BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012305
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 444
P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 445 KKGLLLFIDEADAF 458
++FIDE DA
Sbjct: 297 APA-IIFIDELDAI 309
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE DA
Sbjct: 293 AEKNAPA-IIFIDELDAI 309
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 444
P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 445 KKGLLLFIDEADAF 458
++FIDE DA
Sbjct: 297 APA-IIFIDELDAI 309
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 444
P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 445 KKGLLLFIDEADAF 458
++FIDE DA
Sbjct: 297 APA-IIFIDELDAI 309
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE DA
Sbjct: 293 AEKNAPA-IIFIDELDAI 309
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425
+Q ++H K K P + +LFYGPPG GKT++A+ IA + ++ + G ++
Sbjct: 493 VQYPVEHPDKFL---KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549
Query: 426 L-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
+ ++ + EIFD A+++ +LF DE D+
Sbjct: 550 MWFGESEANVREIFDKARQAAP-CVLFFDELDSI 582
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE DA
Sbjct: 293 AEKNAPA-IIFIDELDAI 309
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425
+Q ++H K K P + +LFYGPPG GKT++A+ IA + ++ + G ++
Sbjct: 493 VQYPVEHPDKFL---KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549
Query: 426 L-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
+ ++ + EIFD A+++ +LF DE D+
Sbjct: 550 MWFGESEANVREIFDKARQAAP-CVLFFDELDSI 582
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKS 444
P + +L YGPPGTGKT+ AR +A ++ + + G + V + + E+F+ A ++
Sbjct: 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA-RT 300
Query: 445 KKGLLLFIDEADA 457
KK ++F DE DA
Sbjct: 301 KKACIIFFDEIDA 313
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 366 LQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 420
++R +Q L + K P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 23 VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82
Query: 421 GDVAPLG-AQAVTKIHEIFDWAKKSKKGLLLFIDEADA 457
++ + ++ + EIFD A+++ +L F DE D+
Sbjct: 83 PELLTMWFGESEANVREIFDKARQAAPCVLFF-DELDS 119
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 439
K+ P + +L YGPPGTGKT++A+ +A ++ + + G + V + + + +IF
Sbjct: 45 KVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFK 104
Query: 440 WAKKSKKGLLLFIDEADAFLCDNQD 464
AK+ K ++FIDE DA D
Sbjct: 105 LAKE-KAPSIIFIDEIDAIAAKRTD 128
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 20/141 (14%)
Query: 328 SGLLSQAMNKVIRNKTSA---GTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQ 384
S L + MN+++ N T+ AG A + +I++ PSL+ + +A
Sbjct: 95 SNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-------- 146
Query: 385 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK----IHEIFDW 440
P R +L +GPPG GKTM+A+ +A +S + ++ A L ++ V + + +F
Sbjct: 147 -PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA---ASLTSKYVGEGEKLVRALFAV 202
Query: 441 AKKSKKGLLLFIDEADAFLCD 461
A++ + ++FID+ D+ LC+
Sbjct: 203 ARELQPS-IIFIDQVDSLLCE 222
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 72/134 (53%), Gaps = 16/134 (11%)
Query: 326 PWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQA 385
P++ +LS+ N ++ + AG G EA+K + ++ P + HL K ++
Sbjct: 4 PFTAILSEKPN--VKWEDVAGLEGAKEALK---EAVILPV---KFPHLFKG------NRK 49
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKS 444
P +L YGPPGTGK+ +A+ +A ++ + ++ D V+ ++ + ++F A+++
Sbjct: 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 109
Query: 445 KKGLLLFIDEADAF 458
K ++FID+ DA
Sbjct: 110 KPS-IIFIDQVDAL 122
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG-GDVAPLGAQAVTKIHEIFDWAKKS 444
P + +L YGPPGTGKT++A+ +A G ++ G V ++ I E+F +AK+
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEH 273
Query: 445 KKGLLLFIDEADAF 458
+ ++F+DE DA
Sbjct: 274 EP-CIIFMDEVDAI 286
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL--GAQAVTKIHEIFDWAKKSK 445
+ +L GPPGTGKT++A+ IA ++ + + ++G D + G A +++ ++F+ AKK+
Sbjct: 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGA-SRVRDMFEQAKKAA 104
Query: 446 KGLLLFIDEADA 457
++FIDE DA
Sbjct: 105 P-CIIFIDEIDA 115
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 69/131 (52%), Gaps = 16/131 (12%)
Query: 329 GLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFR 388
G LS+ N ++ + AG G EA+K + ++ P + HL K ++ P
Sbjct: 16 GSLSEKPN--VKWEDVAGLEGAKEALK---EAVILPV---KFPHLFKG------NRKPTS 61
Query: 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKKG 447
+L YGPPGTGK+ +A+ +A ++ + ++ D V+ ++ + ++F A+++K
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 121
Query: 448 LLLFIDEADAF 458
++FIDE DA
Sbjct: 122 -IIFIDEVDAL 131
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425
L+ ++ L + +I + +L GPPGTGKT++AR +A ++ + + ++G D
Sbjct: 28 LKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE 87
Query: 426 L--GAQAVTKIHEIFDWAKKSKKGLLLFIDEADA 457
L G A ++ ++F A K+ ++FIDE DA
Sbjct: 88 LFVGVGA-ARVRDLFAQA-KAHAPCIVFIDEIDA 119
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 16/132 (12%)
Query: 328 SGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPF 387
S +LS+ N ++ + AG G EA+K + ++ P + HL K ++ P
Sbjct: 39 SAILSEKPN--VKWEDVAGLEGAKEALK---EAVILPV---KFPHLFKG------NRKPT 84
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+L YGPPGTGK+ +A+ +A ++ + ++ D V+ ++ + ++F A+++K
Sbjct: 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKP 144
Query: 447 GLLLFIDEADAF 458
++FID+ DA
Sbjct: 145 S-IIFIDQVDAL 155
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 16/132 (12%)
Query: 328 SGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPF 387
S +LS+ N ++ + AG G EA+K + ++ P + HL K ++ P
Sbjct: 24 SAILSEKPN--VKWEDVAGLEGAKEALK---EAVILPV---KFPHLFKG------NRKPT 69
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+L YGPPGTGK+ +A+ +A ++ + ++ D V+ ++ + ++F A+++K
Sbjct: 70 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKP 129
Query: 447 GLLLFIDEADAF 458
++FID+ DA
Sbjct: 130 S-IIFIDQVDAL 140
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 373 LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAV 431
L +A +I P R +L YGPPGTGKTM+ + +A + + + G + V +
Sbjct: 192 LVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGP 251
Query: 432 TKIHEIFDWAKKSKKGLLLFIDEADAF 458
+ ++F A+++ ++FIDE D+
Sbjct: 252 RMVRDVFRLARENAPS-IIFIDEVDSI 277
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 390 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGA-QAVTKIHEIFDWAKKSKKGL 448
+L GPPG GKT++A+ +A +SGL++ + G ++ + ++ + ++F AK S
Sbjct: 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAP-C 105
Query: 449 LLFIDEADAFLC 460
++F DE DA LC
Sbjct: 106 VIFFDEVDA-LC 116
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD----VAPLGAQAVTKIHEIFDWAKK 443
+ +L GPPGTGKT++A+ +A ++ + + M G LGA +++ ++F+ AKK
Sbjct: 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGA---SRVRDLFETAKK 101
Query: 444 SKKGLLLFIDEADAF 458
++FIDE DA
Sbjct: 102 QAPS-IIFIDEIDAI 115
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425
L+ ++ L + +I + +L GPPGTG T++AR +A ++ + + ++G D
Sbjct: 28 LKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVE 87
Query: 426 L--GAQAVTKIHEIFDWAKKSKKGLLLFIDEADA 457
L G A ++ ++F A K+ ++FIDE DA
Sbjct: 88 LFVGVGA-ARVRDLFAQA-KAHAPCIVFIDEIDA 119
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 385 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKS 444
P + +L +GPPGTGKT++ + IA +SG + ++ + K+ +
Sbjct: 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARC 174
Query: 445 KKGLLLFIDEADAFLCDNQD 464
++ ++FIDE D+ L D
Sbjct: 175 QQPAVIFIDEIDSLLSQRGD 194
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNM--------LFYGPPGTGKTMVAREIARKSGLDYAM 417
L ++I+ L +A F++M L YGPPGTGKT++AR A ++ +
Sbjct: 186 LDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245
Query: 418 MTGGDVAPL----GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
+ + + GA+ V + F AK+ K ++FIDE DA
Sbjct: 246 LAAPQLVQMYIGEGAKLV---RDAFALAKE-KAPTIIFIDELDAI 286
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKS--GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKK 443
P+R +L +GPPGTGK+ +A+ +A ++ +++ + V+ ++ + +F A++
Sbjct: 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 225
Query: 444 SKKGLLLFIDEADAFLC 460
+K ++FIDE D+ LC
Sbjct: 226 NKPS-IIFIDEIDS-LC 240
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+ ++ YGPPGTGKT++AR +A + + ++G + V + + E+F A++
Sbjct: 183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAP 242
Query: 447 GLLLFIDEADAF 458
++F+DE D+
Sbjct: 243 S-IIFMDEIDSI 253
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+ L GPPG GKT++A+ +A ++ + + M G + V +G ++ +F A +++
Sbjct: 40 KGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEA-RARA 98
Query: 447 GLLLFIDEADA 457
+++IDE DA
Sbjct: 99 PCIVYIDEIDA 109
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+ +L GPPG GKT +AR +A ++ + + +G D V ++ ++F+ AK+
Sbjct: 65 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 124
Query: 447 GLLLFIDEADA 457
++FIDE DA
Sbjct: 125 -CIVFIDEIDA 134
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 384 QAPFRNMLFYGPPGTGKTMVAREIARKS--GLDYAMMTGGDVAPLGAQAVTKIHEIFDWA 441
+ P+R +L +GPPGTGK+ +A+ +A ++ +++ + V+ ++ + +F A
Sbjct: 42 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLA 101
Query: 442 KKSKKGLLLFIDEADAFLC 460
+++K ++FIDE D+ LC
Sbjct: 102 RENKPS-IIFIDEIDS-LC 118
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+ +L GPPG GKT +AR +A ++ + + +G D V ++ ++F+ AK+
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133
Query: 447 GLLLFIDEADA 457
++FIDE DA
Sbjct: 134 -CIVFIDEIDA 143
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+ +L GPPG GKT +AR +A ++ + + +G D V ++ ++F+ AK+
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133
Query: 447 GLLLFIDEADA 457
++FIDE DA
Sbjct: 134 -CIVFIDEIDA 143
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+ +L GPPG GKT +AR +A ++ + + +G D V ++ ++F+ AK+
Sbjct: 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 109
Query: 447 GLLLFIDEADA 457
++FIDE DA
Sbjct: 110 -CIVFIDEIDA 119
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDW 440
K + P ++L +GPPG GKT +A IA + G++ + +G + G A
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAI-------L 84
Query: 441 AKKSKKGLLLFIDE 454
A ++G +LFIDE
Sbjct: 85 ANSLEEGDILFIDE 98
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDW 440
K + P ++L +GPPG GKT +A IA + G++ + +G + G A
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAI-------L 84
Query: 441 AKKSKKGLLLFIDE 454
A ++G +LFIDE
Sbjct: 85 ANSLEEGDILFIDE 98
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARK-SGLDYAMMT---------GGDVAPLGAQAV 431
+ + ++LFYGPPGTGKT +AR+ G +Y+ M G DV +
Sbjct: 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDF 100
Query: 432 TKIHEIFDWAKKSKKGLLLFIDEADAF 458
+IF SK L+ +DEADA
Sbjct: 101 ASTRQIF-----SKGFKLIILDEADAM 122
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK----IHEIFD 439
+AP + +L +GPPG GKT++AR +A + + ++ A L ++ V + +F
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISA---ASLTSKYVGDGEKLVRALFA 107
Query: 440 WAKKSKKGLLLFIDEAD 456
A+ + ++FIDE D
Sbjct: 108 VARHMQPS-IIFIDEVD 123
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDW 440
K + P ++L +GPPG GKT +A IA + G++ + +G + G A
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAI-------L 84
Query: 441 AKKSKKGLLLFIDE 454
A ++G +LFIDE
Sbjct: 85 ANSLEEGDILFIDE 98
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 371 QHLAKATANTK--IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGA 428
QHL A I +M+ +GPPGTGKT +A IAR + D ++
Sbjct: 32 QHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISA------VT 85
Query: 429 QAVTKIHEIFDWAKKSKKG---LLLFIDEADAFLCDNQD 464
V +I E + A++++ +LF+DE F QD
Sbjct: 86 SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQD 124
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGA------QAVTKIHEIFDW-A 441
N+L GP G+GKT++A+ +A+ + A+ + G +T++ + DW
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 442 KKSKKGLLLFIDEAD 456
+K++KG ++FIDE D
Sbjct: 134 QKAQKG-IVFIDEID 147
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP--LGAQAVTKIHEIFDWAKK 443
P + ++ YG PGTGKT++A+ +A ++ + + G ++ LG +IF A +
Sbjct: 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG-DGPRLCRQIFKVAGE 273
Query: 444 SKKGLLLFIDEADAF 458
+ ++FIDE DA
Sbjct: 274 NAPS-IVFIDEIDAI 287
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 424
N+L G PG GKT + +E+A KSGL Y + GD+A
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKY--INVGDLA 39
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 424
N+L G PG GKT + +E+A KSGL Y + GD+A
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKY--INVGDLA 46
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG---GDVAPLGAQAVTKIHEIFD 439
H+ +N+L GP G GKT +AR +A+ + + + +V +G + + I ++ D
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
Query: 440 WAKKSKKGL----LLFIDEADAFLCDNQDF 465
A + + ++FIDE D +C ++
Sbjct: 106 SAGGAIDAVEQNGIVFIDEIDK-ICKKGEY 134
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 423
FR + YGPPG GKT A +A++ G D DV
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 389 NMLFYGPPGTGKTMVAREIARKSGL-----DYAMMTGGDVAPLGAQAVTKIHEIFDWAKK 443
++LF GPPGTGKT A +AR ++ M D G V H+I ++A+
Sbjct: 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD--ERGIDVVR--HKIKEFART 95
Query: 444 SKKG----LLLFIDEADAFLCDNQ 463
+ G ++F+DEADA D Q
Sbjct: 96 APIGGAPFKIIFLDEADALTADAQ 119
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 389 NMLFYGPPGTGKTMVAREIARKSGL-----DYAMMTGGDVAPLGAQAVTKIHEIFDWAKK 443
++LF GPPGTGKT A +AR ++ M D G V H+I ++A+
Sbjct: 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD--ERGIDVVR--HKIKEFART 95
Query: 444 SKKG----LLLFIDEADAFLCDNQ 463
+ G ++F+DEADA D Q
Sbjct: 96 APIGGAPFKIIFLDEADALTADAQ 119
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDV 423
R +L GPPGTGKT +A IA++ G + + M G +V
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 382 IHQAPFRNMLFYGPPGTGKT 401
+ A +MLFYGPPGTGKT
Sbjct: 53 LKSANLPHMLFYGPPGTGKT 72
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418
DI+ + +R++H K + ++LF GPPG GKT A +AR+ +
Sbjct: 26 DIVGQEHIVKRLKHYVKTGSMP--------HLLFAGPPGVGKTTAALALARELFGENWRH 77
Query: 419 TGGDVAPLGAQAVTKIHE-IFDWAKKSKKG----LLLFIDEADAFLCDNQ 463
++ + + I E + ++A+ G ++F+DEADA D Q
Sbjct: 78 NFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ 127
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 24/125 (19%)
Query: 332 SQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNML 391
S MN +I+ PV + ++G++ L + T N+ + P ++L
Sbjct: 28 SYIMNGIIK------WGDPVTRVLDDGEL------------LVQQTKNS--DRTPLVSVL 67
Query: 392 FYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK---IHEIFDWAKKSKKGL 448
GPP +GKT +A +IA +S + + D +G K + +IFD A KS+
Sbjct: 68 LEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDAYKSQLSC 126
Query: 449 LLFID 453
++ D
Sbjct: 127 VVVDD 131
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 332 SQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNML 391
S MN +I+ PV + ++G++ L + T N+ + P ++L
Sbjct: 29 SYIMNGIIK------WGDPVTRVLDDGEL------------LVQQTKNS--DRTPLVSVL 68
Query: 392 FYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK---IHEIFDWAKKSKKGL 448
GPP +GKT +A +IA +S + + D +G K + +IFD A KS+
Sbjct: 69 LEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDAYKSQLSC 127
Query: 449 LLFIDEADAFL 459
++ +D+ + L
Sbjct: 128 VV-VDDIERLL 137
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG---GDVAPLGAQAVTKIHEIFD 439
H+ +N+L GP G GKT +AR +A+ + + + +V +G + + I ++ D
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
Query: 440 WAKK 443
A K
Sbjct: 106 SAMK 109
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 367 QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 423
+R +++LA TK + P + GPPG GKT +A+ IA+ G + ++ G V
Sbjct: 91 ERILEYLA-VQKLTKSLKGPI--LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG---GDVAPLGAQAVTKIHEIFD 439
H+ +N+L GP G GKT +AR +A+ + + + +V +G + + I ++ D
Sbjct: 46 HEVTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
Query: 440 WAKK 443
A K
Sbjct: 106 SAXK 109
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG---GDVAPLGAQAVTKIHEIFD 439
H+ +N+L GP G GKT +AR +A+ + + + +V +G + + I ++ D
Sbjct: 45 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 104
Query: 440 WAKK 443
A K
Sbjct: 105 AAVK 108
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG---GDVAPLGAQAVTKIHEIFD 439
H+ +N+L GP G GKT +AR +A+ + + + +V +G + + I ++ D
Sbjct: 52 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 111
Query: 440 WAKK 443
A K
Sbjct: 112 AAVK 115
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG---GDVAPLGAQAVTKIHEIFD 439
H+ +N+L GP G GKT +AR +A+ + + + +V +G + + I ++ D
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
Query: 440 WAKK 443
A K
Sbjct: 106 AAVK 109
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGA------QAVTKIHEIFDW-A 441
N+L GP G+GKT++A +AR + + M + G + K+ + D+
Sbjct: 53 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 112
Query: 442 KKSKKGLLLFIDEAD 456
+K+++G +++ID+ D
Sbjct: 113 QKAQRG-IVYIDQID 126
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGA------QAVTKIHEIFDW-A 441
N+L GP G+GKT++A +AR + + M + G + K+ + D+
Sbjct: 53 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 112
Query: 442 KKSKKGLLLFIDEAD 456
+K+++G +++ID+ D
Sbjct: 113 QKAQRG-IVYIDQID 126
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 26/88 (29%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIA---------RKSGL------DYAMMTGGDVAPLG 427
H+ P +M F G PGTGKT VA ++A RK L D G AP
Sbjct: 63 HETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAP-- 120
Query: 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEA 455
K E+ K G +LFIDEA
Sbjct: 121 -----KTKEVL----KRAMGGVLFIDEA 139
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDV 423
R +L GPPGTGKT +A IA++ G + + G +V
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEV 115
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 26/88 (29%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIA---------RKSGL------DYAMMTGGDVAPLG 427
H+ P +M F G PGTGKT VA ++A RK L D G AP
Sbjct: 56 HETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAP-- 113
Query: 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEA 455
K E+ K G +LFIDEA
Sbjct: 114 -----KTKEVL----KRAMGGVLFIDEA 132
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 394 GPPGTGKTMVAREIARKSGLDY 415
GP GTGK+ VA+E+AR+ G Y
Sbjct: 11 GPSGTGKSSVAKELARQLGASY 32
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 32.0 bits (71), Expect = 0.84, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSK-- 445
R ++ GPPG+GKTM+ R S L + ++ +H ++ SK
Sbjct: 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGL 1327
Query: 446 --------KGLLLFIDE 454
K L+LF DE
Sbjct: 1328 TLLPKSDIKNLVLFCDE 1344
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 31.6 bits (70), Expect = 0.90, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSK-- 445
R ++ GPPG+GKTM+ R S L + ++ +H ++ SK
Sbjct: 1049 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGL 1108
Query: 446 --------KGLLLFIDE 454
K L+LF DE
Sbjct: 1109 TLLPKSDIKNLVLFCDE 1125
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Query: 390 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV--------APLGAQA 430
++F GPPG GK A+ +A++ G + ++ GD+ PLG +A
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKA 49
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 375 KATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
+A A K P + LF GP G GKT +A+ +A
Sbjct: 576 RARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 609
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYA 416
P R+++ G G+GKT +A +A ++GL++A
Sbjct: 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIA 408
P + +F GP G GKT +AR +A
Sbjct: 520 PIGSFIFLGPTGVGKTELARALA 542
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 333 QAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLF 392
QA+ K R+ T+ AG ++ + ++R IQ L++ T N N +
Sbjct: 3 QALEKYSRDLTALARAGKLDPVIGR-----DTEIRRAIQILSRRTKN---------NPIL 48
Query: 393 YGPPGTGKTMVAREIARK 410
G PG GKT + +A K
Sbjct: 49 LGDPGVGKTAIVEGLAIK 66
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDY 415
RN+ GP G GK+ + R++A++ +++
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEF 32
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 16/68 (23%)
Query: 348 AGPVEAIKNNGDIILHPSL---QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVA 404
A P E I+ G+ HP + +R I +AK+ +AP +L G GTGK +VA
Sbjct: 123 APPQEEIEFVGE---HPKILEIKRLIPKIAKS-------KAP---VLITGESGTGKEIVA 169
Query: 405 REIARKSG 412
R I R SG
Sbjct: 170 RLIHRYSG 177
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 26/88 (29%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIA---------RKSGL------DYAMMTGGDVAPLG 427
H+ P + F G PGTGKT VA + A RK L D G AP
Sbjct: 63 HETPTLHXSFTGNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAP-- 120
Query: 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEA 455
K E+ K G +LFIDEA
Sbjct: 121 -----KTKEVL----KRAXGGVLFIDEA 139
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 375 KATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
+A A K P + LF GP G GKT +A+ +A
Sbjct: 35 RARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 68
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 375 KATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
+A A K P + LF GP G GKT +A+ +A
Sbjct: 32 RARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 65
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 389 NMLFYGPPGTGKTMVAREIARK 410
N L YG GTGKT VAR + R+
Sbjct: 46 NALLYGLTGTGKTAVARLVLRR 67
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLD 414
P + LF GP G GKT V ++++ G++
Sbjct: 487 PVGSFLFAGPTGVGKTEVTVQLSKALGIE 515
>pdb|4EFP|A Chain A, Bombyx Mori Lipoprotein 7 Isolated From Its Natural Source
At 1.33 A Resolution
pdb|4EFP|B Chain B, Bombyx Mori Lipoprotein 7 Isolated From Its Natural Source
At 1.33 A Resolution
pdb|4EFQ|A Chain A, Bombyx Mori Lipoprotein 7 - Platinum Derivative At 1.94 A
Resolution
pdb|4EFQ|B Chain B, Bombyx Mori Lipoprotein 7 - Platinum Derivative At 1.94 A
Resolution
pdb|4EFR|A Chain A, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|B Chain B, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|C Chain C, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|D Chain D, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
Length = 239
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 239 NRRMLIERINGEREKWLA---AINTTFSHIEEGVRSLLT------------DRNKLVMTV 283
N ++ + +N ER ++L N H+ GV S+ + D++ L
Sbjct: 137 NNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQXYLQPAKYDKDNLFYIY 196
Query: 284 GGATALAAGIYTTRE--GARVTWGYVNRILGQP 314
+ A + T E G R+ WGY R++G P
Sbjct: 197 NREYSKALTLSRTLETSGNRMAWGYNGRVIGSP 229
>pdb|3PUB|A Chain A, Crystal Structure Of The Bombyx Mori Low Molecular Weight
Lipoprotein 7 (Bmlp7)
pdb|3PUB|B Chain B, Crystal Structure Of The Bombyx Mori Low Molecular Weight
Lipoprotein 7 (Bmlp7)
Length = 251
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 239 NRRMLIERINGEREKWLA---AINTTFSHIEEGVRSLLT------------DRNKLVMTV 283
N ++ + +N ER ++L N H+ GV S+ + D++ L
Sbjct: 138 NNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIY 197
Query: 284 GGATALAAGIYTTRE--GARVTWGYVNRILGQP 314
+ A + T E G R+ WGY R++G P
Sbjct: 198 NREYSKALTLSRTLETSGNRMAWGYNGRVIGSP 230
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLD--YAMMTGGDVAPL 426
R +L G PGTGKT +A +A+ G D + + G ++ L
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111
>pdb|4I96|A Chain A, Crystal Structure Of The N-terminal Two Domains Of The
Skeletal Muscle Ryanodine Receptor (rabbit Ryr1)
Residues 217-536
Length = 320
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 275 DRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKF 325
D+ +LV GGA A E R++W + GQP IR + G++
Sbjct: 24 DQRRLVYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLRIRHVTTGRY 74
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 371 QHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQA 430
+ L+ A K+ ++L GPPG GKT +A IA + + + +G + G A
Sbjct: 35 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94
Query: 431 VTKIHEIFDWAKKSKKGLLLFIDE 454
++G +LFIDE
Sbjct: 95 A--------ILTSLERGDVLFIDE 110
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 371 QHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQA 430
+ L+ A K+ ++L GPPG GKT +A IA + + + +G + G A
Sbjct: 35 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94
Query: 431 VTKIHEIFDWAKKSKKGLLLFIDE 454
++G +LFIDE
Sbjct: 95 A--------ILTSLERGDVLFIDE 110
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 371 QHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQA 430
+ L+ A K+ ++L GPPG GKT +A IA + + + +G + G A
Sbjct: 35 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94
Query: 431 VTKIHEIFDWAKKSKKGLLLFIDE 454
++G +LFIDE
Sbjct: 95 A--------ILTSLERGDVLFIDE 110
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 394 GPPGTGKTMVAREIARKSGLDYAMMTG 420
GP G GKT+V +IA+ S +D + G
Sbjct: 239 GPFGAGKTVVQHQIAKWSDVDLVVYVG 265
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 371 QHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQA 430
+ L+ A K+ ++L GPPG GKT +A IA + + + +G + G A
Sbjct: 35 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94
Query: 431 VTKIHEIFDWAKKSKKGLLLFIDE 454
++G +LFIDE
Sbjct: 95 AI--------LTSLERGDVLFIDE 110
>pdb|3N2T|A Chain A, Structure Of The Glycerol Dehydrogenase Akr11b4 From
Gluconobacter Oxydans
Length = 348
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 86 FNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQ 145
F SR AR ++ + R+ +D+E++H+ ++ +D E R+L + H Q +
Sbjct: 116 FRDSRPARIRKEVEDSLRRLRVETIDLEQIHWPDDKTPID-ESARELQKLH-----QDGK 169
Query: 146 ARAQGLRN 153
RA G+ N
Sbjct: 170 IRALGVSN 177
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 371 QHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQA 430
+ L+ A K+ ++L GPPG GKT +A IA + + + +G + G A
Sbjct: 35 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94
Query: 431 VTKIHEIFDWAKKSKKGLLLFIDE 454
++G +LFIDE
Sbjct: 95 A--------ILTSLERGDVLFIDE 110
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 345 AGTAGPVEAI-----KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTG 399
GT PVE + K N + ++H + I + + ++ A F F+GP G G
Sbjct: 152 VGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVG 211
Query: 400 KTMV 403
T +
Sbjct: 212 ITYI 215
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 391 LFYGPPGTGKTMVAREIARKSGLDY 415
+ GPPG+GK V + IA+ GL +
Sbjct: 31 VILGPPGSGKGTVCQRIAQNFGLQH 55
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 391 LFYGPPGTGKTMVAREIARKSGLDY 415
+ GPPG+GK V + IA+ GL +
Sbjct: 9 VILGPPGSGKGTVCQRIAQNFGLQH 33
>pdb|2OFI|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I
(Tag) Bound To Dna3MA
Length = 184
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 266 EEGVRSLLTD------RNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRE 319
EE V LL + R K+ + A A A A W +V+ GQP + +
Sbjct: 73 EEDVERLLQNTGIIRHRGKIQAIISNARAWLAXEQNGESFADFVWSFVD---GQPQITQA 129
Query: 320 SSIGKFPWSGLLSQAMNKVIRNK 342
+S+ K P S S A+ K ++ +
Sbjct: 130 ASLDKIPTSTPASDALAKALKKR 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,981,308
Number of Sequences: 62578
Number of extensions: 407939
Number of successful extensions: 1785
Number of sequences better than 100.0: 150
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1644
Number of HSP's gapped (non-prelim): 183
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)