Query 012303
Match_columns 466
No_of_seqs 333 out of 1584
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 06:46:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.3 4.7E-12 1.6E-16 100.2 5.4 50 417-466 12-63 (68)
2 2ecg_A Baculoviral IAP repeat- 99.1 3E-12 1E-16 102.3 -1.6 49 418-466 23-73 (75)
3 4ic3_A E3 ubiquitin-protein li 99.0 3.7E-11 1.3E-15 95.9 1.2 49 418-466 22-72 (74)
4 2yho_A E3 ubiquitin-protein li 99.0 3.8E-11 1.3E-15 97.5 1.2 48 419-466 17-66 (79)
5 2vje_B MDM4 protein; proto-onc 99.0 3.1E-11 1.1E-15 93.8 -1.1 48 419-466 6-61 (63)
6 2vje_A E3 ubiquitin-protein li 99.0 4.3E-11 1.5E-15 93.3 -1.4 49 418-466 6-62 (64)
7 2ysl_A Tripartite motif-contai 98.8 1.7E-09 5.7E-14 84.7 4.0 50 413-462 13-70 (73)
8 1e4u_A Transcriptional repress 98.8 3.2E-09 1.1E-13 86.2 4.0 50 416-465 7-66 (78)
9 3t6p_A Baculoviral IAP repeat- 98.8 1.9E-09 6.6E-14 109.8 3.3 49 418-466 293-343 (345)
10 2d8t_A Dactylidin, ring finger 98.7 4.7E-09 1.6E-13 82.3 3.5 45 417-461 12-61 (71)
11 2ea6_A Ring finger protein 4; 98.7 2.6E-09 8.8E-14 82.3 1.3 49 414-462 9-69 (69)
12 2ecw_A Tripartite motif-contai 98.7 1.8E-08 6.1E-13 80.3 5.4 48 414-461 13-71 (85)
13 2ecv_A Tripartite motif-contai 98.7 2.5E-08 8.6E-13 79.4 6.3 47 415-461 14-71 (85)
14 2ecn_A Ring finger protein 141 98.7 1E-08 3.4E-13 79.8 3.3 50 416-465 11-64 (70)
15 2egp_A Tripartite motif-contai 98.6 1.3E-08 4.5E-13 80.6 3.3 47 415-461 7-65 (79)
16 2ct2_A Tripartite motif protei 98.6 1.8E-08 6.2E-13 81.2 3.2 47 415-461 10-68 (88)
17 2csy_A Zinc finger protein 183 98.6 1.7E-08 5.8E-13 81.0 2.7 46 416-461 11-61 (81)
18 1bor_A Transcription factor PM 98.6 3.8E-08 1.3E-12 74.3 4.2 45 418-462 4-50 (56)
19 2djb_A Polycomb group ring fin 98.6 2.2E-08 7.5E-13 78.7 2.8 49 414-462 9-63 (72)
20 2ecy_A TNF receptor-associated 98.6 2.1E-08 7.2E-13 77.4 2.5 47 416-462 11-63 (66)
21 3l11_A E3 ubiquitin-protein li 98.5 1.3E-08 4.5E-13 86.8 0.9 49 413-461 8-62 (115)
22 2yur_A Retinoblastoma-binding 98.5 3.5E-08 1.2E-12 78.1 3.1 48 414-461 9-64 (74)
23 4ayc_A E3 ubiquitin-protein li 98.5 1.2E-08 4.1E-13 90.2 0.0 44 419-462 52-100 (138)
24 2ect_A Ring finger protein 126 98.5 5.3E-08 1.8E-12 77.3 3.5 48 415-462 10-65 (78)
25 1chc_A Equine herpes virus-1 r 98.5 3.7E-08 1.3E-12 76.1 2.3 48 418-465 3-56 (68)
26 2ysj_A Tripartite motif-contai 98.5 7.1E-08 2.4E-12 73.6 3.5 43 413-455 13-63 (63)
27 3ztg_A E3 ubiquitin-protein li 98.5 4E-08 1.4E-12 80.4 2.1 45 416-460 9-61 (92)
28 3ng2_A RNF4, snurf, ring finge 98.5 2.4E-08 8.3E-13 77.5 0.7 44 418-461 8-63 (71)
29 2ep4_A Ring finger protein 24; 98.5 8.3E-08 2.8E-12 75.4 3.5 50 415-464 10-67 (74)
30 2xeu_A Ring finger protein 4; 98.4 3E-08 1E-12 75.2 0.2 43 419-461 2-56 (64)
31 1iym_A EL5; ring-H2 finger, ub 98.4 1.6E-07 5.3E-12 69.5 3.6 43 418-460 3-54 (55)
32 1g25_A CDK-activating kinase a 98.4 4.4E-08 1.5E-12 75.4 0.6 43 419-461 2-55 (65)
33 4hqf_A Thrombospondin-related 98.4 2.2E-06 7.5E-11 83.1 12.6 151 124-309 21-179 (281)
34 2ecj_A Tripartite motif-contai 98.4 1.8E-07 6.2E-12 69.7 3.7 41 415-455 10-58 (58)
35 1t1h_A Gspef-atpub14, armadill 98.4 8.1E-08 2.8E-12 76.2 1.5 45 417-461 5-55 (78)
36 2ecm_A Ring finger and CHY zin 98.4 1.3E-07 4.5E-12 69.8 2.3 42 419-460 4-54 (55)
37 4hqo_A Sporozoite surface prot 98.3 1.5E-06 5E-11 84.0 10.1 141 125-300 19-166 (266)
38 3fl2_A E3 ubiquitin-protein li 98.3 4.7E-08 1.6E-12 84.6 -0.5 44 418-461 50-99 (124)
39 2kiz_A E3 ubiquitin-protein li 98.3 1.7E-07 5.9E-12 72.6 2.2 47 417-463 11-65 (69)
40 2y1n_A E3 ubiquitin-protein li 98.3 1.8E-07 6.2E-12 96.7 2.6 46 420-465 332-383 (389)
41 1wgm_A Ubiquitin conjugation f 98.3 3.6E-07 1.2E-11 77.0 3.9 48 415-462 17-70 (98)
42 1jm7_A BRCA1, breast cancer ty 98.3 1.9E-07 6.6E-12 78.5 2.2 43 419-461 20-70 (112)
43 1x4j_A Ring finger protein 38; 98.3 2.2E-07 7.4E-12 73.4 2.3 46 417-462 20-73 (75)
44 3lrq_A E3 ubiquitin-protein li 98.3 1.2E-07 4.1E-12 79.5 -0.0 45 417-461 19-70 (100)
45 1jm7_B BARD1, BRCA1-associated 98.2 4.6E-07 1.6E-11 77.7 3.4 45 417-461 19-67 (117)
46 2l0b_A E3 ubiquitin-protein li 98.2 1.7E-07 5.8E-12 77.2 0.3 46 417-462 37-90 (91)
47 2xgg_A Microneme protein 2; A/ 98.2 9.8E-06 3.4E-10 73.0 11.5 137 125-299 18-162 (178)
48 2ckl_A Polycomb group ring fin 98.2 2.6E-07 9E-12 78.0 0.7 45 417-461 12-62 (108)
49 2kre_A Ubiquitin conjugation f 98.2 1.3E-06 4.3E-11 73.9 4.3 46 416-461 25-75 (100)
50 1z6u_A NP95-like ring finger p 98.2 3.2E-07 1.1E-11 82.8 0.6 44 419-462 77-126 (150)
51 2y43_A E3 ubiquitin-protein li 98.1 2.2E-07 7.4E-12 77.2 -0.6 44 418-461 20-69 (99)
52 1shu_X Anthrax toxin receptor 98.1 4.2E-06 1.4E-10 74.5 7.8 147 125-309 7-155 (182)
53 3n2n_F Anthrax toxin receptor 98.1 1.2E-05 3.9E-10 71.9 10.6 147 125-309 8-158 (185)
54 3ibs_A Conserved hypothetical 98.1 6.6E-06 2.3E-10 75.5 9.1 139 125-299 12-150 (218)
55 3hct_A TNF receptor-associated 98.1 4.5E-07 1.5E-11 77.9 1.1 47 416-462 14-66 (118)
56 2kr4_A Ubiquitin conjugation f 98.1 7.8E-07 2.7E-11 72.8 2.4 46 417-462 11-61 (85)
57 2c2l_A CHIP, carboxy terminus 98.1 9.4E-07 3.2E-11 84.7 2.9 44 418-461 206-255 (281)
58 1v87_A Deltex protein 2; ring- 98.1 4.5E-07 1.6E-11 76.9 0.5 43 420-462 25-95 (114)
59 1q0p_A Complement factor B; VO 98.1 4.4E-06 1.5E-10 76.7 7.2 153 124-308 15-190 (223)
60 4fx5_A VON willebrand factor t 98.1 5.9E-06 2E-10 86.9 8.9 151 124-308 77-230 (464)
61 2ckl_B Ubiquitin ligase protei 98.1 6.1E-07 2.1E-11 81.2 0.7 45 417-461 51-102 (165)
62 1rmd_A RAG1; V(D)J recombinati 98.0 3.1E-07 1.1E-11 78.3 -2.2 45 417-461 20-70 (116)
63 3knv_A TNF receptor-associated 98.0 6.4E-07 2.2E-11 80.0 -1.3 43 417-459 28-76 (141)
64 4ap4_A E3 ubiquitin ligase RNF 97.9 1.1E-06 3.8E-11 75.2 -0.0 45 418-462 5-61 (133)
65 1n3y_A Integrin alpha-X; alpha 97.9 2.7E-06 9.1E-11 77.0 2.5 135 125-300 10-152 (198)
66 1atz_A VON willebrand factor; 97.9 2.3E-05 7.9E-10 70.9 8.6 141 125-307 6-155 (189)
67 1ijb_A VON willebrand factor; 97.9 2.2E-05 7.5E-10 72.3 8.0 144 125-307 14-166 (202)
68 2b2x_A Integrin alpha-1; compu 97.9 6.6E-05 2.3E-09 69.8 11.2 132 125-299 23-164 (223)
69 2odp_A Complement C2; C3/C5 co 97.9 1.6E-05 5.4E-10 82.7 7.4 154 124-309 9-185 (509)
70 1pt6_A Integrin alpha-1; cell 97.8 0.00014 4.7E-09 67.1 11.7 132 125-299 8-149 (213)
71 2x31_A Magnesium-chelatase 60 97.8 2.6E-06 8.8E-11 76.9 0.1 152 125-308 6-161 (189)
72 3hcs_A TNF receptor-associated 97.8 3.6E-06 1.2E-10 76.3 0.5 46 416-461 14-65 (170)
73 4b4t_W RPN10, 26S proteasome r 97.8 0.00012 4.1E-09 72.2 11.2 164 122-324 3-174 (268)
74 1rrk_A Complement factor B; BB 97.8 5.7E-05 1.9E-09 78.1 9.1 153 125-309 2-177 (497)
75 2yu4_A E3 SUMO-protein ligase 97.7 6.9E-06 2.3E-10 68.2 1.4 41 418-458 5-59 (94)
76 2ecl_A Ring-box protein 2; RNF 97.7 7.1E-06 2.4E-10 66.2 1.4 43 419-461 14-76 (81)
77 2x5n_A SPRPN10, 26S proteasome 97.7 0.00026 9.1E-09 65.8 12.2 163 126-327 4-173 (192)
78 1mf7_A Integrin alpha M; cell 97.7 1.5E-05 5E-10 72.3 3.4 134 125-299 6-147 (194)
79 4ap4_A E3 ubiquitin ligase RNF 97.7 4.3E-06 1.5E-10 71.5 -0.2 45 418-462 70-126 (133)
80 3hrz_D Complement factor B; se 97.7 0.00012 4.1E-09 79.4 10.5 150 124-309 243-419 (741)
81 2f42_A STIP1 homology and U-bo 97.7 7.9E-06 2.7E-10 76.3 0.7 45 418-462 104-154 (179)
82 1v7p_C Integrin alpha-2; snake 97.7 0.00038 1.3E-08 63.4 12.0 131 125-298 7-147 (200)
83 3htk_C E3 SUMO-protein ligase 97.5 2.8E-05 9.6E-10 76.6 1.4 45 417-461 178-232 (267)
84 3dpl_R Ring-box protein 1; ubi 97.3 5.4E-05 1.9E-09 64.7 1.7 42 419-460 36-100 (106)
85 3zqk_A VON willebrand factor; 97.3 0.00019 6.3E-09 65.9 4.4 138 125-309 22-169 (199)
86 1wim_A KIAA0161 protein; ring 97.3 4.7E-05 1.6E-09 62.7 0.3 40 419-458 4-61 (94)
87 4a0k_B E3 ubiquitin-protein li 97.1 7.7E-05 2.6E-09 65.1 0.3 41 420-460 48-111 (117)
88 1mjn_A Integrin alpha-L; rossm 97.0 0.0017 5.7E-08 58.5 8.2 137 125-307 3-150 (179)
89 1jey_A KU70; double-strand DNA 97.0 0.0049 1.7E-07 66.7 13.3 162 119-302 32-212 (609)
90 2d8s_A Cellular modulator of i 97.0 0.00052 1.8E-08 55.7 4.0 47 418-464 13-73 (80)
91 3k6s_A Integrin alpha-X; cell 96.9 0.00077 2.6E-08 77.8 5.7 142 125-309 131-287 (1095)
92 1jey_B KU80; double-strand DNA 96.5 0.0093 3.2E-07 63.9 10.2 149 120-299 4-170 (565)
93 1yvr_A RO autoantigen, 60-kDa 96.1 0.035 1.2E-06 59.0 12.1 138 125-301 369-506 (538)
94 2bay_A PRE-mRNA splicing facto 96.0 0.0013 4.4E-08 50.6 0.2 42 421-462 4-51 (61)
95 3vk6_A E3 ubiquitin-protein li 95.9 0.0019 6.5E-08 55.0 1.0 42 422-463 3-51 (101)
96 2nvo_A RO sixty-related protei 95.0 0.14 4.8E-06 54.6 11.8 139 125-300 363-501 (535)
97 3k1l_B Fancl; UBC, ring, RWD, 94.1 0.023 8E-07 58.1 3.1 46 418-463 306-375 (381)
98 2ct0_A Non-SMC element 1 homol 91.9 0.12 4.1E-06 41.4 3.6 46 418-463 13-66 (74)
99 1vyx_A ORF K3, K3RING; zinc-bi 90.1 0.09 3.1E-06 40.2 1.2 44 418-461 4-59 (60)
100 2ko5_A Ring finger protein Z; 90.0 0.14 4.8E-06 43.1 2.3 50 416-465 24-77 (99)
101 2iue_A Pactolus I-domain; memb 88.6 1.3 4.4E-05 42.0 8.2 109 125-262 4-119 (212)
102 2ww8_A RRGA, cell WALL surface 87.3 2.7 9.2E-05 47.7 11.1 125 125-262 225-393 (893)
103 2jun_A Midline-1; B-BOX, TRIM, 82.2 0.44 1.5E-05 38.9 1.3 30 419-448 2-35 (101)
104 2cs3_A Protein C14ORF4, MY039 69.9 2.2 7.4E-05 35.1 2.2 30 418-447 13-47 (93)
105 3rag_A Uncharacterized protein 63.7 4.2 0.00014 39.4 3.2 42 247-300 9-50 (242)
106 3fcs_B Integrin beta-3; beta p 62.3 8 0.00027 42.6 5.5 50 212-261 200-256 (690)
107 3rag_A Uncharacterized protein 54.2 15 0.00051 35.5 5.3 90 125-244 135-228 (242)
108 2a20_A Regulating synaptic mem 51.7 3.3 0.00011 32.1 0.1 40 417-458 6-60 (62)
109 3i2d_A E3 SUMO-protein ligase 42.7 12 0.00042 38.3 2.8 40 421-460 250-299 (371)
110 4fo9_A E3 SUMO-protein ligase 39.1 15 0.00051 37.5 2.7 41 420-460 215-265 (360)
111 3nw0_A Non-structural maintena 38.1 13 0.00043 35.6 1.9 42 420-461 180-229 (238)
112 3zyq_A Hepatocyte growth facto 37.1 13 0.00043 35.2 1.7 44 419-462 163-223 (226)
113 2d8v_A Zinc finger FYVE domain 36.2 16 0.00056 28.7 1.9 30 418-447 6-36 (67)
114 3k6s_B Integrin beta-2; cell r 33.8 27 0.00093 38.4 3.9 47 213-260 193-246 (687)
115 1dvp_A HRS, hepatocyte growth 33.2 29 0.00098 32.3 3.5 30 419-448 160-194 (220)
116 3m0m_A L-rhamnose isomerase; b 29.1 72 0.0024 33.2 6.0 112 178-299 52-183 (438)
117 1weo_A Cellulose synthase, cat 28.9 22 0.00077 29.5 1.7 42 419-460 15-69 (93)
118 1wfk_A Zinc finger, FYVE domai 28.8 32 0.0011 27.8 2.6 31 418-448 7-42 (88)
119 2zet_C Melanophilin; complex, 27.8 12 0.00041 33.7 -0.1 39 420-458 68-117 (153)
120 1z60_A TFIIH basal transcripti 26.2 22 0.00075 27.2 1.1 35 421-455 16-58 (59)
121 3t3p_B Integrin beta-3; integr 25.6 36 0.0012 35.9 3.0 49 213-261 201-256 (472)
122 1z2q_A LM5-1; membrane protein 25.6 90 0.0031 24.7 4.7 30 419-448 20-54 (84)
123 1vfy_A Phosphatidylinositol-3- 25.3 39 0.0013 26.2 2.4 27 421-447 12-43 (73)
124 2yw8_A RUN and FYVE domain-con 24.6 44 0.0015 26.4 2.7 43 419-461 18-75 (82)
125 1wfp_A Zinc finger (AN1-like) 22.9 1.3E+02 0.0043 24.1 5.0 28 416-443 21-50 (74)
126 1x4u_A Zinc finger, FYVE domai 22.5 77 0.0026 25.1 3.8 29 419-447 13-46 (84)
127 1joc_A EEA1, early endosomal a 22.0 37 0.0013 29.2 1.9 28 421-448 70-102 (125)
128 1zbd_B Rabphilin-3A; G protein 21.9 19 0.00065 31.6 0.0 38 421-458 56-107 (134)
129 2fiy_A Protein FDHE homolog; F 21.8 20 0.00068 35.7 0.1 41 418-458 180-231 (309)
130 3mpx_A FYVE, rhogef and PH dom 20.8 21 0.00071 36.0 0.0 41 420-460 375-431 (434)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.7e-12 Score=100.23 Aligned_cols=50 Identities=28% Similarity=0.772 Sum_probs=46.0
Q ss_pred CCCCCCCCCccCCCCCccc-cccCc-ccccchhcCCCCccccccccCccccC
Q 012303 417 TSDNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 466 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~-pCGH~-~Cc~C~~~l~~CPiCR~~I~~~i~ly 466 (466)
..+..+|+||+++++++++ ||||. +|..|+.++..||+||++|..+++||
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEee
Confidence 3456799999999999998 99999 77799999999999999999999987
No 2
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3e-12 Score=102.32 Aligned_cols=49 Identities=33% Similarity=0.931 Sum_probs=45.2
Q ss_pred CCCCCCCCccCCCCCccc-cccCc-ccccchhcCCCCccccccccCccccC
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 466 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~-~Cc~C~~~l~~CPiCR~~I~~~i~ly 466 (466)
.+..+|+||++..+++++ +|||. +|..|+.++..||+||.+|..++++|
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence 344689999999999998 99999 88899999999999999999999987
No 3
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.03 E-value=3.7e-11 Score=95.92 Aligned_cols=49 Identities=33% Similarity=0.896 Sum_probs=45.3
Q ss_pred CCCCCCCCccCCCCCccc-cccCc-ccccchhcCCCCccccccccCccccC
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 466 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~-~Cc~C~~~l~~CPiCR~~I~~~i~ly 466 (466)
.++..|+||++..+++++ +|||. +|..|+.++..||+||.+|..++++|
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence 345799999999999998 99999 88899999999999999999999987
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.03 E-value=3.8e-11 Score=97.54 Aligned_cols=48 Identities=31% Similarity=0.889 Sum_probs=44.2
Q ss_pred CCCCCCCccCCCCCccc-cccCc-ccccchhcCCCCccccccccCccccC
Q 012303 419 DNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 466 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~-pCGH~-~Cc~C~~~l~~CPiCR~~I~~~i~ly 466 (466)
+...|+||++..+++++ ||||. +|..|+.++..||+||++|..++++|
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence 44689999999999998 99999 67799999999999999999999886
No 5
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.98 E-value=3.1e-11 Score=93.81 Aligned_cols=48 Identities=38% Similarity=0.799 Sum_probs=42.4
Q ss_pred CCCCCCCccCCCCCccc---cccCc-ccccchhcCC----CCccccccccCccccC
Q 012303 419 DNHVCPICLTDPKDMAF---GCGHQ-TCCGCGQDLD----LCPICRSFIQTRIKLY 466 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~---pCGH~-~Cc~C~~~l~----~CPiCR~~I~~~i~ly 466 (466)
...+|+||+++++++++ ||||. +|.+|+.++. .||+||++|...+++|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 34689999999999864 99999 6779999886 8999999999999987
No 6
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.95 E-value=4.3e-11 Score=93.34 Aligned_cols=49 Identities=35% Similarity=0.758 Sum_probs=42.7
Q ss_pred CCCCCCCCccCCCCCccc---cccCc-ccccchhcCC----CCccccccccCccccC
Q 012303 418 SDNHVCPICLTDPKDMAF---GCGHQ-TCCGCGQDLD----LCPICRSFIQTRIKLY 466 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~---pCGH~-~Cc~C~~~l~----~CPiCR~~I~~~i~ly 466 (466)
.++.+|+||+++++++++ ||||. +|.+|+.++. .||+||++|...+++|
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 355699999999999984 99999 5679999775 5999999999999987
No 7
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.7e-09 Score=84.69 Aligned_cols=50 Identities=26% Similarity=0.740 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCCccCCCCCccc-cccCcccccchhcCC-------CCccccccccCc
Q 012303 413 PASSTSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDLD-------LCPICRSFIQTR 462 (466)
Q Consensus 413 ~~~~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l~-------~CPiCR~~I~~~ 462 (466)
......+...|+||++..+++++ +|||.||..|+..+. .||+||.++...
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 34456677899999999999887 999999999998643 699999998753
No 8
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.78 E-value=3.2e-09 Score=86.20 Aligned_cols=50 Identities=32% Similarity=0.750 Sum_probs=40.2
Q ss_pred CCCCCCCCCCccCCC--CCccc-c--ccCcccccchhcCC-----CCccccccccCcccc
Q 012303 416 STSDNHVCPICLTDP--KDMAF-G--CGHQTCCGCGQDLD-----LCPICRSFIQTRIKL 465 (466)
Q Consensus 416 ~~~e~~~CpICl~~~--kd~~~-p--CGH~~Cc~C~~~l~-----~CPiCR~~I~~~i~l 465 (466)
..+++..|+||++.. .++++ + |||.+|..|..++. .||+||.++..+..+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 356778999999977 45566 5 99999999998763 799999999876543
No 9
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.78 E-value=1.9e-09 Score=109.83 Aligned_cols=49 Identities=31% Similarity=0.937 Sum_probs=46.0
Q ss_pred CCCCCCCCccCCCCCccc-cccCc-ccccchhcCCCCccccccccCccccC
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 466 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~-~Cc~C~~~l~~CPiCR~~I~~~i~ly 466 (466)
.++..|+||++..+++++ ||||. +|..|+.++..||+||.+|+.++++|
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence 456799999999999998 99999 88899999999999999999999987
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=4.7e-09 Score=82.34 Aligned_cols=45 Identities=27% Similarity=0.530 Sum_probs=39.3
Q ss_pred CCCCCCCCCccCCCCCccc-cccCcccccchhcC----CCCccccccccC
Q 012303 417 TSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
..+...|+||++..+++++ +|||.||..|+..+ ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3556799999999999987 99999999999875 379999999875
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=2.6e-09 Score=82.29 Aligned_cols=49 Identities=33% Similarity=0.789 Sum_probs=39.7
Q ss_pred CCCCCCCCCCCCccCCCCCc-------cc-cccCcccccchhcC----CCCccccccccCc
Q 012303 414 ASSTSDNHVCPICLTDPKDM-------AF-GCGHQTCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 414 ~~~~~e~~~CpICl~~~kd~-------~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
+....+...|+||++...++ ++ +|||.||..|+..+ ..||+||.++..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~r 69 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCcC
Confidence 34456778999999988775 44 99999999999865 4899999998753
No 12
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.68 E-value=1.8e-08 Score=80.30 Aligned_cols=48 Identities=29% Similarity=0.598 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCccCCCCCccc-cccCcccccchhc----------CCCCccccccccC
Q 012303 414 ASSTSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQD----------LDLCPICRSFIQT 461 (466)
Q Consensus 414 ~~~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~----------l~~CPiCR~~I~~ 461 (466)
.....+...|+||++..+++++ +|||.||..|+.. ...||+||.++..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3445677899999999999987 9999999999975 4579999999875
No 13
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=2.5e-08 Score=79.41 Aligned_cols=47 Identities=32% Similarity=0.699 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCccCCCCCccc-cccCcccccchhc----------CCCCccccccccC
Q 012303 415 SSTSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQD----------LDLCPICRSFIQT 461 (466)
Q Consensus 415 ~~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~----------l~~CPiCR~~I~~ 461 (466)
....+...|+||++..++++. +|||.||..|... ...||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 445677899999999999887 9999999999975 3589999999875
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1e-08 Score=79.83 Aligned_cols=50 Identities=28% Similarity=0.648 Sum_probs=41.1
Q ss_pred CCCCCCCCCCccCCCCCccccccCcccccchhcC----CCCccccccccCcccc
Q 012303 416 STSDNHVCPICLTDPKDMAFGCGHQTCCGCGQDL----DLCPICRSFIQTRIKL 465 (466)
Q Consensus 416 ~~~e~~~CpICl~~~kd~~~pCGH~~Cc~C~~~l----~~CPiCR~~I~~~i~l 465 (466)
...+...|+||++...+..++|||.||..|+.++ ..||+||.++.....+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 11 QLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred cCCCCCCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 3456679999999999933499999999999875 4799999999876554
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.63 E-value=1.3e-08 Score=80.56 Aligned_cols=47 Identities=28% Similarity=0.641 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCccCCCCCccc-cccCcccccchhc-----------CCCCccccccccC
Q 012303 415 SSTSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQD-----------LDLCPICRSFIQT 461 (466)
Q Consensus 415 ~~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~-----------l~~CPiCR~~I~~ 461 (466)
....+...|+||++...+++. +|||.||..|+.. ...||+||.++..
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345677899999999999887 9999999999985 2379999999875
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.8e-08 Score=81.20 Aligned_cols=47 Identities=28% Similarity=0.739 Sum_probs=39.4
Q ss_pred CCCCCCCCCCCccCCCCC----ccc-cccCcccccchhcC-------CCCccccccccC
Q 012303 415 SSTSDNHVCPICLTDPKD----MAF-GCGHQTCCGCGQDL-------DLCPICRSFIQT 461 (466)
Q Consensus 415 ~~~~e~~~CpICl~~~kd----~~~-pCGH~~Cc~C~~~l-------~~CPiCR~~I~~ 461 (466)
....+..+|+||++...+ +++ +|||.||..|+..+ ..||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 445677899999999888 765 99999999999864 479999998764
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=1.7e-08 Score=80.95 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=39.3
Q ss_pred CCCCCCCCCCccCCCCCccc-cccCcccccchhcC----CCCccccccccC
Q 012303 416 STSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 416 ~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
...+...|+||++..+++++ +|||.||..|+..+ ..||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 34556799999999999987 99999999999765 479999999864
No 18
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=3.8e-08 Score=74.28 Aligned_cols=45 Identities=27% Similarity=0.538 Sum_probs=39.0
Q ss_pred CCCCCCCCccCCCCCccc-cccCcccccchhcC-CCCccccccccCc
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-DLCPICRSFIQTR 462 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-~~CPiCR~~I~~~ 462 (466)
.+...|+||++..+++++ +|||.||..|+... ..||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEeecC
Confidence 456789999999999987 99999999999865 4899999998753
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.2e-08 Score=78.69 Aligned_cols=49 Identities=24% Similarity=0.512 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCccCCCCCcc-c-cccCcccccchhcC----CCCccccccccCc
Q 012303 414 ASSTSDNHVCPICLTDPKDMA-F-GCGHQTCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 414 ~~~~~e~~~CpICl~~~kd~~-~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
.....+...|+||++..++++ + +|||.||..|+..+ ..||+||.++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 344567789999999999987 4 99999999999754 4899999998764
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2.1e-08 Score=77.37 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=40.0
Q ss_pred CCCCCCCCCCccCCCCCccc-cccCcccccchhcC-----CCCccccccccCc
Q 012303 416 STSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-----DLCPICRSFIQTR 462 (466)
Q Consensus 416 ~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-----~~CPiCR~~I~~~ 462 (466)
...+...|+||++..++++. +|||.+|..|+.++ ..||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34566799999999999987 99999999999854 3799999998764
No 21
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.54 E-value=1.3e-08 Score=86.79 Aligned_cols=49 Identities=27% Similarity=0.548 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCCccCCCCCccc-cccCcccccchhcCC-----CCccccccccC
Q 012303 413 PASSTSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDLD-----LCPICRSFIQT 461 (466)
Q Consensus 413 ~~~~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l~-----~CPiCR~~I~~ 461 (466)
......++..|+||++...+++. +|||.||..|+..+. .||+||.++..
T Consensus 8 ~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 8 DAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp TCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 33445566799999999999987 999999999998652 79999999864
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.52 E-value=3.5e-08 Score=78.11 Aligned_cols=48 Identities=25% Similarity=0.559 Sum_probs=39.9
Q ss_pred CCCCCCCCCCCCccCCCCCccc-c-ccCcccccchhcC------CCCccccccccC
Q 012303 414 ASSTSDNHVCPICLTDPKDMAF-G-CGHQTCCGCGQDL------DLCPICRSFIQT 461 (466)
Q Consensus 414 ~~~~~e~~~CpICl~~~kd~~~-p-CGH~~Cc~C~~~l------~~CPiCR~~I~~ 461 (466)
.....+...|+||++..++++. + |||.||..|+..+ ..||+||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3445677899999999999987 8 9999999999754 379999998654
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.51 E-value=1.2e-08 Score=90.24 Aligned_cols=44 Identities=30% Similarity=0.643 Sum_probs=38.2
Q ss_pred CCCCCCCccCCCCCccc-cccCcccccchhcC----CCCccccccccCc
Q 012303 419 DNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
++..|+||++...++++ +|||.||..|+..+ ..||+||.++..+
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34589999999999997 99999999999864 3799999998764
No 24
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.50 E-value=5.3e-08 Score=77.28 Aligned_cols=48 Identities=25% Similarity=0.543 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCccCCCCCc---c-ccccCcccccchhcC----CCCccccccccCc
Q 012303 415 SSTSDNHVCPICLTDPKDM---A-FGCGHQTCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 415 ~~~~e~~~CpICl~~~kd~---~-~pCGH~~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
....+..+|+||++...+. . ++|||.||..|+.++ ..||+||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3445667999998876543 2 399999999999854 4799999998764
No 25
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.49 E-value=3.7e-08 Score=76.06 Aligned_cols=48 Identities=29% Similarity=0.732 Sum_probs=39.4
Q ss_pred CCCCCCCCccCCCCCc-cc-cccCcccccchhcC----CCCccccccccCcccc
Q 012303 418 SDNHVCPICLTDPKDM-AF-GCGHQTCCGCGQDL----DLCPICRSFIQTRIKL 465 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~-~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~~i~l 465 (466)
.+...|+||++...++ ++ +|||.||..|+.++ ..||+||.++...++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhhc
Confidence 3456899999999986 44 99999999999754 4799999999876543
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=7.1e-08 Score=73.61 Aligned_cols=43 Identities=30% Similarity=0.775 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCCCccCCCCCccc-cccCcccccchhcC-------CCCccc
Q 012303 413 PASSTSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-------DLCPIC 455 (466)
Q Consensus 413 ~~~~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-------~~CPiC 455 (466)
......+...|+||++..++++. +|||.||..|+.++ ..||+|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34456777899999999999987 99999999999754 269998
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.47 E-value=4e-08 Score=80.38 Aligned_cols=45 Identities=27% Similarity=0.583 Sum_probs=38.8
Q ss_pred CCCCCCCCCCccCCCCCccc-c-ccCcccccchhcC------CCCcccccccc
Q 012303 416 STSDNHVCPICLTDPKDMAF-G-CGHQTCCGCGQDL------DLCPICRSFIQ 460 (466)
Q Consensus 416 ~~~e~~~CpICl~~~kd~~~-p-CGH~~Cc~C~~~l------~~CPiCR~~I~ 460 (466)
...+...|+||++...+++. + |||.||..|+... ..||+||.++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45677899999999999987 8 9999999999754 37999999973
No 28
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.47 E-value=2.4e-08 Score=77.45 Aligned_cols=44 Identities=36% Similarity=0.871 Sum_probs=36.9
Q ss_pred CCCCCCCCccCCCCCc-------cc-cccCcccccchhcC----CCCccccccccC
Q 012303 418 SDNHVCPICLTDPKDM-------AF-GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~-------~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
.++.+|+||++...++ ++ +|||.||..|+..+ ..||+||.++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4567999999988775 44 99999999999754 489999999875
No 29
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=8.3e-08 Score=75.37 Aligned_cols=50 Identities=22% Similarity=0.505 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCccCCCCCcc---c-cccCcccccchhcC----CCCccccccccCccc
Q 012303 415 SSTSDNHVCPICLTDPKDMA---F-GCGHQTCCGCGQDL----DLCPICRSFIQTRIK 464 (466)
Q Consensus 415 ~~~~e~~~CpICl~~~kd~~---~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~~i~ 464 (466)
....++..|+||++...+.. . +|||.||..|+..+ ..||+||.++....+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 34556679999999875442 2 99999999999864 479999999987554
No 30
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.42 E-value=3e-08 Score=75.15 Aligned_cols=43 Identities=35% Similarity=0.850 Sum_probs=36.1
Q ss_pred CCCCCCCccCCCCCc-------cc-cccCcccccchhcC----CCCccccccccC
Q 012303 419 DNHVCPICLTDPKDM-------AF-GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 419 e~~~CpICl~~~kd~-------~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
++.+|+||++...++ ++ +|||.+|..|+.++ ..||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 456899999987765 44 99999999999754 489999999885
No 31
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.40 E-value=1.6e-07 Score=69.54 Aligned_cols=43 Identities=30% Similarity=0.755 Sum_probs=35.0
Q ss_pred CCCCCCCCccCCCCC---cc-cc-ccCcccccchhcC----CCCcccccccc
Q 012303 418 SDNHVCPICLTDPKD---MA-FG-CGHQTCCGCGQDL----DLCPICRSFIQ 460 (466)
Q Consensus 418 ~e~~~CpICl~~~kd---~~-~p-CGH~~Cc~C~~~l----~~CPiCR~~I~ 460 (466)
.++.+|+||++...+ .+ ++ |||.||..|+..+ ..||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456799999998776 44 45 9999999999865 37999999864
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.40 E-value=4.4e-08 Score=75.37 Aligned_cols=43 Identities=33% Similarity=0.722 Sum_probs=34.8
Q ss_pred CCCCCCCccC-CCCCc----c-ccccCcccccchhcC-----CCCccccccccC
Q 012303 419 DNHVCPICLT-DPKDM----A-FGCGHQTCCGCGQDL-----DLCPICRSFIQT 461 (466)
Q Consensus 419 e~~~CpICl~-~~kd~----~-~pCGH~~Cc~C~~~l-----~~CPiCR~~I~~ 461 (466)
++..|+||++ ...++ + ++|||.+|..|+.++ ..||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4568999999 55555 3 399999999999866 379999999875
No 33
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.39 E-value=2.2e-06 Score=83.06 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=103.0
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHH-HHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccC
Q 012303 124 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPY-EQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFY 199 (466)
Q Consensus 124 ~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Y-e~AI~~Ig~vL~~yD~---D~~ip~fGFGa~~~~~~~vF~f~ 199 (466)
.+++++.||-|+|++. ..+ +++...+..++..++. +-.|-++.|+.... .+|.|+
T Consensus 21 ~~div~vlD~SgSM~~------------------~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~---~~~~l~ 79 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRR------------------HNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAR---EIIRLH 79 (281)
T ss_dssp CEEEEEEEECCCCSST------------------HHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEE---EEEEEC
T ss_pred ceeEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCce---EEEEcc
Confidence 4789999999999952 234 5666666666666665 56799999987642 345554
Q ss_pred CCCCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCC---ceEEEEEEeCCccccCCCcccCcCchhHHH
Q 012303 200 PDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG---QYHVLVIIADGQVTRSVDTEHGQLSSQEKK 276 (466)
Q Consensus 200 ~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~---~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~ 276 (466)
.... ...+.++++-.++.......|-|+....|+.|.+.....+. .-.++|+||||..+| ...
T Consensus 80 ~~~~--~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d------------~~~ 145 (281)
T 4hqf_A 80 SDAS--KNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS------------IQD 145 (281)
T ss_dssp SSCS--SCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC------------HHH
T ss_pred ccCc--cCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC------------cHH
Confidence 3321 13455555444433234567899999999999887765432 467899999999875 345
Q ss_pred HHHHHHHccCCCeEEEEEecCCC-CCCcccccCC
Q 012303 277 TVEAIVKASEYPLSIILVGVGDG-PWDMMREFDD 309 (466)
Q Consensus 277 Ti~aIv~AS~~PLSIIiVGVGd~-~f~~M~~LDd 309 (466)
..+++..+-+.-+-|..||||+. +-+.|+.+-+
T Consensus 146 ~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA~ 179 (281)
T 4hqf_A 146 SLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVG 179 (281)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhhC
Confidence 56666666677899999999985 4445555543
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.8e-07 Score=69.67 Aligned_cols=41 Identities=29% Similarity=0.732 Sum_probs=34.8
Q ss_pred CCCCCCCCCCCccCCCCCccc-cccCcccccchhcC-------CCCccc
Q 012303 415 SSTSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-------DLCPIC 455 (466)
Q Consensus 415 ~~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-------~~CPiC 455 (466)
....+...|+||++..+++++ +|||.||..|+..+ ..||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345667899999999999987 99999999999765 379998
No 35
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.37 E-value=8.1e-08 Score=76.17 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=39.0
Q ss_pred CCCCCCCCCccCCCCCccc-cccCcccccchhcC-----CCCccccccccC
Q 012303 417 TSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-----DLCPICRSFIQT 461 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-----~~CPiCR~~I~~ 461 (466)
..+...|+||++..++++. +|||.||..|+.+. ..||+||.++..
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4567899999999999997 99999999999753 379999999864
No 36
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.36 E-value=1.3e-07 Score=69.82 Aligned_cols=42 Identities=31% Similarity=0.716 Sum_probs=34.7
Q ss_pred CCCCCCCccCCCCC----ccc-cccCcccccchhcC----CCCcccccccc
Q 012303 419 DNHVCPICLTDPKD----MAF-GCGHQTCCGCGQDL----DLCPICRSFIQ 460 (466)
Q Consensus 419 e~~~CpICl~~~kd----~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~ 460 (466)
++.+|+||++...+ +++ +|||.||..|+..+ ..||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45689999998755 444 99999999999865 58999999875
No 37
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.35 E-value=1.5e-06 Score=84.03 Aligned_cols=141 Identities=16% Similarity=0.262 Sum_probs=99.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHH-HHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPY-EQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYP 200 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Y-e~AI~~Ig~vL~~yD---~D~~ip~fGFGa~~~~~~~vF~f~~ 200 (466)
+++++.||-|+|++. ..+ +++...+-.++..|+ ++-.|-++.|+.... .+|.|+.
T Consensus 19 ~DivfvlD~SgSM~~------------------~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~---~~~~l~~ 77 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGY------------------PNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTT---ELIRLGS 77 (266)
T ss_dssp EEEEEEEECSTTTCH------------------HHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEE---EEECTTS
T ss_pred eeEEEEEECCCCcCh------------------hHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcc---eEEecCC
Confidence 689999999999852 344 466677777777777 566899999998642 2345533
Q ss_pred CCCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc---CCceEEEEEEeCCccccCCCcccCcCchhHHHH
Q 012303 201 DEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS---GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 277 (466)
Q Consensus 201 ~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s---~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~T 277 (466)
.. -...+.++++-.++-......|-|+....|+.|.+..... .+.-.++|+||||..+| ....
T Consensus 78 ~~--~~~~~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d------------~~~~ 143 (266)
T 4hqo_A 78 GQ--SIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS------------KYRA 143 (266)
T ss_dssp HH--HHCHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC------------HHHH
T ss_pred CC--ccCHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC------------chHH
Confidence 21 1124555554444322224678999999999998887664 23468999999999875 4556
Q ss_pred HHHHHHccCCCeEEEEEecCCCC
Q 012303 278 VEAIVKASEYPLSIILVGVGDGP 300 (466)
Q Consensus 278 i~aIv~AS~~PLSIIiVGVGd~~ 300 (466)
.+++..+-+..+.|..||||+..
T Consensus 144 ~~~a~~l~~~gi~i~~iGiG~~~ 166 (266)
T 4hqo_A 144 LEVANKLKQRNVRLAVIGIGQGI 166 (266)
T ss_dssp HHHHHHHHHTTCEEEEEECSSSC
T ss_pred HHHHHHHHHCCCEEEEEecCccc
Confidence 66777777778999999999853
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.34 E-value=4.7e-08 Score=84.56 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=38.2
Q ss_pred CCCCCCCCccCCCCCccc-cccCcccccchhcC-----CCCccccccccC
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-----DLCPICRSFIQT 461 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-----~~CPiCR~~I~~ 461 (466)
.+...|+||++...+++. +|||.||..|+... ..||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 355789999999999987 99999999999743 389999999976
No 39
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.31 E-value=1.7e-07 Score=72.57 Aligned_cols=47 Identities=30% Similarity=0.596 Sum_probs=36.8
Q ss_pred CCCCCCCCCccCCCC---Cccc-cccCcccccchhcC----CCCccccccccCcc
Q 012303 417 TSDNHVCPICLTDPK---DMAF-GCGHQTCCGCGQDL----DLCPICRSFIQTRI 463 (466)
Q Consensus 417 ~~e~~~CpICl~~~k---d~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~~i 463 (466)
..+...|+||++... .++. +|||.||..|+..+ ..||+||.++...+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 345579999987653 3343 99999999999854 47999999998754
No 40
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.30 E-value=1.8e-07 Score=96.69 Aligned_cols=46 Identities=33% Similarity=0.755 Sum_probs=39.7
Q ss_pred CCCCCCccCCCCCccc-cccCcccccchhc-----CCCCccccccccCcccc
Q 012303 420 NHVCPICLTDPKDMAF-GCGHQTCCGCGQD-----LDLCPICRSFIQTRIKL 465 (466)
Q Consensus 420 ~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~-----l~~CPiCR~~I~~~i~l 465 (466)
..+|+||++..+++++ +|||.+|..|+.. ...||+||+++.....+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 4699999999999997 9999999999974 35899999999876544
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.30 E-value=3.6e-07 Score=77.01 Aligned_cols=48 Identities=17% Similarity=0.027 Sum_probs=41.1
Q ss_pred CCCCCCCCCCCccCCCCCccc-ccc-CcccccchhcC----CCCccccccccCc
Q 012303 415 SSTSDNHVCPICLTDPKDMAF-GCG-HQTCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 415 ~~~~e~~~CpICl~~~kd~~~-pCG-H~~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
....++..||||++..+|+|. +|| |.||+.|+.+. ..||+||++++..
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 345677899999999999998 999 99999999764 3799999998753
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.29 E-value=1.9e-07 Score=78.52 Aligned_cols=43 Identities=35% Similarity=0.689 Sum_probs=37.2
Q ss_pred CCCCCCCccCCCCCccc-cccCcccccchhcC-------CCCccccccccC
Q 012303 419 DNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-------DLCPICRSFIQT 461 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-------~~CPiCR~~I~~ 461 (466)
+...|+||++..++++. +|||.||..|+..+ ..||+||.++..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 44689999999999987 99999999999754 269999999875
No 43
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=2.2e-07 Score=73.40 Aligned_cols=46 Identities=26% Similarity=0.654 Sum_probs=36.6
Q ss_pred CCCCCCCCCccCCCCCc---c-ccccCcccccchhcC----CCCccccccccCc
Q 012303 417 TSDNHVCPICLTDPKDM---A-FGCGHQTCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~---~-~pCGH~~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
..+..+|+||++...+. . ++|||.||..|+..+ ..||+||+++...
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34567999999876654 3 399999999999864 4799999988753
No 44
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.25 E-value=1.2e-07 Score=79.47 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=38.5
Q ss_pred CCCCCCCCCccCCCCCccc--cccCcccccchhcC-----CCCccccccccC
Q 012303 417 TSDNHVCPICLTDPKDMAF--GCGHQTCCGCGQDL-----DLCPICRSFIQT 461 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l-----~~CPiCR~~I~~ 461 (466)
..+...|+||++..++++. +|||.||..|+..+ ..||+||.++..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3456799999999999875 99999999999854 479999999864
No 45
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.24 E-value=4.6e-07 Score=77.73 Aligned_cols=45 Identities=24% Similarity=0.540 Sum_probs=39.1
Q ss_pred CCCCCCCCCccCCCCCccc--cccCcccccchhcC--CCCccccccccC
Q 012303 417 TSDNHVCPICLTDPKDMAF--GCGHQTCCGCGQDL--DLCPICRSFIQT 461 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l--~~CPiCR~~I~~ 461 (466)
..+...|+||++..++++. +|||.||..|+..+ ..||+||.++..
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 3567899999999999984 89999999999877 479999999854
No 46
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.22 E-value=1.7e-07 Score=77.22 Aligned_cols=46 Identities=24% Similarity=0.605 Sum_probs=36.6
Q ss_pred CCCCCCCCCccCCCCC---cc-ccccCcccccchhcC----CCCccccccccCc
Q 012303 417 TSDNHVCPICLTDPKD---MA-FGCGHQTCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd---~~-~pCGH~~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
..++..|+||++...+ .. ++|||.||..|+..+ ..||+||.++...
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 3456789999987665 44 399999999999864 3799999998764
No 47
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.20 E-value=9.8e-06 Score=73.03 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=91.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~---D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
.++++.||-|+|++. ..++++...+..++..|+. .-.+-++.|+.... .+|+|+..
T Consensus 18 ~divfvlD~SgSm~~------------------~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~---~~~~l~~~ 76 (178)
T 2xgg_A 18 LDICFLIDSSGSIGI------------------QNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH---LQWDLQSP 76 (178)
T ss_dssp EEEEEEEECCTTTCH------------------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTSG
T ss_pred eeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceE---EEEeCCCC
Confidence 689999999999841 3567777778888888863 35899999998643 23455321
Q ss_pred CCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccCCCcccCcCchhHHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 276 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s-----~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~ 276 (466)
. ....+.++++-.++ +. ..|.|+....|+.|.+..... ...-.++|+||||..++ ...
T Consensus 77 ~--~~~~~~~~~~i~~l-~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~------------~~~ 139 (178)
T 2xgg_A 77 N--AVDKQLAAHAVLDM-PY--KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS------------DFR 139 (178)
T ss_dssp G--GSCHHHHHHHHHHC-CC--CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH------------HHH
T ss_pred C--ccCHHHHHHHHHhC-CC--CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC------------Ccc
Confidence 1 11445554443332 21 568999999999999875321 12457899999999875 122
Q ss_pred HHHHHHHccCCCeEEEEEecCCC
Q 012303 277 TVEAIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 277 Ti~aIv~AS~~PLSIIiVGVGd~ 299 (466)
..+++..+-+..+-|..||||+.
T Consensus 140 ~~~~~~~l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 140 TVRAAKEIRELGGIVTVLAVGHY 162 (178)
T ss_dssp HSHHHHHHHHTTCEEEEEECC--
T ss_pred HHHHHHHHHHCCCEEEEEEcCCc
Confidence 33444444456889999999974
No 48
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.19 E-value=2.6e-07 Score=77.96 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=38.9
Q ss_pred CCCCCCCCCccCCCCCccc--cccCcccccchhcC----CCCccccccccC
Q 012303 417 TSDNHVCPICLTDPKDMAF--GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
..+...|+||++..++++. +|||.||..|+..+ ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3566799999999999884 99999999999865 479999999875
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.16 E-value=1.3e-06 Score=73.92 Aligned_cols=46 Identities=15% Similarity=-0.015 Sum_probs=40.0
Q ss_pred CCCCCCCCCCccCCCCCccc-cccCcccccchhcC----CCCccccccccC
Q 012303 416 STSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 416 ~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
...+...||||++..+|++. +|||.+|+.|+... ..||+||.+++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 34567899999999999998 99999999999764 379999999875
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.16 E-value=3.2e-07 Score=82.77 Aligned_cols=44 Identities=25% Similarity=0.485 Sum_probs=38.4
Q ss_pred CCCCCCCccCCCCCccc-cccCcccccchhcC-----CCCccccccccCc
Q 012303 419 DNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-----DLCPICRSFIQTR 462 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-----~~CPiCR~~I~~~ 462 (466)
+...|+||++...+++. +|||.||..|+..+ ..||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 44689999999999997 99999999999754 2799999998864
No 51
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.15 E-value=2.2e-07 Score=77.20 Aligned_cols=44 Identities=25% Similarity=0.572 Sum_probs=37.6
Q ss_pred CCCCCCCCccCCCCCcc-c-cccCcccccchhcC----CCCccccccccC
Q 012303 418 SDNHVCPICLTDPKDMA-F-GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~-~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
.+...|+||++...+++ + +|||.||..|+..+ ..||+||.++..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45579999999999986 4 89999999999754 379999999875
No 52
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.15 E-value=4.2e-06 Score=74.53 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=94.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
.++++.||-|+|+... .....+.|...+...+. .+-.+-++.|+.... .++++.
T Consensus 7 ~dvv~vlD~SgSM~~~---------------~~~~~~~~~~~~~~~~~---~~~~v~lv~f~~~~~---~~~~~~----- 60 (182)
T 1shu_X 7 FDLYFVLDKSGSVANN---------------WIEIYNFVQQLAERFVS---PEMRLSFIVFSSQAT---IILPLT----- 60 (182)
T ss_dssp EEEEEEEECSGGGGGG---------------HHHHHHHHHHHHHHCCC---TTEEEEEEEESSSEE---EEEEEE-----
T ss_pred eeEEEEEECCCCcccC---------------HHHHHHHHHHHHHHhcC---CCceEEEEEeCCCce---EEECCC-----
Confidence 5899999999999520 01122334444444443 466899999987542 233443
Q ss_pred cCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHH
Q 012303 205 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 282 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s--~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv 282 (466)
.+.+.+.++-.. +..+...|.|+....|+.|.+..... ...-.++++||||..++. ......+++.
T Consensus 61 -~~~~~~~~~l~~-l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~----------~~~~~~~~~~ 128 (182)
T 1shu_X 61 -GDRGKISKGLED-LKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL----------VPSYAEKEAK 128 (182)
T ss_dssp -CCHHHHHHHHHH-HHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT----------HHHHHHHHHH
T ss_pred -CCHHHHHHHHHh-cccCCCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC----------CchhHHHHHH
Confidence 122333222222 22345679999999999999987654 234578999999997651 1233445556
Q ss_pred HccCCCeEEEEEecCCCCCCcccccCC
Q 012303 283 KASEYPLSIILVGVGDGPWDMMREFDD 309 (466)
Q Consensus 283 ~AS~~PLSIIiVGVGd~~f~~M~~LDd 309 (466)
.+.+..+.|..||||+.+...|+++-+
T Consensus 129 ~~~~~~i~i~~igvg~~~~~~L~~ia~ 155 (182)
T 1shu_X 129 ISRSLGASVYCVGVLDFEQAQLERIAD 155 (182)
T ss_dssp HHHHTTCEEEEEECSSCCHHHHHHHSS
T ss_pred HHHhCCCEEEEEeCCcCCHHHHHHHhC
Confidence 666778999999999877777776644
No 53
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.15 E-value=1.2e-05 Score=71.87 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=91.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
.++++.||-|+|+... ...-.++++.+...+ ..++-.+-++.|+.... .++++..
T Consensus 8 ~div~vlD~SgSM~~~----------------~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~~---~~~~l~~---- 62 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHH----------------WNEIYYFVEQLAHKF--ISPQLRMSFIVFSTRGT---TLMKLTE---- 62 (185)
T ss_dssp EEEEEEEECSGGGGGG----------------HHHHHHHHHHHHHHC--CCTTEEEEEEEESSSEE---EEEEEEC----
T ss_pred eeEEEEEeCCCChhhh----------------HHHHHHHHHHHHHHh--CCCCcEEEEEEEecCce---EEeccCC----
Confidence 6899999999998410 011223333333322 23456899999987643 2345542
Q ss_pred cCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHh--cC--CceEEEEEEeCCccccCCCcccCcCchhHHHHHHH
Q 012303 205 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH--SG--GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEA 280 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~--s~--~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~a 280 (466)
..+.+.++-.++- .+...|-|+....|+.|.+.... .+ ..-.++++||||..++. ....+.++
T Consensus 63 --~~~~~~~~i~~l~-~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~----------~~~~~~~~ 129 (185)
T 3n2n_F 63 --DREQIRQGLEELQ-KVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHED----------LFFYSERE 129 (185)
T ss_dssp --CHHHHHHHHHHHH-TCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHH----------HHHHHHHH
T ss_pred --CHHHHHHHHHHHh-hhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCC----------cccchHHH
Confidence 3344433333322 22457899999999999986522 22 24578999999998761 11233556
Q ss_pred HHHccCCCeEEEEEecCCCCCCcccccCC
Q 012303 281 IVKASEYPLSIILVGVGDGPWDMMREFDD 309 (466)
Q Consensus 281 Iv~AS~~PLSIIiVGVGd~~f~~M~~LDd 309 (466)
+..+.+..+-|..||||+.+.+.|+++-+
T Consensus 130 ~~~~~~~gi~i~~igvg~~~~~~L~~iA~ 158 (185)
T 3n2n_F 130 ANRSRDLGAIVYAVGVKDFNETQLARIAD 158 (185)
T ss_dssp HHHHHHTTEEEEEEECSSCCHHHHTTTSS
T ss_pred HHHHHHCCCEEEEEEeccCCHHHHHHHhC
Confidence 66666778999999999877666666643
No 54
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=6.6e-06 Score=75.52 Aligned_cols=139 Identities=18% Similarity=0.264 Sum_probs=96.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
.++++.||-|+|+...+ ..++..+.|...+..++..+. +..+-++.|+.... .++++..
T Consensus 12 ~~iv~vlD~SgSM~~~d-------------~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~---~~~~~~~---- 70 (218)
T 3ibs_A 12 VEVIIALDISNSMLAQD-------------VQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAF---TQLPITS---- 70 (218)
T ss_dssp CEEEEEEECSGGGGCCS-------------SSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEE---EEEEEES----
T ss_pred CcEEEEEECCcCccccc-------------CCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCce---EeCCCCC----
Confidence 57999999999996421 125788888888888888887 55899999997632 2344432
Q ss_pred cCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHHc
Q 012303 205 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 284 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~A 284 (466)
..+.+.+.-..+-+.....|.|+....|+.|.+........-.++++||||..++. ...+++..+
T Consensus 71 --~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-------------~~~~~~~~~ 135 (218)
T 3ibs_A 71 --DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-------------GAVEAAKAA 135 (218)
T ss_dssp --CHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-------------CHHHHHHHH
T ss_pred --CHHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-------------cHHHHHHHH
Confidence 33333333233333344578999999999998776655445578999999998751 233445555
Q ss_pred cCCCeEEEEEecCCC
Q 012303 285 SEYPLSIILVGVGDG 299 (466)
Q Consensus 285 S~~PLSIIiVGVGd~ 299 (466)
.+..+.|..||||+.
T Consensus 136 ~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 136 AEKGIQVSVLGVGMP 150 (218)
T ss_dssp HTTTEEEEEEEESCT
T ss_pred HhcCCEEEEEEecCC
Confidence 667899999999984
No 55
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.14 E-value=4.5e-07 Score=77.93 Aligned_cols=47 Identities=26% Similarity=0.630 Sum_probs=40.2
Q ss_pred CCCCCCCCCCccCCCCCccc-cccCcccccchhcC-----CCCccccccccCc
Q 012303 416 STSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-----DLCPICRSFIQTR 462 (466)
Q Consensus 416 ~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-----~~CPiCR~~I~~~ 462 (466)
...+...|+||++...+++. +|||.||..|+..+ ..||+||.++...
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 34666799999999999987 99999999999754 3899999998763
No 56
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.13 E-value=7.8e-07 Score=72.79 Aligned_cols=46 Identities=15% Similarity=0.010 Sum_probs=40.0
Q ss_pred CCCCCCCCCccCCCCCccc-cccCcccccchhcC----CCCccccccccCc
Q 012303 417 TSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
..+...||||++..+|++. +|||.+|+.|+... ..||+||.+++..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4567899999999999998 99999999998754 4899999998753
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.11 E-value=9.4e-07 Score=84.65 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=38.1
Q ss_pred CCCCCCCCccCCCCCccc-cccCcccccchhcC-----CCCccccccccC
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-----DLCPICRSFIQT 461 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-----~~CPiCR~~I~~ 461 (466)
.+...||||++..+|++. +|||.||+.|+.+. ..||+||.+++.
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 356799999999999998 99999999999753 249999999875
No 58
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.11 E-value=4.5e-07 Score=76.86 Aligned_cols=43 Identities=21% Similarity=0.522 Sum_probs=33.9
Q ss_pred CCCCCCccCCCCCcc------------------c-cccCcccccchhcC---------CCCccccccccCc
Q 012303 420 NHVCPICLTDPKDMA------------------F-GCGHQTCCGCGQDL---------DLCPICRSFIQTR 462 (466)
Q Consensus 420 ~~~CpICl~~~kd~~------------------~-pCGH~~Cc~C~~~l---------~~CPiCR~~I~~~ 462 (466)
+..|+||++...+.. + +|||.||..|+..+ ..||+||..+..+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 358999999875532 4 99999999998753 2799999988654
No 59
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.10 E-value=4.4e-06 Score=76.67 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=95.1
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhc---ccccCCCCccceEeeCCCCCCCCcccccCC
Q 012303 124 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKT---LSSFDEDNLIPCFGFGDASTHDQEVFSFYP 200 (466)
Q Consensus 124 ~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~v---L~~yD~D~~ip~fGFGa~~~~~~~vF~f~~ 200 (466)
..++++.||-|+|+.+ ..++.+...+..+ |..++.+-.+-++.|+.... .++.+.
T Consensus 15 ~~div~vlD~SgSM~~------------------~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~---~~~~~~- 72 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGA------------------SNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVS- 72 (223)
T ss_dssp CEEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEE---EEECTT-
T ss_pred ceeEEEEEeCCCCCch------------------HHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccc---eeeccc-
Confidence 3689999999999963 1244444444444 55556667899999998643 223332
Q ss_pred CCCccCCHHHHHHHHHHhCCCc-eecCCCChHHHHHHHHHHHHhcC--------CceEEEEEEeCCccccCCCcccCcCc
Q 012303 201 DEKFCNGFEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVEHSG--------GQYHVLVIIADGQVTRSVDTEHGQLS 271 (466)
Q Consensus 201 ~~~~c~G~egvl~~Yr~~l~~v-~LsGPT~FapII~~a~~~v~~s~--------~~Y~VLlIITDG~i~d~~d~~~~~~s 271 (466)
.+.-...+.+.++-..+-+.. ...|.|+....|+.|.+...... ..-.++|+||||..+...|
T Consensus 73 -~~~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~------- 144 (223)
T 1q0p_A 73 -EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD------- 144 (223)
T ss_dssp -SGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSC-------
T ss_pred -cCCCCCHHHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCC-------
Confidence 222234455544433332221 24689999999999998876431 2457899999999873111
Q ss_pred hhHHHHHHHHHH----------ccCCCeEEEEEecCC-CCCCcccccC
Q 012303 272 SQEKKTVEAIVK----------ASEYPLSIILVGVGD-GPWDMMREFD 308 (466)
Q Consensus 272 ~~~~~Ti~aIv~----------AS~~PLSIIiVGVGd-~~f~~M~~LD 308 (466)
.....+.+.+ +.+..+-|..||||+ .+.+.|+++=
T Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA 190 (223)
T 1q0p_A 145 --PITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALA 190 (223)
T ss_dssp --THHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHS
T ss_pred --hHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHh
Confidence 2333444432 345678899999996 3555566553
No 60
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.10 E-value=5.9e-06 Score=86.86 Aligned_cols=151 Identities=12% Similarity=0.156 Sum_probs=104.2
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCC--
Q 012303 124 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPD-- 201 (466)
Q Consensus 124 ~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~-- 201 (466)
.+++++.||.|+|+.+. .+..+.|...+..++..+.++..|-++.|+.... .++++...
T Consensus 77 ~~dvv~VLD~SGSM~~~----------------~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~---~~~p~t~~l~ 137 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYP----------------RTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGAR---VVYPTGGQLL 137 (464)
T ss_dssp CEEEEEEEECCGGGGTT----------------THHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEE---EEESSSSSCE
T ss_pred CceEEEEEEcCcccCCC----------------CchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceE---EEecCCcccc
Confidence 37999999999999531 3667888888888888888888999999987642 22333210
Q ss_pred CCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAI 281 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aI 281 (466)
.....+.+.+ ++.+..++..|-|++..-|+.|.+...+..+.-.++++||||+.++. ....+...
T Consensus 138 ~~~~~~~~~l----~~~I~~L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~-----------~~~~l~~~ 202 (464)
T 4fx5_A 138 RADYQSRAAA----KEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESE-----------TPADLARA 202 (464)
T ss_dssp ECSHHHHHHH----HHHHHTCCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTS-----------CHHHHHHH
T ss_pred cCCHHHHHHH----HHHHHcCCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCC-----------ChHHHHHH
Confidence 0001223333 44455667789999999999999988776555678999999997741 12234444
Q ss_pred HHccCCCeEEEEEecCCC-CCCcccccC
Q 012303 282 VKASEYPLSIILVGVGDG-PWDMMREFD 308 (466)
Q Consensus 282 v~AS~~PLSIIiVGVGd~-~f~~M~~LD 308 (466)
.++....+.|..||||+. +.+.|+++-
T Consensus 203 ~~a~~~~i~i~tiGiG~~~d~~~L~~IA 230 (464)
T 4fx5_A 203 IQSSIGNFTADCRGIGEDWEPKELRKIA 230 (464)
T ss_dssp HHHHTTTCEEEEEEESSSSCHHHHHHHH
T ss_pred HHHhcCCCeEEEEEeCCccCHHHHHHHH
Confidence 456677899999999963 555555553
No 61
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.07 E-value=6.1e-07 Score=81.16 Aligned_cols=45 Identities=31% Similarity=0.699 Sum_probs=37.8
Q ss_pred CCCCCCCCCccCCCCCccc--cccCcccccchhcC-----CCCccccccccC
Q 012303 417 TSDNHVCPICLTDPKDMAF--GCGHQTCCGCGQDL-----DLCPICRSFIQT 461 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l-----~~CPiCR~~I~~ 461 (466)
..+...|+||++...+++. +|||.||..|+..+ ..||+||.++..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3455699999999999874 99999999999764 369999999854
No 62
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.02 E-value=3.1e-07 Score=78.32 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=38.6
Q ss_pred CCCCCCCCCccCCCCCccc-cccCcccccchhcC-----CCCccccccccC
Q 012303 417 TSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-----DLCPICRSFIQT 461 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-----~~CPiCR~~I~~ 461 (466)
..+...|+||++...+++. +|||.||..|+..+ ..||+||.++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3456799999999999987 99999999999753 479999999875
No 63
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.97 E-value=6.4e-07 Score=80.03 Aligned_cols=43 Identities=21% Similarity=0.457 Sum_probs=37.8
Q ss_pred CCCCCCCCCccCCCCCccc-cccCcccccchhcC-----CCCccccccc
Q 012303 417 TSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-----DLCPICRSFI 459 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-----~~CPiCR~~I 459 (466)
..+...|+||++..++++. +|||.||..|+..+ ..||+||.++
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4567899999999999987 99999999999865 2799999975
No 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.95 E-value=1.1e-06 Score=75.19 Aligned_cols=45 Identities=36% Similarity=0.871 Sum_probs=37.5
Q ss_pred CCCCCCCCccCCCCCc-------cc-cccCcccccchhcC----CCCccccccccCc
Q 012303 418 SDNHVCPICLTDPKDM-------AF-GCGHQTCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~-------~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
.+...|+||++..+++ +. +|||.||..|+..+ ..||+||..+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3567999999998876 55 99999999999754 4899999998753
No 65
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.95 E-value=2.7e-06 Score=77.04 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=87.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccccc-CCCCccceEeeCCCCCCCCcccccCCCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF-DEDNLIPCFGFGDASTHDQEVFSFYPDEK 203 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~y-D~D~~ip~fGFGa~~~~~~~vF~f~~~~~ 203 (466)
.++++.||-|+|+.. ..++.++..+-.++..+ .++-.+-++.|+.... .++.++...
T Consensus 10 ~div~vlD~SgSM~~------------------~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~---~~~~~~~~~- 67 (198)
T 1n3y_A 10 QDIVFLIDGSGSISS------------------RNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEEFR- 67 (198)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEE---EEECHHHHH-
T ss_pred eeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCcc---EEEecCccC-
Confidence 589999999999952 24567777777777777 5777899999998632 223332100
Q ss_pred ccCCHHHHHHHHHHhCCCce-ecCCCChHHHHHHHHHH-HHhc----CCceEEEEEEeCCccc-cCCCcccCcCchhHHH
Q 012303 204 FCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITI-VEHS----GGQYHVLVIIADGQVT-RSVDTEHGQLSSQEKK 276 (466)
Q Consensus 204 ~c~G~egvl~~Yr~~l~~v~-LsGPT~FapII~~a~~~-v~~s----~~~Y~VLlIITDG~i~-d~~d~~~~~~s~~~~~ 276 (466)
.. +...+.+..+. ..|.|+....|+.|.+. .... ...-.++++||||..+ |.. +..+
T Consensus 68 ~~-------~~~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~---------~~~~ 131 (198)
T 1n3y_A 68 RS-------SNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL---------DYKD 131 (198)
T ss_dssp HC-------SSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSS---------CHHH
T ss_pred CH-------HHHHHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcc---------cHHH
Confidence 00 11123344443 67899999999999844 3321 2346789999999987 321 1233
Q ss_pred HHHHHHHccCCCeEEEEEecCCCC
Q 012303 277 TVEAIVKASEYPLSIILVGVGDGP 300 (466)
Q Consensus 277 Ti~aIv~AS~~PLSIIiVGVGd~~ 300 (466)
++..+.+..+-|..||||+..
T Consensus 132 ---~~~~~~~~gi~i~~igvG~~~ 152 (198)
T 1n3y_A 132 ---VIPMADAAGIIRYAIGVGLAF 152 (198)
T ss_dssp ---HHHHHHHTTCEEEEEEESGGG
T ss_pred ---HHHHHHHCCCEEEEEEccccc
Confidence 344445667899999999853
No 66
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=97.94 E-value=2.3e-05 Score=70.86 Aligned_cols=141 Identities=14% Similarity=0.208 Sum_probs=93.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD---~D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
.++++.||-|+|++ .+.++++...+..++..++ ++-.+-++.|+.... .+|+|+.
T Consensus 6 ~div~vlD~SgSm~------------------~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~- 63 (189)
T 1atz_A 6 LDVILLLDGSSSFP------------------ASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITT---IDVPWNV- 63 (189)
T ss_dssp EEEEEEEECSSSSC------------------HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTC-
T ss_pred eeEEEEEeCCCCCC------------------hhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcce---EEEecCC-
Confidence 58999999999984 1457777777777777776 234799999987543 2345532
Q ss_pred CCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCccccCCCcccCcCchhHHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 276 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s-----~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~ 276 (466)
....+.+.++-.++ +. ..|.|+....|+.|.+..... .+.-.++||||||..+|. ..+
T Consensus 64 ---~~~~~~~~~~i~~l-~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~-----------~~~ 126 (189)
T 1atz_A 64 ---VPEKAHLLSLVDVM-QR--EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS-----------VDA 126 (189)
T ss_dssp ---CCCHHHHHHHHHTC-CC--CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC-----------CHH
T ss_pred ---CCCHHHHHHHHHhC-cC--CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch-----------HHH
Confidence 12445555544332 22 368899999999999887542 234577889999987651 234
Q ss_pred HHHHHHHccCCCeEEEEEecCC-CCCCccccc
Q 012303 277 TVEAIVKASEYPLSIILVGVGD-GPWDMMREF 307 (466)
Q Consensus 277 Ti~aIv~AS~~PLSIIiVGVGd-~~f~~M~~L 307 (466)
..+.+. +..+-|..||||+ .+-..|+.+
T Consensus 127 ~~~~~~---~~gi~v~~igvG~~~~~~~L~~i 155 (189)
T 1atz_A 127 AADAAR---SNRVTVFPIGIGDRYDAAQLRIL 155 (189)
T ss_dssp HHHHHH---HTTEEEEEEEESSSSCHHHHHHH
T ss_pred HHHHHH---HCCCEEEEEEcCCcCCHHHHHHH
Confidence 444444 4688999999998 344444444
No 67
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.91 E-value=2.2e-05 Score=72.27 Aligned_cols=144 Identities=10% Similarity=0.158 Sum_probs=93.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD---~D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
.++++.||-|+|++ .+.++++...+..++..|+ ++-.+-+..|+.... .+|+|+..
T Consensus 14 ~divfvlD~SgSm~------------------~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~~ 72 (202)
T 1ijb_A 14 LDLVFLLDGSSRLS------------------EAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSH---AYIGLKDR 72 (202)
T ss_dssp EEEEEEEECBTTSC------------------HHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEE---EEECTTCC
T ss_pred ccEEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCce---EEEecCCC
Confidence 68999999999984 2357778888888888887 445899999987642 23555421
Q ss_pred CCccCCHHHHHHHHHHhCCCcee-cC-CCChHHHHHHHHHHH-Hhc--CCceEEEEEEeCCccccCCCcccCcCchhHHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRL-AG-PTSFAPIIEMAITIV-EHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 276 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~L-sG-PT~FapII~~a~~~v-~~s--~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~ 276 (466)
...+.+.++- ..++. .| .|+....|+.|.+.. .+. ...-.++|+||||.-++. + .+.
T Consensus 73 ----~~~~~~~~~i----~~l~~~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~--------~--~~~ 134 (202)
T 1ijb_A 73 ----KRPSELRRIA----SQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQR--------M--SRN 134 (202)
T ss_dssp ----CCHHHHHHHH----HTCCCCCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGG--------G--CTT
T ss_pred ----CCHHHHHHHH----HhCcCCCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCcc--------c--hHH
Confidence 2344444433 23333 45 399999999987543 221 234579999999997641 0 112
Q ss_pred HHHHHHHccCCCeEEEEEecCC-CCCCccccc
Q 012303 277 TVEAIVKASEYPLSIILVGVGD-GPWDMMREF 307 (466)
Q Consensus 277 Ti~aIv~AS~~PLSIIiVGVGd-~~f~~M~~L 307 (466)
..+++..+-+..+-|..||||+ .+.+.|+.+
T Consensus 135 ~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~i 166 (202)
T 1ijb_A 135 FVRYVQGLKKKKVIVIPVGIGPHANLKQIRLI 166 (202)
T ss_dssp HHHHHHHHHHTTEEEEEEEESTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCHHHHHHH
Confidence 3333344445689999999996 455556555
No 68
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.90 E-value=6.6e-05 Score=69.83 Aligned_cols=132 Identities=20% Similarity=0.291 Sum_probs=89.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD---~D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
.++++.||-|+|+. .++++...+..++..++ ++-.+-++.|+.... .+|+|+.
T Consensus 23 ~div~vlD~SgSM~--------------------~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~---~~~~l~~- 78 (223)
T 2b2x_A 23 LDIVIVLDGSNSIY--------------------PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLNK- 78 (223)
T ss_dssp EEEEEEEECSTTCC--------------------CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEE---EEECTTT-
T ss_pred ceEEEEEECCCChh--------------------hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCcc---EEEecCC-
Confidence 68999999999983 15677777777777775 567899999987542 2345521
Q ss_pred CCccCCHHHHHHHHHHhCCCcee-cC-CCChHHHHHHHHHHH-Hh----cCCceEEEEEEeCCccccCCCcccCcCchhH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRL-AG-PTSFAPIIEMAITIV-EH----SGGQYHVLVIIADGQVTRSVDTEHGQLSSQE 274 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~L-sG-PT~FapII~~a~~~v-~~----s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~ 274 (466)
....+.++++ +..+.. .| -|+....|+.|.+.. .. ..+.-.++|+||||..++..
T Consensus 79 ---~~~~~~~~~~----i~~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~----------- 140 (223)
T 2b2x_A 79 ---YSSTEEVLVA----ANKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNY----------- 140 (223)
T ss_dssp ---CCSHHHHHHH----HTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGG-----------
T ss_pred ---CCCHHHHHHH----HHhhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc-----------
Confidence 1345555543 334443 45 499999999998762 21 12345789999999987621
Q ss_pred HHHHHHHHHccCCCeEEEEEecCCC
Q 012303 275 KKTVEAIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 275 ~~Ti~aIv~AS~~PLSIIiVGVGd~ 299 (466)
...+++..+.+..+-|..||||+.
T Consensus 141 -~~~~~~~~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 141 -RLKQVIQDCEDENIQRFSIAILGH 164 (223)
T ss_dssp -GHHHHHHHHHTTTEEEEEEEECGG
T ss_pred -cHHHHHHHHHHCCCEEEEEEecCc
Confidence 233344445567899999999964
No 69
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.89 E-value=1.6e-05 Score=82.73 Aligned_cols=154 Identities=15% Similarity=0.198 Sum_probs=99.7
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccccc---CCCCccceEeeCCCCCCCCcccccCC
Q 012303 124 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF---DEDNLIPCFGFGDASTHDQEVFSFYP 200 (466)
Q Consensus 124 ~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~y---D~D~~ip~fGFGa~~~~~~~vF~f~~ 200 (466)
.+++++.||-|+|++ ...+++|.+.+..++..+ ..+-.+-+..|+.... .+|++..
T Consensus 9 ~~divfvlD~SgSM~------------------~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 67 (509)
T 2odp_A 9 HLNLYLLLDASQSVS------------------ENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPK---VLMSVLN 67 (509)
T ss_dssp EEEEEEEEECSTTSC------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEE---EEECTTS
T ss_pred CeeEEEEEeCCCccc------------------hhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCc---eeEeccC
Confidence 478999999999995 134577777777776666 6778999999987543 2344421
Q ss_pred CCCccCCHHHHHHHHHHhCCCcee-cCCCChHHHHHHHHHHHHhcC-----------CceEEEEEEeCCccccCCCcccC
Q 012303 201 DEKFCNGFEEVLRRYRELVPHLRL-AGPTSFAPIIEMAITIVEHSG-----------GQYHVLVIIADGQVTRSVDTEHG 268 (466)
Q Consensus 201 ~~~~c~G~egvl~~Yr~~l~~v~L-sGPT~FapII~~a~~~v~~s~-----------~~Y~VLlIITDG~i~d~~d~~~~ 268 (466)
+.-...+.++++-.++-..... .|.|+....|+.|.+..+... ..-.++++||||.-++..|
T Consensus 68 --~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~---- 141 (509)
T 2odp_A 68 --DNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGS---- 141 (509)
T ss_dssp --GGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSC----
T ss_pred --CCCCCHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCC----
Confidence 1122455554433322211111 378999999999998764321 1337899999998775221
Q ss_pred cCchhHHHHHHHHHHc------cCCCeEEEEEecCC--CCCCcccccCC
Q 012303 269 QLSSQEKKTVEAIVKA------SEYPLSIILVGVGD--GPWDMMREFDD 309 (466)
Q Consensus 269 ~~s~~~~~Ti~aIv~A------S~~PLSIIiVGVGd--~~f~~M~~LDd 309 (466)
..+..+.+.+. .+..+-|..||||+ .+.+.|+++-+
T Consensus 142 -----~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~ 185 (509)
T 2odp_A 142 -----PKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGS 185 (509)
T ss_dssp -----THHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSC
T ss_pred -----hhHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhcc
Confidence 34445555532 26678899999998 57777777754
No 70
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.82 E-value=0.00014 Score=67.10 Aligned_cols=132 Identities=17% Similarity=0.275 Sum_probs=88.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD---~D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
.++++.||-|+|+. .++.+...+-.++..++ ++-.+-++.|+.... .+|+|+.
T Consensus 8 ~div~vlD~SgSm~--------------------~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~---~~~~l~~- 63 (213)
T 1pt6_A 8 LDIVIVLDGSNSIY--------------------PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLNK- 63 (213)
T ss_dssp EEEEEEEECCTTCC--------------------CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEE---EEECTTT-
T ss_pred ccEEEEEECCCChh--------------------hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCcc---EEEeccc-
Confidence 68999999999984 15666666666777665 677899999997542 2345521
Q ss_pred CCccCCHHHHHHHHHHhCCCce-ecC-CCChHHHHHHHHHHH-Hh----cCCceEEEEEEeCCccccCCCcccCcCchhH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLR-LAG-PTSFAPIIEMAITIV-EH----SGGQYHVLVIIADGQVTRSVDTEHGQLSSQE 274 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~-LsG-PT~FapII~~a~~~v-~~----s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~ 274 (466)
....+.++++-. .+. ..| -|+....|+.|.+.. .. ....-.++++||||..++.
T Consensus 64 ---~~~~~~~~~~i~----~l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~------------ 124 (213)
T 1pt6_A 64 ---YSSTEEVLVAAK----KIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN------------ 124 (213)
T ss_dssp ---CSSHHHHHHHHH----TCCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS------------
T ss_pred ---cCCHHHHHHHHH----hccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC------------
Confidence 234556655433 333 256 499999999998753 21 1234688999999998762
Q ss_pred HHHHHHHHHccCCCeEEEEEecCCC
Q 012303 275 KKTVEAIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 275 ~~Ti~aIv~AS~~PLSIIiVGVGd~ 299 (466)
....+++..+.+..+-|..||||+.
T Consensus 125 ~~~~~~~~~~~~~gi~i~~igig~~ 149 (213)
T 1pt6_A 125 HRLKKVIQDCEDENIQRFSIAILGS 149 (213)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEECHH
T ss_pred ccHHHHHHHHHHCCCEEEEEEeccc
Confidence 1233444445556889999999963
No 71
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.82 E-value=2.6e-06 Score=76.87 Aligned_cols=152 Identities=13% Similarity=0.216 Sum_probs=90.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc-cCCCCccceEeeCCCCCCCCcccccCCCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS-FDEDNLIPCFGFGDASTHDQEVFSFYPDEK 203 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~-yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~ 203 (466)
.++++.||-|+|+. | +..+.|...+..++.. +..+..+-++.|+..... .++++.
T Consensus 6 ~~vv~vlD~SgSM~--~----------------~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~--~~~~~~---- 61 (189)
T 2x31_A 6 RVLIFAVDASGSAA--V----------------ARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQ--VLLQPS---- 61 (189)
T ss_dssp CEEEEEEECCTTSC--C------------------CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCC--BCTTTC----
T ss_pred eEEEEEEECCCCCC--c----------------hHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCce--EecCCC----
Confidence 47999999999994 1 2334444444444433 366778999999963221 122221
Q ss_pred ccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccCCCcccCcCchh-HHHHHHH
Q 012303 204 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQ-EKKTVEA 280 (466)
Q Consensus 204 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~--~~Y~VLlIITDG~i~d~~d~~~~~~s~~-~~~Ti~a 280 (466)
.+.+.+.+. +..+...|-|++...|+.|.+..++.. +.-.++++||||..++..+..+.. ++ .++..++
T Consensus 62 --~~~~~~~~~----i~~l~~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~--~~~~~~~~~~ 133 (189)
T 2x31_A 62 --RSLTQTKRQ----LQGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANR--ELAGEQATKV 133 (189)
T ss_dssp --SCHHHHHHH----HHHCCCCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHH--GGGTCCCEEE
T ss_pred --CCHHHHHHH----HhcCCCCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccc--cchhHHHHHH
Confidence 244544333 334556799999999999999887642 235788999999987532100000 00 0011112
Q ss_pred HHHccCCCeEEEEEecCCCCCCcccccC
Q 012303 281 IVKASEYPLSIILVGVGDGPWDMMREFD 308 (466)
Q Consensus 281 Iv~AS~~PLSIIiVGVGd~~f~~M~~LD 308 (466)
+..+.+..+.|+.||+|+.+...|+++-
T Consensus 134 ~~~~~~~gi~v~~ig~g~~~~~~L~~iA 161 (189)
T 2x31_A 134 ARAIRASGMPAVIIDTAMRPNPALVDLA 161 (189)
T ss_dssp EECTGGGGSCCTHHHHHHSSCSSSCSTT
T ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 2223345578888999988766666663
No 72
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.79 E-value=3.6e-06 Score=76.34 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=40.2
Q ss_pred CCCCCCCCCCccCCCCCccc-cccCcccccchhcC-----CCCccccccccC
Q 012303 416 STSDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-----DLCPICRSFIQT 461 (466)
Q Consensus 416 ~~~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-----~~CPiCR~~I~~ 461 (466)
...+...|+||++...+++. +|||.||..|+.++ ..||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 34667899999999999987 99999999999864 389999999876
No 73
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00012 Score=72.25 Aligned_cols=164 Identities=13% Similarity=0.209 Sum_probs=112.5
Q ss_pred CceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCCCCccc-c
Q 012303 122 LESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHDQEVF-S 197 (466)
Q Consensus 122 le~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~---yD~D~~ip~fGFGa~~~~~~~vF-~ 197 (466)
|| .+||.||-|.|+... +-.+|-++.+..++-.++.. -+....+-+..|++... .|. +
T Consensus 3 lE--AtViviD~S~SM~~~-------------D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~---~vl~p 64 (268)
T 4b4t_W 3 LE--ATVLVIDNSEYSRNG-------------DFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANP---RVLST 64 (268)
T ss_dssp CE--EEEEEECCSSTTSST-------------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSC---EEEEE
T ss_pred ce--eEEEEEECCHHHhCC-------------CCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcc---eeccC
Confidence 55 378999999998532 11368888777766666654 45567899999976532 121 2
Q ss_pred cCCCCCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCccccCCCcccCcCchhHH
Q 012303 198 FYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEK 275 (466)
Q Consensus 198 f~~~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s--~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~ 275 (466)
+ -.....++ ..+..++..|-|++..-|+.|...++.. ...-..+||++||.+.+ +.+
T Consensus 65 l------T~D~~~il----~aL~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~-----------~~~ 123 (268)
T 4b4t_W 65 F------TAEFGKIL----AGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD-----------SRD 123 (268)
T ss_dssp E------ESCHHHHH----HHHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS-----------CHH
T ss_pred C------cchHHHHH----HHhhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC-----------CHH
Confidence 2 12344443 4566788999999999999999998754 23456678899998775 367
Q ss_pred HHHHHHHHccCCCeEEEEEecCCCCC--CcccccCCCCCccccceeeeecc
Q 012303 276 KTVEAIVKASEYPLSIILVGVGDGPW--DMMREFDDNIPARAFDNFQFVNF 324 (466)
Q Consensus 276 ~Ti~aIv~AS~~PLSIIiVGVGd~~f--~~M~~LDd~~~~R~rDNvqFV~f 324 (466)
+.++++.++.+.-++|=+||+|.+++ +.|++|=+......-|+-+||..
T Consensus 124 ~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v 174 (268)
T 4b4t_W 124 ELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 (268)
T ss_dssp HHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEe
Confidence 78888888888889999999997654 44666633222222378888875
No 74
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.77 E-value=5.7e-05 Score=78.06 Aligned_cols=153 Identities=12% Similarity=0.137 Sum_probs=98.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~---yD~D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
+++++.||-|+|++. +.++.|...+..++.. +..+-.+-++.|++... .++.| .
T Consensus 2 ~div~vlD~SgSM~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~---~~~~~--~ 58 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGA------------------SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKV--S 58 (497)
T ss_dssp EEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECT--T
T ss_pred eeEEEEEECCCCcch------------------hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCce---Eeecc--c
Confidence 579999999999951 4566666665555554 45567899999997532 22333 2
Q ss_pred CCccCCHHHHHHHHHHhCCCc-eecCCCChHHHHHHHHHHHHhc--------CCceEEEEEEeCCccccCCCcccCcCch
Q 012303 202 EKFCNGFEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVEHS--------GGQYHVLVIIADGQVTRSVDTEHGQLSS 272 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v-~LsGPT~FapII~~a~~~v~~s--------~~~Y~VLlIITDG~i~d~~d~~~~~~s~ 272 (466)
.+.-...+.++++-.++-+.. ...|.|+....|+.|.+..... ...-.++++||||.-++..
T Consensus 59 ~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~--------- 129 (497)
T 1rrk_A 59 EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG--------- 129 (497)
T ss_dssp SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS---------
T ss_pred cccccCHHHHHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC---------
Confidence 233345566665554443322 2568899999999999887321 1235789999999877522
Q ss_pred hHHHHHHHHHHcc----------CCCeEEEEEecCC-CCCCcccccCC
Q 012303 273 QEKKTVEAIVKAS----------EYPLSIILVGVGD-GPWDMMREFDD 309 (466)
Q Consensus 273 ~~~~Ti~aIv~AS----------~~PLSIIiVGVGd-~~f~~M~~LDd 309 (466)
+..+..+.+.+.. +..+-|..||||+ .+.+.|+++=.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~ 177 (497)
T 1rrk_A 130 DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 177 (497)
T ss_dssp CTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred ChhHHHHHHHHHhhhhcccccchhcCeeEEEecCCCccCHHHHHHHhc
Confidence 2345555555441 2278899999997 45555666543
No 75
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=6.9e-06 Score=68.17 Aligned_cols=41 Identities=27% Similarity=0.487 Sum_probs=35.1
Q ss_pred CCCCCCCCccCCCCCccc-c-ccCcccccchhcC----------CCCcc--cccc
Q 012303 418 SDNHVCPICLTDPKDMAF-G-CGHQTCCGCGQDL----------DLCPI--CRSF 458 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-p-CGH~~Cc~C~~~l----------~~CPi--CR~~ 458 (466)
.++..||||++..+|++. + |||.||..|+... ..||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 566799999999999997 6 9999999998643 37999 9865
No 76
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=7.1e-06 Score=66.20 Aligned_cols=43 Identities=23% Similarity=0.581 Sum_probs=33.1
Q ss_pred CCCCCCCccCCCCC--------------c-cc-cccCcccccchhcC----CCCccccccccC
Q 012303 419 DNHVCPICLTDPKD--------------M-AF-GCGHQTCCGCGQDL----DLCPICRSFIQT 461 (466)
Q Consensus 419 e~~~CpICl~~~kd--------------~-~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~ 461 (466)
++..|+||++...+ . ++ +|||.|+.+|+... ..||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 44579999887755 2 33 59999999999854 379999998764
No 77
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.73 E-value=0.00026 Score=65.84 Aligned_cols=163 Identities=13% Similarity=0.192 Sum_probs=105.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccccc---CCCCccceEeeCCCCCCCCcccccCCCC
Q 012303 126 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF---DEDNLIPCFGFGDASTHDQEVFSFYPDE 202 (466)
Q Consensus 126 nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~y---D~D~~ip~fGFGa~~~~~~~vF~f~~~~ 202 (466)
.++++||.|.|+...+ + .+|-.+.|...+-.++..| .....+-+..|++...+. +.++.
T Consensus 4 ~lvlvlD~S~SM~~~D--------~-----~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~--~~plT--- 65 (192)
T 2x5n_A 4 ATMILIDNSEWMINGD--------Y-----IPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV--LSTLT--- 65 (192)
T ss_dssp EEEEEECCSGGGGCTT--------S-----SSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE--EEEEE---
T ss_pred EEEEEEECCHhhccCC--------C-----CCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE--ecCCC---
Confidence 5899999999996321 1 3788998888777766544 345689999998742221 12332
Q ss_pred CccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcC--Cce-EEEEEEeCCccccCCCcccCcCchhHHHHHH
Q 012303 203 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQY-HVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 279 (466)
Q Consensus 203 ~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~--~~Y-~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~ 279 (466)
...+.+ .+.+..+...|.|++..-|+.|.+..++.. ... -|+|+++|+. ++ +..+..+
T Consensus 66 ---~d~~~i----~~~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~-~~-----------~~~~~~~ 126 (192)
T 2x5n_A 66 ---RDYGKF----LSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPI-VE-----------DEKNLIR 126 (192)
T ss_dssp ---SCHHHH----HHHHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCC-SS-----------CHHHHHH
T ss_pred ---CCHHHH----HHHHHcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCC-CC-----------CchhHHH
Confidence 223444 344455778899999999999999887653 223 3455555544 32 2556677
Q ss_pred HHHHccCCCeEEEEEecCCCCCCc-ccccCCCCCccccceeeeeccccc
Q 012303 280 AIVKASEYPLSIILVGVGDGPWDM-MREFDDNIPARAFDNFQFVNFTEI 327 (466)
Q Consensus 280 aIv~AS~~PLSIIiVGVGd~~f~~-M~~LDd~~~~R~rDNvqFV~f~~i 327 (466)
++..+.+.-+.|.+||+|..+.+. |++|=+... .-||-+||...+-
T Consensus 127 ~a~~lk~~gi~v~~Ig~G~~~~~~~l~~la~~~n--~~~~s~~~~~~~~ 173 (192)
T 2x5n_A 127 LAKRMKKNNVAIDIIHIGELQNESALQHFIDAAN--SSDSCHLVSIPPS 173 (192)
T ss_dssp HHHHHHHTTEEEEEEEESCC---CHHHHHHHHHC--STTCCEEEEECCC
T ss_pred HHHHHHHCCCEEEEEEeCCCCccHHHHHHHHhcc--CCCceEEEEecCc
Confidence 777788889999999999876532 766643211 1277888865443
No 78
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.72 E-value=1.5e-05 Score=72.31 Aligned_cols=134 Identities=19% Similarity=0.262 Sum_probs=87.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC-CCccceEeeCCCCCCCCcccccCCCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE-DNLIPCFGFGDASTHDQEVFSFYPDEK 203 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~-D~~ip~fGFGa~~~~~~~vF~f~~~~~ 203 (466)
.++++.||-|+|++. ..++++...+..++..++. +-.+-++.|+.... .+|+|+...
T Consensus 6 ~div~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~---~~~~l~~~~- 63 (194)
T 1mf7_A 6 SDIAFLIDGSGSIIP------------------HDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFR---IHFTFKEFQ- 63 (194)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEE---EEECHHHHH-
T ss_pred eeEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCce---EEEecCCcC-
Confidence 589999999999851 3567777777777777763 45899999988643 234443210
Q ss_pred ccCCHHHHHHHHHHhCCCce-ecCCCChHHHHHHHHHHH-Hh-c---CCceEEEEEEeCCccc-cCCCcccCcCchhHHH
Q 012303 204 FCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIV-EH-S---GGQYHVLVIIADGQVT-RSVDTEHGQLSSQEKK 276 (466)
Q Consensus 204 ~c~G~egvl~~Yr~~l~~v~-LsGPT~FapII~~a~~~v-~~-s---~~~Y~VLlIITDG~i~-d~~d~~~~~~s~~~~~ 276 (466)
.-..+ .+.+..+. ..|.|+....|+.|.+.. .. . .+.-.++++||||..+ |..+ ..+
T Consensus 64 ~~~~~-------~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~---------~~~ 127 (194)
T 1mf7_A 64 NNPNP-------RSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLG---------YED 127 (194)
T ss_dssp HSCCH-------HHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSC---------GGG
T ss_pred CHHHH-------HHHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchh---------hHH
Confidence 00122 22334454 479999999999998643 22 1 1245889999999987 4221 122
Q ss_pred HHHHHHHccCCCeEEEEEecCCC
Q 012303 277 TVEAIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 277 Ti~aIv~AS~~PLSIIiVGVGd~ 299 (466)
. +.++-+..+.|..||||+.
T Consensus 128 ~---~~~~~~~gi~v~~igvG~~ 147 (194)
T 1mf7_A 128 V---IPEADREGVIRYVIGVGDA 147 (194)
T ss_dssp T---HHHHHHTTEEEEEEEESGG
T ss_pred H---HHHHHHCCCEEEEEEeccc
Confidence 3 3334456899999999985
No 79
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.72 E-value=4.3e-06 Score=71.47 Aligned_cols=45 Identities=36% Similarity=0.871 Sum_probs=37.0
Q ss_pred CCCCCCCCccCCCCCc-------cc-cccCcccccchhcC----CCCccccccccCc
Q 012303 418 SDNHVCPICLTDPKDM-------AF-GCGHQTCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~-------~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
.+...|+||++...++ +. +|||.||..|+.++ ..||+||.++...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4557899999987764 44 99999999999753 5899999998863
No 80
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.69 E-value=0.00012 Score=79.44 Aligned_cols=150 Identities=12% Similarity=0.142 Sum_probs=95.8
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCCCCcccccCC
Q 012303 124 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHDQEVFSFYP 200 (466)
Q Consensus 124 ~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~---yD~D~~ip~fGFGa~~~~~~~vF~f~~ 200 (466)
.+++++.||-|+|++. +.++++...+..++.. ++..-.|-+.-|+.... .++.|+.
T Consensus 243 ~~div~vlD~SgSM~~------------------~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 301 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGA------------------SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVSE 301 (741)
T ss_dssp EEEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTTS
T ss_pred ceeEEEEeccCCcccc------------------cchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc---eeEeecc
Confidence 3689999999999952 2355555555555544 44556799999987542 2344433
Q ss_pred CCCccCCHHHHHHHHHHhCCCce-----ecCCCChHHHHHHHHHHHHh--------cCCceEEEEEEeCCccccCCCccc
Q 012303 201 DEKFCNGFEEVLRRYRELVPHLR-----LAGPTSFAPIIEMAITIVEH--------SGGQYHVLVIIADGQVTRSVDTEH 267 (466)
Q Consensus 201 ~~~~c~G~egvl~~Yr~~l~~v~-----LsGPT~FapII~~a~~~v~~--------s~~~Y~VLlIITDG~i~d~~d~~~ 267 (466)
.+ -...+.++++ +..+. ..|-|+....|+.|.+.... ....-.++|+||||+-+.-.
T Consensus 302 ~~--~~~~~~~~~~----i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~---- 371 (741)
T 3hrz_D 302 AD--SSNADWVTKQ----LNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG---- 371 (741)
T ss_dssp GG--GGCHHHHHHH----HTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSS----
T ss_pred cC--CcCHHHHHHH----HHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCC----
Confidence 11 1244555443 44444 67899999999999988721 11235789999999876421
Q ss_pred CcCchhHHHHHHHHH----------HccCCCeEEEEEecCC-CCCCcccccCC
Q 012303 268 GQLSSQEKKTVEAIV----------KASEYPLSIILVGVGD-GPWDMMREFDD 309 (466)
Q Consensus 268 ~~~s~~~~~Ti~aIv----------~AS~~PLSIIiVGVGd-~~f~~M~~LDd 309 (466)
+....++.|. .+.+..+-|..||||+ .+.+.|++|-.
T Consensus 372 -----~p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~ 419 (741)
T 3hrz_D 372 -----DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 419 (741)
T ss_dssp -----CTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred -----CchHHHHHHHHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhc
Confidence 1344555555 3445678999999997 55556666643
No 81
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.66 E-value=7.9e-06 Score=76.25 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=38.2
Q ss_pred CCCCCCCCccCCCCCccc-cccCcccccchhcC-----CCCccccccccCc
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQDL-----DLCPICRSFIQTR 462 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~~Cc~C~~~l-----~~CPiCR~~I~~~ 462 (466)
.+...||||++..+|+|. +|||.+|+.|+... ..||+||.+++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 355699999999999998 99999999998753 2599999998753
No 82
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.66 E-value=0.00038 Score=63.43 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=89.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD---~D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
.++++.||-|+|+. | ++++...+..++..++ ++-.+-++.|+.... .+|+|+.
T Consensus 7 ~div~vlD~SgSm~-------------------~-~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~---~~~~l~~- 62 (200)
T 1v7p_C 7 IDVVVVCDESNSIY-------------------P-WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPR---VVFNLNT- 62 (200)
T ss_dssp EEEEEEEECCTTCC-------------------C-HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEE---EEECTTT-
T ss_pred ccEEEEEECCCCcc-------------------c-HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCce---EEEeCCC-
Confidence 58999999999983 1 5677777777777776 567899999987542 2455541
Q ss_pred CCccCCHHHHHHHHHHhCCCcee-cC-CCChHHHHHHHHHH-HHhc----CCceEEEEEEeCCccccCCCcccCcCchhH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRL-AG-PTSFAPIIEMAITI-VEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQE 274 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~L-sG-PT~FapII~~a~~~-v~~s----~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~ 274 (466)
....+.++++-.+ +.. .| -|+....|+.|.+. .... ...-.++|+||||..++.. +.
T Consensus 63 ---~~~~~~~~~~i~~----l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~---------~~ 126 (200)
T 1v7p_C 63 ---YKTKEEMIVATSQ----TSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGS---------ML 126 (200)
T ss_dssp ---CSSHHHHHHHHHH----CCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGG---------GH
T ss_pred ---cCCHHHHHHHHHh----hhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcc---------cH
Confidence 2356666655443 332 35 59999999999885 3221 2345789999999988621 12
Q ss_pred HHHHHHHHHccCCCeEEEEEecCC
Q 012303 275 KKTVEAIVKASEYPLSIILVGVGD 298 (466)
Q Consensus 275 ~~Ti~aIv~AS~~PLSIIiVGVGd 298 (466)
. +++..+.+..+-|..||||+
T Consensus 127 ~---~~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 127 K---AVIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp H---HHHHHHHHTTEEEEEEEECH
T ss_pred H---HHHHHHHHCCCEEEEEEecc
Confidence 2 33444445789999999964
No 83
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.45 E-value=2.8e-05 Score=76.60 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=38.3
Q ss_pred CCCCCCCCCccCCCCCccc--cccCcccccchhcCC------CCcc--ccccccC
Q 012303 417 TSDNHVCPICLTDPKDMAF--GCGHQTCCGCGQDLD------LCPI--CRSFIQT 461 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l~------~CPi--CR~~I~~ 461 (466)
...+..||||++..+++|. .|||.||+.|+.... .||+ ||..+..
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3566799999999999995 999999999998542 6999 9998764
No 84
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.34 E-value=5.4e-05 Score=64.69 Aligned_cols=42 Identities=24% Similarity=0.485 Sum_probs=32.8
Q ss_pred CCCCCCCccCCCCCc------------------cc-cccCcccccchhcC----CCCcccccccc
Q 012303 419 DNHVCPICLTDPKDM------------------AF-GCGHQTCCGCGQDL----DLCPICRSFIQ 460 (466)
Q Consensus 419 e~~~CpICl~~~kd~------------------~~-pCGH~~Cc~C~~~l----~~CPiCR~~I~ 460 (466)
++..|.||++...+. ++ +|||.|+..|+... ..||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 345899999876644 22 99999999999863 47999999853
No 85
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.26 E-value=0.00019 Score=65.86 Aligned_cols=138 Identities=9% Similarity=0.206 Sum_probs=91.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCcccccCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD---~D~~ip~fGFGa~~~~~~~vF~f~~~ 201 (466)
.++++.||-|+|++ .+.++++...+-.++..|+ ++-.|-+..|+.... .+|+|+.
T Consensus 22 ~DivfvlD~S~Sm~------------------~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~- 79 (199)
T 3zqk_A 22 LDVAFVLEGSDKIG------------------EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVT---VEYPFSE- 79 (199)
T ss_dssp CEEEEEEECCTTTC------------------HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEE---EEECTTS-
T ss_pred cCEEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCccc---EEEecCC-
Confidence 58999999999985 2456777777777777775 566899999998643 2355542
Q ss_pred CCccCCHHHHHHHHHHhCCCceecCC-CChHHHHHHHHHHH-Hh-cC---CceEEEEEEeCCccccCCCcccCcCchhHH
Q 012303 202 EKFCNGFEEVLRRYRELVPHLRLAGP-TSFAPIIEMAITIV-EH-SG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEK 275 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v~LsGP-T~FapII~~a~~~v-~~-s~---~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~ 275 (466)
-...+.++++-.++ +. ..|. |+...-|+.|.+.. .. .+ +.-.++++||||...|.+.
T Consensus 80 ---~~~~~~~~~~i~~l-~~--~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~----------- 142 (199)
T 3zqk_A 80 ---AQSKGDILQRLREI-RY--QGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK----------- 142 (199)
T ss_dssp ---CCCHHHHHHHHHHC-CC--CCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC-----------
T ss_pred ---cCCHHHHHHHHHhC-cC--CCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH-----------
Confidence 12455665554442 21 2454 99999998887642 11 11 2347999999998776321
Q ss_pred HHHHHHHHccCCCeEEEEEecC-CCCCCcccccCC
Q 012303 276 KTVEAIVKASEYPLSIILVGVG-DGPWDMMREFDD 309 (466)
Q Consensus 276 ~Ti~aIv~AS~~PLSIIiVGVG-d~~f~~M~~LDd 309 (466)
++ ...+.|.-|||| +.+.+.|+++=.
T Consensus 143 -------~~-~~~v~v~~iGiG~~~~~~~L~~iA~ 169 (199)
T 3zqk_A 143 -------RL-PGDIQVVPIGVGPNANVQELERIGW 169 (199)
T ss_dssp -------CC-CTTEEEEEEEESTTCCHHHHHHHHT
T ss_pred -------HH-hCCCEEEEEEcCCCCCHHHHHHHhC
Confidence 01 256889999999 567667766643
No 86
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.25 E-value=4.7e-05 Score=62.65 Aligned_cols=40 Identities=23% Similarity=0.491 Sum_probs=31.8
Q ss_pred CCCCCCCccCCCCCccc----cccCcccccchhcC------------CCCcc--cccc
Q 012303 419 DNHVCPICLTDPKDMAF----GCGHQTCCGCGQDL------------DLCPI--CRSF 458 (466)
Q Consensus 419 e~~~CpICl~~~kd~~~----pCGH~~Cc~C~~~l------------~~CPi--CR~~ 458 (466)
+..+|+||++...+..+ +|||.||.+|.... ..||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999998776543 79999999997521 37999 9998
No 87
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.12 E-value=7.7e-05 Score=65.08 Aligned_cols=41 Identities=22% Similarity=0.502 Sum_probs=0.4
Q ss_pred CCCCCCccCCCCCc-----------------c-c-cccCcccccchhcC----CCCcccccccc
Q 012303 420 NHVCPICLTDPKDM-----------------A-F-GCGHQTCCGCGQDL----DLCPICRSFIQ 460 (466)
Q Consensus 420 ~~~CpICl~~~kd~-----------------~-~-pCGH~~Cc~C~~~l----~~CPiCR~~I~ 460 (466)
+..|.||++...+. + + +|||.|+..|+... ..||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 35899999876542 2 2 89999999999874 37999999853
No 88
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.02 E-value=0.0017 Score=58.45 Aligned_cols=137 Identities=17% Similarity=0.236 Sum_probs=86.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCC-ccceEeeCCCCCCCCcccccCCCCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDN-LIPCFGFGDASTHDQEVFSFYPDEK 203 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~-~ip~fGFGa~~~~~~~vF~f~~~~~ 203 (466)
.++++.||-|+|.+ ...++++...+..++..++.++ .+-+..|+.... .+|+|+...
T Consensus 3 ~divfvlD~S~Sm~------------------~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~---~~~~l~~~~- 60 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQ------------------PDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYK---TEFDFSDYV- 60 (179)
T ss_dssp EEEEEEEECBTTCC------------------HHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEE---EEECHHHHH-
T ss_pred ccEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCcee---EEEcCcccC-
Confidence 57999999999985 1346777777777787786554 799999997643 234443110
Q ss_pred ccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHH-HHhc----CCceEEEEEEeCCccccCCCcccCcCchhHHHHH
Q 012303 204 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITI-VEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTV 278 (466)
Q Consensus 204 ~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~-v~~s----~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti 278 (466)
.-..++.++ +.++. +.|-|+....|+.|.+. .... .+.-.++++||||..+|..+ +
T Consensus 61 ~~~~~~~~~----~~i~~--~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~-----~-------- 121 (179)
T 1mjn_A 61 KRKDPDALL----KHVKH--MLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN-----I-------- 121 (179)
T ss_dssp HHCCHHHHH----TTCCC--CCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC-----C--------
T ss_pred CHHHHHHHH----Hhccc--CCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc-----h--------
Confidence 001233222 22333 45889999999999864 2221 23457999999999886321 0
Q ss_pred HHHHHccCCCeEEEEEecCCCCC-----Cccccc
Q 012303 279 EAIVKASEYPLSIILVGVGDGPW-----DMMREF 307 (466)
Q Consensus 279 ~aIv~AS~~PLSIIiVGVGd~~f-----~~M~~L 307 (466)
.+ ..-+-|..||||+..- +.|+.+
T Consensus 122 ---~~--~~~i~i~~igvG~~~~~~~~~~~L~~i 150 (179)
T 1mjn_A 122 ---DA--AKDIIRYIIGIGKHFQTKESQETLHKF 150 (179)
T ss_dssp ---GG--GTTSEEEEEEESGGGCSHHHHHTTGGG
T ss_pred ---HH--HCCCEEEEEEccccccccccHHHHHHH
Confidence 01 2357788899997532 455555
No 89
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=97.02 E-value=0.0049 Score=66.74 Aligned_cols=162 Identities=13% Similarity=0.244 Sum_probs=103.0
Q ss_pred hcCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceEeeCCCCCC----
Q 012303 119 RAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTH---- 191 (466)
Q Consensus 119 ~~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~---yD~D~~ip~fGFGa~~~~---- 191 (466)
.+|-+ .++++||.|.|+.... + +...+..+.|++.|..+++. -.....|-+..||...+.
T Consensus 32 ~~~ke--~ivf~IDvS~SM~~~d---~--------~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~ 98 (609)
T 1jey_A 32 YSGRD--SLIFLVDASKAMFESQ---S--------EDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVN 98 (609)
T ss_dssp --CEE--EEEEEEECSGGGGCCC---S--------SSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTC
T ss_pred ccCce--EEEEEEECCHHHcCCC---C--------CCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCC
Confidence 34555 5999999999985321 0 12478999999999998875 344569999999987642
Q ss_pred CCcccccCC-CCCccCC---HHHH-----HHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCc--eEEEEEEeCCccc
Q 012303 192 DQEVFSFYP-DEKFCNG---FEEV-----LRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQ--YHVLVIIADGQVT 260 (466)
Q Consensus 192 ~~~vF~f~~-~~~~c~G---~egv-----l~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~--Y~VLlIITDG~i~ 260 (466)
..+++-+.+ +.+...- ++++ ...+...++. ...|.+...|..|+++.+..+.+ =-++++||||.-.
T Consensus 99 ~d~i~v~~~L~~~~~~~ik~l~~l~~~~~~~~~~~~~g~---~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p 175 (609)
T 1jey_A 99 FKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGH---GSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNP 175 (609)
T ss_dssp CTTEEEEEEEECCCHHHHHHHHTTSHHHHHHHHHHHHCC---SCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCT
T ss_pred CCCeEEEecCCCCCHHHHHHHHHHhhcccchhhhhhcCC---CCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCC
Confidence 122332221 1111111 1111 1122222232 45799999999999998765433 3578999999753
Q ss_pred cCCCcccCcCchhHHHHHHHHHHccCCCeEEEEEecCCCC-CC
Q 012303 261 RSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP-WD 302 (466)
Q Consensus 261 d~~d~~~~~~s~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~-f~ 302 (466)
++.-+........++.++.++-+.|.+||||..+ |+
T Consensus 176 ------~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~~~fd 212 (609)
T 1jey_A 176 ------HGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFD 212 (609)
T ss_dssp ------TTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCC
T ss_pred ------CCCchHHHHHHHHHHHHHHhcCcEEEEEecCCCCccc
Confidence 1222223456677788889999999999999753 54
No 90
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.00052 Score=55.70 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=35.5
Q ss_pred CCCCCCCCccCCC--CCccc-ccc-----CcccccchhcC------CCCccccccccCccc
Q 012303 418 SDNHVCPICLTDP--KDMAF-GCG-----HQTCCGCGQDL------DLCPICRSFIQTRIK 464 (466)
Q Consensus 418 ~e~~~CpICl~~~--kd~~~-pCG-----H~~Cc~C~~~l------~~CPiCR~~I~~~i~ 464 (466)
.+...|.||++.. .+.++ ||+ |.|-.+|+.++ ..||+||..+....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 4456899999754 23444 996 99999999865 379999999876544
No 91
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=96.88 E-value=0.00077 Score=77.80 Aligned_cols=142 Identities=18% Similarity=0.285 Sum_probs=95.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCC-CccceEeeCCCCCCCCcccccCC--C
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDED-NLIPCFGFGDASTHDQEVFSFYP--D 201 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D-~~ip~fGFGa~~~~~~~vF~f~~--~ 201 (466)
+++++.||-|+|.+ .+.++++...+..++..|+.+ -.|-+..|+.... .+|.|+. +
T Consensus 131 ~DIvfvlD~SgSm~------------------~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~---~~~~lt~~~~ 189 (1095)
T 3k6s_A 131 QDIVFLIDGSGSIS------------------SRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEEFRR 189 (1095)
T ss_dssp EEEEEEEECCTTSC------------------SHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEE---EEECSHHHHS
T ss_pred ccEEEEEcCCCCCC------------------hhHHHHHHHHHHHHHHhccccccEEEEEEECCeEE---EEecCcccCC
Confidence 68999999999984 356788888888899999866 5899999987643 2344432 1
Q ss_pred CCccCCHHHHHHHHHHhCCCc-eecCCCChHHHHHHHHHHHH-h-c---CCceEEEEEEeCCccc-cCCCcccCcCchhH
Q 012303 202 EKFCNGFEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVE-H-S---GGQYHVLVIIADGQVT-RSVDTEHGQLSSQE 274 (466)
Q Consensus 202 ~~~c~G~egvl~~Yr~~l~~v-~LsGPT~FapII~~a~~~v~-~-s---~~~Y~VLlIITDG~i~-d~~d~~~~~~s~~~ 274 (466)
.. .+ .+++..+ .+.|-|+.+.-|+.|.+.+- + . .+.-.|+|+||||..+ |.. +.
T Consensus 190 ~~---~l-------~~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~---------~~ 250 (1095)
T 3k6s_A 190 SS---NP-------LSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL---------DY 250 (1095)
T ss_dssp CS---CG-------GGGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSS---------CH
T ss_pred HH---HH-------HHHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCch---------hH
Confidence 11 11 1233334 46789999999999977542 1 1 1235799999999984 321 13
Q ss_pred HHHHHHHHHccCCCeEEEEEecCCC-----CCCcccccCC
Q 012303 275 KKTVEAIVKASEYPLSIILVGVGDG-----PWDMMREFDD 309 (466)
Q Consensus 275 ~~Ti~aIv~AS~~PLSIIiVGVGd~-----~f~~M~~LDd 309 (466)
.+. +.+|-+.-+-|..||||+. +.+.|+++-+
T Consensus 251 ~~~---a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs 287 (1095)
T 3k6s_A 251 KDV---IPMADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 287 (1095)
T ss_dssp HHH---HHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSC
T ss_pred HHH---HHHHHHCCCEEEEEecccccccccCHHHHHHHHc
Confidence 333 4444445788999999986 6666666644
No 92
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=96.48 E-value=0.0093 Score=63.88 Aligned_cols=149 Identities=15% Similarity=0.241 Sum_probs=97.4
Q ss_pred cCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccc---ccCCCCccceEeeCCCCCCC----
Q 012303 120 AGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHD---- 192 (466)
Q Consensus 120 ~Gle~~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~---~yD~D~~ip~fGFGa~~~~~---- 192 (466)
+|-. -.++++||.|.|+.... .+ .+|..+.|...|..+++ .......|-+..||...+..
T Consensus 4 ~~~k-e~iv~~iDvS~SM~~~d-----------~~-~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~ 70 (565)
T 1jey_B 4 SGNK-AAVVLCMDVGFTMSNSI-----------PG-IESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSG 70 (565)
T ss_dssp --CC-EEEEEEEECCGGGGCCB-----------TT-BCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCT
T ss_pred CCCc-eEEEEEEECChHhcccC-----------CC-CCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCcccc
Confidence 4553 26999999999985320 01 46899999999999888 36677799999999865321
Q ss_pred ----CcccccCC-CCCccCCHHHHHHHHHHhCCCceec-CCCChHHHHHHHHHHHHhc--CCce--EEEEEEeCCccccC
Q 012303 193 ----QEVFSFYP-DEKFCNGFEEVLRRYRELVPHLRLA-GPTSFAPIIEMAITIVEHS--GGQY--HVLVIIADGQVTRS 262 (466)
Q Consensus 193 ----~~vF~f~~-~~~~c~G~egvl~~Yr~~l~~v~Ls-GPT~FapII~~a~~~v~~s--~~~Y--~VLlIITDG~i~d~ 262 (466)
.+++-+.+ ..+ .. .+++.-.+ .+..+ +.|.+...|..|+++.++. +.++ -++++||||.-.-
T Consensus 71 d~~y~~i~vl~~l~~~---~~-~~l~~l~~---~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~- 142 (565)
T 1jey_B 71 GDQYQNITVHRHLMLP---DF-DLLEDIES---KIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRF- 142 (565)
T ss_dssp TTCSTTEEEEEEEECC---CH-HHHHHHHT---TCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCC-
T ss_pred ccCCCceEEeecCCCC---CH-HHHHHHHh---hccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCC-
Confidence 12211111 011 11 33333232 23333 6799999999999988765 3334 5889999997542
Q ss_pred CCcccCcCchhHHHHHHHHHHccCCCeEEE-EEecCCC
Q 012303 263 VDTEHGQLSSQEKKTVEAIVKASEYPLSII-LVGVGDG 299 (466)
Q Consensus 263 ~d~~~~~~s~~~~~Ti~aIv~AS~~PLSII-iVGVGd~ 299 (466)
+ .....+++.++.+.-+.|. +||+|.+
T Consensus 143 -----~-----~~~~~~~a~~l~~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 143 -----S-----KSQLDIIIHSLKKCDISLQFFLPFSLG 170 (565)
T ss_dssp -----C-----CTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred -----C-----HHHHHHHHHHHHhcCcEEEEEeccCCC
Confidence 1 1234556777778899999 8999864
No 93
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=96.10 E-value=0.035 Score=58.96 Aligned_cols=138 Identities=11% Similarity=0.147 Sum_probs=82.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
.+++|+||.|+|+.... . +++| .+.++.-.++-+.. -.+..+-++.|++... ...+.++
T Consensus 369 ~~v~lvvD~SgSM~~~~---~-~~~l--------~~~~~Aa~l~~~~~--~~~d~vglv~Fs~~~~----~~~~t~~--- 427 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRV---L-GSIL--------NASVVAAAMCMLVA--RTEKDSHMVAFSDEML----PCPITVN--- 427 (538)
T ss_dssp CCEEEEEECSGGGGSBS---T-TSSC--------BHHHHHHHHHHHHH--HHCSSEEEEEESSSEE----CCSCCTT---
T ss_pred ceEEEEEECccccCCCC---C-CCcH--------HHHHHHHHHHHHHh--ccCCceEEEEECCCce----EcCCCCc---
Confidence 58999999999996421 1 1112 23333222222211 2234688899986321 1233332
Q ss_pred cCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHHc
Q 012303 205 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 284 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~A 284 (466)
.++..+++.-. .+ ..|-|+++..|..+.+. ....-++|+||||..++. .-+ ..+.++.+.+.
T Consensus 428 -~~l~~~l~~l~----~~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g------~~~--~~~~l~~~~~~ 489 (538)
T 1yvr_A 428 -MLLHEVVEKMS----DI-TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVE------DVH--PATALKQYREK 489 (538)
T ss_dssp -SCHHHHHHHHT----TC-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSS------SCC--HHHHHHHHHHH
T ss_pred -ccHHHHHHHHh----cC-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCC------CCC--HHHHHHHHHHH
Confidence 24666655433 22 56889999999888764 223468899999987641 111 24555666666
Q ss_pred cCCCeEEEEEecCCCCC
Q 012303 285 SEYPLSIILVGVGDGPW 301 (466)
Q Consensus 285 S~~PLSIIiVGVGd~~f 301 (466)
.+.++.+++||||....
T Consensus 490 ~~~~v~l~~igig~~~~ 506 (538)
T 1yvr_A 490 MGIPAKLIVCAMTSNGF 506 (538)
T ss_dssp HTCCCEEEEEECSSSSE
T ss_pred hCCCcEEEEEEecCCCC
Confidence 67789999999998653
No 94
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=95.96 E-value=0.0013 Score=50.63 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=36.6
Q ss_pred CCCCCccCCCCCccc--cccCcccccchhcC----CCCccccccccCc
Q 012303 421 HVCPICLTDPKDMAF--GCGHQTCCGCGQDL----DLCPICRSFIQTR 462 (466)
Q Consensus 421 ~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l----~~CPiCR~~I~~~ 462 (466)
..|+||++..+|+++ +|||.++++|+.++ ..||+++.+++..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 589999999999996 79999999999865 3699999998653
No 95
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.91 E-value=0.0019 Score=54.99 Aligned_cols=42 Identities=26% Similarity=0.510 Sum_probs=31.8
Q ss_pred CCCCccCCCCCcc-c-cccCcccccchhc-----CCCCccccccccCcc
Q 012303 422 VCPICLTDPKDMA-F-GCGHQTCCGCGQD-----LDLCPICRSFIQTRI 463 (466)
Q Consensus 422 ~CpICl~~~kd~~-~-pCGH~~Cc~C~~~-----l~~CPiCR~~I~~~i 463 (466)
-|++|--.-+.-. + ||.|.||.+|+.. -+.||+||.+|...-
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4777865554443 3 9999999999954 458999999998643
No 96
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=94.99 E-value=0.14 Score=54.55 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=84.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
.+++|+||.|+|+.+.+. .. ....+..+.| ..++-++..-+ ..+-++.|++.... ..+.++
T Consensus 363 ~~~lv~vDvSgSM~~~~~-------~~--~~k~~~~e~A-a~la~~~~r~~--d~v~lv~Fs~~~~~----~~~~~~--- 423 (535)
T 2nvo_A 363 TRHLLALDVSGSMTCGDV-------AG--VPGLTPNMAA-AAMSLIALRTE--PDALTMGFAEQFRP----LGITPR--- 423 (535)
T ss_dssp SEEEEEECCSGGGGSCCG-------GG--CTTCCHHHHH-HHHHHHHHHHS--SEEEEEEEBSSEEE----CCCCTT---
T ss_pred ceEEEEEECCccccCCCC-------CC--CCcccHHHHH-HHHHHHHcCcC--CceEEEEECCcceE----cCCCcc---
Confidence 578999999999964110 00 1124544444 34443333322 26888999874321 122222
Q ss_pred cCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHHc
Q 012303 205 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 284 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~A 284 (466)
.++.++++. +... ..|.|+++..|+.+.+. ....-+++|||||+... |..++ .+.++...+.
T Consensus 424 -~~l~~~l~~---l~~~--~~ggTdi~~~l~~a~~~----~~~~~~vIliTD~~~~~------g~~~~--~~al~~~r~~ 485 (535)
T 2nvo_A 424 -DTLESAMQK---AQSV--SFGGTDCAQPILWAAQE----RLDVDTFVVYTDNETWA------GQVHP--TVALDQYAQK 485 (535)
T ss_dssp -CCHHHHHHH---TCCS--SBCCCCTTHHHHHHHHT----TCCCSEEEEEESSCCCC------CSSCH--HHHHHHHHHH
T ss_pred -hhHHHHHHH---HhhC--CCCCccHHHHHHHHHHh----cCCCCEEEEEeCCCccC------CCCCH--HHHHHHHHHh
Confidence 456555543 3222 36889999988776432 33467889999998764 22233 3455666666
Q ss_pred cCCCeEEEEEecCCCC
Q 012303 285 SEYPLSIILVGVGDGP 300 (466)
Q Consensus 285 S~~PLSIIiVGVGd~~ 300 (466)
.+.++-+++||||...
T Consensus 486 ~~~~~klv~i~l~~~~ 501 (535)
T 2nvo_A 486 MGRAPKLIVVGLTATE 501 (535)
T ss_dssp HSCCCEEEEEETTCSC
T ss_pred hCCCCeEEEEeccCCC
Confidence 6779999999999864
No 97
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.11 E-value=0.023 Score=58.12 Aligned_cols=46 Identities=22% Similarity=0.524 Sum_probs=34.4
Q ss_pred CCCCCCCCccCCCCC-cc--------ccccCcccccchhcC---------------CCCccccccccCcc
Q 012303 418 SDNHVCPICLTDPKD-MA--------FGCGHQTCCGCGQDL---------------DLCPICRSFIQTRI 463 (466)
Q Consensus 418 ~e~~~CpICl~~~kd-~~--------~pCGH~~Cc~C~~~l---------------~~CPiCR~~I~~~i 463 (466)
....+|.||++...+ .. ..|||.|=..|..++ ..||.||.+|+...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 456799999987655 11 169999988998642 15999999998653
No 98
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.93 E-value=0.12 Score=41.36 Aligned_cols=46 Identities=22% Similarity=0.484 Sum_probs=34.9
Q ss_pred CCCCCCCCccCCCCCccc--cccCcccccchhcC------CCCccccccccCcc
Q 012303 418 SDNHVCPICLTDPKDMAF--GCGHQTCCGCGQDL------DLCPICRSFIQTRI 463 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l------~~CPiCR~~I~~~i 463 (466)
....+|.||.+....... .|+|.|=..|+.+. ..||+||......+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 345799999998765443 89999877998743 47999999876543
No 99
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=90.10 E-value=0.09 Score=40.16 Aligned_cols=44 Identities=30% Similarity=0.582 Sum_probs=30.1
Q ss_pred CCCCCCCCccCCCCCccc-cccCc-----ccccchhcC------CCCccccccccC
Q 012303 418 SDNHVCPICLTDPKDMAF-GCGHQ-----TCCGCGQDL------DLCPICRSFIQT 461 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pCGH~-----~Cc~C~~~l------~~CPiCR~~I~~ 461 (466)
.+...|.||++...+..+ ||.+. +=..|+.+. ..||+||..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 355689999987655555 86532 222788754 479999998764
No 100
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.96 E-value=0.14 Score=43.14 Aligned_cols=50 Identities=24% Similarity=0.545 Sum_probs=38.2
Q ss_pred CCCCCCCCCCccCCCCCccccccCcccccchhcC----CCCccccccccCcccc
Q 012303 416 STSDNHVCPICLTDPKDMAFGCGHQTCCGCGQDL----DLCPICRSFIQTRIKL 465 (466)
Q Consensus 416 ~~~e~~~CpICl~~~kd~~~pCGH~~Cc~C~~~l----~~CPiCR~~I~~~i~l 465 (466)
....-..|..|+-..+..+--.-|..|..|...+ ..||||..++.++|++
T Consensus 24 s~~G~~nCKsCWf~~k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCSCCCCCCSSCSCCSSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccCcccChhhccccCCeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 3444568999998777444433588888999976 3799999999998875
No 101
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=88.61 E-value=1.3 Score=42.03 Aligned_cols=109 Identities=13% Similarity=0.176 Sum_probs=63.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceEeeCCCCCCCCcccccCCCCCc
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 204 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD~D~~ip~fGFGa~~~~~~~vF~f~~~~~~ 204 (466)
+.|.+.+|+|+|++. ..+.-++.+..|.+-|+.+..+-.|-+-+|-++. ..++++|..
T Consensus 4 vDl~fl~D~S~SM~~----------------di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~--~~~~l~lT~---- 61 (212)
T 2iue_A 4 VDLYFLMGLSGSAQG----------------HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT--FQHILKLTA---- 61 (212)
T ss_dssp EEEEEEEECCGGGTT----------------THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC--EEEEEEEES----
T ss_pred eEEEEEEeCCCcchh----------------HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc--ceecCCcCC----
Confidence 579999999999963 1355666777777777777666555544455551 123344422
Q ss_pred cCCHHHHHHHHHHhCCCceecC----CC-ChHHHHHHHH--HHHHhcCCceEEEEEEeCCccccC
Q 012303 205 CNGFEEVLRRYRELVPHLRLAG----PT-SFAPIIEMAI--TIVEHSGGQYHVLVIIADGQVTRS 262 (466)
Q Consensus 205 c~G~egvl~~Yr~~l~~v~LsG----PT-~FapII~~a~--~~v~~s~~~Y~VLlIITDG~i~d~ 262 (466)
..+ .+.+.+...+.+| |- .|.-+++.+. +.....+ .-++||++||+..+..
T Consensus 62 --d~~----~F~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~ 119 (212)
T 2iue_A 62 --DSS----QFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLA 119 (212)
T ss_dssp --CHH----HHHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCT
T ss_pred --CHH----HHHHHHhhccccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCcccc
Confidence 222 2344444455555 43 3334444332 2223344 5699999999988753
No 102
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=87.32 E-value=2.7 Score=47.69 Aligned_cols=125 Identities=17% Similarity=0.196 Sum_probs=70.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccccc--CCCCccceEeeCCCCCCCC--cc-cc--
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF--DEDNLIPCFGFGDASTHDQ--EV-FS-- 197 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~y--D~D~~ip~fGFGa~~~~~~--~v-F~-- 197 (466)
+.++++||.|+|+... .+. .....+++-..+-.++..+ ..+..|-+..|+....... .| +.
T Consensus 225 ~DIVfVLD~SGSM~~~--------~~~----~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~ 292 (893)
T 2ww8_A 225 LDVVILLDNSNSMSNI--------RNK----NARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVA 292 (893)
T ss_dssp EEEEEEEECCGGGCTT--------HHH----HCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEE
T ss_pred ccEEEEEeCCCCCCCc--------Ccc----chhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccc
Confidence 5799999999999631 000 0123444333333344333 3467899999997532100 00 00
Q ss_pred -------------------cC-CCCCcc-----CCHHHHHHHHHHhCCC----------ceecCCCChHHHHHHHHHHHH
Q 012303 198 -------------------FY-PDEKFC-----NGFEEVLRRYRELVPH----------LRLAGPTSFAPIIEMAITIVE 242 (466)
Q Consensus 198 -------------------f~-~~~~~c-----~G~egvl~~Yr~~l~~----------v~LsGPT~FapII~~a~~~v~ 242 (466)
|. ...++| ...+.+ ++-++.++. +...|-|+...-|..|+++.+
T Consensus 293 ~~~g~~~n~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i-~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~ 371 (893)
T 2ww8_A 293 DKNGKRLNDSLFWNYDQTSFTTNTKDYSYLKLTNDKNDI-VELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILT 371 (893)
T ss_dssp CTTCCEECCCTTSCTTCCEEEEECCBCCEEEEECCHHHH-HHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccCCHHHH-HHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHH
Confidence 00 001112 223333 333555654 344788999999999999987
Q ss_pred hc--CCceEEEEEEeCCccccC
Q 012303 243 HS--GGQYHVLVIIADGQVTRS 262 (466)
Q Consensus 243 ~s--~~~Y~VLlIITDG~i~d~ 262 (466)
+. ...=-++|+||||+-+.+
T Consensus 372 ~~~~~~~~kvIILLTDG~pt~~ 393 (893)
T 2ww8_A 372 QQARQNSQKVIFHITDGVPTMS 393 (893)
T ss_dssp HHSCSSSEEEEEEEESSCCSEE
T ss_pred hhcccCCCeEEEEEcCCCCCcc
Confidence 42 133468899999988753
No 103
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=82.21 E-value=0.44 Score=38.94 Aligned_cols=30 Identities=23% Similarity=0.617 Sum_probs=24.2
Q ss_pred CCCCCCCccCC-CCCcc---ccccCcccccchhc
Q 012303 419 DNHVCPICLTD-PKDMA---FGCGHQTCCGCGQD 448 (466)
Q Consensus 419 e~~~CpICl~~-~kd~~---~pCGH~~Cc~C~~~ 448 (466)
++..|.||.+. ..+++ +.|+|.+|..|...
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 45689999975 56666 39999999999875
No 104
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=69.93 E-value=2.2 Score=35.09 Aligned_cols=30 Identities=33% Similarity=0.802 Sum_probs=25.8
Q ss_pred CCCCCCCCccCCCCCccc-cc----cCcccccchh
Q 012303 418 SDNHVCPICLTDPKDMAF-GC----GHQTCCGCGQ 447 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-pC----GH~~Cc~C~~ 447 (466)
.....|-+|.+...|..| .| +|.||.-|..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 345789999999999999 88 6889988876
No 105
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=63.72 E-value=4.2 Score=39.40 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=28.0
Q ss_pred ceEEEEEEeCCccccCCCcccCcCchhHHHHHHHHHHccCCCeEEEEEecCCCC
Q 012303 247 QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP 300 (466)
Q Consensus 247 ~Y~VLlIITDG~i~d~~d~~~~~~s~~~~~Ti~aIv~AS~~PLSIIiVGVGd~~ 300 (466)
.--++++||||.-+- |. .| .++...|.+.-+-|..||||+.+
T Consensus 9 ~~k~iillTDG~~~~------g~-~p-----~~aa~~a~~~gi~v~tIGig~~~ 50 (242)
T 3rag_A 9 TIRQILVITDGCSNI------GP-DP-----VEAARRAHRHGIVVNVIGIVGRG 50 (242)
T ss_dssp CEEEEEEEESSCCCS------SS-CH-----HHHHHHHHHTTCEEEEEEECCSS
T ss_pred CccEEEEEccCCCCC------CC-CH-----HHHHHHHHHCCCEEEEEEecCCc
Confidence 346889999998652 21 22 23334456667999999998753
No 106
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=62.33 E-value=8 Score=42.65 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=31.6
Q ss_pred HHHHHHhCCCceecC----CC-ChHHHHHHHH--HHHHhcCCceEEEEEEeCCcccc
Q 012303 212 LRRYRELVPHLRLAG----PT-SFAPIIEMAI--TIVEHSGGQYHVLVIIADGQVTR 261 (466)
Q Consensus 212 l~~Yr~~l~~v~LsG----PT-~FapII~~a~--~~v~~s~~~Y~VLlIITDG~i~d 261 (466)
++.+++.+..++.+| |- -|.-|++.|. +......+..++||++||...+-
T Consensus 200 ~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~ 256 (690)
T 3fcs_B 200 VTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHI 256 (690)
T ss_dssp HHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCC
T ss_pred HHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCcccc
Confidence 355667777777766 32 3555555542 33444455689999999987663
No 107
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=54.24 E-value=15 Score=35.49 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=57.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceEeeCCCCCCCCccc-ccCC
Q 012303 125 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVF-SFYP 200 (466)
Q Consensus 125 ~nlivaIDFT~SN~~~g~~s~~~~SLH~i~~~~N~Ye~AI~~Ig~vL~~yD---~D~~ip~fGFGa~~~~~~~vF-~f~~ 200 (466)
..+++.||-|+|+. +..+.+-..+-.++..++ ....|-++.|+........+. .|..
T Consensus 135 ~~vvfLVDtSgSM~-------------------~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~ 195 (242)
T 3rag_A 135 LHLVVCLDTSASMR-------------------DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSS 195 (242)
T ss_dssp EEEEEEEECSGGGT-------------------TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEES
T ss_pred CCEEEEEECcccHH-------------------HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCC
Confidence 57999999999994 113444444444555443 567999999998643222221 3322
Q ss_pred CCCccCCHHHHHHHHHHhCCCceecCCCChHHHHHHHHHHHHhc
Q 012303 201 DEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS 244 (466)
Q Consensus 201 ~~~~c~G~egvl~~Yr~~l~~v~LsGPT~FapII~~a~~~v~~s 244 (466)
.. -+. +.++.+...|-|..++-|+.|.++.++.
T Consensus 196 ~~----~~~-------~~l~~L~agG~Tplg~AL~~A~~~~~~~ 228 (242)
T 3rag_A 196 EV----NVA-------ALEAELVARGGTPTGPAIDHAADLLLSH 228 (242)
T ss_dssp SC----CHH-------HHHHHCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred hH----HHH-------HHHhhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 21 222 2334456689999999999999987643
No 108
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=51.67 E-value=3.3 Score=32.05 Aligned_cols=40 Identities=38% Similarity=0.920 Sum_probs=24.5
Q ss_pred CCCCCCCCCccCCCCCccccccCcc-------cccchhcC--------CCCcccccc
Q 012303 417 TSDNHVCPICLTDPKDMAFGCGHQT-------CCGCGQDL--------DLCPICRSF 458 (466)
Q Consensus 417 ~~e~~~CpICl~~~kd~~~pCGH~~-------Cc~C~~~l--------~~CPiCR~~ 458 (466)
..+...|.||.... -+=.|||.+ |..|+-++ ..|-+||..
T Consensus 6 ~~d~~~C~iC~KTK--FADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 6 KGDAPTCGICHKTK--FADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SSCCCCCSSSSCSC--CCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHHH
T ss_pred cCCcchhhhhccce--eccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhhc
Confidence 35667999998421 122788874 33565433 258888764
No 109
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.69 E-value=12 Score=38.31 Aligned_cols=40 Identities=30% Similarity=0.490 Sum_probs=31.5
Q ss_pred CCCCCccCCCCCccc--cccCcccccchh--------cCCCCcccccccc
Q 012303 421 HVCPICLTDPKDMAF--GCGHQTCCGCGQ--------DLDLCPICRSFIQ 460 (466)
Q Consensus 421 ~~CpICl~~~kd~~~--pCGH~~Cc~C~~--------~l~~CPiCR~~I~ 460 (466)
..||+-...-+.++- .|.|.-|.+-.. ..+.||+|...+.
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 689999999888885 999998775432 2358999998764
No 110
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=39.13 E-value=15 Score=37.54 Aligned_cols=41 Identities=20% Similarity=0.449 Sum_probs=32.2
Q ss_pred CCCCCCccCCCCCccc--cccCcccccchh--------cCCCCcccccccc
Q 012303 420 NHVCPICLTDPKDMAF--GCGHQTCCGCGQ--------DLDLCPICRSFIQ 460 (466)
Q Consensus 420 ~~~CpICl~~~kd~~~--pCGH~~Cc~C~~--------~l~~CPiCR~~I~ 460 (466)
...||+-...-+.++- .|.|.-|.+-.. ..+.||+|...+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 3689999999888886 999998775443 2358999999875
No 111
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=38.13 E-value=13 Score=35.61 Aligned_cols=42 Identities=21% Similarity=0.494 Sum_probs=30.9
Q ss_pred CCCCCCccCCCCCccc--cccCcccccchhcC------CCCccccccccC
Q 012303 420 NHVCPICLTDPKDMAF--GCGHQTCCGCGQDL------DLCPICRSFIQT 461 (466)
Q Consensus 420 ~~~CpICl~~~kd~~~--pCGH~~Cc~C~~~l------~~CPiCR~~I~~ 461 (466)
...|.+|.+--..... .|+|.+=..|..+. ..||.|+.+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 5689999987776554 57777655787653 279999998654
No 112
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.10 E-value=13 Score=35.16 Aligned_cols=44 Identities=23% Similarity=0.582 Sum_probs=29.5
Q ss_pred CCCCCCCccCCCCCcc-----ccccCcccccchhc------------CCCCccccccccCc
Q 012303 419 DNHVCPICLTDPKDMA-----FGCGHQTCCGCGQD------------LDLCPICRSFIQTR 462 (466)
Q Consensus 419 e~~~CpICl~~~kd~~-----~pCGH~~Cc~C~~~------------l~~CPiCR~~I~~~ 462 (466)
+...|.+|...+.-.. -.||+.+|..|... .+.|-.|-..+..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~~ 223 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRK 223 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC-
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhhh
Confidence 3458999987654322 28999999999763 13587777665543
No 113
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=36.19 E-value=16 Score=28.69 Aligned_cols=30 Identities=33% Similarity=0.605 Sum_probs=22.4
Q ss_pred CCCCCCCCccCCCCCccccc-cCcccccchh
Q 012303 418 SDNHVCPICLTDPKDMAFGC-GHQTCCGCGQ 447 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~pC-GH~~Cc~C~~ 447 (466)
.+..-|.||.+..+--.+.| |-++|..|-.
T Consensus 6 ee~pWC~ICneDAtlrC~gCdgDLYC~rC~r 36 (67)
T 2d8v_A 6 SGLPWCCICNEDATLRCAGCDGDLYCARCFR 36 (67)
T ss_dssp CCCSSCTTTCSCCCEEETTTTSEEECSSHHH
T ss_pred cCCCeeEEeCCCCeEEecCCCCceehHHHHH
Confidence 45578999997755334499 8889888875
No 114
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=33.85 E-value=27 Score=38.43 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=27.7
Q ss_pred HHHHHhCCCceecC----CC-ChHHHHHHHH--HHHHhcCCceEEEEEEeCCccc
Q 012303 213 RRYRELVPHLRLAG----PT-SFAPIIEMAI--TIVEHSGGQYHVLVIIADGQVT 260 (466)
Q Consensus 213 ~~Yr~~l~~v~LsG----PT-~FapII~~a~--~~v~~s~~~Y~VLlIITDG~i~ 260 (466)
+++.+.+..++.+| |- -|.-|++.|. +...... ..++||++||...+
T Consensus 193 ~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TDa~~H 246 (687)
T 3k6s_B 193 NQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATDDGFH 246 (687)
T ss_dssp HHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECSSCCC
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECCCccc
Confidence 44455555566655 43 3555555442 3344444 67899999998765
No 115
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.17 E-value=29 Score=32.31 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=21.8
Q ss_pred CCCCCCCccCCCCCcc-----ccccCcccccchhc
Q 012303 419 DNHVCPICLTDPKDMA-----FGCGHQTCCGCGQD 448 (466)
Q Consensus 419 e~~~CpICl~~~kd~~-----~pCGH~~Cc~C~~~ 448 (466)
+...|.+|...+.-.. -.||+.+|..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4469999987654221 28999999999763
No 116
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A*
Probab=29.06 E-value=72 Score=33.19 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=61.3
Q ss_pred CccceEeeCCCCCCCCcccccCCCCCccCCHHHHHHHHHH------hCCCceecCCCChHHHHHHHHHHHHhcCCceEEE
Q 012303 178 NLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRE------LVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVL 251 (466)
Q Consensus 178 ~~ip~fGFGa~~~~~~~vF~f~~~~~~c~G~egvl~~Yr~------~l~~v~LsGPT~FapII~~a~~~v~~s~~~Y~VL 251 (466)
-.+||||||..-+. +..|+. |. .-+.+++.++.-.+ ..+.|.|..|-.. .-++...+.+++.+-. +.
T Consensus 52 is~~~W~f~~~g~~-~~~~~~-~g--~~r~~~e~~~d~~~v~~l~~~~~~v~lH~p~d~-~d~~~lk~~l~e~GL~--l~ 124 (438)
T 3m0m_A 52 VAVPSWGVGTGGTR-FARFPG-TG--EPRGIFDKLDDCAVIQQLTRATPNVSLHIPWDK-ADPKELKARGDALGLG--FD 124 (438)
T ss_dssp CBEEGGGSSBCBCS-SCBCCC-SS--CCCSHHHHHHHHHHHHHHHSCCCEEEEETTTTC-CCHHHHHHHHHHHTCE--EE
T ss_pred eeeceecccCCCCc-cccCCC-CC--CCCCHHHHHHHHHHHhcccCCCcceeecCCccH-HHHHHHHHHHHHcCCc--eE
Confidence 46999999975443 333442 22 22457766665544 3467888888754 4455556666776643 22
Q ss_pred EEEe----C--CccccCCCcccCcCc-hhH-------HHHHHHHHHccCCCeEEEEEecCCC
Q 012303 252 VIIA----D--GQVTRSVDTEHGQLS-SQE-------KKTVEAIVKASEYPLSIILVGVGDG 299 (466)
Q Consensus 252 lIIT----D--G~i~d~~d~~~~~~s-~~~-------~~Ti~aIv~AS~~PLSIIiVGVGd~ 299 (466)
-|-+ + |+... ...|.|+ ||. +..+++|..|..+....+.+-.|++
T Consensus 125 ~i~~~~f~hp~~~~~~---Y~~GnLtspD~~vR~~Ai~~lk~~Id~A~~LGa~~lv~w~GdG 183 (438)
T 3m0m_A 125 AMNSNTFSDAPGQAHS---YKYGSLSHTNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDG 183 (438)
T ss_dssp EEECCCSSCCTTCSSC---CTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCCE
T ss_pred EeecccccCchhcccc---cccCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 2222 2 11111 0112222 232 3566777778888877777766643
No 117
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=28.86 E-value=22 Score=29.54 Aligned_cols=42 Identities=29% Similarity=0.698 Sum_probs=29.4
Q ss_pred CCCCCCCccCCCC---Cc-cc----cccCcccccchhcC-----CCCcccccccc
Q 012303 419 DNHVCPICLTDPK---DM-AF----GCGHQTCCGCGQDL-----DLCPICRSFIQ 460 (466)
Q Consensus 419 e~~~CpICl~~~k---d~-~~----pCGH~~Cc~C~~~l-----~~CPiCR~~I~ 460 (466)
..+.|-||-+.-- +- +| .|+--+|+.|..-- ..||.|.++..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3469999998621 11 22 77888888887632 47999998875
No 118
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=28.77 E-value=32 Score=27.83 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=22.6
Q ss_pred CCCCCCCCccCCCCCcc-----ccccCcccccchhc
Q 012303 418 SDNHVCPICLTDPKDMA-----FGCGHQTCCGCGQD 448 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~-----~pCGH~~Cc~C~~~ 448 (466)
.+...|.+|...+.-.. -.||+.+|..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34458999998654332 28999999999763
No 119
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.84 E-value=12 Score=33.65 Aligned_cols=39 Identities=23% Similarity=0.547 Sum_probs=27.8
Q ss_pred CCCCCCccCCCCCc----c--ccccCcccccchhcC-----CCCcccccc
Q 012303 420 NHVCPICLTDPKDM----A--FGCGHQTCCGCGQDL-----DLCPICRSF 458 (466)
Q Consensus 420 ~~~CpICl~~~kd~----~--~pCGH~~Cc~C~~~l-----~~CPiCR~~ 458 (466)
+..|.+|.....-. + ..|.|.+|..|...+ ..|-+|+..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 45899999864221 2 288999999998543 478888764
No 120
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.15 E-value=22 Score=27.17 Aligned_cols=35 Identities=31% Similarity=0.765 Sum_probs=26.5
Q ss_pred CCCCCccCCCCCcc-c---cccCcccccchh----cCCCCccc
Q 012303 421 HVCPICLTDPKDMA-F---GCGHQTCCGCGQ----DLDLCPIC 455 (466)
Q Consensus 421 ~~CpICl~~~kd~~-~---pCGH~~Cc~C~~----~l~~CPiC 455 (466)
..|-.|.....+.. + .|++.||-+|-. .|-.||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 35888887765543 3 889999999975 45689998
No 121
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=25.59 E-value=36 Score=35.92 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=28.5
Q ss_pred HHHHHhCCCceecC----CCC-hHHHHHHHH--HHHHhcCCceEEEEEEeCCcccc
Q 012303 213 RRYRELVPHLRLAG----PTS-FAPIIEMAI--TIVEHSGGQYHVLVIIADGQVTR 261 (466)
Q Consensus 213 ~~Yr~~l~~v~LsG----PT~-FapII~~a~--~~v~~s~~~Y~VLlIITDG~i~d 261 (466)
+.+++.+.++..+| |-. |.-|++.|. +........-++||++||...+-
T Consensus 201 ~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~ 256 (472)
T 3t3p_B 201 TRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHI 256 (472)
T ss_dssp HHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCC
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCc
Confidence 34555555566555 433 444555443 33334444579999999987663
No 122
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=25.57 E-value=90 Score=24.70 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=22.2
Q ss_pred CCCCCCCccCCCCCcc-----ccccCcccccchhc
Q 012303 419 DNHVCPICLTDPKDMA-----FGCGHQTCCGCGQD 448 (466)
Q Consensus 419 e~~~CpICl~~~kd~~-----~pCGH~~Cc~C~~~ 448 (466)
+...|.+|...+.-.. -.||+.+|..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4468999988764332 28999999999763
No 123
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=25.25 E-value=39 Score=26.20 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=20.5
Q ss_pred CCCCCccCCCCCcc-----ccccCcccccchh
Q 012303 421 HVCPICLTDPKDMA-----FGCGHQTCCGCGQ 447 (466)
Q Consensus 421 ~~CpICl~~~kd~~-----~pCGH~~Cc~C~~ 447 (466)
..|.+|...+.-.. -.||+.+|..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 58999987654332 1899999999975
No 124
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.55 E-value=44 Score=26.43 Aligned_cols=43 Identities=21% Similarity=0.585 Sum_probs=28.9
Q ss_pred CCCCCCCccCCCCCcc-----ccccCcccccchhcC----------CCCccccccccC
Q 012303 419 DNHVCPICLTDPKDMA-----FGCGHQTCCGCGQDL----------DLCPICRSFIQT 461 (466)
Q Consensus 419 e~~~CpICl~~~kd~~-----~pCGH~~Cc~C~~~l----------~~CPiCR~~I~~ 461 (466)
+...|.+|...+.-.. -.||+.+|..|...- +.|-.|-..+..
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHH
Confidence 3458999988665332 289999999998642 257666655543
No 125
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.87 E-value=1.3e+02 Score=24.09 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=19.4
Q ss_pred CCCCCCCCCCccCCCCCccc--cccCcccc
Q 012303 416 STSDNHVCPICLTDPKDMAF--GCGHQTCC 443 (466)
Q Consensus 416 ~~~e~~~CpICl~~~kd~~~--pCGH~~Cc 443 (466)
.......|..|-....-+.| -||.+||.
T Consensus 21 ~k~~~~RC~~C~kkvgL~~f~CrCg~~FCs 50 (74)
T 1wfp_A 21 PKSTATRCLSCNKKVGVTGFKCRCGSTFCG 50 (74)
T ss_dssp TTCCCCBCSSSCCBCTTTCEECTTSCEECT
T ss_pred CcccCccchhhcCcccccceEeccCCEecc
Confidence 33445689999876555556 78888875
No 126
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.54 E-value=77 Score=25.07 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=21.5
Q ss_pred CCCCCCCccCCCCCcc-----ccccCcccccchh
Q 012303 419 DNHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 447 (466)
Q Consensus 419 e~~~CpICl~~~kd~~-----~pCGH~~Cc~C~~ 447 (466)
+...|.+|...+.-.. -.||..+|..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3458999988764332 2899999999976
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.97 E-value=37 Score=29.17 Aligned_cols=28 Identities=21% Similarity=0.500 Sum_probs=20.9
Q ss_pred CCCCCccCCCCCcc-----ccccCcccccchhc
Q 012303 421 HVCPICLTDPKDMA-----FGCGHQTCCGCGQD 448 (466)
Q Consensus 421 ~~CpICl~~~kd~~-----~pCGH~~Cc~C~~~ 448 (466)
..|.+|...+.-.. -.||+.+|..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 48999988654332 18999999999864
No 128
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=21.94 E-value=19 Score=31.61 Aligned_cols=38 Identities=26% Similarity=0.628 Sum_probs=26.6
Q ss_pred CCCCCccCCCCC----ccc--cccCcccccchhcC--------CCCcccccc
Q 012303 421 HVCPICLTDPKD----MAF--GCGHQTCCGCGQDL--------DLCPICRSF 458 (466)
Q Consensus 421 ~~CpICl~~~kd----~~~--pCGH~~Cc~C~~~l--------~~CPiCR~~ 458 (466)
..|.+|.....- ... .|.|.+|..|+... ..|-+|+..
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 489999986621 112 78888888888744 368888764
No 129
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.78 E-value=20 Score=35.73 Aligned_cols=41 Identities=22% Similarity=0.538 Sum_probs=29.1
Q ss_pred CCCCCCCCccCCCCCccc-c----cc--CcccccchhcC----CCCcccccc
Q 012303 418 SDNHVCPICLTDPKDMAF-G----CG--HQTCCGCGQDL----DLCPICRSF 458 (466)
Q Consensus 418 ~e~~~CpICl~~~kd~~~-p----CG--H~~Cc~C~~~l----~~CPiCR~~ 458 (466)
.....||||-..+.-.++ . =| |..|..|...+ ..||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 445699999999887765 2 24 44566887754 279999875
No 130
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=20.80 E-value=21 Score=35.97 Aligned_cols=41 Identities=22% Similarity=0.544 Sum_probs=0.0
Q ss_pred CCCCCCccCCCCCc-----cccccCcccccchhc-----------CCCCcccccccc
Q 012303 420 NHVCPICLTDPKDM-----AFGCGHQTCCGCGQD-----------LDLCPICRSFIQ 460 (466)
Q Consensus 420 ~~~CpICl~~~kd~-----~~pCGH~~Cc~C~~~-----------l~~CPiCR~~I~ 460 (466)
...|.+|.....-. .-.||+.+|..|... .+.|-.|-..+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 45799998755322 128999999999853 236877876554
Done!