BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012304
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WIJ|A Chain A, Solution Structure Of The Dna-Binding Domain Of Ethylene-
Insensitive3-Like3
Length = 140
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/130 (66%), Positives = 100/130 (76%), Gaps = 1/130 (0%)
Query: 175 TLQELQDTTLGSLLSALMQHCNPPQRRFPLEKGVAXXXXXXXXXXXXXXLGLPKDQGPPP 234
LQ+LQD TLGSLLS+LMQHC+PPQR++PLEKG LGLPK Q PP
Sbjct: 11 VLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQSPP- 69
Query: 235 YKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEE 294
Y+KPHDLKK WKVGVLTAVI HM PDIAKI++ VRQSKCLQDKMTAKESA WLA++NQEE
Sbjct: 70 YRKPHDLKKMWKVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEE 129
Query: 295 ALSRKLYPDS 304
+L ++ P S
Sbjct: 130 SLIQQSGPSS 139
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 96 GILKYMLKMMEV-CKAQGFVYGIIPEKGKPVTGASD-NLRAWWKEKVRFDRN 145
G L M+K++E+ C VYG+ P+KG + G SD +L W+ + + + N
Sbjct: 411 GNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYN 462
>pdb|2GLF|A Chain A, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|B Chain B, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|C Chain C, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|D Chain D, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
Length = 450
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Query: 233 PPYKKPHDLKKAWKVGVLTAVIKHMSPD------------IAKIRKLVRQSKCL 274
PPYK HDL A K+G A++K+ +A++RK++ + +
Sbjct: 333 PPYKDVHDLHNAPKLGYGVALVKYTGARGKYSTNDAHAEFVARVRKVLNEQGVI 386
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 97 ILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLRAW 135
+L LK V +AQ +P++GKP+T + R+W
Sbjct: 35 LLDICLKRATVQRAQHVFQHAVPQEGKPITNQKSSGRSW 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,817,534
Number of Sequences: 62578
Number of extensions: 470856
Number of successful extensions: 955
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 7
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)