Query 012303
Match_columns 466
No_of_seqs 333 out of 1584
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 01:12:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 1.2E-78 2.6E-83 638.7 22.6 253 95-363 256-524 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 1E-70 2.2E-75 541.1 20.5 223 106-353 19-254 (254)
3 PF07002 Copine: Copine; Inte 100.0 3.4E-48 7.5E-53 353.3 14.9 137 149-297 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 100.0 1.9E-31 4.2E-36 253.9 18.1 197 125-362 2-200 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.8 2.3E-19 4.9E-24 169.2 11.0 168 126-329 4-186 (199)
6 KOG4172 Predicted E3 ubiquitin 98.9 9.8E-11 2.1E-15 90.3 -2.4 46 421-466 8-60 (62)
7 smart00327 VWA von Willebrand 98.8 3.2E-08 7E-13 88.3 10.3 150 125-313 2-160 (177)
8 PF13920 zf-C3HC4_3: Zinc fing 98.8 1E-09 2.2E-14 82.6 -0.4 43 420-462 2-50 (50)
9 cd01461 vWA_interalpha_trypsin 98.7 1.7E-07 3.7E-12 84.5 11.8 147 125-309 3-150 (171)
10 KOG1571 Predicted E3 ubiquitin 98.7 3.8E-09 8.3E-14 108.2 0.4 46 421-466 306-353 (355)
11 cd01463 vWA_VGCC_like VWA Volt 98.6 3.9E-07 8.5E-12 85.3 11.6 147 125-308 14-176 (190)
12 KOG4275 Predicted E3 ubiquitin 98.6 4.7E-09 1E-13 104.9 -2.0 47 420-466 300-348 (350)
13 cd01471 vWA_micronemal_protein 98.6 6E-07 1.3E-11 83.2 11.2 169 125-327 1-178 (186)
14 cd00198 vWFA Von Willebrand fa 98.5 1.2E-06 2.6E-11 75.6 12.2 146 126-309 2-153 (161)
15 KOG4265 Predicted E3 ubiquitin 98.5 2.4E-08 5.2E-13 102.3 1.0 49 418-466 288-342 (349)
16 cd01464 vWA_subfamily VWA subf 98.5 8.3E-07 1.8E-11 82.0 9.5 144 125-310 4-160 (176)
17 cd01466 vWA_C3HC4_type VWA C3H 98.4 1.7E-06 3.6E-11 78.7 10.3 141 126-309 2-145 (155)
18 cd01450 vWFA_subfamily_ECM Von 98.4 1.8E-06 4E-11 76.2 10.2 145 126-309 2-153 (161)
19 PF13519 VWA_2: von Willebrand 98.3 4.4E-06 9.5E-11 74.2 10.5 139 126-301 1-139 (172)
20 cd01454 vWA_norD_type norD typ 98.3 1.1E-05 2.4E-10 74.2 13.4 150 126-300 2-154 (174)
21 cd01465 vWA_subgroup VWA subgr 98.3 1.6E-05 3.5E-10 71.7 13.5 146 125-307 1-149 (170)
22 PLN03208 E3 ubiquitin-protein 98.2 3.9E-07 8.5E-12 87.2 1.7 45 417-461 15-80 (193)
23 KOG2164 Predicted E3 ubiquitin 98.2 5.1E-07 1.1E-11 96.3 1.9 42 420-461 186-237 (513)
24 KOG0320 Predicted E3 ubiquitin 98.1 4E-07 8.7E-12 85.7 -0.2 42 421-462 132-180 (187)
25 cd01456 vWA_ywmD_type VWA ywmD 98.1 1.3E-05 2.7E-10 76.1 9.9 152 125-299 21-179 (206)
26 KOG0823 Predicted E3 ubiquitin 98.1 6.3E-07 1.4E-11 87.5 0.7 49 418-466 45-103 (230)
27 cd01470 vWA_complement_factors 98.1 3E-05 6.4E-10 73.0 11.5 153 125-309 1-176 (198)
28 cd01482 vWA_collagen_alphaI-XI 98.1 2.8E-05 6.1E-10 71.0 10.9 142 126-309 2-151 (164)
29 PHA02929 N1R/p28-like protein; 98.1 1E-06 2.3E-11 86.9 1.5 47 418-464 172-231 (238)
30 cd01473 vWA_CTRP CTRP for CS 98.1 7.8E-05 1.7E-09 70.8 14.0 170 126-328 2-180 (192)
31 TIGR03788 marine_srt_targ mari 98.0 3.1E-05 6.7E-10 85.3 11.9 145 125-308 272-418 (596)
32 cd01472 vWA_collagen von Wille 98.0 4.4E-05 9.5E-10 69.4 10.9 141 126-309 2-151 (164)
33 cd01476 VWA_integrin_invertebr 98.0 9.9E-05 2.1E-09 66.6 13.0 135 125-300 1-143 (163)
34 KOG0317 Predicted E3 ubiquitin 98.0 1.6E-06 3.5E-11 87.0 1.2 43 419-461 238-285 (293)
35 PF15227 zf-C3HC4_4: zinc fing 97.9 1.8E-06 3.8E-11 63.4 -0.7 33 423-455 1-42 (42)
36 cd01467 vWA_BatA_type VWA BatA 97.9 0.00013 2.9E-09 66.7 11.4 140 125-298 3-142 (180)
37 PF13768 VWA_3: von Willebrand 97.9 7.6E-05 1.6E-09 67.1 9.4 142 126-307 2-145 (155)
38 PHA02926 zinc finger-like prot 97.9 3.4E-06 7.3E-11 82.2 0.7 46 418-463 168-233 (242)
39 cd01462 VWA_YIEM_type VWA YIEM 97.8 0.00035 7.7E-09 62.5 13.0 133 126-299 2-135 (152)
40 cd01480 vWA_collagen_alpha_1-V 97.8 0.00015 3.2E-09 67.9 10.5 146 125-308 3-160 (186)
41 TIGR00599 rad18 DNA repair pro 97.8 8.1E-06 1.7E-10 86.0 1.9 49 413-461 19-72 (397)
42 PF00092 VWA: von Willebrand f 97.8 6.5E-05 1.4E-09 67.5 7.2 109 126-261 1-117 (178)
43 PF13923 zf-C3HC4_2: Zinc fing 97.8 3.5E-06 7.7E-11 60.3 -1.0 33 423-455 1-39 (39)
44 cd01474 vWA_ATR ATR (Anthrax T 97.7 0.00021 4.5E-09 66.7 9.4 146 125-309 5-155 (185)
45 PTZ00441 sporozoite surface pr 97.7 0.00045 9.8E-09 75.8 13.2 141 125-299 43-189 (576)
46 PF14634 zf-RING_5: zinc-RING 97.7 1.3E-05 2.8E-10 59.0 0.9 36 422-457 1-44 (44)
47 COG5574 PEX10 RING-finger-cont 97.7 1.1E-05 2.3E-10 80.3 0.3 43 419-461 214-263 (271)
48 KOG0978 E3 ubiquitin ligase in 97.6 1.1E-05 2.5E-10 89.5 0.2 43 419-461 642-690 (698)
49 cd01475 vWA_Matrilin VWA_Matri 97.6 0.00047 1E-08 66.4 10.7 141 125-308 3-155 (224)
50 smart00504 Ubox Modified RING 97.6 2.6E-05 5.6E-10 60.4 1.2 41 421-461 2-47 (63)
51 cd01477 vWA_F09G8-8_type VWA F 97.6 0.00093 2E-08 63.8 11.8 139 125-299 20-172 (193)
52 cd01451 vWA_Magnesium_chelatas 97.6 0.0014 3E-08 60.9 12.7 145 127-307 3-153 (178)
53 cd01453 vWA_transcription_fact 97.5 0.001 2.2E-08 62.8 11.6 139 125-299 4-147 (183)
54 PF13639 zf-RING_2: Ring finge 97.5 1.6E-05 3.5E-10 58.1 -0.6 35 422-456 2-44 (44)
55 cd01469 vWA_integrins_alpha_su 97.5 0.0012 2.7E-08 61.3 11.2 135 125-299 1-143 (177)
56 cd00162 RING RING-finger (Real 97.5 5.3E-05 1.1E-09 53.4 1.5 38 422-459 1-45 (45)
57 KOG1100 Predicted E3 ubiquitin 97.4 4.8E-05 1E-09 73.9 1.4 44 423-466 161-206 (207)
58 PRK13685 hypothetical protein; 97.4 0.0021 4.5E-08 65.9 13.2 143 125-299 89-239 (326)
59 cd01460 vWA_midasin VWA_Midasi 97.4 0.0018 3.9E-08 65.2 12.5 138 125-299 61-205 (266)
60 KOG1785 Tyrosine kinase negati 97.4 3.5E-05 7.6E-10 80.4 -0.2 43 421-463 370-419 (563)
61 PF00097 zf-C3HC4: Zinc finger 97.4 2.9E-05 6.3E-10 55.6 -0.8 33 423-455 1-41 (41)
62 PF09967 DUF2201: VWA-like dom 97.3 0.0014 3.1E-08 58.6 8.7 120 127-306 1-124 (126)
63 smart00184 RING Ring finger. E 97.2 0.00013 2.8E-09 49.5 1.3 33 423-455 1-39 (39)
64 cd01455 vWA_F11C1-5a_type Von 97.2 0.0032 7E-08 60.6 10.7 156 126-306 2-160 (191)
65 cd01481 vWA_collagen_alpha3-VI 97.2 0.0052 1.1E-07 57.0 11.4 141 126-309 2-154 (165)
66 cd01458 vWA_ku Ku70/Ku80 N-ter 97.1 0.0095 2.1E-07 57.2 13.5 155 126-300 3-174 (218)
67 KOG0287 Postreplication repair 97.0 7.2E-05 1.6E-09 76.8 -2.1 48 414-461 17-69 (442)
68 PRK13406 bchD magnesium chelat 97.0 0.0082 1.8E-07 66.6 13.3 166 125-327 402-570 (584)
69 PF13445 zf-RING_UBOX: RING-ty 97.0 0.0001 2.2E-09 54.7 -1.2 26 423-449 1-31 (43)
70 KOG4692 Predicted E3 ubiquitin 96.9 0.00034 7.4E-09 72.3 1.7 46 418-463 420-470 (489)
71 TIGR02031 BchD-ChlD magnesium 96.9 0.016 3.5E-07 64.3 14.1 155 125-309 408-571 (589)
72 PF14835 zf-RING_6: zf-RING of 96.8 0.00079 1.7E-08 54.1 2.6 43 419-461 6-52 (65)
73 TIGR03436 acidobact_VWFA VWFA- 96.7 0.017 3.7E-07 57.7 12.0 136 122-298 52-204 (296)
74 cd01452 VWA_26S_proteasome_sub 96.7 0.017 3.7E-07 55.4 11.3 161 127-326 6-174 (187)
75 COG5432 RAD18 RING-finger-cont 96.7 0.00033 7.1E-09 70.8 -0.4 45 416-460 21-70 (391)
76 COG5236 Uncharacterized conser 96.7 0.00048 1.1E-08 71.0 0.3 50 413-462 54-110 (493)
77 KOG2879 Predicted E3 ubiquitin 96.5 0.0016 3.4E-08 65.5 2.8 43 418-460 237-287 (298)
78 KOG3002 Zn finger protein [Gen 96.5 0.0011 2.3E-08 67.9 1.6 44 418-461 46-92 (299)
79 TIGR02442 Cob-chelat-sub cobal 96.4 0.058 1.2E-06 60.4 14.2 141 125-299 466-611 (633)
80 KOG0311 Predicted E3 ubiquitin 96.3 0.00026 5.6E-09 73.1 -4.4 47 417-463 40-93 (381)
81 PF04564 U-box: U-box domain; 96.1 0.001 2.2E-08 54.1 -0.8 44 419-462 3-52 (73)
82 PF14447 Prok-RING_4: Prokaryo 96.0 0.0031 6.7E-08 49.2 1.5 43 419-461 6-51 (55)
83 COG5243 HRD1 HRD ubiquitin lig 95.9 0.0021 4.6E-08 67.0 0.2 42 418-459 285-344 (491)
84 KOG0804 Cytoplasmic Zn-finger 95.9 0.0039 8.5E-08 66.3 2.1 48 413-460 168-222 (493)
85 PF12678 zf-rbx1: RING-H2 zinc 95.7 0.0027 5.9E-08 51.8 -0.0 36 421-456 20-73 (73)
86 COG5540 RING-finger-containing 95.7 0.0025 5.5E-08 64.9 -0.3 41 420-460 323-372 (374)
87 KOG4628 Predicted E3 ubiquitin 95.6 0.0043 9.4E-08 64.6 1.0 42 421-462 230-280 (348)
88 TIGR00868 hCaCC calcium-activa 95.6 0.094 2E-06 60.7 11.6 140 127-307 307-449 (863)
89 PRK10997 yieM hypothetical pro 95.6 0.22 4.8E-06 54.4 13.8 144 125-309 324-469 (487)
90 PF05762 VWA_CoxE: VWA domain 95.5 0.16 3.5E-06 49.4 11.2 120 125-284 58-178 (222)
91 KOG1039 Predicted E3 ubiquitin 95.3 0.0081 1.8E-07 62.6 1.7 46 418-463 159-224 (344)
92 KOG0802 E3 ubiquitin ligase [P 95.2 0.004 8.8E-08 68.3 -1.0 42 418-459 289-340 (543)
93 KOG4159 Predicted E3 ubiquitin 94.9 0.0092 2E-07 63.4 0.7 45 417-461 81-130 (398)
94 PF14570 zf-RING_4: RING/Ubox 93.5 0.026 5.7E-07 43.0 0.6 37 423-459 1-47 (48)
95 KOG1813 Predicted E3 ubiquitin 92.8 0.047 1E-06 55.7 1.2 42 422-463 243-289 (313)
96 KOG0297 TNF receptor-associate 92.5 0.083 1.8E-06 56.0 2.7 47 417-463 18-70 (391)
97 KOG0825 PHD Zn-finger protein 92.2 0.021 4.5E-07 64.5 -2.4 44 420-463 123-174 (1134)
98 KOG1001 Helicase-like transcri 91.4 0.049 1.1E-06 61.5 -0.5 40 421-461 455-501 (674)
99 COG5152 Uncharacterized conser 91.4 0.047 1E-06 53.0 -0.6 41 421-461 197-242 (259)
100 COG5175 MOT2 Transcriptional r 91.3 0.069 1.5E-06 55.5 0.4 44 418-461 12-65 (480)
101 KOG3039 Uncharacterized conser 91.1 0.083 1.8E-06 52.8 0.8 44 419-462 220-272 (303)
102 KOG2177 Predicted E3 ubiquitin 91.1 0.073 1.6E-06 50.4 0.4 25 433-457 27-55 (386)
103 PF12861 zf-Apc11: Anaphase-pr 90.8 0.1 2.2E-06 44.4 0.9 26 436-461 51-83 (85)
104 KOG0828 Predicted E3 ubiquitin 90.3 0.07 1.5E-06 57.7 -0.5 44 418-461 569-635 (636)
105 COG2425 Uncharacterized protei 88.1 5 0.00011 43.5 11.4 135 120-295 269-405 (437)
106 KOG2660 Locus-specific chromos 87.7 0.14 3.1E-06 52.9 -0.4 47 417-463 12-64 (331)
107 PF04641 Rtf2: Rtf2 RING-finge 87.7 0.22 4.8E-06 49.8 0.9 44 418-461 111-162 (260)
108 KOG1002 Nucleotide excision re 87.5 0.13 2.8E-06 56.2 -0.9 43 418-460 534-586 (791)
109 KOG0826 Predicted E3 ubiquitin 85.8 0.45 9.8E-06 49.4 2.0 41 418-458 298-344 (357)
110 PF03731 Ku_N: Ku70/Ku80 N-ter 84.8 14 0.00031 35.2 11.7 145 127-296 2-172 (224)
111 PF11789 zf-Nse: Zinc-finger o 84.3 0.28 6.1E-06 38.5 -0.3 36 419-454 10-53 (57)
112 COG1240 ChlD Mg-chelatase subu 83.0 7.3 0.00016 39.5 9.0 145 120-300 74-224 (261)
113 KOG1814 Predicted E3 ubiquitin 82.4 0.38 8.2E-06 51.3 -0.3 28 421-448 185-216 (445)
114 PF04710 Pellino: Pellino; In 79.3 0.61 1.3E-05 49.6 0.0 42 420-461 328-402 (416)
115 KOG3842 Adaptor protein Pellin 79.2 1 2.2E-05 46.7 1.6 43 419-461 340-415 (429)
116 COG4245 TerY Uncharacterized p 77.7 4.3 9.4E-05 39.6 5.2 138 126-308 5-159 (207)
117 PF10367 Vps39_2: Vacuolar sor 75.5 1.7 3.6E-05 36.6 1.6 31 418-448 76-109 (109)
118 COG5222 Uncharacterized conser 74.0 1.2 2.6E-05 45.9 0.5 37 421-457 275-318 (427)
119 KOG2932 E3 ubiquitin ligase in 73.1 1.2 2.6E-05 46.1 0.2 27 436-462 108-136 (389)
120 KOG1428 Inhibitor of type V ad 71.2 1 2.3E-05 54.4 -0.8 44 418-461 3484-3545(3738)
121 KOG4362 Transcriptional regula 69.7 1.2 2.6E-05 50.4 -0.7 45 418-462 19-71 (684)
122 KOG3799 Rab3 effector RIM1 and 69.5 1.8 3.9E-05 39.9 0.5 38 418-459 63-117 (169)
123 PF11775 CobT_C: Cobalamin bio 69.0 14 0.0003 36.7 6.5 51 246-298 134-187 (219)
124 PF05290 Baculo_IE-1: Baculovi 67.7 1.5 3.2E-05 40.3 -0.4 41 422-462 82-134 (140)
125 TIGR00578 ku70 ATP-dependent D 64.6 74 0.0016 35.8 11.9 152 126-297 12-182 (584)
126 KOG1493 Anaphase-promoting com 64.6 1.9 4E-05 36.2 -0.4 39 422-460 33-81 (84)
127 PF02891 zf-MIZ: MIZ/SP-RING z 61.8 2.9 6.3E-05 31.8 0.2 38 421-458 3-50 (50)
128 COG5219 Uncharacterized conser 61.1 2.7 5.9E-05 49.2 0.0 44 418-461 1467-1524(1525)
129 KOG2068 MOT2 transcription fac 60.6 9.7 0.00021 39.8 3.8 42 421-462 250-300 (327)
130 PF03854 zf-P11: P-11 zinc fin 59.9 2.6 5.6E-05 32.4 -0.3 42 422-464 4-50 (50)
131 PF10272 Tmpp129: Putative tra 59.4 5.6 0.00012 42.1 1.9 10 451-460 342-351 (358)
132 PF11793 FANCL_C: FANCL C-term 58.9 3.7 7.9E-05 33.3 0.4 43 420-462 2-68 (70)
133 KOG2113 Predicted RNA binding 58.8 5.2 0.00011 41.7 1.5 46 420-465 343-392 (394)
134 KOG2113 Predicted RNA binding 57.4 7.7 0.00017 40.5 2.4 48 418-465 134-188 (394)
135 KOG2353 L-type voltage-depende 56.6 1.1E+02 0.0025 37.1 12.1 147 125-305 226-382 (1104)
136 KOG1734 Predicted RING-contain 54.4 5.4 0.00012 40.8 0.8 43 419-461 223-282 (328)
137 PHA03096 p28-like protein; Pro 53.1 4.2 9.1E-05 41.7 -0.2 29 421-449 179-216 (284)
138 COG4548 NorD Nitric oxide redu 50.6 40 0.00087 37.8 6.6 170 125-323 447-619 (637)
139 KOG2817 Predicted E3 ubiquitin 49.9 6.1 0.00013 42.2 0.4 38 421-458 335-383 (394)
140 TIGR01651 CobT cobaltochelatas 44.8 51 0.0011 37.3 6.5 62 234-299 502-568 (600)
141 KOG0298 DEAD box-containing he 41.4 3.8 8.1E-05 49.4 -3.0 42 418-459 1151-1198(1394)
142 PF04131 NanE: Putative N-acet 40.0 2.4E+02 0.0051 27.7 9.4 97 109-261 53-155 (192)
143 PF05883 Baculo_RING: Baculovi 39.9 5 0.00011 36.9 -1.8 30 420-449 26-65 (134)
144 PF00113 Enolase_C: Enolase, C 38.9 1.7E+02 0.0037 30.2 8.9 156 103-294 76-234 (295)
145 KOG3579 Predicted E3 ubiquitin 38.4 17 0.00037 37.5 1.5 27 421-447 269-300 (352)
146 KOG4445 Uncharacterized conser 38.3 4.6 9.9E-05 41.9 -2.6 27 421-447 116-146 (368)
147 PF04811 Sec23_trunk: Sec23/Se 37.5 3.9E+02 0.0085 25.9 12.9 155 126-300 5-203 (243)
148 cd03313 enolase Enolase: Enola 36.9 2.6E+02 0.0056 30.0 10.2 65 105-175 211-278 (408)
149 PLN00191 enolase 36.3 3.1E+02 0.0068 30.1 10.8 70 105-175 241-312 (457)
150 KOG1812 Predicted E3 ubiquitin 36.2 16 0.00035 38.9 1.0 29 420-448 146-179 (384)
151 PF02601 Exonuc_VII_L: Exonucl 35.3 1.1E+02 0.0023 31.3 6.7 83 206-299 26-117 (319)
152 PF06415 iPGM_N: BPG-independe 35.1 76 0.0016 31.6 5.4 56 231-297 13-71 (223)
153 COG1488 PncB Nicotinic acid ph 32.5 1.6E+02 0.0034 31.8 7.7 73 207-298 248-324 (405)
154 PF04216 FdhE: Protein involve 32.1 13 0.00028 37.7 -0.5 46 418-463 170-225 (290)
155 smart00744 RINGv The RING-vari 31.8 14 0.00031 27.9 -0.2 35 422-456 1-49 (49)
156 TIGR01562 FdhE formate dehydro 30.9 35 0.00077 35.4 2.4 40 419-458 183-233 (305)
157 PF07191 zinc-ribbons_6: zinc- 30.3 12 0.00026 30.8 -0.8 37 421-460 2-41 (70)
158 PRK03564 formate dehydrogenase 28.8 44 0.00096 34.8 2.7 39 419-457 186-234 (309)
159 COG3959 Transketolase, N-termi 28.6 57 0.0012 32.8 3.3 69 209-290 89-171 (243)
160 PF14871 GHL6: Hypothetical gl 26.9 2.1E+02 0.0046 25.9 6.5 68 108-180 44-129 (132)
161 KOG2114 Vacuolar assembly/sort 26.7 22 0.00047 41.5 0.0 42 421-462 841-885 (933)
162 COG5194 APC11 Component of SCF 26.0 27 0.00057 29.8 0.4 25 436-460 53-81 (88)
163 KOG3161 Predicted E3 ubiquitin 25.2 22 0.00049 40.4 -0.2 25 431-456 26-53 (861)
164 KOG0183 20S proteasome, regula 24.8 3.7E+02 0.0081 27.0 8.0 38 97-146 92-129 (249)
165 PLN02189 cellulose synthase 24.6 43 0.00094 40.1 1.9 40 421-460 35-87 (1040)
166 KOG3842 Adaptor protein Pellin 24.6 34 0.00074 35.9 1.0 26 433-458 318-350 (429)
167 PF10217 DUF2039: Uncharacteri 24.4 18 0.00039 31.3 -0.9 35 421-458 56-90 (92)
168 KOG2807 RNA polymerase II tran 24.3 4.1E+02 0.0089 28.3 8.6 145 119-298 56-203 (378)
169 PRK04023 DNA polymerase II lar 23.9 85 0.0018 37.7 4.1 44 418-461 624-675 (1121)
170 PF01363 FYVE: FYVE zinc finge 23.6 32 0.0007 27.0 0.5 30 419-448 8-42 (69)
171 PF10083 DUF2321: Uncharacteri 23.1 19 0.0004 34.1 -1.1 26 438-463 27-53 (158)
172 PRK00286 xseA exodeoxyribonucl 23.0 2E+02 0.0044 30.7 6.6 36 274-309 178-213 (438)
173 PF10571 UPF0547: Uncharacteri 21.8 61 0.0013 21.6 1.5 20 422-441 2-24 (26)
174 PRK14714 DNA polymerase II lar 21.3 77 0.0017 38.9 3.1 41 421-462 668-722 (1337)
175 TIGR00237 xseA exodeoxyribonuc 21.2 2E+02 0.0044 31.0 6.1 67 231-310 140-209 (432)
176 COG4306 Uncharacterized protei 21.1 30 0.00064 31.9 -0.2 23 440-462 29-52 (160)
177 PF02601 Exonuc_VII_L: Exonucl 20.9 4E+02 0.0087 27.0 7.9 66 232-310 26-97 (319)
178 KOG1815 Predicted E3 ubiquitin 20.1 39 0.00084 36.5 0.3 30 419-448 69-100 (444)
179 cd08550 GlyDH-like Glycerol_de 20.0 2.8E+02 0.0062 28.6 6.7 19 224-242 28-46 (349)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-78 Score=638.75 Aligned_cols=253 Identities=47% Similarity=0.701 Sum_probs=236.4
Q ss_pred HhhhcccccccccccHHHHHHHHHhcCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCC-CCCHHHHHHHHHhhcccc
Q 012303 95 KLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSS 173 (466)
Q Consensus 95 ~~~~~~~~i~~~ys~ld~v~~al~~~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~-~~N~Ye~AI~~Ig~vL~~ 173 (466)
+++.++..+.++|+++++++.++..+|++++||+||||||+||+|+|.+ .|||||++ .+|+||+||++||+||++
T Consensus 256 ~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~----sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ 331 (529)
T KOG1327|consen 256 SYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNP----SSLHYIDPHQPNPYEQAIRSVGETLQD 331 (529)
T ss_pred cccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCC----CcceecCCCCCCHHHHHHHHHhhhhcc
Confidence 4566899999999999999999999999999999999999999998765 49999996 789999999999999999
Q ss_pred cCCCCccceEeeCCCCCC---CCc--ccccCCCCCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcC---
Q 012303 174 FDEDNLIPCFGFGDASTH---DQE--VFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--- 245 (466)
Q Consensus 174 yD~D~~ip~fGFGa~~~~---~~~--vF~f~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~--- 245 (466)
||+||+||||||||+.+. .++ +|+|+|.|++|+|++|||+|||+++|+|+|+|||+|||||++|+++|+++.
T Consensus 332 ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~ 411 (529)
T KOG1327|consen 332 YDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTA 411 (529)
T ss_pred cCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCC
Confidence 999999999999999765 344 456778999999999999999999999999999999999999999999986
Q ss_pred CceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHHccCCCeEEEEEecCCCCCCcccccCCCCCc-------cccce
Q 012303 246 GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPA-------RAFDN 318 (466)
Q Consensus 246 ~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~LDd~~~~-------R~rDN 318 (466)
++||||||||||+||| |++|++|||.||++|||||||||||+||++|++||++++. |.|||
T Consensus 412 ~qY~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD~ 479 (529)
T KOG1327|consen 412 GQYHVLLIITDGVVTD------------MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAERDN 479 (529)
T ss_pred cceEEEEEEeCCcccc------------HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCcccccccccccccc
Confidence 8999999999999998 9999999999999999999999999999999999998776 78999
Q ss_pred eeeeccccccccccccchhHHHHHHHHHHHhHHHHHHHHHhcccc
Q 012303 319 FQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNILG 363 (466)
Q Consensus 319 vqFV~f~~i~~~~~~~~~~~~~la~~aL~EIP~Q~~~~~~lg~L~ 363 (466)
||||+|+++++++.+.+.++++||+.||||||+||++||+++-|.
T Consensus 480 vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~ 524 (529)
T KOG1327|consen 480 VQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGIL 524 (529)
T ss_pred eEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence 999999999998878888999999999999999999999994444
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=1e-70 Score=541.14 Aligned_cols=223 Identities=54% Similarity=0.894 Sum_probs=203.8
Q ss_pred ccccHHHHHHHHHhcCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCC-CCCHHHHHHHHHhhcccccCCCCccceEe
Q 012303 106 NYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFG 184 (466)
Q Consensus 106 ~ys~ld~v~~al~~~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~-~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fG 184 (466)
.|+||||+ ++|+| +||+||||||+||||+++ ++||||+++ .+|+||+||++||+||+.||+|++||+||
T Consensus 19 ~~tFldy~-----~~G~~-~nl~vaIDfT~SNg~p~~----~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~G 88 (254)
T cd01459 19 QPTFLDYR-----SAGLE-SNLIVAIDFTKSNGWPGE----KRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFG 88 (254)
T ss_pred CCCHHHHH-----hCCCe-eeEEEEEEeCCCCCCCCC----CCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEe
Confidence 89999999 89999 599999999999999865 589999976 58999999999999999999999999999
Q ss_pred eCCCCCCCCccccc---CCCCCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCcc
Q 012303 185 FGDASTHDQEVFSF---YPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQV 259 (466)
Q Consensus 185 FGa~~~~~~~vF~f---~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~--~Y~VLlIITDG~i 259 (466)
||++.+++..++++ ++++|+|.|++||+++|++++++|+|+|||+|+|||++|+++++++.. +|+||||||||+|
T Consensus 89 FGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i 168 (254)
T cd01459 89 FGAIVTKDQSVFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEI 168 (254)
T ss_pred ecccCCCCCccccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCc
Confidence 99998776655544 588999999999999999999999999999999999999999987644 4999999999999
Q ss_pred ccCCCcccCcCchhHHHHHHHHHHccCCCeEEEEEecCCCCCCcccccCC-------CCCccccceeeeecccccccccc
Q 012303 260 TRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDD-------NIPARAFDNFQFVNFTEIMSKNV 332 (466)
Q Consensus 260 ~d~~d~~~~~~s~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~LDd-------~~~~R~rDNvqFV~f~~i~~~~~ 332 (466)
+| +++|++||++||++||||||||||+++|+.|++||+ +.+.|.|||||||+|++++...
T Consensus 169 ~D------------~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~~l~~~~~~~~~rDnvqFV~f~~~~~~~- 235 (254)
T cd01459 169 TD------------MNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIVQFVPFTEFMSNA- 235 (254)
T ss_pred cc------------HHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCccccccccCCcceecceeeecchhhcccc-
Confidence 97 999999999999999999999999999999999998 3567889999999999997431
Q ss_pred ccchhHHHHHHHHHHHhHHHH
Q 012303 333 DRSRKEAEFALAALMEIPSQY 353 (466)
Q Consensus 333 ~~~~~~~~la~~aL~EIP~Q~ 353 (466)
..++++||+++|+|||+||
T Consensus 236 --~~~~~~La~~~L~EiP~Q~ 254 (254)
T cd01459 236 --GNPEAALATAALAEIPSQL 254 (254)
T ss_pred --cccHHHHHHHHHHhccccC
Confidence 1357899999999999996
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=3.4e-48 Score=353.34 Aligned_cols=137 Identities=47% Similarity=0.878 Sum_probs=129.1
Q ss_pred CcccCCCC-CCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCC---cccccC--CCCCccCCHHHHHHHHHHhCCCc
Q 012303 149 SLHHIGDD-QNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQ---EVFSFY--PDEKFCNGFEEVLRRYRELVPHL 222 (466)
Q Consensus 149 SLH~i~~~-~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~---~vF~f~--~~~~~c~G~egvl~~Yr~~l~~v 222 (466)
||||+++. +|+||+||++||++|++||+||+||+|||||+.+.+. ++|+|+ +++++|.|++|||++||+++++|
T Consensus 1 SLH~~~~~~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v 80 (146)
T PF07002_consen 1 SLHYISPNQPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKV 80 (146)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhhe
Confidence 89999984 8999999999999999999999999999999988664 458776 57899999999999999999999
Q ss_pred eecCCCChHHHHHHHHHHHHh---cCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHHccCCCeEEEEEecC
Q 012303 223 RLAGPTSFAPIIEMAITIVEH---SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVG 297 (466)
Q Consensus 223 ~LsGPT~FapII~~a~~~v~~---s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~AS~~PLSIIiVGVG 297 (466)
+|+|||+|+|||++|+++|++ .+.+|+||||||||+|+| +++|++||++||++||||||||||
T Consensus 81 ~l~GPT~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D------------~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 81 QLSGPTNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITD------------MEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred EECCCccHHHHHHHHHHHHhhhccCCceEEEEEEeccccccc------------HHHHHHHHHHHccCCeEEEEEEeC
Confidence 999999999999999999984 567999999999999997 999999999999999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.97 E-value=1.9e-31 Score=253.86 Aligned_cols=197 Identities=22% Similarity=0.334 Sum_probs=166.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
..+.+.||-|+|+. .++ .....|.+++++..+...||+|+.|++|.||.+..+..+| .
T Consensus 2 ArV~LVLD~SGSM~----------~~y----k~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v--------t 59 (200)
T PF10138_consen 2 ARVYLVLDISGSMR----------PLY----KDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV--------T 59 (200)
T ss_pred cEEEEEEeCCCCCc----------hhh----hCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc--------C
Confidence 36889999999994 222 2467899999999999999999999999999987665554 2
Q ss_pred cCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc-CC-ceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHH
Q 012303 205 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-GG-QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 282 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s-~~-~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv 282 (466)
...+++.++.....++.+...|-|+++|||++|++.+.++ +. ....+||||||.++| .+++.++|+
T Consensus 60 ~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~------------~~~~~~~i~ 127 (200)
T PF10138_consen 60 LDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDD------------RRAIEKLIR 127 (200)
T ss_pred HHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccc------------hHHHHHHHH
Confidence 3456666654444444456567799999999999998754 22 367779999999997 899999999
Q ss_pred HccCCCeEEEEEecCCCCCCcccccCCCCCccccceeeeeccccccccccccchhHHHHHHHHHHHhHHHHHHHHHhccc
Q 012303 283 KASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNIL 362 (466)
Q Consensus 283 ~AS~~PLSIIiVGVGd~~f~~M~~LDd~~~~R~rDNvqFV~f~~i~~~~~~~~~~~~~la~~aL~EIP~Q~~~~~~lg~L 362 (466)
+||++||+|+|||||+.+|+.+++||+ +.+|.+||+.|+.+.++. ..+|++|++.+|.|+|.|+++++.+|||
T Consensus 128 ~as~~pifwqFVgiG~~~f~fL~kLD~-l~gR~vDNa~Ff~~~d~~------~lsD~eLy~~LL~Efp~Wl~~ar~~gi~ 200 (200)
T PF10138_consen 128 EASDEPIFWQFVGIGDSNFGFLEKLDD-LAGRVVDNAGFFAIDDID------ELSDEELYDRLLAEFPDWLKAARAKGIL 200 (200)
T ss_pred hccCCCeeEEEEEecCCcchHHHHhhc-cCCcccCCcCeEecCCcc------cCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999 799999999999999984 2478999999999999999999999987
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.80 E-value=2.3e-19 Score=169.19 Aligned_cols=168 Identities=17% Similarity=0.240 Sum_probs=127.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 205 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~c 205 (466)
+++++||.|+||.+. +.+.++| ..+.+++++..++.++..||.|+...+|+||.... .+..
T Consensus 4 dvv~~ID~SgSM~~~----~~~~~~~----k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~----~~~~------- 64 (199)
T cd01457 4 DYTLLIDKSGSMAEA----DEAKERS----RWEEAQESTRALARKCEEYDSDGITVYLFSGDFRR----YDNV------- 64 (199)
T ss_pred CEEEEEECCCcCCCC----CCCCCch----HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccc----cCCc-------
Confidence 689999999999854 1122444 46899999999999999999999777777665421 1111
Q ss_pred CCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc--C----CceEEEEEEeCCccccCCCcccCcCchhHHHHHH
Q 012303 206 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--G----GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 279 (466)
Q Consensus 206 ~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s--~----~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~ 279 (466)
. .+++.+++.+ +...|+|++.+.|+.+++...+. + ..+.+++|||||..++ .+++.+
T Consensus 65 ~-~~~v~~~~~~----~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d------------~~~~~~ 127 (199)
T cd01457 65 N-SSKVDQLFAE----NSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD------------KDAVER 127 (199)
T ss_pred C-HHHHHHHHhc----CCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc------------HHHHHH
Confidence 1 5666666654 34469999999999998543221 1 1278899999999886 678899
Q ss_pred HHHHccCC-----CeEEEEEecCCC--CCCcccccCCCC--Cccccceeeeeccccccc
Q 012303 280 AIVKASEY-----PLSIILVGVGDG--PWDMMREFDDNI--PARAFDNFQFVNFTEIMS 329 (466)
Q Consensus 280 aIv~AS~~-----PLSIIiVGVGd~--~f~~M~~LDd~~--~~R~rDNvqFV~f~~i~~ 329 (466)
+|++|++. +|.|.|||||++ .+..|++||+.+ ..+.||||+||+|.++..
T Consensus 128 ~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~~~~~~~~~d~vd~~~~~~~~~ 186 (199)
T cd01457 128 VIIKASDELDADNELAISFLQIGRDPAATAFLKALDDQLQEVGAKFDIVDTVTWDDMER 186 (199)
T ss_pred HHHHHHHhhccccCceEEEEEeCCcHHHHHHHHHHhHHHHhcCCcccceeeeeHHhhhc
Confidence 99999863 889999999885 789999999853 346789999999999854
No 6
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=9.8e-11 Score=90.30 Aligned_cols=46 Identities=46% Similarity=1.034 Sum_probs=41.7
Q ss_pred CCCCCccCCCCCccc-cccCcccc-cchhcCC-----CCccccccccCccccC
Q 012303 421 HVCPICLTDPKDMAF-GCGHQTCC-GCGQDLD-----LCPICRSFIQTRIKLY 466 (466)
Q Consensus 421 ~~CpICl~~~kd~~~-pCGH~~Cc-~C~~~l~-----~CPiCR~~I~~~i~ly 466 (466)
.+|.||++++.|.++ -|||++.| +|+.+++ .||+||.+|..+||.|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 599999999999999 99999755 9999875 6999999999999876
No 7
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.80 E-value=3.2e-08 Score=88.31 Aligned_cols=150 Identities=19% Similarity=0.305 Sum_probs=109.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~---D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
.++++.||.|.|+. .+....+...+..++..+.. +..|-+++|++... ..+++.
T Consensus 2 ~~v~l~vD~S~SM~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~---~~~~~~-- 58 (177)
T smart00327 2 LDVVFLLDGSGSMG------------------PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDAT---VLFPLN-- 58 (177)
T ss_pred ccEEEEEeCCCccc------------------hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCce---EEEccc--
Confidence 47899999999994 13455555555666655555 88999999998532 222222
Q ss_pred CCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc--C---CceEEEEEEeCCccccCCCcccCcCchhHHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--G---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 276 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s--~---~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~ 276 (466)
...+.+.+.+......+. ..|.|++...|+++++.+++. . +...+++|||||...+. +.
T Consensus 59 --~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~------------~~ 122 (177)
T smart00327 59 --DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG------------GD 122 (177)
T ss_pred --ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC------------cc
Confidence 356777887777766553 578899999999999987521 1 12579999999998861 45
Q ss_pred HHHHHHHccCCCeEEEEEecCCC-CCCcccccCCCCCc
Q 012303 277 TVEAIVKASEYPLSIILVGVGDG-PWDMMREFDDNIPA 313 (466)
Q Consensus 277 Ti~aIv~AS~~PLSIIiVGVGd~-~f~~M~~LDd~~~~ 313 (466)
+.+++..+.+..+.|++||+|+. +.+.|+.|.....+
T Consensus 123 ~~~~~~~~~~~~i~i~~i~~~~~~~~~~l~~~~~~~~~ 160 (177)
T smart00327 123 LLKAAKELKRSGVKVFVVGVGNDVDEEELKKLASAPGG 160 (177)
T ss_pred HHHHHHHHHHCCCEEEEEEccCccCHHHHHHHhCCCcc
Confidence 66777777777899999999998 88999998875443
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.77 E-value=1e-09 Score=82.62 Aligned_cols=43 Identities=42% Similarity=1.093 Sum_probs=36.6
Q ss_pred CCCCCCccCCCCCccc-cccCc-ccccchhcC----CCCccccccccCc
Q 012303 420 NHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 420 ~~~CpICl~~~kd~~~-pCGH~-~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
+..|+||+++..++++ ||||. +|..|+.++ ..||+||++|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4689999999999998 99999 888999987 6899999999753
No 9
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.70 E-value=1.7e-07 Score=84.51 Aligned_cols=147 Identities=18% Similarity=0.269 Sum_probs=102.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
.|+++.+|.|+|+.. ...+.|-..+..++..+..+..|-+++|+........ . ..
T Consensus 3 ~~v~~vlD~S~SM~~------------------~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~---~----~~ 57 (171)
T cd01461 3 KEVVFVIDTSGSMSG------------------TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSP---S----SV 57 (171)
T ss_pred ceEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecC---c----ce
Confidence 489999999999941 2366777778888888888888999999986432111 1 01
Q ss_pred cCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHHc
Q 012303 205 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 284 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~A 284 (466)
..+-+. ++...+.+..+...|-|++...|+.+.+..+...+.--++++||||...+ .+++.+++.++
T Consensus 58 ~~~~~~-~~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~ 124 (171)
T cd01461 58 SATAEN-VAAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN------------ESQILKNVREA 124 (171)
T ss_pred eCCHHH-HHHHHHHHHhcCCCCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC------------HHHHHHHHHHh
Confidence 112221 12223444455668999999999999888765333446889999999764 46677888887
Q ss_pred cCCCeEEEEEecCC-CCCCcccccCC
Q 012303 285 SEYPLSIILVGVGD-GPWDMMREFDD 309 (466)
Q Consensus 285 S~~PLSIIiVGVGd-~~f~~M~~LDd 309 (466)
.+..+.|..||+|. .+...|+.+-+
T Consensus 125 ~~~~i~i~~i~~g~~~~~~~l~~ia~ 150 (171)
T cd01461 125 LSGRIRLFTFGIGSDVNTYLLERLAR 150 (171)
T ss_pred cCCCceEEEEEeCCccCHHHHHHHHH
Confidence 77788999999996 35566666643
No 10
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.8e-09 Score=108.19 Aligned_cols=46 Identities=43% Similarity=1.082 Sum_probs=43.8
Q ss_pred CCCCCccCCCCCccc-cccCcccc-cchhcCCCCccccccccCccccC
Q 012303 421 HVCPICLTDPKDMAF-GCGHQTCC-GCGQDLDLCPICRSFIQTRIKLY 466 (466)
Q Consensus 421 ~~CpICl~~~kd~~~-pCGH~~Cc-~C~~~l~~CPiCR~~I~~~i~ly 466 (466)
..|.||++.+++++| ||||+||| .|...+..||+||+.|...+++|
T Consensus 306 ~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 306 DLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRY 353 (355)
T ss_pred CceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHh
Confidence 589999999999999 99999999 99999999999999999998876
No 11
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.61 E-value=3.9e-07 Score=85.26 Aligned_cols=147 Identities=14% Similarity=0.251 Sum_probs=99.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCC--
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDE-- 202 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~-- 202 (466)
.++++.||.|+|+.. +..+.|-..+..++..+..+..|-++.|++.... ++++..+.
T Consensus 14 ~~vv~llD~SgSM~~------------------~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~---~~~~~~~~~~ 72 (190)
T cd01463 14 KDIVILLDVSGSMTG------------------QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNP---VVPCFNDTLV 72 (190)
T ss_pred ceEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeE---EeeecccceE
Confidence 699999999999951 3456666667777888888889999999987542 22221110
Q ss_pred -CccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHh---c------CCceEEEEEEeCCccccCCCcccCcCch
Q 012303 203 -KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH---S------GGQYHVLVIIADGQVTRSVDTEHGQLSS 272 (466)
Q Consensus 203 -~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~---s------~~~Y~VLlIITDG~i~d~~d~~~~~~s~ 272 (466)
......+.+ .+.+..++..|.|++...|+.|.+..++ . ...-.++++||||..++
T Consensus 73 ~~~~~~~~~~----~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~----------- 137 (190)
T cd01463 73 QATTSNKKVL----KEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN----------- 137 (190)
T ss_pred ecCHHHHHHH----HHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc-----------
Confidence 001123333 3445667788999999999999887765 1 11236789999999765
Q ss_pred hHHHHHHHHHHc--cCCCeEEEEEecCCC--CCCcccccC
Q 012303 273 QEKKTVEAIVKA--SEYPLSIILVGVGDG--PWDMMREFD 308 (466)
Q Consensus 273 ~~~~Ti~aIv~A--S~~PLSIIiVGVGd~--~f~~M~~LD 308 (466)
..+.++++... .+.++-|..||||.+ +.+.|++|=
T Consensus 138 -~~~~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA 176 (190)
T cd01463 138 -YKEIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMA 176 (190)
T ss_pred -HhHHHHHhcccccCCCcEEEEEEecCCccccchHHHHHH
Confidence 34445554422 235899999999975 577777664
No 12
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.7e-09 Score=104.92 Aligned_cols=47 Identities=38% Similarity=1.176 Sum_probs=43.7
Q ss_pred CCCCCCccCCCCCccc-cccCcc-cccchhcCCCCccccccccCccccC
Q 012303 420 NHVCPICLTDPKDMAF-GCGHQT-CCGCGQDLDLCPICRSFIQTRIKLY 466 (466)
Q Consensus 420 ~~~CpICl~~~kd~~~-pCGH~~-Cc~C~~~l~~CPiCR~~I~~~i~ly 466 (466)
..+|.|||+.++|.+| +|||++ |.+|+.++..|||||+.|.++.+||
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhh
Confidence 4599999999999999 999995 5599999999999999999999987
No 13
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.55 E-value=6e-07 Score=83.21 Aligned_cols=169 Identities=14% Similarity=0.172 Sum_probs=106.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD---~D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
+++++.||-|+|++. .|-+.++...+..+++.+. ++-.+-++.|+.... .+++|...
T Consensus 1 ~Dv~~vlD~SgSm~~-----------------~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~---~~~~l~~~ 60 (186)
T cd01471 1 LDLYLLVDGSGSIGY-----------------SNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAK---ELIRLSSP 60 (186)
T ss_pred CcEEEEEeCCCCccc-----------------hhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCce---EEEECCCc
Confidence 368999999999852 1335677777777777764 445899999997542 23444321
Q ss_pred CCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc----CCceEEEEEEeCCccccCCCcccCcCchhHHHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 277 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s----~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~T 277 (466)
. -...+.+++.-+.+......+|-|+++..++.|.+...+. ...-.+++|||||..++ ..++
T Consensus 61 ~--~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~------------~~~~ 126 (186)
T cd01471 61 N--STNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDS------------KFRT 126 (186)
T ss_pred c--ccchHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCC------------Ccch
Confidence 1 1122332222223333344678999999999999887652 12235789999999765 2233
Q ss_pred HHHHHHccCCCeEEEEEecCC-CCCCcccccCCCC-Cccccceeeeeccccc
Q 012303 278 VEAIVKASEYPLSIILVGVGD-GPWDMMREFDDNI-PARAFDNFQFVNFTEI 327 (466)
Q Consensus 278 i~aIv~AS~~PLSIIiVGVGd-~~f~~M~~LDd~~-~~R~rDNvqFV~f~~i 327 (466)
+++..++-+.++-|.+||||+ .+.+.|+.|-+.. ..-..++.-+.+|+++
T Consensus 127 ~~~a~~l~~~gv~v~~igiG~~~d~~~l~~ia~~~~~~~~~~~~~~~~~~~~ 178 (186)
T cd01471 127 LKEARKLRERGVIIAVLGVGQGVNHEENRSLVGCDPDDSPCPLYLQSSWSEV 178 (186)
T ss_pred hHHHHHHHHCCCEEEEEEeehhhCHHHHHHhcCCCCCCCCCCeeecCCHHHH
Confidence 444445556689999999997 4667777776532 1112366666666665
No 14
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.55 E-value=1.2e-06 Score=75.62 Aligned_cols=146 Identities=17% Similarity=0.342 Sum_probs=98.6
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCCC
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDE 202 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~---D~~ip~fGFGa~~~~~~~vF~f~~~~ 202 (466)
++++.||.|+|+. ....+.+...+..++..+.. ...+-+++|+.... .++.+...
T Consensus 2 ~v~~viD~S~Sm~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~---~~~~~~~~- 59 (161)
T cd00198 2 DIVFLLDVSGSMG------------------GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNAR---VVLPLTTD- 59 (161)
T ss_pred cEEEEEeCCCCcC------------------cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccc---eeeccccc-
Confidence 6899999999982 24566666767777666665 77899999997422 12222211
Q ss_pred CccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccCCCcccCcCchhHHHHHHH
Q 012303 203 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEA 280 (466)
Q Consensus 203 ~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s--~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~a 280 (466)
...+.+.+.-.. +.. ...|.|.+...++.+.+...+. .....++++||||..++. .....+.
T Consensus 60 ---~~~~~~~~~~~~-~~~-~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~-----------~~~~~~~ 123 (161)
T cd00198 60 ---TDKADLLEAIDA-LKK-GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDG-----------PELLAEA 123 (161)
T ss_pred ---CCHHHHHHHHHh-ccc-CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCC-----------cchhHHH
Confidence 123333332222 111 4678999999999999998764 456789999999987751 1234455
Q ss_pred HHHccCCCeEEEEEecCC-CCCCcccccCC
Q 012303 281 IVKASEYPLSIILVGVGD-GPWDMMREFDD 309 (466)
Q Consensus 281 Iv~AS~~PLSIIiVGVGd-~~f~~M~~LDd 309 (466)
+..+....+.|.+||+|+ .+-..++.|+.
T Consensus 124 ~~~~~~~~v~v~~v~~g~~~~~~~l~~l~~ 153 (161)
T cd00198 124 ARELRKLGITVYTIGIGDDANEDELKEIAD 153 (161)
T ss_pred HHHHHHcCCEEEEEEcCCCCCHHHHHHHhc
Confidence 555666799999999998 66666666655
No 15
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.4e-08 Score=102.32 Aligned_cols=49 Identities=37% Similarity=0.941 Sum_probs=42.6
Q ss_pred CCCCCCCCccCCCCCccc-cccCcccc-cchhcCC----CCccccccccCccccC
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQTCC-GCGQDLD----LCPICRSFIQTRIKLY 466 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~~Cc-~C~~~l~----~CPiCR~~I~~~i~ly 466 (466)
+...+|+||+...+|.++ ||.|+|-| .|+..++ .||+||++|...+.|+
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 345799999999999997 99999866 9999775 6999999999987764
No 16
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.46 E-value=8.3e-07 Score=81.97 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=95.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD---~D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
+++++.||.|+|+... . ...-.+|+..+...|...+ ++..+-++.|+.... .++++...
T Consensus 4 ~~v~~llD~SgSM~~~--------~-------~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~---~~~~l~~~ 65 (176)
T cd01464 4 LPIYLLLDTSGSMAGE--------P-------IEALNQGLQMLQSELRQDPYALESVEISVITFDSAAR---VIVPLTPL 65 (176)
T ss_pred CCEEEEEECCCCCCCh--------H-------HHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCce---EecCCccH
Confidence 6899999999999521 1 1233455555555554422 345799999998542 23344221
Q ss_pred CCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCc---------eEEEEEEeCCccccCCCcccCcCch
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQ---------YHVLVIIADGQVTRSVDTEHGQLSS 272 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~---------Y~VLlIITDG~i~d~~d~~~~~~s~ 272 (466)
+ ......+...|-|++...+++|.+........ -.++++||||..+|
T Consensus 66 ~-------------~~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~----------- 121 (176)
T cd01464 66 E-------------SFQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTD----------- 121 (176)
T ss_pred H-------------hcCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCc-----------
Confidence 1 11234567789999999999999887543111 24789999999876
Q ss_pred hHHHHHHHHHHccCCCeEEEEEecCC-CCCCcccccCCC
Q 012303 273 QEKKTVEAIVKASEYPLSIILVGVGD-GPWDMMREFDDN 310 (466)
Q Consensus 273 ~~~~Ti~aIv~AS~~PLSIIiVGVGd-~~f~~M~~LDd~ 310 (466)
+.....+++.++-...+-|..||||. .+.+.|+++-++
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ia~~ 160 (176)
T cd01464 122 DLTAAIERIKEARDSKGRIVACAVGPKADLDTLKQITEG 160 (176)
T ss_pred hHHHHHHHHHhhcccCCcEEEEEeccccCHHHHHHHHCC
Confidence 23444577877777789999999995 677777777653
No 17
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.42 E-value=1.7e-06 Score=78.69 Aligned_cols=141 Identities=14% Similarity=0.257 Sum_probs=92.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 205 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~c 205 (466)
++++.||.|+|+.. +..+.|-.++..++..+.++..+-+++|+..... ++++.+.+.
T Consensus 2 ~v~~vlD~S~SM~~------------------~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~---~~~~~~~~~-- 58 (155)
T cd01466 2 DLVAVLDVSGSMAG------------------DKLQLVKHALRFVISSLGDADRLSIVTFSTSAKR---LSPLRRMTA-- 58 (155)
T ss_pred cEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCcceEEEEEecCCccc---cCCCcccCH--
Confidence 68999999999951 2345555555566666666667999999986432 233332111
Q ss_pred CCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHH
Q 012303 206 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 283 (466)
Q Consensus 206 ~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~--~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~ 283 (466)
.+-+.+ ++.+..+...|-|+...-++.+.+..++.. +.-.++++||||..++ . .++..
T Consensus 59 ~~~~~~----~~~i~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~------------~----~~~~~ 118 (155)
T cd01466 59 KGKRSA----KRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNH------------G----AVVLR 118 (155)
T ss_pred HHHHHH----HHHHHhccCCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCc------------c----hhhhc
Confidence 112222 333444667888999999999999876542 2346899999998764 1 22344
Q ss_pred ccCCCeEEEEEecC-CCCCCcccccCC
Q 012303 284 ASEYPLSIILVGVG-DGPWDMMREFDD 309 (466)
Q Consensus 284 AS~~PLSIIiVGVG-d~~f~~M~~LDd 309 (466)
+.+.++-|..||+| +.+.+.|+++=+
T Consensus 119 ~~~~~v~v~~igig~~~~~~~l~~iA~ 145 (155)
T cd01466 119 ADNAPIPIHTFGLGASHDPALLAFIAE 145 (155)
T ss_pred ccCCCceEEEEecCCCCCHHHHHHHHh
Confidence 56679999999999 456666666543
No 18
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.42 E-value=1.8e-06 Score=76.16 Aligned_cols=145 Identities=17% Similarity=0.247 Sum_probs=95.3
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccc---ccCCCCccceEeeCCCCCCCCcccccCCCC
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHDQEVFSFYPDE 202 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~---~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~ 202 (466)
++++.+|.|+|+.. ..++.+...+..++. ..+.+-.+-++.|++... .++.+....
T Consensus 2 di~~llD~S~Sm~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~---~~~~~~~~~ 60 (161)
T cd01450 2 DIVFLLDGSESVGP------------------ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVR---VEFSLNDYK 60 (161)
T ss_pred cEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCce---EEEECCCCC
Confidence 68899999999851 134445554555444 444577999999998643 223443221
Q ss_pred CccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcC----CceEEEEEEeCCccccCCCcccCcCchhHHHHH
Q 012303 203 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG----GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTV 278 (466)
Q Consensus 203 ~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~----~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti 278 (466)
..+.+++.-....... .|-|++...++.+.+...+.. ..-.++++||||..++. .+..
T Consensus 61 ----~~~~~~~~i~~~~~~~--~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~------------~~~~ 122 (161)
T cd01450 61 ----SKDDLLKAVKNLKYLG--GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDG------------GDPK 122 (161)
T ss_pred ----CHHHHHHHHHhcccCC--CCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCC------------cchH
Confidence 3455555444322211 147999999999999887653 45688999999988751 1334
Q ss_pred HHHHHccCCCeEEEEEecCCCCCCcccccCC
Q 012303 279 EAIVKASEYPLSIILVGVGDGPWDMMREFDD 309 (466)
Q Consensus 279 ~aIv~AS~~PLSIIiVGVGd~~f~~M~~LDd 309 (466)
+++.+..+..+-|+.||||..+.+.|++|-+
T Consensus 123 ~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 123 EAAAKLKDEGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred HHHHHHHHCCCEEEEEeccccCHHHHHHHhC
Confidence 4444444558999999999978888877754
No 19
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.33 E-value=4.4e-06 Score=74.21 Aligned_cols=139 Identities=19% Similarity=0.282 Sum_probs=95.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 205 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~c 205 (466)
+++|.||-|+|+.+.+ ...+..++|...+..++..+..+ .|-+++|++... .++.+ .
T Consensus 1 dvv~v~D~SgSM~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~~---~~~~~------t 57 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYD-------------GNRTRIDQAKDALNELLANLPGD-RVGLVSFSDSSR---TLSPL------T 57 (172)
T ss_dssp EEEEEEE-SGGGGTTT-------------SSS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSCE---EEEEE------E
T ss_pred CEEEEEECCcccCCCC-------------CCCcHHHHHHHHHHHHHHHCCCC-EEEEEEeccccc---ccccc------c
Confidence 5899999999996431 12578899999999999988755 999999998531 12233 3
Q ss_pred CCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHHcc
Q 012303 206 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKAS 285 (466)
Q Consensus 206 ~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~AS 285 (466)
.+.+.+.++-++..+.....|.|.+...|+.|.++.......=-++|+||||.-+. ...+++..+.
T Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~--------------~~~~~~~~~~ 123 (172)
T PF13519_consen 58 SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS--------------SDIEAAKALK 123 (172)
T ss_dssp SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------HHHHHHHHHH
T ss_pred ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------chhHHHHHHH
Confidence 46677777766666666668899999999999999887653445678999997553 2223555667
Q ss_pred CCCeEEEEEecCCCCC
Q 012303 286 EYPLSIILVGVGDGPW 301 (466)
Q Consensus 286 ~~PLSIIiVGVGd~~f 301 (466)
+..+.|.+||+|...=
T Consensus 124 ~~~i~i~~v~~~~~~~ 139 (172)
T PF13519_consen 124 QQGITIYTVGIGSDSD 139 (172)
T ss_dssp CTTEEEEEEEES-TT-
T ss_pred HcCCeEEEEEECCCcc
Confidence 8889999999998654
No 20
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.32 E-value=1.1e-05 Score=74.22 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=93.7
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC-CCccceEeeCCCCCCC--CcccccCCCC
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE-DNLIPCFGFGDASTHD--QEVFSFYPDE 202 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~-D~~ip~fGFGa~~~~~--~~vF~f~~~~ 202 (466)
.+.+.||.|+|+.. .+..+.|-..+..++...+. +-.+-+|+|+...+.. ..++...+-+
T Consensus 2 ~v~~llD~SgSM~~-----------------~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~ 64 (174)
T cd01454 2 AVTLLLDLSGSMRS-----------------DRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFD 64 (174)
T ss_pred EEEEEEECCCCCCC-----------------CcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcc
Confidence 57899999999952 13444444444444444443 5579999998763111 1122110101
Q ss_pred CccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHH
Q 012303 203 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 282 (466)
Q Consensus 203 ~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv 282 (466)
. . +..+-++.+..+...|-|.+...|+.+.+...+....--++++||||..++. ++..+++. ..++.++++.
T Consensus 65 ~---~---~~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~-~~~~~~~~-~~~~~~~~~~ 136 (174)
T cd01454 65 E---S---LHERARKRLAALSPGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDL-DYYEGNVF-ATEDALRAVI 136 (174)
T ss_pred c---c---cchhHHHHHHccCCCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcc-cccCcchh-HHHHHHHHHH
Confidence 0 1 0112233444566678899999999999988765444568999999998763 22223331 2445566688
Q ss_pred HccCCCeEEEEEecCCCC
Q 012303 283 KASEYPLSIILVGVGDGP 300 (466)
Q Consensus 283 ~AS~~PLSIIiVGVGd~~ 300 (466)
+|-+..+.+..||||+..
T Consensus 137 ~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 137 EARKLGIEVFGITIDRDA 154 (174)
T ss_pred HHHhCCcEEEEEEecCcc
Confidence 888889999999999865
No 21
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.29 E-value=1.6e-05 Score=71.70 Aligned_cols=146 Identities=16% Similarity=0.231 Sum_probs=96.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
+|+++.+|.|+|+.. ...+.|...+..++..+..+..+-++.|++... .++.+.+.
T Consensus 1 ~~~~~vlD~S~SM~~------------------~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~---~~~~~~~~--- 56 (170)
T cd01465 1 LNLVFVIDRSGSMDG------------------PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAE---TVLPATPV--- 56 (170)
T ss_pred CcEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCcc---EEecCccc---
Confidence 489999999999941 126777777778888888888999999998632 22232221
Q ss_pred cCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHH
Q 012303 205 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 282 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~--~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv 282 (466)
...+.++ +.+.+++..|.|++...++.+.+.+++.. ..--.+++||||..++.. .+.++..+++.
T Consensus 57 -~~~~~l~----~~l~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~--------~~~~~~~~~~~ 123 (170)
T cd01465 57 -RDKAAIL----AAIDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGE--------TDPDELARLVA 123 (170)
T ss_pred -chHHHHH----HHHHcCCCCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCC--------CCHHHHHHHHH
Confidence 1223333 33334556789999999999999886542 222567899999876411 12355566666
Q ss_pred HccCCCeEEEEEecCCC-CCCccccc
Q 012303 283 KASEYPLSIILVGVGDG-PWDMMREF 307 (466)
Q Consensus 283 ~AS~~PLSIIiVGVGd~-~f~~M~~L 307 (466)
++.+..+-|..||||+. +...|+++
T Consensus 124 ~~~~~~v~i~~i~~g~~~~~~~l~~i 149 (170)
T cd01465 124 QKRESGITLSTLGFGDNYNEDLMEAI 149 (170)
T ss_pred HhhcCCeEEEEEEeCCCcCHHHHHHH
Confidence 66667888999999942 33444444
No 22
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.23 E-value=3.9e-07 Score=87.15 Aligned_cols=45 Identities=31% Similarity=0.762 Sum_probs=38.7
Q ss_pred CCCCCCCCCccCCCCCccc-cccCcccccchhcC--------------------CCCccccccccC
Q 012303 417 TSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL--------------------DLCPICRSFIQT 461 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l--------------------~~CPiCR~~I~~ 461 (466)
..+..+|+||++..+++++ +|||.+|..|+..+ ..||+||.+|+.
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4456799999999999998 99999999999642 269999999976
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.1e-07 Score=96.28 Aligned_cols=42 Identities=43% Similarity=0.837 Sum_probs=37.2
Q ss_pred CCCCCCccCCCCCccc-cccCcccccchhc---------CCCCccccccccC
Q 012303 420 NHVCPICLTDPKDMAF-GCGHQTCCGCGQD---------LDLCPICRSFIQT 461 (466)
Q Consensus 420 ~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~---------l~~CPiCR~~I~~ 461 (466)
...|||||+.+.-+++ .|||.|||.|+-. .+.||+||..|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 4689999999999998 9999999999863 2489999999886
No 24
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=4e-07 Score=85.74 Aligned_cols=42 Identities=38% Similarity=0.911 Sum_probs=34.9
Q ss_pred CCCCCccCCCCCcc-c--cccCcccccchhcC----CCCccccccccCc
Q 012303 421 HVCPICLTDPKDMA-F--GCGHQTCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 421 ~~CpICl~~~kd~~-~--pCGH~~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
-.|||||+....-+ + .|||.||..|+... ..||+||..|+.+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 58999999765554 3 99999999999865 3899999988764
No 25
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.14 E-value=1.3e-05 Score=76.06 Aligned_cols=152 Identities=17% Similarity=0.241 Sum_probs=92.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCC--Cc-ccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHD--QE-VFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~--~~-vF~f~~~ 201 (466)
.++++.||.|+|+.... ....+..+.|...+..++..+.++..|-+|.|+...... .. +++..+-
T Consensus 21 ~~vv~vlD~SgSM~~~~------------~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~ 88 (206)
T cd01456 21 PNVAIVLDNSGSMREVD------------GGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCL 88 (206)
T ss_pred CcEEEEEeCCCCCcCCC------------CCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCcccccccccccc
Confidence 58999999999996310 012356677777777777778778899999999864321 11 1111110
Q ss_pred CCccCCHH-HHHHHHHHhCCCce-ecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHH
Q 012303 202 EKFCNGFE-EVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 279 (466)
Q Consensus 202 ~~~c~G~e-gvl~~Yr~~l~~v~-LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~ 279 (466)
-....+.. .-.+...+.+..++ ..|-|+....|+.+.+..+ .+.-..+|+||||..++.. +..+...
T Consensus 89 ~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~~---------~~~~~~~ 157 (206)
T cd01456 89 TAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCGP---------DPCEVAR 157 (206)
T ss_pred ccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCCC---------CHHHHHH
Confidence 00111210 01122334555565 7789999999999988875 2333678999999876411 1223334
Q ss_pred HHHHc--cCCCeEEEEEecCCC
Q 012303 280 AIVKA--SEYPLSIILVGVGDG 299 (466)
Q Consensus 280 aIv~A--S~~PLSIIiVGVGd~ 299 (466)
.+.+. ..-++.|.+||||..
T Consensus 158 ~~~~~~~~~~~i~i~~igiG~~ 179 (206)
T cd01456 158 ELAKRRTPAPPIKVNVIDFGGD 179 (206)
T ss_pred HHHHhcCCCCCceEEEEEecCc
Confidence 44432 124788999999975
No 26
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=6.3e-07 Score=87.45 Aligned_cols=49 Identities=33% Similarity=0.702 Sum_probs=40.5
Q ss_pred CCCCCCCCccCCCCCccc-cccCcccccchhcC-------CCCccccccccC--ccccC
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-------DLCPICRSFIQT--RIKLY 466 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-------~~CPiCR~~I~~--~i~ly 466 (466)
...-+|-|||+..+|+++ .|||+||.-|+.++ +.||+|+..|+. ++.||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 344699999999999999 99999999999865 369999998765 44444
No 27
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.11 E-value=3e-05 Score=72.96 Aligned_cols=153 Identities=18% Similarity=0.262 Sum_probs=90.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccc---ccCCCCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~---~yD~D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
+|+++.||-|+|++. +.++++...+..++. .+..+-.+-++.|+.... .+|++...
T Consensus 1 ~di~~vlD~SgSM~~------------------~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~---~~~~~~~~ 59 (198)
T cd01470 1 LNIYIALDASDSIGE------------------EDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPK---EIVSIRDF 59 (198)
T ss_pred CcEEEEEECCCCccH------------------HHHHHHHHHHHHHHHHccccCCCceEEEEEecCCce---EEEecccC
Confidence 479999999999851 234555555555444 444456799999988643 23444321
Q ss_pred CCccCCHHHHHHHHHHhCCCce-ecCCCChHHHHHHHHHHHHhc----C----CceEEEEEEeCCccccCCCcccCcCch
Q 012303 202 EKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEHS----G----GQYHVLVIIADGQVTRSVDTEHGQLSS 272 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~-LsGPT~FapII~~a~~~v~~s----~----~~Y~VLlIITDG~i~d~~d~~~~~~s~ 272 (466)
. -...+.++++-+..-.... ..|-|++...|+++.+..... . ..-.++++||||+-++. . +|
T Consensus 60 ~--~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g------~-~~ 130 (198)
T cd01470 60 N--SNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMG------G-SP 130 (198)
T ss_pred C--CCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCC------C-Ch
Confidence 1 1223444443333222221 246699999999887764211 1 12378999999987641 1 22
Q ss_pred hHHHHHHHHHHc----------cCCCeEEEEEecCCC-CCCcccccCC
Q 012303 273 QEKKTVEAIVKA----------SEYPLSIILVGVGDG-PWDMMREFDD 309 (466)
Q Consensus 273 ~~~~Ti~aIv~A----------S~~PLSIIiVGVGd~-~f~~M~~LDd 309 (466)
.+..+.|.++ .+..+.|..||||+. +.+.|+++=.
T Consensus 131 --~~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~ 176 (198)
T cd01470 131 --LPTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLAS 176 (198)
T ss_pred --hHHHHHHHHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhc
Confidence 3334444433 334689999999974 6777777644
No 28
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.10 E-value=2.8e-05 Score=71.01 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=93.3
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCCC
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDE 202 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD---~D~~ip~fGFGa~~~~~~~vF~f~~~~ 202 (466)
++++.+|-|.|.+. ..++++...+-.++..|+ ++..|-++.|+.... .+|.|+.
T Consensus 2 Dv~~vlD~S~Sm~~------------------~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~---~~~~l~~-- 58 (164)
T cd01482 2 DIVFLVDGSWSIGR------------------SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPR---TEFDLNA-- 58 (164)
T ss_pred CEEEEEeCCCCcCh------------------hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCee---EEEecCC--
Confidence 68999999999851 235555555555555554 567899999998642 2344431
Q ss_pred CccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccCCCcccCcCchhHHHH
Q 012303 203 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 277 (466)
Q Consensus 203 ~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s-----~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~T 277 (466)
....+.++++-.++. ...|.|+....|+.+.+...+. ...-.++||||||.-++ +.++.
T Consensus 59 --~~~~~~l~~~l~~~~---~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~-----------~~~~~ 122 (164)
T cd01482 59 --YTSKEDVLAAIKNLP---YKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD-----------DVELP 122 (164)
T ss_pred --CCCHHHHHHHHHhCc---CCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc-----------hHHHH
Confidence 234566666544432 1478899999999887654221 22457899999998654 23344
Q ss_pred HHHHHHccCCCeEEEEEecCCCCCCcccccCC
Q 012303 278 VEAIVKASEYPLSIILVGVGDGPWDMMREFDD 309 (466)
Q Consensus 278 i~aIv~AS~~PLSIIiVGVGd~~f~~M~~LDd 309 (466)
.+.+. +..+-|..||+|+.+...|+++-+
T Consensus 123 a~~lk---~~gi~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01482 123 ARVLR---NLGVNVFAVGVKDADESELKMIAS 151 (164)
T ss_pred HHHHH---HCCCEEEEEecCcCCHHHHHHHhC
Confidence 44444 458899999999987666666654
No 29
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.09 E-value=1e-06 Score=86.95 Aligned_cols=47 Identities=32% Similarity=0.731 Sum_probs=37.1
Q ss_pred CCCCCCCCccCCCCC--------ccc-cccCcccccchhcC----CCCccccccccCccc
Q 012303 418 SDNHVCPICLTDPKD--------MAF-GCGHQTCCGCGQDL----DLCPICRSFIQTRIK 464 (466)
Q Consensus 418 ~e~~~CpICl~~~kd--------~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~~i~ 464 (466)
.++.+|+||++...+ +++ +|||.||.+|+... ..||+||.++...++
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 345799999997543 245 89999999999754 379999999987654
No 30
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=98.09 E-value=7.8e-05 Score=70.79 Aligned_cols=170 Identities=16% Similarity=0.243 Sum_probs=108.2
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHH-HHHHHHhhcccccCCC---CccceEeeCCCCCCCCcccccCCC
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYE-QAISIIGKTLSSFDED---NLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye-~AI~~Ig~vL~~yD~D---~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
.+++.||-|.|.+ ...++ .++..+-.++..|+-. -.+-+.=|++... ..++|+.+
T Consensus 2 Di~fllD~S~Si~------------------~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~---~~~~~~~~ 60 (192)
T cd01473 2 DLTLILDESASIG------------------YSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNR---DVVPFSDE 60 (192)
T ss_pred cEEEEEeCCCccc------------------HHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCce---eEEecCcc
Confidence 5789999998875 12344 3555666667777644 4788888887542 23455432
Q ss_pred CCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCC----ceEEEEEEeCCccccCCCcccCcCchhHHHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG----QYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 277 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~----~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~T 277 (466)
. -..-++++++=+++.+.....|-|+....|+.|.+......+ .--|+|+||||.-++. ++...
T Consensus 61 ~--~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~----------~~~~~ 128 (192)
T cd01473 61 E--RYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSA----------SKKEL 128 (192)
T ss_pred c--ccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCc----------chhhH
Confidence 2 123455666555444334446889999999999887654221 2679999999998751 13445
Q ss_pred HHHHHHccCCCeEEEEEecCCCCCCcccccCCCC-Cccccceeeeecccccc
Q 012303 278 VEAIVKASEYPLSIILVGVGDGPWDMMREFDDNI-PARAFDNFQFVNFTEIM 328 (466)
Q Consensus 278 i~aIv~AS~~PLSIIiVGVGd~~f~~M~~LDd~~-~~R~rDNvqFV~f~~i~ 328 (466)
.++...+-+.-+-|..||||..+-..++.+=+.- ......+|=..+|+++.
T Consensus 129 ~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~~~~~~~~~~~~~~~~f~~l~ 180 (192)
T cd01473 129 QDISLLYKEENVKLLVVGVGAASENKLKLLAGCDINNDNCPNVIKTEWNNLN 180 (192)
T ss_pred HHHHHHHHHCCCEEEEEEeccccHHHHHHhcCCCCCCCCCCeEEecchhhHH
Confidence 5666677788999999999998766666554421 11112344445666653
No 31
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.04 E-value=3.1e-05 Score=85.27 Aligned_cols=145 Identities=23% Similarity=0.252 Sum_probs=95.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
.++++.||.|+|+. | +..++|-..+...|....++-.|-++.|+...... +... .
T Consensus 272 ~~vvfvlD~SgSM~--g----------------~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~---~~~~----~ 326 (596)
T TIGR03788 272 RELVFVIDTSGSMA--G----------------ESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLL---FPVP----V 326 (596)
T ss_pred ceEEEEEECCCCCC--C----------------ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEe---cccc----c
Confidence 48999999999995 1 23567777777788888888899999999875322 1110 0
Q ss_pred cCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc-CCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHH
Q 012303 205 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 283 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s-~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~ 283 (466)
..+ ++-+++..+.+..++..|-|++.+.|+.|.+..... .+.--.+++||||.+.+ +.+.++++..
T Consensus 327 ~~~-~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~ 393 (596)
T TIGR03788 327 PAT-AHNLARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGN------------EDALFQLIRT 393 (596)
T ss_pred cCC-HHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCC------------HHHHHHHHHH
Confidence 011 122233344455667789999999999998763222 22334578999999875 5677777765
Q ss_pred ccCCCeEEEEEecCCC-CCCcccccC
Q 012303 284 ASEYPLSIILVGVGDG-PWDMMREFD 308 (466)
Q Consensus 284 AS~~PLSIIiVGVGd~-~f~~M~~LD 308 (466)
+. -..-|..||||+. +...|+.+-
T Consensus 394 ~~-~~~ri~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 394 KL-GDSRLFTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred hc-CCceEEEEEeCCCcCHHHHHHHH
Confidence 43 2456778999985 555565553
No 32
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.04 E-value=4.4e-05 Score=69.37 Aligned_cols=141 Identities=16% Similarity=0.278 Sum_probs=89.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCCC
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDE 202 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD---~D~~ip~fGFGa~~~~~~~vF~f~~~~ 202 (466)
++++.||-|+|... ..++.+...+..++..|+ .+-.+-++.|+.... .++++..
T Consensus 2 Dvv~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~---~~~~~~~-- 58 (164)
T cd01472 2 DIVFLVDGSESIGL------------------SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPR---TEFYLNT-- 58 (164)
T ss_pred CEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCcee---EEEecCC--
Confidence 78999999999851 234444455555555554 344899999997643 2334432
Q ss_pred CccCCHHHHHHHHHHhCCCcee-cCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccCCCcccCcCchhHHH
Q 012303 203 KFCNGFEEVLRRYRELVPHLRL-AGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 276 (466)
Q Consensus 203 ~~c~G~egvl~~Yr~~l~~v~L-sGPT~FapII~~a~~~v~~s-----~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~ 276 (466)
....+.+.++ +..++. .|.|+....++.|.+..... ...-.++++||||.-++ +..+
T Consensus 59 --~~~~~~~~~~----l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~-----------~~~~ 121 (164)
T cd01472 59 --YRSKDDVLEA----VKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQD-----------DVEE 121 (164)
T ss_pred --CCCHHHHHHH----HHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc-----------hHHH
Confidence 1233444333 333443 78899999999999887642 23346789999997553 1222
Q ss_pred HHHHHHHccCCCeEEEEEecCCCCCCcccccCC
Q 012303 277 TVEAIVKASEYPLSIILVGVGDGPWDMMREFDD 309 (466)
Q Consensus 277 Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~LDd 309 (466)
....+. +..+.|..||+|+.+.+.|+.+=+
T Consensus 122 ~~~~l~---~~gv~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01472 122 PAVELK---QAGIEVFAVGVKNADEEELKQIAS 151 (164)
T ss_pred HHHHHH---HCCCEEEEEECCcCCHHHHHHHHC
Confidence 233333 467899999999987777776644
No 33
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=98.03 E-value=9.9e-05 Score=66.64 Aligned_cols=135 Identities=21% Similarity=0.321 Sum_probs=88.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~---D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
+++++.+|-|.|... .++++...+..++..+.. .-.+-+.+|+.... ..-.|.+...
T Consensus 1 ldv~~llD~S~Sm~~-------------------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~-~~~~~~l~~~ 60 (163)
T cd01476 1 LDLLFVLDSSGSVRG-------------------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGR-QRVRFNLPKH 60 (163)
T ss_pred CCEEEEEeCCcchhh-------------------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCc-eEEEecCCCC
Confidence 478999999998841 255666666666777664 67899999988532 1123444321
Q ss_pred CCccCCHHHHHHHHHHhCCCce-ecCCCChHHHHHHHHHHHHhc----CCceEEEEEEeCCccccCCCcccCcCchhHHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 276 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~-LsGPT~FapII~~a~~~v~~s----~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~ 276 (466)
+..+.++++-. .++ ..|.|+....|+.+.+...+. .+...+++++|||..++ +..+
T Consensus 61 ----~~~~~l~~~i~----~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~-----------~~~~ 121 (163)
T cd01476 61 ----NDGEELLEKVD----NLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHD-----------DPEK 121 (163)
T ss_pred ----CCHHHHHHHHH----hCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCC-----------chHH
Confidence 12344444333 233 467899999999999887521 12347899999998764 1334
Q ss_pred HHHHHHHccCCCeEEEEEecCCCC
Q 012303 277 TVEAIVKASEYPLSIILVGVGDGP 300 (466)
Q Consensus 277 Ti~aIv~AS~~PLSIIiVGVGd~~ 300 (466)
..+.+.+ ..-+.|+.||+|+..
T Consensus 122 ~~~~l~~--~~~v~v~~vg~g~~~ 143 (163)
T cd01476 122 QARILRA--VPNIETFAVGTGDPG 143 (163)
T ss_pred HHHHHhh--cCCCEEEEEECCCcc
Confidence 4555655 466889999999863
No 34
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.6e-06 Score=86.96 Aligned_cols=43 Identities=30% Similarity=0.765 Sum_probs=37.3
Q ss_pred CCCCCCCccCCCCCccc-cccCcccccchhcCC----CCccccccccC
Q 012303 419 DNHVCPICLTDPKDMAF-GCGHQTCCGCGQDLD----LCPICRSFIQT 461 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l~----~CPiCR~~I~~ 461 (466)
....|.+||++..++.- ||||.||..|+.... .||.||.+++.
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 34699999999999876 999999999998653 69999998875
No 35
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.90 E-value=1.8e-06 Score=63.41 Aligned_cols=33 Identities=48% Similarity=0.978 Sum_probs=26.9
Q ss_pred CCCccCCCCCccc-cccCcccccchhcCC--------CCccc
Q 012303 423 CPICLTDPKDMAF-GCGHQTCCGCGQDLD--------LCPIC 455 (466)
Q Consensus 423 CpICl~~~kd~~~-pCGH~~Cc~C~~~l~--------~CPiC 455 (466)
|+||++..++++. +|||.||..|+.++. .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999997 999999999998542 58887
No 36
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.90 E-value=0.00013 Score=66.73 Aligned_cols=140 Identities=19% Similarity=0.299 Sum_probs=84.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
.+++|.||.|.|+... .+. ..+..+.|...+...+...+ +..+-++.|++.... ++.+..+.
T Consensus 3 ~~vv~vlD~S~SM~~~---~~~---------~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~~---~~~~~~~~-- 64 (180)
T cd01467 3 RDIMIALDVSGSMLAQ---DFV---------KPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAFT---QAPLTLDR-- 64 (180)
T ss_pred ceEEEEEECCcccccc---cCC---------CCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCeee---ccCCCccH--
Confidence 5799999999999642 110 13445556666666666554 458999999875421 22222111
Q ss_pred cCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHHc
Q 012303 205 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 284 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~A 284 (466)
.-++.+++... .....|.|+...-|+.+.+...+....-.++++||||.-++ |...+ .+..+ .+
T Consensus 65 -~~~~~~l~~l~----~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~------g~~~~--~~~~~---~~ 128 (180)
T cd01467 65 -ESLKELLEDIK----IGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNA------GEIDP--ATAAE---LA 128 (180)
T ss_pred -HHHHHHHHHhh----hcccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC------CCCCH--HHHHH---HH
Confidence 11233333322 23357889998889988888765544457899999997653 22222 22222 23
Q ss_pred cCCCeEEEEEecCC
Q 012303 285 SEYPLSIILVGVGD 298 (466)
Q Consensus 285 S~~PLSIIiVGVGd 298 (466)
.+..+-|..||||+
T Consensus 129 ~~~gi~i~~i~ig~ 142 (180)
T cd01467 129 KNKGVRIYTIGVGK 142 (180)
T ss_pred HHCCCEEEEEEecC
Confidence 35577888888887
No 37
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.88 E-value=7.6e-05 Score=67.09 Aligned_cols=142 Identities=18% Similarity=0.303 Sum_probs=88.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 205 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~c 205 (466)
++++.||.+.|+... ...-..|++. +|+...+...|-++.||......... +- ...-
T Consensus 2 ~vvilvD~S~Sm~g~----------------~~~~k~al~~---~l~~L~~~d~fnii~f~~~~~~~~~~--~~--~~~~ 58 (155)
T PF13768_consen 2 DVVILVDTSGSMSGE----------------KELVKDALRA---ILRSLPPGDRFNIIAFGSSVRPLFPG--LV--PATE 58 (155)
T ss_pred eEEEEEeCCCCCCCc----------------HHHHHHHHHH---HHHhCCCCCEEEEEEeCCEeeEcchh--HH--HHhH
Confidence 689999999999521 1233445555 44455556699999999854321110 00 0001
Q ss_pred CCHHHHHHHHHHhCCCcee-cCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHHc
Q 012303 206 NGFEEVLRRYRELVPHLRL-AGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 284 (466)
Q Consensus 206 ~G~egvl~~Yr~~l~~v~L-sGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~A 284 (466)
.+.+.+++ -+..+.. .|.|+..+.++.|++... ..+.-..+++||||..++ ..+++.+.+..+
T Consensus 59 ~~~~~a~~----~I~~~~~~~G~t~l~~aL~~a~~~~~-~~~~~~~IilltDG~~~~-----------~~~~i~~~v~~~ 122 (155)
T PF13768_consen 59 ENRQEALQ----WIKSLEANSGGTDLLAALRAALALLQ-RPGCVRAIILLTDGQPVS-----------GEEEILDLVRRA 122 (155)
T ss_pred HHHHHHHH----HHHHhcccCCCccHHHHHHHHHHhcc-cCCCccEEEEEEeccCCC-----------CHHHHHHHHHhc
Confidence 23333333 3334566 899999999999987642 223456679999999743 256777777654
Q ss_pred cCCCeEEEEEecCC-CCCCccccc
Q 012303 285 SEYPLSIILVGVGD-GPWDMMREF 307 (466)
Q Consensus 285 S~~PLSIIiVGVGd-~~f~~M~~L 307 (466)
. -.+-|..+|+|. .+...|++|
T Consensus 123 ~-~~~~i~~~~~g~~~~~~~L~~L 145 (155)
T PF13768_consen 123 R-GHIRIFTFGIGSDADADFLREL 145 (155)
T ss_pred C-CCceEEEEEECChhHHHHHHHH
Confidence 4 557888899997 455666655
No 38
>PHA02926 zinc finger-like protein; Provisional
Probab=97.88 E-value=3.4e-06 Score=82.22 Aligned_cols=46 Identities=28% Similarity=0.567 Sum_probs=35.4
Q ss_pred CCCCCCCCccCCC------C---Cccc-cccCcccccchhcCC----------CCccccccccCcc
Q 012303 418 SDNHVCPICLTDP------K---DMAF-GCGHQTCCGCGQDLD----------LCPICRSFIQTRI 463 (466)
Q Consensus 418 ~e~~~CpICl~~~------k---d~~~-pCGH~~Cc~C~~~l~----------~CPiCR~~I~~~i 463 (466)
.++.+|+||++.. . -.++ +|+|.||-.|+..+. .||+||+.+...+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 3457999999863 1 2456 999999999998553 3999999887643
No 39
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.84 E-value=0.00035 Score=62.53 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=78.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 205 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~c 205 (466)
.+++.||.|+|+... ..-.-..++..++..+.. .+..+-++.|+... ....+. .-
T Consensus 2 ~v~illD~SgSM~~~---------------k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~----~~~~~~----~~ 56 (152)
T cd01462 2 PVILLVDQSGSMYGA---------------PEEVAKAVALALLRIALA--ENRDTYLILFDSEF----QTKIVD----KT 56 (152)
T ss_pred CEEEEEECCCCCCCC---------------HHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCc----eEEecC----Cc
Confidence 578999999999521 011223444445554444 24478999998871 111111 12
Q ss_pred CCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCc-cccCCCcccCcCchhHHHHHHHHHHc
Q 012303 206 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQ-VTRSVDTEHGQLSSQEKKTVEAIVKA 284 (466)
Q Consensus 206 ~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~-i~d~~d~~~~~~s~~~~~Ti~aIv~A 284 (466)
..+..+++. +..+...|.|++++.++.+.+..++....=.+++|||||. -.+ ..+..++...+
T Consensus 57 ~~~~~~~~~----l~~~~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~------------~~~~~~~~~~~ 120 (152)
T cd01462 57 DDLEEPVEF----LSGVQLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV------------SDELLREVELK 120 (152)
T ss_pred ccHHHHHHH----HhcCCCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC------------CHHHHHHHHHH
Confidence 345555443 3345567999999999999998876533336889999995 222 12332222333
Q ss_pred cCCCeEEEEEecCCC
Q 012303 285 SEYPLSIILVGVGDG 299 (466)
Q Consensus 285 S~~PLSIIiVGVGd~ 299 (466)
....+=|..||||+.
T Consensus 121 ~~~~~~v~~~~~g~~ 135 (152)
T cd01462 121 RSRVARFVALALGDH 135 (152)
T ss_pred HhcCcEEEEEEecCC
Confidence 344566677777763
No 40
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.82 E-value=0.00015 Score=67.91 Aligned_cols=146 Identities=16% Similarity=0.227 Sum_probs=93.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---------CCCccceEeeCCCCCCCCcc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---------EDNLIPCFGFGDASTHDQEV 195 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD---------~D~~ip~fGFGa~~~~~~~v 195 (466)
.++++.||-|.|.+. ..++.+...+-.++..+. .+-.+-++.|+.... .+
T Consensus 3 ~dvv~vlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~---~~ 61 (186)
T cd01480 3 VDITFVLDSSESVGL------------------QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQE---VE 61 (186)
T ss_pred eeEEEEEeCCCccch------------------hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCce---ee
Confidence 589999999999851 234555554555555552 235789999997643 23
Q ss_pred cccCCCCCccCCHHHHHHHHHHhCCCce-ecCCCChHHHHHHHHHHHHh--cCCceEEEEEEeCCccccCCCcccCcCch
Q 012303 196 FSFYPDEKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEH--SGGQYHVLVIIADGQVTRSVDTEHGQLSS 272 (466)
Q Consensus 196 F~f~~~~~~c~G~egvl~~Yr~~l~~v~-LsGPT~FapII~~a~~~v~~--s~~~Y~VLlIITDG~i~d~~d~~~~~~s~ 272 (466)
|.+..+ -...+.+. +.+..++ ..|.|+....|+.|.+.... ..+.-.++++||||..++..
T Consensus 62 ~~l~~~---~~~~~~l~----~~i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~--------- 125 (186)
T cd01480 62 AGFLRD---IRNYTSLK----EAVDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSP--------- 125 (186)
T ss_pred Eecccc---cCCHHHHH----HHHHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCc---------
Confidence 455321 12334443 3344454 47899999999999988765 22334788999999864311
Q ss_pred hHHHHHHHHHHccCCCeEEEEEecCCCCCCcccccC
Q 012303 273 QEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 308 (466)
Q Consensus 273 ~~~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~LD 308 (466)
.....+++.++.+..+.|..||||..+-..|+++=
T Consensus 126 -~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA 160 (186)
T cd01480 126 -DGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIA 160 (186)
T ss_pred -chhHHHHHHHHHHCCCEEEEEecCccchHHHHHHH
Confidence 12233445556677999999999986555555543
No 41
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.80 E-value=8.1e-06 Score=86.02 Aligned_cols=49 Identities=24% Similarity=0.463 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCCCccCCCCCccc-cccCcccccchhcC----CCCccccccccC
Q 012303 413 PASSTSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 413 ~~~~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
....+++...|+||++...++++ +|||.||..|+... ..||+||..+..
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 34556777899999999999998 99999999999853 379999998764
No 42
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.78 E-value=6.5e-05 Score=67.53 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=73.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccc---ccCCCCccceEeeCCCCCCCCcccccCCCC
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHDQEVFSFYPDE 202 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~---~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~ 202 (466)
++++.||-|.|++. +.++++...|-.++. ..+..-.+-+.-||.... .+|+|+..
T Consensus 1 DivflvD~S~sm~~------------------~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~---~~~~~~~~- 58 (178)
T PF00092_consen 1 DIVFLVDTSGSMSG------------------DNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSAR---VLFSLTDY- 58 (178)
T ss_dssp EEEEEEE-STTSCH------------------HHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEE---EEEETTSH-
T ss_pred CEEEEEeCCCCCch------------------HHHHHHHHHHHHHHHhhhccccccccceeeeecccc---cccccccc-
Confidence 57999999999852 345555555555555 556666899999998654 34555322
Q ss_pred CccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCcccc
Q 012303 203 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTR 261 (466)
Q Consensus 203 ~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s-----~~~Y~VLlIITDG~i~d 261 (466)
...+.+++.= ........|.|+++..|+.|.+..... .....++++||||..++
T Consensus 59 ---~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~ 117 (178)
T PF00092_consen 59 ---QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSND 117 (178)
T ss_dssp ---SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSS
T ss_pred ---cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccC
Confidence 2344444432 234445679999999999999986543 45689999999999987
No 43
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.76 E-value=3.5e-06 Score=60.30 Aligned_cols=33 Identities=42% Similarity=1.137 Sum_probs=27.0
Q ss_pred CCCccCCCCCcc-c-cccCcccccchhcC----CCCccc
Q 012303 423 CPICLTDPKDMA-F-GCGHQTCCGCGQDL----DLCPIC 455 (466)
Q Consensus 423 CpICl~~~kd~~-~-pCGH~~Cc~C~~~l----~~CPiC 455 (466)
|+||++...+++ + +|||.+|.+|+.+. ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999999994 4 99999999999854 479987
No 44
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.70 E-value=0.00021 Score=66.66 Aligned_cols=146 Identities=15% Similarity=0.203 Sum_probs=87.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC-CCCccceEeeCCCCCCCCcccccCCCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD-EDNLIPCFGFGDASTHDQEVFSFYPDEK 203 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD-~D~~ip~fGFGa~~~~~~~vF~f~~~~~ 203 (466)
+++++.||-|+|.+.. +.+++..+-+++..|+ .+..+-++.|+... ..+|+|.....
T Consensus 5 ~Dvv~llD~SgSm~~~-------------------~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~---~~~~~l~~~~~ 62 (185)
T cd01474 5 FDLYFVLDKSGSVAAN-------------------WIEIYDFVEQLVDRFNSPGLRFSFITFSTRA---TKILPLTDDSS 62 (185)
T ss_pred eeEEEEEeCcCchhhh-------------------HHHHHHHHHHHHHHcCCCCcEEEEEEecCCc---eEEEeccccHH
Confidence 5899999999998520 1122223333333443 34689999998753 23466643221
Q ss_pred ccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHh--cCCce--EEEEEEeCCccccCCCcccCcCchhHHHHHH
Q 012303 204 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH--SGGQY--HVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 279 (466)
Q Consensus 204 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~--s~~~Y--~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~ 279 (466)
.+.++-. .++.+...|.|+...-|+.|.+.+.. .++.. .++++||||..++.. ...+.+
T Consensus 63 ------~~~~~l~-~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~----------~~~~~~ 125 (185)
T cd01474 63 ------AIIKGLE-VLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNG----------HKYPEH 125 (185)
T ss_pred ------HHHHHHH-HHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCC----------CcchHH
Confidence 2222211 23445557899999999999887632 22222 788999999975310 112233
Q ss_pred HHHHccCCCeEEEEEecCCCCCCcccccCC
Q 012303 280 AIVKASEYPLSIILVGVGDGPWDMMREFDD 309 (466)
Q Consensus 280 aIv~AS~~PLSIIiVGVGd~~f~~M~~LDd 309 (466)
+...+-+.-+-|..||||+.+.+.|+.+=+
T Consensus 126 ~a~~l~~~gv~i~~vgv~~~~~~~L~~iA~ 155 (185)
T cd01474 126 EAKLSRKLGAIVYCVGVTDFLKSQLINIAD 155 (185)
T ss_pred HHHHHHHcCCEEEEEeechhhHHHHHHHhC
Confidence 333344467789999998877777776644
No 45
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.69 E-value=0.00045 Score=75.81 Aligned_cols=141 Identities=14% Similarity=0.209 Sum_probs=95.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCC---ccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDN---LIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~---~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
++++|.||-|+|.+. .|-.++|+..+..++..|+... .+-+..|++... .+|.|...
T Consensus 43 lDIvFLLD~SgSMg~-----------------~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r---~vfpL~s~ 102 (576)
T PTZ00441 43 VDLYLLVDGSGSIGY-----------------HNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTT---ELIRLGSG 102 (576)
T ss_pred ceEEEEEeCCCccCC-----------------ccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCce---EEEecCCC
Confidence 689999999999952 2445778888888888885422 333467776532 34555332
Q ss_pred CCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCccccCCCcccCcCchhHHHHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTV 278 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~---~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti 278 (466)
. -...+.++.+-+++...+...|-|++...+..|.+...+.+ ..--++|+||||.-++ ..+++
T Consensus 103 ~--s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns------------~~dvl 168 (576)
T PTZ00441 103 A--SKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNS------------KYRAL 168 (576)
T ss_pred c--cccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCC------------cccHH
Confidence 1 12345666666666666667899999999999988776432 2236899999999654 23445
Q ss_pred HHHHHccCCCeEEEEEecCCC
Q 012303 279 EAIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 279 ~aIv~AS~~PLSIIiVGVGd~ 299 (466)
+++....+.-+-|..||||.+
T Consensus 169 eaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 169 EESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred HHHHHHHHCCCEEEEEEeCCC
Confidence 555555567889999999974
No 46
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.68 E-value=1.3e-05 Score=58.97 Aligned_cols=36 Identities=39% Similarity=0.957 Sum_probs=29.9
Q ss_pred CCCCccCCC---CCccc-cccCcccccchhcCC----CCccccc
Q 012303 422 VCPICLTDP---KDMAF-GCGHQTCCGCGQDLD----LCPICRS 457 (466)
Q Consensus 422 ~CpICl~~~---kd~~~-pCGH~~Cc~C~~~l~----~CPiCR~ 457 (466)
.|+||++.. ..+.+ +|||.+|..|+..+. .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 599999887 22334 999999999999886 8999985
No 47
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.1e-05 Score=80.30 Aligned_cols=43 Identities=30% Similarity=0.795 Sum_probs=36.6
Q ss_pred CCCCCCCccCCCCCccc-cccCcccccchhc-C-----CCCccccccccC
Q 012303 419 DNHVCPICLTDPKDMAF-GCGHQTCCGCGQD-L-----DLCPICRSFIQT 461 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~-l-----~~CPiCR~~I~~ 461 (466)
.+..|+||++.+-+++. +|||.||+.|+.. + ..||.||+.+.-
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 34699999999999997 9999999999976 3 269999997653
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=1.1e-05 Score=89.53 Aligned_cols=43 Identities=33% Similarity=0.676 Sum_probs=38.3
Q ss_pred CCCCCCCccCCCCCccc-cccCcccccchhc-----CCCCccccccccC
Q 012303 419 DNHVCPICLTDPKDMAF-GCGHQTCCGCGQD-----LDLCPICRSFIQT 461 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~-----l~~CPiCR~~I~~ 461 (466)
.-..|++|.+++||+++ .|||.||..|... .++||.|...+..
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 34799999999999999 9999999999984 4699999998865
No 49
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.60 E-value=0.00047 Score=66.43 Aligned_cols=141 Identities=18% Similarity=0.271 Sum_probs=92.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCC---CccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDED---NLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D---~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
+++++.||-|+|.+ ...++++...+..++..|+.. -.+-++.|+.... .+|+|+..
T Consensus 3 ~DlvfllD~S~Sm~------------------~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~---~~~~l~~~ 61 (224)
T cd01475 3 TDLVFLIDSSRSVR------------------PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVK---QEFPLGRF 61 (224)
T ss_pred ccEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCcee---EEeccccc
Confidence 47999999999874 245788888888888888643 4899999998753 34666432
Q ss_pred CCccCCHHHHHHHHHHhCCCce-ecCCCChHHHHHHHHHHHH-h-cC---Cc---eEEEEEEeCCccccCCCcccCcCch
Q 012303 202 EKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVE-H-SG---GQ---YHVLVIIADGQVTRSVDTEHGQLSS 272 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~-LsGPT~FapII~~a~~~v~-~-s~---~~---Y~VLlIITDG~i~d~~d~~~~~~s~ 272 (466)
...+++.++-. .++ +.|.|.-.-.|+.|.+.+- + .+ +. -.|+|+||||.-.|
T Consensus 62 ----~~~~~l~~~i~----~i~~~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~----------- 122 (224)
T cd01475 62 ----KSKADLKRAVR----RMEYLETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD----------- 122 (224)
T ss_pred ----CCHHHHHHHHH----hCcCCCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc-----------
Confidence 12344544433 232 3566777777777776531 1 11 11 47899999998764
Q ss_pred hHHHHHHHHHHccCCCeEEEEEecCCCCCCcccccC
Q 012303 273 QEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 308 (466)
Q Consensus 273 ~~~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~LD 308 (466)
+..+..+.+. ..-+.|..||||+.+.+.|+++=
T Consensus 123 ~~~~~a~~lk---~~gv~i~~VgvG~~~~~~L~~ia 155 (224)
T cd01475 123 DVSEVAAKAR---ALGIEMFAVGVGRADEEELREIA 155 (224)
T ss_pred cHHHHHHHHH---HCCcEEEEEeCCcCCHHHHHHHh
Confidence 2334444443 45688999999987765555553
No 50
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.57 E-value=2.6e-05 Score=60.40 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=36.2
Q ss_pred CCCCCccCCCCCccc-cccCcccccchhcC----CCCccccccccC
Q 012303 421 HVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 421 ~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
..|+||.+..++++. +|||.+|.+|+... ..||+|+.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 479999999999998 99999999999864 379999998854
No 51
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.56 E-value=0.00093 Score=63.84 Aligned_cols=139 Identities=11% Similarity=0.141 Sum_probs=96.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---------CCccceEeeCCCCCCCCcc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---------DNLIPCFGFGDASTHDQEV 195 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~---------D~~ip~fGFGa~~~~~~~v 195 (466)
+.++++||-|.|.+ .+.++++..-|..++..++. .-.+-+.-|++... ..
T Consensus 20 ~DivfvlD~S~Sm~------------------~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~---~~ 78 (193)
T cd01477 20 LDIVFVVDNSKGMT------------------QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNAT---VV 78 (193)
T ss_pred eeEEEEEeCCCCcc------------------hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceE---EE
Confidence 56999999999985 24588888888887777775 24788888887532 23
Q ss_pred cccCCCCCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccCCCcccCcC
Q 012303 196 FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQL 270 (466)
Q Consensus 196 F~f~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s-----~~~Y~VLlIITDG~i~d~~d~~~~~~ 270 (466)
|+|+ .....++++++.+..++.+...|-|+...-|++|.+..... .+.--|+++||||.-...
T Consensus 79 ~~L~----d~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~-------- 146 (193)
T cd01477 79 ADLN----DLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG-------- 146 (193)
T ss_pred Eecc----cccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC--------
Confidence 5553 13466788887776666666667899999999998887642 123578999999854321
Q ss_pred chhHHHHHHHHHHccCCCeEEEEEecCCC
Q 012303 271 SSQEKKTVEAIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 271 s~~~~~Ti~aIv~AS~~PLSIIiVGVGd~ 299 (466)
.....++..++.+..+-|.-||||.+
T Consensus 147 ---~~~~~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 147 ---SNDPRPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred ---CCCHHHHHHHHHHCCCEEEEEEeCCC
Confidence 01122333344567999999999984
No 52
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.56 E-value=0.0014 Score=60.88 Aligned_cols=145 Identities=16% Similarity=0.244 Sum_probs=90.0
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccc-ccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012303 127 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS-SFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 205 (466)
Q Consensus 127 livaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~-~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~c 205 (466)
+++.||.|+|+.. .+..+.|...+..++. .+..+..+-++.|.+...+ .++.+ .
T Consensus 3 v~lvlD~SgSM~~-----------------~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~--~~~~~------t 57 (178)
T cd01451 3 VIFVVDASGSMAA-----------------RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAE--VLLPP------T 57 (178)
T ss_pred EEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCce--EEeCC------C
Confidence 5789999999951 1356677766666664 3445668999999764211 12222 1
Q ss_pred CCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHH-hc--CCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHH
Q 012303 206 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVE-HS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 282 (466)
Q Consensus 206 ~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~-~s--~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv 282 (466)
.+.+.+. +.+..+...|-|++..-++.+.+.++ +. .+.-.++++||||..+...| +......+++.
T Consensus 58 ~~~~~~~----~~l~~l~~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~-------~~~~~~~~~~~ 126 (178)
T cd01451 58 RSVELAK----RRLARLPTGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPD-------PTADRALAAAR 126 (178)
T ss_pred CCHHHHH----HHHHhCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCC-------chhHHHHHHHH
Confidence 2344443 34445667899999999999998872 21 12237889999998763111 11112244555
Q ss_pred HccCCCeEEEEEecCCCCC--Cccccc
Q 012303 283 KASEYPLSIILVGVGDGPW--DMMREF 307 (466)
Q Consensus 283 ~AS~~PLSIIiVGVGd~~f--~~M~~L 307 (466)
++....+.|+.||+|..+. +.|++|
T Consensus 127 ~l~~~gi~v~~I~~~~~~~~~~~l~~i 153 (178)
T cd01451 127 KLRARGISALVIDTEGRPVRRGLAKDL 153 (178)
T ss_pred HHHhcCCcEEEEeCCCCccCccHHHHH
Confidence 5567788889999987543 335544
No 53
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.53 E-value=0.001 Score=62.78 Aligned_cols=139 Identities=14% Similarity=0.200 Sum_probs=88.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~---D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
-+++|+||-|.|+... +-.+|-.+.|-..+...+..+.+ ...+-++.|++...+. +.++..|
T Consensus 4 r~ivi~lD~S~SM~a~-------------D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~--~~PlT~D 68 (183)
T cd01453 4 RHLIIVIDCSRSMEEQ-------------DLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEK--LTDLTGN 68 (183)
T ss_pred eEEEEEEECcHHHhcC-------------CCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEE--EECCCCC
Confidence 4799999999998532 11479999999999999988743 3578889996543321 2233222
Q ss_pred CCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCccccCCCcccCcCchhHHHHHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 279 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~--~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~ 279 (466)
.+.++..-+.. +...|-|++...|+.|.+..++... +=.|+||++||.-.+ ..+..+
T Consensus 69 ------~~~~~~~L~~~---~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~------------~~~~~~ 127 (183)
T cd01453 69 ------PRKHIQALKTA---RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCD------------PGNIYE 127 (183)
T ss_pred ------HHHHHHHhhcc---cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCC------------hhhHHH
Confidence 12233322222 2446779999999999988865322 224788899987554 111223
Q ss_pred HHHHccCCCeEEEEEecCCC
Q 012303 280 AIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 280 aIv~AS~~PLSIIiVGVGd~ 299 (466)
++..+.+..+-|-+||||.+
T Consensus 128 ~~~~l~~~~I~v~~IgiG~~ 147 (183)
T cd01453 128 TIDKLKKENIRVSVIGLSAE 147 (183)
T ss_pred HHHHHHHcCcEEEEEEechH
Confidence 34444555788888999853
No 54
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.52 E-value=1.6e-05 Score=58.14 Aligned_cols=35 Identities=37% Similarity=0.979 Sum_probs=27.5
Q ss_pred CCCCccCCCC--Cccc--cccCcccccchhcC----CCCcccc
Q 012303 422 VCPICLTDPK--DMAF--GCGHQTCCGCGQDL----DLCPICR 456 (466)
Q Consensus 422 ~CpICl~~~k--d~~~--pCGH~~Cc~C~~~l----~~CPiCR 456 (466)
+|+||++... +.++ +|||.|+.+|+..+ ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 7999999763 3332 99999999999864 4899998
No 55
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.48 E-value=0.0012 Score=61.33 Aligned_cols=135 Identities=19% Similarity=0.286 Sum_probs=92.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~---D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
+.+++.||-|.|.+ +..++++...+..++..++. +-.+-+..|+.... ..|+|..
T Consensus 1 ~Di~fvlD~S~S~~------------------~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~---~~~~l~~- 58 (177)
T cd01469 1 MDIVFVLDGSGSIY------------------PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFR---TEFTLNE- 58 (177)
T ss_pred CcEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCcee---EEEecCc-
Confidence 36899999998863 35688888888888888886 35888999988642 2355532
Q ss_pred CCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHH--HhcC---CceEEEEEEeCCccccCCCcccCcCchhHHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIV--EHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 276 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v--~~s~---~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~ 276 (466)
-...+.++++=+. ++ .+.|.|+....|+.|.+.+ ...+ +.-.|+|+||||.-++.. .
T Consensus 59 ---~~~~~~~~~~i~~-~~--~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~------------~ 120 (177)
T cd01469 59 ---YRTKEEPLSLVKH-IS--QLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDP------------L 120 (177)
T ss_pred ---cCCHHHHHHHHHh-Cc--cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcc------------c
Confidence 1234455544332 22 2577899999999998875 2221 245789999999988622 1
Q ss_pred HHHHHHHccCCCeEEEEEecCCC
Q 012303 277 TVEAIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 277 Ti~aIv~AS~~PLSIIiVGVGd~ 299 (466)
+.+++..|-..-+-|.-||||+.
T Consensus 121 ~~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 121 LKDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred cHHHHHHHHHCCcEEEEEEeccc
Confidence 23344455567889999999984
No 56
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.46 E-value=5.3e-05 Score=53.43 Aligned_cols=38 Identities=39% Similarity=1.013 Sum_probs=30.6
Q ss_pred CCCCccCCCCCccc--cccCcccccchhcC-----CCCccccccc
Q 012303 422 VCPICLTDPKDMAF--GCGHQTCCGCGQDL-----DLCPICRSFI 459 (466)
Q Consensus 422 ~CpICl~~~kd~~~--pCGH~~Cc~C~~~l-----~~CPiCR~~I 459 (466)
+|+||++...+.+. +|||.+|..|.... ..||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999999866554 69999999999743 4799999864
No 57
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=4.8e-05 Score=73.86 Aligned_cols=44 Identities=30% Similarity=0.734 Sum_probs=40.2
Q ss_pred CCCccCCCCCccc-cccCcccc-cchhcCCCCccccccccCccccC
Q 012303 423 CPICLTDPKDMAF-GCGHQTCC-GCGQDLDLCPICRSFIQTRIKLY 466 (466)
Q Consensus 423 CpICl~~~kd~~~-pCGH~~Cc-~C~~~l~~CPiCR~~I~~~i~ly 466 (466)
|..|.++....++ ||.|+++| .|...+..||+|+.+.+..+.+|
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred ceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 9999999999887 99999877 99988889999999999988765
No 58
>PRK13685 hypothetical protein; Provisional
Probab=97.43 E-value=0.0021 Score=65.86 Aligned_cols=143 Identities=17% Similarity=0.179 Sum_probs=93.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
.+++++||-|+|+..+ +..+|..+.|-..+..++....++..+-++.|++...- +.++.
T Consensus 89 ~~vvlvlD~S~SM~~~-------------D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~---~~p~t----- 147 (326)
T PRK13685 89 AVVMLVIDVSQSMRAT-------------DVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATV---LVSPT----- 147 (326)
T ss_pred ceEEEEEECCccccCC-------------CCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceee---cCCCC-----
Confidence 4699999999999632 11368899999999999999877778999999986431 12222
Q ss_pred cCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHh--------cCCceEEEEEEeCCccccCCCcccCcCchhHHH
Q 012303 205 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH--------SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 276 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~--------s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~ 276 (466)
...+.+ +..+..+...|-|+...-|..|.+.+++ ++..--++|+||||.-+...+ ..+...
T Consensus 148 -~d~~~l----~~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~------~~~~~~ 216 (326)
T PRK13685 148 -TNREAT----KNAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTN------PDNPRG 216 (326)
T ss_pred -CCHHHH----HHHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCC------CCCccc
Confidence 222222 2334455566778888888888887653 111234678999998653110 000111
Q ss_pred HHHHHHHccCCCeEEEEEecCCC
Q 012303 277 TVEAIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 277 Ti~aIv~AS~~PLSIIiVGVGd~ 299 (466)
..++...|.+..+.|-.||||..
T Consensus 217 ~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 217 AYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred HHHHHHHHHHcCCeEEEEEECCC
Confidence 23455556677888888999863
No 59
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.42 E-value=0.0018 Score=65.21 Aligned_cols=138 Identities=18% Similarity=0.336 Sum_probs=91.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
.++++|||-|+|+...+ + .+|..| |+..|.+.|..-.. +.+-+.+||.... -+.+|+. ++
T Consensus 61 ~qIvlaID~S~SM~~~~-------~------~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~---~v~Plt~--d~ 120 (266)
T cd01460 61 YQILIAIDDSKSMSENN-------S------KKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQ---ILHPFDE--QF 120 (266)
T ss_pred ceEEEEEecchhccccc-------c------cccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCce---EeCCCCC--Cc
Confidence 57999999999996321 1 356766 88889998887775 6899999998632 2233322 11
Q ss_pred cCCHHHHHHHHHHhCCCceec-CCCChHHHHHHHHHHHHhcC-----C-ceEEEEEEeCCccccCCCcccCcCchhHHHH
Q 012303 205 CNGFEEVLRRYRELVPHLRLA-GPTSFAPIIEMAITIVEHSG-----G-QYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 277 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~Ls-GPT~FapII~~a~~~v~~s~-----~-~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~T 277 (466)
- . ++.-+++....+. +-|+.+..|+.+++..++.. + .-.++|||+||...+ ++...
T Consensus 121 ~-~-----~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~-----------~e~~~ 183 (266)
T cd01460 121 S-S-----QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEF-----------SEGAQ 183 (266)
T ss_pred h-h-----hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCccc-----------CccHH
Confidence 1 1 1122233322222 44999999999999876441 1 137999999999443 12333
Q ss_pred HHHHHHccCCCeEEEEEecCCC
Q 012303 278 VEAIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 278 i~aIv~AS~~PLSIIiVGVGd~ 299 (466)
..++.+|.+..+.+++|||=+.
T Consensus 184 ~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 184 KVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHHHHcCCeEEEEEEcCC
Confidence 4457788888999999999764
No 60
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.39 E-value=3.5e-05 Score=80.38 Aligned_cols=43 Identities=35% Similarity=0.848 Sum_probs=38.0
Q ss_pred CCCCCccCCCCCccc-cccCcccccchhcCC------CCccccccccCcc
Q 012303 421 HVCPICLTDPKDMAF-GCGHQTCCGCGQDLD------LCPICRSFIQTRI 463 (466)
Q Consensus 421 ~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l~------~CPiCR~~I~~~i 463 (466)
++|.||-++.||..+ ||||..|..|...+. .||.||-.|...-
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 589999999999999 999999999987653 7999999987643
No 61
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.37 E-value=2.9e-05 Score=55.60 Aligned_cols=33 Identities=42% Similarity=1.072 Sum_probs=28.9
Q ss_pred CCCccCCCCCcc-c-cccCcccccchhcC------CCCccc
Q 012303 423 CPICLTDPKDMA-F-GCGHQTCCGCGQDL------DLCPIC 455 (466)
Q Consensus 423 CpICl~~~kd~~-~-pCGH~~Cc~C~~~l------~~CPiC 455 (466)
|+||++...++. + +|||.+|..|..++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 5 99999999999754 369987
No 62
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=97.27 E-value=0.0014 Score=58.61 Aligned_cols=120 Identities=19% Similarity=0.298 Sum_probs=79.2
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCccC
Q 012303 127 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCN 206 (466)
Q Consensus 127 livaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~c~ 206 (466)
++||||-|+|.. .....++++.|..+++.+ ...+-++=|-++......+ .
T Consensus 1 i~vaiDtSGSis------------------~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~-~--------- 50 (126)
T PF09967_consen 1 IVVAIDTSGSIS------------------DEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF-R--------- 50 (126)
T ss_pred CEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE-e---------
Confidence 579999999983 357888999999999999 3448888887765433222 1
Q ss_pred CHHHHHHHHHHhCCCce--ecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHHc
Q 012303 207 GFEEVLRRYRELVPHLR--LAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 284 (466)
Q Consensus 207 G~egvl~~Yr~~l~~v~--LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~A 284 (466)
.. ...+..++ =.|-|+|.|+++.+.+. .....++++||||..... ..+
T Consensus 51 ~~-------~~~~~~~~~~GgGGTdf~pvf~~~~~~----~~~~~~vi~fTDg~~~~~-------------------~~~ 100 (126)
T PF09967_consen 51 SL-------EDELRDIKLKGGGGTDFRPVFEYLEEN----RPRPSVVIYFTDGEGWPP-------------------EEA 100 (126)
T ss_pred cc-------cccccccccCCCCCCcchHHHHHHHhc----CCCCCEEEEEeCCCCCCC-------------------CCC
Confidence 10 11112222 24779999999998653 344678899999988531 112
Q ss_pred cCCCeEEEEEe--cCCCCCCcccc
Q 012303 285 SEYPLSIILVG--VGDGPWDMMRE 306 (466)
Q Consensus 285 S~~PLSIIiVG--VGd~~f~~M~~ 306 (466)
-.+|+=|++.| -...||+..-.
T Consensus 101 P~~~vlWvl~~~~~~~~P~G~vv~ 124 (126)
T PF09967_consen 101 PPYPVLWVLPGNRNPKAPFGRVVR 124 (126)
T ss_pred CCCcEEEEEeCCCCCCCCCEEEEE
Confidence 37899999999 22345554433
No 63
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.23 E-value=0.00013 Score=49.55 Aligned_cols=33 Identities=48% Similarity=1.194 Sum_probs=28.2
Q ss_pred CCCccCCCCCccc-cccCcccccchhcC-----CCCccc
Q 012303 423 CPICLTDPKDMAF-GCGHQTCCGCGQDL-----DLCPIC 455 (466)
Q Consensus 423 CpICl~~~kd~~~-pCGH~~Cc~C~~~l-----~~CPiC 455 (466)
|+||++...++++ +|||.+|..|...+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999999888877 99999999999743 369987
No 64
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.19 E-value=0.0032 Score=60.60 Aligned_cols=156 Identities=14% Similarity=0.151 Sum_probs=89.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 205 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~c 205 (466)
+++++||.|+|+.. |+ . .+...-.-..|...+.+.+..|.+.......||++....-..+ .+ +.|.-
T Consensus 2 ~l~lavDlSgSM~~-----~~--~---~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~~~~l-t~--d~p~t 68 (191)
T cd01455 2 RLKLVVDVSGSMYR-----FN--G---YDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPCVPFV-KT--NHPPK 68 (191)
T ss_pred ceEEEEECcHhHHH-----Hh--c---cCCccccHHHHHHHHHHHHHHHHHhCccceeeecCcccccCcc-cc--ccCcc
Confidence 58999999999952 21 0 1222333445555665656666677778888887654221111 22 33333
Q ss_pred CCHH--HHHHHHHHhCCCceecCCCChHHHHHHHHHHHH-hcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHH
Q 012303 206 NGFE--EVLRRYRELVPHLRLAGPTSFAPIIEMAITIVE-HSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 282 (466)
Q Consensus 206 ~G~e--gvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~-~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv 282 (466)
..-+ +++...-.-. ++-++|+.-= .-|..+++..+ ++..+=-|+++||||.-+. +.++|... |-.
T Consensus 69 ~d~~~~~~l~~~l~~~-q~g~ag~~Ta-dAi~~av~rl~~~~~a~~kvvILLTDG~n~~------~~i~P~~a----Aa~ 136 (191)
T cd01455 69 NNKERLETLKMMHAHS-QFCWSGDHTV-EATEFAIKELAAKEDFDEAIVIVLSDANLER------YGIQPKKL----ADA 136 (191)
T ss_pred cchhHHHHHHHHHHhc-ccCccCccHH-HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCC------CCCChHHH----HHH
Confidence 3332 3333332222 3456776333 88888888877 6654556899999999764 44555221 123
Q ss_pred HccCCCeEEEEEecCCCCCCcccc
Q 012303 283 KASEYPLSIILVGVGDGPWDMMRE 306 (466)
Q Consensus 283 ~AS~~PLSIIiVGVGd~~f~~M~~ 306 (466)
-|.+.-+=|-.||||..+.+.++.
T Consensus 137 lA~~~gV~iytIgiG~~d~~~l~~ 160 (191)
T cd01455 137 LAREPNVNAFVIFIGSLSDEADQL 160 (191)
T ss_pred HHHhCCCEEEEEEecCCCHHHHHH
Confidence 345667777788888754444443
No 65
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.15 E-value=0.0052 Score=56.98 Aligned_cols=141 Identities=16% Similarity=0.270 Sum_probs=91.7
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCCC
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDE 202 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~---D~~ip~fGFGa~~~~~~~vF~f~~~~ 202 (466)
.+++.||-|.|.+ ...++++..-|.+++..|+- .-.+.+.-|+.... ..|.|+.-
T Consensus 2 DivfllD~S~Si~------------------~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~---~~~~l~~~- 59 (165)
T cd01481 2 DIVFLIDGSDNVG------------------SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPR---PEFYLNTH- 59 (165)
T ss_pred CEEEEEeCCCCcC------------------HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCee---EEEecccc-
Confidence 5789999988774 35678888888888888873 45888888987642 24666421
Q ss_pred CccCCHHHHHHHHHHhCCCcee-cC-CCChHHHHHHHHHHHHh--cC-----CceEEEEEEeCCccccCCCcccCcCchh
Q 012303 203 KFCNGFEEVLRRYRELVPHLRL-AG-PTSFAPIIEMAITIVEH--SG-----GQYHVLVIIADGQVTRSVDTEHGQLSSQ 273 (466)
Q Consensus 203 ~~c~G~egvl~~Yr~~l~~v~L-sG-PT~FapII~~a~~~v~~--s~-----~~Y~VLlIITDG~i~d~~d~~~~~~s~~ 273 (466)
...++++++-.+ ++. .| .|+-...|+.+.+.+-. .+ +--.|||+||||.-.| +
T Consensus 60 ---~~~~~l~~~i~~----i~~~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d-----------~ 121 (165)
T cd01481 60 ---STKADVLGAVRR----LRLRGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD-----------D 121 (165)
T ss_pred ---CCHHHHHHHHHh----cccCCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc-----------h
Confidence 145566665443 332 45 47888888888766421 11 2357899999999765 2
Q ss_pred HHHHHHHHHHccCCCeEEEEEecCCCCCCcccccCC
Q 012303 274 EKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDD 309 (466)
Q Consensus 274 ~~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~LDd 309 (466)
..+..+.+.+ .-+-|+.||+|..+.+.|+.+-+
T Consensus 122 ~~~~a~~lr~---~gv~i~~vG~~~~~~~eL~~ias 154 (165)
T cd01481 122 VERPAVALKR---AGIVPFAIGARNADLAELQQIAF 154 (165)
T ss_pred HHHHHHHHHH---CCcEEEEEeCCcCCHHHHHHHhC
Confidence 3444455554 45777778888655555554433
No 66
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.13 E-value=0.0095 Score=57.20 Aligned_cols=155 Identities=12% Similarity=0.216 Sum_probs=98.1
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCC----CCccccc
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTH----DQEVFSF 198 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~---yD~D~~ip~fGFGa~~~~----~~~vF~f 198 (466)
.++++||.|.|+... -+ +..++..+.|+..|..+++. ......+-++.||...+. ..+|+.+
T Consensus 3 ~ivf~iDvS~SM~~~----~~-------~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~ 71 (218)
T cd01458 3 SVVFLVDVSPSMFES----KD-------GEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVL 71 (218)
T ss_pred EEEEEEeCCHHHcCC----CC-------CCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEe
Confidence 479999999999621 00 11368999999999999997 666679999999987543 2344444
Q ss_pred CCCCCccCCHHHHHHHHHHhCCCce--------ecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCccccCCCcccC
Q 012303 199 YPDEKFCNGFEEVLRRYRELVPHLR--------LAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQVTRSVDTEHG 268 (466)
Q Consensus 199 ~~~~~~c~G~egvl~~Yr~~l~~v~--------LsGPT~FapII~~a~~~v~~s~~--~Y~VLlIITDG~i~d~~d~~~~ 268 (466)
.|-+ .... +.++...+.+.... -.+.|.+..+|..|.++..+... .=-.+++||||.-.- +
T Consensus 72 ~~l~--~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~------~ 142 (218)
T cd01458 72 LDLD--TPGA-ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPH------G 142 (218)
T ss_pred ecCC--CCCH-HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCC------C
Confidence 3311 1122 23344444332221 24578999999999988775211 124689999986330 0
Q ss_pred cCchhHHHHHHHHHHccCCCeEEEEEecCCCC
Q 012303 269 QLSSQEKKTVEAIVKASEYPLSIILVGVGDGP 300 (466)
Q Consensus 269 ~~s~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~ 300 (466)
.=....++..+.+.+..+.-+.|.+||||..+
T Consensus 143 ~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 143 GDSIKDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 00011344455666677778999999999754
No 67
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.04 E-value=7.2e-05 Score=76.76 Aligned_cols=48 Identities=23% Similarity=0.491 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCccCCCCCccc-cccCcccccchhcC----CCCccccccccC
Q 012303 414 ASSTSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 414 ~~~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
.-.+.+-..|-||++..+-+++ ||||.||.-|+.+. ..||.|+.+++.
T Consensus 17 lk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 17 LKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred hhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 3445666899999999999998 99999999999864 379999998875
No 68
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.02 E-value=0.0082 Score=66.62 Aligned_cols=166 Identities=13% Similarity=0.218 Sum_probs=105.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcc-cccCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTL-SSFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 203 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL-~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~ 203 (466)
..+++.||.|+|+. .|.-..|-.++-.+| ..|-..-.+-++.|+.... ..++..
T Consensus 402 ~~vvfvvD~SGSM~------------------~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a--~~~lpp----- 456 (584)
T PRK13406 402 TTTIFVVDASGSAA------------------LHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGA--ELLLPP----- 456 (584)
T ss_pred ccEEEEEECCCCCc------------------HhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCce--eEEcCC-----
Confidence 67999999999983 145556666666656 3466666899999965311 111121
Q ss_pred ccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHH
Q 012303 204 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAI 281 (466)
Q Consensus 204 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s--~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aI 281 (466)
-..++.+ ++.+..+.-.|-|.++.-|..|.+.+++. .+.-.++|+||||..+...+...|. .....+...+.
T Consensus 457 -T~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~-~~~~~~~~~~a 530 (584)
T PRK13406 457 -TRSLVRA----KRSLAGLPGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGR-AQAEEDALAAA 530 (584)
T ss_pred -CcCHHHH----HHHHhcCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccc-cchhhHHHHHH
Confidence 2244444 34455677789999999999999887654 2334788999999976422211111 11234445555
Q ss_pred HHccCCCeEEEEEecCCCCCCcccccCCCCCccccceeeeeccccc
Q 012303 282 VKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEI 327 (466)
Q Consensus 282 v~AS~~PLSIIiVGVGd~~f~~M~~LDd~~~~R~rDNvqFV~f~~i 327 (466)
..+...-+.+++|++|..+...|++|=+.+. ..|+.+.+.
T Consensus 531 ~~~~~~gi~~~vId~g~~~~~~~~~LA~~~g------g~y~~l~~~ 570 (584)
T PRK13406 531 RALRAAGLPALVIDTSPRPQPQARALAEAMG------ARYLPLPRA 570 (584)
T ss_pred HHHHhcCCeEEEEecCCCCcHHHHHHHHhcC------CeEEECCCC
Confidence 5666667889999999887667776644332 345665554
No 69
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.00 E-value=0.0001 Score=54.67 Aligned_cols=26 Identities=42% Similarity=0.890 Sum_probs=16.7
Q ss_pred CCCccCCCCC----cc-ccccCcccccchhcC
Q 012303 423 CPICLTDPKD----MA-FGCGHQTCCGCGQDL 449 (466)
Q Consensus 423 CpICl~~~kd----~~-~pCGH~~Cc~C~~~l 449 (466)
||||.+ ..+ ++ ++|||.+|.+|+.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence 899999 666 55 499999999999876
No 70
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00034 Score=72.29 Aligned_cols=46 Identities=33% Similarity=0.916 Sum_probs=39.2
Q ss_pred CCCCCCCCccCCCCCccc-cccCcccccchhc----CCCCccccccccCcc
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQD----LDLCPICRSFIQTRI 463 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~----l~~CPiCR~~I~~~i 463 (466)
.++..||||...+.+++| ||||.-|..|+.. .+.|=.|...+...+
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVI 470 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeehh
Confidence 345699999999999999 9999999999974 357999999887644
No 71
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.87 E-value=0.016 Score=64.30 Aligned_cols=155 Identities=14% Similarity=0.189 Sum_probs=93.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc-cCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS-FDEDNLIPCFGFGDASTHDQEVFSFYPDEK 203 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~-yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~ 203 (466)
..++|.||-|+|+. .+..+.|-..+..++.. |-....+-++.|++.... .++.+
T Consensus 408 ~~v~fvvD~SGSM~------------------~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~--~~lp~----- 462 (589)
T TIGR02031 408 RLLIFVVDASGSAA------------------VARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAE--VLLPP----- 462 (589)
T ss_pred ceEEEEEECCCCCC------------------hHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCce--EECCC-----
Confidence 34889999999994 14566676677776653 433347999999754210 12222
Q ss_pred ccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccCCCcccCcCch---hHH-HH
Q 012303 204 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSS---QEK-KT 277 (466)
Q Consensus 204 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~--~~Y~VLlIITDG~i~d~~d~~~~~~s~---~~~-~T 277 (466)
-.+.+.+ ++.+..+...|.|.++.-|..|.+.+++.. ..-.++|+||||.-+-..+.......+ +.. +.
T Consensus 463 -t~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~ 537 (589)
T TIGR02031 463 -SRSVEQA----KRRLDVLPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEA 537 (589)
T ss_pred -CCCHHHH----HHHHhcCCCCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHH
Confidence 2344444 345777888999999999999999887532 223678999999865322100000011 011 11
Q ss_pred HHHHHHccCCCeEEEEEecCCCCCC--cccccCC
Q 012303 278 VEAIVKASEYPLSIILVGVGDGPWD--MMREFDD 309 (466)
Q Consensus 278 i~aIv~AS~~PLSIIiVGVGd~~f~--~M~~LDd 309 (466)
..+.....+..+.+++||+|.+..+ .|++|=+
T Consensus 538 ~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~ 571 (589)
T TIGR02031 538 LALARKIREAGMPALVIDTAMRFVSTGFAQKLAR 571 (589)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHH
Confidence 2222223355689999999986443 3665543
No 72
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.84 E-value=0.00079 Score=54.12 Aligned_cols=43 Identities=30% Similarity=0.722 Sum_probs=24.6
Q ss_pred CCCCCCCccCCCCCcc-c-cccCcccccchhcC--CCCccccccccC
Q 012303 419 DNHVCPICLTDPKDMA-F-GCGHQTCCGCGQDL--DLCPICRSFIQT 461 (466)
Q Consensus 419 e~~~CpICl~~~kd~~-~-pCGH~~Cc~C~~~l--~~CPiCR~~I~~ 461 (466)
+-..|.+|.+..+.++ + .|.|.||..|+... ..||+|+.|-..
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~ 52 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWI 52 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S-
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHHH
Confidence 3468999999999998 4 99999999999875 579999998753
No 73
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=96.74 E-value=0.017 Score=57.72 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=80.2
Q ss_pred CceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc-cCCCCccceEeeCCCCCCCCcccccCC
Q 012303 122 LESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS-FDEDNLIPCFGFGDASTHDQEVFSFYP 200 (466)
Q Consensus 122 le~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~-yD~D~~ip~fGFGa~~~~~~~vF~f~~ 200 (466)
.. +++++.||.|+|+. +..+.|...+...|.. +..+..+-++.|++.... ++.|.
T Consensus 52 ~p-~~vvlvlD~SgSM~-------------------~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~---~~~~t- 107 (296)
T TIGR03436 52 LP-LTVGLVIDTSGSMR-------------------NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRL---LQDFT- 107 (296)
T ss_pred CC-ceEEEEEECCCCch-------------------HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeE---eecCC-
Confidence 34 68999999999984 1245566666666655 566779999999986432 22232
Q ss_pred CCCccCCHHHHHHHHHHhCC-----------CceecCCCChHHHHHHHH-HHHHhcC----CceEEEEEEeCCccccCCC
Q 012303 201 DEKFCNGFEEVLRRYRELVP-----------HLRLAGPTSFAPIIEMAI-TIVEHSG----GQYHVLVIIADGQVTRSVD 264 (466)
Q Consensus 201 ~~~~c~G~egvl~~Yr~~l~-----------~v~LsGPT~FapII~~a~-~~v~~s~----~~Y~VLlIITDG~i~d~~d 264 (466)
...+.+.++-.+..+ .+...|.|.+..-|..++ +...+.. +. -++|+||||.-+.+.
T Consensus 108 -----~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~r-k~iIllTDG~~~~~~- 180 (296)
T TIGR03436 108 -----SDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGR-KALIVISDGGDNRSR- 180 (296)
T ss_pred -----CCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCC-eEEEEEecCCCcchH-
Confidence 123444444333322 123367788777765554 3333221 22 578999999754310
Q ss_pred cccCcCchhHHHHHHHHHHccCCCeEEEEEecCC
Q 012303 265 TEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 298 (466)
Q Consensus 265 ~~~~~~s~~~~~Ti~aIv~AS~~PLSIIiVGVGd 298 (466)
.+.+++++.+ .+.-+.|..||+|+
T Consensus 181 -------~~~~~~~~~~---~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 181 -------DTLERAIDAA---QRADVAIYSIDARG 204 (296)
T ss_pred -------HHHHHHHHHH---HHcCCEEEEeccCc
Confidence 1233444444 34567788888875
No 74
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=96.73 E-value=0.017 Score=55.36 Aligned_cols=161 Identities=12% Similarity=0.162 Sum_probs=100.7
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCC---CccceEeeCCCCCCCCcccccCCCCC
Q 012303 127 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDED---NLIPCFGFGDASTHDQEVFSFYPDEK 203 (466)
Q Consensus 127 livaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D---~~ip~fGFGa~~~~~~~vF~f~~~~~ 203 (466)
.+|+||.|.|+... +-.+|-++.+...+..++..|-+. ..+-+..|+++.... +.++..
T Consensus 6 ~vi~lD~S~sM~a~-------------D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v--~~plT~--- 67 (187)
T cd01452 6 TMICIDNSEYMRNG-------------DYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEV--LVTLTN--- 67 (187)
T ss_pred EEEEEECCHHHHcC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEE--EECCCC---
Confidence 79999999998532 114799999999998887444433 477888888743211 112221
Q ss_pred ccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCccccCCCcccCcCchhHHHHHHH
Q 012303 204 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEA 280 (466)
Q Consensus 204 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~---~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~a 280 (466)
..+.++. .+..+.+.|.+++...|+.|....+... ..=-|++|++++.-.| +....++
T Consensus 68 ---D~~~~~~----~L~~i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d------------~~~i~~~ 128 (187)
T cd01452 68 ---DQGKILS----KLHDVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEED------------EKDLVKL 128 (187)
T ss_pred ---CHHHHHH----HHHhCCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCC------------HHHHHHH
Confidence 2333333 3335567799999999999987775432 1225667776664443 4555567
Q ss_pred HHHccCCCeEEEEEecCCCC--CCcccccCCCCCccccceeeeecccc
Q 012303 281 IVKASEYPLSIILVGVGDGP--WDMMREFDDNIPARAFDNFQFVNFTE 326 (466)
Q Consensus 281 Iv~AS~~PLSIIiVGVGd~~--f~~M~~LDd~~~~R~rDNvqFV~f~~ 326 (466)
+.++.+.-+.|-+||+|+.. =+.++.|-+.... -||-+||....
T Consensus 129 ~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~--~~~s~~~~~~~ 174 (187)
T cd01452 129 AKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNG--KDGSHLVSVPP 174 (187)
T ss_pred HHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcC--CCCceEEEeCC
Confidence 77777778999999999762 2233333222221 36777776544
No 75
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.73 E-value=0.00033 Score=70.82 Aligned_cols=45 Identities=27% Similarity=0.504 Sum_probs=38.1
Q ss_pred CCCCCCCCCCccCCCCCccc-cccCcccccchhcC----CCCcccccccc
Q 012303 416 STSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQ 460 (466)
Q Consensus 416 ~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~ 460 (466)
.+.....|-||-+..+.+++ +|||.||.-|+.+- ..||+||.+..
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 34555789999999999998 99999999999864 37999998754
No 76
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.67 E-value=0.00048 Score=71.03 Aligned_cols=50 Identities=32% Similarity=0.704 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCCccCCCCCccc-cccCcccccchhcCC------CCccccccccCc
Q 012303 413 PASSTSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDLD------LCPICRSFIQTR 462 (466)
Q Consensus 413 ~~~~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l~------~CPiCR~~I~~~ 462 (466)
.+...++++.|.||-+...-..+ ||+|.+|-.|+.+++ .|++||..-..+
T Consensus 54 addtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 54 ADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 34445677899999998877776 999999999999874 799999875554
No 77
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0016 Score=65.54 Aligned_cols=43 Identities=28% Similarity=0.703 Sum_probs=36.0
Q ss_pred CCCCCCCCccCCCCCccc--cccCcccccchhcC------CCCcccccccc
Q 012303 418 SDNHVCPICLTDPKDMAF--GCGHQTCCGCGQDL------DLCPICRSFIQ 460 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l------~~CPiCR~~I~ 460 (466)
....+|++|-+.+..+.. +|||.+|.-|+..- ..||.|-.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 344699999999999986 79999999999753 27999998776
No 78
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.51 E-value=0.0011 Score=67.91 Aligned_cols=44 Identities=34% Similarity=0.782 Sum_probs=38.1
Q ss_pred CCCCCCCCccCCCCCccccc--cCcccccchh-cCCCCccccccccC
Q 012303 418 SDNHVCPICLTDPKDMAFGC--GHQTCCGCGQ-DLDLCPICRSFIQT 461 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~pC--GH~~Cc~C~~-~l~~CPiCR~~I~~ 461 (466)
.+-.+||||++.-.-+++.| ||+.|-.|.. ....||.||.++..
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCcccccccc
Confidence 45579999999999999977 8999998885 55699999999983
No 79
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.36 E-value=0.058 Score=60.40 Aligned_cols=141 Identities=15% Similarity=0.215 Sum_probs=87.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccc-ccCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS-SFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 203 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~-~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~ 203 (466)
..+++.||.|+|+.- .+..+.|...+..++. .|-....+-+++|++... ..++.+
T Consensus 466 ~~vv~vvD~SgSM~~-----------------~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a--~~~~p~----- 521 (633)
T TIGR02442 466 NLVIFVVDASGSMAA-----------------RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEA--EVLLPP----- 521 (633)
T ss_pred ceEEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCc--eEEcCC-----
Confidence 468899999999951 2456667777666664 465667899999975311 112222
Q ss_pred ccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHh----cCCceEEEEEEeCCccccCCCcccCcCchhHHHHHH
Q 012303 204 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH----SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 279 (466)
Q Consensus 204 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~----s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~ 279 (466)
-.+.+.+. +.+..+...|-|.++.-|..+.+.++. ....=.++|+||||.-+.+ |. + ....++..+
T Consensus 522 -t~~~~~~~----~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~-~~--~--~~~~~~~~~ 591 (633)
T TIGR02442 522 -TSSVELAA----RRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVA-DG--G--EPPTDDART 591 (633)
T ss_pred -CCCHHHHH----HHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCC-CC--C--CChHHHHHH
Confidence 23344332 344556678999999999999988773 2223468899999987642 11 1 111223333
Q ss_pred HHHHccCCCeEEEEEecCCC
Q 012303 280 AIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 280 aIv~AS~~PLSIIiVGVGd~ 299 (466)
+-....+.-+-+++|+.+.+
T Consensus 592 ~a~~l~~~~i~~~vIdt~~~ 611 (633)
T TIGR02442 592 IAAKLAARGILFVVIDTESG 611 (633)
T ss_pred HHHHHHhcCCeEEEEeCCCC
Confidence 33333445677888888764
No 80
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.00026 Score=73.14 Aligned_cols=47 Identities=30% Similarity=0.641 Sum_probs=38.9
Q ss_pred CCCCCCCCCccCCCCCccc--cccCcccccchhcC-----CCCccccccccCcc
Q 012303 417 TSDNHVCPICLTDPKDMAF--GCGHQTCCGCGQDL-----DLCPICRSFIQTRI 463 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l-----~~CPiCR~~I~~~i 463 (466)
...+..|+||++..+.+.. .|+|.||.+|+++- ..||.||+....+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 4556799999999888775 99999999999853 37999999877653
No 81
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.14 E-value=0.001 Score=54.10 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=33.3
Q ss_pred CCCCCCCccCCCCCccc-cccCcccccchhcC-----CCCccccccccCc
Q 012303 419 DNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-----DLCPICRSFIQTR 462 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-----~~CPiCR~~I~~~ 462 (466)
+...||||.+-.+|+++ +|||.+++.|+.+. ..||+|+.+++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 45689999999999998 99999999988753 4799999998764
No 82
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.04 E-value=0.0031 Score=49.23 Aligned_cols=43 Identities=23% Similarity=0.542 Sum_probs=35.0
Q ss_pred CCCCCCCccCCCCCccc-cccCcccccchh--cCCCCccccccccC
Q 012303 419 DNHVCPICLTDPKDMAF-GCGHQTCCGCGQ--DLDLCPICRSFIQT 461 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~--~l~~CPiCR~~I~~ 461 (466)
....|..|....+..++ +|||..|..|-. +-..||+|-.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhhccCCCCCCCcccC
Confidence 44689999988666555 999999999976 45689999999875
No 83
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0021 Score=66.97 Aligned_cols=42 Identities=31% Similarity=0.789 Sum_probs=31.8
Q ss_pred CCCCCCCCccCCC-----------CC--cc-ccccCcccccchhcC----CCCccccccc
Q 012303 418 SDNHVCPICLTDP-----------KD--MA-FGCGHQTCCGCGQDL----DLCPICRSFI 459 (466)
Q Consensus 418 ~e~~~CpICl~~~-----------kd--~~-~pCGH~~Cc~C~~~l----~~CPiCR~~I 459 (466)
.++..|.||++.- +| +. +||||.+=-+|.+.+ ..||+||.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 4557999999862 12 23 599999877998754 5899999994
No 84
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.91 E-value=0.0039 Score=66.33 Aligned_cols=48 Identities=27% Similarity=0.673 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCCCccCCCCC---ccc--cccCcccccchhcCC--CCcccccccc
Q 012303 413 PASSTSDNHVCPICLTDPKD---MAF--GCGHQTCCGCGQDLD--LCPICRSFIQ 460 (466)
Q Consensus 413 ~~~~~~e~~~CpICl~~~kd---~~~--pCGH~~Cc~C~~~l~--~CPiCR~~I~ 460 (466)
++....+-++|||||++--. .++ .|-|.|=|.|..++. .||+||-...
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS 222 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcC
Confidence 33456788899999986543 334 999999999999875 8999996443
No 85
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=95.72 E-value=0.0027 Score=51.78 Aligned_cols=36 Identities=33% Similarity=0.821 Sum_probs=26.3
Q ss_pred CCCCCccCCCCC------------c-cc-cccCcccccchhcC----CCCcccc
Q 012303 421 HVCPICLTDPKD------------M-AF-GCGHQTCCGCGQDL----DLCPICR 456 (466)
Q Consensus 421 ~~CpICl~~~kd------------~-~~-pCGH~~Cc~C~~~l----~~CPiCR 456 (466)
..|.||++...+ . ++ +|||.|-..|+.+. ..||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 359999987622 1 23 89999999999853 4899998
No 86
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.0025 Score=64.94 Aligned_cols=41 Identities=29% Similarity=0.733 Sum_probs=33.4
Q ss_pred CCCCCCccCCCCC----ccccccCcccccchhcCC-----CCcccccccc
Q 012303 420 NHVCPICLTDPKD----MAFGCGHQTCCGCGQDLD-----LCPICRSFIQ 460 (466)
Q Consensus 420 ~~~CpICl~~~kd----~~~pCGH~~Cc~C~~~l~-----~CPiCR~~I~ 460 (466)
..+|.|||++... +++||-|.|=..|..++. .||+||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3699999997643 345999999889998763 7999999875
No 87
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.0043 Score=64.59 Aligned_cols=42 Identities=31% Similarity=0.753 Sum_probs=33.8
Q ss_pred CCCCCccCCCCCc----cccccCcccccchhcC----C-CCccccccccCc
Q 012303 421 HVCPICLTDPKDM----AFGCGHQTCCGCGQDL----D-LCPICRSFIQTR 462 (466)
Q Consensus 421 ~~CpICl~~~kd~----~~pCGH~~Cc~C~~~l----~-~CPiCR~~I~~~ 462 (466)
..|.||+|..+.. +|||+|.|=+.|+..+ + .||+|++.|.+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 4999999976554 3499999999999865 2 499999988764
No 88
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=95.58 E-value=0.094 Score=60.72 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=83.0
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHH-hhcccccCCCCccceEeeCCCCCCCCcccccCCCCCcc
Q 012303 127 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISII-GKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 205 (466)
Q Consensus 127 livaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~I-g~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~c 205 (466)
++++||-|+|+... + ..+.-.+|++.. ..+ +.++..+-++.|+....-. ..|.+-.
T Consensus 307 VVLVLDvSGSM~g~-------d-------RL~~lkqAA~~fL~~~---l~~~DrVGLVtFsssA~vl---~pLt~It--- 363 (863)
T TIGR00868 307 VCLVLDKSGSMTVE-------D-------RLKRMNQAAKLFLLQT---VEKGSWVGMVTFDSAAYIK---NELIQIT--- 363 (863)
T ss_pred EEEEEECCcccccc-------C-------HHHHHHHHHHHHHHHh---CCCCCEEEEEEECCceeEe---eccccCC---
Confidence 78899999999521 1 134445555543 233 3456689999999864322 2222111
Q ss_pred CCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHH
Q 012303 206 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 283 (466)
Q Consensus 206 ~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~--~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~ 283 (466)
. ....++-...++ ....|-|++..-|++|.+..++... .=-.+++||||+-.+ ..+..+.
T Consensus 364 -s-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~------------~~~~l~~--- 425 (863)
T TIGR00868 364 -S-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT------------ISSCFEE--- 425 (863)
T ss_pred -c-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC------------HHHHHHH---
Confidence 1 112222233444 3467889999999999999876431 123678889998553 2233333
Q ss_pred ccCCCeEEEEEecCCCCCCccccc
Q 012303 284 ASEYPLSIILVGVGDGPWDMMREF 307 (466)
Q Consensus 284 AS~~PLSIIiVGVGd~~f~~M~~L 307 (466)
+....+.|-.||+|...=..|+++
T Consensus 426 lk~~gVtI~TIg~G~dad~~L~~I 449 (863)
T TIGR00868 426 VKQSGAIIHTIALGPSAAKELEEL 449 (863)
T ss_pred HHHcCCEEEEEEeCCChHHHHHHH
Confidence 334578888899997543334433
No 89
>PRK10997 yieM hypothetical protein; Provisional
Probab=95.58 E-value=0.22 Score=54.38 Aligned_cols=144 Identities=18% Similarity=0.198 Sum_probs=84.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHH-HHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAI-SIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 203 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI-~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~ 203 (466)
-.+||.||-|+|+. |- .-.|.+|+ -+++.+... .+..+-++.|++..... .+.
T Consensus 324 GpiII~VDtSGSM~--G~--------------ke~~AkalAaAL~~iAl~--q~dr~~li~Fs~~i~~~----~l~---- 377 (487)
T PRK10997 324 GPFIVCVDTSGSMG--GF--------------NEQCAKAFCLALMRIALA--ENRRCYIMLFSTEVVTY----ELT---- 377 (487)
T ss_pred CcEEEEEECCCCCC--CC--------------HHHHHHHHHHHHHHHHHh--cCCCEEEEEecCCceee----ccC----
Confidence 46999999999994 21 12555553 333333322 23346688998864321 121
Q ss_pred ccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHH
Q 012303 204 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 283 (466)
Q Consensus 204 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~ 283 (466)
.-.|+..+++.-.. .+.|.|++++.++.+++.+++..-.=-.+|||+|+..... ++++.+.++.+.+
T Consensus 378 ~~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~--------~eel~~~L~~Lk~ 444 (487)
T PRK10997 378 GPDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRL--------PDELVAKVKELQR 444 (487)
T ss_pred CccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCC--------hHHHHHHHHHHHH
Confidence 23578877775533 2489999999999999888754222257899999965431 1224445555555
Q ss_pred ccCCCeEEEEEecCC-CCCCcccccCC
Q 012303 284 ASEYPLSIILVGVGD-GPWDMMREFDD 309 (466)
Q Consensus 284 AS~~PLSIIiVGVGd-~~f~~M~~LDd 309 (466)
....=+--+.| |+ +.=+.|+.||.
T Consensus 445 ~~~~rf~~l~i--~~~~~p~l~~ifD~ 469 (487)
T PRK10997 445 QHQHRFHAVAM--SAHGKPGIMRIFDH 469 (487)
T ss_pred hcCcEEEEEEe--CCCCCchHHHhcCe
Confidence 44444444444 43 22234666654
No 90
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=95.45 E-value=0.16 Score=49.43 Aligned_cols=120 Identities=19% Similarity=0.212 Sum_probs=72.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHH-HHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAIS-IIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 203 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~-~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~ 203 (466)
..++|.+|.|+|+.. |...+. .+..+...+. .+-+|-|+.........+ .
T Consensus 58 ~~lvvl~DvSGSM~~--------------------~s~~~l~~~~~l~~~~~---~~~~f~F~~~l~~vT~~l--~---- 108 (222)
T PF05762_consen 58 RRLVVLCDVSGSMAG--------------------YSEFMLAFLYALQRQFR---RVRVFVFSTRLTEVTPLL--R---- 108 (222)
T ss_pred ccEEEEEeCCCChHH--------------------HHHHHHHHHHHHHHhCC---CEEEEEEeeehhhhhhhh--c----
Confidence 379999999999952 222222 2222333333 788999998654222211 1
Q ss_pred ccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHH
Q 012303 204 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 283 (466)
Q Consensus 204 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~ 283 (466)
-.+.++.+..-...... ++|-|+++..++++.+......-.-.++|||+||.-++. .+...+.++.|..
T Consensus 109 -~~~~~~~l~~~~~~~~~--~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~--------~~~~~~~l~~l~~ 177 (222)
T PF05762_consen 109 -RRDPEEALARLSALVQS--FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTND--------PEPLAEELRRLRR 177 (222)
T ss_pred -cCCHHHHHHHHHhhccC--CCCccHHHHHHHHHHHHhhcccccCcEEEEEecccccCC--------hHHHHHHHHHHHH
Confidence 12445555554443333 889999999999999887644324578999999943331 2345555555655
Q ss_pred c
Q 012303 284 A 284 (466)
Q Consensus 284 A 284 (466)
.
T Consensus 178 r 178 (222)
T PF05762_consen 178 R 178 (222)
T ss_pred h
Confidence 4
No 91
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.0081 Score=62.62 Aligned_cols=46 Identities=30% Similarity=0.693 Sum_probs=37.7
Q ss_pred CCCCCCCCccCCCCCcc-----c----cccCcccccchhcC-----------CCCccccccccCcc
Q 012303 418 SDNHVCPICLTDPKDMA-----F----GCGHQTCCGCGQDL-----------DLCPICRSFIQTRI 463 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~-----~----pCGH~~Cc~C~~~l-----------~~CPiCR~~I~~~i 463 (466)
..+.+|.||+++-.+.+ | +|-|.+|-.|+.+. +.||+||.+...++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 45679999999887777 4 79999999999754 37999999887654
No 92
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.004 Score=68.27 Aligned_cols=42 Identities=29% Similarity=0.740 Sum_probs=34.0
Q ss_pred CCCCCCCCccCCCCC-----cc-ccccCcccccchhcC----CCCccccccc
Q 012303 418 SDNHVCPICLTDPKD-----MA-FGCGHQTCCGCGQDL----DLCPICRSFI 459 (466)
Q Consensus 418 ~e~~~CpICl~~~kd-----~~-~pCGH~~Cc~C~~~l----~~CPiCR~~I 459 (466)
.....|+||++.... +. ++|||.++-.|...+ ..||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 345699999998777 44 499999999999865 5899999943
No 93
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.0092 Score=63.35 Aligned_cols=45 Identities=24% Similarity=0.594 Sum_probs=38.4
Q ss_pred CCCCCCCCCccCCCCCccc-cccCcccccchhcC----CCCccccccccC
Q 012303 417 TSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
...+.+|.||+...-.++. ||||.+|..|..+. ..||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 3667899999999999887 99999999997764 379999998764
No 94
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.53 E-value=0.026 Score=42.98 Aligned_cols=37 Identities=41% Similarity=0.898 Sum_probs=18.5
Q ss_pred CCCccCCC--CCccc---cccCcccccchhcCC-----CCccccccc
Q 012303 423 CPICLTDP--KDMAF---GCGHQTCCGCGQDLD-----LCPICRSFI 459 (466)
Q Consensus 423 CpICl~~~--kd~~~---pCGH~~Cc~C~~~l~-----~CPiCR~~I 459 (466)
||+|.+.. .+.-| +||+..|..|-.++. .||.||.+-
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888765 33344 889999999977653 799999863
No 95
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.047 Score=55.70 Aligned_cols=42 Identities=24% Similarity=0.496 Sum_probs=36.6
Q ss_pred CCCCccCCCCCccc-cccCcccccchhcC----CCCccccccccCcc
Q 012303 422 VCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQTRI 463 (466)
Q Consensus 422 ~CpICl~~~kd~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~~i 463 (466)
.|-||.....+++. .|||.||-.|+.+. ..|.+|.+.+....
T Consensus 243 ~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred cccccccccccchhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 59999999999998 99999999999754 37999999877643
No 96
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=92.50 E-value=0.083 Score=55.98 Aligned_cols=47 Identities=34% Similarity=0.863 Sum_probs=40.3
Q ss_pred CCCCCCCCCccCCCCCccc--cccCcccccchhcC----CCCccccccccCcc
Q 012303 417 TSDNHVCPICLTDPKDMAF--GCGHQTCCGCGQDL----DLCPICRSFIQTRI 463 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l----~~CPiCR~~I~~~i 463 (466)
.+++..|++|.....+++. .|||.+|..|.... ..||.||+.+....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 5777899999999999997 99999999999865 37999998876643
No 97
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.16 E-value=0.021 Score=64.47 Aligned_cols=44 Identities=25% Similarity=0.455 Sum_probs=35.6
Q ss_pred CCCCCCccCCCCCccc----cccCcccccchhcCC----CCccccccccCcc
Q 012303 420 NHVCPICLTDPKDMAF----GCGHQTCCGCGQDLD----LCPICRSFIQTRI 463 (466)
Q Consensus 420 ~~~CpICl~~~kd~~~----pCGH~~Cc~C~~~l~----~CPiCR~~I~~~i 463 (466)
...|++|+....|-+. +|+|.||..|...++ .||+||.-+.+++
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 3579999987776654 999999999998764 7999999877654
No 98
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.44 E-value=0.049 Score=61.53 Aligned_cols=40 Identities=33% Similarity=0.862 Sum_probs=33.1
Q ss_pred CCCCCccCCCCCccc-cccCcccccchhcCC------CCccccccccC
Q 012303 421 HVCPICLTDPKDMAF-GCGHQTCCGCGQDLD------LCPICRSFIQT 461 (466)
Q Consensus 421 ~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l~------~CPiCR~~I~~ 461 (466)
..|.+|++ ..++++ +|||.+|.+|..... .||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 69999999 555666 999999999988542 69999987754
No 99
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=91.37 E-value=0.047 Score=52.98 Aligned_cols=41 Identities=29% Similarity=0.668 Sum_probs=34.2
Q ss_pred CCCCCccCCCCCccc-cccCcccccchhcC----CCCccccccccC
Q 012303 421 HVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 421 ~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
.+|-||-...+.++. .|||.||..|+.+- ..|-+|-...-.
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 489999999999988 99999999999753 379999765444
No 100
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.27 E-value=0.069 Score=55.49 Aligned_cols=44 Identities=32% Similarity=0.823 Sum_probs=32.2
Q ss_pred CCCCCCCCccCCC--CCccc---cccCcccccchhcCC-----CCccccccccC
Q 012303 418 SDNHVCPICLTDP--KDMAF---GCGHQTCCGCGQDLD-----LCPICRSFIQT 461 (466)
Q Consensus 418 ~e~~~CpICl~~~--kd~~~---pCGH~~Cc~C~~~l~-----~CPiCR~~I~~ 461 (466)
.++..||.|++.- .|--| +||.+.|.-|-..++ .||.||..-+.
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 3444699999853 22234 899999999988664 79999987543
No 101
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=0.083 Score=52.82 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=35.7
Q ss_pred CCCCCCCccCCCCCc----cc-cccCcccccchhcCC----CCccccccccCc
Q 012303 419 DNHVCPICLTDPKDM----AF-GCGHQTCCGCGQDLD----LCPICRSFIQTR 462 (466)
Q Consensus 419 e~~~CpICl~~~kd~----~~-pCGH~~Cc~C~~~l~----~CPiCR~~I~~~ 462 (466)
..-.||||.+...++ ++ +|||++|.+|..++. .||+|-.+...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 345899998866654 35 999999999999885 799999887654
No 102
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=0.073 Score=50.36 Aligned_cols=25 Identities=36% Similarity=0.925 Sum_probs=21.2
Q ss_pred ccccccCcccccchhcCC----CCccccc
Q 012303 433 MAFGCGHQTCCGCGQDLD----LCPICRS 457 (466)
Q Consensus 433 ~~~pCGH~~Cc~C~~~l~----~CPiCR~ 457 (466)
.+++|||.+|..|+..+. .||.||.
T Consensus 27 ~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 27 VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 555999999999998754 7999993
No 103
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=90.82 E-value=0.1 Score=44.35 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=21.3
Q ss_pred cccCcccccchhcC-------CCCccccccccC
Q 012303 436 GCGHQTCCGCGQDL-------DLCPICRSFIQT 461 (466)
Q Consensus 436 pCGH~~Cc~C~~~l-------~~CPiCR~~I~~ 461 (466)
.|+|.|=..|+.+. ..||+||++..-
T Consensus 51 ~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 51 KCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred cCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 89999988998753 279999998653
No 104
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.31 E-value=0.07 Score=57.73 Aligned_cols=44 Identities=25% Similarity=0.648 Sum_probs=32.2
Q ss_pred CCCCCCCCccCC-----------------CCCccc-cccCcccccchhcC----C-CCccccccccC
Q 012303 418 SDNHVCPICLTD-----------------PKDMAF-GCGHQTCCGCGQDL----D-LCPICRSFIQT 461 (466)
Q Consensus 418 ~e~~~CpICl~~-----------------~kd~~~-pCGH~~Cc~C~~~l----~-~CPiCR~~I~~ 461 (466)
++...|+|||.. .++-.+ ||-|.+-..|.... + .||.||.++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 455689999972 112234 99999988999864 2 79999998753
No 105
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=88.08 E-value=5 Score=43.48 Aligned_cols=135 Identities=17% Similarity=0.169 Sum_probs=82.7
Q ss_pred cCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHH-HHHhhcccccCCCCccceEeeCCCCCCCCccccc
Q 012303 120 AGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAI-SIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSF 198 (466)
Q Consensus 120 ~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI-~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f 198 (466)
++.+ --+++-||=|+|+.- . +=+..+|+ -++.++... +++.+-++-|-.. .++..+
T Consensus 269 gk~~-GpvilllD~SGSM~G--~--------------~e~~AKAvalAl~~~ala--enR~~~~~lF~s~-~~~~el--- 325 (437)
T COG2425 269 GKSE-GPVILLLDKSGSMSG--F--------------KEQWAKAVALALMRIALA--ENRDCYVILFDSE-VIEYEL--- 325 (437)
T ss_pred cCCC-CCEEEEEeCCCCcCC--c--------------HHHHHHHHHHHHHHHHHH--hccceEEEEeccc-ceeeee---
Confidence 4444 479999999999952 1 11222222 122222222 3456778888662 111121
Q ss_pred CCCCCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcC-CceEEEEEEeCCccccCCCcccCcCchhHHHH
Q 012303 199 YPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG-GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 277 (466)
Q Consensus 199 ~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~-~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~T 277 (466)
.+...|++++++--. .+--+| |+|...|..|++.+++.. .+ .=||+||||.-.. +.+....
T Consensus 326 ---~~k~~~~~e~i~fL~----~~f~GG-TD~~~~l~~al~~~k~~~~~~-adiv~ITDg~~~~---------~~~~~~~ 387 (437)
T COG2425 326 ---YEKKIDIEELIEFLS----YVFGGG-TDITKALRSALEDLKSRELFK-ADIVVITDGEDER---------LDDFLRK 387 (437)
T ss_pred ---cCCccCHHHHHHHHh----hhcCCC-CChHHHHHHHHHHhhcccccC-CCEEEEeccHhhh---------hhHHHHH
Confidence 334568998877322 222235 999999999999998653 23 3469999997543 1246788
Q ss_pred HHHHHHccCCCeEEEEEe
Q 012303 278 VEAIVKASEYPLSIILVG 295 (466)
Q Consensus 278 i~aIv~AS~~PLSIIiVG 295 (466)
++.+.++++.=+--|+||
T Consensus 388 v~e~~k~~~~rl~aV~I~ 405 (437)
T COG2425 388 VKELKKRRNARLHAVLIG 405 (437)
T ss_pred HHHHHHHhhceEEEEEec
Confidence 888888888776666654
No 106
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=87.68 E-value=0.14 Score=52.92 Aligned_cols=47 Identities=23% Similarity=0.476 Sum_probs=40.0
Q ss_pred CCCCCCCCCccCCCCCccc--cccCcccccchhc----CCCCccccccccCcc
Q 012303 417 TSDNHVCPICLTDPKDMAF--GCGHQTCCGCGQD----LDLCPICRSFIQTRI 463 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~--pCGH~~Cc~C~~~----l~~CPiCR~~I~~~i 463 (466)
.....+|.+|-...+|+.. -|=|.||..|+-+ ...||.|...|.+..
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 4556799999999999985 9999999999975 358999999887754
No 107
>PF04641 Rtf2: Rtf2 RING-finger
Probab=87.68 E-value=0.22 Score=49.80 Aligned_cols=44 Identities=18% Similarity=0.438 Sum_probs=34.9
Q ss_pred CCCCCCCCccCCCC----Cccc-cccCcccccchhcCC---CCccccccccC
Q 012303 418 SDNHVCPICLTDPK----DMAF-GCGHQTCCGCGQDLD---LCPICRSFIQT 461 (466)
Q Consensus 418 ~e~~~CpICl~~~k----d~~~-pCGH~~Cc~C~~~l~---~CPiCR~~I~~ 461 (466)
.....|||+..... -.++ +|||+++..|...+. .||+|-.+++.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcccc
Confidence 34468999986542 2345 999999999999886 79999999875
No 108
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=87.49 E-value=0.13 Score=56.16 Aligned_cols=43 Identities=23% Similarity=0.606 Sum_probs=36.0
Q ss_pred CCCCCCCCccCCCCCccc-cccCcccccchhcC---------CCCcccccccc
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL---------DLCPICRSFIQ 460 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l---------~~CPiCR~~I~ 460 (466)
.++.+|.+|-+...|.+. .|-|.||+.|...- -.||.|..+.+
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 455799999999999998 99999999999521 37999987654
No 109
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=85.77 E-value=0.45 Score=49.37 Aligned_cols=41 Identities=27% Similarity=0.614 Sum_probs=30.9
Q ss_pred CCCCCCCCccCCCCCcc-c-cccCcccccchhc----CCCCcccccc
Q 012303 418 SDNHVCPICLTDPKDMA-F-GCGHQTCCGCGQD----LDLCPICRSF 458 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~-~-pCGH~~Cc~C~~~----l~~CPiCR~~ 458 (466)
.+..+||+|+....++. + --|-++|..|+.. -.+||+-.-|
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 34569999998877764 4 6799999999974 3489975444
No 110
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=84.77 E-value=14 Score=35.22 Aligned_cols=145 Identities=13% Similarity=0.185 Sum_probs=78.5
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCCC-------Cccc
Q 012303 127 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHD-------QEVF 196 (466)
Q Consensus 127 livaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~---yD~D~~ip~fGFGa~~~~~-------~~vF 196 (466)
+++.||.+.|+..... + ...+.+.|++.|-.+++. ....-.+-++.||...+.. .+|+
T Consensus 2 ~vflID~s~sM~~~~~-----------~-~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~ 69 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSS-----------E-SESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIF 69 (224)
T ss_dssp EEEEEE-SCGGGS-BT-----------T-CS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEE
T ss_pred EEEEEECCHHHCCCCC-----------C-cchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceE
Confidence 6899999999953210 0 112788888888876653 3333579999999876543 3455
Q ss_pred ccCCCCCccCCHHHHHHHHHHhCCCcee----------cCCCChHHHHHHHHHHHHh--cCCce--EEEEEEeCCccccC
Q 012303 197 SFYPDEKFCNGFEEVLRRYRELVPHLRL----------AGPTSFAPIIEMAITIVEH--SGGQY--HVLVIIADGQVTRS 262 (466)
Q Consensus 197 ~f~~~~~~c~G~egvl~~Yr~~l~~v~L----------sGPT~FapII~~a~~~v~~--s~~~Y--~VLlIITDG~i~d~ 262 (466)
.+.+-+. -+++.+.+ +...++- .....+..++-.+..+..+ ...++ --+++|||++--.
T Consensus 70 ~l~~l~~--~~~~~l~~----L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~- 142 (224)
T PF03731_consen 70 VLQPLDP--PSAERLKE----LEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPH- 142 (224)
T ss_dssp EEEECC----BHHHHHH----HHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTT-
T ss_pred EeecCCc--cCHHHHHH----HHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCC-
Confidence 5543221 13333322 1111111 2345677777778777654 33333 3468899875332
Q ss_pred CCcccCcCchhHHHHHHH--HHHccCCCeEEEEEec
Q 012303 263 VDTEHGQLSSQEKKTVEA--IVKASEYPLSIILVGV 296 (466)
Q Consensus 263 ~d~~~~~~s~~~~~Ti~a--Iv~AS~~PLSIIiVGV 296 (466)
+ =.++.+.+++. ..+....-+.|.++.+
T Consensus 143 -----~-~~~~~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 143 -----E-DDDELERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp -----T--CCCHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred -----C-CHHHHHHHHHhhccccchhcCcceeEeec
Confidence 1 12246666666 6677788888888888
No 111
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=84.25 E-value=0.28 Score=38.46 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=24.3
Q ss_pred CCCCCCCccCCCCCccc--cccCcccccchhcC------CCCcc
Q 012303 419 DNHVCPICLTDPKDMAF--GCGHQTCCGCGQDL------DLCPI 454 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l------~~CPi 454 (466)
-+..|||.+...++++. .|||.|..+.+..+ ..||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 34689999999999997 99999998887643 26987
No 112
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=83.01 E-value=7.3 Score=39.55 Aligned_cols=145 Identities=16% Similarity=0.233 Sum_probs=93.3
Q ss_pred cCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHH-hhc-ccccCCCCccceEeeCCCCCCCCcccc
Q 012303 120 AGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISII-GKT-LSSFDEDNLIPCFGFGDASTHDQEVFS 197 (466)
Q Consensus 120 ~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~I-g~v-L~~yD~D~~ip~fGFGa~~~~~~~vF~ 197 (466)
.|=...=++++||-|+|+.- +.=.+|.+.+ ... -..|-.-..+-+.+|=.. +.++ -
T Consensus 74 ~~r~g~lvvfvVDASgSM~~------------------~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~---~A~l-l 131 (261)
T COG1240 74 EGRAGNLIVFVVDASGSMAA------------------RRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGE---KAEL-L 131 (261)
T ss_pred ccCcCCcEEEEEeCcccchh------------------HHHHHHHHHHHHHHHHHHHHccceEEEEEecCC---cceE-E
Confidence 35554446789999999952 2112233322 222 245666668888888542 1222 1
Q ss_pred cCCCCCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcC----CceEEEEEEeCCccccCCCcccCcCchh
Q 012303 198 FYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG----GQYHVLVIIADGQVTRSVDTEHGQLSSQ 273 (466)
Q Consensus 198 f~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~----~~Y~VLlIITDG~i~d~~d~~~~~~s~~ 273 (466)
+.| -..++.+ .+.+..+.-.|-|-.++-|.++.++..+.. ..-.++|+||||...+.. .+.+
T Consensus 132 l~p----T~sv~~~----~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~-----~~~~- 197 (261)
T COG1240 132 LPP----TSSVELA----ERALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPI-----PLGP- 197 (261)
T ss_pred eCC----cccHHHH----HHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCC-----CCch-
Confidence 212 2244444 344556677899999999999999875542 345788999999977522 1222
Q ss_pred HHHHHHHHHHccCCCeEEEEEecCCCC
Q 012303 274 EKKTVEAIVKASEYPLSIILVGVGDGP 300 (466)
Q Consensus 274 ~~~Ti~aIv~AS~~PLSIIiVGVGd~~ 300 (466)
+.+|.++-.++...++-+++|....+.
T Consensus 198 ~~e~~~~a~~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 198 KAETLEAASKLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred HHHHHHHHHHHhhcCCcEEEEecCCcc
Confidence 678888888888889988999887765
No 113
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.41 E-value=0.38 Score=51.26 Aligned_cols=28 Identities=32% Similarity=0.800 Sum_probs=23.5
Q ss_pred CCCCCccCCCCC---ccc-cccCcccccchhc
Q 012303 421 HVCPICLTDPKD---MAF-GCGHQTCCGCGQD 448 (466)
Q Consensus 421 ~~CpICl~~~kd---~~~-pCGH~~Cc~C~~~ 448 (466)
-.|.||++...- +.+ ||+|.+|..|...
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kd 216 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKD 216 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHH
Confidence 589999998755 445 9999999999873
No 114
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=79.26 E-value=0.61 Score=49.58 Aligned_cols=42 Identities=29% Similarity=0.708 Sum_probs=0.0
Q ss_pred CCCCCCccCC-------------------CCCccc-cccCcccccchhcC-------------CCCccccccccC
Q 012303 420 NHVCPICLTD-------------------PKDMAF-GCGHQTCCGCGQDL-------------DLCPICRSFIQT 461 (466)
Q Consensus 420 ~~~CpICl~~-------------------~kd~~~-pCGH~~Cc~C~~~l-------------~~CPiCR~~I~~ 461 (466)
..+||+|+.. +-.-+| ||||++--+.+.-+ ..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 5799999851 223367 99999755665532 169999999875
No 115
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=79.19 E-value=1 Score=46.73 Aligned_cols=43 Identities=28% Similarity=0.644 Sum_probs=27.8
Q ss_pred CCCCCCCccCC-------------------CCCccc-cccCcccccchhcC-------------CCCccccccccC
Q 012303 419 DNHVCPICLTD-------------------PKDMAF-GCGHQTCCGCGQDL-------------DLCPICRSFIQT 461 (466)
Q Consensus 419 e~~~CpICl~~-------------------~kd~~~-pCGH~~Cc~C~~~l-------------~~CPiCR~~I~~ 461 (466)
.+.+||+|+.. +-+-+| ||||++--.-..-+ -.||.|-+....
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 34689999862 334467 99999644332211 159999887655
No 116
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=77.69 E-value=4.3 Score=39.55 Aligned_cols=138 Identities=19% Similarity=0.263 Sum_probs=76.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc--cC-CCCccceEeeCCCCCC---CCcccccC
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS--FD-EDNLIPCFGFGDASTH---DQEVFSFY 199 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~--yD-~D~~ip~fGFGa~~~~---~~~vF~f~ 199 (466)
-+++-+|.++|+. ++++|.+ |.=.|.+ ...|.+ |- +--.+-+..||..... .-++-+|+
T Consensus 5 P~~lllDtSgSM~--------Ge~Ieal----N~Glq~m---~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF~ 69 (207)
T COG4245 5 PCYLLLDTSGSMI--------GEPIEAL----NAGLQMM---IDTLKQDPYALERVELSIVTFGGPARVIQPFTDAANFN 69 (207)
T ss_pred CEEEEEecCcccc--------cccHHHH----HHHHHHH---HHHHHhChhhhheeEEEEEEecCcceEEechhhHhhcC
Confidence 4678899999983 4567633 3322222 222221 11 1125777888863221 11223444
Q ss_pred CCCCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc--------CCce-EEEEEEeCCccccCCCcccCcC
Q 012303 200 PDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--------GGQY-HVLVIIADGQVTRSVDTEHGQL 270 (466)
Q Consensus 200 ~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s--------~~~Y-~VLlIITDG~i~d~~d~~~~~~ 270 (466)
| |.+.-.|-|...-.|+.+.+.+++. .+.| .+..+||||..+|
T Consensus 70 ~-------------------p~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD--------- 121 (207)
T COG4245 70 P-------------------PILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTD--------- 121 (207)
T ss_pred C-------------------CceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcch---------
Confidence 3 3455668899999999999998754 1233 4568899999998
Q ss_pred chhHHHH--HHHHHHccCCCeEEEEEecCCCCCCcccccC
Q 012303 271 SSQEKKT--VEAIVKASEYPLSIILVGVGDGPWDMMREFD 308 (466)
Q Consensus 271 s~~~~~T--i~aIv~AS~~PLSIIiVGVGd~~f~~M~~LD 308 (466)
+.++- +..--.++.--+-+..||+-..+-..++++-
T Consensus 122 --~w~~~~~~~~~~~~~~k~v~a~~~G~~~ad~~~L~qit 159 (207)
T COG4245 122 --DWQAGAALVFQGERRAKSVAAFSVGVQGADNKTLNQIT 159 (207)
T ss_pred --HHHhHHHHhhhcccccceEEEEEecccccccHHHHHHH
Confidence 23332 3223334444444444444445655555443
No 117
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=75.50 E-value=1.7 Score=36.63 Aligned_cols=31 Identities=23% Similarity=0.612 Sum_probs=24.2
Q ss_pred CCCCCCCCccCCCCCccc---cccCcccccchhc
Q 012303 418 SDNHVCPICLTDPKDMAF---GCGHQTCCGCGQD 448 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~---pCGH~~Cc~C~~~ 448 (466)
.+...|.+|-....+.+| ||||.+-..|..+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 445689999987776654 9999988888754
No 118
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=74.05 E-value=1.2 Score=45.91 Aligned_cols=37 Identities=30% Similarity=0.654 Sum_probs=31.7
Q ss_pred CCCCCccCCCCCccc--cccCcccccchhcC-----CCCccccc
Q 012303 421 HVCPICLTDPKDMAF--GCGHQTCCGCGQDL-----DLCPICRS 457 (466)
Q Consensus 421 ~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l-----~~CPiCR~ 457 (466)
..|+.|-...++++- -|||.||-+|+... ..||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 689999999998885 78999999999842 48999976
No 119
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=73.12 E-value=1.2 Score=46.10 Aligned_cols=27 Identities=30% Similarity=0.829 Sum_probs=22.8
Q ss_pred cccCcccccchhcC--CCCccccccccCc
Q 012303 436 GCGHQTCCGCGQDL--DLCPICRSFIQTR 462 (466)
Q Consensus 436 pCGH~~Cc~C~~~l--~~CPiCR~~I~~~ 462 (466)
||.|.||.+|+..- +.||.|--+|.+.
T Consensus 108 PCkHvFCl~CAr~~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 108 PCKHVFCLECARSDSDKICPLCDDRVQRI 136 (389)
T ss_pred ccchhhhhhhhhcCccccCcCcccHHHHH
Confidence 99999999999854 5899998877653
No 120
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=71.19 E-value=1 Score=54.39 Aligned_cols=44 Identities=30% Similarity=0.709 Sum_probs=31.5
Q ss_pred CCCCCCCCccCCCCCcc--c--cccCcccccchhcC--------------CCCccccccccC
Q 012303 418 SDNHVCPICLTDPKDMA--F--GCGHQTCCGCGQDL--------------DLCPICRSFIQT 461 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~--~--pCGH~~Cc~C~~~l--------------~~CPiCR~~I~~ 461 (466)
..+..|.||++..-.++ + .|||+|=-.|..++ ..||+|.++|..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 34469999998765543 3 99999855554421 279999999875
No 121
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=69.68 E-value=1.2 Score=50.36 Aligned_cols=45 Identities=33% Similarity=0.659 Sum_probs=37.0
Q ss_pred CCCCCCCCccCCCCCccc-cccCcccccchhcC-------CCCccccccccCc
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-------DLCPICRSFIQTR 462 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-------~~CPiCR~~I~~~ 462 (466)
....+|+||+..-+++.+ .|-|.+|..|...+ ..||+|+..++.+
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 345799999999999976 99999999888754 2799999877654
No 122
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.55 E-value=1.8 Score=39.94 Aligned_cols=38 Identities=39% Similarity=1.026 Sum_probs=25.6
Q ss_pred CCCCCCCCccCCCCCccc--cccCcc------cc-cchhcC--------CCCccccccc
Q 012303 418 SDNHVCPICLTDPKDMAF--GCGHQT------CC-GCGQDL--------DLCPICRSFI 459 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~--pCGH~~------Cc-~C~~~l--------~~CPiCR~~I 459 (466)
.++..|-||.. +.| +|||.| || .|+-++ ..|-.||...
T Consensus 63 ~ddatC~IC~K----TKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 63 GDDATCGICHK----TKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred CcCcchhhhhh----cccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 46679999984 234 899985 23 666543 2588888653
No 123
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=69.04 E-value=14 Score=36.70 Aligned_cols=51 Identities=20% Similarity=0.431 Sum_probs=33.2
Q ss_pred CceEEEEEEeCCccccCC---CcccCcCchhHHHHHHHHHHccCCCeEEEEEecCC
Q 012303 246 GQYHVLVIIADGQVTRSV---DTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 298 (466)
Q Consensus 246 ~~Y~VLlIITDG~i~d~~---d~~~~~~s~~~~~Ti~aIv~AS~~PLSIIiVGVGd 298 (466)
.+=-||++|+||...|.. +....-|..+++++++.|... -++-++-||||.
T Consensus 134 e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~~--~~Vel~aiGIg~ 187 (219)
T PF11775_consen 134 EQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIETR--SDVELIAIGIGH 187 (219)
T ss_pred ccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHhcc--CCcEEEEEEcCC
Confidence 344699999999998621 112223555666666666533 467788888886
No 124
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=67.66 E-value=1.5 Score=40.33 Aligned_cols=41 Identities=29% Similarity=0.827 Sum_probs=33.6
Q ss_pred CCCCccCCCCCccc-----cccCcccccchhcCC-------CCccccccccCc
Q 012303 422 VCPICLTDPKDMAF-----GCGHQTCCGCGQDLD-------LCPICRSFIQTR 462 (466)
Q Consensus 422 ~CpICl~~~kd~~~-----pCGH~~Cc~C~~~l~-------~CPiCR~~I~~~ 462 (466)
+|-||.|.-.+.-| =||-..|-.|--.|+ .||+|+..+.+.
T Consensus 82 eCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 82 ECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 89999998888876 589999988776553 799999987653
No 125
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=64.64 E-value=74 Score=35.79 Aligned_cols=152 Identities=13% Similarity=0.224 Sum_probs=88.3
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCC----CCccccc
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTH----DQEVFSF 198 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~---yD~D~~ip~fGFGa~~~~----~~~vF~f 198 (466)
-+++.||.|.|+-.. . ..+ +...+.+.|++.|-.+++. ..+.-+|-++-||...+. ..+|+-+
T Consensus 12 ailflIDvs~sM~~~---~---~~~----~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~ 81 (584)
T TIGR00578 12 SLIFLVDASKAMFEE---S---QGE----DELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVL 81 (584)
T ss_pred EEEEEEECCHHHcCC---C---cCc----CcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEE
Confidence 599999999998521 0 011 1357888888888776553 455669999999987653 2345444
Q ss_pred CC-CCCccCCHHHHHHHHHHhCCC---------ceecCCCChHHHHHHHHHHHHhcCCce--EEEEEEeCCccccCCCcc
Q 012303 199 YP-DEKFCNGFEEVLRRYRELVPH---------LRLAGPTSFAPIIEMAITIVEHSGGQY--HVLVIIADGQVTRSVDTE 266 (466)
Q Consensus 199 ~~-~~~~c~G~egvl~~Yr~~l~~---------v~LsGPT~FapII~~a~~~v~~s~~~Y--~VLlIITDG~i~d~~d~~ 266 (466)
++ +.| +++.|.+. +...+. ...+...+++.++-.++++....+.+| -=+++|||-+ .+
T Consensus 82 ~~L~~p---~a~~i~~L-~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D------~P 151 (584)
T TIGR00578 82 QELDNP---GAKRILEL-DQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNED------NP 151 (584)
T ss_pred eeCCCC---CHHHHHHH-HHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCC------CC
Confidence 43 333 33322211 111111 111223478999998888876433233 2268888743 33
Q ss_pred cCcCchhHHHHHHHHHHccCCCeEEEEEecC
Q 012303 267 HGQLSSQEKKTVEAIVKASEYPLSIILVGVG 297 (466)
Q Consensus 267 ~~~~s~~~~~Ti~aIv~AS~~PLSIIiVGVG 297 (466)
|+.=+.....+..-+.+..++-+.|-++.+.
T Consensus 152 ~~~~~~~~~~a~~~a~dl~~~gi~ielf~l~ 182 (584)
T TIGR00578 152 HGNDSAKASRARTKAGDLRDTGIFLDLMHLK 182 (584)
T ss_pred CCCchhHHHHHHHHHHHHHhcCeEEEEEecC
Confidence 3332222344444567777889999888775
No 126
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=64.55 E-value=1.9 Score=36.23 Aligned_cols=39 Identities=31% Similarity=0.633 Sum_probs=27.2
Q ss_pred CCCCccCCCCCc--cc-cccCcccccchhcC-------CCCcccccccc
Q 012303 422 VCPICLTDPKDM--AF-GCGHQTCCGCGQDL-------DLCPICRSFIQ 460 (466)
Q Consensus 422 ~CpICl~~~kd~--~~-pCGH~~Cc~C~~~l-------~~CPiCR~~I~ 460 (466)
.||.|--..-|. ++ -|-|.|=..|+.+. -.||+||+..+
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 566665544443 23 89999888998754 27999999754
No 127
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=61.83 E-value=2.9 Score=31.84 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=19.2
Q ss_pred CCCCCccCCCCCccc--cccCcccccchh--------cCCCCcccccc
Q 012303 421 HVCPICLTDPKDMAF--GCGHQTCCGCGQ--------DLDLCPICRSF 458 (466)
Q Consensus 421 ~~CpICl~~~kd~~~--pCGH~~Cc~C~~--------~l~~CPiCR~~ 458 (466)
..||+....-+.++- .|.|.-|.+=.. ....||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 479999998888886 999997763221 22479999874
No 128
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.09 E-value=2.7 Score=49.15 Aligned_cols=44 Identities=30% Similarity=0.591 Sum_probs=29.7
Q ss_pred CCCCCCCCccCCC--CCccc------cccCcccccchhcC------CCCccccccccC
Q 012303 418 SDNHVCPICLTDP--KDMAF------GCGHQTCCGCGQDL------DLCPICRSFIQT 461 (466)
Q Consensus 418 ~e~~~CpICl~~~--kd~~~------pCGH~~Cc~C~~~l------~~CPiCR~~I~~ 461 (466)
....+|+||.... .|..+ .|.|-|=..|.-++ ..||.||..|+-
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 4457999998632 22222 46677766787654 389999988764
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=60.59 E-value=9.7 Score=39.81 Aligned_cols=42 Identities=31% Similarity=0.778 Sum_probs=31.5
Q ss_pred CCCCCccCC---CCCccc--cccCcccccchhcCC----CCccccccccCc
Q 012303 421 HVCPICLTD---PKDMAF--GCGHQTCCGCGQDLD----LCPICRSFIQTR 462 (466)
Q Consensus 421 ~~CpICl~~---~kd~~~--pCGH~~Cc~C~~~l~----~CPiCR~~I~~~ 462 (466)
..|++|-+. ....++ +|||..|-.|..... .||+||.+...-
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccC
Confidence 478888873 333445 889998889988764 799999877653
No 130
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=59.89 E-value=2.6 Score=32.35 Aligned_cols=42 Identities=33% Similarity=0.767 Sum_probs=21.9
Q ss_pred CCCCccCCCCCcccccc-CcccccchhcC----CCCccccccccCccc
Q 012303 422 VCPICLTDPKDMAFGCG-HQTCCGCGQDL----DLCPICRSFIQTRIK 464 (466)
Q Consensus 422 ~CpICl~~~kd~~~pCG-H~~Cc~C~~~l----~~CPiCR~~I~~~i~ 464 (466)
.|.-|+-..+..+ .|. |..|..|...+ ..||+|..++.++|+
T Consensus 4 nCKsCWf~~k~Li-~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 4 NCKSCWFANKGLI-KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR 50 (50)
T ss_dssp ---SS-S--SSEE-E-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred cChhhhhcCCCee-eecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence 5777875444333 576 77788999976 379999999998875
No 131
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=59.36 E-value=5.6 Score=42.08 Aligned_cols=10 Identities=40% Similarity=0.959 Sum_probs=8.4
Q ss_pred CCcccccccc
Q 012303 451 LCPICRSFIQ 460 (466)
Q Consensus 451 ~CPiCR~~I~ 460 (466)
.||+||+++-
T Consensus 342 ~CPtCRa~FC 351 (358)
T PF10272_consen 342 PCPTCRAKFC 351 (358)
T ss_pred CCCCCcccce
Confidence 6999999864
No 132
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=58.88 E-value=3.7 Score=33.30 Aligned_cols=43 Identities=28% Similarity=0.488 Sum_probs=17.4
Q ss_pred CCCCCCccCCCC-C---ccc-----cccCcccccchhcC-----------C----CCccccccccCc
Q 012303 420 NHVCPICLTDPK-D---MAF-----GCGHQTCCGCGQDL-----------D----LCPICRSFIQTR 462 (466)
Q Consensus 420 ~~~CpICl~~~k-d---~~~-----pCGH~~Cc~C~~~l-----------~----~CPiCR~~I~~~ 462 (466)
+.+|.||+.... + +.+ .|++.+=..|+... . .||.|+.+|+-.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 358999998644 2 223 34433222565421 1 599999998754
No 133
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=58.85 E-value=5.2 Score=41.68 Aligned_cols=46 Identities=7% Similarity=-0.055 Sum_probs=36.2
Q ss_pred CCCCCCccCCCCCccc-cccCcccc-cchhcC--CCCccccccccCcccc
Q 012303 420 NHVCPICLTDPKDMAF-GCGHQTCC-GCGQDL--DLCPICRSFIQTRIKL 465 (466)
Q Consensus 420 ~~~CpICl~~~kd~~~-pCGH~~Cc-~C~~~l--~~CPiCR~~I~~~i~l 465 (466)
..+|-+|-++....++ +|||+..| +|+... -.||.|..-.-..++|
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 3699999999999998 99999555 999843 3899998766555443
No 134
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=57.40 E-value=7.7 Score=40.48 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=36.8
Q ss_pred CCCCCCCCccCCCCCccc-cccCcccc-cchhcC-----CCCccccccccCcccc
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQTCC-GCGQDL-----DLCPICRSFIQTRIKL 465 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~~Cc-~C~~~l-----~~CPiCR~~I~~~i~l 465 (466)
.....|.+|+++..-... +|||.+.| .|+.+. ..|++|..-+++...|
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 455689999999988887 99999544 776654 4699998877765543
No 135
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=56.60 E-value=1.1e+02 Score=37.10 Aligned_cols=147 Identities=14% Similarity=0.248 Sum_probs=92.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
-.+.|-+|-++|.. +..+| -|-..+-.+|.-+.+|..+-..-|+-.......|| .++.
T Consensus 226 KdiviLlD~SgSm~--------g~~~~----------lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~----~~~l 283 (1104)
T KOG2353|consen 226 KDIVILLDVSGSMS--------GLRLD----------LAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCF----NGTL 283 (1104)
T ss_pred cceEEEEecccccc--------chhhH----------HHHHHHHHHHHhcccCCeEEEEeeccccCcccccc----cCce
Confidence 46888899998873 22333 33344555666666666777778876544333332 2344
Q ss_pred cCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc---------CCceEEEEEEeCCccccCCCcccCcCchhHH
Q 012303 205 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS---------GGQYHVLVIIADGQVTRSVDTEHGQLSSQEK 275 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s---------~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~ 275 (466)
+++--...+..++.+..++..|-++|.-+.+.|.+..... +.-+.+.++||||...+ -+
T Consensus 284 vqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~------------~~ 351 (1104)
T KOG2353|consen 284 VQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDEN------------AK 351 (1104)
T ss_pred eecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCccc------------HH
Confidence 5555556666778888888899999999999998876432 11478889999999765 23
Q ss_pred HHHHHHHHc-cCCCeEEEEEecCCCCCCccc
Q 012303 276 KTVEAIVKA-SEYPLSIILVGVGDGPWDMMR 305 (466)
Q Consensus 276 ~Ti~aIv~A-S~~PLSIIiVGVGd~~f~~M~ 305 (466)
+..+.--.- -..-++=.+||-+..+|+.++
T Consensus 352 ~If~~yn~~~~~Vrvftflig~~~~~~~~~~ 382 (1104)
T KOG2353|consen 352 EIFEKYNWPDKKVRVFTFLIGDEVYDLDEIQ 382 (1104)
T ss_pred HHHHhhccCCCceEEEEEEecccccccccch
Confidence 333322221 123345566776666666644
No 136
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.42 E-value=5.4 Score=40.76 Aligned_cols=43 Identities=21% Similarity=0.538 Sum_probs=30.2
Q ss_pred CCCCCCCccCCCCCcc-----------ccccCcccccchhcC------CCCccccccccC
Q 012303 419 DNHVCPICLTDPKDMA-----------FGCGHQTCCGCGQDL------DLCPICRSFIQT 461 (466)
Q Consensus 419 e~~~CpICl~~~kd~~-----------~pCGH~~Cc~C~~~l------~~CPiCR~~I~~ 461 (466)
++..|.||-......+ +.|+|.+=-.|+... ..||-|+..++.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 3458999976543322 499999866777643 489999988764
No 137
>PHA03096 p28-like protein; Provisional
Probab=53.11 E-value=4.2 Score=41.71 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=22.5
Q ss_pred CCCCCccCCCC--------Cccc-cccCcccccchhcC
Q 012303 421 HVCPICLTDPK--------DMAF-GCGHQTCCGCGQDL 449 (466)
Q Consensus 421 ~~CpICl~~~k--------d~~~-pCGH~~Cc~C~~~l 449 (466)
.+|-||+++.. ...+ .|-|.+|-.|...+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHH
Confidence 58999998643 2344 99999999998844
No 138
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=50.57 E-value=40 Score=37.75 Aligned_cols=170 Identities=13% Similarity=0.179 Sum_probs=95.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCC---CCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTH---DQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~---~~~vF~f~~~ 201 (466)
+-|.+-||.|.|.... ++ +.. ...--..+|+..++.-++.-.+- ..+++|-.+... -+.|-.|+.
T Consensus 447 la~TLLvD~S~St~a~----md-etr----Rvidl~~eaL~~la~~~qa~gd~--~~~~~fts~rr~~vri~tvk~FDe- 514 (637)
T COG4548 447 LAFTLLVDVSASTDAK----MD-ETR----RVIDLFHEALLVLAHGHQALGDS--EDILDFTSRRRPWVRINTVKDFDE- 514 (637)
T ss_pred ceeEEEeecccchHHH----hh-hhh----hhHHHHHHHHHHhhchhhhhCCH--HHhcCchhhcCcceeeeeeecccc-
Confidence 3478899999998521 11 000 01234556666665544443322 334555443221 112323321
Q ss_pred CCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAI 281 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aI 281 (466)
..-.-++ ..+-.++..--|--...|++|.+..-+..+.=-.|+++|||...| +|--.|+. -...|.+|+
T Consensus 515 -s~~~~~~-------~RImALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd-~d~YEgr~--gIeDTr~AV 583 (637)
T COG4548 515 -SMGETVG-------PRIMALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPND-FDHYEGRF--GIEDTREAV 583 (637)
T ss_pred -ccccccc-------hhheecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCccc-cccccccc--chhhHHHHH
Confidence 1110111 111223344457778889988776544444557889999999987 55333444 368899999
Q ss_pred HHccCCCeEEEEEecCCCCCCcccccCCCCCccccceeeeec
Q 012303 282 VKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVN 323 (466)
Q Consensus 282 v~AS~~PLSIIiVGVGd~~f~~M~~LDd~~~~R~rDNvqFV~ 323 (466)
.+|-+.-|+++-|=|-...-+.+-.+-+ .|.+-||.
T Consensus 584 ~eaRk~Gi~VF~Vtld~ea~~y~p~~fg------qngYa~V~ 619 (637)
T COG4548 584 IEARKSGIEVFNVTLDREAISYLPALFG------QNGYAFVE 619 (637)
T ss_pred HHHHhcCceEEEEEecchhhhhhHHHhc------cCceEEcc
Confidence 9999999999999887765443332221 26667775
No 139
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.91 E-value=6.1 Score=42.16 Aligned_cols=38 Identities=26% Similarity=0.568 Sum_probs=26.3
Q ss_pred CCCCCccCCC----CCccccccCcccccchhcCC-------CCcccccc
Q 012303 421 HVCPICLTDP----KDMAFGCGHQTCCGCGQDLD-------LCPICRSF 458 (466)
Q Consensus 421 ~~CpICl~~~----kd~~~pCGH~~Cc~C~~~l~-------~CPiCR~~ 458 (466)
-.|||=.+.. .-+.+.|||+.|.+-+.++. +||-|-.-
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 3677755432 22335999999998888763 69999653
No 140
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=44.83 E-value=51 Score=37.26 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCceEEEEEEeCCccccCCCc----ccCcCchhHHHHHHHHHHccCC-CeEEEEEecCCC
Q 012303 234 IEMAITIVEHSGGQYHVLVIIADGQVTRSVDT----EHGQLSSQEKKTVEAIVKASEY-PLSIILVGVGDG 299 (466)
Q Consensus 234 I~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~----~~~~~s~~~~~Ti~aIv~AS~~-PLSIIiVGVGd~ 299 (466)
|.-|.+...+...+=-||++|+||+..|. .| ..+-|-.+++++|.. ...- |+=++-||||..
T Consensus 502 l~wa~~rL~~R~e~rKiL~ViSDG~P~D~-~TlsvN~~~~l~~hLr~vi~~---~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 502 LMWAHQRLIARPEQRRILMMISDGAPVDD-STLSVNPGNYLERHLRAVIEE---IETRSPVELLAIGIGHD 568 (600)
T ss_pred HHHHHHHHhcCcccceEEEEEeCCCcCCc-cccccCchhHHHHHHHHHHHH---HhccCCceEEEeecccc
Confidence 34443333333445579999999999871 11 122343334444443 4443 788888888874
No 141
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=41.40 E-value=3.8 Score=49.37 Aligned_cols=42 Identities=43% Similarity=1.025 Sum_probs=32.2
Q ss_pred CCCCCCCCccCCCCC--ccccccCcccccchhcC----CCCccccccc
Q 012303 418 SDNHVCPICLTDPKD--MAFGCGHQTCCGCGQDL----DLCPICRSFI 459 (466)
Q Consensus 418 ~e~~~CpICl~~~kd--~~~pCGH~~Cc~C~~~l----~~CPiCR~~I 459 (466)
.+...|.||++--++ +++.|||-+||.|.... ..||+|..-+
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 344699999997663 44499999999998754 4899998543
No 142
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=40.02 E-value=2.4e+02 Score=27.69 Aligned_cols=97 Identities=26% Similarity=0.409 Sum_probs=56.6
Q ss_pred cHHHHHHHHHhcCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCC
Q 012303 109 SLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDA 188 (466)
Q Consensus 109 ~ld~v~~al~~~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~ 188 (466)
++++| ++|.++|.+ |||+|-|.... |.+|+ +.-+.|+. .| +.-++|
T Consensus 53 T~~ev-~~l~~aGad----IIAlDaT~R~R--------p~~l~-------~li~~i~~------~~-------~l~MAD- 98 (192)
T PF04131_consen 53 TLKEV-DALAEAGAD----IIALDATDRPR--------PETLE-------ELIREIKE------KY-------QLVMAD- 98 (192)
T ss_dssp SHHHH-HHHHHCT-S----EEEEE-SSSS---------SS-HH-------HHHHHHHH------CT-------SEEEEE-
T ss_pred CHHHH-HHHHHcCCC----EEEEecCCCCC--------CcCHH-------HHHHHHHH------hC-------cEEeee-
Confidence 67888 788899999 69999996542 23443 22222222 22 333333
Q ss_pred CCCCCcccccCCCCCccCCHHHHHHHHHHhCCCc--eecCCCChH----HHHHHHHHHHHhcCCceEEEEEEeCCcccc
Q 012303 189 STHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHL--RLAGPTSFA----PIIEMAITIVEHSGGQYHVLVIIADGQVTR 261 (466)
Q Consensus 189 ~~~~~~vF~f~~~~~~c~G~egvl~~Yr~~l~~v--~LsGPT~Fa----pII~~a~~~v~~s~~~Y~VLlIITDG~i~d 261 (466)
|..+|+.+++.+--.--| .|+|-|... |=++.+.++++. + . -+|+.|.|..
T Consensus 99 ----------------ist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~-~----pvIaEGri~t 155 (192)
T PF04131_consen 99 ----------------ISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-D-V----PVIAEGRIHT 155 (192)
T ss_dssp -----------------SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-T-S----EEEEESS--S
T ss_pred ----------------cCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-C-C----cEeecCCCCC
Confidence 557788888777665544 377766654 777777777765 2 1 2889999985
No 143
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=39.89 E-value=5 Score=36.94 Aligned_cols=30 Identities=20% Similarity=0.510 Sum_probs=23.8
Q ss_pred CCCCCCccCCCCC--ccc--ccc------CcccccchhcC
Q 012303 420 NHVCPICLTDPKD--MAF--GCG------HQTCCGCGQDL 449 (466)
Q Consensus 420 ~~~CpICl~~~kd--~~~--pCG------H~~Cc~C~~~l 449 (466)
..+|.||++.--+ .++ .|| |++|.+|..+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 4699999997655 554 887 77899999876
No 144
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=38.86 E-value=1.7e+02 Score=30.22 Aligned_cols=156 Identities=18% Similarity=0.283 Sum_probs=75.3
Q ss_pred cccccccHHHHHHHHHhcCCceeceEEEEecCCCCCC---CCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCc
Q 012303 103 IDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEW---TGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNL 179 (466)
Q Consensus 103 i~~~ys~ld~v~~al~~~Gle~~nlivaIDFT~SN~~---~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ 179 (466)
+.++..-||.|.+|++.+|++- ++.+|||+.+|--+ .|+--+..++...-....=.=++-|.-..+++..
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~------ 148 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKK------ 148 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHH------
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHh------
Confidence 3444567899999999999995 99999999998754 2221111111000000000012233333334433
Q ss_pred cceEeeCCCCCCCCcccccCCCCCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcc
Q 012303 180 IPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQV 259 (466)
Q Consensus 180 ip~fGFGa~~~~~~~vF~f~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i 259 (466)
+|+...-| +|..+ ..++..+.=++.-.++++-|-..|.--.+.+.+-+++...+ . ++|-=.||
T Consensus 149 YPIvsIED---------pf~ed-----D~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~n-a--~llK~NQi 211 (295)
T PF00113_consen 149 YPIVSIED---------PFDED-----DWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACN-A--LLLKPNQI 211 (295)
T ss_dssp S-EEEEES---------SS-TT------HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--S-E--EEE-HHHH
T ss_pred cCeEEEEc---------ccccc-----chHHHHHHHHhhhcceeeecccccccchhhhhccchhhhcc-c--hhhhhhhh
Confidence 34444433 12222 34444443334445788888655544334333333332111 1 34444455
Q ss_pred ccCCCcccCcCchhHHHHHHHHHHccCCCeEEEEE
Q 012303 260 TRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILV 294 (466)
Q Consensus 260 ~d~~d~~~~~~s~~~~~Ti~aIv~AS~~PLSIIiV 294 (466)
.- .-+|++++..|...-..+|+=
T Consensus 212 gT------------vte~lea~~~a~~~g~~~vvS 234 (295)
T PF00113_consen 212 GT------------VTETLEAVKLAKSAGWGVVVS 234 (295)
T ss_dssp SS------------HHHHHHHHHHHHHTT-EEEEE
T ss_pred HH------------HHHHHHHHHHHHHCCceeecc
Confidence 42 568899999998887777663
No 145
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.45 E-value=17 Score=37.50 Aligned_cols=27 Identities=30% Similarity=0.859 Sum_probs=24.5
Q ss_pred CCCCCccCCCCCccc-cc----cCcccccchh
Q 012303 421 HVCPICLTDPKDMAF-GC----GHQTCCGCGQ 447 (466)
Q Consensus 421 ~~CpICl~~~kd~~~-pC----GH~~Cc~C~~ 447 (466)
..|.+|.|+..|..| .| .|.||.-|..
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSR 300 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSR 300 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCH
Confidence 689999999999999 88 7999998876
No 146
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=38.31 E-value=4.6 Score=41.85 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=18.1
Q ss_pred CCCCCccCCCCCc-cc---cccCcccccchh
Q 012303 421 HVCPICLTDPKDM-AF---GCGHQTCCGCGQ 447 (466)
Q Consensus 421 ~~CpICl~~~kd~-~~---pCGH~~Cc~C~~ 447 (466)
..|+|||-.+.+. +| .|-|.+=+.|..
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~Cla 146 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLA 146 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHH
Confidence 4788888655442 23 999987666654
No 147
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=37.51 E-value=3.9e+02 Score=25.91 Aligned_cols=155 Identities=19% Similarity=0.288 Sum_probs=80.7
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC--CCCccceEeeCCCCC-----C--C--C-
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD--EDNLIPCFGFGDAST-----H--D--Q- 193 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD--~D~~ip~fGFGa~~~-----~--~--~- 193 (466)
.+++.||.|...- ..+..+.++++|-..|.... ++-+|-+..|+...+ . . +
T Consensus 5 ~y~FvID~s~~av-----------------~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~ 67 (243)
T PF04811_consen 5 VYVFVIDVSYEAV-----------------QSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQM 67 (243)
T ss_dssp EEEEEEE-SHHHH-----------------HHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEE
T ss_pred EEEEEEECchhhh-----------------hccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcc
Confidence 4788899885421 13677888888888888888 888899999987642 0 0 0
Q ss_pred -------cccccCCCC-----Ccc-CCHHHHHHHHHHhCCCc-eecCCCChHHHHHHHHHHHH--hcCCceEEEEEEeCC
Q 012303 194 -------EVFSFYPDE-----KFC-NGFEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVE--HSGGQYHVLVIIADG 257 (466)
Q Consensus 194 -------~vF~f~~~~-----~~c-~G~egvl~~Yr~~l~~v-~LsGPT~FapII~~a~~~v~--~s~~~Y~VLlIITDG 257 (466)
+.|.-.+++ .+| .-++++|+.-.+..+.. .-....++.+.|+.|..+.+ ..+| .|+++. .|
T Consensus 68 ~v~~dl~~~~~p~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~gG--kI~~F~-s~ 144 (243)
T PF04811_consen 68 IVVSDLDDPFIPLPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTGG--KILVFT-SG 144 (243)
T ss_dssp EEEHHTTSHHSSTSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS-E--EEEEEE-SS
T ss_pred cchHHHhhcccCCcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccCC--EEEEEe-cc
Confidence 011111111 112 23666677665555443 13345899999999999988 5555 455554 44
Q ss_pred ccc--------cCCCcccCc--------CchhHHHHHHHHHHccCCCeEEEEEecCCCC
Q 012303 258 QVT--------RSVDTEHGQ--------LSSQEKKTVEAIVKASEYPLSIILVGVGDGP 300 (466)
Q Consensus 258 ~i~--------d~~d~~~~~--------~s~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~ 300 (466)
..+ ...+..+.. +.++.+--.+.-.++++.-+++=+...+...
T Consensus 145 ~pt~G~Gg~l~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~ 203 (243)
T PF04811_consen 145 PPTYGPGGSLKKREDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDY 203 (243)
T ss_dssp ---SSSTTSS-SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS-
T ss_pred CCCCCCCceecccccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 332 111110000 1111112344455577888888777777643
No 148
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=36.92 E-value=2.6e+02 Score=29.97 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=42.2
Q ss_pred cccccHHHHHHHHHhcCCce-eceEEEEecCCCCCCCCCCCCCCCCccc--CCCCCCHHHHHHHHHhhcccccC
Q 012303 105 DNYHSLEQVTDALARAGLES-SNLIVGIDFTKSNEWTGARSFQRRSLHH--IGDDQNPYEQAISIIGKTLSSFD 175 (466)
Q Consensus 105 ~~ys~ld~v~~al~~~Gle~-~nlivaIDFT~SN~~~g~~s~~~~SLH~--i~~~~N~Ye~AI~~Ig~vL~~yD 175 (466)
++-.-|+.|.+|++++|++- -++.++||+-+|--|.. ..-++ ..+..-.-++||+.+.++++.|+
T Consensus 211 ~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~------~~y~~~~~~~~~~t~~eai~~~~~l~e~~~ 278 (408)
T cd03313 211 SNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDE------GKYVYDSDEGKKLTSEELIDYYKELVKKYP 278 (408)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhccc------CcceeccCCCcccCHHHHHHHHHHHHHhCC
Confidence 34445677999999999982 27999999988743311 11111 11222344888888888888776
No 149
>PLN00191 enolase
Probab=36.31 E-value=3.1e+02 Score=30.08 Aligned_cols=70 Identities=20% Similarity=0.420 Sum_probs=43.1
Q ss_pred cccccHHHHHHHHHhcCCceeceEEEEecCCCCCCCCCCCCCC--CCcccCCCCCCHHHHHHHHHhhcccccC
Q 012303 105 DNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQR--RSLHHIGDDQNPYEQAISIIGKTLSSFD 175 (466)
Q Consensus 105 ~~ys~ld~v~~al~~~Gle~~nlivaIDFT~SN~~~g~~s~~~--~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD 175 (466)
++-.-|+.|.+|+.++|++ -++.+|||+-+|--|..+..|.= ++-..-+...-..+++|+.+-.+++.|+
T Consensus 241 ~~~eal~ll~eAi~~ag~~-~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~ 312 (457)
T PLN00191 241 DNKEGLELLKEAIEKAGYT-GKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYP 312 (457)
T ss_pred CHHHHHHHHHHHHHHcCCC-CceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCC
Confidence 4445688899999999999 58999999999854310001110 0000000112356888888888776665
No 150
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.18 E-value=16 Score=38.88 Aligned_cols=29 Identities=38% Similarity=0.927 Sum_probs=20.6
Q ss_pred CCCCCCcc-CCCCC--ccc--cccCcccccchhc
Q 012303 420 NHVCPICL-TDPKD--MAF--GCGHQTCCGCGQD 448 (466)
Q Consensus 420 ~~~CpICl-~~~kd--~~~--pCGH~~Cc~C~~~ 448 (466)
..+|.||+ +.... +.+ .|||.+|.+|...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~ 179 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQ 179 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHH
Confidence 45899999 33322 222 8999999999873
No 151
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=35.32 E-value=1.1e+02 Score=31.25 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHhCCCceec-CCCCh-----HHHHHHHHHHHHhcC--CceEEEEEEeCCccccCCCcccCcCch-hHHH
Q 012303 206 NGFEEVLRRYRELVPHLRLA-GPTSF-----APIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSS-QEKK 276 (466)
Q Consensus 206 ~G~egvl~~Yr~~l~~v~Ls-GPT~F-----apII~~a~~~v~~s~--~~Y~VLlIITDG~i~d~~d~~~~~~s~-~~~~ 276 (466)
.|+.+++..-++-.|.+.+. =|+.+ ++=|-.|++.+.+.+ ..|=| |||+-|+-.. .+|-. |.++
T Consensus 26 Aa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dv-iii~RGGGs~------eDL~~FN~e~ 98 (319)
T PF02601_consen 26 AAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDV-IIIIRGGGSI------EDLWAFNDEE 98 (319)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccE-EEEecCCCCh------HHhcccChHH
Confidence 35666666665655554432 24443 444666666665443 23444 5555554321 11222 4566
Q ss_pred HHHHHHHccCCCeEEEEEecCCC
Q 012303 277 TVEAIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 277 Ti~aIv~AS~~PLSIIiVGVGd~ 299 (466)
..+||. ++..| ||.|||-+
T Consensus 99 varai~-~~~~P---visaIGHe 117 (319)
T PF02601_consen 99 VARAIA-ASPIP---VISAIGHE 117 (319)
T ss_pred HHHHHH-hCCCC---EEEecCCC
Confidence 666666 44566 67888854
No 152
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=35.09 E-value=76 Score=31.62 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHHccCCC---eEEEEEecC
Q 012303 231 APIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYP---LSIILVGVG 297 (466)
Q Consensus 231 apII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~AS~~P---LSIIiVGVG 297 (466)
.|++..+++.++++++.-|++=+++||.|.- ..+.....|.-|.+.- +.|-.+.=|
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHS-----------h~~Hl~al~~~a~~~gv~~V~vH~f~DG 71 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHS-----------HIDHLFALIKLAKKQGVKKVYVHAFTDG 71 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS-------------HHHHHHHHHHHHHTT-SEEEEEEEE-S
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCccc-----------cHHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 3788899999998888899999999999985 2444444444455543 445554444
No 153
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=32.49 E-value=1.6e+02 Score=31.80 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=50.3
Q ss_pred CHHHHHHHHHH----hCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHH
Q 012303 207 GFEEVLRRYRE----LVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 282 (466)
Q Consensus 207 G~egvl~~Yr~----~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv 282 (466)
++.+.+..++. .+-.|++.. -++.-+++++.+..++.|-.- +.+|.+||..+ +.+++.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~GVR~DS-Gd~~~~~~kvr~~ld~~G~~~-~~Ii~Sdg~ld--------------e~~i~~l~ 311 (405)
T COG1488 248 AFLNAIKVAKALGDKRLDGVRLDS-GDPRELSEKVRAHLDKLGYDP-VKIIVSDGLLD--------------EKIIALLR 311 (405)
T ss_pred HHHHhHHHHHhcccccceEEECCC-CCHHHHHHHHHHHHHHcCCCc-eEEEEeCCcch--------------HHHHHHHH
Confidence 45555555554 455677654 678888889888888876544 88999999864 34444444
Q ss_pred HccCCCeEEEEEecCC
Q 012303 283 KASEYPLSIILVGVGD 298 (466)
Q Consensus 283 ~AS~~PLSIIiVGVGd 298 (466)
+...+ +..-|||.
T Consensus 312 -~~g~~--~d~FGvGT 324 (405)
T COG1488 312 -AFGAR--NDAFGVGT 324 (405)
T ss_pred -HhCCC--ccEeccch
Confidence 46666 88889985
No 154
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=32.06 E-value=13 Score=37.66 Aligned_cols=46 Identities=26% Similarity=0.656 Sum_probs=21.8
Q ss_pred CCCCCCCCccCCCCCccc-cc---c--CcccccchhcCC----CCccccccccCcc
Q 012303 418 SDNHVCPICLTDPKDMAF-GC---G--HQTCCGCGQDLD----LCPICRSFIQTRI 463 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pC---G--H~~Cc~C~~~l~----~CPiCR~~I~~~i 463 (466)
.....||||-..+.-.++ .= | |..|.-|..... .||.|-..-...+
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l 225 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKL 225 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EE
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcce
Confidence 344699999999888877 22 4 456778887542 7999977654443
No 155
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=31.84 E-value=14 Score=27.91 Aligned_cols=35 Identities=29% Similarity=0.677 Sum_probs=21.8
Q ss_pred CCCCccC--CCCCccc-ccc-----CcccccchhcC------CCCcccc
Q 012303 422 VCPICLT--DPKDMAF-GCG-----HQTCCGCGQDL------DLCPICR 456 (466)
Q Consensus 422 ~CpICl~--~~kd~~~-pCG-----H~~Cc~C~~~l------~~CPiCR 456 (466)
.|.||++ ...+..+ ||. |.+=..|..+. ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997 3334444 884 33334777653 2799995
No 156
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.90 E-value=35 Score=35.41 Aligned_cols=40 Identities=23% Similarity=0.612 Sum_probs=27.7
Q ss_pred CCCCCCCccCCCCCccc-c----cc--CcccccchhcCC----CCcccccc
Q 012303 419 DNHVCPICLTDPKDMAF-G----CG--HQTCCGCGQDLD----LCPICRSF 458 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~-p----CG--H~~Cc~C~~~l~----~CPiCR~~ 458 (466)
....||||-..+.-.++ . =| |..|..|...+. .||.|-..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 34699999999876655 3 23 445667776553 79999764
No 157
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=30.34 E-value=12 Score=30.83 Aligned_cols=37 Identities=32% Similarity=0.861 Sum_probs=17.5
Q ss_pred CCCCCccCCCCCccccccCcccccchhcCC---CCcccccccc
Q 012303 421 HVCPICLTDPKDMAFGCGHQTCCGCGQDLD---LCPICRSFIQ 460 (466)
Q Consensus 421 ~~CpICl~~~kd~~~pCGH~~Cc~C~~~l~---~CPiCR~~I~ 460 (466)
..||.|-....+. . ||..|-.|..... .||-|.++++
T Consensus 2 ~~CP~C~~~L~~~--~-~~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--G-GHYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE--T-TEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEe--C-CEEECccccccceecccCCCcccHHH
Confidence 4788887642221 2 6667777776543 6777777654
No 158
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.76 E-value=44 Score=34.81 Aligned_cols=39 Identities=23% Similarity=0.589 Sum_probs=26.4
Q ss_pred CCCCCCCccCCCCCccc-c---cc--CcccccchhcCC----CCccccc
Q 012303 419 DNHVCPICLTDPKDMAF-G---CG--HQTCCGCGQDLD----LCPICRS 457 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~-p---CG--H~~Cc~C~~~l~----~CPiCR~ 457 (466)
....||||-..+.-.++ . =| |..|..|...+. .||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45699999998876643 2 23 335667776553 7988876
No 159
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=28.61 E-value=57 Score=32.83 Aligned_cols=69 Identities=30% Similarity=0.483 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCceecCCCChHHHHHH-----------HHHHH---HhcCCceEEEEEEeCCccccCCCcccCcCchhH
Q 012303 209 EEVLRRYRELVPHLRLAGPTSFAPIIEM-----------AITIV---EHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQE 274 (466)
Q Consensus 209 egvl~~Yr~~l~~v~LsGPT~FapII~~-----------a~~~v---~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~ 274 (466)
++-|++|++.-.+++-..-..+.|-|+. +..+| +-.+..|+|.+|+-||+.. |
T Consensus 89 ~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~-------------E 155 (243)
T COG3959 89 EEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELD-------------E 155 (243)
T ss_pred HHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccc-------------c
Confidence 4556677776555443333334444332 33332 3346789999999999986 6
Q ss_pred HHHHHHHHHccCCCeE
Q 012303 275 KKTVEAIVKASEYPLS 290 (466)
Q Consensus 275 ~~Ti~aIv~AS~~PLS 290 (466)
-++-+|+..|+++-|.
T Consensus 156 G~~WEAam~Aah~~L~ 171 (243)
T COG3959 156 GQVWEAAMTAAHYKLD 171 (243)
T ss_pred ccHHHHHHHHHHhccC
Confidence 7889999999998876
No 160
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=26.93 E-value=2.1e+02 Score=25.90 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHhcCCceeceEEEEecCCCCC-------CC-----CC-----CCCCCCCcccCCCCCCHH-HHHHHHHhh
Q 012303 108 HSLEQVTDALARAGLESSNLIVGIDFTKSNE-------WT-----GA-----RSFQRRSLHHIGDDQNPY-EQAISIIGK 169 (466)
Q Consensus 108 s~ld~v~~al~~~Gle~~nlivaIDFT~SN~-------~~-----g~-----~s~~~~SLH~i~~~~N~Y-e~AI~~Ig~ 169 (466)
..|.++.+|+++.|+. +++=+||+.-+. |. |+ +...+. .|..-. ..+| +.++..|-+
T Consensus 44 Dllge~v~a~h~~Gir---v~ay~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~-~~~~c~-ns~Y~e~~~~~i~E 118 (132)
T PF14871_consen 44 DLLGEQVEACHERGIR---VPAYFDFSWDEDAAERHPEWFVRDADGRPMRGERFGYPG-WYTCCL-NSPYREFLLEQIRE 118 (132)
T ss_pred CHHHHHHHHHHHCCCE---EEEEEeeecChHHHHhCCceeeECCCCCCcCCCCcCCCC-ceecCC-CccHHHHHHHHHHH
Confidence 4788999999999987 688888883321 32 22 111111 333322 2344 677888888
Q ss_pred cccccCCCCcc
Q 012303 170 TLSSFDEDNLI 180 (466)
Q Consensus 170 vL~~yD~D~~i 180 (466)
+|+.|+-|+.|
T Consensus 119 i~~~y~~DGiF 129 (132)
T PF14871_consen 119 ILDRYDVDGIF 129 (132)
T ss_pred HHHcCCCCEEE
Confidence 99999998765
No 161
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.66 E-value=22 Score=41.54 Aligned_cols=42 Identities=26% Similarity=0.450 Sum_probs=32.2
Q ss_pred CCCCCccCCCCCccc--cccCcccccchhc-CCCCccccccccCc
Q 012303 421 HVCPICLTDPKDMAF--GCGHQTCCGCGQD-LDLCPICRSFIQTR 462 (466)
Q Consensus 421 ~~CpICl~~~kd~~~--pCGH~~Cc~C~~~-l~~CPiCR~~I~~~ 462 (466)
..|..|-...--++. .|||.+=..|..+ ...||.|+....+.
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~e~~~~ 885 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLPELRGV 885 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhccCcccCCccchhhhhh
Confidence 389999887666653 9999987788874 56899999855443
No 162
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=25.95 E-value=27 Score=29.77 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=20.4
Q ss_pred cccCcccccchhcC----CCCcccccccc
Q 012303 436 GCGHQTCCGCGQDL----DLCPICRSFIQ 460 (466)
Q Consensus 436 pCGH~~Cc~C~~~l----~~CPiCR~~I~ 460 (466)
-|.|.|=-.|+.+. ..||+||++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 79999877999875 27999999754
No 163
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.20 E-value=22 Score=40.36 Aligned_cols=25 Identities=36% Similarity=0.712 Sum_probs=19.7
Q ss_pred CCccc-cccCcccccchhcCC--CCcccc
Q 012303 431 KDMAF-GCGHQTCCGCGQDLD--LCPICR 456 (466)
Q Consensus 431 kd~~~-pCGH~~Cc~C~~~l~--~CPiCR 456 (466)
..+++ .|||..|..|...+. .|| |.
T Consensus 26 ~~Pvsl~cghtic~~c~~~lyn~scp-~~ 53 (861)
T KOG3161|consen 26 LEPVSLQCGHTICGHCVQLLYNASCP-TK 53 (861)
T ss_pred cCcccccccchHHHHHHHhHhhccCC-CC
Confidence 34555 899999999999884 788 54
No 164
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.80 E-value=3.7e+02 Score=27.04 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=28.2
Q ss_pred hhcccccccccccHHHHHHHHHhcCCceeceEEEEecCCCCCCCCCCCCC
Q 012303 97 ERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQ 146 (466)
Q Consensus 97 ~~~~~~i~~~ys~ld~v~~al~~~Gle~~nlivaIDFT~SN~~~g~~s~~ 146 (466)
-+.|+.--.+--++|||+..+ +|+++ -||.||| +++|+
T Consensus 92 cqShrlt~edpvtveyitRyi--A~~kQ-------rYTqs~g---rRPFG 129 (249)
T KOG0183|consen 92 CQSHRLTLEDPVTVEYITRYI--AGLKQ-------RYTQSNG---RRPFG 129 (249)
T ss_pred hhhhhcccCCCcHHHHHHHHH--HHhhh-------hhhccCC---ccccc
Confidence 455666667778999999887 56775 5899995 56776
No 165
>PLN02189 cellulose synthase
Probab=24.59 E-value=43 Score=40.12 Aligned_cols=40 Identities=30% Similarity=0.711 Sum_probs=29.4
Q ss_pred CCCCCccCCCC----Cccc----cccCcccccchhcC-----CCCcccccccc
Q 012303 421 HVCPICLTDPK----DMAF----GCGHQTCCGCGQDL-----DLCPICRSFIQ 460 (466)
Q Consensus 421 ~~CpICl~~~k----d~~~----pCGH~~Cc~C~~~l-----~~CPiCR~~I~ 460 (466)
+.|.||-+.-- .-.| -||--+|+.|..-- ..||.|++.-.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 59999998622 2233 58888999998743 37999998765
No 166
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=24.59 E-value=34 Score=35.91 Aligned_cols=26 Identities=35% Similarity=0.788 Sum_probs=17.0
Q ss_pred ccccccCcccc-------cchhcCCCCcccccc
Q 012303 433 MAFGCGHQTCC-------GCGQDLDLCPICRSF 458 (466)
Q Consensus 433 ~~~pCGH~~Cc-------~C~~~l~~CPiCR~~ 458 (466)
..+.|||.-=+ +-+.+-..||+||..
T Consensus 318 vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 318 VYLNCGHVHGYHNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred EEEeccccccccccccccccCcccCcCCeeeee
Confidence 34499998532 233345689999974
No 167
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=24.41 E-value=18 Score=31.32 Aligned_cols=35 Identities=26% Similarity=0.691 Sum_probs=27.2
Q ss_pred CCCCCccCCCCCccccccCcccccchhcCCCCcccccc
Q 012303 421 HVCPICLTDPKDMAFGCGHQTCCGCGQDLDLCPICRSF 458 (466)
Q Consensus 421 ~~CpICl~~~kd~~~pCGH~~Cc~C~~~l~~CPiCR~~ 458 (466)
..|..|....+..++ |..|..|+..+..|+-|..+
T Consensus 56 ~kC~~C~qktVk~AY---h~iC~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 56 KKCNKCQQKTVKHAY---HVICDPCAKELKVCAKCGKP 90 (92)
T ss_pred ccccccccchHHHHH---HHHHHHHHHhhccCcccCCC
Confidence 367777765555544 88899999999999999875
No 168
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=24.33 E-value=4.1e+02 Score=28.31 Aligned_cols=145 Identities=16% Similarity=0.263 Sum_probs=79.6
Q ss_pred hcCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCccccc
Q 012303 119 RAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSF 198 (466)
Q Consensus 119 ~~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f 198 (466)
+-|+= -.|+|.||++.+++. +-++ +|-.-..|..+-..+..|=+.|-|--.||=.-.....+...-
T Consensus 56 r~Gii-Rhl~iviD~S~am~e--------~Df~-----P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ 121 (378)
T KOG2807|consen 56 RKGII-RHLYIVIDCSRAMEE--------KDFR-----PSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTD 121 (378)
T ss_pred hhhhh-eeEEEEEEhhhhhhh--------ccCC-----chHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHH
Confidence 34555 389999999988863 2232 688888888777766666666777767763211111111110
Q ss_pred CCCCCccCCHHHHHHHHHHhCCCce-ecCCCChHHHHHHHHHHHHhcCCc--eEEEEEEeCCccccCCCcccCcCchhHH
Q 012303 199 YPDEKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEHSGGQ--YHVLVIIADGQVTRSVDTEHGQLSSQEK 275 (466)
Q Consensus 199 ~~~~~~c~G~egvl~~Yr~~l~~v~-LsGPT~FapII~~a~~~v~~s~~~--Y~VLlIITDG~i~d~~d~~~~~~s~~~~ 275 (466)
...| .+--++ ++..+. -+|--+.--.++.|++..+.-.++ =-||+|+.-=...|-. |.-
T Consensus 122 ltgn-----p~~hI~----aL~~~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPg---------di~ 183 (378)
T KOG2807|consen 122 LTGN-----PRIHIH----ALKGLTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPG---------DIY 183 (378)
T ss_pred hcCC-----HHHHHH----HHhcccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcc---------cHH
Confidence 0011 122222 233332 345444444555555555544332 3578888765555522 478
Q ss_pred HHHHHHHHccCCCeEEEEEecCC
Q 012303 276 KTVEAIVKASEYPLSIILVGVGD 298 (466)
Q Consensus 276 ~Ti~aIv~AS~~PLSIIiVGVGd 298 (466)
+||+.++.+ + |=+-+||+-.
T Consensus 184 ~tI~~lk~~-k--IRvsvIgLsa 203 (378)
T KOG2807|consen 184 ETIDKLKAY-K--IRVSVIGLSA 203 (378)
T ss_pred HHHHHHHhh-C--eEEEEEeech
Confidence 999999854 3 4445566654
No 169
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.92 E-value=85 Score=37.73 Aligned_cols=44 Identities=23% Similarity=0.531 Sum_probs=30.1
Q ss_pred CCCCCCCCccCCCCCccc-cccCc-----ccccchhcCC--CCccccccccC
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQ-----TCCGCGQDLD--LCPICRSFIQT 461 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~-----~Cc~C~~~l~--~CPiCR~~I~~ 461 (466)
.....|+-|-.......- .||.. +|.+|..... .||-|......
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTP 675 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCc
Confidence 344689999876422222 59853 6889988663 79999887654
No 170
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=23.59 E-value=32 Score=27.00 Aligned_cols=30 Identities=23% Similarity=0.595 Sum_probs=15.6
Q ss_pred CCCCCCCccCCCCCccc-----cccCcccccchhc
Q 012303 419 DNHVCPICLTDPKDMAF-----GCGHQTCCGCGQD 448 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~-----pCGH~~Cc~C~~~ 448 (466)
+...|.+|...+.-..- .||+.+|..|...
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 44689999988733321 8999999999863
No 171
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.14 E-value=19 Score=34.07 Aligned_cols=26 Identities=27% Similarity=0.678 Sum_probs=20.9
Q ss_pred cCcccccchhcC-CCCccccccccCcc
Q 012303 438 GHQTCCGCGQDL-DLCPICRSFIQTRI 463 (466)
Q Consensus 438 GH~~Cc~C~~~l-~~CPiCR~~I~~~i 463 (466)
.+.||-.|+... ..||.|..+|...-
T Consensus 27 ~~~fC~kCG~~tI~~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 27 REKFCSKCGAKTITSCPNCSTPIRGDY 53 (158)
T ss_pred HHHHHHHhhHHHHHHCcCCCCCCCCce
Confidence 456888999875 58999999998753
No 172
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=23.03 E-value=2e+02 Score=30.71 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=25.4
Q ss_pred HHHHHHHHHHccCCCeEEEEEecCCCCCCcccccCC
Q 012303 274 EKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDD 309 (466)
Q Consensus 274 ~~~Ti~aIv~AS~~PLSIIiVGVGd~~f~~M~~LDd 309 (466)
..+.++||..+.....=+||||=|+|..+.+--||+
T Consensus 178 ~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~ 213 (438)
T PRK00286 178 AASIVAAIERANARGEDVLIVARGGGSLEDLWAFND 213 (438)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCc
Confidence 456677777766655667777777777777777766
No 173
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.78 E-value=61 Score=21.62 Aligned_cols=20 Identities=35% Similarity=0.805 Sum_probs=10.9
Q ss_pred CCCCccCCCCCcc-c--cccCcc
Q 012303 422 VCPICLTDPKDMA-F--GCGHQT 441 (466)
Q Consensus 422 ~CpICl~~~kd~~-~--pCGH~~ 441 (466)
.||-|...-...+ + .|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 4677765443333 3 377764
No 174
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=21.31 E-value=77 Score=38.88 Aligned_cols=41 Identities=32% Similarity=0.783 Sum_probs=29.5
Q ss_pred CCCCCccCCCCCccc--cccCcc-----cccchhcC-------CCCccccccccCc
Q 012303 421 HVCPICLTDPKDMAF--GCGHQT-----CCGCGQDL-------DLCPICRSFIQTR 462 (466)
Q Consensus 421 ~~CpICl~~~kd~~~--pCGH~~-----Cc~C~~~l-------~~CPiCR~~I~~~ 462 (466)
..||-|-..-.. .+ .||+.+ |-.|+..+ ..||-|-.+....
T Consensus 668 rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 689999975433 35 599664 77998865 2799998876653
No 175
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=21.24 E-value=2e+02 Score=31.04 Aligned_cols=67 Identities=19% Similarity=0.385 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCceEEEEE--EeCCccccCCCcccCcCchhHHHHHHHHHHccCCC-eEEEEEecCCCCCCccccc
Q 012303 231 APIIEMAITIVEHSGGQYHVLVI--IADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYP-LSIILVGVGDGPWDMMREF 307 (466)
Q Consensus 231 apII~~a~~~v~~s~~~Y~VLlI--ITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~AS~~P-LSIIiVGVGd~~f~~M~~L 307 (466)
+-+|+.+++.++.......|.++ ..-|.-. ..+.++||..+...+ .=+||||=|.|..+.+--|
T Consensus 140 ~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a-------------~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~F 206 (432)
T TIGR00237 140 GAALADILHILKRRDPSLKVVIYPTLVQGEGA-------------VQSIVESIELANTKNECDVLIVGRGGGSLEDLWSF 206 (432)
T ss_pred cHHHHHHHHHHHhhCCCceEEEecccccCccH-------------HHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhc
Confidence 45677777777765322334332 2334432 577888888777655 7889999999999999888
Q ss_pred CCC
Q 012303 308 DDN 310 (466)
Q Consensus 308 Dd~ 310 (466)
|+.
T Consensus 207 n~e 209 (432)
T TIGR00237 207 NDE 209 (432)
T ss_pred CcH
Confidence 873
No 176
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.07 E-value=30 Score=31.85 Aligned_cols=23 Identities=35% Similarity=0.950 Sum_probs=17.1
Q ss_pred cccccchhc-CCCCccccccccCc
Q 012303 440 QTCCGCGQD-LDLCPICRSFIQTR 462 (466)
Q Consensus 440 ~~Cc~C~~~-l~~CPiCR~~I~~~ 462 (466)
.||..|+.. +..||+|..+|...
T Consensus 29 afcskcgeati~qcp~csasirgd 52 (160)
T COG4306 29 AFCSKCGEATITQCPICSASIRGD 52 (160)
T ss_pred HHHhhhchHHHhcCCccCCccccc
Confidence 456677764 45899999998764
No 177
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.94 E-value=4e+02 Score=27.05 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEe--CCccccCCCcccCcCchhHHHHHHHHHHccCCC----eEEEEEecCCCCCCccc
Q 012303 232 PIIEMAITIVEHSGGQYHVLVIIA--DGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYP----LSIILVGVGDGPWDMMR 305 (466)
Q Consensus 232 pII~~a~~~v~~s~~~Y~VLlIIT--DG~i~d~~d~~~~~~s~~~~~Ti~aIv~AS~~P----LSIIiVGVGd~~f~~M~ 305 (466)
-.++..++.+++......|.++=+ -|.-. ..+.++||..+...+ .=+||||=|+|.++.|-
T Consensus 26 Aa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A-------------~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~ 92 (319)
T PF02601_consen 26 AAIQDFLRTLKRRNPIVEIILYPASVQGEGA-------------AASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLW 92 (319)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccccch-------------HHHHHHHHHHHHhccccccccEEEEecCCCChHHhc
Confidence 456666666666544344444433 34433 678999999998765 99999999999999999
Q ss_pred ccCCC
Q 012303 306 EFDDN 310 (466)
Q Consensus 306 ~LDd~ 310 (466)
-||+.
T Consensus 93 ~FN~e 97 (319)
T PF02601_consen 93 AFNDE 97 (319)
T ss_pred ccChH
Confidence 99983
No 178
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.06 E-value=39 Score=36.52 Aligned_cols=30 Identities=30% Similarity=0.701 Sum_probs=24.6
Q ss_pred CCCCCCCccCCCCC-ccc-cccCcccccchhc
Q 012303 419 DNHVCPICLTDPKD-MAF-GCGHQTCCGCGQD 448 (466)
Q Consensus 419 e~~~CpICl~~~kd-~~~-pCGH~~Cc~C~~~ 448 (466)
....|-||++.... ++. .|||.+|..|...
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~ 100 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTG 100 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHH
Confidence 34589999999886 555 9999999999873
No 179
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=20.04 E-value=2.8e+02 Score=28.61 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=7.5
Q ss_pred ecCCCChHHHHHHHHHHHH
Q 012303 224 LAGPTSFAPIIEMAITIVE 242 (466)
Q Consensus 224 LsGPT~FapII~~a~~~v~ 242 (466)
+.|++.+....+++.+..+
T Consensus 28 v~~~~~~~~~~~~v~~~l~ 46 (349)
T cd08550 28 VGGKTVLKKSRPRFEAALA 46 (349)
T ss_pred EEChHHHHHHHHHHHHHHH
Confidence 3444444433333333333
Done!