Query 012304
Match_columns 466
No_of_seqs 95 out of 116
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 01:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03109 ETHYLENE-INSENSITIVE3 100.0 2E-149 4E-154 1139.9 25.3 301 32-335 25-334 (599)
2 PF04873 EIN3: Ethylene insens 100.0 5E-118 1E-122 877.5 0.2 347 47-427 1-354 (354)
3 PF11001 DUF2841: Protein of u 97.2 0.00075 1.6E-08 60.4 5.6 82 175-272 16-103 (126)
4 KOG4215 Hepatocyte nuclear fac 51.2 3.3 7.1E-05 43.9 -1.3 22 411-432 40-61 (432)
5 KOG3263 Nucleic acid binding p 41.2 16 0.00034 35.6 1.7 22 100-128 145-166 (196)
6 PF00843 Arena_nucleocap: Aren 40.4 15 0.00033 40.0 1.5 159 95-289 269-486 (533)
7 PHA02767 hypothetical protein; 37.0 27 0.00058 30.9 2.3 26 80-105 43-68 (101)
8 COG2091 Sfp Phosphopantetheiny 24.1 74 0.0016 31.0 3.1 36 88-126 41-78 (223)
9 PF07440 Caerin_1: Caerin 1 pr 23.3 37 0.00081 23.6 0.7 15 247-261 3-17 (24)
10 PF08648 DUF1777: Protein of u 20.8 61 0.0013 29.4 1.7 18 110-128 132-149 (180)
11 cd05014 SIS_Kpsf KpsF-like pro 20.8 1.2E+02 0.0026 24.9 3.3 34 97-130 59-93 (128)
No 1
>PLN03109 ETHYLENE-INSENSITIVE3-like3 protein; Provisional
Probab=100.00 E-value=1.8e-149 Score=1139.88 Aligned_cols=301 Identities=64% Similarity=1.115 Sum_probs=281.8
Q ss_pred cccccccCCccccCHHHHHHhhhhhHHHHHHHHhhhcccccc--ccccccccHHHHHHhHhhhhhhhHHHHHHHHHHHHh
Q 012304 32 ETAVEEDCSDEEVDVDELERRMWRDRLLLKRLKEQNKSKEGV--DSAKHRQSQEQARRKKMSRAQDGILKYMLKMMEVCK 109 (466)
Q Consensus 32 ~~~~e~~~sdeei~~eeLerRmWkDr~~Lkrlke~~~~~~~~--~~~~~~~~~eqarRKkMsRAQDgILkyMlKmMEvC~ 109 (466)
++++|+|+||||||+||||||||||||+||||||+++..+.. ...++++++||||||||+||||||||||||||||||
T Consensus 25 ~~~~~~~~sdeei~~~el~rrmwkd~~~l~rlke~~~~~~~~~~e~~~~~~~~~~arrkkm~raqdgilkymlk~me~c~ 104 (599)
T PLN03109 25 DNLTENDVSDEEIEAEDLERRMWKDRIKLKRIKERQKKLQQAALEKSKPKKISDQARRKKMSRAQDGILKYMLKLMEVCK 104 (599)
T ss_pred CCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999998885443 467889999999999999999999999999999999
Q ss_pred hccceeeecCCCCccccCCChhhHHHHhhhhccccccchhhhhhhhccCCCCCCCCCCccCCccchhhhhchhhhhhHHH
Q 012304 110 AQGFVYGIIPEKGKPVTGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGKNEDFGTVVSTPHTLQELQDTTLGSLLS 189 (466)
Q Consensus 110 AqGFVYGIIpekGKPvsGaSdnlR~WWKekVrFDrngPaAiaky~~~~~~~~~~~~~~~~~~~~h~LqeLqDtTLGSlLS 189 (466)
||||||||||||||||||||||||+||||||+|||||||||+||+++|.+.+.++.+.. +++|+||||||||||||||
T Consensus 105 a~gfvygiipekgkpvsg~sd~lr~wwk~~v~fd~~gp~ai~ky~~~~~~~~~~~~~~~--~~~~~l~~lqd~tLgslls 182 (599)
T PLN03109 105 ARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMGEAESSGN--NSQHSLQDLQDATLGSLLS 182 (599)
T ss_pred hcceeEEeccCCCCCCCCCchHHHHHHHHhcccccccHHHHHHhhhhcccccccccCCc--ccHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887765443 8999999999999999999
Q ss_pred HhhhcCCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCchhhhhhhhhhhhhhhhccCcCHHHHHHHHh
Q 012304 190 ALMQHCNPPQRRFPLEKGVAPPWWPTGTEEWWPELGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVR 269 (466)
Q Consensus 190 aLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYKKPHDLKKaWKV~VLtAVIKHmsPd~~kir~lVr 269 (466)
||||||+|||||||||||+||||||||+|+||+++|+|++++ |||||||||||||||||||||||||||||+|||+|||
T Consensus 183 almqhC~Ppqr~~plekg~~PPWWPtg~E~WW~~~g~~~~~~-pPykkphdLkK~wKv~vl~avikhmsPd~~kir~~vr 261 (599)
T PLN03109 183 SLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLPKGQS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDFDKIRRHVR 261 (599)
T ss_pred HHHhhcCChhhcCCCCCCCCCCCCCCCCcchhhhcCCCCCCC-CCCCCchhhhhHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999865 9999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhHHHHHhhhCCCCC-------CCCCCCCCCCccccCCCccccccCCCccch
Q 012304 270 QSKCLQDKMTAKESATWLAIINQEEALSRKLYPDSC-------IPASTGGSGSFIISDISDYDVEGVDNERNV 335 (466)
Q Consensus 270 qSkclqdKmTakEs~tW~~vl~qEe~l~~~l~p~~~-------~~~~~~g~~~~~~~~~~eyDV~g~~~~~~~ 335 (466)
||||||||||||||+||++||+|||+|++++..+.. |+...++....++|+++||||||+||...+
T Consensus 262 ~Sk~lqdkmtakEs~~W~~vl~~Ee~~~~~~s~DNGtS~ITe~P~g~~~~rk~~~~SSdsdYDVDg~eD~~gS 334 (599)
T PLN03109 262 QSKCLQDKMTAKESLIWLGVLNREESLIRQPSSDNGTSGITETPRGGHEDRNKDAISSDSDYDVDGLEDAPGS 334 (599)
T ss_pred hchhHHhhhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCCCccccCCCCCcCCCcccccccccCCCCC
Confidence 999999999999999999999999999999877663 333355677778999999999999998865
No 2
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=100.00 E-value=5.1e-118 Score=877.46 Aligned_cols=347 Identities=42% Similarity=0.758 Sum_probs=95.9
Q ss_pred HHHHHhhhhhHHHHHHHHhhhccc----cc-cccccccccHHHHHHhHhhhhhhhHHHHHHHHHHHHhhccceeeecCCC
Q 012304 47 DELERRMWRDRLLLKRLKEQNKSK----EG-VDSAKHRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEK 121 (466)
Q Consensus 47 eeLerRmWkDr~~Lkrlke~~~~~----~~-~~~~~~~~~~eqarRKkMsRAQDgILkyMlKmMEvC~AqGFVYGIIpek 121 (466)
|||++|||||+|+|+||++++... +. +...|..+..||+|||+|+||||||||||+||||||||+||||||||++
T Consensus 1 EElkk~~~~dq~~~r~~~~r~~~~~~~~e~a~~~~k~~~~~eq~~kr~~s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~ 80 (354)
T PF04873_consen 1 EELKKRMWKDQMPVRRLHSRKLQLMEDQEPATGAKKSNKPNEQIRKRKMSRAQDGILKYMFPEMELCNAPGFVYTIISSS 80 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhhhccChhhcchHHHHhhcccccccccccccccccCCcHHHHHhhhhhhhhhHHHHhhccccccccCceeeecCCCCC
Confidence 799999999999999999986652 22 2333556789999999999999999999999999999999999999999
Q ss_pred CccccCCChhhHHHHhhhhccccccchhhhhhhhccCCCCCCCCCCc-cCCccchhhhhchhhhhhHHHHhhhcCCCCcc
Q 012304 122 GKPVTGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGKNEDFGT-VVSTPHTLQELQDTTLGSLLSALMQHCNPPQR 200 (466)
Q Consensus 122 GKPvsGaSdnlR~WWKekVrFDrngPaAiaky~~~~~~~~~~~~~~~-~~~~~h~LqeLqDtTLGSlLSaLmqhC~PPQR 200 (466)
||||+|+|||||+||||+|+||+|||+||+||++++.+.+...++.. .....|+|++||||||||||+||||||+||||
T Consensus 81 ~k~~~~~s~slr~wwke~v~~~~ng~~~vs~~~~~~l~ls~~~~lq~~rs~~~~sl~~vpDTd~gSLL~a~~q~~~~p~~ 160 (354)
T PF04873_consen 81 GKPVEGVSPSLRAWWKEEVEFDRNGPIQVSKYDPKDLVLSGERGLQTERSSESTSLSLVPDTDLGSLLSALMQHCTPPQR 160 (354)
T ss_dssp -------------------------------------------------------STTS-HHHHHHHHHHHSSSSSS-TT
T ss_pred CCccCCcCCcccchhhhhhhcCcccccccCCcchhhhcccCCCCcccccccccccccccCCcccccccccccccCCCCcc
Confidence 99999999999999999999999999999999998888877666533 56789999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCchhhhhhhhhhhhhhhhccCcCHHHHHHHHhhhhhhhhhhhH
Q 012304 201 RFPLEKGVAPPWWPTGTEEWWPELGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTA 280 (466)
Q Consensus 201 rfPLekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYKKPHDLKKaWKV~VLtAVIKHmsPd~~kir~lVrqSkclqdKmTa 280 (466)
+|||++|++|||||||+|.||+++|+++++||||||+||||||||||+||+||||||+|+|.+||++|++|+|||+|||+
T Consensus 161 ~~~~~~~~~~Pwwp~gkE~~~~~~g~s~~~~~~~~k~p~~lkk~~k~~~L~~~ikH~~~~~~~me~seldtq~LQnK~Sk 240 (354)
T PF04873_consen 161 CFPLEKGIEPPWWPTGKELWWGELGCSKDTGPPPYKKPHDLKKAWKVSVLRAEIKHMSPTFDEMEESELDTQYLQNKMSK 240 (354)
T ss_dssp S--TTT--HHHH---S--HHHHHHT--TT--------GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--S
T ss_pred CcccccccCCCCCCCCccccccccCCcCCCCCCCccChHHhhhcccccchhhhhccCCcchHHHHHhhhhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhhhCCCCCCCCCCCCCCCccccCCCccccccCCCccchhhhhccccccccccccccccccccC
Q 012304 281 KESATWLAIINQEEALSRKLYPDSCIPASTGGSGSFIISDISDYDVEGVDNERNVEVEEIKPLEANLFNMGAMGSRDRLM 360 (466)
Q Consensus 281 kEs~tW~~vl~qEe~l~~~l~p~~~~~~~~~g~~~~~~~~~~eyDV~g~~~~~~~~~~~~kp~~~~~~n~~~~~~~~~~~ 360 (466)
+||.+|+++++|||++++.++++ +.....++..++++...+|||+|.++.....++.....
T Consensus 241 rqSfa~~s~~~qEEk~~~~v~a~--s~S~~kqsp~vt~e~~qeee~qG~~Es~i~~vq~~~~~----------------- 301 (354)
T PF04873_consen 241 RQSFAWFSNPGQEEKECRTVCAH--SRSLRKQSPKVTLECEQEEEVQGKEESKIKHVQAVSAT----------------- 301 (354)
T ss_dssp HHHHHHHHHHTTTTT-S---------------------------------------------------------------
T ss_pred hhhhhhhcccCchhhhccccCCC--cchhhccCCCccccccchhhccCccccccccccccccc-----------------
Confidence 99999999999999999999998 22223456666777888999998877553333211110
Q ss_pred CCCCCCCCccccccccchhHHhhhcCCCCCCCccC-CCcccccCCCCCCCCCCCCCCcCccccCcccc
Q 012304 361 MPPSLVPRIKGEVFETHSESIQKRRQSADEPHMTI-DQKIYTCEFTQCPYNDYHHGFLDRTSRNNHQL 427 (466)
Q Consensus 361 ~~~~~~~~~k~e~~~~~~df~~KRk~~~~e~e~~m-dqkvYTCen~qCP~Sd~~~GFlDRnsR~nHq~ 427 (466)
.+..++.||+....+..... ....|+|+++|||+|+..+||.|+|.|++|||
T Consensus 302 ---------------~~~~~v~Qrkrkpgd~a~~s~~~~srlCqssq~~gsE~eli~~Dkn~isqn~y 354 (354)
T PF04873_consen 302 ---------------NGFPVVCQRKRKPGDYAKCSIKGVSRLCQSSQCPGSETELIFADKNGISQNPY 354 (354)
T ss_dssp --------------------------------------------------------------------
T ss_pred ---------------cCCccccccCCCCCccccccccccccCCccccCCCcccccCcCCccccccCCC
Confidence 25567778874333333333 33479999999999999999999999999997
No 3
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast.
Probab=97.16 E-value=0.00075 Score=60.36 Aligned_cols=82 Identities=24% Similarity=0.624 Sum_probs=65.1
Q ss_pred hhhhhchhhhhhHHHHhhhcCCC-CccCCCCCCC--CCCCCCCCCCCCcccccCCCCCCCCCCCCCCchhhhhhhhhhhh
Q 012304 175 TLQELQDTTLGSLLSALMQHCNP-PQRRFPLEKG--VAPPWWPTGTEEWWPELGLPKDQGPPPYKKPHDLKKAWKVGVLT 251 (466)
Q Consensus 175 ~LqeLqDtTLGSlLSaLmqhC~P-PQRrfPLekG--~~PPWWPtG~E~WW~~~g~~~~~gpPPYKKPHDLKKaWKV~VLt 251 (466)
.+..||-+.--.+..|-..-=.| -|.+||-.+| ..|+|||.+ .+++-|.-|+|.-.|.+|+
T Consensus 16 ~F~~lqQ~~Ck~IAKawIK~IEPkKQ~~~PY~~g~~tkP~WWP~~----------------V~HkEPDHL~K~eRi~LLi 79 (126)
T PF11001_consen 16 AFKALQQVNCKQIAKAWIKVIEPKKQAKYPYNGGDKTKPPWWPED----------------VRHKEPDHLKKPERIRLLI 79 (126)
T ss_pred HHHHcChhHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC----------------CCcCCCCccCHHHHHHHHH
Confidence 35566777766666676666555 5899999999 599999944 7899999999999999999
Q ss_pred hhhhccCc---CHHHHHHHHhhhh
Q 012304 252 AVIKHMSP---DIAKIRKLVRQSK 272 (466)
Q Consensus 252 AVIKHmsP---d~~kir~lVrqSk 272 (466)
.+++.+.+ ..++++.+...+.
T Consensus 80 hIlr~l~~~~~t~~kL~~a~~~~~ 103 (126)
T PF11001_consen 80 HILRNLRPHGITVDKLEEATQDVR 103 (126)
T ss_pred HHHHhccccCCcHHHHHHHHHHHH
Confidence 99999877 6677777666554
No 4
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=51.15 E-value=3.3 Score=43.94 Aligned_cols=22 Identities=41% Similarity=0.833 Sum_probs=20.4
Q ss_pred CCCCCCcCccccCcccccCCCC
Q 012304 411 DYHHGFLDRTSRNNHQLNCPYR 432 (466)
Q Consensus 411 d~~~GFlDRnsR~nHq~~C~yr 432 (466)
|.+=||--|+.|.||||+|+|+
T Consensus 40 dGCKGFFRRSVrk~~~YtCRF~ 61 (432)
T KOG4215|consen 40 DGCKGFFRRSVRKNHQYTCRFN 61 (432)
T ss_pred CcchHHHHHHHHhcceeeeecc
Confidence 5678999999999999999998
No 5
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=41.19 E-value=16 Score=35.60 Aligned_cols=22 Identities=50% Similarity=0.806 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhccceeeecCCCCccccCC
Q 012304 100 YMLKMMEVCKAQGFVYGIIPEKGKPVTGA 128 (466)
Q Consensus 100 yMlKmMEvC~AqGFVYGIIpekGKPvsGa 128 (466)
-|+||| ||+ |+=--|||+|.|+
T Consensus 145 EMmk~M------Gf~-gFDtTkgkkv~g~ 166 (196)
T KOG3263|consen 145 EMMKIM------GFS-GFDTTKGKKVGGS 166 (196)
T ss_pred HHHHHh------CcC-cccCCCCccccCc
Confidence 478887 555 6778999999886
No 6
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=40.38 E-value=15 Score=40.01 Aligned_cols=159 Identities=26% Similarity=0.401 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHhhccceeeecCC----------------CCccccCCChhh--HHHHhhhhccccccchhhhhhhhc
Q 012304 95 DGILKYMLKMMEVCKAQGFVYGIIPE----------------KGKPVTGASDNL--RAWWKEKVRFDRNGPAAIAKYQAD 156 (466)
Q Consensus 95 DgILkyMlKmMEvC~AqGFVYGIIpe----------------kGKPvsGaSdnl--R~WWKekVrFDrngPaAiaky~~~ 156 (466)
+.|+|-+|+ |=++-|..-+..|- .|=|-.||--.| |+|=---|-|+...+..-
T Consensus 269 ~~iiK~~L~---vK~~e~MFv~~~pG~RNPYENlLYKlCLSGeGWPYI~SRSqI~GRAWDNT~VDl~~~p~~~~------ 339 (533)
T PF00843_consen 269 STIIKAVLK---VKRREGMFVSETPGQRNPYENLLYKLCLSGEGWPYIGSRSQIKGRAWDNTTVDLTGKPDSGP------ 339 (533)
T ss_dssp HHHHHHHHH---HHHHHT----SSSSS--HHHHHHHHHHH-SSB-TTTSBGTT--S-HHHHEEEE---------------
T ss_pred HHHHHHHHH---HHHhcCcccCCCCCCCCcHHHHHHHHhcCCCCCCceeecccccccccCCcEEeCCCCCCCCC------
Confidence 457776664 44555555555553 566777776665 889888888988765111
Q ss_pred cCCCCCCCCCCccCCccchhhhhchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCC----
Q 012304 157 HAIPGKNEDFGTVVSTPHTLQELQDTTLGSLLSALMQHCNPPQRRFPLEKGVAPPWWPTGTEEWWPELGLPKDQGP---- 232 (466)
Q Consensus 157 ~~~~~~~~~~~~~~~~~h~LqeLqDtTLGSlLSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~gp---- 232 (466)
..+..+ +.+..+..|.+.|-.. |...|+.=||-- -.|=.=.|-|.+++-
T Consensus 340 -~~p~~n----g~~~~l~~Lt~~qe~~----lk~am~~Ldp~~------------------ttWiDIEG~p~DPVElAiy 392 (533)
T PF00843_consen 340 -PPPVRN----GGNPRLSGLTESQEMQ----LKDAMEKLDPNA------------------TTWIDIEGPPNDPVELAIY 392 (533)
T ss_dssp -----------------SSS-HHHHHH----HHHHHCCS-TTS-------------------EEEEEESETTSESEEEEE
T ss_pred -CCccCC----CCCCCCCCCCHHHHHH----HHHHHHhCCCCC------------------CeeEecCCCCCCCeEEEEe
Confidence 112222 2223334455555443 445555555532 234444465555431
Q ss_pred --------CCCCCCchhhhhh-----------------hhhhhhhhhhccCcCH-------HHHHHHHhh-----hhhhh
Q 012304 233 --------PPYKKPHDLKKAW-----------------KVGVLTAVIKHMSPDI-------AKIRKLVRQ-----SKCLQ 275 (466)
Q Consensus 233 --------PPYKKPHDLKKaW-----------------KV~VLtAVIKHmsPd~-------~kir~lVrq-----Skclq 275 (466)
-=||+|||.|-.= .-|+++|||+|+-++. +-||+|.-. =|-+-
T Consensus 393 QP~sg~YiHcyR~P~D~K~FK~~SKysHGillkDl~~aqPGL~S~vi~~LP~~MVlT~QGsDDIrkLld~hGRrDiKlvD 472 (533)
T PF00843_consen 393 QPSSGNYIHCYREPHDEKQFKNQSKYSHGILLKDLENAQPGLTSAVIELLPKNMVLTCQGSDDIRKLLDMHGRRDIKLVD 472 (533)
T ss_dssp ETTTTEEEEEE---S-HHHHHHHHHHTT-B-GGGCTTB-TTHHHHHHHHS-TT-EEEESSHHHHHHHHHCTT-TTSEEEE
T ss_pred ccCCCcEEEEecCCcchhhhcccccccccccHHHHhhhccchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCCcceEEE
Confidence 1399999976421 2389999999999986 889998743 34445
Q ss_pred hhhhHHHHHHHHHH
Q 012304 276 DKMTAKESATWLAI 289 (466)
Q Consensus 276 dKmTakEs~tW~~v 289 (466)
=|||+.+|......
T Consensus 473 V~lt~eqaR~FEd~ 486 (533)
T PF00843_consen 473 VKLTSEQARKFEDQ 486 (533)
T ss_dssp ----HHHHTTTHHH
T ss_pred eecCHHHHHHHHHH
Confidence 58999988765443
No 7
>PHA02767 hypothetical protein; Provisional
Probab=37.00 E-value=27 Score=30.85 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.1
Q ss_pred ccHHHHHHhHhhhhhhhHHHHHHHHH
Q 012304 80 QSQEQARRKKMSRAQDGILKYMLKMM 105 (466)
Q Consensus 80 ~~~eqarRKkMsRAQDgILkyMlKmM 105 (466)
|.+=-.|.|.|..|-|.||||+|+..
T Consensus 43 QIk~~~k~~~~EK~~~~I~kYl~~TF 68 (101)
T PHA02767 43 QIKINMKKKEYEKAGMSILKYLVHTF 68 (101)
T ss_pred EEEehhhHHHHHHHHHHHHHHHHHHc
Confidence 44557889999999999999999864
No 8
>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism]
Probab=24.07 E-value=74 Score=31.04 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=30.1
Q ss_pred hHhhhhhhhHHHHHHHHHHHHhhcc--ceeeecCCCCcccc
Q 012304 88 KKMSRAQDGILKYMLKMMEVCKAQG--FVYGIIPEKGKPVT 126 (466)
Q Consensus 88 KkMsRAQDgILkyMlKmMEvC~AqG--FVYGIIpekGKPvs 126 (466)
+.|-.|.+++|++.|+.|--|..+. |.|| +.|||.=
T Consensus 41 r~r~l~~~~~lr~lls~~l~~~~~~~~~~~~---~~GKP~~ 78 (223)
T COG2091 41 RERFLASRLLLRALLSIALGLDPELLQISYG---ERGKPYL 78 (223)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccceeeEC---CCCCccc
Confidence 5788999999999999999998776 4444 7999963
No 9
>PF07440 Caerin_1: Caerin 1 protein; InterPro: IPR010000 This family consists of several caerin 1 proteins from Litoria species, Australian tree frogs. The caerin 1 peptides are among the most powerful of the broad-spectrum antibiotic amphibian peptides []. These peptides are excreted from amphibian skin, and can interact with and disrupt bacterial membranes, leading to the permeabilisation of the cell membrane. Caerin 1.1 forms a helix-bend-helix sturcture, where both helices are required for activity, as well as the bend region for flexibility.; GO: 0005576 extracellular region
Probab=23.31 E-value=37 Score=23.58 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=12.8
Q ss_pred hhhhhhhhhccCcCH
Q 012304 247 VGVLTAVIKHMSPDI 261 (466)
Q Consensus 247 V~VLtAVIKHmsPd~ 261 (466)
.+||-+|.||+.|..
T Consensus 3 ~~vlgsvakhvlphv 17 (24)
T PF07440_consen 3 FSVLGSVAKHVLPHV 17 (24)
T ss_pred HHHHHHHHHHhcccc
Confidence 579999999999865
No 10
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=20.82 E-value=61 Score=29.42 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=15.8
Q ss_pred hccceeeecCCCCccccCC
Q 012304 110 AQGFVYGIIPEKGKPVTGA 128 (466)
Q Consensus 110 AqGFVYGIIpekGKPvsGa 128 (466)
.-|| -|+=--|||.|.|.
T Consensus 132 ~MGf-~gF~TTKgK~v~gn 149 (180)
T PF08648_consen 132 MMGF-GGFGTTKGKKVPGN 149 (180)
T ss_pred hhcc-cccccCCCCccCCC
Confidence 3488 89999999999997
No 11
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.75 E-value=1.2e+02 Score=24.89 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhcc-ceeeecCCCCccccCCCh
Q 012304 97 ILKYMLKMMEVCKAQG-FVYGIIPEKGKPVTGASD 130 (466)
Q Consensus 97 ILkyMlKmMEvC~AqG-FVYGIIpekGKPvsGaSd 130 (466)
=-+.++++++.|+.+| .|.+|....+.|+...+|
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad 93 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSD 93 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCC
Confidence 3388999999999988 799999999998887666
Done!