59
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=4.6e-14 Score=145.56 Aligned_cols=120 Identities=29% Similarity=0.563 Sum_probs=91.6
Q ss_pred eeeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec---------
Q 012301 220 SHLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC--------- 285 (466)
Q Consensus 220 ~~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C--------- 285 (466)
.....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+.+..-.++
T Consensus 159 ~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G 226 (373)
T PRK14301 159 TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------------HPCPKCKGSGIVQQTRELKVRIPAGVDTG 226 (373)
T ss_pred CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------------CCCCCCCCCceeccceEEEEEeCCCCcCC
Confidence 345689999999975422 2679999999999875 68999999998755322222
Q ss_pred -----cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCCcEE
Q 012301 286 -----SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGSIL 311 (466)
Q Consensus 286 -----~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i 311 (466)
.|+| .+ +.+..++|+||+|+++|+++
T Consensus 227 ~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ 306 (373)
T PRK14301 227 SRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVF 306 (373)
T ss_pred CEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEE
Confidence 2222 11 22344899999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 012301 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (466)
Q Consensus 312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~ 351 (466)
+|+|+|++...+..+|||||+|+|..|+.++.+..+++..
T Consensus 307 ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 307 RLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred EEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999976556689999999999999888777665543
No 60
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=9e-14 Score=143.43 Aligned_cols=118 Identities=25% Similarity=0.547 Sum_probs=90.5
Q ss_pred eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (466)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+.+..-.++
T Consensus 161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 228 (372)
T PRK14300 161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------------NPCKKCHGMGRYHKQRNLSVNIPAGVENGT 228 (372)
T ss_pred CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------------CCCCCCCCceEEEeeEEEEEEECCCCCCCc
Confidence 34689999999976322 2568999999999875 68999999999765422222
Q ss_pred ----cCce----------EE---------------------------------------E-eeeEEEEEcCCCCcCCcEE
Q 012301 286 ----SGEG----------RI---------------------------------------R-LKKNIKVKVPPGVSTGSIL 311 (466)
Q Consensus 286 ----~G~G----------~v---------------------------------------~-~~~~l~V~Ip~G~~~G~~i 311 (466)
.|+| .+ + ..+.++|+||+|+++|+++
T Consensus 229 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~i 308 (372)
T PRK14300 229 RIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQL 308 (372)
T ss_pred EEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEE
Confidence 2222 11 1 2357999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
+|+|+|++.+.+..+|||||+|+|..|..|+-++..|+.
T Consensus 309 ri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l~ 347 (372)
T PRK14300 309 RLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLE 347 (372)
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 999999987655678999999999999888776655443
No 61
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=1.1e-13 Score=143.12 Aligned_cols=118 Identities=28% Similarity=0.597 Sum_probs=89.9
Q ss_pred eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|..... ...+|+.|+|+|.++. .+|+.|+|.|.+.+.+-.++
T Consensus 155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 222 (378)
T PRK14278 155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------------DPCHECAGDGRVRARREITVKIPAGV 222 (378)
T ss_pred CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------------CCCCCCCCceeEecceEEEEEECCCC
Confidence 45689999999975322 2568999999999875 68999999998765422222
Q ss_pred --------cCce----------EE---------------------------------------Ee-eeEEEEEcCCCCcC
Q 012301 286 --------SGEG----------RI---------------------------------------RL-KKNIKVKVPPGVST 307 (466)
Q Consensus 286 --------~G~G----------~v---------------------------------------~~-~~~l~V~Ip~G~~~ 307 (466)
.|+| .+ +. .+.++|+||+|+++
T Consensus 223 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~ 302 (378)
T PRK14278 223 GDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQP 302 (378)
T ss_pred CCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCC
Confidence 2222 11 22 56789999999999
Q ss_pred CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
|++++|+|+|++...+...|||||+|+|..|+.++.+...|+.
T Consensus 303 g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~ 345 (378)
T PRK14278 303 GSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLR 345 (378)
T ss_pred CcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHH
Confidence 9999999999997655668999999999999877766655433
No 62
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=1.2e-13 Score=142.57 Aligned_cols=118 Identities=31% Similarity=0.539 Sum_probs=89.9
Q ss_pred eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeee-----------
Q 012301 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK----------- 284 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~----------- 284 (466)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|..|+|.|.+.+..-..
T Consensus 166 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~ 233 (372)
T PRK14286 166 SPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------------NPCKTCGGQGLQEKRRTINIKIPPGVETGS 233 (372)
T ss_pred CCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------------ccCCCCCCCcEEecceEEEEEECCCCCCCC
Confidence 34689999999975322 3578999999999875 6899999999876532222
Q ss_pred ---ccCc----------eEE----------------------------------------EeeeEEEEEcCCCCcCCcEE
Q 012301 285 ---CSGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSIL 311 (466)
Q Consensus 285 ---C~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i 311 (466)
..|+ |.+ .+.+.++|+||+|+++|+++
T Consensus 234 ~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ 313 (372)
T PRK14286 234 RLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVF 313 (372)
T ss_pred EEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEE
Confidence 2222 222 12346899999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
+|+|+|++...+...|||||+|+|..|+.++.++.+|+.
T Consensus 314 ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~ 352 (372)
T PRK14286 314 RLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIE 352 (372)
T ss_pred EECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHH
Confidence 999999997655568999999999999888777665443
No 63
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=1e-13 Score=142.91 Aligned_cols=119 Identities=30% Similarity=0.632 Sum_probs=91.5
Q ss_pred eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|..... ...+|+.|+|+|.++. ..|..|+|.|.+......++
T Consensus 154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~ 221 (371)
T PRK14287 154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------------QKCATCGGKGKVRKRKKINVKVPAGI 221 (371)
T ss_pred CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------------ccCCCCCCeeEEeeeEEEEEEECCcC
Confidence 45689999999975332 2578999999999875 68999999998755433322
Q ss_pred --------cCceE----------E---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301 286 --------SGEGR----------I---------------------------------------RLKKNIKVKVPPGVSTG 308 (466)
Q Consensus 286 --------~G~G~----------v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (466)
.|+|. + +.+..++|+||+|+++|
T Consensus 222 ~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g 301 (371)
T PRK14287 222 DHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTG 301 (371)
T ss_pred CCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCC
Confidence 22221 1 22345899999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 012301 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (466)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~ 351 (466)
++++|+|+|++...+...|||||+|+|..|+.|+++...|+..
T Consensus 302 ~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 344 (371)
T PRK14287 302 TSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMRE 344 (371)
T ss_pred cEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 9999999999976556689999999999999998888765543
No 64
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.5e-13 Score=142.66 Aligned_cols=117 Identities=29% Similarity=0.601 Sum_probs=89.1
Q ss_pred eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (466)
...+|+.|+|+|..... ...+|+.|+|+|++++ ..|..|.|.|.+.+..-.++
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 256 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTTRTRTINVRIPPGVEDGQ 256 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEEEeeeeEEEeCCCCCCCc
Confidence 45789999999976432 2579999999999876 68999999998765422222
Q ss_pred ----cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCCcEEE
Q 012301 286 ----SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (466)
Q Consensus 286 ----~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (466)
.|+| .+ +.+..++|+||+|+++|++|+
T Consensus 257 ~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~ir 336 (392)
T PRK14279 257 RIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILR 336 (392)
T ss_pred EEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEE
Confidence 2222 21 223458999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
|+|+|++.. ++.+|||||+|+|..|+.++.+...|+.
T Consensus 337 i~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~~l~ 373 (392)
T PRK14279 337 VRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAEALE 373 (392)
T ss_pred ECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 999999964 4568999999999999877766655443
No 65
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.4e-13 Score=141.81 Aligned_cols=117 Identities=22% Similarity=0.504 Sum_probs=89.7
Q ss_pred eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (466)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|..|+|.|.+.+..-.++
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~ 222 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYILKDEEIDAIIPEGIDDQN 222 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceEEEEEEEEEecCCCCCCCC
Confidence 45789999999975322 2568999999999875 68999999998766433322
Q ss_pred ----cCceE---------E----------------------------------------EeeeEEEEEcCCCCcCCcEEE
Q 012301 286 ----SGEGR---------I----------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (466)
Q Consensus 286 ----~G~G~---------v----------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (466)
.|+|. + .+.+.++|+||+|+++|++++
T Consensus 223 ~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~ 302 (369)
T PRK14288 223 RMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA 302 (369)
T ss_pred EEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence 22222 1 223468999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccccccCCcceE
Q 012301 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (466)
Q Consensus 313 l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~ 349 (466)
|+|+|++.+.+...|||||+|+|+.|+.|+.+...++
T Consensus 303 i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 339 (369)
T PRK14288 303 FRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELL 339 (369)
T ss_pred EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999765445799999999999998877765543
No 66
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.44 E-value=1.6e-13 Score=140.96 Aligned_cols=116 Identities=33% Similarity=0.730 Sum_probs=89.4
Q ss_pred eeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeee--------
Q 012301 222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK-------- 284 (466)
Q Consensus 222 ~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~-------- 284 (466)
...|+.|+|+|..... ...+|+.|+|+|++++ ..|+.|.|.|.+.+..-.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 227 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------------EPCSTCKGKGRVKERKTITVKIPAGVD 227 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------------CCCCCCCCCcEecccceEEEEECCCCC
Confidence 5689999999965422 2469999999999875 6799999999875532222
Q ss_pred ------ccCceE----------E---------------------------------------EeeeEEEEEcCCCCcCCc
Q 012301 285 ------CSGEGR----------I---------------------------------------RLKKNIKVKVPPGVSTGS 309 (466)
Q Consensus 285 ------C~G~G~----------v---------------------------------------~~~~~l~V~Ip~G~~~G~ 309 (466)
..|+|. + ..+..++|.||+|+++|+
T Consensus 228 ~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~ 307 (354)
T TIGR02349 228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGT 307 (354)
T ss_pred CCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCc
Confidence 122221 1 112368999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceE
Q 012301 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (466)
Q Consensus 310 ~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~ 349 (466)
+++|+|+|++...+..+|||||+|+|..|+.|+.++.+++
T Consensus 308 ~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l 347 (354)
T TIGR02349 308 VFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL 347 (354)
T ss_pred EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999999765557899999999999999988876654
No 67
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=2.3e-13 Score=140.67 Aligned_cols=118 Identities=33% Similarity=0.642 Sum_probs=88.7
Q ss_pred eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|..... ...+|+.|+|+|.++. ..|+.|+|.|.+.+..-.++
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~ 226 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------------EKCPTCHGKGKVRKRKKINVKIPAGV 226 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------------CCCCCCCCceEEEEEEEEEEEeCCCC
Confidence 45689999999975321 2568999999999865 68999999998765422222
Q ss_pred --------cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301 286 --------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTG 308 (466)
Q Consensus 286 --------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (466)
.|+| .+ +.+..++|+||+|+++|
T Consensus 227 ~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g 306 (376)
T PRK14280 227 DNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTG 306 (376)
T ss_pred cCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCC
Confidence 2222 11 22345899999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
++++|+|+|++...+...|||||+|+|..|+.++.+...++.
T Consensus 307 ~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~ 348 (376)
T PRK14280 307 TQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLR 348 (376)
T ss_pred cEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 999999999997655568999999999999877766654443
No 68
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.6e-13 Score=141.98 Aligned_cols=118 Identities=25% Similarity=0.551 Sum_probs=89.3
Q ss_pred eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+.+....++
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~ 229 (380)
T PRK14276 162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------------EPCQTCHGTGHEKQAHTVSVKIPAGV 229 (380)
T ss_pred CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------------CCCCCCCCceEEEEEEEEEEEeCCCc
Confidence 34689999999975322 2568999999999875 68999999998765433322
Q ss_pred --------cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301 286 --------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTG 308 (466)
Q Consensus 286 --------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (466)
.|+| .+ +.+..++|+||+|+++|
T Consensus 230 ~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g 309 (380)
T PRK14276 230 ETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTG 309 (380)
T ss_pred cCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCC
Confidence 2222 11 22345899999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
++++|+|+|++...+..+|||||+|+|..|+.++.+...++.
T Consensus 310 ~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~ 351 (380)
T PRK14276 310 KKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALK 351 (380)
T ss_pred CEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 999999999997655668999999999999887766655443
No 69
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.5e-13 Score=142.91 Aligned_cols=118 Identities=33% Similarity=0.679 Sum_probs=89.7
Q ss_pred eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+....-.++
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 245 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQGEVTVKVTVPAGV 245 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEecceEEEEecCCCC
Confidence 35689999999975332 2568999999999876 68999999998765422222
Q ss_pred --------cCceE----------E---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301 286 --------SGEGR----------I---------------------------------------RLKKNIKVKVPPGVSTG 308 (466)
Q Consensus 286 --------~G~G~----------v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (466)
.|+|. + +.+..++|+||+|+++|
T Consensus 246 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G 325 (397)
T PRK14281 246 QDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPE 325 (397)
T ss_pred CCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCC
Confidence 22222 1 22345899999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
++++|+|+|++...++..|||||+|+|..|+.++.+...|+.
T Consensus 326 ~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~ 367 (397)
T PRK14281 326 TMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLK 367 (397)
T ss_pred cEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHH
Confidence 999999999997655678999999999999877766654433
No 70
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=3.1e-13 Score=139.32 Aligned_cols=118 Identities=21% Similarity=0.533 Sum_probs=87.9
Q ss_pred eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|..... .+.+|+.|+|+|++++ ..|+.|+|.|.+.+..-.++
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 232 (372)
T PRK14296 165 DIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------------NKCKNCKGKGKYLERKKIEVNIPKGI 232 (372)
T ss_pred CCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------------ccccCCCCceEEEEEEEEEEEECCCC
Confidence 35689999999976432 2468999999999876 68999999998754322222
Q ss_pred --------cCceE----------E----------------------------------------EeeeEEEEEcCCCCcC
Q 012301 286 --------SGEGR----------I----------------------------------------RLKKNIKVKVPPGVST 307 (466)
Q Consensus 286 --------~G~G~----------v----------------------------------------~~~~~l~V~Ip~G~~~ 307 (466)
.|+|. + +.+..++|+||+|+++
T Consensus 233 ~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~ 312 (372)
T PRK14296 233 RPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINS 312 (372)
T ss_pred CCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCC
Confidence 22221 1 2233489999999999
Q ss_pred CcEEEEccCCCCCC-CCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 308 GSILRVVGEGDAGP-RGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 308 G~~i~l~g~G~~~~-~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
|++++|+|+|++.. .++..|||||+|+|..|+.++.+...|+.
T Consensus 313 g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 356 (372)
T PRK14296 313 NELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIE 356 (372)
T ss_pred CcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 99999999999843 34467999999999999887766655443
No 71
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=3.4e-13 Score=139.85 Aligned_cols=118 Identities=31% Similarity=0.618 Sum_probs=89.0
Q ss_pred eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|..|+|.|.+.+....++
T Consensus 171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~ 238 (386)
T PRK14277 171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------------DPCNKCGGTGRIRRRRKIKVNIPAGI 238 (386)
T ss_pred CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------------CCCCCCCCCcEEeeeeEEEEecCCCc
Confidence 35689999999975322 2468999999999875 68999999998755433222
Q ss_pred --------cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301 286 --------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTG 308 (466)
Q Consensus 286 --------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (466)
.|+| .+ +.+..++|.||+|+++|
T Consensus 239 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g 318 (386)
T PRK14277 239 DDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTG 318 (386)
T ss_pred cCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCC
Confidence 2222 11 12334789999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
++++|+|+|++...+...|||||+|+|..|+.++.+..+++.
T Consensus 319 ~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~ 360 (386)
T PRK14277 319 TKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLR 360 (386)
T ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHH
Confidence 999999999997655567999999999999877766655443
No 72
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=3.8e-13 Score=139.25 Aligned_cols=116 Identities=28% Similarity=0.580 Sum_probs=87.9
Q ss_pred eeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec-------
Q 012301 222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (466)
Q Consensus 222 ~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------- 285 (466)
...|+.|+|+|..... ...+|+.|+|+|.++. ..|..|+|.|.+.+.....+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 232 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------------DPCNKCHGKGKVRKNRKIKVNVPAGVD 232 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------------CCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence 5689999999965321 3678999999998865 68999999997654322222
Q ss_pred -------cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCCc
Q 012301 286 -------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (466)
Q Consensus 286 -------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~ 309 (466)
.|+| .+ +.+..++|+||+|+++|+
T Consensus 233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~ 312 (380)
T PRK14297 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGT 312 (380)
T ss_pred CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCC
Confidence 2211 11 223458999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceE
Q 012301 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (466)
Q Consensus 310 ~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~ 349 (466)
+++|+|+|++...+...|||||+|+|..|+.++.+...++
T Consensus 313 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 352 (380)
T PRK14297 313 VFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEAL 352 (380)
T ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHH
Confidence 9999999999765567899999999999987776665443
No 73
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.41 E-value=3.9e-13 Score=104.41 Aligned_cols=65 Identities=49% Similarity=1.107 Sum_probs=54.8
Q ss_pred cccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEE-eeeeeeccCce
Q 012301 225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI-SEYCRKCSGEG 289 (466)
Q Consensus 225 C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-~~~C~~C~G~G 289 (466)
|+.|+|+|........+|+.|+|+|+++...+++++++++..+|+.|+|+|+++ +++|..|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 899999999988899999999999999998888888888889999999999999 99999999976
No 74
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=4.8e-13 Score=138.69 Aligned_cols=117 Identities=29% Similarity=0.576 Sum_probs=89.1
Q ss_pred eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (466)
....|+.|+|+|..... .+.+|+.|+|+|+++. ..|..|.|.|.+.+..-.++
T Consensus 182 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~ 249 (389)
T PRK14295 182 TPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQ 249 (389)
T ss_pred CCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceEeeeeEEEEEeCCCCCCCC
Confidence 35789999999975332 2578999999999876 68999999998765422222
Q ss_pred ----cCce----------EE----------------------------------------EeeeEEEEEcCCCCcCCcEE
Q 012301 286 ----SGEG----------RI----------------------------------------RLKKNIKVKVPPGVSTGSIL 311 (466)
Q Consensus 286 ----~G~G----------~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i 311 (466)
.|+| .+ .+.++++|+||+|+++|+++
T Consensus 250 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~i 329 (389)
T PRK14295 250 RIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVL 329 (389)
T ss_pred EEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEE
Confidence 2222 11 12347999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
+|+|+|++.. ++.+|||||+|+|..|+.++.+...|+.
T Consensus 330 ri~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~l~ 367 (389)
T PRK14295 330 RVRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREALE 367 (389)
T ss_pred EECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 9999999964 4568999999999999877766655543
No 75
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=4.3e-13 Score=139.18 Aligned_cols=117 Identities=30% Similarity=0.601 Sum_probs=89.2
Q ss_pred eeeeecccccCcccccCcc---------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeee------
Q 012301 220 SHLETCEVCTGTGAKMGSK---------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK------ 284 (466)
Q Consensus 220 ~~~~~C~~C~GtG~~~~~~---------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~------ 284 (466)
.....|+.|+|+|...... ..+|+.|+|+|+++. ..|+.|+|.|.+....-.+
T Consensus 169 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G 236 (386)
T PRK14289 169 NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK------------KKCKKCGGEGIVYGEEVITVKIPAG 236 (386)
T ss_pred CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC------------cCCCCCCCCcEEeeeEEEEEEeCCC
Confidence 3457899999999764322 578999999998865 6799999999876542222
Q ss_pred --------ccCceE----------E---------------------------------------EeeeEEEEEcCCCCcC
Q 012301 285 --------CSGEGR----------I---------------------------------------RLKKNIKVKVPPGVST 307 (466)
Q Consensus 285 --------C~G~G~----------v---------------------------------------~~~~~l~V~Ip~G~~~ 307 (466)
..|+|. . +....++|.||+|+++
T Consensus 237 ~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~ 316 (386)
T PRK14289 237 VAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQP 316 (386)
T ss_pred CCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCC
Confidence 222221 1 2234589999999999
Q ss_pred CcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 012301 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (466)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL 348 (466)
|++++|+|+|++...++.+|||||+|+|+.|..++.+...|
T Consensus 317 g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~ 357 (386)
T PRK14289 317 GKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQT 357 (386)
T ss_pred CcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHH
Confidence 99999999999976666789999999999998776665543
No 76
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=4.5e-13 Score=138.44 Aligned_cols=120 Identities=26% Similarity=0.529 Sum_probs=91.0
Q ss_pred eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|..... ...+|+.|+|.|+++. ..|..|.|.|.+.+..-.++
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~IppG~ 226 (374)
T PRK14293 159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------------DPCDACGGQGVKQVTKKLKINIPAGV 226 (374)
T ss_pred CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------------cCCCCCCCCcccccceEEEEEeCCCC
Confidence 34689999999975321 2468999999999875 68999999998654322111
Q ss_pred --------cCc----------eEE---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301 286 --------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTG 308 (466)
Q Consensus 286 --------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (466)
.|+ |.+ ..+..++|+||+|+++|
T Consensus 227 ~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g 306 (374)
T PRK14293 227 DTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPN 306 (374)
T ss_pred CCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCC
Confidence 222 221 22334789999999999
Q ss_pred cEEEEccCCCCCCCC-CCCccEEEEEEEEeccccccCCcceEEEE
Q 012301 309 SILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (466)
Q Consensus 309 ~~i~l~g~G~~~~~g-~~~GDLiV~v~v~~~~~f~R~g~dL~~~~ 352 (466)
++++|+|+|++...+ +..|||||+|+|..|+.|++++.+|+..+
T Consensus 307 ~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 307 TVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999996543 35799999999999999999998876543
No 77
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=6.8e-13 Score=137.25 Aligned_cols=118 Identities=28% Similarity=0.601 Sum_probs=89.1
Q ss_pred eeeecccccCcccccCc---------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|..... ...+|+.|+|+|+.+. ..|..|+|.|.+.+.+..++
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~ 229 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE------------KPCSNCHGKGVVRETKTISVKIPAGV 229 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC------------CCCCCCCCceeeccceeEEEEECCCC
Confidence 34679999999986422 2578999999998865 68999999998765422222
Q ss_pred --------cCce----------EE---------------------------------------EeeeEEEEEcCCCCcCC
Q 012301 286 --------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTG 308 (466)
Q Consensus 286 --------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (466)
.|+| .+ +.+..++|.||+|+++|
T Consensus 230 ~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g 309 (378)
T PRK14283 230 ETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSG 309 (378)
T ss_pred CCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCC
Confidence 2222 11 12346899999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
++++|+|+|++...+...|||||+|+|..|+.++.+...|+.
T Consensus 310 ~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~ 351 (378)
T PRK14283 310 TTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLR 351 (378)
T ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHH
Confidence 999999999997655568999999999999877766655443
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.3e-13 Score=135.72 Aligned_cols=90 Identities=42% Similarity=0.696 Sum_probs=71.9
Q ss_pred ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccC
Q 012301 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG 151 (466)
Q Consensus 74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~ 151 (466)
.+.+|||.||||.++|+..|||+|||++|+.+|||++.. .+++.+|++|-+||.||+||.+|..||.-- . +... +
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~-d-le~~-~ 446 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ-D-LEEV-G 446 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc-c-hhhh-c
Confidence 446799999999999999999999999999999999863 578899999999999999999999999832 1 1111 1
Q ss_pred CCCCCCCCCCcCccccc
Q 012301 152 GGSSAYTTNPFDLFETF 168 (466)
Q Consensus 152 ~~~~~~~~~~~d~f~~f 168 (466)
.+. ...+|+++|.-|
T Consensus 447 ~~~--a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 447 SGG--AGFDPFNIFRAF 461 (486)
T ss_pred CCC--cCcChhhhhhhc
Confidence 111 235777777666
No 79
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.7e-13 Score=129.20 Aligned_cols=72 Identities=40% Similarity=0.732 Sum_probs=67.3
Q ss_pred cccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhccccccc
Q 012301 71 SVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (466)
Q Consensus 71 ~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 142 (466)
.+.+...|.|+||||+++++.+||++|||+||++||||+++++++.+.|+.|.+||++|.|.+.|..||-+-
T Consensus 27 gLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 27 GLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred hhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 366777899999999999999999999999999999999999888899999999999999999999999743
No 80
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.37 E-value=8e-13 Score=137.89 Aligned_cols=117 Identities=24% Similarity=0.532 Sum_probs=87.6
Q ss_pred eeeecccccCcccccC---------cceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec------
Q 012301 221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (466)
....|+.|+|+|.... ....+|+.|+|+|+++... ..|..|+|.|.+.+..-.++
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~v~~~~~l~V~Ip~G~ 234 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES----------KKCKNCSGKGVKKTRKILEVNIDKGV 234 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc----------ccCCcCCCcceeeeeeEEEEeeCCCC
Confidence 4578999999996422 1256899999999987532 68999999998765433322
Q ss_pred --------cCceE---------E----------------------------------------EeeeEEEEEcCCC--Cc
Q 012301 286 --------SGEGR---------I----------------------------------------RLKKNIKVKVPPG--VS 306 (466)
Q Consensus 286 --------~G~G~---------v----------------------------------------~~~~~l~V~Ip~G--~~ 306 (466)
.|+|. + .+.+.++|+||+| ++
T Consensus 235 ~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~ 314 (421)
T PTZ00037 235 PNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVK 314 (421)
T ss_pred CCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccC
Confidence 33332 1 2344689999999 99
Q ss_pred CCcEEEEccCCCCCCCC-CCCccEEEEEEEEec--cccccCCcc
Q 012301 307 TGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEI--PGIQRDGID 347 (466)
Q Consensus 307 ~G~~i~l~g~G~~~~~g-~~~GDLiV~v~v~~~--~~f~R~g~d 347 (466)
+|++++|+|+|++...+ +..|||||+|+|..| ..++.+...
T Consensus 315 pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ 358 (421)
T PTZ00037 315 PGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKE 358 (421)
T ss_pred CCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHH
Confidence 99999999999996543 467999999999999 766655543
No 81
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=2.1e-12 Score=133.83 Aligned_cols=109 Identities=34% Similarity=0.646 Sum_probs=82.8
Q ss_pred eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec----------
Q 012301 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (466)
....|+.|+|+|..... ...+|+.|+|+|. ++ ..|..|+|.|.+.+..-.++
T Consensus 172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 238 (382)
T PRK14291 172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR------------EPCSKCNGRGLVIKKETIKVRIPPGVDNGS 238 (382)
T ss_pred CCccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec------------cCCCCCCCCceEEeeeEEEEEeCCCCCCCC
Confidence 45689999999975332 2678999999995 33 68999999998765432222
Q ss_pred ----cCceE----------E----------------------------------------EeeeEEEEEcCCCCcCCcEE
Q 012301 286 ----SGEGR----------I----------------------------------------RLKKNIKVKVPPGVSTGSIL 311 (466)
Q Consensus 286 ----~G~G~----------v----------------------------------------~~~~~l~V~Ip~G~~~G~~i 311 (466)
.|+|. + .+...++|+||+|+++|++|
T Consensus 239 ~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i 318 (382)
T PRK14291 239 KLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKI 318 (382)
T ss_pred EEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEE
Confidence 33322 1 12346899999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEecc--ccc
Q 012301 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIP--GIQ 342 (466)
Q Consensus 312 ~l~g~G~~~~~g~~~GDLiV~v~v~~~~--~f~ 342 (466)
+|+|+|++...+..+|||||+|+|..|. .++
T Consensus 319 ~i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls 351 (382)
T PRK14291 319 RVPGKGMPRLKGSGYGDLVVRVHIDVPKISMLS 351 (382)
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcC
Confidence 9999999976555789999999999986 355
No 82
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=1.4e-12 Score=134.63 Aligned_cols=129 Identities=26% Similarity=0.516 Sum_probs=93.8
Q ss_pred ccceeeeEeeeeeeecccccCcccccCcc---------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEee
Q 012301 210 IFGAEKEFELSHLETCEVCTGTGAKMGSK---------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISE 280 (466)
Q Consensus 210 ~~G~~~~v~~~~~~~C~~C~GtG~~~~~~---------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~ 280 (466)
..|.-..........|..|+|+|...... ..+|..|+|.|..+. ..|+.|.|.|.+...
T Consensus 145 C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~ 212 (371)
T PRK14292 145 CHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT------------DPCTVCRGRGRTLKA 212 (371)
T ss_pred CcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC------------CCCCCCCCceEEeec
Confidence 44443332223357899999999764222 468999999998765 789999999987543
Q ss_pred e--------------eeeccCceE--------E---------------------------------------EeeeEEEE
Q 012301 281 Y--------------CRKCSGEGR--------I---------------------------------------RLKKNIKV 299 (466)
Q Consensus 281 ~--------------C~~C~G~G~--------v---------------------------------------~~~~~l~V 299 (466)
. .....|+|. + +.+..++|
T Consensus 213 ~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v 292 (371)
T PRK14292 213 ETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVI 292 (371)
T ss_pred ceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEE
Confidence 2 122244332 2 12233579
Q ss_pred EcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 300 KVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 300 ~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
+||+|+++|++++|+|+|++...+..+|||||+|+|..|+.|+.+...|+.
T Consensus 293 ~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14292 293 EVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE 343 (371)
T ss_pred ecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999997666678999999999999988887766543
No 83
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.34 E-value=1.1e-12 Score=120.13 Aligned_cols=65 Identities=31% Similarity=0.465 Sum_probs=56.5
Q ss_pred cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHHHhchhhhhcccccc
Q 012301 77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMYDQY 141 (466)
Q Consensus 77 ~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d~~~R~~yd~~ 141 (466)
.|||++|||++. ++.++|+++||+|++++|||++.... +...+..||+||++|+||.+|+.|+-.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 589999999996 78999999999999999999985421 234588999999999999999999753
No 84
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.34 E-value=1.4e-12 Score=120.24 Aligned_cols=64 Identities=31% Similarity=0.517 Sum_probs=56.5
Q ss_pred cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHHhchhhhhccccc
Q 012301 77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQ 140 (466)
Q Consensus 77 ~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~------~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 140 (466)
.|||++|||++. ++..+|+++||++++++|||+.... .+.+.|..||+||++|+||.+|+.|+-
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999995 6889999999999999999997532 145689999999999999999999984
No 85
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-12 Score=132.41 Aligned_cols=66 Identities=42% Similarity=0.638 Sum_probs=63.9
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccc
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~ 141 (466)
..|.|.+|||++++|.++|||.||++|..-|||||..+.|++.|+.++.|||+|+|+++|..||.-
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999999973
No 86
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=6.9e-12 Score=115.47 Aligned_cols=65 Identities=28% Similarity=0.390 Sum_probs=57.7
Q ss_pred CcccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHHhchhhhhccccc
Q 012301 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQ 140 (466)
Q Consensus 76 ~~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~------~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 140 (466)
..|||++|||++. .+..+|+++||+|++++|||++... .+.+.|..||+||++|+||.+|+.|+-
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 5689999999996 6789999999999999999997542 145689999999999999999999995
No 87
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.26 E-value=7.1e-12 Score=115.86 Aligned_cols=65 Identities=31% Similarity=0.434 Sum_probs=56.3
Q ss_pred CcccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC-cc-----hHHHHHHHHHHHHHhchhhhhccccc
Q 012301 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKE-PG-----ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (466)
Q Consensus 76 ~~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~-~~-----~~~~f~~i~~Ay~vL~d~~~R~~yd~ 140 (466)
..|||++|||++. ++..+|+++||+|++++|||++.. +. +.+.+..||+||++|+||.+|+.|+-
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3699999999995 689999999999999999999763 22 23446899999999999999999985
No 88
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.26 E-value=6.5e-12 Score=107.16 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=47.6
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhc
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS 130 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~ 130 (466)
.++|+||||++++|.+|||++||+|++++|||+. ++.+.|++|++||++|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999985 56788999999999995
No 89
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.16 E-value=2.9e-11 Score=119.17 Aligned_cols=55 Identities=47% Similarity=0.638 Sum_probs=50.1
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHHHhch
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVLSD 131 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--------~~~~~~f~~i~~Ay~vL~d 131 (466)
.++|+||||++++|.+|||+|||+|+++||||++.. +.++++|++|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999642 2477899999999999975
No 90
>PHA02624 large T antigen; Provisional
Probab=99.12 E-value=5.4e-11 Score=126.80 Aligned_cols=60 Identities=32% Similarity=0.538 Sum_probs=56.3
Q ss_pred CcccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhccc
Q 012301 76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138 (466)
Q Consensus 76 ~~~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~y 138 (466)
..++|++|||+++| +.+|||+|||++|++||||++ ++.++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 35799999999999 999999999999999999996 4578999999999999999999998
No 91
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.04 E-value=1.3e-10 Score=117.61 Aligned_cols=72 Identities=36% Similarity=0.621 Sum_probs=64.8
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHHHhchhhhhcccccccccCccc
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~ 148 (466)
-|+||||||+.+++..+||++||+|..++||||-+. .+-++.+++|++||+.|+|...|+.|-.||.....+
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQ 175 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQ 175 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCc
Confidence 499999999999999999999999999999999754 346789999999999999999999999999765543
No 92
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.96 E-value=6.2e-10 Score=90.00 Aligned_cols=51 Identities=41% Similarity=0.740 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCcCCcEEEEccCCCCCCCCC-CCccEEEEEEEEeccccccCC
Q 012301 295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGG-PPGDLYVYLDVEEIPGIQRDG 345 (466)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~-~~GDLiV~v~v~~~~~f~R~g 345 (466)
++++|+||+|+++|++++++|+|++...+. ..|||||+|+|..|..++.+.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~q 78 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQ 78 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 478899999999999999999999866554 799999999999998876544
No 93
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.84 E-value=5.2e-09 Score=96.47 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=55.6
Q ss_pred cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhhhhccccc
Q 012301 77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (466)
Q Consensus 77 ~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~R~~yd~ 140 (466)
.|||++|||++. .+..++++.|++|.+++|||+..... +.+.-..||+||.+|.||.+|+.|=-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 589999999985 89999999999999999999975432 34567899999999999999998853
No 94
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.1e-09 Score=102.62 Aligned_cols=73 Identities=38% Similarity=0.450 Sum_probs=63.6
Q ss_pred ccccccCcccchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHHHhchhhhhccccccc
Q 012301 70 RSVVCASGDYYATLGVPK---SASGKEIKAAYRKLARQYHPDVNK---EPGATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (466)
Q Consensus 70 ~~~~~~~~~~Y~vLgv~~---~as~~eIk~ayr~l~~~~HPD~~~---~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 142 (466)
....|...|+|.+|||+. .|++.+|.+|.++.+.+||||+.. +.+..+.|+.|+.||+||+|+.+|.+||.--
T Consensus 36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 334566789999999987 688999999999999999999973 2457889999999999999999999999843
No 95
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.1e-09 Score=103.85 Aligned_cols=105 Identities=29% Similarity=0.570 Sum_probs=80.0
Q ss_pred ecccccCcccccCcc----------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec--------
Q 012301 224 TCEVCTGTGAKMGSK----------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------- 285 (466)
Q Consensus 224 ~C~~C~GtG~~~~~~----------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C-------- 285 (466)
.|..|.|+|.....+ +..|..|+|.|..+... ..|+.|.|.+.+...+-.+.
T Consensus 145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~k----------d~C~~C~G~~~v~~kkil~v~V~~g~~~ 214 (337)
T KOG0712|consen 145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLK----------DRCKTCSGAKVVREKKILEVHVEPGMPH 214 (337)
T ss_pred CCCCCCCCCceeEEEeccccccccceeEeccCCCcccccccc----------ccCcccccchhhhhhheeeccccCCCcc
Confidence 799999999875443 67899999999875533 78999999987654321111
Q ss_pred ------cCceEE-------------------------------------------------EeeeEEEEEcCCC--CcCC
Q 012301 286 ------SGEGRI-------------------------------------------------RLKKNIKVKVPPG--VSTG 308 (466)
Q Consensus 286 ------~G~G~v-------------------------------------------------~~~~~l~V~Ip~G--~~~G 308 (466)
.|++.. .+.+.+++.++|| +.+|
T Consensus 215 ~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~ 294 (337)
T KOG0712|consen 215 GQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPG 294 (337)
T ss_pred cceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChh
Confidence 111100 2456789999999 8999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEEecc
Q 012301 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIP 339 (466)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~ 339 (466)
+++++.|+||+..... .|||||.++|+.|+
T Consensus 295 ~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 295 DTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK 324 (337)
T ss_pred HEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence 9999999999977544 99999999999987
No 96
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.79 E-value=7.5e-09 Score=94.16 Aligned_cols=53 Identities=30% Similarity=0.448 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHHhchhhhhcccccc
Q 012301 89 ASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQY 141 (466)
Q Consensus 89 as~~eIk~ayr~l~~~~HPD~~~~~------~~~~~f~~i~~Ay~vL~d~~~R~~yd~~ 141 (466)
.+..+|+++||+|++++|||+.... .+.+.|..||+||++|+||.+|+.|+--
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 4788999999999999999986432 2567899999999999999999999864
No 97
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.77 E-value=2.4e-08 Score=100.00 Aligned_cols=72 Identities=29% Similarity=0.442 Sum_probs=64.1
Q ss_pred cccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCC
Q 012301 341 IQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419 (466)
Q Consensus 341 f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~l 419 (466)
+.|+|.||++.+.|+|.||++|++++| +++|. ++|+||+|+++|++++++|+|++. |||||+|+|.-+..+
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~~f 196 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG-------GDLYLVVRLLPHPVF 196 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC-------CCEEEEEEEcCCCCe
Confidence 457899999999999999999999998 67874 689999999999999999999862 999999999877654
Q ss_pred C
Q 012301 420 S 420 (466)
Q Consensus 420 s 420 (466)
.
T Consensus 197 ~ 197 (291)
T PRK14299 197 R 197 (291)
T ss_pred E
Confidence 3
No 98
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.1e-08 Score=92.04 Aligned_cols=62 Identities=31% Similarity=0.498 Sum_probs=56.6
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhhhhc
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRA 136 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~ 136 (466)
.+.|+|+||.|.+..+.++||+.||+|++..|||+|++ +.|...|.-+..||.+|-|+..|.
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rk 114 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRK 114 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 36799999999999999999999999999999999986 467889999999999999998554
No 99
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.57 E-value=9.1e-08 Score=81.31 Aligned_cols=61 Identities=36% Similarity=0.730 Sum_probs=49.3
Q ss_pred eeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEe
Q 012301 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRL 293 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~ 293 (466)
..+.|..|+|+|. .+|+.|+|+|.+.... .+++++...|+.|+|.|+. .|..|.|.|.+..
T Consensus 40 ~~v~C~~C~GsG~------~~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~ 100 (111)
T PLN03165 40 NTQPCFPCSGTGA------QVCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR 100 (111)
T ss_pred cCCCCCCCCCCCC------cCCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence 4578999999997 3899999999987543 2345556899999999975 4999999998743
No 100
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.53 E-value=3.4e-07 Score=92.33 Aligned_cols=73 Identities=18% Similarity=0.379 Sum_probs=60.6
Q ss_pred cCCcceEEEEeeCHHhhhCCCEEEE----eccC--C--------eEEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEE
Q 012301 343 RDGIDLFSTISISYLDAIMGTVVKV----KTVE--G--------ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHL 408 (466)
Q Consensus 343 R~g~dL~~~~~Isl~eAl~G~~~~i----~tld--G--------~~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~ 408 (466)
++|.||++.+.|+|.||+.|+..+| .+++ | .++|.||+|+++|++++++|+|+|..++ ..+||||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~ 193 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENG-GPNGDLW 193 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCC-CCCccEE
Confidence 4688999999999999999996655 3343 3 3578899999999999999999997543 4689999
Q ss_pred EEEEEECCC
Q 012301 409 FTVKVTIPN 417 (466)
Q Consensus 409 I~~~V~~P~ 417 (466)
|+|+|. |.
T Consensus 194 v~i~v~-ph 201 (306)
T PRK10266 194 LVIHIA-PH 201 (306)
T ss_pred EEEEEc-CC
Confidence 999999 54
No 101
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2e-06 Score=80.80 Aligned_cols=55 Identities=33% Similarity=0.655 Sum_probs=51.1
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH-Hhchh
Q 012301 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYE-VLSDD 132 (466)
Q Consensus 78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~-vL~d~ 132 (466)
.||.+|||...|+.+|++.||.+||+++|||...+....++|.+|.+||. ||+..
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999888788899999999998 78743
No 102
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.9e-06 Score=93.77 Aligned_cols=52 Identities=38% Similarity=0.583 Sum_probs=45.6
Q ss_pred cccchhcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhc
Q 012301 77 GDYYATLGVPKSA----SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS 130 (466)
Q Consensus 77 ~~~Y~vLgv~~~a----s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~ 130 (466)
.+.|+||.|+-+- ..+.||++|++||.+|||||| |+-.++|..+|+|||.|+
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--PEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--PEGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHHH
Confidence 4789999997632 457899999999999999999 567899999999999998
No 103
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.94 E-value=1.4e-05 Score=87.07 Aligned_cols=71 Identities=55% Similarity=0.918 Sum_probs=66.4
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 147 (466)
.|||+||||+++|+.++||+|||+|+++||||++..+.+.++|++|++||++|+||.+|+.||.||..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 58999999999999999999999999999999998777888999999999999999999999999977654
No 104
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=97.91 E-value=9.5e-06 Score=75.37 Aligned_cols=48 Identities=31% Similarity=0.662 Sum_probs=39.4
Q ss_pred eeCCCCCCccEEEe--eeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEc
Q 012301 266 SVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (466)
Q Consensus 266 ~~C~~C~G~G~~~~--~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (466)
.+|+.|+|+|+++. ++|..|+|.|++....++.+++ .|+.+|++|++.
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 56777777777765 5788888888888889999999 999999999875
No 105
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.84 E-value=8.8e-06 Score=63.12 Aligned_cols=44 Identities=32% Similarity=0.919 Sum_probs=31.8
Q ss_pred eeeecccccCcccccCcc---------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCcc
Q 012301 221 HLETCEVCTGTGAKMGSK---------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 275 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~~---------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G 275 (466)
....|+.|+|+|...... ..+|+.|+|+|+++ .. .+|+.|+|.|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~----------~~C~~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK----------DPCKTCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS----------SB-SSSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC----------CCCCCCCCcC
Confidence 345899999999875432 67999999999987 22 7899999986
No 106
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=3.7e-05 Score=63.96 Aligned_cols=52 Identities=27% Similarity=0.318 Sum_probs=44.6
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchh
Q 012301 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132 (466)
Q Consensus 78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 132 (466)
..-.||||+++++.+.||+|+|+.....|||+... --.-.+||||+++|...
T Consensus 57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS---PYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS---PYLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC---HHHHHHHHHHHHHHhcc
Confidence 45679999999999999999999999999999744 34456799999999753
No 107
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.62 E-value=3.1e-05 Score=81.65 Aligned_cols=68 Identities=31% Similarity=0.736 Sum_probs=42.2
Q ss_pred eecccccCcccccCcceeecCCCCcccEEEEeee--------CCccceee-eeeCCCCCCccEEE-eeeeeeccCceEE
Q 012301 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ--------TPFGLFSQ-VSVCPSCGGEGEVI-SEYCRKCSGEGRI 291 (466)
Q Consensus 223 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~--------~~~G~~~~-~~~C~~C~G~G~~~-~~~C~~C~G~G~v 291 (466)
..|+.|+|+|.... ....|+.|+|+|..-.... ...-+|.. ..+|+.|.|+|.+. ...|..|.|.|.+
T Consensus 3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv 80 (715)
T COG1107 3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV 80 (715)
T ss_pred ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence 46888888776543 2356888888887622110 00112222 35788888888764 4788888888776
No 108
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.76 E-value=0.0011 Score=56.56 Aligned_cols=41 Identities=29% Similarity=0.776 Sum_probs=32.8
Q ss_pred ecccccCcccccCc------ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe
Q 012301 224 TCEVCTGTGAKMGS------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (466)
Q Consensus 224 ~C~~C~GtG~~~~~------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 279 (466)
.|+.|+|+|..... ...+|+.|+|+|+ ..|+.|.|.|.+.+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk---------------~~C~~C~G~G~~~~ 100 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS---------------LTCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce---------------eeCCCCCCCEEEee
Confidence 89999999976422 1568999999996 24999999998754
No 109
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0014 Score=64.67 Aligned_cols=30 Identities=37% Similarity=0.810 Sum_probs=17.1
Q ss_pred eCCCCCCccEEEeeeeeeccCceEEEeeeEEEE
Q 012301 267 VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKV 299 (466)
Q Consensus 267 ~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V 299 (466)
.|+.|.|+|. .+|.+|.|.|....-..+.|
T Consensus 247 ~C~tC~grG~---k~C~TC~gtgsll~~t~~vV 276 (406)
T KOG2813|consen 247 ECHTCKGRGK---KPCTTCSGTGSLLNYTRIVV 276 (406)
T ss_pred cCCcccCCCC---cccccccCccceeeeEEEEE
Confidence 3444444443 46778888886654444444
No 110
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.0022 Score=68.14 Aligned_cols=58 Identities=36% Similarity=0.840 Sum_probs=41.0
Q ss_pred eeecccccCcccccCcc------------------eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEee---
Q 012301 222 LETCEVCTGTGAKMGSK------------------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISE--- 280 (466)
Q Consensus 222 ~~~C~~C~GtG~~~~~~------------------~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~--- 280 (466)
...|+.|+|+|...... ..+|+.|+|+|.+... ..|+.|+|+|++..-
T Consensus 18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~-----------~~c~~c~G~gkv~~c~~c 86 (715)
T COG1107 18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVY-----------DTCPECGGTGKVLTCDIC 86 (715)
T ss_pred eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEE-----------eecccCCCceeEEeeccc
Confidence 46799999998752211 3479999999987532 689999999886531
Q ss_pred ----------eeeeccCceE
Q 012301 281 ----------YCRKCSGEGR 290 (466)
Q Consensus 281 ----------~C~~C~G~G~ 290 (466)
.|..|.-++.
T Consensus 87 G~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 87 GDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred cceecCcccccChhHhhCCc
Confidence 3888866654
No 111
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.004 Score=55.63 Aligned_cols=67 Identities=24% Similarity=0.433 Sum_probs=52.8
Q ss_pred ccCcccchhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHHHhchhhhhccccc
Q 012301 74 CASGDYYATLGVPK--SASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (466)
Q Consensus 74 ~~~~~~Y~vLgv~~--~as~~eIk~ayr~l~~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 140 (466)
....+||.++|... ...+..++.-|--..++.|||+... .-+.+.-.++++||.+|.||-+|+.|=.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34567999997754 4466667778999999999998432 2356778999999999999999998853
No 112
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.18 E-value=0.0035 Score=58.44 Aligned_cols=31 Identities=29% Similarity=0.758 Sum_probs=19.3
Q ss_pred eecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEee
Q 012301 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISE 280 (466)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~ 280 (466)
.+|+.|+|+|.+++.. .+|+.|+|+|++...
T Consensus 100 ~~C~~C~G~G~~i~~~----------~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQ----------RECDTCAGTGRFRPT 130 (186)
T ss_pred CcCCCCCCeeEEecCC----------CCCCCCCCccEEeee
Confidence 4566666666665422 467777777776543
No 113
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0046 Score=57.26 Aligned_cols=53 Identities=42% Similarity=0.552 Sum_probs=45.6
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHHHh
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVL 129 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--------~~~~~~f~~i~~Ay~vL 129 (466)
.+.|.+|++...++..+|+++|+++...+|||+-.. ..+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999997432 23678899999999753
No 114
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.027 Score=52.12 Aligned_cols=63 Identities=33% Similarity=0.536 Sum_probs=48.9
Q ss_pred ccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhhhhccccc
Q 012301 78 DYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (466)
Q Consensus 78 ~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~R~~yd~ 140 (466)
++...+|+.+.+ ..+.++..|+.+.+.||||+..... +.+.+..++.||.+|.||.+|+.|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 355555665544 3456899999999999999875422 34579999999999999999998865
No 115
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.33 E-value=0.046 Score=58.08 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 012301 86 PKSASGKEIKAAYRKLARQYHPDVNKEP 113 (466)
Q Consensus 86 ~~~as~~eIk~ayr~l~~~~HPD~~~~~ 113 (466)
..=.+.+++||||||..+..||||.+..
T Consensus 397 tDLVtp~~VKKaYrKA~L~VHPDKlqq~ 424 (453)
T KOG0431|consen 397 TDLVTPAQVKKAYRKAVLCVHPDKLQQK 424 (453)
T ss_pred hhccCHHHHHHHHHhhhheeCcccccCC
Confidence 3345899999999999999999998754
No 116
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.026 Score=56.03 Aligned_cols=59 Identities=25% Similarity=0.619 Sum_probs=42.6
Q ss_pred eeecccccCcccccC--cceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEE
Q 012301 222 LETCEVCTGTGAKMG--SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIR 292 (466)
Q Consensus 222 ~~~C~~C~GtG~~~~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~ 292 (466)
...|+.|+|.|.... ..+..|..|-|-- . -..-+...|..|+|+|. ..|.+|.|.|...
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~---~------~k~gt~~~C~~C~G~G~---~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVP---P------PKIGTHDLCYMCHGRGI---KECHTCKGRGKKP 258 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCC---C------CCCCccchhhhccCCCc---ccCCcccCCCCcc
Confidence 578999999986322 3478899998811 0 01123378999999996 5799999999873
No 117
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.1 Score=52.28 Aligned_cols=98 Identities=23% Similarity=0.405 Sum_probs=59.0
Q ss_pred cccceeeeEeeeeeeecccccCcccccC-----cceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeee
Q 012301 209 SIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR 283 (466)
Q Consensus 209 ~~~G~~~~v~~~~~~~C~~C~GtG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~ 283 (466)
...|.. .........|..|.|+|.... ....+|..|+|.|.+.. ..|..|.|.|.+...+-.
T Consensus 169 t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~g~~~v~~~k~i 235 (288)
T KOG0715|consen 169 TCFGSG-AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACSGAGQVRRAKDI 235 (288)
T ss_pred cccCcC-cccccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhhcchhhhhheeE
Confidence 334443 445567789999999993322 12337999999999876 459999999976554444
Q ss_pred eccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCC
Q 012301 284 KCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGP 321 (466)
Q Consensus 284 ~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~ 321 (466)
.....+.+....+|++..+... --.+++.=..++..
T Consensus 236 ~i~~~~g~~~~~~l~~~~~~~~--~l~v~~~v~~~~~~ 271 (288)
T KOG0715|consen 236 MIVLPAGVRSADTLRFAGHGND--DLFVRLIVAKSPSF 271 (288)
T ss_pred EeecCcccccccEEEEecCCcc--eEEEEEEeccCccc
Confidence 4444444444444555443332 33344444444433
No 118
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=91.27 E-value=0.45 Score=41.72 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=41.4
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhh
Q 012301 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135 (466)
Q Consensus 78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R 135 (466)
.-..||+|++..+.++|.+.|.+|-...+|++. ++.-.=.+|..|.|.|..+.+.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~~ 113 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELKE 113 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999976 5666667788999998766543
No 119
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=80.94 E-value=3.4 Score=38.96 Aligned_cols=38 Identities=37% Similarity=0.460 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhc
Q 012301 86 PKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS 130 (466)
Q Consensus 86 ~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~ 130 (466)
+++||.|||.+|+.++..+|--| ++.-.+|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHH
Confidence 57999999999999999988433 556778999998654
No 120
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.93 E-value=1.8 Score=42.53 Aligned_cols=46 Identities=30% Similarity=0.535 Sum_probs=30.8
Q ss_pred eecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEE
Q 012301 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI 278 (466)
Q Consensus 223 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 278 (466)
..|..|.|.+. .+|..|+|.-+++... .-......|..|+-.|-+.
T Consensus 230 ~~C~~CGg~rF------lpC~~C~GS~kv~~~~----~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARF------LPCSNCHGSCKVHEEE----EDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcce------EecCCCCCceeeeeec----cCCCcEEECcccCCCCcee
Confidence 57888888765 5688888888776521 1111126788888888764
No 121
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=79.60 E-value=1.7 Score=44.36 Aligned_cols=52 Identities=37% Similarity=0.553 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC-----CcchHHHHHHHHHHHHHhchhhhhccccc
Q 012301 89 ASGKEIKAAYRKLARQYHPDVNK-----EPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (466)
Q Consensus 89 as~~eIk~ayr~l~~~~HPD~~~-----~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 140 (466)
++..+|..+|+..++..||++.. .....+.|++|.+||++|.+..+|..+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 57789999999999999999863 22456789999999999998666555554
No 122
>PF13446 RPT: A repeated domain in UCH-protein
Probab=79.11 E-value=4.4 Score=30.58 Aligned_cols=44 Identities=18% Similarity=0.380 Sum_probs=33.0
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhch
Q 012301 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSD 131 (466)
Q Consensus 78 ~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d 131 (466)
+.|+.|||+++.+.+.|-.+|+.... -.| .....+.+|..++.+
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P---------~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN-DDP---------SQKDTLREALRVIAE 49 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH-cCh---------HhHHHHHHHHHHHHH
Confidence 57999999999999999999998886 111 234455667766654
No 123
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.27 E-value=2 Score=42.33 Aligned_cols=38 Identities=32% Similarity=0.814 Sum_probs=31.3
Q ss_pred eecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe--------eeeeeccCceEEE
Q 012301 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--------EYCRKCSGEGRIR 292 (466)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~--------~~C~~C~G~G~v~ 292 (466)
..|..|+|.+. .+|..|+|.-++.. ..|..|+=.|.++
T Consensus 230 ~~C~~CGg~rF---------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARF---------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcce---------------EecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 47999999886 47999999998876 3899998777653
No 124
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=74.91 E-value=3.5 Score=37.12 Aligned_cols=46 Identities=35% Similarity=0.693 Sum_probs=28.7
Q ss_pred eecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEE
Q 012301 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 277 (466)
Q Consensus 223 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 277 (466)
..|..|.|.+. .+|..|+|.-+++.......+. ...|+.|+-.|-+
T Consensus 100 ~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~~~~~---~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARF------VPCSECNGSCKVFAENATAAGG---FLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCe------EECCCCCCcceEEeccCccccc---EEECCCCCccccc
Confidence 46888888765 5788888888776533111111 1567777766643
No 125
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=71.04 E-value=2.9 Score=49.13 Aligned_cols=66 Identities=27% Similarity=0.552 Sum_probs=40.9
Q ss_pred eccccc--------cceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccE
Q 012301 205 EFSESI--------FGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE 276 (466)
Q Consensus 205 tl~e~~--------~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~ 276 (466)
++.+|+ .++..++.+. ...|+.|...... ..|+.|+..-.. ...|+.|+..=.
T Consensus 643 ~I~kAa~~a~~~~d~~G~ieVEV~-~rkCPkCG~~t~~-----~fCP~CGs~te~-------------vy~CPsCGaev~ 703 (1337)
T PRK14714 643 DVAKAAKHAPDMSDEGGVIEVEVG-RRRCPSCGTETYE-----NRCPDCGTHTEP-------------VYVCPDCGAEVP 703 (1337)
T ss_pred cHHHHHHhhhhccccCCeEEEEEE-EEECCCCCCcccc-----ccCcccCCcCCC-------------ceeCccCCCccC
Confidence 456666 4555555554 5789999875432 489999876321 147999987411
Q ss_pred ---EEeeeeeeccCce
Q 012301 277 ---VISEYCRKCSGEG 289 (466)
Q Consensus 277 ---~~~~~C~~C~G~G 289 (466)
.....|+.|...-
T Consensus 704 ~des~a~~CP~CGtpl 719 (1337)
T PRK14714 704 PDESGRVECPRCDVEL 719 (1337)
T ss_pred CCccccccCCCCCCcc
Confidence 0133799996544
No 126
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=70.80 E-value=15 Score=28.88 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=32.9
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKE 121 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~ 121 (466)
|++|.-+++|+++-|+..||+.|-++.+++..--..+.....+.|..
T Consensus 1 MCRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~ 47 (88)
T COG5552 1 MCRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEA 47 (88)
T ss_pred CccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHH
Confidence 45677789999999999999999888888764333332233344443
No 127
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.53 E-value=2.6 Score=48.88 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=12.2
Q ss_pred EECCC-CCCHHHHHHHHHHHhh
Q 012301 413 VTIPN-RISAKERELLEELASL 433 (466)
Q Consensus 413 V~~P~-~ls~~~~~ll~~l~~~ 433 (466)
++=|. .|+...++.|.+++..
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~ 876 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQR 876 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHH
Confidence 44453 4777766666555543
No 128
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=68.99 E-value=4 Score=36.75 Aligned_cols=36 Identities=31% Similarity=0.833 Sum_probs=27.6
Q ss_pred eecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe---------eeeeeccCceE
Q 012301 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS---------EYCRKCSGEGR 290 (466)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~---------~~C~~C~G~G~ 290 (466)
..|..|+|.+. .+|..|+|.-++.. ..|..|+=.|.
T Consensus 100 ~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl 144 (147)
T cd03031 100 GVCEGCGGARF---------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGL 144 (147)
T ss_pred CCCCCCCCcCe---------------EECCCCCCcceEEeccCcccccEEECCCCCcccc
Confidence 46999999886 48999999987743 27888876554
No 129
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=65.58 E-value=30 Score=32.58 Aligned_cols=75 Identities=25% Similarity=0.535 Sum_probs=38.4
Q ss_pred ecCCCCcccEEE-Eeee-CC-ccce-eeeeeCCCCCCccEEEe------ee--eeeccCceE-----E------EeeeEE
Q 012301 241 ICSTCGGRGQVM-RTDQ-TP-FGLF-SQVSVCPSCGGEGEVIS------EY--CRKCSGEGR-----I------RLKKNI 297 (466)
Q Consensus 241 ~C~~C~G~G~~~-~~~~-~~-~G~~-~~~~~C~~C~G~G~~~~------~~--C~~C~G~G~-----v------~~~~~l 297 (466)
.|+.|++.|... .... +| |+-+ .+...|+.|+=+-.-+. .+ -.++..... + ..--++
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~g~~~p~r~~l~V~~~~DL~r~VvkS~tati~IPEl 81 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEPKRYILKIDDEADLNRRVVKSESATIRIPEL 81 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccceeEECCCCCCEEEEEEECChhcccceEEEcCCcEEEccce
Confidence 477777766642 2223 33 4433 34578999976643221 11 111111111 1 112346
Q ss_pred EEEcCCC-CcCCcEEEEcc
Q 012301 298 KVKVPPG-VSTGSILRVVG 315 (466)
Q Consensus 298 ~V~Ip~G-~~~G~~i~l~g 315 (466)
.+.|||| +..|..-.|.|
T Consensus 82 ~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 82 GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred EEEECCCccCCceEEeeHh
Confidence 7788888 67887777754
No 130
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=63.32 E-value=32 Score=27.32 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=34.1
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKE 121 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~ 121 (466)
|++|--.+.|+.+.||.+||..|-.+.++|..=-..+.....+.|..
T Consensus 1 MCRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 1 MCRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred CCcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 45566677789999999999999999998876555444444444543
No 131
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=61.39 E-value=37 Score=31.01 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=14.0
Q ss_pred eEEEEEcCCCCcCCcEEEEcc
Q 012301 295 KNIKVKVPPGVSTGSILRVVG 315 (466)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~g 315 (466)
-++.+.||+|...|..-.+.|
T Consensus 80 PEl~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 80 PELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeeEEecCCCCCcEEEehHH
Confidence 356677777777776666654
No 132
>PRK04023 DNA polymerase II large subunit; Validated
Probab=58.90 E-value=4.8 Score=46.32 Aligned_cols=64 Identities=28% Similarity=0.595 Sum_probs=40.5
Q ss_pred ecccccc-ceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeee
Q 012301 205 EFSESIF-GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR 283 (466)
Q Consensus 205 tl~e~~~-G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~ 283 (466)
++.+|+. +...++.+. ...|+.|.-.+ ....|+.|+..-..+ ..|+.|.-... ...|+
T Consensus 609 ~i~~A~~~~g~~eVEVg-~RfCpsCG~~t-----~~frCP~CG~~Te~i-------------~fCP~CG~~~~--~y~CP 667 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIG-RRKCPSCGKET-----FYRRCPFCGTHTEPV-------------YRCPRCGIEVE--EDECE 667 (1121)
T ss_pred cHHHHHhcCCceeeccc-CccCCCCCCcC-----CcccCCCCCCCCCcc-------------eeCccccCcCC--CCcCC
Confidence 4556666 555555543 35799997664 246899998762211 47999944432 35699
Q ss_pred eccCce
Q 012301 284 KCSGEG 289 (466)
Q Consensus 284 ~C~G~G 289 (466)
.|.-+-
T Consensus 668 KCG~El 673 (1121)
T PRK04023 668 KCGREP 673 (1121)
T ss_pred CCCCCC
Confidence 995544
No 133
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=58.45 E-value=8.8 Score=44.79 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=6.0
Q ss_pred cCCCCcccEEE
Q 012301 242 CSTCGGRGQVM 252 (466)
Q Consensus 242 C~~C~G~G~~~ 252 (466)
|+.|.|.|.+.
T Consensus 741 C~~C~G~G~~~ 751 (943)
T PRK00349 741 CEACQGDGVIK 751 (943)
T ss_pred CCcccccceEE
Confidence 55555555544
No 134
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=54.65 E-value=4.1 Score=46.07 Aligned_cols=50 Identities=32% Similarity=0.710 Sum_probs=0.0
Q ss_pred eeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEE
Q 012301 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (466)
Q Consensus 222 ~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v 291 (466)
...|+.|.-.+. ...|+.|+..-..+ -.|+.|+-. +..+.|++|.....-
T Consensus 655 ~r~Cp~Cg~~t~-----~~~Cp~CG~~T~~~-------------~~Cp~C~~~--~~~~~C~~C~~~~~~ 704 (900)
T PF03833_consen 655 RRRCPKCGKETF-----YNRCPECGSHTEPV-------------YVCPDCGIE--VEEDECPKCGRETTS 704 (900)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccCcccCCcch-----hhcCcccCCccccc-------------eeccccccc--cCccccccccccCcc
Confidence 357999975543 46799997754322 479999753 345689999766443
No 135
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=54.53 E-value=13 Score=37.58 Aligned_cols=10 Identities=30% Similarity=0.730 Sum_probs=6.1
Q ss_pred eeecccccCc
Q 012301 222 LETCEVCTGT 231 (466)
Q Consensus 222 ~~~C~~C~Gt 231 (466)
...||.|.+.
T Consensus 187 ~~~CPvCGs~ 196 (309)
T PRK03564 187 RQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCc
Confidence 4567777654
No 136
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=54.28 E-value=7.4 Score=48.17 Aligned_cols=31 Identities=29% Similarity=0.614 Sum_probs=14.3
Q ss_pred cCCCCcccEEEEeeeCCccceeee-eeCCCCCCccE
Q 012301 242 CSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGE 276 (466)
Q Consensus 242 C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~ 276 (466)
|+.|.|.|.+... +.++-.. .+|+.|+|+.+
T Consensus 1610 C~~C~G~G~i~i~----m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1610 CSDCWGLGYQWID----RAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCccCceEEEe----cccCCCcccCCCCCCCcCC
Confidence 6666666654321 1112221 45666655544
No 137
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=53.42 E-value=20 Score=26.24 Aligned_cols=37 Identities=32% Similarity=0.746 Sum_probs=17.8
Q ss_pred eecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEE
Q 012301 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 277 (466)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 277 (466)
.+||-|+|....++......+..- ...|..|+..|..
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~-~~~C~~Cga~~~~ 38 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSH-YFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEE-EEECCCCCCCccc
Confidence 467777777764431111111000 1267777766543
No 138
>PHA02576 3 tail completion and sheath stabilizer protein; Provisional
Probab=52.32 E-value=45 Score=30.94 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=30.3
Q ss_pred CCCCcEEEEEEEECCCCCCHHHHHHHH--HHHhhcCCCCCCCCCC-CcccchhhhhHhhhhcccC
Q 012301 402 SIRGDHLFTVKVTIPNRISAKERELLE--ELASLRNTTGSRTRTR-PKTQAATKRWIHAVHQNKN 463 (466)
Q Consensus 402 ~~~GDL~I~~~V~~P~~ls~~~~~ll~--~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 463 (466)
..+++|.|+|-|+ ++-+..++ +.....++.....++. +...|. ....|..+.|+|
T Consensus 62 ~efDpl~i~FivD------ed~rny~e~y~Wm~si~d~~~~~~~~~~~~~~~-d~~LhiLdn~~~ 119 (177)
T PHA02576 62 VEFDPLIVRFLVD------EELRSYLEVYKWMLSTNDYNTGNSTAWDKSQPE-AITLHILDNSKT 119 (177)
T ss_pred eecCCEEEEEEEc------HHHHHHHHHHHHHHHhcccccCCccccCccCCc-ceEEEeecCCCC
Confidence 3589999999986 33344443 4443333333222222 333344 367777777765
No 139
>PRK05978 hypothetical protein; Provisional
Probab=51.00 E-value=6.9 Score=35.27 Aligned_cols=25 Identities=36% Similarity=1.093 Sum_probs=13.9
Q ss_pred ecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301 241 ICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (466)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 272 (466)
.||.| |.|+..+ |++.....|+.|+
T Consensus 35 rCP~C-G~G~LF~------g~Lkv~~~C~~CG 59 (148)
T PRK05978 35 RCPAC-GEGKLFR------AFLKPVDHCAACG 59 (148)
T ss_pred cCCCC-CCCcccc------cccccCCCccccC
Confidence 46666 4555443 3444456677774
No 140
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.69 E-value=7 Score=45.48 Aligned_cols=27 Identities=30% Similarity=0.676 Sum_probs=19.1
Q ss_pred eCCCCCCccEEEe---------eeeeeccCceEEEe
Q 012301 267 VCPSCGGEGEVIS---------EYCRKCSGEGRIRL 293 (466)
Q Consensus 267 ~C~~C~G~G~~~~---------~~C~~C~G~G~v~~ 293 (466)
.|+.|.|.|++.. ..|..|+|+.+..+
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 773 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE 773 (924)
T ss_pred CCCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence 4888888887753 37888888776543
No 141
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=49.53 E-value=50 Score=30.24 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=13.2
Q ss_pred EEEEEcCCCC-cCCcEEEEcc
Q 012301 296 NIKVKVPPGV-STGSILRVVG 315 (466)
Q Consensus 296 ~l~V~Ip~G~-~~G~~i~l~g 315 (466)
++.+.||+|. ..|..=++.|
T Consensus 78 El~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 78 ELGIKIEPGPASQGYISNIEG 98 (163)
T ss_pred ceeEEecCCCcCCceEEehHh
Confidence 4677788876 5676665644
No 142
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=49.40 E-value=4.5 Score=33.65 Aligned_cols=36 Identities=33% Similarity=0.841 Sum_probs=18.0
Q ss_pred ecCCCCcccEEEEeeeC--CccceeeeeeCCCCCCccEE
Q 012301 241 ICSTCGGRGQVMRTDQT--PFGLFSQVSVCPSCGGEGEV 277 (466)
Q Consensus 241 ~C~~C~G~G~~~~~~~~--~~G~~~~~~~C~~C~G~G~~ 277 (466)
.|..|+|.|.++-..++ .+|+ .-...|+.|.|.|+.
T Consensus 7 ~c~~c~g~g~al~~~~s~~~~G~-pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSKAQFGV-PVFKDCERCGGRGYS 44 (95)
T ss_pred CcCccCCcceeccHHHhHhccCC-chhhhhhhhcCCCCC
Confidence 45566666654432211 1121 112568888877764
No 143
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=48.63 E-value=12 Score=43.73 Aligned_cols=28 Identities=29% Similarity=0.644 Sum_probs=22.9
Q ss_pred eCCCCCCccEEEe---------eeeeeccCceEEEee
Q 012301 267 VCPSCGGEGEVIS---------EYCRKCSGEGRIRLK 294 (466)
Q Consensus 267 ~C~~C~G~G~~~~---------~~C~~C~G~G~v~~~ 294 (466)
.|+.|.|.|.+.. ..|..|+|.....+.
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 776 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRET 776 (943)
T ss_pred CCCcccccceEEEEeccCCCccccCccccCccccccc
Confidence 5999999999864 389999999876543
No 144
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=47.43 E-value=54 Score=28.23 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=5.4
Q ss_pred eeeeccccc
Q 012301 221 HLETCEVCT 229 (466)
Q Consensus 221 ~~~~C~~C~ 229 (466)
....|..|+
T Consensus 70 ~~~~C~~Cg 78 (117)
T PRK00564 70 VELECKDCS 78 (117)
T ss_pred CEEEhhhCC
Confidence 345677775
No 145
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=47.41 E-value=21 Score=40.65 Aligned_cols=32 Identities=25% Similarity=0.591 Sum_probs=16.2
Q ss_pred ecCCCCcccEEEEeeeCCccceeee-eeCCCCCCccE
Q 012301 241 ICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGE 276 (466)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~ 276 (466)
.|..|.|.|.+.... .++-.. .+|+.|+|+-+
T Consensus 732 RCe~C~GdG~ikIeM----~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 732 RCEACQGDGVIKIEM----HFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred CCccccCCceEEEEe----ccCCCceeeCCCcCCccc
Confidence 566666666554322 222222 56666666554
No 146
>PRK14051 negative regulator GrlR; Provisional
Probab=46.40 E-value=62 Score=27.43 Aligned_cols=71 Identities=15% Similarity=0.063 Sum_probs=41.6
Q ss_pred ccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEe-ccCCeEEEEeCCCCccCcEEEEccCCCCC
Q 012301 327 GDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVK-TVEGISELQVPPGTQPGDVLVLAKKGAPK 397 (466)
Q Consensus 327 GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~-tldG~~~v~i~~g~~~g~~~~i~g~GmP~ 397 (466)
-||++++.-.-|+..+--+-+--+.+.|+-+-.-.|+.+.+. +..|..+|.|....+-=..+.|++-|||.
T Consensus 48 ~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~~HV~~Nekl~vdv~akFI~~LvI~~~~~~~ 119 (123)
T PRK14051 48 EDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLHCHVRGNEKLFVDVYAKFIEPLVIKNTGMPQ 119 (123)
T ss_pred ceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEEEEEcCCcEEEEEEeeeeeeeeEEccCCCcc
Confidence 566777666544444433333334555553333344445544 45666567776665555679999999995
No 147
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=42.88 E-value=14 Score=19.46 Aligned_cols=13 Identities=54% Similarity=0.871 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhc
Q 012301 118 KFKEISAAYEVLS 130 (466)
Q Consensus 118 ~f~~i~~Ay~vL~ 130 (466)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5788889998774
No 148
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=42.36 E-value=39 Score=25.59 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301 410 TVKVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 410 ~~~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
..+..||.+||++||..+..++....
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lG 42 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLG 42 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcC
Confidence 57789999999999999999987655
No 149
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=41.72 E-value=20 Score=40.77 Aligned_cols=33 Identities=33% Similarity=0.762 Sum_probs=24.4
Q ss_pred eeCCCCCCccEEEee---------eeeeccCceEEEeeeEEEEE
Q 012301 266 SVCPSCGGEGEVISE---------YCRKCSGEGRIRLKKNIKVK 300 (466)
Q Consensus 266 ~~C~~C~G~G~~~~~---------~C~~C~G~G~v~~~~~l~V~ 300 (466)
-.|..|.|.|.+.-+ .|..|+|+.+-. .+++|+
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~--EtLev~ 772 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNR--ETLEVK 772 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccccc--ceEEEE
Confidence 469999999987543 899999987653 345544
No 150
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=40.52 E-value=9.8 Score=31.63 Aligned_cols=29 Identities=41% Similarity=1.050 Sum_probs=20.9
Q ss_pred eecccccCcccccCcc----------eeecCCCCcccEE
Q 012301 223 ETCEVCTGTGAKMGSK----------MRICSTCGGRGQV 251 (466)
Q Consensus 223 ~~C~~C~GtG~~~~~~----------~~~C~~C~G~G~~ 251 (466)
..|..|+|.|...+.. -..|..|+|.|..
T Consensus 6 ~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCC
Confidence 3577888888654432 4679999999965
No 151
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=39.77 E-value=30 Score=35.05 Aligned_cols=9 Identities=22% Similarity=0.763 Sum_probs=5.5
Q ss_pred eecccccCc
Q 012301 223 ETCEVCTGT 231 (466)
Q Consensus 223 ~~C~~C~Gt 231 (466)
..||.|.+.
T Consensus 185 ~~CPvCGs~ 193 (305)
T TIGR01562 185 TLCPACGSP 193 (305)
T ss_pred CcCCCCCCh
Confidence 467777643
No 152
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=39.28 E-value=55 Score=28.06 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCC-c----chHHHHHHHHHHHHHhch
Q 012301 87 KSASGKEIKAAYRKLARQYHPDVNKE-P----GATEKFKEISAAYEVLSD 131 (466)
Q Consensus 87 ~~as~~eIk~ayr~l~~~~HPD~~~~-~----~~~~~f~~i~~Ay~vL~d 131 (466)
+..+..+++.|.|.+-++.|||.-.+ | ..++-++.++.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 34567889999999999999996432 2 234557777766666653
No 153
>PF14353 CpXC: CpXC protein
Probab=39.01 E-value=16 Score=31.66 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=8.4
Q ss_pred eeCCCCCCccEE
Q 012301 266 SVCPSCGGEGEV 277 (466)
Q Consensus 266 ~~C~~C~G~G~~ 277 (466)
.+|+.|+....+
T Consensus 39 ~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 39 FTCPSCGHKFRL 50 (128)
T ss_pred EECCCCCCceec
Confidence 578888776654
No 154
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=38.46 E-value=16 Score=31.09 Aligned_cols=23 Identities=22% Similarity=0.618 Sum_probs=10.9
Q ss_pred eecccccCcccccCcceeecCCC
Q 012301 223 ETCEVCTGTGAKMGSKMRICSTC 245 (466)
Q Consensus 223 ~~C~~C~GtG~~~~~~~~~C~~C 245 (466)
.+|+.|.-.-.-....+.+||.|
T Consensus 10 R~Cp~CG~kFYDLnk~PivCP~C 32 (108)
T PF09538_consen 10 RTCPSCGAKFYDLNKDPIVCPKC 32 (108)
T ss_pred ccCCCCcchhccCCCCCccCCCC
Confidence 45555544433333344455555
No 155
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=37.85 E-value=22 Score=40.24 Aligned_cols=51 Identities=25% Similarity=0.565 Sum_probs=34.8
Q ss_pred eeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCc
Q 012301 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 288 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 288 (466)
....|..|.- ...|+.|...=..-+ ......|..|+-. ..+...|+.|.+.
T Consensus 434 ~~l~C~~Cg~--------v~~Cp~Cd~~lt~H~--------~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 434 PLLLCRDCGY--------IAECPNCDSPLTLHK--------ATGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred ceeecccCCC--------cccCCCCCcceEEec--------CCCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 3578999964 468999987522111 1123689999877 5566899999766
No 156
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=37.80 E-value=62 Score=27.67 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=5.5
Q ss_pred eeeecccccC
Q 012301 221 HLETCEVCTG 230 (466)
Q Consensus 221 ~~~~C~~C~G 230 (466)
....|..|+.
T Consensus 69 ~~~~C~~Cg~ 78 (113)
T PRK12380 69 AQAWCWDCSQ 78 (113)
T ss_pred cEEEcccCCC
Confidence 3455666653
No 157
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=37.79 E-value=37 Score=25.14 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=18.6
Q ss_pred CCCcEEEEEEEECCCC--CCHHHHHH
Q 012301 403 IRGDHLFTVKVTIPNR--ISAKEREL 426 (466)
Q Consensus 403 ~~GDL~I~~~V~~P~~--ls~~~~~l 426 (466)
..||+.|-|+|.+|+- ||.++-+.
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea 51 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEA 51 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHH
Confidence 4699999999999995 55555443
No 158
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=35.26 E-value=19 Score=40.16 Aligned_cols=48 Identities=29% Similarity=0.637 Sum_probs=30.4
Q ss_pred eecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccC
Q 012301 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSG 287 (466)
Q Consensus 223 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G 287 (466)
..|+.|+.. .....+-|+.|+..-. ...|+.|+-.=..-...|..|..
T Consensus 2 ~~Cp~Cg~~---n~~~akFC~~CG~~l~--------------~~~Cp~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFE---NPNNNRFCQKCGTSLT--------------HKPCPQCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCc---CCCCCccccccCCCCC--------------CCcCCCCCCCCCcccccccccCC
Confidence 368888643 2333467999954321 14699997765555578888843
No 159
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=34.04 E-value=28 Score=23.88 Aligned_cols=8 Identities=88% Similarity=2.075 Sum_probs=5.5
Q ss_pred eeCCCCCC
Q 012301 266 SVCPSCGG 273 (466)
Q Consensus 266 ~~C~~C~G 273 (466)
..|+.|+|
T Consensus 20 d~C~~C~G 27 (41)
T PF13453_consen 20 DVCPSCGG 27 (41)
T ss_pred EECCCCCe
Confidence 56777765
No 160
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=33.68 E-value=57 Score=28.49 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=15.0
Q ss_pred eEEEEEcCCCCcCCcEEEEccC
Q 012301 295 KNIKVKVPPGVSTGSILRVVGE 316 (466)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~g~ 316 (466)
.++++.-+.+.+.||.+.+.-+
T Consensus 42 ~~~~~~~~~~~~~GD~V~v~i~ 63 (135)
T PF04246_consen 42 ITFRAPNPIGAKVGDRVEVEIP 63 (135)
T ss_pred EEEEecCCCCCCCCCEEEEEec
Confidence 4556666678888888777543
No 161
>PRK14873 primosome assembly protein PriA; Provisional
Probab=33.59 E-value=33 Score=38.55 Aligned_cols=51 Identities=20% Similarity=0.473 Sum_probs=33.8
Q ss_pred eeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCce
Q 012301 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEG 289 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G 289 (466)
....|..|.- ...|+.|++.=..-+. ...-.|..|+-.- ....|+.|.+.-
T Consensus 382 p~l~C~~Cg~--------~~~C~~C~~~L~~h~~--------~~~l~Ch~CG~~~--~p~~Cp~Cgs~~ 432 (665)
T PRK14873 382 PSLACARCRT--------PARCRHCTGPLGLPSA--------GGTPRCRWCGRAA--PDWRCPRCGSDR 432 (665)
T ss_pred CeeEhhhCcC--------eeECCCCCCceeEecC--------CCeeECCCCcCCC--cCccCCCCcCCc
Confidence 3468999963 4789999875332111 1125799998653 477999997654
No 162
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=33.58 E-value=17 Score=35.28 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=6.5
Q ss_pred CcEEEEEEEE
Q 012301 405 GDHLFTVKVT 414 (466)
Q Consensus 405 GDL~I~~~V~ 414 (466)
.+|+|.+++.
T Consensus 202 H~i~l~~Q~T 211 (238)
T PF07092_consen 202 HNIVLHMQGT 211 (238)
T ss_pred EEEEEEEEEE
Confidence 6777777543
No 163
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=32.32 E-value=35 Score=22.57 Aligned_cols=12 Identities=58% Similarity=1.317 Sum_probs=7.3
Q ss_pred eecCCCCcccEE
Q 012301 240 RICSTCGGRGQV 251 (466)
Q Consensus 240 ~~C~~C~G~G~~ 251 (466)
..|..|++.|.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 456666666654
No 164
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=31.82 E-value=84 Score=26.90 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=5.0
Q ss_pred eeeeccccc
Q 012301 221 HLETCEVCT 229 (466)
Q Consensus 221 ~~~~C~~C~ 229 (466)
....|..|+
T Consensus 69 ~~~~C~~Cg 77 (114)
T PRK03681 69 AECWCETCQ 77 (114)
T ss_pred cEEEcccCC
Confidence 344566665
No 165
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=31.79 E-value=67 Score=27.38 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=11.3
Q ss_pred eeeecccccCcccccCcceeecCCCCccc
Q 012301 221 HLETCEVCTGTGAKMGSKMRICSTCGGRG 249 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~~~~~C~~C~G~G 249 (466)
-...|..|+-........ ..||.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~-~~CP~Cgs~~ 96 (113)
T PF01155_consen 69 ARARCRDCGHEFEPDEFD-FSCPRCGSPD 96 (113)
T ss_dssp -EEEETTTS-EEECHHCC-HH-SSSSSS-
T ss_pred CcEECCCCCCEEecCCCC-CCCcCCcCCC
Confidence 345677776544322211 3355555544
No 166
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.12 E-value=1.2e+02 Score=25.96 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=4.5
Q ss_pred eeeccccc
Q 012301 222 LETCEVCT 229 (466)
Q Consensus 222 ~~~C~~C~ 229 (466)
...|..|+
T Consensus 70 ~~~C~~Cg 77 (115)
T TIGR00100 70 ECECEDCS 77 (115)
T ss_pred EEEcccCC
Confidence 34566665
No 167
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=30.42 E-value=54 Score=20.71 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhCC
Q 012301 91 GKEIKAAYRKLARQYHP 107 (466)
Q Consensus 91 ~~eIk~ayr~l~~~~HP 107 (466)
.++.|.+-|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47789999999999994
No 168
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=30.19 E-value=47 Score=29.87 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.1
Q ss_pred eeCCCCCCccEEE
Q 012301 266 SVCPSCGGEGEVI 278 (466)
Q Consensus 266 ~~C~~C~G~G~~~ 278 (466)
.+|+.|++..+..
T Consensus 131 ~~Cp~C~~~~F~R 143 (146)
T PF07295_consen 131 PPCPKCGHTEFTR 143 (146)
T ss_pred CCCCCCCCCeeee
Confidence 5788888776653
No 169
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=29.68 E-value=28 Score=33.89 Aligned_cols=14 Identities=43% Similarity=1.004 Sum_probs=8.5
Q ss_pred eecCCCCcccEEEE
Q 012301 240 RICSTCGGRGQVMR 253 (466)
Q Consensus 240 ~~C~~C~G~G~~~~ 253 (466)
.+||+|+|+|++-+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 46666666666543
No 170
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=29.59 E-value=19 Score=44.87 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=22.1
Q ss_pred eCCCCCCccEEEee---------eeeeccCceEEEe
Q 012301 267 VCPSCGGEGEVISE---------YCRKCSGEGRIRL 293 (466)
Q Consensus 267 ~C~~C~G~G~~~~~---------~C~~C~G~G~v~~ 293 (466)
.|+.|.|.|.+..+ .|..|+|+.+-.+
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e 1644 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPL 1644 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCcCCCHH
Confidence 59999999987543 8999999887644
No 171
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=29.05 E-value=30 Score=30.26 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=12.3
Q ss_pred eeecccccCcccccCcceeecCCCC
Q 012301 222 LETCEVCTGTGAKMGSKMRICSTCG 246 (466)
Q Consensus 222 ~~~C~~C~GtG~~~~~~~~~C~~C~ 246 (466)
+.+|+.|.-.-.-....+.+|+.|+
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg 33 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTG 33 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcC
Confidence 3456666544443434455555553
No 172
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=28.43 E-value=1.8e+02 Score=27.46 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=7.7
Q ss_pred eeCCCCCCccEEE
Q 012301 266 SVCPSCGGEGEVI 278 (466)
Q Consensus 266 ~~C~~C~G~G~~~ 278 (466)
..|..|+..+-+.
T Consensus 120 l~C~aCGa~~~v~ 132 (201)
T PRK12336 120 LRCDACGAHRPVK 132 (201)
T ss_pred EEcccCCCCcccc
Confidence 4566666665543
No 173
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=27.25 E-value=90 Score=25.51 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=23.6
Q ss_pred EEEEEEEECC-CCCCHHHHHHHHHHHhh
Q 012301 407 HLFTVKVTIP-NRISAKERELLEELASL 433 (466)
Q Consensus 407 L~I~~~V~~P-~~ls~~~~~ll~~l~~~ 433 (466)
.+.-++|+.| .+|+++|++-|+.|.+.
T Consensus 62 ~~~~iEvK~p~~~ls~~Q~~~~~~l~~~ 89 (100)
T PF08774_consen 62 IFLFIEVKGPGDRLSPNQKEWIDKLREA 89 (100)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHC
Confidence 5788889999 57999999999999876
No 174
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=26.01 E-value=45 Score=22.46 Aligned_cols=7 Identities=57% Similarity=1.630 Sum_probs=4.0
Q ss_pred eeCCCCC
Q 012301 266 SVCPSCG 272 (466)
Q Consensus 266 ~~C~~C~ 272 (466)
..|+.|+
T Consensus 26 vrC~~C~ 32 (37)
T PF13719_consen 26 VRCPKCG 32 (37)
T ss_pred EECCCCC
Confidence 4566664
No 175
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=25.86 E-value=32 Score=31.62 Aligned_cols=26 Identities=35% Similarity=0.751 Sum_probs=15.2
Q ss_pred eecccccCcccccCcceeecCCCCcccEEE
Q 012301 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252 (466)
Q Consensus 223 ~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~ 252 (466)
..|..|.+.-.+. ..||.|++.|..+
T Consensus 163 ilCtvCe~r~w~g----~~CPKCGr~G~pi 188 (200)
T PF12387_consen 163 ILCTVCEGREWKG----GNCPKCGRHGKPI 188 (200)
T ss_pred EEEeeeecCccCC----CCCCcccCCCCCe
Confidence 4677777654432 3477776666543
No 176
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=25.47 E-value=45 Score=23.16 Aligned_cols=6 Identities=50% Similarity=1.774 Sum_probs=3.4
Q ss_pred eCCCCC
Q 012301 267 VCPSCG 272 (466)
Q Consensus 267 ~C~~C~ 272 (466)
.|..|.
T Consensus 28 ~C~~C~ 33 (40)
T PF08273_consen 28 ICRQCG 33 (40)
T ss_dssp EETTTT
T ss_pred ECCCCC
Confidence 466663
No 177
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.46 E-value=50 Score=35.81 Aligned_cols=52 Identities=23% Similarity=0.500 Sum_probs=31.0
Q ss_pred eeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCce
Q 012301 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEG 289 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G 289 (466)
....|..|.- ...|+.|++.=..-+. ...-.|..|+-. ..+...|+.|.+..
T Consensus 212 ~~~~C~~Cg~--------~~~C~~C~~~l~~h~~--------~~~l~Ch~Cg~~-~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 212 KNLLCRSCGY--------ILCCPNCDVSLTYHKK--------EGKLRCHYCGYQ-EPIPKTCPQCGSED 263 (505)
T ss_pred CeeEhhhCcC--------ccCCCCCCCceEEecC--------CCeEEcCCCcCc-CCCCCCCCCCCCCe
Confidence 3457998864 3579999764222111 112578888633 23456888886653
No 178
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.34 E-value=20 Score=31.07 Aligned_cols=25 Identities=40% Similarity=1.163 Sum_probs=12.6
Q ss_pred ecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301 241 ICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (466)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 272 (466)
.|+.| |.|+..+ |++.....|..|+
T Consensus 23 rCP~C-GeGrLF~------gFLK~~p~C~aCG 47 (126)
T COG5349 23 RCPRC-GEGRLFR------GFLKVVPACEACG 47 (126)
T ss_pred CCCCC-CCchhhh------hhcccCchhhhcc
Confidence 46666 4555543 3333335565553
No 179
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=24.25 E-value=1e+02 Score=28.05 Aligned_cols=33 Identities=30% Similarity=0.617 Sum_probs=15.3
Q ss_pred eecCCCCcccEEEE--eeeCCccce-eeeeeCCCCC
Q 012301 240 RICSTCGGRGQVMR--TDQTPFGLF-SQVSVCPSCG 272 (466)
Q Consensus 240 ~~C~~C~G~G~~~~--~~~~~~G~~-~~~~~C~~C~ 272 (466)
..|+.|+..|.... ..-..|+-+ .+...|+.|+
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CG 37 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCG 37 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT-
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCC
Confidence 35777777775422 122223322 2346788885
No 180
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=24.17 E-value=1.1e+02 Score=23.00 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301 410 TVKVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 410 ~~~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
.-...||..||+.+|..+-+++....
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~g 41 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLG 41 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcC
Confidence 35678999999999999999997644
No 181
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=23.39 E-value=1.1e+02 Score=22.80 Aligned_cols=11 Identities=55% Similarity=1.105 Sum_probs=6.6
Q ss_pred eeeeccCceEE
Q 012301 281 YCRKCSGEGRI 291 (466)
Q Consensus 281 ~C~~C~G~G~v 291 (466)
.|++|+-+-.+
T Consensus 30 yCpKCK~EtlI 40 (55)
T PF14205_consen 30 YCPKCKQETLI 40 (55)
T ss_pred cCCCCCceEEE
Confidence 67777655444
No 182
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.25 E-value=79 Score=33.24 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=54.2
Q ss_pred cEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEE--EccCCCCCCCCCCCCC
Q 012301 328 DLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLV--LAKKGAPKLNKPSIRG 405 (466)
Q Consensus 328 DLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~--i~g~GmP~~~~~~~~G 405 (466)
-+|+++++.+++.|.-.+-.+++...-.+.+-=.|.-.-=++-++...|-|+..++-|.++. |-.+|||-... +..+
T Consensus 370 pkve~~ev~edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~~k~qlLvradtnlGnilLN~Ll~kgMkctr~-gknn 448 (487)
T KOG2724|consen 370 PKVETVEVQEDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDRGKFQLLVRADTNLGNILLNSLLNKGMKCTRV-GKNN 448 (487)
T ss_pred CeeEeecccCccchhccccceEEEecccccccccceeecccccccceeeeehhccchhHHHHHHhhcCCCcceec-cCCc
Confidence 35677777777777766666666666555554444322222334667788888888888864 77899997542 4567
Q ss_pred cEEEEEE
Q 012301 406 DHLFTVK 412 (466)
Q Consensus 406 DL~I~~~ 412 (466)
+|||.+-
T Consensus 449 vlIvcvp 455 (487)
T KOG2724|consen 449 VLIVCVP 455 (487)
T ss_pred eEEEEeC
Confidence 7776543
No 183
>PRK11032 hypothetical protein; Provisional
Probab=23.13 E-value=77 Score=28.97 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhCCC
Q 012301 93 EIKAAYRKLARQYHPD 108 (466)
Q Consensus 93 eIk~ayr~l~~~~HPD 108 (466)
.++++|.++.....-.
T Consensus 3 k~~~~Y~~ll~~v~~~ 18 (160)
T PRK11032 3 KVAQYYRELVASLTER 18 (160)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4677888887544333
No 184
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=22.57 E-value=38 Score=33.85 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=2.8
Q ss_pred eecccccC
Q 012301 223 ETCEVCTG 230 (466)
Q Consensus 223 ~~C~~C~G 230 (466)
..||.|.+
T Consensus 173 g~CPvCGs 180 (290)
T PF04216_consen 173 GYCPVCGS 180 (290)
T ss_dssp SS-TTT--
T ss_pred CcCCCCCC
Confidence 35666653
No 185
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=22.48 E-value=42 Score=28.30 Aligned_cols=22 Identities=27% Similarity=0.797 Sum_probs=9.8
Q ss_pred ecccccCcccccCcceeecCCC
Q 012301 224 TCEVCTGTGAKMGSKMRICSTC 245 (466)
Q Consensus 224 ~C~~C~GtG~~~~~~~~~C~~C 245 (466)
.|.-|.+.|.........|..|
T Consensus 37 aCeiC~~~GY~q~g~~lvC~~C 58 (102)
T PF10080_consen 37 ACEICGPKGYYQEGDQLVCKNC 58 (102)
T ss_pred eccccCCCceEEECCEEEEecC
Confidence 4555554444433333444444
No 186
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=21.78 E-value=1.2e+02 Score=22.76 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhhcC
Q 012301 411 VKVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 411 ~~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
-.+.||..|++.||..+.++++...
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~g 42 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELG 42 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcC
Confidence 3578999999999999999997754
No 187
>PRK05580 primosome assembly protein PriA; Validated
Probab=21.35 E-value=55 Score=36.94 Aligned_cols=51 Identities=22% Similarity=0.526 Sum_probs=30.3
Q ss_pred eeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCce
Q 012301 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEG 289 (466)
Q Consensus 222 ~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G 289 (466)
...|..|.- ...|+.|++.= +.... ...-.|..|+-. ......|+.|.+.-
T Consensus 381 ~~~C~~Cg~--------~~~C~~C~~~l-~~h~~-------~~~l~Ch~Cg~~-~~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 381 FLLCRDCGW--------VAECPHCDASL-TLHRF-------QRRLRCHHCGYQ-EPIPKACPECGSTD 431 (679)
T ss_pred ceEhhhCcC--------ccCCCCCCCce-eEECC-------CCeEECCCCcCC-CCCCCCCCCCcCCe
Confidence 567888864 35799998732 21110 112568888744 33446788886653
No 188
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=20.91 E-value=1e+02 Score=30.49 Aligned_cols=32 Identities=16% Similarity=0.356 Sum_probs=26.0
Q ss_pred EEEeeCHHhhhCC-CEEEEeccCCeE-EEEeCCC
Q 012301 350 STISISYLDAIMG-TVVKVKTVEGIS-ELQVPPG 381 (466)
Q Consensus 350 ~~~~Isl~eAl~G-~~~~i~tldG~~-~v~i~~g 381 (466)
+++.|-|+||++| +..+|++.|+.+ .|.|.+.
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd 51 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD 51 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCC
Confidence 3578999999999 578999999986 5777653
No 189
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.56 E-value=2.2e+02 Score=25.07 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=5.9
Q ss_pred eeCCCCCCcc
Q 012301 266 SVCPSCGGEG 275 (466)
Q Consensus 266 ~~C~~C~G~G 275 (466)
..||.|++..
T Consensus 108 ~~CP~Cgs~~ 117 (135)
T PRK03824 108 LKCPKCGSRD 117 (135)
T ss_pred cCCcCCCCCC
Confidence 3466666654
No 190
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=20.46 E-value=1.4e+02 Score=22.48 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhhcC
Q 012301 411 VKVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 411 ~~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
-.+.||..|++.+|.++-+++....
T Consensus 18 ~~l~f~p~lt~~eR~~vH~~a~~~g 42 (60)
T cd02640 18 RDMVFSPEFSKEERALIHQIAQKYG 42 (60)
T ss_pred ceEEcCCCCCHHHHHHHHHHHHHcC
Confidence 4688999999999999999997644
No 191
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=20.21 E-value=1.6e+02 Score=20.12 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=8.0
Q ss_pred ecCCCCcccEEEE
Q 012301 241 ICSTCGGRGQVMR 253 (466)
Q Consensus 241 ~C~~C~G~G~~~~ 253 (466)
.|+.|+....+..
T Consensus 2 ~Cp~C~~~~a~~~ 14 (40)
T smart00440 2 PCPKCGNREATFF 14 (40)
T ss_pred cCCCCCCCeEEEE
Confidence 4777766665544
No 192
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=20.15 E-value=1.5e+02 Score=20.13 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=8.0
Q ss_pred ecCCCCcccEEEEeee
Q 012301 241 ICSTCGGRGQVMRTDQ 256 (466)
Q Consensus 241 ~C~~C~G~G~~~~~~~ 256 (466)
.|+.|+....+....|
T Consensus 2 ~Cp~Cg~~~a~~~~~Q 17 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQ 17 (39)
T ss_dssp --SSS-SSEEEEEEES
T ss_pred CCcCCCCCeEEEEEee
Confidence 4777777766655443
No 193
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=20.00 E-value=1.8e+02 Score=26.25 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=30.0
Q ss_pred CCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 012301 403 IRGDHLFTVKVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 403 ~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
.+|+-++.|....|..+++.|+++++++.....
T Consensus 108 ~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~ 140 (147)
T COG5435 108 ERGDTVLIFTLTTPGEFTPSQKKAWEQVIQSFV 140 (147)
T ss_pred ccCCeEEEEEecCCCCCCHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999986544
Done!