Query 012304
Match_columns 466
No_of_seqs 95 out of 116
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 06:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wij_A Ethylene-insensitive3-l 100.0 1E-82 3.5E-87 560.1 2.3 138 166-304 2-139 (140)
2 3q7c_A Nucleoprotein; deddh ex 49.4 5.4 0.00019 38.4 1.3 72 219-290 60-172 (243)
3 3mwp_A Nucleoprotein; structur 35.4 13 0.00043 39.3 1.5 162 95-290 284-506 (577)
4 3h3g_B Parathyroid hormone-rel 35.1 16 0.00055 24.5 1.4 14 45-58 3-16 (24)
5 1g5h_A Mitochondrial DNA polym 22.4 20 0.00068 36.1 0.2 40 101-141 24-78 (454)
6 2eod_A TNF receptor-associated 17.6 28 0.00097 24.1 0.1 30 397-432 34-64 (66)
7 2d42_A Non-toxic crystal prote 15.5 62 0.0021 31.3 1.9 14 104-117 13-26 (249)
8 1zfd_A SWI5; DNA binding motif 15.5 35 0.0012 19.8 0.1 25 398-427 2-26 (32)
9 1zei_A Insulin, B28Asp-X-MCR; 14.4 36 0.0012 25.8 -0.0 13 104-116 15-27 (53)
10 1sp2_A SP1F2; zinc finger, tra 13.9 35 0.0012 19.7 -0.2 24 399-427 2-25 (31)
No 1
>1wij_A Ethylene-insensitive3-like 3 protein; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.140.5.1
Probab=100.00 E-value=1e-82 Score=560.11 Aligned_cols=138 Identities=71% Similarity=1.232 Sum_probs=126.5
Q ss_pred CCccCCccchhhhhchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCchhhhhh
Q 012304 166 FGTVVSTPHTLQELQDTTLGSLLSALMQHCNPPQRRFPLEKGVAPPWWPTGTEEWWPELGLPKDQGPPPYKKPHDLKKAW 245 (466)
Q Consensus 166 ~~~~~~~~h~LqeLqDtTLGSlLSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYKKPHDLKKaW 245 (466)
++++++++|+||||||||||||||||||||+|||||||||||+||||||||+|+||+++|++++|+ |||||||||||||
T Consensus 2 ~~~~~~~~h~L~~Lqd~TLgsllsaLmqhC~PPQR~~Plekg~~PPWWPtG~E~WW~~lGl~~~~~-PPYkkPhdLkKaw 80 (140)
T 1wij_A 2 SSGSSGSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQS-PPYRKPHDLKKMW 80 (140)
T ss_dssp ------CCCCSTTSCHHHHHHHHHHHSSSSSSCTTSCCTTTCCHHHHCCCSCCHHHHHHTCCTTCC-CCCCCGGGCCHHH
T ss_pred CccccccHHHHHHHHHHhHHHHHHHHHhhCCCchhcCCCCCCCCcCCCCCCCchhHHhcCCCCCCC-CCCCCchhhhHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred hhhhhhhhhhccCcCHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHhhhCCCC
Q 012304 246 KVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALSRKLYPDS 304 (466)
Q Consensus 246 KV~VLtAVIKHmsPd~~kir~lVrqSkclqdKmTakEs~tW~~vl~qEe~l~~~l~p~~ 304 (466)
||+|||||||||||||+|||+|||||||||||||||||+||++||||||+++++++|++
T Consensus 81 KV~VLtAVIKHmsPd~~kir~lVrqSk~lqdKmTakEs~~W~~vl~~Ee~~~~~~~p~~ 139 (140)
T 1wij_A 81 KVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQSGPSS 139 (140)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTTCCSHHHHHHHHHHTTTTTCSCC-----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999874
No 2
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=49.44 E-value=5.4 Score=38.42 Aligned_cols=72 Identities=25% Similarity=0.437 Sum_probs=49.2
Q ss_pred CcccccCCCCCCCC------------CCCCCCchhhhhh-----------------hhhhhhhhhhccCcCH-------H
Q 012304 219 EWWPELGLPKDQGP------------PPYKKPHDLKKAW-----------------KVGVLTAVIKHMSPDI-------A 262 (466)
Q Consensus 219 ~WW~~~g~~~~~gp------------PPYKKPHDLKKaW-----------------KV~VLtAVIKHmsPd~-------~ 262 (466)
.|=.=.|-|.+++- -=||+|||.|-.= .-|+++|||+|+-++. +
T Consensus 60 tWiDIEG~p~DPVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aqPGL~S~vi~~LP~nMVlT~QGsD 139 (243)
T 3q7c_A 60 TWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQGSD 139 (243)
T ss_dssp CEEEEESCTTSCSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCTTHHHHHHHHSCTTCEEEESSHH
T ss_pred eEEecCCCCCCCeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeChH
Confidence 45555566666531 1399999976421 1389999999999986 8
Q ss_pred HHHHHHhh-----hhhhhhhhhHHHHHHHHHHH
Q 012304 263 KIRKLVRQ-----SKCLQDKMTAKESATWLAII 290 (466)
Q Consensus 263 kir~lVrq-----SkclqdKmTakEs~tW~~vl 290 (466)
-||+|.-. =|-+-=|||+.+|......|
T Consensus 140 DIrkLld~hGRrDiKlIDV~lt~eqaR~FEd~V 172 (243)
T 3q7c_A 140 DIRKLLESQGRKDIKLIDIALSKTDSRKYENAV 172 (243)
T ss_dssp HHHHHHHHTTCTTSEEEECCCCHHHHTTTHHHH
T ss_pred HHHHHHHhcCCccceEEEeecCHHHHHHHHHHH
Confidence 89999843 34445589999887664433
No 3
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=35.42 E-value=13 Score=39.34 Aligned_cols=162 Identities=27% Similarity=0.403 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHHhhccceeeecC----------------CCCccccCCChhh--HHHHhhhhccccccchhhhhhhhc
Q 012304 95 DGILKYMLKMMEVCKAQGFVYGIIP----------------EKGKPVTGASDNL--RAWWKEKVRFDRNGPAAIAKYQAD 156 (466)
Q Consensus 95 DgILkyMlKmMEvC~AqGFVYGIIp----------------ekGKPvsGaSdnl--R~WWKekVrFDrngPaAiaky~~~ 156 (466)
++|||-+|+ |=++-|..-.-.| -.|=|-.||--.| |+|=.--|-|+...+..
T Consensus 284 ~~iiK~~L~---vK~~e~MFVs~~PG~RNPYENlLYKlCLSGeGWPYI~SRsqI~GRaWdNT~vdl~~~~~~~------- 353 (577)
T 3mwp_A 284 DGILKSILK---VKKALGMFISDTPGERNPYENILYKICLSGDGWPYIASRTSITGRAWENTVVDLESDGKPQ------- 353 (577)
T ss_dssp HHHHHHHHH---HHHHHTCCCCSCCSSCCHHHHHHHHHHHCSSBCTTTSBCTTCCSCHHHHEEECC--------------
T ss_pred HHHHHHHHH---HHHhcCceecCCCCCCChHHHHHHHHhhCCCCCcceeeccccccccccCceEecCCCCCCC-------
Confidence 467777765 4455554444444 3567777776665 88988888888776221
Q ss_pred cCCCCCCCC--CCccCCccchhhhhchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCC--
Q 012304 157 HAIPGKNED--FGTVVSTPHTLQELQDTTLGSLLSALMQHCNPPQRRFPLEKGVAPPWWPTGTEEWWPELGLPKDQGP-- 232 (466)
Q Consensus 157 ~~~~~~~~~--~~~~~~~~h~LqeLqDtTLGSlLSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~gp-- 232 (466)
..|..|++ ....++ ...|...|-. +|...|+.-+|-- ..|=.-.|-|.+++-
T Consensus 354 -~~p~rnG~~~~~~~~~-l~~L~~~qe~----~~k~~~~~ldp~~------------------ttWiDIEG~p~DPVE~A 409 (577)
T 3mwp_A 354 -KADSNNSSKSLQSAGF-TAGLTYSQLM----TLKDAMLQLDPNA------------------KTWMDIEGRPEDPVEIA 409 (577)
T ss_dssp --------------------CCCHHHHH----HHHHHGGGSCTTS------------------CEEEEEESCTTSCSEEE
T ss_pred -CCCccCcccccccCCc-ccCCCHHHHH----HHHHHHHhCCCCC------------------CeEEecCCCCCCCeEEE
Confidence 12223321 011111 2334444433 4555666666642 234444566655431
Q ss_pred ----------CCCCCCchhhhhh-----------------hhhhhhhhhhccCcCH-------HHHHHHHhh-----hhh
Q 012304 233 ----------PPYKKPHDLKKAW-----------------KVGVLTAVIKHMSPDI-------AKIRKLVRQ-----SKC 273 (466)
Q Consensus 233 ----------PPYKKPHDLKKaW-----------------KV~VLtAVIKHmsPd~-------~kir~lVrq-----Skc 273 (466)
-=|++|||.|-.= .-|+++|||+|+-++. +-||+|.-. -|-
T Consensus 410 iyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqPGL~S~vi~~LP~~mV~T~QGsdDI~kLld~hGR~DiK~ 489 (577)
T 3mwp_A 410 LYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKL 489 (577)
T ss_dssp EEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCTTHHHHHHHHSCTTCEEEESSHHHHHHHHHHTTCTTCEE
T ss_pred EeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCccceE
Confidence 1399999976421 2378999999999886 889998843 344
Q ss_pred hhhhhhHHHHHHHHHHH
Q 012304 274 LQDKMTAKESATWLAII 290 (466)
Q Consensus 274 lqdKmTakEs~tW~~vl 290 (466)
+-=|||+.+|......+
T Consensus 490 iDV~lt~eqaR~fEd~V 506 (577)
T 3mwp_A 490 IDIALSKTDSRKYENAV 506 (577)
T ss_dssp EECCCCHHHHTTTHHHH
T ss_pred EEeecCHHHHHHHHHHH
Confidence 45589999887664433
No 4
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=35.06 E-value=16 Score=24.47 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=10.7
Q ss_pred CHHHHHHhhhhhHH
Q 012304 45 DVDELERRMWRDRL 58 (466)
Q Consensus 45 ~~eeLerRmWkDr~ 58 (466)
.+.||+||||-..+
T Consensus 3 s~Q~~rRr~wL~~l 16 (24)
T 3h3g_B 3 SIQDLRRRFFLHHL 16 (26)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 47899999996543
No 5
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=22.45 E-value=20 Score=36.08 Aligned_cols=40 Identities=23% Similarity=0.642 Sum_probs=27.0
Q ss_pred HHHHHHHHhhccceee---ecCCCCccccCCC-----------hhhHH-HHhhhhc
Q 012304 101 MLKMMEVCKAQGFVYG---IIPEKGKPVTGAS-----------DNLRA-WWKEKVR 141 (466)
Q Consensus 101 MlKmMEvC~AqGFVYG---IIpekGKPvsGaS-----------dnlR~-WWKekVr 141 (466)
|-|+++.|+.+|||+. |-|-+ -+|+|.- .||.. ||++.+.
T Consensus 24 ~~~~~~l~krrgf~~~s~eiy~g~-~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~ 78 (454)
T 1g5h_A 24 REALVDLCRRRHFLSGTPQQLSTA-ALLSGCHARFGPLGVELRKNLASQWWSSMVV 78 (454)
T ss_dssp -CHHHHHHHHTTSBCCCGGGGSHH-HHHHCCSCCBCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCccccchhcccC-CCCCcceeeeCchHHHHHHHHHHHHHHHHhh
Confidence 6789999999999763 22211 3677755 48877 8887554
No 6
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.55 E-value=28 Score=24.15 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=22.6
Q ss_pred CcccccCCCCCCCCCCCCCCcCccccCccccc-CCCC
Q 012304 397 QKIYTCEFTQCPYNDYHHGFLDRTSRNNHQLN-CPYR 432 (466)
Q Consensus 397 qkvYTCen~qCP~Sd~~~GFlDRnsR~nHq~~-C~yr 432 (466)
.+.|.|.+ +|. ..|..+..+..|+.. |+.+
T Consensus 34 ~~p~~C~~-~C~-----k~f~~~~~L~~H~~~hc~~~ 64 (66)
T 2eod_A 34 RLPVACPN-QCG-----VGTVAREDLPGHLKDSCNTA 64 (66)
T ss_dssp SSEEECTT-CCS-----CCEEETTTHHHHHHTTSSSC
T ss_pred CcCccCCc-ccC-----cccccHHHHHHHHHhhcccC
Confidence 36788876 664 468888888999875 8765
No 7
>2d42_A Non-toxic crystal protein; parasporin, bacterial toxin, beta-pore-forming toxin, parasporal inclusion, hinge-bending motion; 2.07A {Bacillus thuringiensis}
Probab=15.51 E-value=62 Score=31.35 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=12.6
Q ss_pred HHHHHhhccceeee
Q 012304 104 MMEVCKAQGFVYGI 117 (466)
Q Consensus 104 mMEvC~AqGFVYGI 117 (466)
||++|+|+|+-||.
T Consensus 13 ~~~~~~~~~~ty~~ 26 (249)
T 2d42_A 13 GMQYANSHQYTYGS 26 (249)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHhhhccceecc
Confidence 68999999999984
No 8
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=15.49 E-value=35 Score=19.77 Aligned_cols=25 Identities=20% Similarity=0.590 Sum_probs=17.0
Q ss_pred cccccCCCCCCCCCCCCCCcCccccCcccc
Q 012304 398 KIYTCEFTQCPYNDYHHGFLDRTSRNNHQL 427 (466)
Q Consensus 398 kvYTCen~qCP~Sd~~~GFlDRnsR~nHq~ 427 (466)
+.|.|....|. ..|..++.+..|+.
T Consensus 2 k~~~C~~~~C~-----k~f~~~~~L~~H~~ 26 (32)
T 1zfd_A 2 RPYSCDHPGCD-----KAFVRNHDLIRHKK 26 (32)
T ss_dssp CSBCCCCTTCC-----CCBSSSHHHHHHHG
T ss_pred CCCcCcCCCCC-----CccCCHHHHHHHHH
Confidence 45778766774 45777777777764
No 9
>1zei_A Insulin, B28Asp-X-MCR; hormone, metabolic role, chemical activity, insulin mutant, cross-LINK, glucose metabolism, diabetes; 1.90A {Sus scrofa} SCOP: g.1.1.1 PDB: 6ins_E 1sju_A 2jzq_A
Probab=14.42 E-value=36 Score=25.76 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=10.6
Q ss_pred HHHHHhhccceee
Q 012304 104 MMEVCKAQGFVYG 116 (466)
Q Consensus 104 mMEvC~AqGFVYG 116 (466)
|--||..+||.|.
T Consensus 15 L~~vC~~rgf~~~ 27 (53)
T 1zei_A 15 LYLVCGERGFFYT 27 (53)
T ss_dssp HHHHHGGGCEEEE
T ss_pred HHHHHcccCeecC
Confidence 4568999999996
No 10
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=13.88 E-value=35 Score=19.71 Aligned_cols=24 Identities=17% Similarity=0.499 Sum_probs=16.1
Q ss_pred ccccCCCCCCCCCCCCCCcCccccCcccc
Q 012304 399 IYTCEFTQCPYNDYHHGFLDRTSRNNHQL 427 (466)
Q Consensus 399 vYTCen~qCP~Sd~~~GFlDRnsR~nHq~ 427 (466)
.|.|....| ...|..++.+..|+.
T Consensus 2 p~~C~~~~C-----~k~f~~~~~L~~H~~ 25 (31)
T 1sp2_A 2 PFMCTWSYC-----GKRFTRSDELQRHKR 25 (31)
T ss_dssp CCBCCSTTC-----CCBCSSHHHHHHHHT
T ss_pred CcCCcCCCC-----CcccCCHhHHHHHHH
Confidence 477766666 456777777777764
Done!