BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012305
(466 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NVR9|ATAD3_XENTR ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis
GN=atad3 PE=2 SV=1
Length = 594
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/411 (38%), Positives = 233/411 (56%), Gaps = 61/411 (14%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE + SRHA+EA ++ + QE+T E + YEA Q+ E+
Sbjct: 44 SNFDPTGLERAAKAARELDQSRHAKEALNLAKVQEETLQLEQQSKIKEYEAAVEQLKNEQ 103
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QEES
Sbjct: 104 IRVQAEERRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEESVQ 160
Query: 186 RKEQARRSTEE------------QIQAQQRL---TEKERAEIERETIRVKAMAEAEGRAH 230
++E R++T E +I+A+ R E+E A+I RE IR+KA
Sbjct: 161 KQEAMRKATVEHEMELRHKNEMLRIEAEARARAKVERENADIIRENIRLKAA-------- 212
Query: 231 EAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALA 290
+H R+ L +I T + EG R+ ++D +K+ TV G + LA
Sbjct: 213 ------EH------------RQTVLESIKTAGTVFGEGFRAFISDWDKVTATVAGLSLLA 254
Query: 291 AGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQA--MNKVIRNKTSAGTA 348
GIYT + V Y+ LG+PSL+R++S +F + + ++K + +K
Sbjct: 255 VGIYTAKNATGVAGRYIEARLGKPSLVRDTS--RFTVAEAVKHPVKISKRLLSKIQDALE 312
Query: 349 GPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
G +IL P L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A
Sbjct: 313 G----------VILSPKLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLA 362
Query: 409 RKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL 459
SG+DYA+MTGGDVAP+G + VT +H++FDWA SK+GLLLF+DEADAFL
Sbjct: 363 MHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFL 413
>sp|Q58E76|ATD3A_XENLA ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis
GN=atad3-a PE=2 SV=1
Length = 593
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 158/409 (38%), Positives = 229/409 (55%), Gaps = 57/409 (13%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE + SRHA+EA ++ + QE+T E + YEA Q+ E+
Sbjct: 44 SNFDPTGLERAAKAARELDQSRHAKEAINLAKVQEETLQMEQQAKIKEYEAAVEQLKNEQ 103
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QE+S
Sbjct: 104 IRVQAEERRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEDSVQ 160
Query: 186 RKEQARRSTEE------------QIQAQQRL---TEKERAEIERETIRVKAMAEAEGRAH 230
++E RR+T E +I+A+ R E+E A+I RE IR+KA
Sbjct: 161 KQEAMRRATVEHEMELRHKNEMLRIEAEARAQAKVERENADIIREQIRLKAA-------- 212
Query: 231 EAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALA 290
+H R+ L +I T + EG R+ ++D +K+ TV G T LA
Sbjct: 213 ------EH------------RQTVLESIKTAGTVFGEGFRTFISDWDKVTATVAGLTLLA 254
Query: 291 AGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGP 350
G+YT + V Y+ LG+PSL+R++S + + K + +K G
Sbjct: 255 VGVYTAKNATGVAGRYIEARLGKPSLVRDTSRITVAEAVKHPIKITKRLYSKIQDALEG- 313
Query: 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410
+IL P L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A
Sbjct: 314 ---------VILSPRLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMH 364
Query: 411 SGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL 459
SG+DYA+MTGGDVAP+G + VT +H++FDWA SK+GLLLF+DEADAFL
Sbjct: 365 SGMDYAIMTGGDVAPMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFL 413
>sp|Q6PAX2|ATD3B_XENLA ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis
GN=atad3-b PE=2 SV=1
Length = 593
Score = 246 bits (627), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 152/394 (38%), Positives = 224/394 (56%), Gaps = 27/394 (6%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE + SRHA+EA ++ + QE+T E + YEA Q+ E+
Sbjct: 44 SNFDPTGLERAAKAARELDQSRHAKEALNLAKVQEETLQMEQQAKIKEYEAAVEQIKNEQ 103
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R +EE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QEES
Sbjct: 104 IRVQSEEKRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEESVQ 160
Query: 186 RKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIE 245
++E R++T E E+ + ++ AEA RA + D R +
Sbjct: 161 KQEAMRKATVEH-----------EMELRHKNDMLRIEAEAHARAKVERENADIIREQIRL 209
Query: 246 RINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWG 305
+ R+ L +I T + EG R+ ++D +K+ TV G T LA G+YT + G V
Sbjct: 210 KAAEHRQTVLESIKTAGTVFGEGFRTFISDWDKVTATVAGLTLLAVGVYTAKNGTGVAGR 269
Query: 306 YVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPS 365
Y+ LG+PSL+R++S + ++K I +K G +IL P
Sbjct: 270 YIEARLGKPSLVRDTSRITVVEAIKHPIKISKRIFSKIQDALEG----------VILSPR 319
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425
L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A S +DYA+MTGGDVAP
Sbjct: 320 LEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSSMDYAIMTGGDVAP 379
Query: 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL 459
+G + VT +H++FDWA SK+GLLLF+DEADAFL
Sbjct: 380 MGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFL 413
>sp|Q20748|ATAD3_CAEEL ATPase family AAA domain-containing protein 3 OS=Caenorhabditis
elegans GN=atad-3 PE=3 SV=2
Length = 595
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 156/398 (39%), Positives = 228/398 (57%), Gaps = 39/398 (9%)
Query: 71 FDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQR 130
FD ALERAAKA R+ +A+EA ++ R QE TR E++ E EA + + E R
Sbjct: 47 FDSTALERAAKAARDLEKFPNAKEALELSRMQEVTRQKEVENETKKIEAQLANMKSEHIR 106
Query: 131 KLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQA 190
EE R + ++ + +D+LARKR + + + R E ++ QEES ++EQ
Sbjct: 107 VAEEERRKTLGEETKHAHSRAEYQDQLARKRAEEELAMKARMQEESLRKQEESVKKQEQL 166
Query: 191 RRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGR---AHEAKLTEDHNRRMLIERI 247
R+ T E A + E E+ + E R +A A + R + KL E+ NR+ +IE+I
Sbjct: 167 RKQTIEHELALKHKYELEKIDAE---TRARAKAARDNRDVNLEQMKLHEEENRKTVIEKI 223
Query: 248 NGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYV 307
T+ I G+ L D+ K+ VGG TALA G YT + G VT Y+
Sbjct: 224 K-----------TSGELIGSGLNQFLNDKTKIAAAVGGLTALAVGWYTAKRGTGVTARYI 272
Query: 308 NRILGQPSLIRESS------IGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDII 361
LG+PSL+RE+S + K P + Q M + ++ P+ NG ++
Sbjct: 273 ESRLGKPSLVRETSRITPLEVLKHPIKSV--QMMTRQKKD--------PL-----NG-VV 316
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421
L P+L+RR++ +A T+NTK + FRN++FYGPPGTGKT+ A+ +A+ SGLDYA++TGG
Sbjct: 317 LPPALERRLRDIAITTSNTKRNNGLFRNVMFYGPPGTGKTLFAKSLAQHSGLDYAVLTGG 376
Query: 422 DVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL 459
D+APLG V+ IH++FDWA KS+KGL++FIDEADAFL
Sbjct: 377 DIAPLGRDGVSAIHKVFDWASKSRKGLIVFIDEADAFL 414
>sp|A7YWC4|ATAD3_BOVIN ATPase family AAA domain-containing protein 3 OS=Bos taurus
GN=ATAD3 PE=2 SV=1
Length = 586
Score = 239 bits (609), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 153/394 (38%), Positives = 227/394 (57%), Gaps = 27/394 (6%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE SRHA+EA + + QEQT E + YEA Q+ ++
Sbjct: 47 SNFDPTGLERAAKAARELEHSRHAKEALSLAQMQEQTLQLEHQAKLKEYEAAVEQLKGDQ 106
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES
Sbjct: 107 IRVQAEERRKTLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQ 163
Query: 186 RKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIE 245
++E RR+T E+ + E R E E A+ + +L +R+ ++E
Sbjct: 164 KQEALRRATVEREMELRHKNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTILE 223
Query: 246 RINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWG 305
+I T + EG R+ +TD +K+ TV G T LA GIY+ + V
Sbjct: 224 -----------SIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGIYSAKNATSVAGR 272
Query: 306 YVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPS 365
Y+ LG+PSL+RE+S + +A+ I+ + P +A++ ++L PS
Sbjct: 273 YIEARLGKPSLVRETS------RITVLEALRHPIQVSRRL-LSKPQDALEG---VVLSPS 322
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425
L+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP
Sbjct: 323 LEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAP 382
Query: 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL 459
+G VT +H++FDWA S++GLLLF+DEADAFL
Sbjct: 383 MGRDGVTAMHKVFDWASTSRRGLLLFVDEADAFL 416
>sp|Q5T9A4|ATD3B_HUMAN ATPase family AAA domain-containing protein 3B OS=Homo sapiens
GN=ATAD3B PE=1 SV=1
Length = 648
Score = 236 bits (601), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 155/394 (39%), Positives = 234/394 (59%), Gaps = 27/394 (6%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE SR+A+EA ++ + QEQT E + YEA Q+ E+
Sbjct: 48 SNFDPTGLERAAKAARELEHSRYAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQ 107
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES
Sbjct: 108 IRAQAEERRKTLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQ 164
Query: 186 RKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIE 245
++E RR+T ++ + L K E +RV+ EA RA + D R +
Sbjct: 165 KQEAMRRAT---VEREMELRHKN------EMLRVET--EARARAKAERENADIIREQIRL 213
Query: 246 RINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWG 305
+ + R+ L +I T + EG R+ +TDR+K+ TV G T LA G+Y+ + VT
Sbjct: 214 KASEHRQTVLESIRTAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTGR 273
Query: 306 YVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPS 365
++ LG+PSL+RE+S + +A+ I+ + P + ++ ++L PS
Sbjct: 274 FIEARLGKPSLVRETS------RITVLEALRHPIQVSRRL-LSRPQDVLEG---VVLSPS 323
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425
L+ R++ +A AT NTK ++ +R++L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP
Sbjct: 324 LEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAP 383
Query: 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL 459
+G + VT +H++FDWA S++GLLLF+DEADAFL
Sbjct: 384 MGREGVTAMHKLFDWANTSRRGLLLFMDEADAFL 417
>sp|Q3KRE0|ATAD3_RAT ATPase family AAA domain-containing protein 3 OS=Rattus norvegicus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 161/443 (36%), Positives = 239/443 (53%), Gaps = 44/443 (9%)
Query: 34 FSFFSSSPQPTSSGNDEAEQTADAQKSREPEEPRGSG-----------FDPEALERAAKA 82
S+ P G AQ E RG+G FDP LERAAKA
Sbjct: 1 MSWLFGIKGPKGEGTGPPLPLPPAQPGAESGGDRGAGDRPSPKDKWSNFDPTGLERAAKA 60
Query: 83 LREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQ 142
RE SRHA+EA ++ + QEQT E + YEA Q+ E+ R AEE R + +
Sbjct: 61 ARELEHSRHAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRVQAEERRKTLNE 120
Query: 143 KA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQ 199
+ QARAQ +D+LAR+R + + Q+ N E ++ QEES ++E RR+T E+
Sbjct: 121 ETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAIRRATVEREM 177
Query: 200 AQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAIN 259
+ E R E E A+ + +L +R+ ++E +I
Sbjct: 178 ELRHKNEMLRVEAEARARAKADRENADIIREQIRLKAAEHRQTILE-----------SIR 226
Query: 260 TTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRE 319
T + EG R+ +TD +K+ TV G T LA G+Y+ + V Y+ LG+PSL+RE
Sbjct: 227 TAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVAGRYIEARLGKPSLVRE 286
Query: 320 SSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDIILHPSLQRRIQHLAKA 376
+S ++ + +R+ + P +A++ +IL PSL+ R++ +A A
Sbjct: 287 TS----------RISVLEALRHPIQVSRRLVSRPQDALEG---VILSPSLEARVRDIAIA 333
Query: 377 TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHE 436
T NTK +++ +RN+L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP+G + VT +H+
Sbjct: 334 TRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHK 393
Query: 437 IFDWAKKSKKGLLLFIDEADAFL 459
+FDWA S++GLLLF+DEADAFL
Sbjct: 394 VFDWASTSRRGLLLFVDEADAFL 416
>sp|Q925I1|ATAD3_MOUSE ATPase family AAA domain-containing protein 3 OS=Mus musculus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 153/399 (38%), Positives = 230/399 (57%), Gaps = 33/399 (8%)
Query: 67 RGSGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDV 126
+ S FDP LERAAKA RE SRHA+EA + + QEQT E + YEA Q+
Sbjct: 45 KWSNFDPTGLERAAKAARELEHSRHAKEALSLAQMQEQTLQLEQQSKLKEYEAAVEQLKS 104
Query: 127 ERQRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEES 183
E+ R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES
Sbjct: 105 EQIRVQAEERRKTLTEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEES 161
Query: 184 SIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRML 243
++E RR+T E+ + E R E E A+ + +L +R+ +
Sbjct: 162 VQKQEAIRRATVEREMELRHKNEMLRVEAEARARAKADRENADIIREQIRLKAAEHRQTI 221
Query: 244 IERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVT 303
+E +I T + + EG R+ +TD +K+ TV G T LA G+Y+ + V
Sbjct: 222 LE-----------SIRTAGTLLGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVA 270
Query: 304 WGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDI 360
Y+ LG+PSL+RE+S ++ + +R+ + P +A++ +
Sbjct: 271 GRYIEARLGKPSLVRETS----------RISVLEALRHPIQVSRRLVSRPQDALEG---V 317
Query: 361 ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 420
IL PSL+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A SG+DYA+MTG
Sbjct: 318 ILSPSLEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTG 377
Query: 421 GDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL 459
GDVAP+G + VT +H++FDWA S++GLLLF+DEADAFL
Sbjct: 378 GDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFL 416
>sp|Q9NVI7|ATD3A_HUMAN ATPase family AAA domain-containing protein 3A OS=Homo sapiens
GN=ATAD3A PE=1 SV=2
Length = 634
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 153/444 (34%), Positives = 233/444 (52%), Gaps = 75/444 (16%)
Query: 67 RGSGFDPEALERAAKALREFNSSRHAREAFDI-----------------MR--------- 100
+ S FDP LERAAKA RE SR+A++A ++ MR
Sbjct: 46 KWSNFDPTGLERAAKAARELEHSRYAKDALNLAQMQEQTLQLEQQSKLKMRLEALSLLHT 105
Query: 101 ------------KQEQTRLA-ELDVEKV---------HYEAIQSQVDVERQRKLAEEHRN 138
Q Q RL+ E+V YEA Q+ E+ R AEE R
Sbjct: 106 LVWAWSLCRAGAVQTQERLSGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRK 165
Query: 139 LVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTE 195
+ ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES ++E RR+T
Sbjct: 166 TLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATV 222
Query: 196 EQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWL 255
E+ + E R E E A+ + +L +R+ ++E
Sbjct: 223 EREMELRHKNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTVLE---------- 272
Query: 256 AAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPS 315
+I T + EG R+ +TD +K+ TV G T LA G+Y+ + V ++ LG+PS
Sbjct: 273 -SIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATLVAGRFIEARLGKPS 331
Query: 316 LIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAK 375
L+RE+S + +A+ I+ + P +A++ ++L PSL+ R++ +A
Sbjct: 332 LVRETS------RITVLEALRHPIQVSRRL-LSRPQDALEG---VVLSPSLEARVRDIAI 381
Query: 376 ATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIH 435
AT NTK +++ +RN+L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP+G + VT +H
Sbjct: 382 ATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMH 441
Query: 436 EIFDWAKKSKKGLLLFIDEADAFL 459
++FDWA S++GLLLF+DEADAFL
Sbjct: 442 KLFDWANTSRRGLLLFVDEADAFL 465
>sp|Q5T2N8|ATD3C_HUMAN ATPase family AAA domain-containing protein 3C OS=Homo sapiens
GN=ATAD3C PE=2 SV=2
Length = 411
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 138/215 (64%), Gaps = 9/215 (4%)
Query: 245 ERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTW 304
E + + +L +I + EG R+ +TDR+K+ TV G T LA G+Y+ + VT
Sbjct: 37 ESVQKHHQTFLESIRAAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTG 96
Query: 305 GYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHP 364
Y+ LG+PSL+RE+S + +A+ I+ + + P + ++ ++L P
Sbjct: 97 RYIEARLGKPSLVRETS------RITVLEALRHPIQQVSRRLLSRPQDVLEG---VVLSP 147
Query: 365 SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 424
SL+ R++ +A T N K ++ +R++L YGPPGTGKT+ A+++A SG+DYA+MTGGDVA
Sbjct: 148 SLEARVRDIAIMTRNIKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVA 207
Query: 425 PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL 459
P+G + VT +H++FDWA S++GLLLF+DEADAFL
Sbjct: 208 PMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFL 242
>sp|A9KIG5|FTSH_CLOPH ATP-dependent zinc metalloprotease FtsH OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=ftsH PE=3 SV=1
Length = 577
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL--GAQAVTKIHEIFDWAKKSK 445
+ ++ YGPPGTGKT++A+ IA ++G+ + M+G D + G A ++I +F+ AKKS+
Sbjct: 180 KGVMLYGPPGTGKTLIAKAIATEAGVPFYAMSGSDFVQMYVGVGA-SRIRTLFNKAKKSE 238
Query: 446 KGLLLFIDEADAF 458
K ++FIDE DA
Sbjct: 239 KA-VIFIDEIDAI 250
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 380 TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIF 438
T+I P + +L YGPPGTGKT++A+ +A ++ + + G + V + + E+F
Sbjct: 205 TQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF 264
Query: 439 DWAKKSKKGLLLFIDEADA 457
D AKK K ++FIDE DA
Sbjct: 265 DLAKK-KAPTIIFIDEIDA 282
>sp|Q7KN62|TERA_DROME Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila
melanogaster GN=TER94 PE=1 SV=1
Length = 801
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 14/97 (14%)
Query: 363 HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 422
HPSL + I P R +L YGPPGTGKT++AR +A ++G + ++ G +
Sbjct: 223 HPSLFK------------AIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPE 270
Query: 423 V-APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
+ + L ++ + + + F+ A+K+ ++FIDE DA
Sbjct: 271 IMSKLAGESESNLRKAFEEAEKNSPA-IIFIDEIDAI 306
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 349 GPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
G +E++K L +Q ++H K K P R +LFYGPPG GKT++A+ IA
Sbjct: 477 GGLESVKKE----LQELVQYPVEHPDKFL---KFGMQPSRGVLFYGPPGCGKTLLAKAIA 529
Query: 409 RKSGLDYAMMTGGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
+ ++ + G ++ + ++ + +IFD A +S +LF DE D+
Sbjct: 530 NECQANFISVKGPELLTMWFGESEANVRDIFDKA-RSAAPCVLFFDELDSI 579
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp
PE=1 SV=3
Length = 805
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE DA
Sbjct: 293 AEKNAPA-IIFIDELDAI 309
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 365 SLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419
++R +Q L + K P + +LFYGPPG GKT++A+ IA + ++ +
Sbjct: 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543
Query: 420 GGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
G ++ + ++ + EIFD A+++ +LF DE D+
Sbjct: 544 GPELLTMWFGESEANVREIFDKARQAAP-CVLFFDELDSI 582
>sp|Q6GL04|TERA_XENTR Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis
GN=vcp PE=2 SV=1
Length = 805
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE DA
Sbjct: 293 AEKNAPA-IIFIDELDAI 309
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 366 LQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 420
++R +Q L + K P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 485 VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544
Query: 421 GDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
++ + ++ + EIFD A+++ +LF DE D+
Sbjct: 545 PELLTMWFGESEANVREIFDKARQAAP-CVLFFDELDSI 582
>sp|Q83FV7|FTSH_TROWT ATP-dependent zinc metalloprotease FtsH OS=Tropheryma whipplei
(strain Twist) GN=ftsH PE=3 SV=1
Length = 666
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 40/185 (21%)
Query: 294 YTTREGARVTWGYVNRILGQPSLIRESSIGKFPW--------------------SGLLSQ 333
+T A WG + +L + ++IG F W S L+S+
Sbjct: 100 FTDEVPAPSVWGSIISML-----LPIAAIGLFLWFMAGPQAAGGRGIAQFSRMRSRLVSK 154
Query: 334 AMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFY 393
M KV R AG VE ++ D + P R++ +I + +L +
Sbjct: 155 EMPKV-RFTDVAGADEAVEELQEIKDFLSDPDKYRKL--------GARIP----KGVLLF 201
Query: 394 GPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKKGLLLFI 452
GPPGTGKT++AR +A ++G+ + ++G D V +++ ++F+ AK++ ++FI
Sbjct: 202 GPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKQNSPS-IIFI 260
Query: 453 DEADA 457
DE DA
Sbjct: 261 DEIDA 265
>sp|Q7ZU99|TERA_DANRE Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp
PE=1 SV=1
Length = 806
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE DA
Sbjct: 293 AEKNAPA-IIFIDELDAI 309
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 365 SLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419
++R +Q L + K P + +LFYGPPG GKT++A+ IA + ++ +
Sbjct: 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543
Query: 420 GGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
G ++ + ++ + EIFD A+++ +LF DE D+
Sbjct: 544 GPELLTMWFGESEANVREIFDKARQAAP-CVLFFDELDSI 582
>sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus
GN=Vcp PE=1 SV=3
Length = 806
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE DA
Sbjct: 293 AEKNAPA-IIFIDELDAI 309
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 365 SLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419
++R +Q L + K P + +LFYGPPG GKT++A+ IA + ++ +
Sbjct: 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543
Query: 420 GGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
G ++ + ++ + EIFD A+++ +LF DE D+
Sbjct: 544 GPELLTMWFGESEANVREIFDKARQAAP-CVLFFDELDSI 582
>sp|Q8SSJ5|CDC48_ENCCU Cell division control protein 48 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=CDC48 PE=1 SV=1
Length = 780
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 380 TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIF 438
+KI P + +L YGPPGTGKT++AR IA ++G ++ G ++ + + ++ + + + F
Sbjct: 235 SKIGVKPPKGILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAF 294
Query: 439 DWAKKSKKGLLLFIDEADAF 458
+ A+K+ ++FIDE DA
Sbjct: 295 EEAEKNSPA-IIFIDEIDAL 313
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGA-QAVTKIHEIFD 439
K P + +LFYGPPG GKT++A+ +A + ++ + G ++ + ++ + I ++F
Sbjct: 509 KFGMTPAKGVLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFA 568
Query: 440 WAKKSKKGLLLFIDEADAF 458
A+ + +LF DE D+
Sbjct: 569 RARGAAP-CVLFFDEIDSI 586
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat
PE=1 SV=1
Length = 745
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 444
P + ++ YGPPGTGKT++AR +A +SG ++ + G ++ + Q+ K+ EIF A+++
Sbjct: 223 PPKGVILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEET 282
Query: 445 KKGLLLFIDEADAF 458
++FIDE D+
Sbjct: 283 APS-IIFIDEIDSI 295
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 373 LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAV 431
L K ++ P + L YGPPG GKT++A+ +A +S ++ + G +V + ++
Sbjct: 487 LLKPDVFKRLGIRPSKGFLLYGPPGVGKTLLAKAVATESNANFISIKGPEVLSKWVGESE 546
Query: 432 TKIHEIFDWAKKSKKGLLLFIDEADAF 458
I EIF AK+ ++F+DE D+
Sbjct: 547 KAIREIFKKAKQVAPA-IVFLDEIDSI 572
>sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp
PE=1 SV=4
Length = 806
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE DA
Sbjct: 293 AEKNAPA-IIFIDELDAI 309
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 365 SLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419
++R +Q L + K P + +LFYGPPG GKT++A+ IA + ++ +
Sbjct: 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543
Query: 420 GGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
G ++ + ++ + EIFD A+++ +LF DE D+
Sbjct: 544 GPELLTMWFGESEANVREIFDKARQAAP-CVLFFDELDSI 582
>sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP
PE=1 SV=4
Length = 806
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE DA
Sbjct: 293 AEKNAPA-IIFIDELDAI 309
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 365 SLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419
++R +Q L + K P + +LFYGPPG GKT++A+ IA + ++ +
Sbjct: 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543
Query: 420 GGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
G ++ + ++ + EIFD A+++ +LF DE D+
Sbjct: 544 GPELLTMWFGESEANVREIFDKARQAAP-CVLFFDELDSI 582
>sp|Q3ZBT1|TERA_BOVIN Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=2
SV=1
Length = 806
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE DA
Sbjct: 293 AEKNAPA-IIFIDELDAI 309
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 365 SLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419
++R +Q L + K P + +LFYGPPG GKT++A+ IA + ++ +
Sbjct: 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543
Query: 420 GGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
G ++ + ++ + EIFD A+++ +LF DE D+
Sbjct: 544 GPELLTMWFGESEANVREIFDKARQAAP-CVLFFDELDSI 582
>sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1
SV=5
Length = 806
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE DA
Sbjct: 293 AEKNAPA-IIFIDELDAI 309
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421
L +Q ++H K K P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 489 LQDLVQYPVEHPDKFL---KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545
Query: 422 DVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
++ + ++ + EIFD A+++ +LF DE D+
Sbjct: 546 ELLTMWFGESEANVREIFDKARQAAP-CVLFFDELDSI 582
>sp|Q9CD58|FTSH_MYCLE ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium leprae
(strain TN) GN=ftsH PE=3 SV=1
Length = 787
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+ +L YGPPGTGKT++AR +A ++G+ + ++G D V +++ ++FD AK++
Sbjct: 197 KGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFDQAKQNSP 256
Query: 447 GLLLFIDEADA 457
++F+DE DA
Sbjct: 257 -CIIFVDEIDA 266
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 373 LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAV 431
L K K+ +P + +L YGPPGTGKT++AR +A ++ + + G + V +
Sbjct: 173 LTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGA 232
Query: 432 TKIHEIFDWAKKSKKGLLLFIDEADAF 458
+ E+FD AK+ ++FIDE DA
Sbjct: 233 RLVRELFDLAKQRAPS-IIFIDEIDAI 258
>sp|Q5AWS6|CDC48_EMENI Cell division control protein 48 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=cdc48 PE=1 SV=2
Length = 823
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 35/168 (20%)
Query: 295 TTREGARVTWGYVNRILGQPSLIRESSIGKFP---WSGLLSQAMNKVIRNKTSAGTAGPV 351
T E R G N PS +RE ++ + P W + G +
Sbjct: 468 VTMENFRYALGVSN-----PSALREVAVVEVPNVRWEDI------------------GGL 504
Query: 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
E +K L S+Q + H K K +P R +LFYGPPGTGKTM+A+ +A +
Sbjct: 505 EEVKRE----LIESVQYPVDHPEKFQ---KFGLSPSRGVLFYGPPGTGKTMLAKAVANEC 557
Query: 412 GLDYAMMTGGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
++ + G ++ + ++ + I +IFD A+ + ++F+DE D+
Sbjct: 558 AANFISVKGPELLSMWFGESESNIRDIFDKARAAAP-CVVFLDELDSI 604
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 444
P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + + ++ + + + F+ A+K+
Sbjct: 258 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 317
Query: 445 KKGLLLFIDEADAF 458
++FIDE D+
Sbjct: 318 SPA-IIFIDEIDSI 330
>sp|A9EXK6|FTSH4_SORC5 ATP-dependent zinc metalloprotease FtsH 4 OS=Sorangium cellulosum
(strain So ce56) GN=ftsH4 PE=3 SV=1
Length = 648
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 330 LLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRN 389
LLS+A NKV T A AG EA +II ++ Q L +
Sbjct: 154 LLSEAQNKV----TFADVAGIDEAKDELEEIIAFLKDPKKFQKLGGRIP---------KG 200
Query: 390 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKKGL 448
+L GPPGTGKT++AR IA ++G+ + ++G D V +++ ++F+ KK
Sbjct: 201 VLMMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKHAP-C 259
Query: 449 LLFIDEADA 457
++FIDE DA
Sbjct: 260 IIFIDEIDA 268
>sp|Q6M2F0|FTSH_CORGL ATP-dependent zinc metalloprotease FtsH OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=ftsH PE=3 SV=1
Length = 853
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
R +L YGPPGTGKT++AR +A ++G+ + ++G D V +++ ++F AK++
Sbjct: 199 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSP 258
Query: 447 GLLLFIDEADA 457
++F+DE DA
Sbjct: 259 -CIIFVDEIDA 268
>sp|Q9SSB4|PRS7B_ARATH 26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana
GN=RPT1B PE=2 SV=2
Length = 464
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKS 444
P + +L YGPPG+GKT+VAR +A ++G + + G + V + + E+F A +S
Sbjct: 238 PPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMA-RS 296
Query: 445 KKGLLLFIDEADAF 458
KK +LF DE DA
Sbjct: 297 KKACILFFDEIDAI 310
>sp|C0ZPK5|FTSH_RHOE4 ATP-dependent zinc metalloprotease FtsH OS=Rhodococcus erythropolis
(strain PR4 / NBRC 100887) GN=ftsH PE=3 SV=1
Length = 854
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
R +L YGPPGTGKT++AR +A ++G+ + ++G D V +++ ++F+ AK++
Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKQNSP 260
Query: 447 GLLLFIDEADA 457
++F+DE DA
Sbjct: 261 -CIIFVDEIDA 270
>sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana
GN=CDC48E PE=1 SV=2
Length = 810
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421
L ++Q ++H K K +P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 492 LQETVQYPVEHPEKFE---KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 548
Query: 422 DVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
++ + ++ + EIFD A++S +LF DE D+
Sbjct: 549 ELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSI 585
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+
Sbjct: 236 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 295
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE D+
Sbjct: 296 AEKNAPS-IIFIDEIDSI 312
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 439
K+ P + +L YGPPGTGKT++A+ +AR++ + + G + V + + ++F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 440 WAKKSKKGLLLFIDEADA 457
AK+ K ++FIDE DA
Sbjct: 236 LAKE-KSPCIIFIDEIDA 252
>sp|B8D065|FTSH_HALOH ATP-dependent zinc metalloprotease FtsH OS=Halothermothrix orenii
(strain H 168 / OCM 544 / DSM 9562) GN=ftsH PE=3 SV=1
Length = 630
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VA 424
LQ ++ L T++ + +L GPPGTGKT++AR +A ++G+ + +++G D V
Sbjct: 175 LQEVVEFLKNPDKFTRMGAKVPKGVLLVGPPGTGKTLLARAVAGEAGVPFFIISGSDFVE 234
Query: 425 PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADA 457
+++ ++F+ KK+ ++FIDE DA
Sbjct: 235 MFVGVGASRVRDLFEQGKKNAP-CIIFIDELDA 266
>sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1
OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1
Length = 809
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 444
P R +L +GPPGTGKT++AR +A ++G + ++ G +V + + ++ + + + F+ +K+
Sbjct: 243 PPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKN 302
Query: 445 KKGLLLFIDEADAF 458
+ +LFIDE DA
Sbjct: 303 QPA-ILFIDEIDAI 315
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 365 SLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419
+++R +Q L + K P R +LFYGPPG GKT++A+ IA + ++ +
Sbjct: 490 NVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIK 549
Query: 420 GGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
G ++ + ++ + ++FD A+ + +LF DE D+
Sbjct: 550 GPELLTMWFGESEANVRDVFDKARAAAP-CVLFFDELDSI 588
>sp|Q9SAJ3|FTSHC_ARATH ATP-dependent zinc metalloprotease FTSH 12, chloroplastic
OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2
Length = 1008
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKG 447
R +L GPPGTGKT+ AR +A++SGL + +G + KI+E+F A+++
Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAKINEMFSIARRNAPA 586
Query: 448 LLLFIDEADA 457
+F+DE DA
Sbjct: 587 -FVFVDEIDA 595
>sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2
SV=1
Length = 807
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421
L ++Q ++H K K +P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 493 LQETVQYPVEHPEKFE---KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 549
Query: 422 DVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
++ + ++ + EIFD A++S +LF DE D+
Sbjct: 550 ELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSI 586
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+
Sbjct: 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 296
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE D+
Sbjct: 297 AEKNAPS-IIFIDEIDSI 313
>sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing protein C16E9.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16E9.10c PE=1 SV=1
Length = 779
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 380 TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIF 438
T IH P R +L +GPPG GKTM+A +A + G+ + ++ V+ + ++ K+ E+F
Sbjct: 203 TGIH--PPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVF 260
Query: 439 DWAKKSKKGLLLFIDEADAF 458
+ A KS L+FIDE DA
Sbjct: 261 EEA-KSLAPCLMFIDEIDAV 279
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 390 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGAQAVTKIHEIFDWAKKSKKGL 448
+L +GPPG GKT++A+ +A +S ++ + G ++ ++ + ++F A+ S
Sbjct: 529 VLLWGPPGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFLRARASSP-C 587
Query: 449 LLFIDEADAFL 459
++F DE DA +
Sbjct: 588 VIFFDELDAMV 598
>sp|Q9SCN8|CD48D_ARATH Cell division control protein 48 homolog D OS=Arabidopsis thaliana
GN=CDC48D PE=1 SV=1
Length = 815
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421
L ++Q ++H K K +P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 493 LQETVQYPVEHPEKFE---KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 549
Query: 422 DVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
++ + ++ + EIFD A++S +LF DE D+
Sbjct: 550 ELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSI 586
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+
Sbjct: 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 296
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE D+
Sbjct: 297 AEKNAPS-IIFIDEIDSI 313
>sp|P54609|CD48A_ARATH Cell division control protein 48 homolog A OS=Arabidopsis thaliana
GN=CDC48A PE=1 SV=1
Length = 809
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421
L ++Q ++H K K +P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 492 LQETVQYPVEHPEKFE---KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 548
Query: 422 DVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
++ + ++ + EIFD A++S +LF DE D+
Sbjct: 549 ELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSI 585
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+
Sbjct: 236 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 295
Query: 441 AKKSKKGLLLFIDEADAF 458
A+K+ ++FIDE D+
Sbjct: 296 AEKNAPS-IIFIDEIDSI 312
>sp|D5H7Z5|FTSH1_SALRM ATP-dependent zinc metalloprotease FtsH 1 OS=Salinibacter ruber
(strain M8) GN=ftsH1 PE=3 SV=1
Length = 686
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 370 IQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL--G 427
++ L + T++ A +L GPPGTGKT++A+ +A ++G+ +A ++G D + G
Sbjct: 233 VEFLRRPQKFTRLGGALPTGVLLVGPPGTGKTLLAKAVAGEAGVPFASISGSDFMEMFVG 292
Query: 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458
A +++ ++FD AK+ + ++FIDE DA
Sbjct: 293 VGA-SRVRDLFDQAKE-RAPCIIFIDEVDAI 321
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 96/187 (51%), Gaps = 20/187 (10%)
Query: 82 ALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQ 141
AL+ R +E + +++QEQ RL E+ E +Q + +++RQ + + ++
Sbjct: 2738 ALKRQEQERLQKE--EELKRQEQERL-----EREKQEQLQKEEELKRQEQERLQKEEALK 2790
Query: 142 QKAQARAQGLRNEDELARK---RLQTDHEAQRRHNTELVKMQEESSIRKEQA-RRSTEEQ 197
++ Q R L+ E+EL R+ RL+ + + Q + EL K QE+ ++KE+A +R +E+
Sbjct: 2791 RQEQER---LQKEEELKRQEQERLEREKQEQLQKEEEL-KRQEQERLQKEEALKRQEQER 2846
Query: 198 IQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAA 257
+Q ++ L +E+ +ER+ I + AE H E +++ + + E+++ +
Sbjct: 2847 LQKEEELKRQEQERLERKKIEL-----AEREQHIKSKLESDMVKIIKDELTKEKDEIIKN 2901
Query: 258 INTTFSH 264
+ H
Sbjct: 2902 KDIKLRH 2908
>sp|Q67JH0|FTSH3_SYMTH ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH3 PE=3 SV=1
Length = 626
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+ +L YGPPGTGKT++A+ +A ++G+ + ++G D V +++ ++F+ AKK+
Sbjct: 191 KGVLLYGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSP 250
Query: 447 GLLLFIDEADA 457
++FIDE DA
Sbjct: 251 -CIVFIDEIDA 260
>sp|P0C5C0|FTSH_MYCTU ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium
tuberculosis GN=ftsH PE=1 SV=1
Length = 760
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+ +L YGPPGTGKT++AR +A ++G+ + ++G D V +++ ++F+ AK++
Sbjct: 197 KGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSP 256
Query: 447 GLLLFIDEADA 457
++F+DE DA
Sbjct: 257 -CIIFVDEIDA 266
>sp|A5U8T5|FTSH_MYCTA ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3
SV=1
Length = 760
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+ +L YGPPGTGKT++AR +A ++G+ + ++G D V +++ ++F+ AK++
Sbjct: 197 KGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSP 256
Query: 447 GLLLFIDEADA 457
++F+DE DA
Sbjct: 257 -CIIFVDEIDA 266
>sp|P0A4V9|FTSH_MYCBO ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=ftsH PE=3 SV=1
Length = 760
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+ +L YGPPGTGKT++AR +A ++G+ + ++G D V +++ ++F+ AK++
Sbjct: 197 KGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSP 256
Query: 447 GLLLFIDEADA 457
++F+DE DA
Sbjct: 257 -CIIFVDEIDA 266
>sp|Q9P3A7|CDC48_SCHPO Cell division cycle protein 48 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc48 PE=1 SV=2
Length = 815
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 444
P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + + ++ + + + F+ A+K+
Sbjct: 257 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 316
Query: 445 KKGLLLFIDEADAF 458
++FIDE D+
Sbjct: 317 SPA-IIFIDEIDSI 329
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL-GAQAVTKIHEIFDWAKKS 444
P + +LF+GPPGTGKT++A+ IA + ++ + G ++ + ++ + + +IFD A+ +
Sbjct: 530 PSKGVLFFGPPGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAA 589
Query: 445 KKGLLLFIDEADAF 458
++F+DE D+
Sbjct: 590 AP-CVVFLDELDSI 602
>sp|D3F124|FTSH1_CONWI ATP-dependent zinc metalloprotease FtsH 1 OS=Conexibacter woesei
(strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)
GN=ftsH1 PE=3 SV=1
Length = 653
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSKK 446
+ +L YGPPGTGKT++AR +A ++G+ + ++G D V +++ ++F+ AK++
Sbjct: 192 KGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKQNAP 251
Query: 447 GLLLFIDEADA 457
++F+DE DA
Sbjct: 252 -CIIFMDEIDA 261
>sp|Q67LC0|FTSH1_SYMTH ATP-dependent zinc metalloprotease FtsH 1 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH1 PE=3 SV=1
Length = 594
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGA-QAVTKIHEIFDWAKKSKK 446
R +L GPPGTGKT++AR +A ++G+ + +G D L A ++ +FD A+K+
Sbjct: 180 RGILLSGPPGTGKTLLARALAGEAGVPFFSASGSDFVELFAGTGAARVRALFDRARKAAP 239
Query: 447 GLLLFIDEADAF 458
++FIDE DA
Sbjct: 240 -CIVFIDEIDAL 250
>sp|P25694|CDC48_YEAST Cell division control protein 48 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC48 PE=1 SV=3
Length = 835
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 444
P R +L YGPPGTGKT++AR +A ++G + ++ G +V + + ++ + + + F+ A+K+
Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306
Query: 445 KKGLLLFIDEADAF 458
++FIDE D+
Sbjct: 307 APA-IIFIDEIDSI 319
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 380 TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL-GAQAVTKIHEIF 438
TK +P + +LFYGPPGTGKT++A+ +A + ++ + G ++ + ++ + I +IF
Sbjct: 514 TKFGLSPSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIF 573
Query: 439 DWAKKSKKGLLLFIDEADAF 458
D A+ + ++F+DE D+
Sbjct: 574 DKARAAAP-TVVFLDELDSI 592
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,701,126
Number of Sequences: 539616
Number of extensions: 6485956
Number of successful extensions: 59685
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 3284
Number of HSP's that attempted gapping in prelim test: 45307
Number of HSP's gapped (non-prelim): 10913
length of query: 466
length of database: 191,569,459
effective HSP length: 121
effective length of query: 345
effective length of database: 126,275,923
effective search space: 43565193435
effective search space used: 43565193435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)