Query 012301
Match_columns 466
No_of_seqs 385 out of 2665
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 2.2E-63 7.6E-68 500.4 22.4 285 76-433 27-316 (329)
2 1nlt_A Protein YDJ1, mitochond 100.0 7.7E-57 2.6E-61 437.0 22.8 233 192-428 8-248 (248)
3 3agx_A DNAJ homolog subfamily 100.0 1.3E-43 4.6E-48 328.4 21.9 177 195-431 2-179 (181)
4 2q2g_A HSP40 protein, heat sho 100.0 1.4E-42 4.9E-47 321.3 22.1 176 195-431 3-179 (180)
5 1c3g_A Heat shock protein 40; 100.0 2.7E-40 9.2E-45 303.3 16.5 169 196-428 1-170 (170)
6 3i38_A Putative chaperone DNAJ 99.9 9.9E-26 3.4E-30 191.3 12.6 96 336-434 2-97 (109)
7 1xao_A YDJ1, mitochondrial pro 99.9 5.7E-24 1.9E-28 183.9 11.2 94 340-434 1-99 (121)
8 1bq0_A DNAJ, HSP40; chaperone, 99.9 6E-23 2.1E-27 172.7 4.6 97 75-172 1-100 (103)
9 1hdj_A Human HSP40, HDJ-1; mol 99.8 1E-21 3.5E-26 156.3 7.0 73 75-147 1-73 (77)
10 2cug_A Mkiaa0962 protein; DNAJ 99.8 6.2E-21 2.1E-25 155.7 7.6 77 69-145 9-85 (88)
11 2ctr_A DNAJ homolog subfamily 99.8 8E-21 2.7E-25 155.1 5.8 73 76-148 6-78 (88)
12 2ctt_A DNAJ homolog subfamily 99.8 5.7E-21 2E-25 160.8 3.8 103 195-301 1-103 (104)
13 2dn9_A DNAJ homolog subfamily 99.8 2.4E-20 8.3E-25 149.0 7.1 70 76-145 6-76 (79)
14 2ctp_A DNAJ homolog subfamily 99.8 1.5E-20 5E-25 150.0 5.7 70 76-145 6-75 (78)
15 2och_A Hypothetical protein DN 99.8 2.5E-20 8.4E-25 146.8 6.2 70 73-144 4-73 (73)
16 2ej7_A HCG3 gene; HCG3 protein 99.8 3E-20 1E-24 149.6 6.3 71 76-146 8-80 (82)
17 2ctq_A DNAJ homolog subfamily 99.8 3.7E-20 1.3E-24 157.9 7.2 74 74-147 17-91 (112)
18 2dmx_A DNAJ homolog subfamily 99.8 4.6E-20 1.6E-24 151.8 6.3 73 76-148 8-82 (92)
19 2o37_A Protein SIS1; HSP40, J- 99.8 3.4E-20 1.2E-24 152.6 5.4 75 72-148 3-77 (92)
20 2lgw_A DNAJ homolog subfamily 99.8 6.5E-20 2.2E-24 152.8 5.9 71 77-147 2-74 (99)
21 2ctw_A DNAJ homolog subfamily 99.8 8E-20 2.7E-24 155.1 6.1 76 72-147 12-88 (109)
22 2yua_A Williams-beuren syndrom 99.8 2.2E-19 7.4E-24 149.8 7.5 69 74-142 14-83 (99)
23 1wjz_A 1700030A21RIK protein; 99.8 1.8E-19 6.3E-24 148.7 4.4 69 74-142 13-88 (94)
24 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 1.1E-18 3.7E-23 148.1 4.5 72 72-143 10-86 (109)
25 2ys8_A RAB-related GTP-binding 99.7 3E-18 1E-22 140.4 6.4 63 75-137 25-87 (90)
26 3apq_A DNAJ homolog subfamily 99.7 2.7E-18 9.1E-23 161.4 5.6 73 77-149 2-75 (210)
27 1faf_A Large T antigen; J doma 99.7 2.1E-17 7.3E-22 131.9 5.1 65 77-145 11-77 (79)
28 1gh6_A Large T antigen; tumor 99.7 6.1E-18 2.1E-22 144.2 1.8 65 76-143 7-73 (114)
29 2l6l_A DNAJ homolog subfamily 99.7 2.7E-17 9.2E-22 148.2 6.0 69 75-143 8-83 (155)
30 2pf4_E Small T antigen; PP2A, 99.7 1.4E-17 4.9E-22 151.5 1.5 65 76-143 10-76 (174)
31 1iur_A KIAA0730 protein; DNAJ 99.6 6.9E-17 2.4E-21 131.4 3.4 62 76-137 15-78 (88)
32 1n4c_A Auxilin; four helix bun 99.6 2.1E-16 7.2E-21 144.7 5.2 63 76-138 116-182 (182)
33 3hho_A CO-chaperone protein HS 99.6 3.7E-16 1.3E-20 143.2 5.5 67 76-142 3-77 (174)
34 3apo_A DNAJ homolog subfamily 99.6 1E-16 3.5E-21 178.5 1.1 78 72-149 16-94 (780)
35 2qwo_B Putative tyrosine-prote 99.6 4.9E-16 1.7E-20 126.9 3.8 58 74-131 30-91 (92)
36 1fpo_A HSC20, chaperone protei 99.6 9.7E-16 3.3E-20 140.0 4.7 65 78-142 2-74 (171)
37 3ag7_A Putative uncharacterize 99.6 4.8E-16 1.6E-20 130.8 2.1 61 72-133 36-104 (106)
38 3bvo_A CO-chaperone protein HS 99.6 1.4E-15 4.9E-20 142.9 5.5 65 76-140 42-114 (207)
39 2guz_A Mitochondrial import in 99.6 1.5E-15 5.2E-20 118.6 4.5 57 77-136 14-71 (71)
40 3uo3_A J-type CO-chaperone JAC 99.5 3E-15 1E-19 137.8 3.6 65 76-142 10-81 (181)
41 1nlt_A Protein YDJ1, mitochond 99.5 1.9E-14 6.6E-19 139.1 6.9 118 222-349 54-247 (248)
42 1exk_A DNAJ protein; extended 99.4 9.8E-14 3.4E-18 110.5 6.2 78 212-293 1-78 (79)
43 3i38_A Putative chaperone DNAJ 99.1 3.1E-11 1.1E-15 102.0 4.0 83 193-350 9-91 (109)
44 1xao_A YDJ1, mitochondrial pro 99.0 1.6E-10 5.3E-15 99.5 5.3 85 193-349 4-92 (121)
45 2y4t_A DNAJ homolog subfamily 98.8 1.5E-09 5.2E-14 110.2 5.2 64 77-140 382-449 (450)
46 2q2g_A HSP40 protein, heat sho 98.8 4.5E-09 1.5E-13 96.6 5.5 84 193-348 90-174 (180)
47 3agx_A DNAJ homolog subfamily 98.8 4.8E-09 1.7E-13 96.4 5.4 84 193-348 90-174 (181)
48 1c3g_A Heat shock protein 40; 98.7 5E-09 1.7E-13 95.4 3.7 84 193-348 84-168 (170)
49 2guz_B Mitochondrial import in 98.7 1.1E-08 3.7E-13 77.9 4.6 52 78-132 5-59 (65)
50 3lz8_A Putative chaperone DNAJ 98.4 2.7E-07 9.2E-12 92.4 7.8 76 343-419 138-227 (329)
51 2ctt_A DNAJ homolog subfamily 97.8 9.5E-06 3.3E-10 67.5 2.9 52 221-284 44-100 (104)
52 1exk_A DNAJ protein; extended 97.7 8.3E-06 2.8E-10 64.2 1.9 47 221-279 27-78 (79)
53 3pmq_A Decaheme cytochrome C M 97.5 2.7E-06 9.1E-11 92.0 -5.3 78 199-276 168-257 (669)
54 2bx9_A Anti-trap, AT, tryptoph 97.2 5.6E-05 1.9E-09 54.8 -0.2 31 222-255 9-39 (53)
55 3lcz_A YCZA, inhibitor of trap 97.1 0.00016 5.3E-09 52.5 1.5 27 266-292 10-36 (53)
56 3lcz_A YCZA, inhibitor of trap 97.0 0.00029 9.8E-09 51.1 2.3 28 240-279 10-37 (53)
57 2bx9_A Anti-trap, AT, tryptoph 96.7 0.00063 2.2E-08 49.3 2.3 29 239-279 9-37 (53)
58 2pzi_A Probable serine/threoni 88.6 0.2 7E-06 54.2 3.1 50 72-128 624-675 (681)
59 1ltl_A DNA replication initiat 49.3 17 0.00058 34.7 4.8 83 240-336 135-224 (279)
60 2qkd_A Zinc finger protein ZPR 40.8 89 0.0031 31.5 8.7 26 363-392 295-320 (404)
61 1ltl_A DNA replication initiat 35.2 52 0.0018 31.2 5.8 62 265-332 134-203 (279)
62 2vl6_A SSO MCM N-TER, minichro 32.8 2E+02 0.0068 26.8 9.5 85 239-335 141-236 (268)
63 1msz_A DNA-binding protein smu 28.0 36 0.0012 26.7 2.7 24 412-435 35-58 (86)
64 1uzc_A Hypothetical protein FL 25.8 63 0.0022 24.2 3.6 53 88-142 11-66 (71)
65 3nyb_B Protein AIR2; polya RNA 25.7 29 0.001 26.9 1.8 54 221-278 4-59 (83)
66 2cqn_A Formin-binding protein 25.2 54 0.0019 24.9 3.2 53 90-143 7-63 (77)
67 1wgf_A Upstream binding factor 24.9 1.7E+02 0.0058 22.3 6.2 42 95-140 32-73 (90)
68 2qkd_A Zinc finger protein ZPR 21.5 71 0.0024 32.2 4.1 77 239-315 12-112 (404)
69 2b7e_A PRE-mRNA processing pro 20.2 86 0.0029 22.7 3.2 49 92-142 3-56 (59)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=2.2e-63 Score=500.40 Aligned_cols=285 Identities=33% Similarity=0.564 Sum_probs=160.0
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCC--
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG-- 153 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~-- 153 (466)
..|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||+|+......+.+..
T Consensus 27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~~ 106 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQ 106 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccccc
Confidence 479999999999999999999999999999999998888899999999999999999999999998543211111100
Q ss_pred --CCCCC-CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeeeEeeeccccccceeeeEeeeeeeecccccC
Q 012301 154 --SSAYT-TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (466)
Q Consensus 154 --~~~~~-~~~~d~f~~fFg~~~gg~~~~~~~~f~~~~~~~~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~G 230 (466)
.++|. .++.|+|+.|||++ +. +. .+....++.|+.++|.|+|+|+|+|+++++.+.+.+.| |
T Consensus 107 ~~~~~f~~~~f~diF~~~Fg~~--g~--------~~-~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----g 171 (329)
T 3lz8_A 107 THEQSYSQQDFDDIFSSMFGQQ--AH--------QR-RRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----V 171 (329)
T ss_dssp -----------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC----S
T ss_pred cccCCcCCCchhhhhHhhhcCc--CC--------CC-CCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec----C
Confidence 11121 23446777777531 10 00 01124578999999999999999999999998875522 1
Q ss_pred cccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcE
Q 012301 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (466)
Q Consensus 231 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~ 310 (466)
.|.+. +...++++|+||+|+++|++
T Consensus 172 -----------------~G~v~--------------------------------------~~~~~~l~V~IP~Gv~~G~~ 196 (329)
T 3lz8_A 172 -----------------FGMIE--------------------------------------SETPKTLNVKIPAGVVDGQR 196 (329)
T ss_dssp -----------------CC-CC--------------------------------------EEEEEEEEEEECTTCCTTCE
T ss_pred -----------------CeEEE--------------------------------------EecceEEEEeCCCCCCCCCE
Confidence 12111 12246899999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEE
Q 012301 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL 390 (466)
Q Consensus 311 i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i 390 (466)
|+|+|+|++++.++.+|||||+|+|++|+.|+|+|+||+++++|+|+|||+|++++|+||||+++|+||++++||++++|
T Consensus 197 Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~rl 276 (329)
T 3lz8_A 197 IRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRI 276 (329)
T ss_dssp EEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEE
T ss_pred EEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEEEE
Confidence 99999999987788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 012301 391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (466)
Q Consensus 391 ~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~~~ 433 (466)
+|+|||.. +.+|||||+|+|+||++|+++|+++|++|+++
T Consensus 277 ~G~GmP~~---~~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~~ 316 (329)
T 3lz8_A 277 KGKGLVSK---THTGDLFAVIKIVMPTKPDEKARELWQQLAAA 316 (329)
T ss_dssp TTCSCBCS---SCBCCEEEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred cCCCCCCC---CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999975 36999999999999999999999999999983
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=7.7e-57 Score=437.02 Aligned_cols=233 Identities=27% Similarity=0.509 Sum_probs=208.5
Q ss_pred cccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCcccee-eeeeCCC
Q 012301 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFS-QVSVCPS 270 (466)
Q Consensus 192 ~~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~ 270 (466)
+.++.|++++|.|+|+|+|+|+++++.+.+.+.|+.|+|+|...+. ..+|+.|+|+|+++..+++++ +++ ...+|+.
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~ 85 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV 85 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence 3578999999999999999999999999999999999999999887 499999999999988777777 554 4589999
Q ss_pred CCCccEEE--eeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 012301 271 CGGEGEVI--SEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (466)
Q Consensus 271 C~G~G~~~--~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL 348 (466)
|+|.|+++ ++.|..|+|.|.+.+.++++|+||+|+.+|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||
T Consensus 86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~-~g~~GDl~v~i~v~~h~~F~R~G~DL 164 (248)
T 1nlt_A 86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDL 164 (248)
T ss_dssp CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCC-CCCcceEEEEEEEecCccceeeCCEE
Confidence 99999999 8999999999999999999999999999999999999999975 56899999999999999999999999
Q ss_pred EEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCC--CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCC--CCHHH
Q 012301 349 FSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNR--ISAKE 423 (466)
Q Consensus 349 ~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g--~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~--ls~~~ 423 (466)
|++++|+|+|||+|++++|+||||+ ++|+||++ ++||++++|+|+|||..+++ .+|||||+|+|+||++ ||++|
T Consensus 165 ~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q 243 (248)
T 1nlt_A 165 VYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEEN 243 (248)
T ss_dssp EEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC--------
T ss_pred EEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHH
Confidence 9999999999999999999999996 78999998 99999999999999987665 6899999999999999 99999
Q ss_pred HHHHH
Q 012301 424 RELLE 428 (466)
Q Consensus 424 ~~ll~ 428 (466)
+++|+
T Consensus 244 ~~~l~ 248 (248)
T 1nlt_A 244 LKKLE 248 (248)
T ss_dssp -----
T ss_pred HHhhC
Confidence 99885
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=1.3e-43 Score=328.36 Aligned_cols=177 Identities=25% Similarity=0.369 Sum_probs=156.8
Q ss_pred CCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCc
Q 012301 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (466)
Q Consensus 195 g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~ 274 (466)
+.|++++|.|||+|+|+|+++++.+.+ .|..|
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~-------------------~c~~c----------------------------- 33 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH-------------------KRLNP----------------------------- 33 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE-------------------EEECT-----------------------------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec-------------------ccCCC-----------------------------
Confidence 368999999999999999999987643 12223
Q ss_pred cEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEee
Q 012301 275 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI 354 (466)
Q Consensus 275 G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~I 354 (466)
+|.|.+.+.++++|+||+|+.+|++|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+||++++.|
T Consensus 34 -----------~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I 101 (181)
T 3agx_A 34 -----------DGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARI 101 (181)
T ss_dssp -----------TSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred -----------CCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEc
Confidence 333344557899999999999999999999999987 67899999999999999999999999999999
Q ss_pred CHHhhhCCCEEEEeccCCe-EEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Q 012301 355 SYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 431 (466)
Q Consensus 355 sl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~ 431 (466)
+|+||++|++++|+||||+ ++|++|+++++|++++|+|+|||..++++.+|||||+|+|.||++||++|+++|++++
T Consensus 102 sl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~~ 179 (181)
T 3agx_A 102 SLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179 (181)
T ss_dssp EHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHHS
T ss_pred CHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence 9999999999999999995 7899999999999999999999987766678999999999999999999999999997
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.4e-42 Score=321.27 Aligned_cols=176 Identities=21% Similarity=0.422 Sum_probs=162.5
Q ss_pred CCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCc
Q 012301 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (466)
Q Consensus 195 g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~ 274 (466)
+.|++++|.|||+|+|+|+++++.+.+.+.|..
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------- 35 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------- 35 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT-----------------------------------------------
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC-----------------------------------------------
Confidence 679999999999999999999999998887741
Q ss_pred cEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEee
Q 012301 275 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI 354 (466)
Q Consensus 275 G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~I 354 (466)
|.+.+.++++|+||+|+++|++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus 36 --------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I 101 (180)
T 2q2g_A 36 --------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTI 101 (180)
T ss_dssp --------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred --------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEc
Confidence 223446889999999999999999999999965688999999999999999999999999999999
Q ss_pred CHHhhhCCCEEEEeccCCe-EEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Q 012301 355 SYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 431 (466)
Q Consensus 355 sl~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~~l~ 431 (466)
+|+||++|++++|+||||+ ++|++|++++||++++|+|+|||..++++.+|||||+|+|.||++||++|+++|++++
T Consensus 102 sl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~~~ 179 (180)
T 2q2g_A 102 PLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179 (180)
T ss_dssp EHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHHHHC
T ss_pred CHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence 9999999999999999996 7899999999999999999999987766679999999999999999999999999986
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=2.7e-40 Score=303.29 Aligned_cols=169 Identities=22% Similarity=0.449 Sum_probs=153.9
Q ss_pred CceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCcc
Q 012301 196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 275 (466)
Q Consensus 196 ~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G 275 (466)
+|++++|.|||+|+|+|+++++.+.+.. + .|
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~-------------------~G-------------------------- 31 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P-------------------HG-------------------------- 31 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-------------------TT--------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-------------------CC--------------------------
Confidence 3789999999999999999999987641 0 01
Q ss_pred EEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEEeeC
Q 012301 276 EVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISIS 355 (466)
Q Consensus 276 ~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~~~~Is 355 (466)
.+ +.++++|+||+|+.+|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||+++++|+
T Consensus 32 --------------~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is 96 (170)
T 1c3g_A 32 --------------AS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS 96 (170)
T ss_dssp --------------EE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCB
T ss_pred --------------cE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcC
Confidence 12 357899999999999999999999997777889999999999999999999999999999999
Q ss_pred HHhhhCCCEEEEeccCCe-EEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHH
Q 012301 356 YLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLE 428 (466)
Q Consensus 356 l~eAl~G~~~~i~tldG~-~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P~~ls~~~~~ll~ 428 (466)
|+||++|++++|+||||+ ++|++|+++++|++++|+|+|||..++++.+|||||+|+|.||++||++|+++|+
T Consensus 97 l~eAllG~~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 170 (170)
T 1c3g_A 97 FKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 170 (170)
T ss_dssp HHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred HHHHhCCCeEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence 999999999999999996 7899999999999999999999987766678999999999999999999999874
No 6
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.93 E-value=9.9e-26 Score=191.29 Aligned_cols=96 Identities=29% Similarity=0.445 Sum_probs=90.5
Q ss_pred EeccccccCCcceEEEEeeCHHhhhCCCEEEEeccCCeEEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEEEEEEEEC
Q 012301 336 EEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTI 415 (466)
Q Consensus 336 ~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~ 415 (466)
++|+.|+|+|+||+++++|+|.||++|++++|+|+||.++|+||+++++|++++|+|+|||. . +.+|||||+|+|.|
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~-~--~~~GDL~v~~~V~~ 78 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVS-K--THTGDLFAVIKIVM 78 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBC-S--SCBCCEEEEEEECC
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCC-C--CCCcCEEEEEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999998 3 26999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc
Q 012301 416 PNRISAKERELLEELASLR 434 (466)
Q Consensus 416 P~~ls~~~~~ll~~l~~~~ 434 (466)
|++|+++|+++|++++++.
T Consensus 79 P~~Ls~~q~~~l~~l~~~~ 97 (109)
T 3i38_A 79 PTKPDEKARELWQQLAAAE 97 (109)
T ss_dssp CSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999874
No 7
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.7e-24 Score=183.93 Aligned_cols=94 Identities=29% Similarity=0.420 Sum_probs=84.4
Q ss_pred ccccCCcceEEEEeeCHHhhhCCCEEEEeccCCe-EEEEeCCC--CccCcEEEEccCCCCCCCCCCCCCcEEEEEEEECC
Q 012301 340 GIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416 (466)
Q Consensus 340 ~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~i~~g--~~~g~~~~i~g~GmP~~~~~~~~GDL~I~~~V~~P 416 (466)
.|+|+|+||++++.|+|.||++|++++|+|+||+ +.|+||+| +++|++++|+|+|||..+++ .+|||||+|+|.||
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P 79 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP 79 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence 4899999999999999999999999999999997 78999999 99999999999999987665 68999999999999
Q ss_pred CC--CCHHHHHHHHHHHhhc
Q 012301 417 NR--ISAKERELLEELASLR 434 (466)
Q Consensus 417 ~~--ls~~~~~ll~~l~~~~ 434 (466)
++ |+++|+++|++++...
T Consensus 80 ~~~~ls~~q~~~l~~l~~~~ 99 (121)
T 1xao_A 80 ENHFTSEENLKKLEEILPPR 99 (121)
T ss_dssp CTTCSCHHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHHHHHHHcccc
Confidence 99 9999999999999644
No 8
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.86 E-value=6e-23 Score=172.66 Aligned_cols=97 Identities=48% Similarity=0.796 Sum_probs=69.9
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcccccCCC
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG 153 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~ 153 (466)
|..|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||++|++++..+..++
T Consensus 1 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~ 80 (103)
T 1bq0_A 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGG 80 (103)
T ss_dssp CCCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC---
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCC
Confidence 35789999999999999999999999999999999974 67889999999999999999999999999998877532111
Q ss_pred CCCCC--CCCcCccccccCCC
Q 012301 154 SSAYT--TNPFDLFETFFGPS 172 (466)
Q Consensus 154 ~~~~~--~~~~d~f~~fFg~~ 172 (466)
+++. .++.++|++||+..
T Consensus 81 -~~~~~~~~~~~~f~~~f~~~ 100 (103)
T 1bq0_A 81 -GGFGGGADFSDIFGDVFGDI 100 (103)
T ss_dssp ---------------------
T ss_pred -CCCCCCCCHHHHHHHHHHhh
Confidence 1111 13446677777643
No 9
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.85 E-value=1e-21 Score=156.33 Aligned_cols=73 Identities=62% Similarity=1.042 Sum_probs=69.2
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 147 (466)
|..|||+||||+++|+.+|||+|||+|++++|||+++.+.+.+.|++|++||++|+||.+|+.||++|.+++.
T Consensus 1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 4579999999999999999999999999999999998888999999999999999999999999999988765
No 10
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=6.2e-21 Score=155.72 Aligned_cols=77 Identities=49% Similarity=0.827 Sum_probs=70.4
Q ss_pred cccccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccC
Q 012301 69 GRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG 145 (466)
Q Consensus 69 ~~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 145 (466)
.+.......|||+||||+++|+.+|||+|||+|+++||||+++.+.+.++|++|++||++|+||.+|+.||++|+..
T Consensus 9 ~~~~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 9 LQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp CCCCCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred hhhhccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 33355567899999999999999999999999999999999988889999999999999999999999999998653
No 11
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8e-21 Score=155.09 Aligned_cols=73 Identities=56% Similarity=0.914 Sum_probs=68.6
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCccc
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~ 148 (466)
..|||+||||+++|+.+|||+|||+|+++||||+++.+.+.++|++|++||++|+||.+|+.||.+|.+++..
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 78 (88)
T 2ctr_A 6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS 78 (88)
T ss_dssp CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence 4689999999999999999999999999999999988788999999999999999999999999999877653
No 12
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=5.7e-21 Score=160.83 Aligned_cols=103 Identities=34% Similarity=0.697 Sum_probs=93.6
Q ss_pred CCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCc
Q 012301 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (466)
Q Consensus 195 g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~ 274 (466)
|.|+.++|.|+|+|+|+|.+++|.+.+.+.|+.|+|+|...+....+|+.|+|+|++...+ |+|++..+|+.|+|.
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~ 76 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGR 76 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCc
Confidence 3578899999999999999999999999999999999999888889999999999886643 667777899999999
Q ss_pred cEEEeeeeeeccCceEEEeeeEEEEEc
Q 012301 275 GEVISEYCRKCSGEGRIRLKKNIKVKV 301 (466)
Q Consensus 275 G~~~~~~C~~C~G~G~v~~~~~l~V~I 301 (466)
|++++++|..|+|.|.+.+.++|+|+|
T Consensus 77 G~~i~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 77 GSIIISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred ceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence 999999999999999999888887764
No 13
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=149.03 Aligned_cols=70 Identities=61% Similarity=1.032 Sum_probs=65.5
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccC
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG 145 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 145 (466)
..|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||++|..+
T Consensus 6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 5689999999999999999999999999999999874 678899999999999999999999999998654
No 14
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-20 Score=149.98 Aligned_cols=70 Identities=56% Similarity=0.962 Sum_probs=66.5
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccC
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG 145 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 145 (466)
..|||+||||+++|+.+|||+|||+|+++||||++..+++.+.|++|++||++|+||.+|+.||++|.++
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 4689999999999999999999999999999999988888999999999999999999999999998764
No 15
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.80 E-value=2.5e-20 Score=146.77 Aligned_cols=70 Identities=54% Similarity=0.874 Sum_probs=62.3
Q ss_pred cccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhccccccccc
Q 012301 73 VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA 144 (466)
Q Consensus 73 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 144 (466)
|....|||+||||+++|+.++||+|||+|+++||||+++. +.+.|++|++||++|+||.+|+.||++|++
T Consensus 4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 4556799999999999999999999999999999999853 468999999999999999999999999863
No 16
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3e-20 Score=149.58 Aligned_cols=71 Identities=54% Similarity=0.870 Sum_probs=65.5
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhhhhcccccccccCc
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV 146 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 146 (466)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .+.+.|++|++||++|+||.+|+.||++|..++
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 46899999999999999999999999999999998753 577899999999999999999999999997654
No 17
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-20 Score=157.93 Aligned_cols=74 Identities=31% Similarity=0.562 Sum_probs=68.5
Q ss_pred ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (466)
Q Consensus 74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 147 (466)
....|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|.+++.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 44689999999999999999999999999999999997 577899999999999999999999999999977653
No 18
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-20 Score=151.77 Aligned_cols=73 Identities=52% Similarity=0.797 Sum_probs=67.0
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhhhhcccccccccCccc
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~ 148 (466)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .+.++|++|++||++|+||.+|+.||++|.+++..
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 45899999999999999999999999999999998753 57889999999999999999999999999877654
No 19
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.4e-20 Score=152.59 Aligned_cols=75 Identities=49% Similarity=0.798 Sum_probs=67.7
Q ss_pred ccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccCccc
Q 012301 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (466)
Q Consensus 72 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~ 148 (466)
.+.+..|||+||||+++|+.+|||+|||+|+++||||+++ ...++|++|++||++|+||.+|+.||++|.+++..
T Consensus 3 ~m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 77 (92)
T 2o37_A 3 AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPT--GDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS 77 (92)
T ss_dssp -CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTT--CCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred ccccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence 3456789999999999999999999999999999999985 34679999999999999999999999999887654
No 20
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-20 Score=152.85 Aligned_cols=71 Identities=54% Similarity=0.899 Sum_probs=64.1
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 147 (466)
.|||+||||+++|+.+|||+|||+|+++||||+++.. .+.+.|++|++||++|+||.+|+.||.+|.+++.
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~ 74 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT 74 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 5899999999999999999999999999999998753 4788999999999999999999999999987765
No 21
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=8e-20 Score=155.07 Aligned_cols=76 Identities=45% Similarity=0.801 Sum_probs=69.4
Q ss_pred ccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhhhhcccccccccCcc
Q 012301 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (466)
Q Consensus 72 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 147 (466)
......|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||++|..++.
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 44556899999999999999999999999999999999974 67889999999999999999999999999987654
No 22
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=149.81 Aligned_cols=69 Identities=41% Similarity=0.583 Sum_probs=63.7
Q ss_pred ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhccccccc
Q 012301 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (466)
Q Consensus 74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 142 (466)
....|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||+..
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 34579999999999999999999999999999999996 4678899999999999999999999999853
No 23
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.76 E-value=1.8e-19 Score=148.71 Aligned_cols=69 Identities=32% Similarity=0.570 Sum_probs=63.4
Q ss_pred ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHHHHHhchhhhhccccccc
Q 012301 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-------PGATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (466)
Q Consensus 74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 142 (466)
....|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||.+.
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 346799999999999999999999999999999999863 457789999999999999999999999975
No 24
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.73 E-value=1.1e-18 Score=148.09 Aligned_cols=72 Identities=38% Similarity=0.631 Sum_probs=66.0
Q ss_pred ccccCcccchhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHHHHHhchhhhhcccccccc
Q 012301 72 VVCASGDYYATLGVPKSA-SGKEIKAAYRKLARQYHPDVNKE----PGATEKFKEISAAYEVLSDDKKRAMYDQYGE 143 (466)
Q Consensus 72 ~~~~~~~~Y~vLgv~~~a-s~~eIk~ayr~l~~~~HPD~~~~----~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 143 (466)
......|||+||||+++| +.+|||+|||+|+++||||+++. +.+.+.|++|++||++|+||.+|+.||+++.
T Consensus 10 ~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp STTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 445578999999999999 99999999999999999999875 5678999999999999999999999999874
No 25
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3e-18 Score=140.35 Aligned_cols=63 Identities=38% Similarity=0.524 Sum_probs=60.0
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcc
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~ 137 (466)
...|||+||||+++|+.+|||+|||+|+++||||+++.+++.++|++|++||++|+|+.+|+.
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 468999999999999999999999999999999999888899999999999999999999874
No 26
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.72 E-value=2.7e-18 Score=161.43 Aligned_cols=73 Identities=47% Similarity=0.835 Sum_probs=68.1
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhcccccccccCcccc
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST 149 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~ 149 (466)
.|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|.+++...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~ 75 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 75 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc
Confidence 58999999999999999999999999999999996 56789999999999999999999999999998877643
No 27
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.68 E-value=2.1e-17 Score=131.90 Aligned_cols=65 Identities=15% Similarity=0.305 Sum_probs=58.8
Q ss_pred cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccccC
Q 012301 77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG 145 (466)
Q Consensus 77 ~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 145 (466)
.++|+||||+++ ++.+|||+|||+|+++||||++. +.++|++|++||++|+|+.+|.. |.||..+
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~---~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~ 77 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVYNLR-MNLGGTG 77 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC---CHHHHHHHHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---CHHHHHHHHHHHHHHhhHHHHHH-HhcCCcc
Confidence 579999999999 99999999999999999999974 46899999999999999999987 5577654
No 28
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.68 E-value=6.1e-18 Score=144.22 Aligned_cols=65 Identities=31% Similarity=0.510 Sum_probs=60.5
Q ss_pred CcccchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccc
Q 012301 76 SGDYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGE 143 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 143 (466)
..+||+||||+++|+. ++||+|||+|++++|||+++. .++|++|++||+||+||.+|+.||.+|.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 4589999999999999 999999999999999999864 5789999999999999999999999874
No 29
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-17 Score=148.18 Aligned_cols=69 Identities=32% Similarity=0.549 Sum_probs=62.7
Q ss_pred cCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHHHHhchhhhhcccccccc
Q 012301 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-------ATEKFKEISAAYEVLSDDKKRAMYDQYGE 143 (466)
Q Consensus 75 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~-------~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 143 (466)
...|||+||||+++|+.++||+|||+|++++|||+++... +.+.|++|++||++|+||.+|+.||..+.
T Consensus 8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3569999999999999999999999999999999987542 56899999999999999999999998663
No 30
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.65 E-value=1.4e-17 Score=151.50 Aligned_cols=65 Identities=29% Similarity=0.453 Sum_probs=58.0
Q ss_pred CcccchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhcccccccc
Q 012301 76 SGDYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGE 143 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 143 (466)
..|||+||||+++|+ .+|||+|||++|+++|||++++ .++|++|++||++|+||.+|+.||+||.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 468999999999998 6999999999999999999864 4789999999999999999999999995
No 31
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.63 E-value=6.9e-17 Score=131.41 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=56.5
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhhhhcc
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAM 137 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~ 137 (466)
..++|+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+|...|..
T Consensus 15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4689999999999999999999999999999999975 3478999999999999999888744
No 32
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.62 E-value=2.1e-16 Score=144.66 Aligned_cols=63 Identities=21% Similarity=0.412 Sum_probs=58.7
Q ss_pred CcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHHHhchhhhhccc
Q 012301 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMY 138 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d~~~R~~y 138 (466)
..|||+||||+++|+.+|||+|||+|+++||||+++... +.++|++|++||++|+|+.+|+.|
T Consensus 116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 369999999999999999999999999999999987543 788999999999999999999987
No 33
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.60 E-value=3.7e-16 Score=143.20 Aligned_cols=67 Identities=27% Similarity=0.496 Sum_probs=60.4
Q ss_pred CcccchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhhhhccccccc
Q 012301 76 SGDYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (466)
Q Consensus 76 ~~~~Y~vLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 142 (466)
..|||+||||+++++ .++||+|||+|+++||||+++... +.+.|..|++||++|+||.+|+.||...
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 77 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHc
Confidence 468999999999998 999999999999999999987543 5689999999999999999999999743
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.60 E-value=1e-16 Score=178.53 Aligned_cols=78 Identities=44% Similarity=0.749 Sum_probs=40.9
Q ss_pred ccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhhhhcccccccccCcccc
Q 012301 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST 149 (466)
Q Consensus 72 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~ 149 (466)
......|||+||||+++||.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|++++...
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 4556789999999999999999999999999999999985 46788999999999999999999999999999887654
No 35
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.58 E-value=4.9e-16 Score=126.92 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=51.8
Q ss_pred ccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhch
Q 012301 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSD 131 (466)
Q Consensus 74 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d 131 (466)
+...++|++|||++.||.+|||+|||++|++||||+++.. .+.++|++|++||+||.+
T Consensus 30 ~~~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 30 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 3336899999999999999999999999999999998753 278899999999999976
No 36
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.57 E-value=9.7e-16 Score=140.00 Aligned_cols=65 Identities=28% Similarity=0.455 Sum_probs=59.6
Q ss_pred ccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhhhhccccccc
Q 012301 78 DYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (466)
Q Consensus 78 ~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 142 (466)
|||+||||++++ +.++||+|||+|+++||||+++... +.++|..|++||++|+||.+|+.||...
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 799999999999 9999999999999999999987532 4578999999999999999999999864
No 37
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.56 E-value=4.8e-16 Score=130.82 Aligned_cols=61 Identities=13% Similarity=0.262 Sum_probs=53.5
Q ss_pred ccccCcccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------chHHHHHHHHHHHHHhchhh
Q 012301 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--------GATEKFKEISAAYEVLSDDK 133 (466)
Q Consensus 72 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--------~~~~~f~~i~~Ay~vL~d~~ 133 (466)
+.+...|||+|||++. ||.+|||+|||+++++||||+++.+ .++++|++|++||++|+|+.
T Consensus 36 ~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 36 ILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 4455689999999996 9999999999999999999998632 25789999999999999975
No 38
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=142.88 Aligned_cols=65 Identities=22% Similarity=0.425 Sum_probs=58.6
Q ss_pred CcccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhhhhccccc
Q 012301 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (466)
Q Consensus 76 ~~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~R~~yd~ 140 (466)
..|||+||||+++ ++.++||+|||+|+++||||+++... +.++|++|++||++|+||.+|+.||.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4689999999986 79999999999999999999987432 45789999999999999999999996
No 39
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.5e-15 Score=118.62 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=52.0
Q ss_pred cccchhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhc
Q 012301 77 GDYYATLGVPK-SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA 136 (466)
Q Consensus 77 ~~~Y~vLgv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 136 (466)
.++|+||||++ +|+.+|||+|||+|+++||||++ ++.+.|++|++||++|+|+..|+
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~---g~~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT---CCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHhhhhhcC
Confidence 58999999999 79999999999999999999996 45679999999999999987663
No 40
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.52 E-value=3e-15 Score=137.81 Aligned_cols=65 Identities=25% Similarity=0.496 Sum_probs=59.0
Q ss_pred Ccccchhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhccccccc
Q 012301 76 SGDYYATL------GVPK-SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (466)
Q Consensus 76 ~~~~Y~vL------gv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 142 (466)
..|||+|| |+++ +|+.++||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||...
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 46899999 4665 9999999999999999999999865 7788999999999999999999999843
No 41
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.49 E-value=1.9e-14 Score=139.11 Aligned_cols=118 Identities=22% Similarity=0.484 Sum_probs=83.3
Q ss_pred eeecccccCcccccC---------cceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeec-------
Q 012301 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (466)
Q Consensus 222 ~~~C~~C~GtG~~~~---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C------- 285 (466)
...|+.|+|+|.... ....+|+.|+|+|+++... .+|+.|+|.|.+.+.+-.++
T Consensus 54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 123 (248)
T 1nlt_A 54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPK----------DRCKSCNGKKVENERKILEVHVEPGMK 123 (248)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTT----------SBCSSSTTSCEEEEEEEEEEEECTTCC
T ss_pred CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccC----------CCCcccCCCceEeeeEEEEEEECCCcc
Confidence 378999999997532 2357899999999876311 78999999998765433332
Q ss_pred -------cCceE---------E---------------------------------------E-eeeEEEEEcCCC--CcC
Q 012301 286 -------SGEGR---------I---------------------------------------R-LKKNIKVKVPPG--VST 307 (466)
Q Consensus 286 -------~G~G~---------v---------------------------------------~-~~~~l~V~Ip~G--~~~ 307 (466)
.|+|. + + +.+.++|+||+| +++
T Consensus 124 ~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~ 203 (248)
T 1nlt_A 124 DGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAP 203 (248)
T ss_dssp TTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCST
T ss_pred CCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCC
Confidence 44432 1 2 234699999999 999
Q ss_pred CcEEEEccCCCCCCCCCCCccEEEEEEEEeccc--cccCCcceE
Q 012301 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDLF 349 (466)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~--f~R~g~dL~ 349 (466)
|++++|+|+|++...+...|||||+|+|..|.. ++.+..+|+
T Consensus 204 g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~l 247 (248)
T 1nlt_A 204 GMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKKL 247 (248)
T ss_dssp TCEEEETTCSCBCSSSCSBCCEEEEEEEECCC------------
T ss_pred CeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHhh
Confidence 999999999999754446799999999999987 777766654
No 42
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.44 E-value=9.8e-14 Score=110.47 Aligned_cols=78 Identities=44% Similarity=0.981 Sum_probs=68.6
Q ss_pred ceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeeeccCceEE
Q 012301 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (466)
Q Consensus 212 G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v 291 (466)
|.+++|.+.+.+.|+.|+|+|........+|+.|+|+|+++..+ |+|+...+|+.|+|.|.++++.|..|+|.|.+
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~ 76 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV 76 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence 56678889999999999999988777778999999999987643 77777789999999999999999999999987
Q ss_pred Ee
Q 012301 292 RL 293 (466)
Q Consensus 292 ~~ 293 (466)
.+
T Consensus 77 ~~ 78 (79)
T 1exk_A 77 ER 78 (79)
T ss_dssp EC
T ss_pred ee
Confidence 53
No 43
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.11 E-value=3.1e-11 Score=101.98 Aligned_cols=83 Identities=25% Similarity=0.412 Sum_probs=69.1
Q ss_pred ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (466)
Q Consensus 193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 272 (466)
+.|.|+.+++.|+|.||+.|++++|..-
T Consensus 9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl---------------------------------------------------- 36 (109)
T 3i38_A 9 IVGHNLEIVLPLAPWEAALGAKVTVPTL---------------------------------------------------- 36 (109)
T ss_dssp EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred EECCEEEEEEEcCHHHHhCCCEEEEEcC----------------------------------------------------
Confidence 4688999999999999999998776521
Q ss_pred CccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 012301 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (466)
Q Consensus 273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~f~R~g~dL~~ 350 (466)
++.++|+||+|+++|++++|+|+|++. .+ .+|||||+|+|..|..++.+..+++.
T Consensus 37 ---------------------dG~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~~q~~~l~ 91 (109)
T 3i38_A 37 ---------------------KESILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDEKARELWQ 91 (109)
T ss_dssp ---------------------SSCEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCHHHHHHHH
T ss_pred ---------------------CCCEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCHHHHHHHH
Confidence 123689999999999999999999997 34 78999999999999988776655543
No 44
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.04 E-value=1.6e-10 Score=99.50 Aligned_cols=85 Identities=22% Similarity=0.388 Sum_probs=66.4
Q ss_pred ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (466)
Q Consensus 193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 272 (466)
++|.|+.+++.|+|.||+.|++++|..-
T Consensus 4 R~G~DL~~~~~Isl~eAllG~~i~v~tl---------------------------------------------------- 31 (121)
T 1xao_A 4 RDGDDLVYEAEIDLLTAIAGGEFALEHV---------------------------------------------------- 31 (121)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred EECCeEEEEEEcCHHHHhCCCEEEEecC----------------------------------------------------
Confidence 4688999999999999999998776411
Q ss_pred CccEEEeeeeeeccCceEEEeeeEEEEEcCCC--CcCCcEEEEccCCCCCCCCCCCccEEEEEEEEeccc--cccCCcce
Q 012301 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDL 348 (466)
Q Consensus 273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~g~~~GDLiV~v~v~~~~~--f~R~g~dL 348 (466)
+.+.+.|+||+| +++|++++|+|+|++...+..+|||||+|+|..|.. ++.++.++
T Consensus 32 --------------------dG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~ 91 (121)
T 1xao_A 32 --------------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKK 91 (121)
T ss_dssp --------------------TSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHH
T ss_pred --------------------CCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHH
Confidence 023578999999 999999999999999764446899999999999987 77666554
Q ss_pred E
Q 012301 349 F 349 (466)
Q Consensus 349 ~ 349 (466)
+
T Consensus 92 l 92 (121)
T 1xao_A 92 L 92 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 45
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.85 E-value=1.5e-09 Score=110.16 Aligned_cols=64 Identities=50% Similarity=0.723 Sum_probs=55.2
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhchhhhhccccc
Q 012301 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQ 140 (466)
Q Consensus 77 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 140 (466)
.++|++||+.+.++.++|+++|+++++++|||+.+.+ .+.++|++|.+||++|+|+++|+.||+
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 4899999999999999999999999999999998754 378899999999999999999999997
No 46
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.78 E-value=4.5e-09 Score=96.58 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=68.8
Q ss_pred ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (466)
Q Consensus 193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 272 (466)
+.|.|+.+++.|+|.||+.|+++++..-
T Consensus 90 R~G~DL~~~~~Isl~eAllG~~i~v~tl---------------------------------------------------- 117 (180)
T 2q2g_A 90 RDDCHLIMKVTIPLVRALTGFTCPVTTL---------------------------------------------------- 117 (180)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred EcCCEEEEEEEcCHHHHhCCCEEEeeCC----------------------------------------------------
Confidence 5789999999999999999988776521
Q ss_pred CccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCC-CCCccEEEEEEEEeccccccCCcce
Q 012301 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDL 348 (466)
Q Consensus 273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g-~~~GDLiV~v~v~~~~~f~R~g~dL 348 (466)
+.+.++|.||+|+++|++++++|+|++...+ +..|||||+|+|..|..++.+..++
T Consensus 118 --------------------dG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~ 174 (180)
T 2q2g_A 118 --------------------DNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKL 174 (180)
T ss_dssp --------------------TCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHH
T ss_pred --------------------CCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence 0135788999999999999999999996543 5689999999999998777665443
No 47
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.77 E-value=4.8e-09 Score=96.44 Aligned_cols=84 Identities=21% Similarity=0.274 Sum_probs=69.0
Q ss_pred ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (466)
Q Consensus 193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 272 (466)
+.|.|+.+++.|+|.||+.|++++|..-
T Consensus 90 R~G~DL~~~~~Isl~eAllG~~i~v~tl---------------------------------------------------- 117 (181)
T 3agx_A 90 RDGSDVIYPARISLREALCGCTVNVPTL---------------------------------------------------- 117 (181)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred eeCCcEEEEEEcCHHHHhCCCEEEeECC----------------------------------------------------
Confidence 5789999999999999999998776511
Q ss_pred CccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCC-CCCCccEEEEEEEEeccccccCCcce
Q 012301 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPR-GGPPGDLYVYLDVEEIPGIQRDGIDL 348 (466)
Q Consensus 273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~-g~~~GDLiV~v~v~~~~~f~R~g~dL 348 (466)
+.+.+.|+||+|+++|++++|+|+|++... ++..|||||+|+|..|..++.+..++
T Consensus 118 --------------------dG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~ 174 (181)
T 3agx_A 118 --------------------DGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTV 174 (181)
T ss_dssp --------------------TSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHH
T ss_pred --------------------CCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence 013578899999999999999999999754 35679999999999998877665443
No 48
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.72 E-value=5e-09 Score=95.38 Aligned_cols=84 Identities=21% Similarity=0.322 Sum_probs=69.0
Q ss_pred ccCCceeeeEeeeccccccceeeeEeeeeeeecccccCcccccCcceeecCCCCcccEEEEeeeCCccceeeeeeCCCCC
Q 012301 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (466)
Q Consensus 193 ~~g~di~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 272 (466)
+.|.|+.+++.|+|.||+.|+++++..-
T Consensus 84 R~G~DL~~~~~Isl~eAllG~~~~v~tl---------------------------------------------------- 111 (170)
T 1c3g_A 84 RDGDDLIYTLPLSFKESLLGFSKTIQTI---------------------------------------------------- 111 (170)
T ss_dssp EETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------------------
T ss_pred EeCCcEeEEEEcCHHHHhCCCeEEeeCC----------------------------------------------------
Confidence 5689999999999999999998776511
Q ss_pred CccEEEeeeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCC-CCCccEEEEEEEEeccccccCCcce
Q 012301 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDL 348 (466)
Q Consensus 273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g-~~~GDLiV~v~v~~~~~f~R~g~dL 348 (466)
+.+.++|+||+|+++|++++|+|+|++...+ +..|||||+|+|..|..++.+...|
T Consensus 112 --------------------dG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~ 168 (170)
T 1c3g_A 112 --------------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRA 168 (170)
T ss_dssp --------------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHH
T ss_pred --------------------CCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHh
Confidence 0135788999999999999999999996543 4579999999999998887665543
No 49
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.1e-08 Score=77.90 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=47.3
Q ss_pred ccchhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchh
Q 012301 78 DYYATLGVPKS---ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132 (466)
Q Consensus 78 ~~Y~vLgv~~~---as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 132 (466)
..|+||||+++ ++.++|+++||+|....|||+. ++.....+|++|++.|...
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG---GS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG---GSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHH
Confidence 46899999999 9999999999999999999996 6778899999999999754
No 50
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.44 E-value=2.7e-07 Score=92.45 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=59.3
Q ss_pred cCCcceEEEEeeCHHhhhCCCEEEEecc------CC--------eEEEEeCCCCccCcEEEEccCCCCCCCCCCCCCcEE
Q 012301 343 RDGIDLFSTISISYLDAIMGTVVKVKTV------EG--------ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHL 408 (466)
Q Consensus 343 R~g~dL~~~~~Isl~eAl~G~~~~i~tl------dG--------~~~v~i~~g~~~g~~~~i~g~GmP~~~~~~~~GDL~ 408 (466)
+.|.||.+.+.|+|.||+.|.+.+|..- .| .++|+||+|+++|+++|++|+|.|..++ +..||||
T Consensus 138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~g-g~~GDL~ 216 (329)
T 3lz8_A 138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENG-GPNGDLW 216 (329)
T ss_dssp CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC----CCCCCEE
T ss_pred CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCC-CCCCcEE
Confidence 5678888888999999998887766532 22 3579999999999999999999986543 4689999
Q ss_pred EEEEEECCCCC
Q 012301 409 FTVKVTIPNRI 419 (466)
Q Consensus 409 I~~~V~~P~~l 419 (466)
|+|+|.-...+
T Consensus 217 v~I~v~~h~~F 227 (329)
T 3lz8_A 217 LVIHIAPHPLF 227 (329)
T ss_dssp EEECCCCCSSC
T ss_pred EEEEEecCCcc
Confidence 99988766543
No 51
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=9.5e-06 Score=67.48 Aligned_cols=52 Identities=29% Similarity=0.699 Sum_probs=40.7
Q ss_pred eeeecccccCcccccC-----cceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEeeeeee
Q 012301 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK 284 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 284 (466)
....|+.|+|+|.... ....+|+.|+|.|+++. .+|+.|+|.|.+.+.+-.+
T Consensus 44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~k~l~ 100 (104)
T 2ctt_A 44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII------------SPCVVCRGAGQAKQKKRSG 100 (104)
T ss_dssp CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS------------SCCSSSSSCSEECCCCSSC
T ss_pred CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC------------CcCCCCCCeeEEEEEEEEE
Confidence 3568999999996532 12578999999999875 6899999999987654433
No 52
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.75 E-value=8.3e-06 Score=64.19 Aligned_cols=47 Identities=32% Similarity=0.798 Sum_probs=37.3
Q ss_pred eeeecccccCcccccCc-----ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe
Q 012301 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~-----~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 279 (466)
...+|+.|+|+|..... ...+|+.|+|.|+++. .+|+.|+|.|.+.+
T Consensus 27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~G~~~~ 78 (79)
T 1exk_A 27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVER 78 (79)
T ss_dssp CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEEC
T ss_pred cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC------------CcCCCCCCeEEEee
Confidence 35689999999976421 2468999999998764 68999999998753
No 53
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.52 E-value=2.7e-06 Score=91.99 Aligned_cols=78 Identities=19% Similarity=0.356 Sum_probs=59.8
Q ss_pred eeeEeeeccccccceeeeEeeeeeeecccccCcccccCc---ceeecCCCCcccEEEEe--------eeCCccce-eeee
Q 012301 199 RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS---KMRICSTCGGRGQVMRT--------DQTPFGLF-SQVS 266 (466)
Q Consensus 199 ~~~l~vtl~e~~~G~~~~v~~~~~~~C~~C~GtG~~~~~---~~~~C~~C~G~G~~~~~--------~~~~~G~~-~~~~ 266 (466)
.+++.|+|+|+.+|.++++.+.+.+.|..|+|+|.+.+. ...+|+.|+|....... ..+-.|.| ++..
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 468899999999999999999999999999999998886 57899999998421110 11112333 2336
Q ss_pred eCCCCCCccE
Q 012301 267 VCPSCGGEGE 276 (466)
Q Consensus 267 ~C~~C~G~G~ 276 (466)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 8999998875
No 54
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.16 E-value=5.6e-05 Score=54.85 Aligned_cols=31 Identities=26% Similarity=0.737 Sum_probs=21.1
Q ss_pred eeecccccCcccccCcceeecCCCCcccEEEEee
Q 012301 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD 255 (466)
Q Consensus 222 ~~~C~~C~GtG~~~~~~~~~C~~C~G~G~~~~~~ 255 (466)
...|+.|+|+|.... .+|+.|+|.|+++..+
T Consensus 9 ~~~C~~C~GsG~~~~---~~C~~C~G~G~v~~~q 39 (53)
T 2bx9_A 9 EVACPKCERAGEIEG---TPCPACSGKGVILTAQ 39 (53)
T ss_dssp EEECTTTTTSSEETT---EECTTTTTSSEEECHH
T ss_pred cccCCCCcceeccCC---CCCccCCCCccEEEEe
Confidence 357888888887642 5677777777766543
No 55
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.08 E-value=0.00016 Score=52.47 Aligned_cols=27 Identities=44% Similarity=0.998 Sum_probs=18.5
Q ss_pred eeCCCCCCccEEEeeeeeeccCceEEE
Q 012301 266 SVCPSCGGEGEVISEYCRKCSGEGRIR 292 (466)
Q Consensus 266 ~~C~~C~G~G~~~~~~C~~C~G~G~v~ 292 (466)
.+|+.|+|+|.++.++|..|+|.|.+.
T Consensus 10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 10 TTCPNCNGSGREEPEPCPKCLGKGVIL 36 (53)
T ss_dssp EECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred ccCcCCcccccCCCCcCCCCCCcEEEE
Confidence 567777777777667777777777654
No 56
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.01 E-value=0.00029 Score=51.09 Aligned_cols=28 Identities=32% Similarity=0.926 Sum_probs=15.2
Q ss_pred eecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe
Q 012301 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (466)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 279 (466)
.+|+.|+|+|.++. .+|+.|+|.|.+.+
T Consensus 10 ~~C~~C~GsG~~i~------------~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 10 TTCPNCNGSGREEP------------EPCPKCLGKGVILT 37 (53)
T ss_dssp EECTTTTTSCEETT------------EECTTTTTSSEEEC
T ss_pred ccCcCCcccccCCC------------CcCCCCCCcEEEEE
Confidence 45555555555432 45666666665543
No 57
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.74 E-value=0.00063 Score=49.26 Aligned_cols=29 Identities=28% Similarity=0.878 Sum_probs=18.4
Q ss_pred eeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe
Q 012301 239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (466)
Q Consensus 239 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 279 (466)
..+|+.|+|.|.++. .+|+.|+|.|.++.
T Consensus 9 ~~~C~~C~GsG~~~~------------~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEG------------TPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETT------------EECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCC------------CCCccCCCCccEEE
Confidence 456777777776532 46777777776553
No 58
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=88.61 E-value=0.2 Score=54.24 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=40.2
Q ss_pred ccccCcccchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHH
Q 012301 72 VVCASGDYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEV 128 (466)
Q Consensus 72 ~~~~~~~~Y~vLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~v 128 (466)
+.....|||.+||++.++.. .+|++|||+||+..+++ .+++..|..|+.|
T Consensus 624 ~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 624 LKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp HTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred HHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 44556789999999777655 77999999999966554 5789999999876
No 59
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=49.30 E-value=17 Score=34.70 Aligned_cols=83 Identities=19% Similarity=0.333 Sum_probs=39.3
Q ss_pred eecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEEe-eeeeeccCceEEEeeeEEEEE-----cCCCCcCCcE-EE
Q 012301 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS-EYCRKCSGEGRIRLKKNIKVK-----VPPGVSTGSI-LR 312 (466)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-~~C~~C~G~G~v~~~~~l~V~-----Ip~G~~~G~~-i~ 312 (466)
-.|..|+....+ .+. .+.+..-..|+.|++.|.... +.|. ..+..+++|. +|+|--|-+. +.
T Consensus 135 f~C~~C~~~~~v---~~~-~~~~~~P~~Cp~C~~~~f~l~~~~s~-------f~D~Q~ikiQE~pe~vp~G~~Prsi~V~ 203 (279)
T 1ltl_A 135 FECRGCMRHHAV---TQS-TNMITEPSLCSECGGRSFRLLQDESE-------FLDTQTLKLQEPLENLSGGEQPRQITVV 203 (279)
T ss_dssp EEETTTCCEEEE---ECS-SSSCCCCSCCTTTCCCCEEECGGGCE-------EEEEEEEEEECCSTTCCSSCCCCEEEEE
T ss_pred EEcCCCCCEEEE---Eec-CCcccCCCcCCCCCCCCcEEeccccE-------EEeeEEEEEecCcccCCCCCCCeEEEEE
Confidence 457777643221 221 233333467999998884433 2222 2233455553 3344333322 22
Q ss_pred EccCCCCCCCCCCCccEEEEEEEE
Q 012301 313 VVGEGDAGPRGGPPGDLYVYLDVE 336 (466)
Q Consensus 313 l~g~G~~~~~g~~~GDLiV~v~v~ 336 (466)
+. ++- .+...|||-+...=|-
T Consensus 204 l~--~dL-vd~~~PGDrV~vtGI~ 224 (279)
T 1ltl_A 204 LE--DDL-VDTLTPGDIVRVTGTL 224 (279)
T ss_dssp EE--GGG-TTCCCTTCEEEEEEEE
T ss_pred Ec--ccc-cCccCCCCEEEEEEEE
Confidence 32 221 1245688887755443
No 60
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=40.77 E-value=89 Score=31.48 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=18.4
Q ss_pred CEEEEeccCCeEEEEeCCCCccCcEEEEcc
Q 012301 363 TVVKVKTVEGISELQVPPGTQPGDVLVLAK 392 (466)
Q Consensus 363 ~~~~i~tldG~~~v~i~~g~~~g~~~~i~g 392 (466)
+.+.|+-|+ +.|++|++.|..-.|.|
T Consensus 295 a~i~IPEL~----lei~pg~~~G~~TTVEG 320 (404)
T 2qkd_A 295 CSVEIPELE----FELGMAVLGGKFTTLEG 320 (404)
T ss_dssp CEEEEGGGT----EEECTTTTCSEEEEHHH
T ss_pred eEEEeeeee----EEecCCCCCceEEeHHH
Confidence 456666655 77888887787777765
No 61
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=35.17 E-value=52 Score=31.20 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=35.6
Q ss_pred eeeCCCCCCccEEEe--------eeeeeccCceEEEeeeEEEEEcCCCCcCCcEEEEccCCCCCCCCCCCccEEEE
Q 012301 265 VSVCPSCGGEGEVIS--------EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVY 332 (466)
Q Consensus 265 ~~~C~~C~G~G~~~~--------~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDLiV~ 332 (466)
...|..|+....+.. ..|+.|.+.|....... .-..|=|+|+|.-.-+..+.|..|.-+-|.
T Consensus 134 ~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~f~l~~~~------s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~ 203 (279)
T 1ltl_A 134 VFECRGCMRHHAVTQSTNMITEPSLCSECGGRSFRLLQDE------SEFLDTQTLKLQEPLENLSGGEQPRQITVV 203 (279)
T ss_dssp EEEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEEECGGG------CEEEEEEEEEEECCSTTCCSSCCCCEEEEE
T ss_pred EEEcCCCCCEEEEEecCCcccCCCcCCCCCCCCcEEeccc------cEEEeeEEEEEecCcccCCCCCCCeEEEEE
Confidence 368999986654332 37999988763322110 013466788887765554545555444443
No 62
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=32.76 E-value=2e+02 Score=26.77 Aligned_cols=85 Identities=18% Similarity=0.278 Sum_probs=41.2
Q ss_pred eeec--CCCCcccEEEEee--eCCccceeeeeeCCCCCCccEEE-e-eeeeeccCceEEEeeeEEEE-----EcCCCCcC
Q 012301 239 MRIC--STCGGRGQVMRTD--QTPFGLFSQVSVCPSCGGEGEVI-S-EYCRKCSGEGRIRLKKNIKV-----KVPPGVST 307 (466)
Q Consensus 239 ~~~C--~~C~G~G~~~~~~--~~~~G~~~~~~~C~~C~G~G~~~-~-~~C~~C~G~G~v~~~~~l~V-----~Ip~G~~~ 307 (466)
.-.| ..|+.. +... ....+.+..-..|+.|.+.|... . +.|. ..+..+++| .+|+|--|
T Consensus 141 ~f~C~~~~C~~~---~~~~~~~~~~~~~~~P~~Cp~C~~~~~~~l~~~~s~-------f~D~Q~ikiQE~pe~vp~G~~P 210 (268)
T 2vl6_A 141 TYKHIHPDCMQE---FEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTK-------LIDWQKAVIQERPEEVPSGQLP 210 (268)
T ss_dssp EEEEECTTCCCE---EESSTTSCCCTTCCCCSBCTTTCCBCEEEECGGGCE-------EEEEEEEEEECCGGGSCTTSCC
T ss_pred EEECCCCCCCCE---EeeeecccCCCcccCCccCCCCCCCCCEEEecCccE-------EEeeEEEEEEeCCCCCCCCCCC
Confidence 4579 899742 2222 01233344447899999987332 2 2222 223344555 34555444
Q ss_pred CcEEEEccCCCCCCCCCCCccEEEEEEE
Q 012301 308 GSILRVVGEGDAGPRGGPPGDLYVYLDV 335 (466)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDLiV~v~v 335 (466)
-+..++ =.++- .+...|||-+...=|
T Consensus 211 rsi~v~-l~~dL-vd~~~PGDrV~vtGI 236 (268)
T 2vl6_A 211 RQLEII-LEDDL-VDSARPGDRVKVTGI 236 (268)
T ss_dssp CEEEEE-EEGGG-TTSSCTTCEEEEEEE
T ss_pred cEEEEE-EccCc-cCcccCCCEEEEEEE
Confidence 332222 12221 124567888775444
No 63
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=28.05 E-value=36 Score=26.66 Aligned_cols=24 Identities=13% Similarity=0.362 Sum_probs=21.4
Q ss_pred EEECCCCCCHHHHHHHHHHHhhcC
Q 012301 412 KVTIPNRISAKERELLEELASLRN 435 (466)
Q Consensus 412 ~V~~P~~ls~~~~~ll~~l~~~~~ 435 (466)
.+.||..|+..||.++-++++.+.
T Consensus 35 ~l~FP~sLs~~eR~~IH~lA~~~G 58 (86)
T 1msz_A 35 QLEFPPSLNSHDRLRVHQIAEEHG 58 (86)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCHHHHHHHHHHHHHcC
Confidence 689999999999999999987654
No 64
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=25.75 E-value=63 Score=24.16 Aligned_cols=53 Identities=21% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH--HHHHhch-hhhhccccccc
Q 012301 88 SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISA--AYEVLSD-DKKRAMYDQYG 142 (466)
Q Consensus 88 ~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~--Ay~vL~d-~~~R~~yd~~g 142 (466)
-+|.+|.+++|++|...++-+.. ..=.+....|.. -|.+|.+ .+++++|+.|-
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~--~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSN--ASWEQAMKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTT--CCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCC--CCHHHHHHHHccCccccccCCHHHHHHHHHHHH
Confidence 46899999999999998754332 111111222221 2667765 45557777764
No 65
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=25.68 E-value=29 Score=26.88 Aligned_cols=54 Identities=17% Similarity=0.373 Sum_probs=26.6
Q ss_pred eeeecccccCcccccCc--ceeecCCCCcccEEEEeeeCCccceeeeeeCCCCCCccEEE
Q 012301 221 HLETCEVCTGTGAKMGS--KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI 278 (466)
Q Consensus 221 ~~~~C~~C~GtG~~~~~--~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 278 (466)
+.+.|..|+..|-.... ....|..|+..|.+.+....+. ....|-.|+..|.+-
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~----~~~~CYnCG~~GH~~ 59 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPF----HTIYCYNCGGKGHFG 59 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC-----------------CCCBCSSSSCBSSCG
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccCCC----CCCeecccCCCCcCc
Confidence 34679999988865432 1346888888876543221111 126799999988754
No 66
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=25.16 E-value=54 Score=24.94 Aligned_cols=53 Identities=15% Similarity=0.389 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHHHhch-hhhhcccccccc
Q 012301 90 SGKEIKAAYRKLARQYHPDVNKE---PGATEKFKEISAAYEVLSD-DKKRAMYDQYGE 143 (466)
Q Consensus 90 s~~eIk~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d-~~~R~~yd~~g~ 143 (466)
-...++.+|+.+.+...|..... ..+..+|..-. +|..+.+ ..++.+|+.|-.
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi~ 63 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFMH 63 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHHH
Confidence 34668889999999888877653 23455565555 7988865 567789998853
No 67
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=24.85 E-value=1.7e+02 Score=22.33 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhhhhccccc
Q 012301 95 KAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (466)
Q Consensus 95 k~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 140 (466)
.+.+|...+.-||+.. ..+.-+.|.+.|.-|++.++...++.
T Consensus 32 ~~~~r~~~k~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~ 73 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS----ESELTRLLARMWNDLSEKKKAKYKAR 73 (90)
T ss_dssp HHHTHHHHHHHCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5567777888899853 56778899999999998887665554
No 68
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=21.46 E-value=71 Score=32.24 Aligned_cols=77 Identities=18% Similarity=0.370 Sum_probs=39.3
Q ss_pred eeecCCCCcccEEEE-eeeCC-ccc-eeeeeeCCCCCCccEEEee----------eeeeccCce-----EE------Eee
Q 012301 239 MRICSTCGGRGQVMR-TDQTP-FGL-FSQVSVCPSCGGEGEVISE----------YCRKCSGEG-----RI------RLK 294 (466)
Q Consensus 239 ~~~C~~C~G~G~~~~-~~~~~-~G~-~~~~~~C~~C~G~G~~~~~----------~C~~C~G~G-----~v------~~~ 294 (466)
...|+.|+..|.... ...+| |+- +.+...|+.|+=+-.-+.. ...++.... .+ ..-
T Consensus 12 ~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~pkG~r~tL~V~~~~DLnr~VvKS~tati~I 91 (404)
T 2qkd_A 12 ESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTVRSQEDMNREVVKTDSATTRI 91 (404)
T ss_dssp EEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCSSEEEEEEEECSHHHHTCEEEECTTCEEEE
T ss_pred cccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCCCcEEEEEEECChhcccceEEEcCCcEEEe
Confidence 467888887775432 12233 442 2345789999755332210 111111100 01 111
Q ss_pred eEEEEEcCCCCcCCcEEEEcc
Q 012301 295 KNIKVKVPPGVSTGSILRVVG 315 (466)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~g 315 (466)
-+|.+.||||...|..-.+.|
T Consensus 92 PEL~~eI~pg~~~G~iTTVEG 112 (404)
T 2qkd_A 92 PELDFEIPAFSQKGALTTVEG 112 (404)
T ss_dssp GGGTEEECTTSSCCEEEEHHH
T ss_pred eeeeEEecCccCCceEEeHHH
Confidence 235678899998887766644
No 69
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.16 E-value=86 Score=22.68 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchHHHHHHH---HHHHHHhch-hh-hhccccccc
Q 012301 92 KEIKAAYRKLARQYHPDVNKEPGATEKFKEI---SAAYEVLSD-DK-KRAMYDQYG 142 (466)
Q Consensus 92 ~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i---~~Ay~vL~d-~~-~R~~yd~~g 142 (466)
+|..+||.+|.+...=|.. -.=++..+.| ..-|-+|.| |. ++++|+.|-
T Consensus 3 eEae~aF~~lL~~~~V~s~--wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~ 56 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST--WSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL 56 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS--CCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC--CcHHHHHHHhccCCCccccccCCHHHHHHHHHHHH
Confidence 5788999999987754432 1223445555 345999997 65 667888874
Done!