Query 012305
Match_columns 466
No_of_seqs 386 out of 2312
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:49:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_L 26S protease subunit RP 99.9 2.4E-22 8.2E-27 209.3 7.4 273 149-463 12-291 (437)
2 4b4t_J 26S protease regulatory 99.8 3.1E-19 1.1E-23 183.4 7.3 111 352-463 142-258 (405)
3 4b4t_M 26S protease regulatory 99.7 1.4E-18 4.9E-23 180.7 6.5 114 350-464 173-292 (434)
4 4b4t_I 26S protease regulatory 99.7 2.1E-18 7.2E-23 178.0 7.5 112 351-463 175-292 (437)
5 4b4t_H 26S protease regulatory 99.7 4.2E-18 1.4E-22 177.3 7.3 113 351-464 202-320 (467)
6 4b4t_K 26S protease regulatory 99.7 6E-18 2E-22 175.8 6.9 112 351-463 165-282 (428)
7 1qvr_A CLPB protein; coiled co 99.6 4.2E-16 1.4E-20 175.6 11.7 255 154-462 403-676 (854)
8 2qz4_A Paraplegin; AAA+, SPG7, 99.6 9.7E-16 3.3E-20 147.6 9.2 107 355-462 3-114 (262)
9 3cf2_A TER ATPase, transitiona 99.6 5.4E-16 1.8E-20 172.1 6.6 112 352-464 198-315 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 99.6 1.3E-15 4.4E-20 153.0 8.2 111 353-464 7-123 (322)
11 3eie_A Vacuolar protein sortin 99.6 6.2E-16 2.1E-20 155.0 5.8 111 352-463 12-127 (322)
12 3cf2_A TER ATPase, transitiona 99.6 7.3E-16 2.5E-20 171.0 3.5 111 352-463 471-587 (806)
13 1lv7_A FTSH; alpha/beta domain 99.5 4.6E-15 1.6E-19 143.3 7.5 110 353-463 7-121 (257)
14 2ce7_A Cell division protein F 99.5 5.5E-15 1.9E-19 155.8 8.5 110 353-463 11-125 (476)
15 2qp9_X Vacuolar protein sortin 99.5 2.5E-15 8.6E-20 152.9 5.7 111 352-463 45-160 (355)
16 2r62_A Cell division protease 99.5 2.4E-15 8.1E-20 145.9 5.1 109 353-462 6-119 (268)
17 2c9o_A RUVB-like 1; hexameric 99.5 6.4E-15 2.2E-19 154.7 7.5 110 350-464 29-144 (456)
18 3cf0_A Transitional endoplasmi 99.5 2.1E-15 7.2E-20 149.8 3.0 110 353-463 10-125 (301)
19 3vfd_A Spastin; ATPase, microt 99.5 9.9E-15 3.4E-19 149.9 7.4 110 353-463 110-224 (389)
20 3b9p_A CG5977-PA, isoform A; A 99.5 1.4E-14 4.7E-19 142.6 7.8 110 353-463 16-130 (297)
21 2zan_A Vacuolar protein sortin 99.5 9.3E-15 3.2E-19 153.0 6.7 110 353-463 129-244 (444)
22 3h4m_A Proteasome-activating n 99.5 1.1E-14 3.8E-19 142.3 6.8 111 352-463 11-127 (285)
23 3d8b_A Fidgetin-like protein 1 99.5 1.7E-14 6E-19 146.6 6.8 110 353-463 79-193 (357)
24 3t15_A Ribulose bisphosphate c 99.5 2.8E-14 9.6E-19 141.3 5.5 80 384-463 33-116 (293)
25 3hu3_A Transitional endoplasmi 99.4 3.2E-14 1.1E-18 150.6 5.1 109 354-463 200-314 (489)
26 2dhr_A FTSH; AAA+ protein, hex 99.4 1.2E-13 4E-18 146.4 8.2 110 353-463 26-140 (499)
27 3n70_A Transport activator; si 99.4 5.8E-14 2E-18 124.4 3.2 88 359-462 2-92 (145)
28 2x8a_A Nuclear valosin-contain 99.4 3.2E-13 1.1E-17 132.6 6.9 109 353-462 5-119 (274)
29 3hws_A ATP-dependent CLP prote 99.4 2.7E-13 9.4E-18 137.7 4.4 104 360-463 17-133 (363)
30 3syl_A Protein CBBX; photosynt 99.3 3.6E-13 1.2E-17 132.9 4.5 100 359-462 32-146 (309)
31 3co5_A Putative two-component 99.3 7.9E-14 2.7E-18 123.3 -0.3 87 359-462 5-91 (143)
32 1d2n_A N-ethylmaleimide-sensit 99.3 1.4E-12 4.8E-17 126.9 8.5 102 357-461 32-139 (272)
33 1ixz_A ATP-dependent metallopr 99.3 5.4E-13 1.9E-17 128.4 5.0 110 352-462 10-124 (254)
34 1ofh_A ATP-dependent HSL prote 99.3 9E-13 3.1E-17 129.6 5.1 105 358-462 15-132 (310)
35 1ypw_A Transitional endoplasmi 99.3 1E-12 3.4E-17 147.1 5.2 111 352-463 471-587 (806)
36 1jbk_A CLPB protein; beta barr 99.3 2.5E-12 8.5E-17 116.1 6.3 100 354-461 18-130 (195)
37 3pvs_A Replication-associated 99.3 2.1E-12 7.3E-17 135.2 5.8 99 354-466 22-126 (447)
38 3pfi_A Holliday junction ATP-d 99.3 1.3E-12 4.4E-17 130.9 4.0 96 355-461 26-121 (338)
39 1iy2_A ATP-dependent metallopr 99.3 1.9E-12 6.4E-17 126.7 4.9 109 353-462 35-148 (278)
40 1hqc_A RUVB; extended AAA-ATPa 99.3 2.6E-12 9E-17 127.4 5.5 98 354-461 8-105 (324)
41 2p65_A Hypothetical protein PF 99.3 3.8E-12 1.3E-16 114.9 6.0 99 355-461 19-130 (187)
42 1ypw_A Transitional endoplasmi 99.2 3.8E-12 1.3E-16 142.4 6.4 110 353-463 199-314 (806)
43 3u61_B DNA polymerase accessor 99.2 4.3E-12 1.5E-16 126.4 5.3 96 354-459 22-118 (324)
44 3pxi_A Negative regulator of g 99.2 7.9E-12 2.7E-16 139.0 7.5 101 358-462 491-595 (758)
45 3uk6_A RUVB-like 2; hexameric 99.2 4E-12 1.4E-16 128.5 4.6 70 350-422 36-107 (368)
46 1um8_A ATP-dependent CLP prote 99.2 5.1E-12 1.7E-16 128.9 4.8 103 359-461 22-152 (376)
47 2bjv_A PSP operon transcriptio 99.2 2.5E-12 8.6E-17 124.5 1.9 98 355-462 3-116 (265)
48 1ny5_A Transcriptional regulat 99.2 6E-13 2E-17 136.9 -3.6 190 233-462 42-247 (387)
49 1sxj_A Activator 1 95 kDa subu 99.2 1E-11 3.4E-16 132.4 5.1 109 354-462 35-164 (516)
50 1ojl_A Transcriptional regulat 99.2 3.8E-12 1.3E-16 126.7 1.7 94 358-461 2-111 (304)
51 3dzd_A Transcriptional regulat 99.2 1.5E-12 5E-17 133.2 -1.5 184 232-463 41-239 (368)
52 1r6b_X CLPA protein; AAA+, N-t 99.1 3.9E-11 1.3E-15 133.3 7.1 101 358-462 458-573 (758)
53 4fcw_A Chaperone protein CLPB; 99.1 1.9E-11 6.4E-16 120.6 3.7 103 358-461 17-134 (311)
54 1l8q_A Chromosomal replication 99.1 1E-10 3.5E-15 116.5 5.7 103 351-460 4-112 (324)
55 1qvr_A CLPB protein; coiled co 99.0 1.5E-10 5.1E-15 130.4 7.3 100 354-461 166-278 (854)
56 2v1u_A Cell division control p 99.0 1.5E-10 5.3E-15 116.6 6.3 104 354-461 15-145 (387)
57 3bos_A Putative DNA replicatio 99.0 3.3E-10 1.1E-14 106.5 6.7 96 351-461 21-119 (242)
58 3m6a_A ATP-dependent protease 99.0 2.1E-10 7E-15 123.0 5.7 101 358-462 81-191 (543)
59 2chg_A Replication factor C sm 99.0 4.9E-10 1.7E-14 103.3 6.3 99 354-461 13-117 (226)
60 3te6_A Regulatory protein SIR3 99.0 1.9E-10 6.4E-15 115.1 3.5 74 386-459 44-145 (318)
61 1sxj_D Activator 1 41 kDa subu 99.0 2.4E-10 8.1E-15 114.4 4.2 99 354-462 33-149 (353)
62 3pxg_A Negative regulator of g 98.9 5.9E-10 2E-14 117.3 6.5 89 354-453 176-274 (468)
63 2chq_A Replication factor C sm 98.9 2.1E-10 7.1E-15 112.9 2.4 99 354-462 13-118 (319)
64 1fnn_A CDC6P, cell division co 98.9 1.6E-09 5.4E-14 109.6 9.0 104 353-458 12-137 (389)
65 2w58_A DNAI, primosome compone 98.9 3.2E-10 1.1E-14 104.9 3.1 102 354-459 21-128 (202)
66 2qby_B CDC6 homolog 3, cell di 98.9 3.2E-10 1.1E-14 114.8 3.3 99 357-461 19-148 (384)
67 1in4_A RUVB, holliday junction 98.9 4.3E-10 1.5E-14 113.1 4.0 96 354-460 21-116 (334)
68 1r6b_X CLPA protein; AAA+, N-t 98.9 1.2E-09 4.2E-14 121.2 7.7 100 354-462 182-294 (758)
69 1iqp_A RFCS; clamp loader, ext 98.9 5.8E-10 2E-14 110.1 4.1 98 354-461 21-125 (327)
70 2qby_A CDC6 homolog 1, cell di 98.9 5.5E-10 1.9E-14 112.4 3.3 106 352-461 14-143 (386)
71 2r44_A Uncharacterized protein 98.9 1.2E-10 4.2E-15 116.3 -1.8 96 357-462 26-125 (331)
72 1njg_A DNA polymerase III subu 98.9 2.3E-09 7.9E-14 99.8 6.7 99 355-460 20-140 (250)
73 1g41_A Heat shock protein HSLU 98.9 6.1E-10 2.1E-14 116.0 2.8 98 358-460 15-121 (444)
74 1sxj_B Activator 1 37 kDa subu 98.9 1.3E-09 4.5E-14 107.3 5.0 96 354-462 17-123 (323)
75 3ec2_A DNA replication protein 98.8 8.2E-10 2.8E-14 100.5 3.0 100 354-458 6-112 (180)
76 1jr3_A DNA polymerase III subu 98.8 1.3E-09 4.5E-14 109.8 4.7 101 354-461 12-134 (373)
77 2z4s_A Chromosomal replication 98.8 1.3E-09 4.6E-14 113.7 4.8 104 350-460 97-208 (440)
78 1g8p_A Magnesium-chelatase 38 98.8 6.6E-10 2.3E-14 111.1 2.1 53 352-412 18-70 (350)
79 3pxi_A Negative regulator of g 98.8 4.7E-09 1.6E-13 116.6 6.5 89 354-453 176-274 (758)
80 1sxj_C Activator 1 40 kDa subu 98.7 3.5E-09 1.2E-13 106.3 3.1 98 354-461 21-125 (340)
81 2gno_A DNA polymerase III, gam 98.7 1.5E-08 5.1E-13 100.8 5.3 91 362-464 1-100 (305)
82 3nbx_X ATPase RAVA; AAA+ ATPas 98.6 2.6E-09 8.7E-14 113.2 -1.2 95 358-462 22-125 (500)
83 1sxj_E Activator 1 40 kDa subu 98.6 1.1E-08 3.7E-13 102.6 3.2 51 354-411 10-60 (354)
84 2qgz_A Helicase loader, putati 98.6 4.8E-09 1.7E-13 104.4 0.5 101 354-459 120-227 (308)
85 2kjq_A DNAA-related protein; s 98.6 3.5E-08 1.2E-12 87.7 4.5 59 387-460 36-97 (149)
86 1w5s_A Origin recognition comp 98.5 8.9E-08 3E-12 97.5 7.1 105 354-460 18-152 (412)
87 1a5t_A Delta prime, HOLB; zinc 98.5 1.2E-07 4.1E-12 95.1 5.7 75 388-462 25-124 (334)
88 3f9v_A Minichromosome maintena 98.5 3.8E-09 1.3E-13 114.4 -5.7 70 389-462 329-407 (595)
89 1tue_A Replication protein E1; 98.3 2.5E-07 8.6E-12 86.5 3.9 29 388-416 59-87 (212)
90 3cmw_A Protein RECA, recombina 98.3 4.4E-07 1.5E-11 107.5 6.5 110 352-462 1014-1176(1706)
91 3k1j_A LON protease, ATP-depen 98.3 1.4E-07 4.9E-12 102.2 0.9 49 354-412 37-85 (604)
92 2vhj_A Ntpase P4, P4; non- hyd 98.2 8.8E-07 3E-11 88.4 4.6 71 388-461 124-197 (331)
93 2r2a_A Uncharacterized protein 98.1 9.7E-07 3.3E-11 82.3 3.3 74 389-462 7-103 (199)
94 2fna_A Conserved hypothetical 98.0 2.8E-06 9.6E-11 84.1 4.5 53 357-421 12-64 (357)
95 4akg_A Glutathione S-transfera 98.0 5.8E-06 2E-10 102.0 6.4 98 357-461 1243-1351(2695)
96 2qen_A Walker-type ATPase; unk 97.9 7.8E-06 2.7E-10 80.8 4.9 45 358-412 12-56 (350)
97 3cmu_A Protein RECA, recombina 97.8 2E-05 6.9E-10 94.6 6.3 74 387-461 1427-1520(2050)
98 3dm5_A SRP54, signal recogniti 97.6 7.3E-05 2.5E-09 77.7 6.9 73 386-459 99-195 (443)
99 1ye8_A Protein THEP1, hypothet 97.6 5E-05 1.7E-09 69.2 4.6 24 389-412 2-25 (178)
100 2p5t_B PEZT; postsegregational 97.5 3.5E-05 1.2E-09 73.9 3.5 40 384-423 29-68 (253)
101 1u0j_A DNA replication protein 97.5 4.1E-05 1.4E-09 74.4 3.6 24 388-411 105-128 (267)
102 3kb2_A SPBC2 prophage-derived 97.5 5E-05 1.7E-09 67.2 3.7 28 389-416 3-30 (173)
103 3trf_A Shikimate kinase, SK; a 97.5 3.3E-05 1.1E-09 69.7 2.5 31 388-418 6-36 (185)
104 4akg_A Glutathione S-transfera 97.5 9E-05 3.1E-09 91.6 6.7 88 359-460 624-711 (2695)
105 2orw_A Thymidine kinase; TMTK, 97.5 2.4E-05 8.2E-10 71.7 1.0 70 389-460 5-90 (184)
106 1gvn_B Zeta; postsegregational 97.5 8.2E-05 2.8E-09 72.9 4.7 57 364-420 10-66 (287)
107 1qhx_A CPT, protein (chloramph 97.4 4.5E-05 1.5E-09 68.3 2.5 30 388-417 4-33 (178)
108 2cvh_A DNA repair and recombin 97.4 8.7E-05 3E-09 68.4 4.5 35 388-422 21-55 (220)
109 1n0w_A DNA repair protein RAD5 97.4 0.00017 5.7E-09 67.6 6.3 35 388-422 25-68 (243)
110 3vaa_A Shikimate kinase, SK; s 97.4 5.8E-05 2E-09 69.4 2.6 31 388-418 26-56 (199)
111 1svm_A Large T antigen; AAA+ f 97.3 0.0001 3.4E-09 75.3 3.7 62 387-460 169-230 (377)
112 3iij_A Coilin-interacting nucl 97.3 7.7E-05 2.6E-09 67.1 2.6 31 388-418 12-42 (180)
113 3upu_A ATP-dependent DNA helic 97.3 8.8E-05 3E-09 77.4 3.3 49 355-411 21-69 (459)
114 2b8t_A Thymidine kinase; deoxy 97.3 0.00013 4.4E-09 69.1 4.1 71 389-459 14-102 (223)
115 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00017 5.7E-09 66.8 4.9 24 388-411 24-47 (235)
116 2i3b_A HCR-ntpase, human cance 97.3 5.7E-05 1.9E-09 69.6 1.5 23 389-411 3-25 (189)
117 1zuh_A Shikimate kinase; alpha 97.3 8.7E-05 3E-09 66.0 2.4 31 388-418 8-38 (168)
118 1u94_A RECA protein, recombina 97.3 0.00021 7.1E-09 72.3 5.4 73 388-460 64-155 (356)
119 3kl4_A SRP54, signal recogniti 97.3 0.00029 1E-08 73.1 6.6 73 386-459 96-192 (433)
120 2zr9_A Protein RECA, recombina 97.3 0.0002 6.9E-09 72.2 5.2 73 388-460 62-153 (349)
121 1via_A Shikimate kinase; struc 97.3 9.6E-05 3.3E-09 66.2 2.5 29 389-417 6-34 (175)
122 3e1s_A Exodeoxyribonuclease V, 97.2 7.4E-05 2.5E-09 80.4 1.8 72 388-459 205-292 (574)
123 2iyv_A Shikimate kinase, SK; t 97.2 0.00011 3.7E-09 66.3 2.5 30 389-418 4-33 (184)
124 3lw7_A Adenylate kinase relate 97.2 0.0001 3.5E-09 64.9 2.0 29 389-418 3-31 (179)
125 3hr8_A Protein RECA; alpha and 97.2 0.00023 8E-09 72.0 4.8 73 388-460 62-153 (356)
126 1kag_A SKI, shikimate kinase I 97.2 0.00013 4.3E-09 65.0 2.5 29 388-416 5-33 (173)
127 3f8t_A Predicted ATPase involv 97.2 1.6E-05 5.5E-10 83.0 -4.0 95 360-462 215-316 (506)
128 1xp8_A RECA protein, recombina 97.2 0.00027 9.2E-09 71.8 5.1 73 388-460 75-166 (366)
129 2rhm_A Putative kinase; P-loop 97.2 0.00012 4.3E-09 66.0 2.3 30 388-417 6-35 (193)
130 1y63_A LMAJ004144AAA protein; 97.2 0.00012 4.1E-09 66.4 2.2 31 388-418 11-42 (184)
131 1zp6_A Hypothetical protein AT 97.2 8.5E-05 2.9E-09 67.2 1.0 34 388-421 10-43 (191)
132 1vma_A Cell division protein F 97.1 0.00045 1.5E-08 68.4 6.1 35 386-420 103-140 (306)
133 2cdn_A Adenylate kinase; phosp 97.1 0.00018 6E-09 66.0 2.9 31 388-418 21-51 (201)
134 1tev_A UMP-CMP kinase; ploop, 97.1 0.00015 5.1E-09 65.4 2.3 29 388-416 4-32 (196)
135 2z43_A DNA repair and recombin 97.1 0.00047 1.6E-08 68.6 5.9 35 388-422 108-151 (324)
136 1e6c_A Shikimate kinase; phosp 97.1 0.00017 5.7E-09 64.1 2.4 29 389-417 4-32 (173)
137 2c95_A Adenylate kinase 1; tra 97.1 0.00017 5.7E-09 65.4 2.3 29 388-416 10-38 (196)
138 2v3c_C SRP54, signal recogniti 97.1 0.00046 1.6E-08 71.6 5.7 35 387-421 99-136 (432)
139 3cm0_A Adenylate kinase; ATP-b 97.1 0.00018 6.2E-09 64.7 2.3 29 389-417 6-34 (186)
140 1ly1_A Polynucleotide kinase; 97.0 0.00017 5.8E-09 64.3 1.8 29 388-416 3-32 (181)
141 2vli_A Antibiotic resistance p 97.0 0.00019 6.5E-09 64.3 2.1 29 388-416 6-34 (183)
142 1aky_A Adenylate kinase; ATP:A 97.0 0.00021 7.3E-09 66.5 2.5 30 388-417 5-34 (220)
143 3t61_A Gluconokinase; PSI-biol 97.0 0.00025 8.4E-09 65.1 2.7 29 388-416 19-47 (202)
144 3cmu_A Protein RECA, recombina 97.0 0.00051 1.7E-08 82.7 6.1 73 388-460 1082-1173(2050)
145 1z6t_A APAF-1, apoptotic prote 97.0 0.00068 2.3E-08 72.4 6.6 47 357-409 123-169 (591)
146 1kht_A Adenylate kinase; phosp 97.0 0.00017 5.9E-09 64.8 1.6 29 389-417 5-38 (192)
147 3dl0_A Adenylate kinase; phosp 97.0 0.00021 7.3E-09 66.1 2.3 30 389-418 2-31 (216)
148 2ze6_A Isopentenyl transferase 97.0 0.00022 7.6E-09 68.4 2.3 29 389-417 3-31 (253)
149 2px0_A Flagellar biosynthesis 97.0 0.0015 5E-08 64.3 8.3 36 387-422 105-144 (296)
150 2pt5_A Shikimate kinase, SK; a 97.0 0.00024 8.4E-09 62.8 2.4 29 389-417 2-30 (168)
151 2bwj_A Adenylate kinase 5; pho 97.0 0.0002 7E-09 64.9 1.8 29 388-416 13-41 (199)
152 1ukz_A Uridylate kinase; trans 97.0 0.00028 9.6E-09 64.5 2.7 30 388-417 16-45 (203)
153 3fb4_A Adenylate kinase; psych 97.0 0.00024 8.3E-09 65.7 2.3 29 389-417 2-30 (216)
154 2fz4_A DNA repair protein RAD2 97.0 0.00059 2E-08 64.7 4.9 30 389-418 110-139 (237)
155 1zak_A Adenylate kinase; ATP:A 97.0 0.00028 9.4E-09 65.8 2.4 30 388-417 6-35 (222)
156 1knq_A Gluconate kinase; ALFA/ 97.0 0.00032 1.1E-08 62.6 2.7 29 388-416 9-37 (175)
157 1ak2_A Adenylate kinase isoenz 96.9 0.0003 1E-08 66.3 2.6 31 388-418 17-47 (233)
158 1qf9_A UMP/CMP kinase, protein 96.9 0.00025 8.6E-09 63.8 1.9 29 388-416 7-35 (194)
159 1v5w_A DMC1, meiotic recombina 96.9 0.001 3.5E-08 66.8 6.6 35 388-422 123-166 (343)
160 1zd8_A GTP:AMP phosphotransfer 96.9 0.00027 9.3E-09 66.1 2.1 30 388-417 8-37 (227)
161 2eyu_A Twitching motility prot 96.9 0.00027 9.2E-09 68.4 2.0 24 388-411 26-49 (261)
162 2r8r_A Sensor protein; KDPD, P 96.9 0.00031 1.1E-08 66.5 2.3 32 389-420 8-42 (228)
163 3sr0_A Adenylate kinase; phosp 96.9 0.00031 1.1E-08 65.5 2.2 27 390-416 3-29 (206)
164 3be4_A Adenylate kinase; malar 96.9 0.00032 1.1E-08 65.3 2.3 30 389-418 7-36 (217)
165 3umf_A Adenylate kinase; rossm 96.9 0.00034 1.2E-08 65.9 2.4 29 388-416 30-58 (217)
166 3tlx_A Adenylate kinase 2; str 96.9 0.00034 1.2E-08 66.6 2.5 31 387-417 29-59 (243)
167 2yvu_A Probable adenylyl-sulfa 96.9 0.00066 2.2E-08 61.3 4.2 25 388-412 14-38 (186)
168 4a74_A DNA repair and recombin 96.9 0.0011 3.7E-08 61.4 5.6 24 388-411 26-49 (231)
169 4eun_A Thermoresistant glucoki 96.8 0.00042 1.4E-08 63.6 2.6 28 388-415 30-57 (200)
170 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00045 1.5E-08 69.7 2.8 31 389-419 26-56 (359)
171 3jvv_A Twitching mobility prot 96.8 0.00031 1.1E-08 71.1 1.5 23 389-411 125-147 (356)
172 1e4v_A Adenylate kinase; trans 96.8 0.00039 1.3E-08 64.5 2.1 30 389-418 2-31 (214)
173 2z0h_A DTMP kinase, thymidylat 96.8 0.00076 2.6E-08 61.0 3.9 30 390-419 3-35 (197)
174 3cmw_A Protein RECA, recombina 96.8 0.0011 3.7E-08 79.0 5.8 74 388-461 35-127 (1706)
175 2pez_A Bifunctional 3'-phospho 96.7 0.00044 1.5E-08 62.1 1.9 32 388-419 6-40 (179)
176 2jaq_A Deoxyguanosine kinase; 96.7 0.00051 1.7E-08 62.4 2.3 28 389-416 2-29 (205)
177 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.00033 1.1E-08 67.3 1.1 32 389-420 6-40 (260)
178 1cke_A CK, MSSA, protein (cyti 96.7 0.00054 1.8E-08 63.6 2.4 27 389-415 7-33 (227)
179 2yhs_A FTSY, cell division pro 96.7 0.0029 9.9E-08 66.5 8.0 24 388-411 294-317 (503)
180 2dr3_A UPF0273 protein PH0284; 96.7 0.0014 4.7E-08 61.3 5.1 24 388-411 24-47 (247)
181 1zu4_A FTSY; GTPase, signal re 96.7 0.0032 1.1E-07 62.6 7.9 35 386-420 104-141 (320)
182 1nks_A Adenylate kinase; therm 96.7 0.0004 1.4E-08 62.4 1.1 24 389-412 3-26 (194)
183 2j37_W Signal recognition part 96.7 0.0019 6.5E-08 68.2 6.4 37 386-422 100-139 (504)
184 2xb4_A Adenylate kinase; ATP-b 96.7 0.00059 2E-08 63.9 2.3 30 389-418 2-31 (223)
185 1nn5_A Similar to deoxythymidy 96.7 0.00059 2E-08 62.6 2.1 26 388-413 10-35 (215)
186 2wwf_A Thymidilate kinase, put 96.6 0.00059 2E-08 62.6 2.1 27 388-414 11-37 (212)
187 2pbr_A DTMP kinase, thymidylat 96.6 0.00068 2.3E-08 61.0 2.4 30 389-418 2-34 (195)
188 2if2_A Dephospho-COA kinase; a 96.6 0.00057 1.9E-08 62.5 1.8 27 389-416 3-29 (204)
189 3io5_A Recombination and repai 96.6 0.0019 6.4E-08 64.3 5.4 77 384-460 25-125 (333)
190 1pzn_A RAD51, DNA repair and r 96.6 0.0022 7.5E-08 64.5 6.0 24 388-411 132-155 (349)
191 1g5t_A COB(I)alamin adenosyltr 96.6 0.0015 5.2E-08 60.4 4.4 31 388-418 29-62 (196)
192 1jjv_A Dephospho-COA kinase; P 96.6 0.00069 2.4E-08 62.1 2.0 27 389-416 4-30 (206)
193 2v54_A DTMP kinase, thymidylat 96.6 0.00071 2.4E-08 61.6 2.0 32 388-419 5-37 (204)
194 2plr_A DTMP kinase, probable t 96.5 0.0011 3.7E-08 60.6 2.8 27 388-414 5-31 (213)
195 3nwj_A ATSK2; P loop, shikimat 96.5 0.00094 3.2E-08 64.2 2.4 30 388-417 49-78 (250)
196 3ake_A Cytidylate kinase; CMP 96.5 0.00098 3.4E-08 60.8 2.4 28 389-416 4-31 (208)
197 3r20_A Cytidylate kinase; stru 96.5 0.00099 3.4E-08 63.4 2.5 27 389-415 11-37 (233)
198 3lda_A DNA repair protein RAD5 96.5 0.0032 1.1E-07 64.6 6.5 23 388-410 179-201 (400)
199 3crm_A TRNA delta(2)-isopenten 96.5 0.00078 2.7E-08 67.2 1.8 31 388-418 6-36 (323)
200 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.00081 2.8E-08 67.2 1.9 69 388-457 172-251 (330)
201 2bbw_A Adenylate kinase 4, AK4 96.4 0.0011 3.9E-08 62.7 2.7 27 388-414 28-54 (246)
202 2ewv_A Twitching motility prot 96.4 0.0012 4E-08 67.1 2.9 24 388-411 137-160 (372)
203 3uie_A Adenylyl-sulfate kinase 96.4 0.0013 4.3E-08 60.3 2.6 24 388-411 26-49 (200)
204 1uj2_A Uridine-cytidine kinase 96.4 0.00098 3.4E-08 63.5 1.9 28 388-415 23-50 (252)
205 2i1q_A DNA repair and recombin 96.4 0.0022 7.5E-08 63.4 4.5 23 388-410 99-121 (322)
206 1w4r_A Thymidine kinase; type 96.4 0.0013 4.3E-08 60.9 2.5 67 389-458 22-103 (195)
207 3vkg_A Dynein heavy chain, cyt 96.4 0.0034 1.2E-07 78.6 7.0 63 390-459 607-669 (3245)
208 2qor_A Guanylate kinase; phosp 96.3 0.0015 5E-08 60.1 2.6 27 386-412 11-37 (204)
209 3e70_C DPA, signal recognition 96.3 0.0061 2.1E-07 60.8 7.3 25 387-411 129-153 (328)
210 2ged_A SR-beta, signal recogni 96.3 0.0037 1.3E-07 56.0 5.1 24 388-411 49-72 (193)
211 2xxa_A Signal recognition part 96.3 0.0045 1.5E-07 64.2 6.3 73 386-459 99-196 (433)
212 2grj_A Dephospho-COA kinase; T 96.3 0.0014 4.7E-08 60.4 2.2 29 389-417 14-42 (192)
213 4e22_A Cytidylate kinase; P-lo 96.2 0.0017 5.9E-08 62.0 2.7 27 389-415 29-55 (252)
214 1uf9_A TT1252 protein; P-loop, 96.2 0.0015 5E-08 59.4 1.9 28 388-416 9-36 (203)
215 3sfz_A APAF-1, apoptotic pepti 96.2 0.0046 1.6E-07 71.1 6.5 48 357-410 123-170 (1249)
216 3p32_A Probable GTPase RV1496/ 96.2 0.0081 2.8E-07 60.3 7.4 33 388-420 80-115 (355)
217 1j8m_F SRP54, signal recogniti 96.2 0.0046 1.6E-07 60.8 5.4 71 388-459 99-193 (297)
218 2bdt_A BH3686; alpha-beta prot 96.2 0.0018 6E-08 58.5 2.2 25 389-413 4-28 (189)
219 3tau_A Guanylate kinase, GMP k 96.2 0.0019 6.4E-08 59.7 2.4 25 388-412 9-33 (208)
220 2h92_A Cytidylate kinase; ross 96.1 0.0021 7.1E-08 59.4 2.6 28 389-416 5-32 (219)
221 1xx6_A Thymidine kinase; NESG, 96.1 0.0015 5E-08 60.2 1.5 69 389-459 10-94 (191)
222 1ex7_A Guanylate kinase; subst 96.1 0.0023 7.8E-08 58.7 2.7 23 389-411 3-25 (186)
223 1q3t_A Cytidylate kinase; nucl 96.1 0.0022 7.6E-08 60.3 2.6 28 388-415 17-44 (236)
224 2j41_A Guanylate kinase; GMP, 96.1 0.002 6.9E-08 58.6 2.3 24 388-411 7-30 (207)
225 2r6a_A DNAB helicase, replicat 96.1 0.0053 1.8E-07 63.8 5.7 33 388-420 204-240 (454)
226 1vht_A Dephospho-COA kinase; s 96.1 0.0021 7.1E-08 59.5 2.2 28 389-417 6-33 (218)
227 1kgd_A CASK, peripheral plasma 96.1 0.0024 8.4E-08 57.5 2.6 25 388-412 6-30 (180)
228 3a8t_A Adenylate isopentenyltr 96.1 0.0016 5.4E-08 65.3 1.4 28 389-416 42-69 (339)
229 1ltq_A Polynucleotide kinase; 96.1 0.0019 6.4E-08 62.8 1.9 29 388-416 3-32 (301)
230 3c8u_A Fructokinase; YP_612366 96.0 0.0044 1.5E-07 57.0 4.3 25 388-412 23-47 (208)
231 2qt1_A Nicotinamide riboside k 96.0 0.0018 6E-08 59.5 1.5 28 388-415 22-50 (207)
232 3tr0_A Guanylate kinase, GMP k 96.0 0.0024 8.1E-08 58.1 2.2 23 389-411 9-31 (205)
233 1rz3_A Hypothetical protein rb 95.9 0.0048 1.7E-07 56.5 4.0 24 388-411 23-46 (201)
234 3b6e_A Interferon-induced heli 95.9 0.0021 7.1E-08 58.7 1.4 23 388-410 49-71 (216)
235 1lvg_A Guanylate kinase, GMP k 95.9 0.003 1E-07 58.0 2.4 24 388-411 5-28 (198)
236 1ls1_A Signal recognition part 95.9 0.008 2.7E-07 58.9 5.6 33 387-419 98-133 (295)
237 3a00_A Guanylate kinase, GMP k 95.9 0.0031 1E-07 57.1 2.4 24 389-412 3-26 (186)
238 3foz_A TRNA delta(2)-isopenten 95.8 0.0029 9.9E-08 62.7 2.2 29 388-416 11-39 (316)
239 3zvl_A Bifunctional polynucleo 95.8 0.0031 1E-07 64.9 2.4 29 388-416 259-287 (416)
240 1p9r_A General secretion pathw 95.8 0.009 3.1E-07 61.6 5.8 24 389-412 169-192 (418)
241 2q6t_A DNAB replication FORK h 95.8 0.0078 2.7E-07 62.3 5.3 33 388-420 201-237 (444)
242 2f6r_A COA synthase, bifunctio 95.8 0.003 1E-07 61.4 2.0 29 388-417 76-104 (281)
243 2ffh_A Protein (FFH); SRP54, s 95.8 0.0092 3.1E-07 61.6 5.7 36 386-421 97-135 (425)
244 3fdi_A Uncharacterized protein 95.7 0.0035 1.2E-07 57.9 2.2 28 389-416 8-35 (201)
245 3asz_A Uridine kinase; cytidin 95.7 0.0031 1.1E-07 57.8 1.7 25 388-412 7-31 (211)
246 2oap_1 GSPE-2, type II secreti 95.7 0.0033 1.1E-07 66.6 2.0 25 388-412 261-285 (511)
247 1m7g_A Adenylylsulfate kinase; 95.7 0.0042 1.4E-07 57.3 2.5 25 388-412 26-50 (211)
248 3d3q_A TRNA delta(2)-isopenten 95.6 0.0035 1.2E-07 62.9 1.9 26 389-414 9-34 (340)
249 2j9r_A Thymidine kinase; TK1, 95.6 0.0077 2.6E-07 56.4 3.9 68 390-459 31-114 (214)
250 2a5y_B CED-4; apoptosis; HET: 95.6 0.013 4.6E-07 62.1 6.3 44 361-409 131-174 (549)
251 3exa_A TRNA delta(2)-isopenten 95.5 0.0037 1.3E-07 62.0 1.6 26 389-414 5-30 (322)
252 3ney_A 55 kDa erythrocyte memb 95.5 0.0057 1.9E-07 56.6 2.7 25 388-412 20-44 (197)
253 3gmt_A Adenylate kinase; ssgci 95.4 0.0056 1.9E-07 58.0 2.4 29 390-418 11-39 (230)
254 3eph_A TRNA isopentenyltransfe 95.4 0.0049 1.7E-07 63.2 2.0 28 388-415 3-30 (409)
255 4gp7_A Metallophosphoesterase; 95.4 0.0049 1.7E-07 55.1 1.8 18 389-406 11-28 (171)
256 2ehv_A Hypothetical protein PH 95.4 0.0053 1.8E-07 57.4 2.0 21 388-408 31-51 (251)
257 2gza_A Type IV secretion syste 95.4 0.0068 2.3E-07 61.2 2.9 25 388-412 176-200 (361)
258 1nrj_B SR-beta, signal recogni 95.3 0.014 4.9E-07 53.2 4.9 24 388-411 13-36 (218)
259 1z6g_A Guanylate kinase; struc 95.3 0.0068 2.3E-07 56.5 2.5 24 388-411 24-47 (218)
260 4b3f_X DNA-binding protein smu 95.3 0.006 2.1E-07 66.2 2.4 22 390-411 208-229 (646)
261 2qmh_A HPR kinase/phosphorylas 95.3 0.0057 2E-07 56.8 1.9 25 388-412 35-59 (205)
262 1odf_A YGR205W, hypothetical 3 95.3 0.012 4E-07 57.7 4.2 25 388-412 32-56 (290)
263 1znw_A Guanylate kinase, GMP k 95.3 0.0065 2.2E-07 55.8 2.2 23 389-411 22-44 (207)
264 1bif_A 6-phosphofructo-2-kinas 95.3 0.0099 3.4E-07 62.0 3.8 25 388-412 40-64 (469)
265 2zts_A Putative uncharacterize 95.3 0.0088 3E-07 55.7 3.1 33 388-420 31-67 (251)
266 3ice_A Transcription terminati 95.3 0.015 5E-07 59.4 4.9 24 388-411 175-198 (422)
267 2jeo_A Uridine-cytidine kinase 95.2 0.0071 2.4E-07 57.2 2.4 26 389-414 27-52 (245)
268 1sky_E F1-ATPase, F1-ATP synth 95.2 0.014 4.9E-07 60.8 4.8 23 389-411 153-175 (473)
269 1a7j_A Phosphoribulokinase; tr 95.2 0.004 1.4E-07 61.0 0.5 24 389-412 7-30 (290)
270 1gtv_A TMK, thymidylate kinase 95.2 0.0031 1.1E-07 57.7 -0.2 23 390-412 3-25 (214)
271 1htw_A HI0065; nucleotide-bind 95.2 0.0077 2.6E-07 53.5 2.3 23 389-411 35-57 (158)
272 4a1f_A DNAB helicase, replicat 95.1 0.015 5.3E-07 58.1 4.7 33 388-420 47-82 (338)
273 1qde_A EIF4A, translation init 95.1 0.013 4.3E-07 54.0 3.7 16 388-403 52-67 (224)
274 3b9q_A Chloroplast SRP recepto 95.1 0.014 4.6E-07 57.5 4.0 25 387-411 100-124 (302)
275 2og2_A Putative signal recogni 95.0 0.014 4.8E-07 58.9 4.1 25 387-411 157-181 (359)
276 4eaq_A DTMP kinase, thymidylat 95.0 0.0089 3E-07 56.3 2.4 24 389-412 28-51 (229)
277 2qm8_A GTPase/ATPase; G protei 95.0 0.018 6.2E-07 57.5 4.8 23 389-411 57-79 (337)
278 1cr0_A DNA primase/helicase; R 95.0 0.0083 2.8E-07 58.2 2.2 23 389-411 37-59 (296)
279 3aez_A Pantothenate kinase; tr 95.0 0.014 4.7E-07 57.8 3.8 24 388-411 91-114 (312)
280 3vkg_A Dynein heavy chain, cyt 95.0 0.032 1.1E-06 70.1 7.8 91 359-456 1624-1714(3245)
281 3k53_A Ferrous iron transport 95.0 0.016 5.3E-07 55.7 4.1 24 388-411 4-27 (271)
282 3def_A T7I23.11 protein; chlor 95.0 0.017 5.8E-07 55.1 4.3 24 388-411 37-60 (262)
283 3lnc_A Guanylate kinase, GMP k 94.9 0.0065 2.2E-07 56.8 1.2 23 389-411 29-52 (231)
284 1vec_A ATP-dependent RNA helic 94.9 0.017 5.8E-07 52.3 4.0 18 388-405 41-58 (206)
285 1x6v_B Bifunctional 3'-phospho 94.9 0.0084 2.9E-07 64.9 2.2 32 388-419 53-87 (630)
286 1vt4_I APAF-1 related killer D 94.9 0.043 1.5E-06 62.6 7.9 44 360-410 130-173 (1221)
287 3hdt_A Putative kinase; struct 94.9 0.0089 3E-07 56.3 2.1 29 389-417 16-44 (223)
288 3fe2_A Probable ATP-dependent 94.9 0.017 5.8E-07 54.2 4.0 18 388-405 67-84 (242)
289 1xjc_A MOBB protein homolog; s 94.9 0.011 3.7E-07 53.3 2.5 31 389-419 6-39 (169)
290 1s96_A Guanylate kinase, GMP k 94.8 0.011 3.7E-07 55.4 2.5 25 388-412 17-41 (219)
291 2fwr_A DNA repair protein RAD2 94.8 0.02 6.9E-07 59.0 4.7 26 389-414 110-135 (472)
292 3oiy_A Reverse gyrase helicase 94.8 0.015 5E-07 59.0 3.4 20 388-407 37-56 (414)
293 1rj9_A FTSY, signal recognitio 94.8 0.012 4.2E-07 58.0 2.7 25 387-411 102-126 (304)
294 2v9p_A Replication protein E1; 94.8 0.012 4E-07 58.2 2.5 24 388-411 127-150 (305)
295 3iuy_A Probable ATP-dependent 94.7 0.019 6.3E-07 53.2 3.7 18 388-405 58-75 (228)
296 1nlf_A Regulatory protein REPA 94.7 0.011 3.7E-07 57.0 2.0 24 388-411 31-54 (279)
297 2v6i_A RNA helicase; membrane, 94.6 0.018 6.3E-07 59.2 3.7 17 388-404 3-19 (431)
298 3vkw_A Replicase large subunit 94.6 0.0079 2.7E-07 62.3 0.8 22 388-409 162-183 (446)
299 3lxx_A GTPase IMAP family memb 94.6 0.025 8.7E-07 52.8 4.3 24 388-411 30-53 (239)
300 3bor_A Human initiation factor 94.5 0.015 5E-07 54.5 2.6 17 388-404 68-84 (237)
301 3ber_A Probable ATP-dependent 94.5 0.023 7.7E-07 53.8 3.9 18 388-405 81-98 (249)
302 3ly5_A ATP-dependent RNA helic 94.5 0.026 8.8E-07 53.9 4.2 18 388-405 92-109 (262)
303 1rif_A DAR protein, DNA helica 94.5 0.018 6.1E-07 55.4 3.0 22 389-410 130-151 (282)
304 4edh_A DTMP kinase, thymidylat 94.5 0.023 7.7E-07 53.0 3.6 23 389-411 8-30 (213)
305 2www_A Methylmalonic aciduria 94.4 0.05 1.7E-06 54.4 6.4 24 388-411 75-98 (349)
306 1h65_A Chloroplast outer envel 94.4 0.018 6.2E-07 55.2 3.0 23 388-410 40-62 (270)
307 3fmo_B ATP-dependent RNA helic 94.4 0.02 7E-07 55.9 3.4 18 387-404 131-148 (300)
308 2axn_A 6-phosphofructo-2-kinas 94.4 0.011 3.7E-07 62.7 1.4 26 388-413 36-61 (520)
309 1svi_A GTP-binding protein YSX 94.4 0.034 1.2E-06 49.5 4.5 23 388-410 24-46 (195)
310 3b85_A Phosphate starvation-in 94.3 0.016 5.4E-07 53.9 2.2 22 389-410 24-45 (208)
311 1hv8_A Putative ATP-dependent 94.3 0.028 9.6E-07 55.1 4.1 22 388-409 45-66 (367)
312 1t6n_A Probable ATP-dependent 94.3 0.031 1.1E-06 51.3 4.1 21 388-408 52-72 (220)
313 3v9p_A DTMP kinase, thymidylat 94.3 0.025 8.6E-07 53.3 3.5 23 389-411 27-49 (227)
314 3kta_A Chromosome segregation 94.3 0.017 5.7E-07 51.5 2.2 24 389-412 28-51 (182)
315 3pey_A ATP-dependent RNA helic 94.3 0.032 1.1E-06 55.3 4.4 20 388-407 45-64 (395)
316 1sq5_A Pantothenate kinase; P- 94.3 0.014 4.8E-07 57.4 1.8 24 389-412 82-105 (308)
317 1c9k_A COBU, adenosylcobinamid 94.3 0.012 3.9E-07 53.7 1.1 31 390-421 2-32 (180)
318 3tqc_A Pantothenate kinase; bi 94.2 0.036 1.2E-06 55.1 4.7 24 389-412 94-117 (321)
319 3thx_A DNA mismatch repair pro 94.2 0.033 1.1E-06 63.0 4.9 22 388-409 663-684 (934)
320 1gm5_A RECG; helicase, replica 94.2 0.064 2.2E-06 59.5 7.2 21 388-408 390-410 (780)
321 2va8_A SSO2462, SKI2-type heli 94.2 0.039 1.3E-06 60.3 5.3 19 388-406 47-65 (715)
322 2zj8_A DNA helicase, putative 94.2 0.027 9.3E-07 61.7 4.1 17 388-404 40-56 (720)
323 1g8f_A Sulfate adenylyltransfe 94.1 0.036 1.2E-06 58.5 4.7 26 388-413 396-421 (511)
324 3sop_A Neuronal-specific septi 94.0 0.017 6E-07 55.8 1.9 23 389-411 4-26 (270)
325 2p67_A LAO/AO transport system 94.0 0.04 1.4E-06 54.9 4.5 24 388-411 57-80 (341)
326 2f9l_A RAB11B, member RAS onco 94.0 0.02 6.9E-07 51.7 2.1 22 389-410 7-28 (199)
327 3fmp_B ATP-dependent RNA helic 94.0 0.051 1.8E-06 56.1 5.5 18 387-404 131-148 (479)
328 2dyk_A GTP-binding protein; GT 93.9 0.021 7.4E-07 48.9 2.1 23 389-411 3-25 (161)
329 3hjn_A DTMP kinase, thymidylat 93.9 0.062 2.1E-06 49.3 5.3 30 390-419 3-35 (197)
330 1p5z_B DCK, deoxycytidine kina 93.9 0.0099 3.4E-07 56.7 -0.1 28 388-415 25-53 (263)
331 1np6_A Molybdopterin-guanine d 93.9 0.023 7.8E-07 51.3 2.3 23 389-411 8-30 (174)
332 1jr3_D DNA polymerase III, del 93.9 0.014 4.7E-07 57.9 0.9 64 388-461 19-92 (343)
333 2onk_A Molybdate/tungstate ABC 93.9 0.019 6.6E-07 54.5 1.8 24 388-411 25-48 (240)
334 3thx_B DNA mismatch repair pro 93.9 0.026 8.9E-07 63.7 3.1 23 388-410 674-696 (918)
335 2orv_A Thymidine kinase; TP4A 93.8 0.039 1.3E-06 52.2 3.9 68 389-459 21-103 (234)
336 3tif_A Uncharacterized ABC tra 93.8 0.016 5.5E-07 54.7 1.3 23 389-411 33-55 (235)
337 2gk6_A Regulator of nonsense t 93.8 0.022 7.4E-07 61.7 2.4 23 389-411 197-219 (624)
338 3bh0_A DNAB-like replicative h 93.8 0.026 9E-07 55.6 2.8 33 388-420 69-104 (315)
339 3iby_A Ferrous iron transport 93.8 0.041 1.4E-06 52.5 4.1 22 389-410 3-24 (256)
340 2pcj_A ABC transporter, lipopr 93.8 0.016 5.4E-07 54.4 1.0 23 389-411 32-54 (224)
341 3rc3_A ATP-dependent RNA helic 93.8 0.014 4.7E-07 63.9 0.7 18 388-405 156-173 (677)
342 1oix_A RAS-related protein RAB 93.7 0.022 7.5E-07 51.3 1.9 23 389-411 31-53 (191)
343 1z2a_A RAS-related protein RAB 93.7 0.024 8.4E-07 48.8 2.1 23 389-411 7-29 (168)
344 2iut_A DNA translocase FTSK; n 93.7 0.069 2.4E-06 57.0 5.9 24 388-411 215-238 (574)
345 1u8z_A RAS-related protein RAL 93.7 0.026 8.9E-07 48.4 2.2 23 388-410 5-27 (168)
346 1kao_A RAP2A; GTP-binding prot 93.7 0.026 8.8E-07 48.4 2.2 22 389-410 5-26 (167)
347 3i8s_A Ferrous iron transport 93.7 0.05 1.7E-06 52.4 4.4 22 389-410 5-26 (274)
348 4a4z_A Antiviral helicase SKI2 93.7 0.053 1.8E-06 61.9 5.3 19 388-406 55-73 (997)
349 2cbz_A Multidrug resistance-as 93.6 0.019 6.5E-07 54.3 1.3 24 388-411 32-55 (237)
350 1w36_D RECD, exodeoxyribonucle 93.6 0.025 8.5E-07 61.0 2.4 24 388-411 165-188 (608)
351 2ocp_A DGK, deoxyguanosine kin 93.6 0.024 8.3E-07 53.2 2.0 23 389-411 4-26 (241)
352 1s2m_A Putative ATP-dependent 93.6 0.046 1.6E-06 54.6 4.2 20 388-407 59-78 (400)
353 3eiq_A Eukaryotic initiation f 93.6 0.05 1.7E-06 54.5 4.4 19 388-406 78-96 (414)
354 3l9o_A ATP-dependent RNA helic 93.6 0.036 1.2E-06 63.9 3.8 20 388-407 200-219 (1108)
355 2ce2_X GTPase HRAS; signaling 93.5 0.025 8.7E-07 48.3 1.8 23 389-411 5-27 (166)
356 1b0u_A Histidine permease; ABC 93.5 0.02 7E-07 55.0 1.3 23 389-411 34-56 (262)
357 1ek0_A Protein (GTP-binding pr 93.5 0.028 9.7E-07 48.4 2.1 24 388-411 4-27 (170)
358 1sgw_A Putative ABC transporte 93.5 0.021 7.2E-07 53.3 1.3 23 389-411 37-59 (214)
359 1z0j_A RAB-22, RAS-related pro 93.4 0.029 1E-06 48.4 2.2 24 388-411 7-30 (170)
360 1wb9_A DNA mismatch repair pro 93.4 0.06 2.1E-06 59.9 5.1 23 388-410 608-630 (800)
361 3tmk_A Thymidylate kinase; pho 93.4 0.043 1.5E-06 51.3 3.4 27 389-415 7-33 (216)
362 3tqf_A HPR(Ser) kinase; transf 93.4 0.026 8.8E-07 51.2 1.7 23 388-410 17-39 (181)
363 1wms_A RAB-9, RAB9, RAS-relate 93.4 0.03 1E-06 48.9 2.2 23 388-410 8-30 (177)
364 3fvq_A Fe(3+) IONS import ATP- 93.4 0.023 7.8E-07 57.4 1.5 23 389-411 32-54 (359)
365 1g6h_A High-affinity branched- 93.4 0.022 7.4E-07 54.6 1.3 23 389-411 35-57 (257)
366 1yrb_A ATP(GTP)binding protein 93.4 0.042 1.4E-06 51.8 3.3 34 388-421 15-50 (262)
367 2zu0_C Probable ATP-dependent 93.4 0.026 8.9E-07 54.4 1.8 22 389-410 48-69 (267)
368 1lw7_A Transcriptional regulat 93.4 0.026 8.8E-07 56.7 1.9 26 388-413 171-196 (365)
369 1ky3_A GTP-binding protein YPT 93.3 0.031 1.1E-06 48.8 2.2 24 388-411 9-32 (182)
370 3gfo_A Cobalt import ATP-bindi 93.3 0.023 7.7E-07 55.2 1.3 23 389-411 36-58 (275)
371 2d2e_A SUFC protein; ABC-ATPas 93.3 0.026 9.1E-07 53.7 1.8 22 389-410 31-52 (250)
372 1m8p_A Sulfate adenylyltransfe 93.3 0.021 7.1E-07 61.3 1.1 33 388-420 397-433 (573)
373 2nzj_A GTP-binding protein REM 93.3 0.03 1E-06 48.7 2.0 22 389-410 6-27 (175)
374 1ji0_A ABC transporter; ATP bi 93.2 0.024 8E-07 53.8 1.3 23 389-411 34-56 (240)
375 1g16_A RAS-related protein SEC 93.2 0.03 1E-06 48.4 1.8 22 389-410 5-26 (170)
376 1mv5_A LMRA, multidrug resista 93.2 0.024 8.2E-07 53.8 1.3 24 388-411 29-52 (243)
377 2f1r_A Molybdopterin-guanine d 93.2 0.017 5.7E-07 52.0 0.2 23 389-411 4-26 (171)
378 1wp9_A ATP-dependent RNA helic 93.2 0.059 2E-06 54.4 4.3 23 389-411 25-47 (494)
379 2xgj_A ATP-dependent RNA helic 93.2 0.067 2.3E-06 61.1 5.2 19 388-406 102-120 (1010)
380 2ff7_A Alpha-hemolysin translo 93.2 0.024 8.2E-07 54.0 1.3 23 389-411 37-59 (247)
381 1z08_A RAS-related protein RAB 93.2 0.034 1.2E-06 48.1 2.1 23 388-410 7-29 (170)
382 2zej_A Dardarin, leucine-rich 93.2 0.027 9.2E-07 50.2 1.5 21 389-409 4-24 (184)
383 2erx_A GTP-binding protein DI- 93.2 0.031 1E-06 48.3 1.8 22 389-410 5-26 (172)
384 3rlf_A Maltose/maltodextrin im 93.2 0.028 9.7E-07 57.1 1.8 23 389-411 31-53 (381)
385 1ewq_A DNA mismatch repair pro 93.2 0.063 2.1E-06 59.5 4.7 24 388-411 577-600 (765)
386 3lxw_A GTPase IMAP family memb 93.2 0.047 1.6E-06 51.7 3.3 23 388-410 22-44 (247)
387 3iev_A GTP-binding protein ERA 93.2 0.069 2.4E-06 52.3 4.6 26 385-410 8-33 (308)
388 2olj_A Amino acid ABC transpor 93.2 0.025 8.6E-07 54.5 1.3 23 389-411 52-74 (263)
389 2wji_A Ferrous iron transport 93.2 0.032 1.1E-06 48.7 2.0 22 389-410 5-26 (165)
390 1z47_A CYSA, putative ABC-tran 93.1 0.029 9.9E-07 56.5 1.8 23 389-411 43-65 (355)
391 2pze_A Cystic fibrosis transme 93.1 0.026 8.8E-07 53.1 1.3 23 389-411 36-58 (229)
392 3con_A GTPase NRAS; structural 93.1 0.034 1.2E-06 49.4 2.0 24 388-411 22-45 (190)
393 1r8s_A ADP-ribosylation factor 93.1 0.036 1.2E-06 47.7 2.1 23 389-411 2-24 (164)
394 2it1_A 362AA long hypothetical 93.1 0.03 1E-06 56.5 1.8 23 389-411 31-53 (362)
395 1c1y_A RAS-related protein RAP 93.1 0.036 1.2E-06 47.7 2.1 22 389-410 5-26 (167)
396 1r2q_A RAS-related protein RAB 93.1 0.036 1.2E-06 47.7 2.1 23 388-410 7-29 (170)
397 2p6r_A Afuhel308 helicase; pro 93.1 0.041 1.4E-06 60.1 3.0 18 388-405 41-58 (702)
398 3bc1_A RAS-related protein RAB 93.1 0.036 1.2E-06 48.9 2.1 23 388-410 12-34 (195)
399 2yyz_A Sugar ABC transporter, 93.1 0.03 1E-06 56.5 1.8 23 389-411 31-53 (359)
400 2qi9_C Vitamin B12 import ATP- 93.0 0.027 9.3E-07 53.8 1.3 23 389-411 28-50 (249)
401 2ihy_A ABC transporter, ATP-bi 93.0 0.027 9.2E-07 54.7 1.3 23 389-411 49-71 (279)
402 2ixe_A Antigen peptide transpo 93.0 0.027 9.1E-07 54.5 1.3 23 389-411 47-69 (271)
403 1vpl_A ABC transporter, ATP-bi 93.0 0.027 9.3E-07 54.0 1.3 23 389-411 43-65 (256)
404 2hxs_A RAB-26, RAS-related pro 93.0 0.038 1.3E-06 48.2 2.1 23 388-410 7-29 (178)
405 1v43_A Sugar-binding transport 93.0 0.032 1.1E-06 56.5 1.8 23 389-411 39-61 (372)
406 2ghi_A Transport protein; mult 92.9 0.028 9.5E-07 54.0 1.3 24 388-411 47-70 (260)
407 3q85_A GTP-binding protein REM 92.9 0.037 1.2E-06 47.9 2.0 21 389-409 4-24 (169)
408 2wjg_A FEOB, ferrous iron tran 92.9 0.035 1.2E-06 49.1 1.8 23 388-410 8-30 (188)
409 2j0s_A ATP-dependent RNA helic 92.9 0.073 2.5E-06 53.4 4.4 19 388-406 75-93 (410)
410 1g29_1 MALK, maltose transport 92.9 0.033 1.1E-06 56.4 1.8 23 389-411 31-53 (372)
411 4g1u_C Hemin import ATP-bindin 92.9 0.031 1E-06 53.9 1.5 23 389-411 39-61 (266)
412 3q72_A GTP-binding protein RAD 92.8 0.033 1.1E-06 48.1 1.5 21 389-409 4-24 (166)
413 3tw8_B RAS-related protein RAB 92.8 0.036 1.2E-06 48.3 1.8 22 388-409 10-31 (181)
414 2wsm_A Hydrogenase expression/ 92.8 0.059 2E-06 49.2 3.3 24 388-411 31-54 (221)
415 1f2t_A RAD50 ABC-ATPase; DNA d 92.8 0.039 1.3E-06 48.2 2.0 23 389-411 25-47 (149)
416 3ld9_A DTMP kinase, thymidylat 92.8 0.042 1.4E-06 51.7 2.3 26 388-413 22-47 (223)
417 1z0f_A RAB14, member RAS oncog 92.8 0.041 1.4E-06 47.9 2.1 24 388-411 16-39 (179)
418 3tbk_A RIG-I helicase domain; 92.8 0.08 2.7E-06 55.0 4.7 22 388-409 20-41 (555)
419 1upt_A ARL1, ADP-ribosylation 92.8 0.041 1.4E-06 47.6 2.1 23 388-410 8-30 (171)
420 2yz2_A Putative ABC transporte 92.8 0.03 1E-06 53.9 1.3 23 389-411 35-57 (266)
421 1xti_A Probable ATP-dependent 92.8 0.073 2.5E-06 52.8 4.2 20 388-407 46-65 (391)
422 2oil_A CATX-8, RAS-related pro 92.8 0.042 1.4E-06 49.0 2.1 24 388-411 26-49 (193)
423 1tq4_A IIGP1, interferon-induc 92.8 0.051 1.7E-06 55.8 3.0 23 389-411 71-93 (413)
424 1qhl_A Protein (cell division 92.8 0.026 8.8E-07 53.3 0.8 23 390-412 30-52 (227)
425 2y8e_A RAB-protein 6, GH09086P 92.8 0.038 1.3E-06 48.1 1.8 23 388-410 15-37 (179)
426 4dsu_A GTPase KRAS, isoform 2B 92.8 0.042 1.5E-06 48.3 2.2 23 389-411 6-28 (189)
427 2v1x_A ATP-dependent DNA helic 92.7 0.39 1.3E-05 51.4 10.1 20 388-407 60-79 (591)
428 2nq2_C Hypothetical ABC transp 92.7 0.031 1.1E-06 53.5 1.3 23 389-411 33-55 (253)
429 3clv_A RAB5 protein, putative; 92.7 0.044 1.5E-06 48.6 2.2 22 389-410 9-30 (208)
430 3lv8_A DTMP kinase, thymidylat 92.7 0.04 1.4E-06 52.2 2.0 23 389-411 29-51 (236)
431 2a9k_A RAS-related protein RAL 92.7 0.044 1.5E-06 48.1 2.1 23 388-410 19-41 (187)
432 4i1u_A Dephospho-COA kinase; s 92.7 0.043 1.5E-06 51.2 2.1 28 389-417 11-38 (210)
433 2lkc_A Translation initiation 92.6 0.041 1.4E-06 48.0 1.9 23 388-410 9-31 (178)
434 4a2p_A RIG-I, retinoic acid in 92.6 0.076 2.6E-06 55.4 4.3 22 388-409 23-44 (556)
435 2fn4_A P23, RAS-related protei 92.6 0.041 1.4E-06 47.9 1.9 23 388-410 10-32 (181)
436 2wjy_A Regulator of nonsense t 92.6 0.042 1.4E-06 61.2 2.3 23 389-411 373-395 (800)
437 3d31_A Sulfate/molybdate ABC t 92.6 0.027 9.3E-07 56.6 0.7 23 389-411 28-50 (348)
438 2efe_B Small GTP-binding prote 92.6 0.046 1.6E-06 47.8 2.1 23 388-410 13-35 (181)
439 3l0o_A Transcription terminati 92.5 0.096 3.3E-06 53.4 4.6 23 389-411 177-199 (427)
440 2pjz_A Hypothetical protein ST 92.5 0.034 1.2E-06 53.5 1.3 23 389-411 32-54 (263)
441 3t1o_A Gliding protein MGLA; G 92.5 0.046 1.6E-06 48.4 2.0 24 388-411 15-38 (198)
442 2xau_A PRE-mRNA-splicing facto 92.5 0.11 3.6E-06 57.7 5.3 21 389-409 111-131 (773)
443 2g6b_A RAS-related protein RAB 92.5 0.048 1.6E-06 47.6 2.1 24 388-411 11-34 (180)
444 2bme_A RAB4A, RAS-related prot 92.4 0.044 1.5E-06 48.3 1.8 24 388-411 11-34 (186)
445 3kkq_A RAS-related protein M-R 92.4 0.053 1.8E-06 47.7 2.3 23 388-410 19-41 (183)
446 1m7b_A RND3/RHOE small GTP-bin 92.4 0.044 1.5E-06 48.5 1.8 23 388-410 8-30 (184)
447 3e2i_A Thymidine kinase; Zn-bi 92.4 0.04 1.4E-06 51.6 1.5 69 390-460 31-115 (219)
448 3bgw_A DNAB-like replicative h 92.4 0.046 1.6E-06 56.7 2.1 34 388-421 198-234 (444)
449 1mh1_A RAC1; GTP-binding, GTPa 92.4 0.05 1.7E-06 47.7 2.1 22 389-410 7-28 (186)
450 2gj8_A MNME, tRNA modification 92.4 0.042 1.4E-06 48.5 1.6 22 389-410 6-27 (172)
451 3gd7_A Fusion complex of cysti 92.3 0.039 1.3E-06 56.3 1.5 23 389-411 49-71 (390)
452 2bov_A RAla, RAS-related prote 92.2 0.056 1.9E-06 48.4 2.3 23 388-410 15-37 (206)
453 2gf9_A RAS-related protein RAB 92.2 0.054 1.8E-06 48.1 2.1 24 388-411 23-46 (189)
454 3cr8_A Sulfate adenylyltranfer 92.2 0.033 1.1E-06 59.4 0.8 25 388-412 370-394 (552)
455 4ag6_A VIRB4 ATPase, type IV s 92.2 0.054 1.8E-06 54.8 2.3 24 388-411 36-59 (392)
456 3tkl_A RAS-related protein RAB 92.2 0.054 1.9E-06 48.1 2.1 24 388-411 17-40 (196)
457 4tmk_A Protein (thymidylate ki 92.2 0.052 1.8E-06 50.5 2.0 23 389-411 5-27 (213)
458 2cxx_A Probable GTP-binding pr 92.1 0.044 1.5E-06 48.3 1.5 22 389-410 3-24 (190)
459 3bwd_D RAC-like GTP-binding pr 92.1 0.056 1.9E-06 47.3 2.1 23 388-410 9-31 (182)
460 3fho_A ATP-dependent RNA helic 92.1 0.096 3.3E-06 54.9 4.2 18 388-405 159-176 (508)
461 2npi_A Protein CLP1; CLP1-PCF1 92.1 0.048 1.7E-06 56.8 1.8 23 389-411 140-162 (460)
462 2hf9_A Probable hydrogenase ni 92.0 0.057 1.9E-06 49.5 2.1 24 388-411 39-62 (226)
463 1oxx_K GLCV, glucose, ABC tran 92.0 0.028 9.5E-07 56.6 -0.1 23 389-411 33-55 (353)
464 1x3s_A RAS-related protein RAB 92.0 0.058 2E-06 47.8 2.1 23 388-410 16-38 (195)
465 1yks_A Genome polyprotein [con 92.0 0.076 2.6E-06 54.7 3.2 17 388-404 9-25 (440)
466 2qag_B Septin-6, protein NEDD5 92.0 0.051 1.7E-06 56.1 1.9 23 389-411 44-66 (427)
467 1fuu_A Yeast initiation factor 92.0 0.057 2E-06 53.5 2.2 17 388-404 59-75 (394)
468 2atv_A RERG, RAS-like estrogen 92.0 0.06 2.1E-06 48.2 2.2 23 388-410 29-51 (196)
469 1zbd_A Rabphilin-3A; G protein 91.9 0.053 1.8E-06 48.7 1.8 23 388-410 9-31 (203)
470 2fg5_A RAB-22B, RAS-related pr 91.9 0.056 1.9E-06 48.3 1.9 24 388-411 24-47 (192)
471 1zd9_A ADP-ribosylation factor 91.9 0.06 2.1E-06 47.9 2.1 22 389-410 24-45 (188)
472 1z06_A RAS-related protein RAB 91.9 0.062 2.1E-06 47.7 2.2 23 388-410 21-43 (189)
473 1vg8_A RAS-related protein RAB 91.9 0.061 2.1E-06 48.3 2.2 24 388-411 9-32 (207)
474 1nij_A Hypothetical protein YJ 91.9 0.086 2.9E-06 51.9 3.4 23 389-411 6-28 (318)
475 1m2o_B GTP-binding protein SAR 91.9 0.055 1.9E-06 48.5 1.8 21 389-409 25-45 (190)
476 2a5j_A RAS-related protein RAB 91.9 0.062 2.1E-06 47.9 2.1 23 388-410 22-44 (191)
477 3ihw_A Centg3; RAS, centaurin, 91.9 0.062 2.1E-06 47.9 2.1 23 388-410 21-43 (184)
478 3dz8_A RAS-related protein RAB 91.9 0.058 2E-06 48.1 1.9 23 389-411 25-47 (191)
479 2xzl_A ATP-dependent helicase 91.9 0.057 2E-06 60.1 2.3 21 389-409 377-397 (802)
480 2ykg_A Probable ATP-dependent 91.9 0.12 4.1E-06 55.9 4.8 22 388-409 29-50 (696)
481 3pqc_A Probable GTP-binding pr 91.9 0.047 1.6E-06 48.3 1.3 24 388-411 24-47 (195)
482 3c5c_A RAS-like protein 12; GD 91.9 0.063 2.2E-06 47.9 2.2 22 389-410 23-44 (187)
483 2iwr_A Centaurin gamma 1; ANK 91.9 0.046 1.6E-06 47.8 1.2 23 388-410 8-30 (178)
484 3reg_A RHO-like small GTPase; 91.8 0.063 2.1E-06 47.9 2.1 24 388-411 24-47 (194)
485 1gku_B Reverse gyrase, TOP-RG; 91.8 0.061 2.1E-06 61.8 2.5 20 388-407 72-91 (1054)
486 2p5s_A RAS and EF-hand domain 91.8 0.063 2.2E-06 48.2 2.1 23 388-410 29-51 (199)
487 3t5g_A GTP-binding protein RHE 91.8 0.058 2E-06 47.3 1.8 23 388-410 7-29 (181)
488 4dzz_A Plasmid partitioning pr 91.8 0.16 5.5E-06 45.6 4.8 65 390-456 4-85 (206)
489 2bbs_A Cystic fibrosis transme 91.8 0.043 1.5E-06 53.6 1.0 24 388-411 65-88 (290)
490 2db3_A ATP-dependent RNA helic 91.7 0.12 4E-06 53.0 4.3 16 388-403 94-109 (434)
491 1dek_A Deoxynucleoside monopho 91.7 0.061 2.1E-06 51.1 2.0 26 390-415 4-29 (241)
492 3cph_A RAS-related protein SEC 91.7 0.066 2.3E-06 48.3 2.1 23 388-410 21-43 (213)
493 2qtf_A Protein HFLX, GTP-bindi 91.7 0.2 6.8E-06 50.5 5.8 23 388-410 180-202 (364)
494 1ksh_A ARF-like protein 2; sma 91.6 0.061 2.1E-06 47.5 1.8 23 388-410 19-41 (186)
495 1tf7_A KAIC; homohexamer, hexa 91.6 0.066 2.3E-06 56.5 2.3 38 385-422 37-78 (525)
496 2bcg_Y Protein YP2, GTP-bindin 91.6 0.062 2.1E-06 48.4 1.8 23 388-410 9-31 (206)
497 4bas_A ADP-ribosylation factor 91.6 0.063 2.2E-06 47.8 1.8 22 388-409 18-39 (199)
498 2obl_A ESCN; ATPase, hydrolase 91.6 0.061 2.1E-06 53.9 1.8 25 389-413 73-97 (347)
499 2gks_A Bifunctional SAT/APS ki 91.5 0.057 1.9E-06 57.5 1.7 25 388-412 373-397 (546)
500 1pui_A ENGB, probable GTP-bind 91.5 0.035 1.2E-06 50.2 -0.0 22 389-410 28-49 (210)
No 1
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.4e-22 Score=209.26 Aligned_cols=273 Identities=16% Similarity=0.227 Sum_probs=125.8
Q ss_pred hcccchhHHHHHhhcccHHHHhhcchhhhhhchhhhhhHHHHhhhhHHHHHHHHHhhHHHHhHhhhhhhhhhhhhhhhhc
Q 012305 149 QGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGR 228 (466)
Q Consensus 149 ~~a~~~d~l~r~r~q~E~e~~~~~~e~~~~~qees~~r~E~~r~~~~e~~~~~r~~~e~e~~~~~~~~~~~~~~~e~e~~ 228 (466)
...+++|+..++++.++...+...+++....+..+...++..++.+.+ ++..+....+. +++
T Consensus 12 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~-------e~~ 73 (437)
T 4b4t_L 12 LGETSGDNHTQQSHEQQPEQPQETEEHHEEEPSRVDPEQEAHNKALNQ-----------FKRKLLEHRRY-------DDQ 73 (437)
T ss_dssp ------------------------------------------------------------------CHHH-------HHH
T ss_pred hccccccchhhccccchhhhhHHhhhhhhhcchhcchhhHHHHHHHHH-----------HHHHHHHHHHH-------HHH
Confidence 446678888888888888888877776666666666667666666544 11111111111 111
Q ss_pred ccccccc-hhhhhhHHHHHhhchhHHHHHHHhhhhhhhhhhhhhhhccccceeeeechhhhhhhheeecccCceehhhhh
Q 012305 229 AHEAKLT-EDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYV 307 (466)
Q Consensus 229 ~~~~~~~-~d~~~~~~~~~~~~~r~~~l~~i~~~~~~l~~~~~~l~~d~~~~~~~v~~~~~~~~~V~~~k~g~~~~~~~v 307 (466)
.+..+.+ .++...-. ....-+..|++....+|..+..+ .|+..++...+|. .|.+ .+...+.
T Consensus 74 ~~~~~~~~~~l~~~~~------~~~~~~~~l~~~~~~vg~~~~~~-~~~~~iv~~~~g~------~~~v----~~~~~~~ 136 (437)
T 4b4t_L 74 LKQRRQNIRDLEKLYD------KTENDIKALQSIGQLIGEVMKEL-SEEKYIVKASSGP------RYIV----GVRNSVD 136 (437)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHSCCEEEEEEEECS-SSSCEEEEETTSC------EEEE----CBCSSSC
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhccCCceeeeheeee-cCCcEEEEECCCC------EEEE----ecccccC
Confidence 1111111 11211111 11123677888888888776664 4444443333221 1100 0111111
Q ss_pred hhhhCCCccccccccCCCchhhhhHHHHHHhhhccccccccCccccccCCCCeeeCcchHHHHHHHHHh-hcccc----c
Q 012305 308 NRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKA-TANTK----I 382 (466)
Q Consensus 308 ~~~lg~p~lvre~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vVg~~~~~~~l~~~~~~-~~~~~----~ 382 (466)
...+..+..|.-.. ..+.+...+....... .........+..+|+||.|.++.++.|.+.+.. +.++. .
T Consensus 137 ~~~l~~g~~v~~~~-~~~~~~~~l~~~~d~~-----~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~ 210 (437)
T 4b4t_L 137 RSKLKKGVRVTLDI-TTLTIMRILPRETDPL-----VYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRV 210 (437)
T ss_dssp TTSCCTTCEEEECS-SSCSEEEECCCCSCCC-----CSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HhhcCCCceeeEcc-cchhHHHhcCcccCch-----hheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhC
Confidence 11122222211111 1111111110000000 001122235677899999999999999887765 54443 2
Q ss_pred cccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-chhHHHHHHHHHHhhhhhccCceEEEeccccccccc
Q 012305 383 HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 383 ~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
+..|+++||||||||||||++|++||+++|.+|+.++++++.. +.+++...++.+|..|+... ++||||||||.++++
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~-P~IifiDEiDai~~~ 289 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHE-PCIIFMDEVDAIGGR 289 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSC-SEEEEEECCCSSSCC
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcC-Cceeeeecccccccc
Confidence 3467799999999999999999999999999999999998865 77788999999999999766 899999999999988
Q ss_pred cC
Q 012305 462 NQ 463 (466)
Q Consensus 462 r~ 463 (466)
|.
T Consensus 290 R~ 291 (437)
T 4b4t_L 290 RF 291 (437)
T ss_dssp CS
T ss_pred cc
Confidence 74
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.1e-19 Score=183.44 Aligned_cols=111 Identities=20% Similarity=0.366 Sum_probs=97.0
Q ss_pred ccccCCCCeeeCcchHHHHHHHHHh-hcccc----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-
Q 012305 352 EAIKNNGDIILHPSLQRRIQHLAKA-TANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (466)
Q Consensus 352 ~~~~~l~~vVg~~~~~~~l~~~~~~-~~~~~----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~- 425 (466)
.+..+|+||.|.++.++.|.+.+.. +.++. .+..|+++||||||||||||++|++||++++.+|+.++++++..
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 4667899999999999999987665 55543 23467799999999999999999999999999999999998865
Q ss_pred chhHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 426 ~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
+.+++...++.+|..|+... ++||||||||+++++|.
T Consensus 222 ~vGese~~vr~lF~~Ar~~a-P~IIFiDEiDai~~~R~ 258 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSTRV 258 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTC-SEEEEEESSSCCTTSCS
T ss_pred ccchHHHHHHHHHHHHHHhC-CceEeeecchhhccCCC
Confidence 77889999999999999876 89999999999998875
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.4e-18 Score=180.72 Aligned_cols=114 Identities=21% Similarity=0.320 Sum_probs=97.3
Q ss_pred ccccccCCCCeeeCcchHHHHHHHHH-hhcccc----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcc
Q 012305 350 PVEAIKNNGDIILHPSLQRRIQHLAK-ATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 424 (466)
Q Consensus 350 ~~~~~~~l~~vVg~~~~~~~l~~~~~-~~~~~~----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~ 424 (466)
...+..+|+||.|.+++++.|.+.+. .+.++. .+..|+++||||||||||||++|++||++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 34677789999999999999987544 354442 2345679999999999999999999999999999999999986
Q ss_pred c-chhHHHHHHHHHHhhhhhccCceEEEeccccccccccCC
Q 012305 425 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQD 464 (466)
Q Consensus 425 ~-~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~~ 464 (466)
. +.+++...++.+|..|+... ++||||||||.++++|.+
T Consensus 253 ~~~vGese~~ir~lF~~A~~~a-P~IifiDEiDal~~~R~~ 292 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFD 292 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHC-SEEEEEECTHHHHCCCSS
T ss_pred hcccchHHHHHHHHHHHHHhcC-CeEEeecchhhhhhccCC
Confidence 5 67788999999999999876 899999999999988753
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.1e-18 Score=178.03 Aligned_cols=112 Identities=22% Similarity=0.358 Sum_probs=97.4
Q ss_pred cccccCCCCeeeCcchHHHHHHHHHh-hcccc----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc
Q 012305 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (466)
Q Consensus 351 ~~~~~~l~~vVg~~~~~~~l~~~~~~-~~~~~----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~ 425 (466)
..+..+|+||.|.+++++.|.+.+.. +.++. .+..|+++||||||||||||++|++||++++.+|+.++++++..
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 45677999999999999999987765 44443 22356799999999999999999999999999999999999865
Q ss_pred -chhHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 426 -~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
+.+++...++.+|..|+... ++||||||||+++++|.
T Consensus 255 k~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~ 292 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENA-PSIVFIDEIDAIGTKRY 292 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTC-SEEEEEEEESSSSCCCS
T ss_pred ccCchHHHHHHHHHHHHHhcC-CcEEEEehhhhhcccCC
Confidence 77788999999999999876 89999999999998885
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.2e-18 Score=177.32 Aligned_cols=113 Identities=23% Similarity=0.428 Sum_probs=97.3
Q ss_pred cccccCCCCeeeCcchHHHHHHHHHh-hcccc----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc
Q 012305 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (466)
Q Consensus 351 ~~~~~~l~~vVg~~~~~~~l~~~~~~-~~~~~----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~ 425 (466)
..+..+|+||.|.+++++.|.+.+.. +.++. .+..|+++||||||||||||++|++||++++.+|+.++++++..
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 35677999999999999999886654 44432 23467899999999999999999999999999999999999865
Q ss_pred -chhHHHHHHHHHHhhhhhccCceEEEeccccccccccCC
Q 012305 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQD 464 (466)
Q Consensus 426 -~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~~ 464 (466)
+.+++...++.+|..|+... ++||||||||.++.+|.+
T Consensus 282 k~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~ 320 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKK-ACIIFFDEIDAVGGARFD 320 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTC-SEEEEEECCTTTSBCCSS
T ss_pred ccCCHHHHHHHHHHHHHHhcC-CceEeecccccccccccC
Confidence 77788999999999999776 899999999999988753
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=6e-18 Score=175.83 Aligned_cols=112 Identities=22% Similarity=0.396 Sum_probs=96.3
Q ss_pred cccccCCCCeeeCcchHHHHHHHHHh-hcccc----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc
Q 012305 351 VEAIKNNGDIILHPSLQRRIQHLAKA-TANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425 (466)
Q Consensus 351 ~~~~~~l~~vVg~~~~~~~l~~~~~~-~~~~~----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~ 425 (466)
..+..+|+||.|.+++++.|.+.+.. +.++. .+..|+++||||||||||||++|++||+.++.+|+.++++++..
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 45677899999999999999886654 44432 23467799999999999999999999999999999999998754
Q ss_pred -chhHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 426 -LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 426 -~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
+.+++...++.+|..|+... ++||||||+|.++++|.
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~a-P~IifiDEiD~i~~~R~ 282 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRF 282 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTC-SEEEEEECTHHHHCSCS
T ss_pred cccchhHHHHHHHHHHHHHcC-CCeeechhhhhhhcccc
Confidence 67788999999999999876 89999999999998874
No 7
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.64 E-value=4.2e-16 Score=175.61 Aligned_cols=255 Identities=18% Similarity=0.172 Sum_probs=160.4
Q ss_pred hhHHHHHhhcccHHHHhhcchhhhhhchhhhhhHHHHhhhhHH---HHHHHHHhhHHHHhHhhhhhhhhhhhhhhhhccc
Q 012305 154 EDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEE---QIQAQQRLTEKERAEIERETIRVKAMAEAEGRAH 230 (466)
Q Consensus 154 ~d~l~r~r~q~E~e~~~~~~e~~~~~qees~~r~E~~r~~~~e---~~~~~r~~~e~e~~~~~~~~~~~~~~~e~e~~~~ 230 (466)
=++++|+.++.+.+...+.++ .+..+..|++.+++++.. ++.+++.+|+.++..+......+..+.+......
T Consensus 403 l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (854)
T 1qvr_A 403 IDALERKKLQLEIEREALKKE----KDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIE 478 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHSSC----SSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 467888888888888888777 344566777777777766 8888999999999998888888887777666555
Q ss_pred ccccchhhhhhHHHHHhhchhHHHHHHHhhhhhhhhhhhhhhhccccceeeeechhhhhhhheeecccCceehhhhhhhh
Q 012305 231 EAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRI 310 (466)
Q Consensus 231 ~~~~~~d~~~~~~~~~~~~~r~~~l~~i~~~~~~l~~~~~~l~~d~~~~~~~v~~~~~~~~~V~~~k~g~~~~~~~v~~~ 310 (466)
....+.|+.. +.+.++..+..+......+... -.+.+.+...++ ...+...|.+|
T Consensus 479 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~---------------~~~l~~~v~~~ 533 (854)
T 1qvr_A 479 LAERQYDLNR------AAELRYGELPKLEAEVEALSEK----LRGARFVRLEVT---------------EEDIAEIVSRW 533 (854)
T ss_dssp HHTTTTCHHH------HHHHHTTHHHHHHHHHHHHHHH----SSSCSSCCSEEC---------------HHHHHHHHHTT
T ss_pred HHHhcccHHH------HHHHhhhhhHHHHHHHHHHHhh----hcccccccCCcC---------------HHHHHHHHHHH
Confidence 5566666654 2345555555554443322110 001111111222 33466778889
Q ss_pred hCCCcccc-ccccCCCchhhhhHHHHHHhhhccccccccCccccccCCCCeeeCcchHHHHHHHHHhhccc-cccccccc
Q 012305 311 LGQPSLIR-ESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANT-KIHQAPFR 388 (466)
Q Consensus 311 lg~p~lvr-e~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vVg~~~~~~~l~~~~~~~~~~-~~~~~p~~ 388 (466)
+|.|.... .....++ ..+.. .-+.+|||++..+..+...+...... ..+..|..
T Consensus 534 ~~ip~~~~~~~~~~~l---~~l~~---------------------~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~ 589 (854)
T 1qvr_A 534 TGIPVSKLLEGEREKL---LRLEE---------------------ELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIG 589 (854)
T ss_dssp SSCHHHHTTCCHHHHH---HSHHH---------------------HHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSE
T ss_pred hCCChHhhcHHHHHHH---HHHHH---------------------HHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCce
Confidence 98875311 1110000 00000 01245899999999998877665433 33345667
Q ss_pred cccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccchhHH-----------HHHHHHHHhhhhhccCceEEEecc
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQA-----------VTKIHEIFDWAKKSKKGLLLFIDE 454 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~~e~-----------~~~l~~lf~~A~~~~~~~iLflDE 454 (466)
+|||+||||||||++|++|+..+ +.+|+.++|+.+......+ ......+....+ ..+++||||||
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~-~~~~~vl~lDE 668 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVR-RRPYSVILFDE 668 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHH-HCSSEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHH-hCCCeEEEEec
Confidence 89999999999999999999999 7889999998765421000 001112223333 34589999999
Q ss_pred cccccccc
Q 012305 455 ADAFLCDN 462 (466)
Q Consensus 455 id~l~~~r 462 (466)
||.+.+..
T Consensus 669 i~~l~~~~ 676 (854)
T 1qvr_A 669 IEKAHPDV 676 (854)
T ss_dssp GGGSCHHH
T ss_pred ccccCHHH
Confidence 99987653
No 8
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.61 E-value=9.7e-16 Score=147.56 Aligned_cols=107 Identities=20% Similarity=0.374 Sum_probs=83.4
Q ss_pred cCCCCeeeCcchHHHHHHHHHhhcccccc----ccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-chhH
Q 012305 355 KNNGDIILHPSLQRRIQHLAKATANTKIH----QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGAQ 429 (466)
Q Consensus 355 ~~l~~vVg~~~~~~~l~~~~~~~~~~~~~----~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~~~e 429 (466)
..|++++|.+.++..|..++..+...... ..+++++|||||||||||++|++|++.++.+|+.++|+++.. +++.
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGL 82 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccCh
Confidence 46899999999999999988776554332 245578999999999999999999999999999999998754 5556
Q ss_pred HHHHHHHHHhhhhhccCceEEEecccccccccc
Q 012305 430 AVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 430 ~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
+...+..+|..+.... ++||||||||.+..++
T Consensus 83 ~~~~~~~~~~~a~~~~-~~vl~iDeid~l~~~~ 114 (262)
T 2qz4_A 83 GAARVRSLFKEARARA-PCIVYIDEIDAVGKKR 114 (262)
T ss_dssp HHHHHHHHHHHHHHTC-SEEEEEECC-------
T ss_pred hHHHHHHHHHHHHhcC-CeEEEEeCcchhhccc
Confidence 6778889999888654 7999999999997654
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.59 E-value=5.4e-16 Score=172.08 Aligned_cols=112 Identities=27% Similarity=0.467 Sum_probs=96.0
Q ss_pred ccccCCCCeeeCcchHHHHHHHHHh-hccccc----cccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-
Q 012305 352 EAIKNNGDIILHPSLQRRIQHLAKA-TANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (466)
Q Consensus 352 ~~~~~l~~vVg~~~~~~~l~~~~~~-~~~~~~----~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~- 425 (466)
.+..+|+||.|.++.++.|++++.. +.++.. +..|+++||||||||||||++|++||+.+|.+|+.++|+++..
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 3556899999999999999987764 554432 2367899999999999999999999999999999999988754
Q ss_pred chhHHHHHHHHHHhhhhhccCceEEEeccccccccccCC
Q 012305 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQD 464 (466)
Q Consensus 426 ~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~~ 464 (466)
+.+++...++.+|..|+... ++||||||||.|+++|++
T Consensus 278 ~~gese~~lr~lF~~A~~~~-PsIIfIDEiDal~~~r~~ 315 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREK 315 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSC-SEEEEEESGGGTCCTTTT
T ss_pred cchHHHHHHHHHHHHHHHcC-CeEEEEehhcccccccCC
Confidence 67788999999999999766 899999999999988764
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=152.96 Aligned_cols=111 Identities=20% Similarity=0.406 Sum_probs=89.5
Q ss_pred cccCCCCeeeCcchHHHHHHHHHh-hcccc---ccccccccccccCCCCCCchHHHHHHHHhh-CCcchhhcCCCccc-c
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKA-TANTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKS-GLDYAMMTGGDVAP-L 426 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~-~~~~~---~~~~p~~~vLl~GppGTGKT~lA~alA~~l-~~~~~~v~~~~l~~-~ 426 (466)
+...|++|+|.+.+++.|...+.. +..+. ....|+++||||||||||||++|++||+.+ +.+|+.++++++.. +
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 86 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhh
Confidence 345789999999999999886643 22221 123566899999999999999999999999 89999999988754 4
Q ss_pred hhHHHHHHHHHHhhhhhccCceEEEeccccccccccCC
Q 012305 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQD 464 (466)
Q Consensus 427 ~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~~ 464 (466)
.+++...++.+|..++... ++||||||||.+.++++.
T Consensus 87 ~g~~~~~~~~lf~~a~~~~-~~vl~iDEid~l~~~~~~ 123 (322)
T 1xwi_A 87 LGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSE 123 (322)
T ss_dssp CCSCHHHHHHHHHHHHHTS-SEEEEEETTTGGGCCSSS
T ss_pred hhHHHHHHHHHHHHHHhcC-CcEEEeecHHHhcccccc
Confidence 4566778899999988655 799999999999877653
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.59 E-value=6.2e-16 Score=154.96 Aligned_cols=111 Identities=21% Similarity=0.374 Sum_probs=89.1
Q ss_pred ccccCCCCeeeCcchHHHHHHHHHhh-ccc---cccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcc-cc
Q 012305 352 EAIKNNGDIILHPSLQRRIQHLAKAT-ANT---KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PL 426 (466)
Q Consensus 352 ~~~~~l~~vVg~~~~~~~l~~~~~~~-~~~---~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~-~~ 426 (466)
.+...|++|+|.+.+++.|...+... ... .....|+++||||||||||||++|++||+.++.+|+.++|+++. .+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 91 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcc
Confidence 34567899999999999998866432 111 22345678999999999999999999999999999999998764 35
Q ss_pred hhHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 427 ~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
.++....++.+|..+.... ++||||||||.|.+++.
T Consensus 92 ~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~ 127 (322)
T 3eie_A 92 MGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRG 127 (322)
T ss_dssp GGGHHHHHHHHHHHHHHTS-SEEEEEECGGGGSCC--
T ss_pred cchHHHHHHHHHHHHHhcC-CeEEEechhhhhhccCC
Confidence 5677788899999998765 79999999999987663
No 12
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.56 E-value=7.3e-16 Score=171.03 Aligned_cols=111 Identities=28% Similarity=0.463 Sum_probs=90.5
Q ss_pred ccccCCCCeeeCcchHHHHHHHHHhh-ccc----cccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-
Q 012305 352 EAIKNNGDIILHPSLQRRIQHLAKAT-ANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (466)
Q Consensus 352 ~~~~~l~~vVg~~~~~~~l~~~~~~~-~~~----~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~- 425 (466)
.+...|+++.|.+++++.|.+.+... .++ ..+..|+++||||||||||||++|++||.+++.+|+.++++++..
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 35567899999999999998866542 222 123456789999999999999999999999999999999988654
Q ss_pred chhHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 426 ~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
+.+++...++.+|+.|+... ++||||||||+++++|+
T Consensus 551 ~vGese~~vr~lF~~Ar~~~-P~IifiDEiDsl~~~R~ 587 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARG 587 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTC-SEEEECSCGGGCC----
T ss_pred ccchHHHHHHHHHHHHHHcC-CceeechhhhHHhhccC
Confidence 77788999999999999766 89999999999998875
No 13
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.55 E-value=4.6e-15 Score=143.29 Aligned_cols=110 Identities=24% Similarity=0.389 Sum_probs=88.5
Q ss_pred cccCCCCeeeCcchHHHHHHHHHhhccccc----cccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-ch
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 427 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~~ 427 (466)
+...|++|+|.+.+++.+..++..+.+... +..+++++|||||||||||+++++|++.++.+|+.++|.++.. +.
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~ 86 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 86 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhh
Confidence 355789999999999999988777655432 1234578999999999999999999999999999999998754 33
Q ss_pred hHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 428 ~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
+.....+..+|..+.... +++|||||||.+.++++
T Consensus 87 ~~~~~~~~~~~~~a~~~~-~~il~iDeid~l~~~~~ 121 (257)
T 1lv7_A 87 GVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRG 121 (257)
T ss_dssp CCCHHHHHHHHHHHHTTC-SEEEEETTHHHHTCCCS
T ss_pred hhhHHHHHHHHHHHHHcC-CeeehhhhhhhhccCCC
Confidence 344567888999887544 78999999999987665
No 14
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.54 E-value=5.5e-15 Score=155.77 Aligned_cols=110 Identities=23% Similarity=0.363 Sum_probs=90.8
Q ss_pred cccCCCCeeeCcchHHHHHHHHHhhcccc----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-ch
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 427 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~~~~~~----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~~ 427 (466)
+..+|++|+|.++.+..+..++..+.++. .+..+++++||+||||||||+++++|+..++.+|+.++|+++.. +.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~ 90 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFV 90 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHh
Confidence 45678999999999999999888766542 12345578999999999999999999999999999999988765 44
Q ss_pred hHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 428 ~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
+.+...++.+|..+.... ++||||||||.+.++|+
T Consensus 91 g~~~~~~r~lf~~A~~~~-p~ILfIDEid~l~~~r~ 125 (476)
T 2ce7_A 91 GVGAARVRDLFAQAKAHA-PCIVFIDEIDAVGRHRG 125 (476)
T ss_dssp THHHHHHHHHHHHHHHTC-SEEEEEETGGGTCCC--
T ss_pred cccHHHHHHHHHHHHhcC-CCEEEEechhhhhhhcc
Confidence 456677889999998655 79999999999988765
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.54 E-value=2.5e-15 Score=152.85 Aligned_cols=111 Identities=21% Similarity=0.377 Sum_probs=84.4
Q ss_pred ccccCCCCeeeCcchHHHHHHHHHhh-ccc---cccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-c
Q 012305 352 EAIKNNGDIILHPSLQRRIQHLAKAT-ANT---KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (466)
Q Consensus 352 ~~~~~l~~vVg~~~~~~~l~~~~~~~-~~~---~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~ 426 (466)
.+...|++|+|.+.+++.|...+... ..+ .....|+++||||||||||||++|++||+.++.+|+.++++++.. +
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~ 124 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 124 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhh
Confidence 34567899999999999998865432 221 123456689999999999999999999999999999999887643 4
Q ss_pred hhHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 427 ~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
.++....++.+|..+.... ++||||||||.|.+.+.
T Consensus 125 ~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~ 160 (355)
T 2qp9_X 125 MGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRG 160 (355)
T ss_dssp ---CHHHHHHHHHHHHHTS-SEEEEEECGGGGTC---
T ss_pred cchHHHHHHHHHHHHHHcC-CeEEEEechHhhcccCC
Confidence 4556678889999887655 79999999999987653
No 16
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.54 E-value=2.4e-15 Score=145.93 Aligned_cols=109 Identities=22% Similarity=0.352 Sum_probs=84.5
Q ss_pred cccCCCCeeeCcchHHHHHHHHHhhccccc----cccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-ch
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 427 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~~ 427 (466)
+...|+++||++..++.+..++..+..+.. ...+++++|||||||||||++|++|+..++.+|+.++|+++.. +.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~ 85 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFV 85 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCS
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhc
Confidence 456789999999999999998776554332 2234578999999999999999999999999999999988754 22
Q ss_pred hHHHHHHHHHHhhhhhccCceEEEecccccccccc
Q 012305 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 428 ~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
+.+...+..+|..+.... ++||||||+|.|..++
T Consensus 86 ~~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~ 119 (268)
T 2r62_A 86 GLGASRVRDLFETAKKQA-PSIIFIDEIDAIGKSR 119 (268)
T ss_dssp SSCSSSSSTTHHHHHHSC-SCEEEESCGGGTTC--
T ss_pred chHHHHHHHHHHHHHhcC-CeEEEEeChhhhcccc
Confidence 233345567788777544 7899999999997654
No 17
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.53 E-value=6.4e-15 Score=154.69 Aligned_cols=110 Identities=20% Similarity=0.262 Sum_probs=87.6
Q ss_pred ccccccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhC--CcchhhcCCCccc-c
Q 012305 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDVAP-L 426 (466)
Q Consensus 350 ~~~~~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~--~~~~~v~~~~l~~-~ 426 (466)
...+...|+++||++.+++.+..++..+... ..|++++|||||||||||++|+++|+.++ .+|+.++|+++.. +
T Consensus 29 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~---~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 29 SGLAKQAASGLVGQENAREACGVIVELIKSK---KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp TSCBCSEETTEESCHHHHHHHHHHHHHHHTT---CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSS
T ss_pred ccChhhchhhccCHHHHHHHHHHHHHHHHhC---CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHh
Confidence 3455667899999999999998877665442 34567899999999999999999999998 8999999988764 3
Q ss_pred hhHHHHHHHHHHhhh---hhccCceEEEeccccccccccCC
Q 012305 427 GAQAVTKIHEIFDWA---KKSKKGLLLFIDEADAFLCDNQD 464 (466)
Q Consensus 427 ~~e~~~~l~~lf~~A---~~~~~~~iLflDEid~l~~~r~~ 464 (466)
.+++.. +..+|..+ +... ++||||||||.++++|.+
T Consensus 106 ~~~~~~-~~~~f~~a~~~~~~~-~~il~iDEid~l~~~r~~ 144 (456)
T 2c9o_A 106 IKKTEV-LMENFRRAIGLRIKE-TKEVYEGEVTELTPCETE 144 (456)
T ss_dssp SCHHHH-HHHHHHHTEEEEEEE-EEEEEEEEEEEEEEC---
T ss_pred hhhhHH-HHHHHHHHHhhhhcC-CcEEEEechhhcccccCC
Confidence 444444 88999988 5444 799999999999987753
No 18
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.52 E-value=2.1e-15 Score=149.77 Aligned_cols=110 Identities=27% Similarity=0.464 Sum_probs=86.5
Q ss_pred cccCCCCeeeCcchHHHHHHHHHhh-cccc----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-c
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKAT-ANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~~-~~~~----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~ 426 (466)
+..+|++|+|.+.+++.|..++... ..+. ....+.+++|||||||||||++|++||..++.+|+.++|+++.. +
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 4567899999999999998876542 2211 12245678999999999999999999999999999999887643 3
Q ss_pred hhHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 427 ~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
.+++...++.+|..+.... ++||||||||.|...++
T Consensus 90 ~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~ 125 (301)
T 3cf0_A 90 FGESEANVREIFDKARQAA-PCVLFFDELDSIAKARG 125 (301)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SEEEEECSTTHHHHHHT
T ss_pred cCchHHHHHHHHHHHHhcC-CeEEEEEChHHHhhccC
Confidence 3445567889999987655 79999999999987653
No 19
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.52 E-value=9.9e-15 Score=149.95 Aligned_cols=110 Identities=24% Similarity=0.463 Sum_probs=82.1
Q ss_pred cccCCCCeeeCcchHHHHHHHHHhhcc-c---cccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-ch
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKATAN-T---KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 427 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~~~~-~---~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~~ 427 (466)
....|++|||++.+++.|..++..... . .....+.++||||||||||||++|++||..++.+|+.++|+++.. +.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYV 189 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-----
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcccc
Confidence 345689999999999999876543221 1 112345679999999999999999999999999999999998764 44
Q ss_pred hHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 428 ~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
+.....+..+|..+.... ++||||||||.|+.++.
T Consensus 190 g~~~~~~~~~~~~a~~~~-~~il~iDEid~l~~~~~ 224 (389)
T 3vfd_A 190 GEGEKLVRALFAVARELQ-PSIIFIDQVDSLLCERR 224 (389)
T ss_dssp --CHHHHHHHHHHHHHSS-SEEEEEETGGGGC----
T ss_pred chHHHHHHHHHHHHHhcC-CeEEEEECchhhcccCC
Confidence 455677889999988665 78999999999976653
No 20
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.51 E-value=1.4e-14 Score=142.61 Aligned_cols=110 Identities=23% Similarity=0.432 Sum_probs=85.7
Q ss_pred cccCCCCeeeCcchHHHHHHHHHhh-cccc---ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-ch
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKAT-ANTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 427 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~~-~~~~---~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~~ 427 (466)
+...|++++|++..++.|...+... .+.. ....+.+++|||||||||||++|++|+..++.+|+.++|+++.. +.
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 95 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYV 95 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSC
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhccc
Confidence 4567899999999999998765431 1111 11235678999999999999999999999999999999988754 34
Q ss_pred hHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 428 ~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
+.....++.+|..+.... ++||||||||.++..++
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~ 130 (297)
T 3b9p_A 96 GDGEKLVRALFAVARHMQ-PSIIFIDEVDSLLSERS 130 (297)
T ss_dssp SCHHHHHHHHHHHHHHTC-SEEEEEETGGGTSBCC-
T ss_pred chHHHHHHHHHHHHHHcC-CcEEEeccHHHhccccc
Confidence 455667788888887655 79999999999987654
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.51 E-value=9.3e-15 Score=153.05 Aligned_cols=110 Identities=20% Similarity=0.402 Sum_probs=83.0
Q ss_pred cccCCCCeeeCcchHHHHHHHHHh-hcccc---ccccccccccccCCCCCCchHHHHHHHHhh-CCcchhhcCCCccc-c
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKA-TANTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKS-GLDYAMMTGGDVAP-L 426 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~-~~~~~---~~~~p~~~vLl~GppGTGKT~lA~alA~~l-~~~~~~v~~~~l~~-~ 426 (466)
+...|++|+|++.++..|...+.. +..+. ....|+++||||||||||||++|++||..+ +.+|+.++++++.. +
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence 456789999999999999876532 22221 123466899999999999999999999999 89999999988754 4
Q ss_pred hhHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 427 ~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
.+++...++.+|..+.... ++||||||||.+++.+.
T Consensus 209 ~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~ 244 (444)
T 2zan_A 209 LGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRS 244 (444)
T ss_dssp ---CCCTHHHHHHHHHHSC-SEEEEESCTTTTCCCSS
T ss_pred cchHHHHHHHHHHHHHHcC-CeEEEEechHhhccCCC
Confidence 4455667889999887655 79999999999987654
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.51 E-value=1.1e-14 Score=142.29 Aligned_cols=111 Identities=24% Similarity=0.456 Sum_probs=87.9
Q ss_pred ccccCCCCeeeCcchHHHHHHHHHhh-cccc----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-
Q 012305 352 EAIKNNGDIILHPSLQRRIQHLAKAT-ANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (466)
Q Consensus 352 ~~~~~l~~vVg~~~~~~~l~~~~~~~-~~~~----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~- 425 (466)
.+...|++++|.+..++.|...+... .... ....+++++|||||||||||++|++|+..++.+|+.+++.++..
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 44567899999999999998765442 2211 11245578999999999999999999999999999999988753
Q ss_pred chhHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 426 ~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
+.+.....+..+|..+.... ++||||||||.+.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~ 127 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKA-PSIIFIDEIDAIAAKRT 127 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTC-SEEEEEETTHHHHBCCS
T ss_pred ccchHHHHHHHHHHHHHHcC-CeEEEEECHHHhcccCc
Confidence 55566777889999888655 78999999999987654
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.49 E-value=1.7e-14 Score=146.62 Aligned_cols=110 Identities=24% Similarity=0.391 Sum_probs=86.9
Q ss_pred cccCCCCeeeCcchHHHHHHHHHh-hcccc---ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-ch
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKA-TANTK---IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 427 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~-~~~~~---~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~~ 427 (466)
+...|++|+|.+.+++.|...+.. +.... ....++++||||||||||||++|++||..++.+|+.++|+++.. +.
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~ 158 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWV 158 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcccc
Confidence 456789999999999999886653 22221 12345678999999999999999999999999999999988754 44
Q ss_pred hHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 428 ~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
++....++.+|..+.... ++||||||||.|.++++
T Consensus 159 g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~ 193 (357)
T 3d8b_A 159 GEGEKMVRALFAVARCQQ-PAVIFIDEIDSLLSQRG 193 (357)
T ss_dssp THHHHHHHHHHHHHHHTC-SEEEEEETHHHHTBC--
T ss_pred chHHHHHHHHHHHHHhcC-CeEEEEeCchhhhccCC
Confidence 566677888998887655 79999999999977653
No 24
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.46 E-value=2.8e-14 Score=141.27 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=59.4
Q ss_pred ccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-chhHHHHHHHHHHhhhh---hccCceEEEeccccccc
Q 012305 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGAQAVTKIHEIFDWAK---KSKKGLLLFIDEADAFL 459 (466)
Q Consensus 384 ~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~~~e~~~~l~~lf~~A~---~~~~~~iLflDEid~l~ 459 (466)
..+++++|||||||||||++|++||+.+|.+|+.++|+++.. +.+.....++.+|..+. +...++||||||||.++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 345689999999999999999999999999999999987643 55667778888998882 13348999999999998
Q ss_pred cccC
Q 012305 460 CDNQ 463 (466)
Q Consensus 460 ~~r~ 463 (466)
++++
T Consensus 113 ~~~~ 116 (293)
T 3t15_A 113 GRMG 116 (293)
T ss_dssp ----
T ss_pred CCCC
Confidence 7543
No 25
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.45 E-value=3.2e-14 Score=150.65 Aligned_cols=109 Identities=28% Similarity=0.496 Sum_probs=89.1
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhh-cccc----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-ch
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKAT-ANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 427 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~-~~~~----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~~ 427 (466)
...|++++|.+..+..|..++... .+.. .+..++++||||||||||||++|++|+..++.+|+.++|+++.. +.
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 457889999999999998876543 2111 11245578999999999999999999999999999999988754 55
Q ss_pred hHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 428 ~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
++....++++|..+.... ++||||||||.|.++++
T Consensus 280 g~~~~~~~~~f~~A~~~~-p~iLfLDEId~l~~~~~ 314 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKRE 314 (489)
T ss_dssp THHHHHHHHHHHHHHHTC-SEEEEEESHHHHCBCTT
T ss_pred chhHHHHHHHHHHHHhcC-CcEEEecchhhhccccc
Confidence 677888999999998655 78999999999988765
No 26
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.43 E-value=1.2e-13 Score=146.43 Aligned_cols=110 Identities=22% Similarity=0.362 Sum_probs=90.1
Q ss_pred cccCCCCeeeCcchHHHHHHHHHhhccccc----cccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-ch
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 427 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~~ 427 (466)
+..+|++|+|.++.+..+..++..+.++.. +..+++++|||||||||||+++++||..++.+|+.++|.++.. +.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 567899999999999999998887655422 2234578999999999999999999999999999999988764 34
Q ss_pred hHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 428 ~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
+.....++.+|+.+.... ++||||||||.+...++
T Consensus 106 g~~~~~v~~lfq~a~~~~-p~il~IDEId~l~~~r~ 140 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRG 140 (499)
T ss_dssp THHHHHHHHHTTTSSSSS-SCEEEEECGGGTCCCSS
T ss_pred hhHHHHHHHHHHHHHhcC-CCEEEEehHHHHHHhhc
Confidence 455667889999887544 68999999999987654
No 27
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.41 E-value=5.8e-14 Score=124.35 Aligned_cols=88 Identities=16% Similarity=0.286 Sum_probs=68.7
Q ss_pred CeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccchhHHHHHHH
Q 012305 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVTKIH 435 (466)
Q Consensus 359 ~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~~e~~~~l~ 435 (466)
++||.+..+..+...+..+..... +|||+||||||||++|++|+..+ +.+|+ ++|+.+... ....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~------~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDI------AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-----PQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCS------CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----SCHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCC------CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----hhhh
Confidence 578999999888877766644333 49999999999999999999987 77899 999876543 3455
Q ss_pred HHHhhhhhccCceEEEecccccccccc
Q 012305 436 EIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 436 ~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
++|..+. +++|||||||.+....
T Consensus 70 ~~~~~a~----~g~l~ldei~~l~~~~ 92 (145)
T 3n70_A 70 DFIALAQ----GGTLVLSHPEHLTREQ 92 (145)
T ss_dssp HHHHHHT----TSCEEEECGGGSCHHH
T ss_pred cHHHHcC----CcEEEEcChHHCCHHH
Confidence 6777664 6899999999987654
No 28
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=132.56 Aligned_cols=109 Identities=24% Similarity=0.401 Sum_probs=79.5
Q ss_pred cccCCCCeeeCcchHHHHHHHH-Hhhcccc----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-c
Q 012305 353 AIKNNGDIILHPSLQRRIQHLA-KATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~-~~~~~~~----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~ 426 (466)
+..+|+||.|.+++++.|...+ ..+.+.. .+..++++++||||||||||+++++|+..++.+++.+++.++.. +
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 3457899999999999998643 3333321 12344578999999999999999999999999999999988754 4
Q ss_pred hhHHHHHHHHHHhhhhhccCceEEEecccccccccc
Q 012305 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 427 ~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
.++....+..+|..+.... ++++|+||+|.+...+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~-p~i~~~Deid~~~~~r 119 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSA-PCVIFFDEVDALCPRR 119 (274)
T ss_dssp THHHHHHHHHHHHHHHHTC-SEEEEEETCTTTCC--
T ss_pred hhHHHHHHHHHHHHHHhcC-CCeEeeehhhhhhccc
Confidence 4566678899999886544 7899999999987654
No 29
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.35 E-value=2.7e-13 Score=137.73 Aligned_cols=104 Identities=17% Similarity=0.316 Sum_probs=76.0
Q ss_pred eeeCcchHHHHHHHHHhh-cccc------ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc---chhH
Q 012305 360 IILHPSLQRRIQHLAKAT-ANTK------IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGAQ 429 (466)
Q Consensus 360 vVg~~~~~~~l~~~~~~~-~~~~------~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~---~~~e 429 (466)
|||++.+++.|...+... .... ....+..+|||+||||||||++|++||..++.+|+.++|+++.. .|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 789999999988765321 1111 11135578999999999999999999999999999999988764 2222
Q ss_pred HHHHHHHHHhhhh---hccCceEEEeccccccccccC
Q 012305 430 AVTKIHEIFDWAK---KSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 430 ~~~~l~~lf~~A~---~~~~~~iLflDEid~l~~~r~ 463 (466)
....+..+|..+. ....++||||||||.+.+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~ 133 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSD 133 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSS
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccc
Confidence 3456677776652 112378999999999987753
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.34 E-value=3.6e-13 Score=132.95 Aligned_cols=100 Identities=30% Similarity=0.365 Sum_probs=75.3
Q ss_pred CeeeCcchHHHHHHHHHhhcccc-------ccccccccccccCCCCCCchHHHHHHHHhhC-------CcchhhcCCCcc
Q 012305 359 DIILHPSLQRRIQHLAKATANTK-------IHQAPFRNMLFYGPPGTGKTMVAREIARKSG-------LDYAMMTGGDVA 424 (466)
Q Consensus 359 ~vVg~~~~~~~l~~~~~~~~~~~-------~~~~p~~~vLl~GppGTGKT~lA~alA~~l~-------~~~~~v~~~~l~ 424 (466)
+|||++.+++.|..++....... ....+..++|||||||||||++|+++++.++ .+|+.+++.++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 69999999999988776543211 1134456899999999999999999999883 378888887764
Q ss_pred c-chhHHHHHHHHHHhhhhhccCceEEEecccccccccc
Q 012305 425 P-LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 425 ~-~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
. +.+.....+..+|..+. ++||||||||.|++.+
T Consensus 112 ~~~~g~~~~~~~~~~~~~~----~~vl~iDEid~l~~~~ 146 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAM----GGVLFIDEAYYLYRPD 146 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHT----TSEEEEETGGGSCCCC
T ss_pred hhcccccHHHHHHHHHhcC----CCEEEEEChhhhccCC
Confidence 3 33445566778887763 6899999999987544
No 31
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.34 E-value=7.9e-14 Score=123.26 Aligned_cols=87 Identities=14% Similarity=0.174 Sum_probs=67.0
Q ss_pred CeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcccchhHHHHHHHHHH
Q 012305 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIF 438 (466)
Q Consensus 359 ~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~~~~e~~~~l~~lf 438 (466)
++||.+..+..+...+..+.... .+|||+||||||||++|++|+..++ +|+.++|+++... ...++|
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~------~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~------~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRT------SPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID------MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCS------SCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH------CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCC------CcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH------hhhhHH
Confidence 58899999998888776654332 3599999999999999999999988 9999999875421 146677
Q ss_pred hhhhhccCceEEEecccccccccc
Q 012305 439 DWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 439 ~~A~~~~~~~iLflDEid~l~~~r 462 (466)
+.+. +++|||||||.+..+.
T Consensus 72 ~~a~----~~~l~lDei~~l~~~~ 91 (143)
T 3co5_A 72 QKAE----GGVLYVGDIAQYSRNI 91 (143)
T ss_dssp HHTT----TSEEEEEECTTCCHHH
T ss_pred HhCC----CCeEEEeChHHCCHHH
Confidence 7664 6899999999987643
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.34 E-value=1.4e-12 Score=126.94 Aligned_cols=102 Identities=26% Similarity=0.362 Sum_probs=74.0
Q ss_pred CCCeeeCcchHHHHHH----HHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcc--cchhHH
Q 012305 357 NGDIILHPSLQRRIQH----LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA--PLGAQA 430 (466)
Q Consensus 357 l~~vVg~~~~~~~l~~----~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~--~~~~e~ 430 (466)
..++||.+...+.+.. +...+... ...++.++|||||||||||++|++|+..++.+|+.+++++.. ......
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~--~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNS--DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHC--SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhcc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 3568888877666655 33333322 123557899999999999999999999999999999886521 122333
Q ss_pred HHHHHHHHhhhhhccCceEEEeccccccccc
Q 012305 431 VTKIHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 431 ~~~l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
...+..+|+.+.... ++||||||||.|++.
T Consensus 110 ~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~ 139 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQ-LSCVVVDDIERLLDY 139 (272)
T ss_dssp HHHHHHHHHHHHTSS-EEEEEECCHHHHTTC
T ss_pred HHHHHHHHHHHHhcC-CcEEEEEChhhhhcc
Confidence 456778888776544 899999999998543
No 33
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.33 E-value=5.4e-13 Score=128.45 Aligned_cols=110 Identities=22% Similarity=0.380 Sum_probs=82.9
Q ss_pred ccccCCCCeeeCcchHHHHHHHHHhhcccc----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-c
Q 012305 352 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (466)
Q Consensus 352 ~~~~~l~~vVg~~~~~~~l~~~~~~~~~~~----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~ 426 (466)
.+..+|++++|.+..+..+..+...+.+.. .+..++++++|+||||||||+++++|+..++.+++.+++.++.. .
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 345688999999999999998877654321 11233467999999999999999999999998888888776543 2
Q ss_pred hhHHHHHHHHHHhhhhhccCceEEEecccccccccc
Q 012305 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 427 ~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
.+.....+..+|+.+.... ++++||||||.+...+
T Consensus 90 ~~~~~~~i~~~~~~~~~~~-~~i~~~Deid~l~~~~ 124 (254)
T 1ixz_A 90 VGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKR 124 (254)
T ss_dssp TTHHHHHHHHHHHHHTTSS-SEEEEEETHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHhcC-CeEEEehhhhhhhccc
Confidence 3344566788888876444 6899999999987654
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.31 E-value=9e-13 Score=129.55 Aligned_cols=105 Identities=23% Similarity=0.378 Sum_probs=75.0
Q ss_pred CCeeeCcchHHHHHHHHHhh-cccc-----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc---chh
Q 012305 358 GDIILHPSLQRRIQHLAKAT-ANTK-----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGA 428 (466)
Q Consensus 358 ~~vVg~~~~~~~l~~~~~~~-~~~~-----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~---~~~ 428 (466)
.+|+|++.+++.+...+... .... ....++.++|||||||||||++|++++..++.+|+.++|+++.. .+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 45899999999988765431 1110 11234568999999999999999999999999999999987753 333
Q ss_pred HHHHHHHHHHhhh----hhccCceEEEecccccccccc
Q 012305 429 QAVTKIHEIFDWA----KKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 429 e~~~~l~~lf~~A----~~~~~~~iLflDEid~l~~~r 462 (466)
+....+..++..+ ....+++||||||||.+..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~ 132 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG 132 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCS
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccc
Confidence 3334566666533 111237899999999998765
No 35
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.30 E-value=1e-12 Score=147.14 Aligned_cols=111 Identities=28% Similarity=0.463 Sum_probs=89.5
Q ss_pred ccccCCCCeeeCcchHHHHHHHHHhhc-cc----cccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-
Q 012305 352 EAIKNNGDIILHPSLQRRIQHLAKATA-NT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP- 425 (466)
Q Consensus 352 ~~~~~l~~vVg~~~~~~~l~~~~~~~~-~~----~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~- 425 (466)
.+...|++++|.+.+++.|..++.... .. .....+..++|||||||||||++|++||..++.+|+.++++++..
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 345678999999999999887654321 11 112245678999999999999999999999999999999998754
Q ss_pred chhHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 426 ~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
+.+++...+..+|..++... ++||||||||.|+..|+
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~-p~vl~iDEid~l~~~r~ 587 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARG 587 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHC-SBCCCCSSHHHHCCTTT
T ss_pred hcCccHHHHHHHHHHHHhcC-CeEEEEEChhhhhhhcc
Confidence 55667788999999998766 78999999999987764
No 36
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.29 E-value=2.5e-12 Score=116.12 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=71.2
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh----------CCcchhhcCCCc
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 423 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l----------~~~~~~v~~~~l 423 (466)
+..|++++|.+.....+...+.. ....++||+||||||||++++.++..+ +.+++.+++..+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 89 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred hccccccccchHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH
Confidence 34678999998877777654322 123579999999999999999999986 556666665543
Q ss_pred c---cchhHHHHHHHHHHhhhhhccCceEEEeccccccccc
Q 012305 424 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 424 ~---~~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
. ...+.....+..++..+.....+.||||||+|.+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~ 130 (195)
T 1jbk_A 90 VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGA 130 (195)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-
T ss_pred hccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhcc
Confidence 2 2333445566777776655555789999999999754
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.27 E-value=2.1e-12 Score=135.22 Aligned_cols=99 Identities=29% Similarity=0.467 Sum_probs=68.9
Q ss_pred ccCCCCeeeCcchH---HHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcccchhHH
Q 012305 354 IKNNGDIILHPSLQ---RRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQA 430 (466)
Q Consensus 354 ~~~l~~vVg~~~~~---~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~~~~e~ 430 (466)
+.+|+++||++.++ ..|...+.. ... .+||||||||||||++|++|++.++.+|+.+++....
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~---~~~-----~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~------ 87 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA---GHL-----HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG------ 87 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH---TCC-----CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC------
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc---CCC-----cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC------
Confidence 45789999999998 555544332 211 4799999999999999999999999999998876532
Q ss_pred HHHHHHHHhhhhh---ccCceEEEeccccccccccCCCC
Q 012305 431 VTKIHEIFDWAKK---SKKGLLLFIDEADAFLCDNQDFI 466 (466)
Q Consensus 431 ~~~l~~lf~~A~~---~~~~~iLflDEid~l~~~r~~~l 466 (466)
...++.++..+.. ...++||||||||.|....++.|
T Consensus 88 ~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~L 126 (447)
T 3pvs_A 88 VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAF 126 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CC
T ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHH
Confidence 2344555555442 23479999999999987766543
No 38
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.27 E-value=1.3e-12 Score=130.85 Aligned_cols=96 Identities=22% Similarity=0.311 Sum_probs=74.3
Q ss_pred cCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcccchhHHHHHH
Q 012305 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKI 434 (466)
Q Consensus 355 ~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~~~~e~~~~l 434 (466)
..|+++||++..+..+..++..... ...++.+|||+||||||||++|+++++.++.+|+.++|+.+.. ...+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~---~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~-----~~~~ 97 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK---RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK-----SGDL 97 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH---TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS-----HHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh---cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc-----hhHH
Confidence 3789999999999999887665432 2334567999999999999999999999999999999977642 2233
Q ss_pred HHHHhhhhhccCceEEEeccccccccc
Q 012305 435 HEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 435 ~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
..++.. ...+++|||||||.+...
T Consensus 98 ~~~~~~---~~~~~vl~lDEi~~l~~~ 121 (338)
T 3pfi_A 98 AAILTN---LSEGDILFIDEIHRLSPA 121 (338)
T ss_dssp HHHHHT---CCTTCEEEEETGGGCCHH
T ss_pred HHHHHh---ccCCCEEEEechhhcCHH
Confidence 444443 234799999999998654
No 39
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.27 E-value=1.9e-12 Score=126.65 Aligned_cols=109 Identities=22% Similarity=0.383 Sum_probs=83.0
Q ss_pred cccCCCCeeeCcchHHHHHHHHHhhcccc----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-ch
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LG 427 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~~~~~~----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~~ 427 (466)
+..+|++++|.++.+..+..+...+.... .+...+++++|+||||||||+++++|+..++.+++.+++.++.. ..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 56788999999999999998877654421 11233467999999999999999999999998888888776543 22
Q ss_pred hHHHHHHHHHHhhhhhccCceEEEecccccccccc
Q 012305 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 428 ~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
......+..+|+.+.... ++++||||||.+...+
T Consensus 115 ~~~~~~i~~~~~~~~~~~-~~i~~iDeid~l~~~~ 148 (278)
T 1iy2_A 115 GVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKR 148 (278)
T ss_dssp THHHHHHHHHHHHHHTSC-SEEEEEETHHHHHCC-
T ss_pred hHHHHHHHHHHHHHHhcC-CcEEehhhhHhhhccc
Confidence 334456778888876444 6899999999987544
No 40
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.26 E-value=2.6e-12 Score=127.44 Aligned_cols=98 Identities=26% Similarity=0.470 Sum_probs=74.2
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcccchhHHHHH
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 433 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~~~~e~~~~ 433 (466)
+..|+++||.+..+..+...+...... ..+..++||+||||||||++|+++++.++.+|+.++|+.+.. ...
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~---~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-----~~~ 79 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKAR---KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-----PGD 79 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHH---CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-----HHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHcc---CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-----hHH
Confidence 447899999999999988876654332 123457999999999999999999999999999999987643 223
Q ss_pred HHHHHhhhhhccCceEEEeccccccccc
Q 012305 434 IHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 434 l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
+.+.|... ...+++|||||||.+...
T Consensus 80 l~~~l~~~--~~~~~~l~lDEi~~l~~~ 105 (324)
T 1hqc_A 80 LAAILANS--LEEGDILFIDEIHRLSRQ 105 (324)
T ss_dssp HHHHHTTT--CCTTCEEEETTTTSCCHH
T ss_pred HHHHHHHh--ccCCCEEEEECCcccccc
Confidence 34444431 234789999999998654
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.26 E-value=3.8e-12 Score=114.87 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=69.1
Q ss_pred cCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh----------CCcchhhcCCCcc
Q 012305 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVA 424 (466)
Q Consensus 355 ~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l----------~~~~~~v~~~~l~ 424 (466)
..|++++|.+.....+...+.. ....++||+||||||||++++.++..+ +.+++.+++..+.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR--------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLI 90 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHH
T ss_pred cccchhhcchHHHHHHHHHHhC--------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhh
Confidence 3678899998877776654321 123579999999999999999999987 4555555544331
Q ss_pred ---cchhHHHHHHHHHHhhhhhccCceEEEeccccccccc
Q 012305 425 ---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 425 ---~~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
...+.....+..++..+.....+.+|||||+|.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~ 130 (187)
T 2p65_A 91 AGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGA 130 (187)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSS
T ss_pred cCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccc
Confidence 1223334456677777665555789999999999743
No 42
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.25 E-value=3.8e-12 Score=142.44 Aligned_cols=110 Identities=26% Similarity=0.480 Sum_probs=89.5
Q ss_pred cccCCCCeeeCcchHHHHHHHHHh-hccccc----cccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-c
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKA-TANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-L 426 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~-~~~~~~----~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~-~ 426 (466)
+..+|++|+|.+..++.|..++.. +.++.. ...+..+||||||||||||+++++|+..++.+|+.++|.++.. +
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 456889999999999999887764 333221 2345578999999999999999999999999999999987654 4
Q ss_pred hhHHHHHHHHHHhhhhhccCceEEEeccccccccccC
Q 012305 427 GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDNQ 463 (466)
Q Consensus 427 ~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r~ 463 (466)
.++....+..+|..+.... +++|||||||.++.+++
T Consensus 279 ~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~ 314 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKRE 314 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHC-SEEEEEESGGGTSCTTS
T ss_pred hhhHHHHHHHHHHHHHhcC-CcEEEeccHHHhhhccc
Confidence 5566778899999988655 79999999999987654
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.23 E-value=4.3e-12 Score=126.40 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=69.4
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcccchhHHH-H
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAV-T 432 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~~~~e~~-~ 432 (466)
+.+|+++||++.....+...+.. +.++..+||+||||||||++++++++.++.+|+.+++++.. .+.. .
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~-------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---~~~i~~ 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK-------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---IDFVRG 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT-------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC---HHHHHT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC---HHHHHH
Confidence 45789999999998888776552 23334578899999999999999999999999999987753 1111 1
Q ss_pred HHHHHHhhhhhccCceEEEeccccccc
Q 012305 433 KIHEIFDWAKKSKKGLLLFIDEADAFL 459 (466)
Q Consensus 433 ~l~~lf~~A~~~~~~~iLflDEid~l~ 459 (466)
.+..+.......+.+.||||||+|.|.
T Consensus 92 ~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 92 PLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp HHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred HHHHHHhhcccCCCCeEEEEECCcccC
Confidence 122222221112257999999999997
No 44
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.23 E-value=7.9e-12 Score=139.03 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=74.0
Q ss_pred CCeeeCcchHHHHHHHHHhhcccc-ccccccccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccchhHHHHH
Q 012305 358 GDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVTK 433 (466)
Q Consensus 358 ~~vVg~~~~~~~l~~~~~~~~~~~-~~~~p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~~e~~~~ 433 (466)
.++||++..+..+...+....... .+..|..++||+||||||||++|++||..+ +.+|+.++|+++......+.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~- 569 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGG- 569 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccc-
Confidence 468999999999988776655433 334555689999999999999999999998 678999999887653222222
Q ss_pred HHHHHhhhhhccCceEEEecccccccccc
Q 012305 434 IHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 434 l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
.++...+ ..+++||||||||.+.+.-
T Consensus 570 --~l~~~~~-~~~~~vl~lDEi~~~~~~~ 595 (758)
T 3pxi_A 570 --QLTEKVR-RKPYSVVLLDAIEKAHPDV 595 (758)
T ss_dssp ---CHHHHH-HCSSSEEEEECGGGSCHHH
T ss_pred --hhhHHHH-hCCCeEEEEeCccccCHHH
Confidence 2223333 3458999999999987653
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.22 E-value=4e-12 Score=128.49 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=54.8
Q ss_pred ccccccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCC--cchhhcCCC
Q 012305 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGD 422 (466)
Q Consensus 350 ~~~~~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~--~~~~v~~~~ 422 (466)
...+...|+++||++..+..+..+...+.... .|++++|||||||||||++|++++..++. +|+.++|..
T Consensus 36 ~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~---~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 36 ALEPRQASQGMVGQLAARRAAGVVLEMIREGK---IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp TSCBCSEETTEESCHHHHHHHHHHHHHHHTTC---CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred ccCcCcchhhccChHHHHHHHHHHHHHHHcCC---CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 34555669999999999999887776665533 33468999999999999999999999964 666666544
No 46
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.21 E-value=5.1e-12 Score=128.87 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=68.5
Q ss_pred CeeeCcchHHHHHHHHH----hhccc------------------cccccccccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 359 DIILHPSLQRRIQHLAK----ATANT------------------KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 359 ~vVg~~~~~~~l~~~~~----~~~~~------------------~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
.|||++.+++.|...+. ..... .....+..++||+||||||||++|++||+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 48999999999887652 11100 001123468999999999999999999999999999
Q ss_pred hhcCCCccc---chhHHHHHHHHHHhhhhh---ccCceEEEeccccccccc
Q 012305 417 MMTGGDVAP---LGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 417 ~v~~~~l~~---~~~e~~~~l~~lf~~A~~---~~~~~iLflDEid~l~~~ 461 (466)
.++|..+.. .+......+..++..... ...++||||||||.+..+
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL 152 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhh
Confidence 999988753 222223345555543321 123789999999999876
No 47
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.20 E-value=2.5e-12 Score=124.53 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=63.7
Q ss_pred cCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhC---CcchhhcCCCcccchhHH-
Q 012305 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAPLGAQA- 430 (466)
Q Consensus 355 ~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~---~~~~~v~~~~l~~~~~e~- 430 (466)
.+|+++||++..+..+...+..+.... .+|||+||||||||++|++|+..++ .+|+.++|+.+.....+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~------~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~ 76 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLD------KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSC------SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCC------CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHH
Confidence 368899999999888877666554332 3599999999999999999999884 689999998874311110
Q ss_pred -HHH-----------HHHHHhhhhhccCceEEEecccccccccc
Q 012305 431 -VTK-----------IHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 431 -~~~-----------l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
.+. ..+++..+ .+++||||||+.+....
T Consensus 77 l~g~~~~~~~g~~~~~~~~l~~a----~~~~l~lDEi~~l~~~~ 116 (265)
T 2bjv_A 77 LFGHEAGAFTGAQKRHPGRFERA----DGGTLFLDELATAPMMV 116 (265)
T ss_dssp HHCCC---------CCCCHHHHT----TTSEEEEESGGGSCHHH
T ss_pred hcCCcccccccccccccchhhhc----CCcEEEEechHhcCHHH
Confidence 000 01122222 26899999999987543
No 48
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.19 E-value=6e-13 Score=136.89 Aligned_cols=190 Identities=14% Similarity=0.144 Sum_probs=121.8
Q ss_pred ccchhhhhhHHHHHhhchhHHHHHHHhhhhhhhhhhhhhhhccccceeeeechhhhhhhheeecccCceehhhhhhhhhC
Q 012305 233 KLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILG 312 (466)
Q Consensus 233 ~~~~d~~~~~~~~~~~~~r~~~l~~i~~~~~~l~~~~~~l~~d~~~~~~~v~~~~~~~~~V~~~k~g~~~~~~~v~~~lg 312 (466)
....|+.+.++.++. .+...++..|+.. +++.++++++++......+.+++.| +.+|+.|++.
T Consensus 42 ~~~~DlvllD~~mp~-~dG~ell~~lr~~-------------~~~~pvIvlT~~~~~~~~~~a~~~G---a~dyl~KP~~ 104 (387)
T 1ny5_A 42 EKHFNVVLLDLLLPD-VNGLEILKWIKER-------------SPETEVIVITGHGTIKTAVEAMKMG---AYDFLTKPCM 104 (387)
T ss_dssp HSCCSEEEEESBCSS-SBHHHHHHHHHHH-------------CTTSEEEEEEETTCHHHHHHHHTTT---CCEEEEESCC
T ss_pred hCCCCEEEEeCCCCC-CCHHHHHHHHHhh-------------CCCCcEEEEeCCCCHHHHHHHHhcC---ceEEecCCCC
Confidence 445788877766653 3555566555543 5678888999998888888888888 5678877765
Q ss_pred CCccccccccCCCchhhhhHHHHHHhhhccccccccCccccccCCCCeeeCcchHHHHHHHHHhhccccccccccccccc
Q 012305 313 QPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLF 392 (466)
Q Consensus 313 ~p~lvre~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl 392 (466)
...+.. .+...+.......+........ ...+..++|.+..+..+...+..+..+..+ |||
T Consensus 105 ~~~L~~-----------~i~~~l~~~~l~~~~~~l~~~~--~~~~~~~ig~s~~m~~l~~~i~~~a~~~~~------vli 165 (387)
T 1ny5_A 105 LEEIEL-----------TINKAIEHRKLRKENELLRREK--DLKEEEYVFESPKMKEILEKIKKISCAECP------VLI 165 (387)
T ss_dssp HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH--HTTCCCCCCCSHHHHHHHHHHHHHTTCCSC------EEE
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHhhhhh--hhcchhhhhccHHhhHHHHHHHHhcCCCCC------eEE
Confidence 444422 1111111100000000000000 012467889988888888877777655443 999
Q ss_pred cCCCCCCchHHHHHHHHhhC---CcchhhcCCCcccchhH--HHH-----------HHHHHHhhhhhccCceEEEecccc
Q 012305 393 YGPPGTGKTMVAREIARKSG---LDYAMMTGGDVAPLGAQ--AVT-----------KIHEIFDWAKKSKKGLLLFIDEAD 456 (466)
Q Consensus 393 ~GppGTGKT~lA~alA~~l~---~~~~~v~~~~l~~~~~e--~~~-----------~l~~lf~~A~~~~~~~iLflDEid 456 (466)
+|++|||||++|++++..++ .+|+.++|+.++....+ ..+ ...++|+.|. +++||||||+
T Consensus 166 ~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~----~gtlfldei~ 241 (387)
T 1ny5_A 166 TGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELAD----GGTLFLDEIG 241 (387)
T ss_dssp ECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTT----TSEEEEESGG
T ss_pred ecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCC----CcEEEEcChh
Confidence 99999999999999998874 78999999987652211 111 1234455544 7899999999
Q ss_pred cccccc
Q 012305 457 AFLCDN 462 (466)
Q Consensus 457 ~l~~~r 462 (466)
.|....
T Consensus 242 ~l~~~~ 247 (387)
T 1ny5_A 242 ELSLEA 247 (387)
T ss_dssp GCCHHH
T ss_pred hCCHHH
Confidence 987543
No 49
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=1e-11 Score=132.36 Aligned_cols=109 Identities=23% Similarity=0.341 Sum_probs=75.9
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhcccc---------ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcc
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTK---------IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 424 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~---------~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~ 424 (466)
+..|++++|++..++.|..++....... .+..+++++||+||||||||++|++|++.+|.+++.++|+++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 3468999999999999988766533221 1112457899999999999999999999999999999998864
Q ss_pred cch--hHHHH------HHHHHHhhh----hhccCceEEEecccccccccc
Q 012305 425 PLG--AQAVT------KIHEIFDWA----KKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 425 ~~~--~e~~~------~l~~lf~~A----~~~~~~~iLflDEid~l~~~r 462 (466)
... ..... .+.++|..+ .....++||||||||.|....
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~ 164 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD 164 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh
Confidence 311 00000 122333333 112447899999999997654
No 50
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.18 E-value=3.8e-12 Score=126.66 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=68.7
Q ss_pred CCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccchhHH--H-
Q 012305 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQA--V- 431 (466)
Q Consensus 358 ~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~~e~--~- 431 (466)
+++||.+..+..+...+..+.... .+|||+||||||||++|++|+..+ +.+|+.++|+.++....++ .
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~------~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg 75 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSD------ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFG 75 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTT------SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTC
T ss_pred CCcEECCHHHHHHHHHHHHHhCCC------CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcC
Confidence 358999999998888777765433 359999999999999999999976 6789999999875421111 0
Q ss_pred ----------HHHHHHHhhhhhccCceEEEeccccccccc
Q 012305 432 ----------TKIHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 432 ----------~~l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
....+.|..+. +++|||||||.|...
T Consensus 76 ~~~g~~tg~~~~~~g~~~~a~----~g~L~LDEi~~l~~~ 111 (304)
T 1ojl_A 76 HEKGAFTGADKRREGRFVEAD----GGTLFLDEIGDISPL 111 (304)
T ss_dssp CCSSCCC---CCCCCHHHHHT----TSEEEEESCTTCCHH
T ss_pred ccccccCchhhhhcCHHHhcC----CCEEEEeccccCCHH
Confidence 01223444443 689999999998754
No 51
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.18 E-value=1.5e-12 Score=133.16 Aligned_cols=184 Identities=17% Similarity=0.237 Sum_probs=122.8
Q ss_pred cccchhhhhhHHHHHhhchhHHHHHHHhhhhhhhhhhhhhhhccccceeeeechhhhhhhheeecccCceehhhhhhhhh
Q 012305 232 AKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRIL 311 (466)
Q Consensus 232 ~~~~~d~~~~~~~~~~~~~r~~~l~~i~~~~~~l~~~~~~l~~d~~~~~~~v~~~~~~~~~V~~~k~g~~~~~~~v~~~l 311 (466)
.....|+.+.++.++. .+...++..|+.. +++.++++++++......+.+.+.| +.+|+.|++
T Consensus 41 ~~~~~DlvllDi~mP~-~dG~ell~~lr~~-------------~~~~pvI~lT~~~~~~~~~~a~~~G---a~~yl~KP~ 103 (368)
T 3dzd_A 41 KELFFPVIVLDVWMPD-GDGVNFIDFIKEN-------------SPDSVVIVITGHGSVDTAVKAIKKG---AYEFLEKPF 103 (368)
T ss_dssp HHBCCSEEEEESEETT-EETTTHHHHHHHH-------------CTTCEEEEEECSSCCHHHHHHHHHT---CCEEEESSC
T ss_pred HhCCCCEEEEeCCCCC-CCHHHHHHHHHhh-------------CCCCeEEEEeCCCCHHHHHHHHhcC---cceEEeCCC
Confidence 3456788888877764 3566666666654 5677888999988887778888887 567777776
Q ss_pred CCCccccccccCCCchhhhhHHHHHHhhhccccccccCccccccCCCCeeeCcchHHHHHHHHHhhcccccccccccccc
Q 012305 312 GQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNML 391 (466)
Q Consensus 312 g~p~lvre~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vL 391 (466)
....+. ..+...+... ...... . ...+++|.+..+..+...+..+.....+ +|
T Consensus 104 ~~~~L~-----------~~i~~~l~~~----~~~~~~---~---~~~~~ig~s~~~~~~~~~~~~~a~~~~~------vl 156 (368)
T 3dzd_A 104 SVERFL-----------LTIKHAFEEY----SKKAPP---Q---EEIEFVGEHPKILEIKRLIPKIAKSKAP------VL 156 (368)
T ss_dssp CHHHHH-----------HHHHHHHHHH----SCCCCC---C---CCCCCCCCSHHHHHHHHHHHHHHTSCSC------EE
T ss_pred CHHHHH-----------HHHHHHHHHh----hhhhcc---c---ccccccccchHHHHHHhhhhhhhccchh------he
Confidence 644331 2222332222 100000 0 1246889999888888877777655444 99
Q ss_pred ccCCCCCCchHHHHHHHHhhCC--cchhhcCCCcccchhHH--HHH-----------HHHHHhhhhhccCceEEEecccc
Q 012305 392 FYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAPLGAQA--VTK-----------IHEIFDWAKKSKKGLLLFIDEAD 456 (466)
Q Consensus 392 l~GppGTGKT~lA~alA~~l~~--~~~~v~~~~l~~~~~e~--~~~-----------l~~lf~~A~~~~~~~iLflDEid 456 (466)
|+|++||||+++|+.++..++. .|+.++|+.++....++ .+. ..+.|+.+. +++||||||+
T Consensus 157 i~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~----~gtlfldei~ 232 (368)
T 3dzd_A 157 ITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELAD----QGTLFLDEVG 232 (368)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTT----TSEEEEETGG
T ss_pred EEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcC----CCeEEecChh
Confidence 9999999999999999998853 39999999886532221 111 123455443 6899999999
Q ss_pred ccccccC
Q 012305 457 AFLCDNQ 463 (466)
Q Consensus 457 ~l~~~r~ 463 (466)
.|....+
T Consensus 233 ~l~~~~Q 239 (368)
T 3dzd_A 233 ELDQRVQ 239 (368)
T ss_dssp GSCHHHH
T ss_pred hCCHHHH
Confidence 9976543
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.13 E-value=3.9e-11 Score=133.31 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=73.8
Q ss_pred CCeeeCcchHHHHHHHHHhhccc-cccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc-----------
Q 012305 358 GDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------- 425 (466)
Q Consensus 358 ~~vVg~~~~~~~l~~~~~~~~~~-~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~----------- 425 (466)
.+|+|++..+..|...+...... ..+..|..++||+||||||||++|++|+..++.+|+.++|+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~ 537 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCC
Confidence 56899999999988766554432 233456678999999999999999999999999999998876532
Q ss_pred ---chhHHHHHHHHHHhhhhhccCceEEEecccccccccc
Q 012305 426 ---LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 426 ---~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
.|.+..+.+.+.+ +. .+++||||||||.+.++-
T Consensus 538 ~g~~g~~~~~~l~~~~---~~-~~~~vl~lDEi~~~~~~~ 573 (758)
T 1r6b_X 538 PGYVGFDQGGLLTDAV---IK-HPHAVLLLDEIEKAHPDV 573 (758)
T ss_dssp SCSHHHHHTTHHHHHH---HH-CSSEEEEEETGGGSCHHH
T ss_pred CCCcCccccchHHHHH---Hh-CCCcEEEEeCccccCHHH
Confidence 2222223333333 33 348999999999987653
No 53
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.12 E-value=1.9e-11 Score=120.55 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=69.1
Q ss_pred CCeeeCcchHHHHHHHHHhhccc-cccccccccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccchhHH---
Q 012305 358 GDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQA--- 430 (466)
Q Consensus 358 ~~vVg~~~~~~~l~~~~~~~~~~-~~~~~p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~~e~--- 430 (466)
.+++|++..++.+...+...... ..+..|..++||+||||||||++|++|+..+ +.+|+.++|+.+.......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 96 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhc
Confidence 45889999999988766654332 2333455689999999999999999999998 5568888887654311000
Q ss_pred --------HHHHHHHHhhhhhccCceEEEeccccccccc
Q 012305 431 --------VTKIHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 431 --------~~~l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
......+..... ..+++||||||||.+...
T Consensus 97 g~~~~~~~~~~~~~~~~~~~-~~~~~vl~lDEi~~l~~~ 134 (311)
T 4fcw_A 97 GAPPGYVGYEEGGQLTEAVR-RRPYSVILFDAIEKAHPD 134 (311)
T ss_dssp CCCTTSTTTTTCCHHHHHHH-HCSSEEEEEETGGGSCHH
T ss_pred CCCCccccccccchHHHHHH-hCCCeEEEEeChhhcCHH
Confidence 000011222222 344799999999998754
No 54
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.05 E-value=1e-10 Score=116.55 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=64.2
Q ss_pred cccccCCCCee-eCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccc
Q 012305 351 VEAIKNNGDII-LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPL 426 (466)
Q Consensus 351 ~~~~~~l~~vV-g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~ 426 (466)
.++..+|+++| |+.. ...+..+....... +..+.++|||||||||||++++++++.+ +.+++.+++.++...
T Consensus 4 l~~~~~f~~fv~g~~~-~~a~~~~~~~~~~~---~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~ 79 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGN-RLAYEVVKEALENL---GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA 79 (324)
T ss_dssp CCTTCCSSSCCCCTTT-HHHHHHHHHHHHTT---TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCCCCCcccCCCCCcH-HHHHHHHHHHHhCc---CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence 45667899998 5433 22333333322222 1234579999999999999999999998 888888888765321
Q ss_pred hhHHH--HHHHHHHhhhhhccCceEEEecccccccc
Q 012305 427 GAQAV--TKIHEIFDWAKKSKKGLLLFIDEADAFLC 460 (466)
Q Consensus 427 ~~e~~--~~l~~lf~~A~~~~~~~iLflDEid~l~~ 460 (466)
..... .....+.... ..+++||||||+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 80 MVEHLKKGTINEFRNMY---KSVDLLLLDDVQFLSG 112 (324)
T ss_dssp HHHHHHHTCHHHHHHHH---HTCSEEEEECGGGGTT
T ss_pred HHHHHHcCcHHHHHHHh---cCCCEEEEcCcccccC
Confidence 11111 1111222221 2268999999999875
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.05 E-value=1.5e-10 Score=130.45 Aligned_cols=100 Identities=19% Similarity=0.291 Sum_probs=69.5
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh----------CCcchhhcCCCc
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 423 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l----------~~~~~~v~~~~l 423 (466)
+..|+++||.+.....+..++.. ....|+||+||||||||++++.|+..+ +.+++.++++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~--------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 237 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL 237 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC--------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---
T ss_pred cCCCcccCCcHHHHHHHHHHHhc--------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh
Confidence 45789999999887777665422 123479999999999999999999987 778888888776
Q ss_pred c---cchhHHHHHHHHHHhhhhhccCceEEEeccccccccc
Q 012305 424 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 424 ~---~~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
. .+.++....+..+|..+.....+.||||||+|.|.+.
T Consensus 238 ~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~ 278 (854)
T 1qvr_A 238 LAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGA 278 (854)
T ss_dssp --------CHHHHHHHHHHHHHTTCSSEEEEECCC------
T ss_pred hccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhcc
Confidence 3 2444556678889988876555789999999999743
No 56
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.04 E-value=1.5e-10 Score=116.64 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=72.6
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh---------CCcchhhcCCCcc
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---------GLDYAMMTGGDVA 424 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l---------~~~~~~v~~~~l~ 424 (466)
.+.+++++|.+.....+...+..... .....+++|+||||||||++++.+++.+ +.+|+.++|....
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~----~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALR----GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTS----SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHc----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC
Confidence 34457899999888888765443211 1233579999999999999999999988 7788889987643
Q ss_pred cc------------------hhHHHHHHHHHHhhhhhccCceEEEeccccccccc
Q 012305 425 PL------------------GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 425 ~~------------------~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
.. +......+..++......+.+.||||||+|.+...
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHS
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhccc
Confidence 21 10012224455555554455789999999998754
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.00 E-value=3.3e-10 Score=106.50 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=61.9
Q ss_pred cccccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccch
Q 012305 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG 427 (466)
Q Consensus 351 ~~~~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~ 427 (466)
..+..+|+++++.+.....+..+....... +..++||+||||||||++++.++..+ +.+++.+++.++....
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (242)
T 3bos_A 21 LPDDETFTSYYPAAGNDELIGALKSAASGD-----GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS 95 (242)
T ss_dssp CCTTCSTTTSCC--CCHHHHHHHHHHHHTC-----SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC
T ss_pred CCCCCChhhccCCCCCHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 344568899998543344444443333221 23579999999999999999999887 3667777776654322
Q ss_pred hHHHHHHHHHHhhhhhccCceEEEeccccccccc
Q 012305 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 428 ~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
. ..+.. ...+++|||||++.+..+
T Consensus 96 ~-------~~~~~---~~~~~vliiDe~~~~~~~ 119 (242)
T 3bos_A 96 T-------ALLEG---LEQFDLICIDDVDAVAGH 119 (242)
T ss_dssp G-------GGGTT---GGGSSEEEEETGGGGTTC
T ss_pred H-------HHHHh---ccCCCEEEEeccccccCC
Confidence 1 12222 233689999999998654
No 58
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.00 E-value=2.1e-10 Score=123.02 Aligned_cols=101 Identities=24% Similarity=0.257 Sum_probs=67.6
Q ss_pred CCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc----------ch
Q 012305 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP----------LG 427 (466)
Q Consensus 358 ~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~----------~~ 427 (466)
.+++|...+...+...+........ .+..++||+||||||||+++++|+..++.++..++|+.+.. +.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~--~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~i 158 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKS--LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYV 158 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSS--CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhccc--CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHh
Confidence 4588999999888664432211111 14457999999999999999999999999999998877532 11
Q ss_pred hHHHHHHHHHHhhhhhccCceEEEecccccccccc
Q 012305 428 AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 428 ~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
+.....+...|..+... ++||||||||.+..++
T Consensus 159 g~~~~~~~~~~~~a~~~--~~vl~lDEid~l~~~~ 191 (543)
T 3m6a_A 159 GAMPGRIIQGMKKAGKL--NPVFLLDEIDKMSSDF 191 (543)
T ss_dssp -----CHHHHHHTTCSS--SEEEEEEESSSCC---
T ss_pred ccCchHHHHHHHHhhcc--CCEEEEhhhhhhhhhh
Confidence 22234455667766533 4599999999998774
No 59
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.97 E-value=4.9e-10 Score=103.33 Aligned_cols=99 Identities=27% Similarity=0.402 Sum_probs=63.2
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh-----CCcchhhcCCCcccchh
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPLGA 428 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l-----~~~~~~v~~~~l~~~~~ 428 (466)
+..|++++|++.....+...+... ...++||+||||||||++++.++..+ +..++.++++......
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK--------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID- 83 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHH-
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChH-
Confidence 346788999999888887765321 12359999999999999999999876 3345666665432211
Q ss_pred HHHHHHHHHHhhhh-hccCceEEEeccccccccc
Q 012305 429 QAVTKIHEIFDWAK-KSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 429 e~~~~l~~lf~~A~-~~~~~~iLflDEid~l~~~ 461 (466)
.....+..+..... ....+.+|||||+|.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 117 (226)
T 2chg_A 84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD 117 (226)
T ss_dssp HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH
T ss_pred HHHHHHHHHhcccCCCccCceEEEEeChhhcCHH
Confidence 11111222222110 0134789999999998653
No 60
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.97 E-value=1.9e-10 Score=115.11 Aligned_cols=74 Identities=14% Similarity=0.235 Sum_probs=54.5
Q ss_pred ccccccccCCCCCCchHHHHHHHHhh----------CCcchhhcCCCcccc-----------------hhHHHHHHHHHH
Q 012305 386 PFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDVAPL-----------------GAQAVTKIHEIF 438 (466)
Q Consensus 386 p~~~vLl~GppGTGKT~lA~alA~~l----------~~~~~~v~~~~l~~~-----------------~~e~~~~l~~lf 438 (466)
++.++|||||||||||++++.+++.+ +..|+.+||..+... .+.+...+..+|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 44689999999999999999999998 346788998765321 112344567777
Q ss_pred hhh-hhccCceEEEeccccccc
Q 012305 439 DWA-KKSKKGLLLFIDEADAFL 459 (466)
Q Consensus 439 ~~A-~~~~~~~iLflDEid~l~ 459 (466)
... .......||||||||.|.
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSC
T ss_pred HHhhhccCCceEEEEecHHHhh
Confidence 764 223447899999999987
No 61
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=2.4e-10 Score=114.36 Aligned_cols=99 Identities=23% Similarity=0.312 Sum_probs=63.8
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhC------CcchhhcCCCcccch
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG------LDYAMMTGGDVAPLG 427 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~------~~~~~v~~~~l~~~~ 427 (466)
+..|++++|++..+..+...+.. + .+.++|||||||||||++++++++.++ ..++.+++++...
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~------~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-- 102 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS------A--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG-- 102 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC------T--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC--
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc------C--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc--
Confidence 45689999999999888765321 1 123599999999999999999999864 2456667665422
Q ss_pred hHHHHHHHHHHhhh------------hhccCceEEEecccccccccc
Q 012305 428 AQAVTKIHEIFDWA------------KKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 428 ~e~~~~l~~lf~~A------------~~~~~~~iLflDEid~l~~~r 462 (466)
..........|... ...+.+.||||||+|.+..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~ 149 (353)
T 1sxj_D 103 ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA 149 (353)
T ss_dssp HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHH
T ss_pred hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHH
Confidence 11111111111110 112346799999999987643
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.94 E-value=5.9e-10 Score=117.28 Aligned_cols=89 Identities=19% Similarity=0.324 Sum_probs=63.7
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh----------CCcchhhcCCCc
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 423 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l----------~~~~~~v~~~~l 423 (466)
+..|++|||++..+..+..++.. ....|+||+||||||||++|++||..+ +.+|+.++++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r--------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred cCCCCCccCcHHHHHHHHHHHhc--------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--
Confidence 34688999999998888776533 122479999999999999999999997 6677788776
Q ss_pred ccchhHHHHHHHHHHhhhhhccCceEEEec
Q 012305 424 APLGAQAVTKIHEIFDWAKKSKKGLLLFID 453 (466)
Q Consensus 424 ~~~~~e~~~~l~~lf~~A~~~~~~~iLflD 453 (466)
..+.++....+..+|+.+...+ ++|||||
T Consensus 246 ~~~~g~~e~~~~~~~~~~~~~~-~~iLfiD 274 (468)
T 3pxg_A 246 TKYRGEFEDRLKKVMDEIRQAG-NIILFID 274 (468)
T ss_dssp -------CTTHHHHHHHHHTCC-CCEEEEC
T ss_pred ccccchHHHHHHHHHHHHHhcC-CeEEEEe
Confidence 3334444567788888887654 7899999
No 63
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.93 E-value=2.1e-10 Score=112.87 Aligned_cols=99 Identities=28% Similarity=0.412 Sum_probs=64.0
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh-----CCcchhhcCCCcccchh
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPLGA 428 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l-----~~~~~~v~~~~l~~~~~ 428 (466)
+..|++++|++..+..+...+.. +.. .++|||||||||||++++.+++.+ +.+|+.+++++... .
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~------~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~ 82 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER------KNI--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--I 82 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT------TCC--CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--T
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC------CCC--CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--h
Confidence 34678999999988877654321 122 259999999999999999999986 33466777765422 1
Q ss_pred HHH-HHHHHHHhhhhh-ccCceEEEecccccccccc
Q 012305 429 QAV-TKIHEIFDWAKK-SKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 429 e~~-~~l~~lf~~A~~-~~~~~iLflDEid~l~~~r 462 (466)
+.. ..+..+...... ..++.||||||+|.+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~ 118 (319)
T 2chq_A 83 DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA 118 (319)
T ss_dssp TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHH
T ss_pred HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHH
Confidence 111 112222211111 1347899999999987543
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.93 E-value=1.6e-09 Score=109.57 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=68.5
Q ss_pred cccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh----CCcchhhcCCCcccc--
Q 012305 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAPL-- 426 (466)
Q Consensus 353 ~~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l----~~~~~~v~~~~l~~~-- 426 (466)
+.+.+++++|.+.....+...+........+ .+++++|+||||||||++++.+++.+ +..++.++|......
T Consensus 12 ~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~--~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 89 (389)
T 1fnn_A 12 PSYVPKRLPHREQQLQQLDILLGNWLRNPGH--HYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA 89 (389)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHHSTTS--SCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcCCCC--CCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHH
Confidence 3444578999999888888766554322111 11379999999999999999999998 567888887664320
Q ss_pred ----------------hhHHHHHHHHHHhhhhhccCceEEEecccccc
Q 012305 427 ----------------GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAF 458 (466)
Q Consensus 427 ----------------~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l 458 (466)
+......+..+.......+.+.||||||++.+
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 00111122233333333344789999999997
No 65
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.92 E-value=3.2e-10 Score=104.94 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=59.2
Q ss_pred ccCCCCeeeCcch-HHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccchhH
Q 012305 354 IKNNGDIILHPSL-QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQ 429 (466)
Q Consensus 354 ~~~l~~vVg~~~~-~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~~e 429 (466)
..+|+++++.+.. ...+..+...+...... .++.+++|+||||||||+++++|+..+ +.+++.++++++......
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPG-KKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKH 99 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSS-CCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHH
Confidence 4578999886633 33344343343332211 122679999999999999999999988 566666666543211000
Q ss_pred H--HHHHHHHHhhhhhccCceEEEeccccccc
Q 012305 430 A--VTKIHEIFDWAKKSKKGLLLFIDEADAFL 459 (466)
Q Consensus 430 ~--~~~l~~lf~~A~~~~~~~iLflDEid~l~ 459 (466)
. ...+..++..... ..+|||||++...
T Consensus 100 ~~~~~~~~~~~~~~~~---~~~lilDei~~~~ 128 (202)
T 2w58_A 100 SLQDQTMNEKLDYIKK---VPVLMLDDLGAEA 128 (202)
T ss_dssp C---CCCHHHHHHHHH---SSEEEEEEECCC-
T ss_pred HhccchHHHHHHHhcC---CCEEEEcCCCCCc
Confidence 0 0011222333322 4699999997754
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.92 E-value=3.2e-10 Score=114.77 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=68.7
Q ss_pred CCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh-----------CCcchhhcCCCcc-
Q 012305 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----------GLDYAMMTGGDVA- 424 (466)
Q Consensus 357 l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l-----------~~~~~~v~~~~l~- 424 (466)
+++++|.+...+.+...+...... ..+++++|+||||||||++++.+++.+ +.+++.++|....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~----~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN----EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT----CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCC
Confidence 478999999998888766554332 233589999999999999999999987 7888888876433
Q ss_pred c-------------------chhHHHHHHHHHHhhhhhccCceEEEeccccccccc
Q 012305 425 P-------------------LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 425 ~-------------------~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
. .+......+..++..+...+ .||||||+|.+...
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~--~vlilDEi~~l~~~ 148 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR--AIIYLDEVDTLVKR 148 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC--EEEEEETTHHHHHS
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC--CEEEEECHHHhccC
Confidence 1 00001122444555444322 39999999998754
No 67
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.92 E-value=4.3e-10 Score=113.06 Aligned_cols=96 Identities=24% Similarity=0.365 Sum_probs=66.3
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcccchhHHHHH
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK 433 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~~~~e~~~~ 433 (466)
+..|++++|+..+...+...+... ...+.++.+++||||||||||+++++|++.++.++...+|..+.. + ..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~---~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-~----~~ 92 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAA---KMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-Q----GD 92 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHH---HHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-H----HH
T ss_pred CccHHHccCcHHHHHHHHHHHHHH---HhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-H----HH
Confidence 346788999988777776554332 122345568999999999999999999999988876666654321 1 22
Q ss_pred HHHHHhhhhhccCceEEEecccccccc
Q 012305 434 IHEIFDWAKKSKKGLLLFIDEADAFLC 460 (466)
Q Consensus 434 l~~lf~~A~~~~~~~iLflDEid~l~~ 460 (466)
+..++.. ...++|+||||++.+.+
T Consensus 93 l~~~~~~---~~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 93 MAAILTS---LERGDVLFIDEIHRLNK 116 (334)
T ss_dssp HHHHHHH---CCTTCEEEEETGGGCCH
T ss_pred HHHHHHH---ccCCCEEEEcchhhcCH
Confidence 3333332 22368999999999865
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.91 E-value=1.2e-09 Score=121.24 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=71.6
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh----------CCcchhhcCCCc
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 423 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l----------~~~~~~v~~~~l 423 (466)
...|+++||.+.....+..++.. ....++||+||||||||++++.|+..+ +..++.++++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~--------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l 253 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR--------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL 253 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--
T ss_pred cCCCCCccCCHHHHHHHHHHHhc--------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH
Confidence 34688999999888887665432 123479999999999999999999887 334444554443
Q ss_pred c---cchhHHHHHHHHHHhhhhhccCceEEEecccccccccc
Q 012305 424 A---PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 424 ~---~~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
. .+.++....+..+|+.+...+ ++||||||++.|.+.+
T Consensus 254 ~~~~~~~g~~e~~l~~~~~~~~~~~-~~iL~IDEi~~l~~~~ 294 (758)
T 1r6b_X 254 LAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAG 294 (758)
T ss_dssp -CCCCCSSCHHHHHHHHHHHHSSSS-CEEEEETTTTTTTTSC
T ss_pred hccccccchHHHHHHHHHHHHHhcC-CeEEEEechHHHhhcC
Confidence 2 133455667888888887654 7999999999986543
No 69
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=5.8e-10 Score=110.08 Aligned_cols=98 Identities=28% Similarity=0.417 Sum_probs=62.8
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCC-----cchhhcCCCcccchh
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-----DYAMMTGGDVAPLGA 428 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~-----~~~~v~~~~l~~~~~ 428 (466)
+..|++++|++..+..+..++.. +. +.++|||||||||||++++.+++.+.. +++.+++++... .
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~ 90 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT------GS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG--I 90 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH--H
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc--h
Confidence 45689999999999888766543 11 125999999999999999999998732 355566654311 1
Q ss_pred HHH-HHHHHHHhhhhh-ccCceEEEeccccccccc
Q 012305 429 QAV-TKIHEIFDWAKK-SKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 429 e~~-~~l~~lf~~A~~-~~~~~iLflDEid~l~~~ 461 (466)
+.. ..+..+...... ...+.+|||||+|.+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 125 (327)
T 1iqp_A 91 NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD 125 (327)
T ss_dssp HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH
T ss_pred HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH
Confidence 111 111221111101 134789999999998654
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.88 E-value=5.5e-10 Score=112.39 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=70.9
Q ss_pred ccccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh------CCcchhhcCCCccc
Q 012305 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS------GLDYAMMTGGDVAP 425 (466)
Q Consensus 352 ~~~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l------~~~~~~v~~~~l~~ 425 (466)
.+...+++++|.+...+.+...+..... .....+++|+||||||||++++.+++.+ +.+++.++|.....
T Consensus 14 ~~~~~p~~~~gr~~e~~~l~~~l~~~~~----~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 14 LPDYIPDELPHREDQIRKIASILAPLYR----EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp SSSCCCSCCTTCHHHHHHHHHSSGGGGG----TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCccCCCCCCChHHHHHHHHHHHHHHHc----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 3444567899999888887765433211 1233579999999999999999999988 77777777643211
Q ss_pred ------------------chhHHHHHHHHHHhhhhhccCceEEEeccccccccc
Q 012305 426 ------------------LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 426 ------------------~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
.+......+..++......+.+.||||||++.+...
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKK 143 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhcc
Confidence 011112224455555554444789999999998754
No 71
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.87 E-value=1.2e-10 Score=116.26 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=61.0
Q ss_pred CCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCC-ccc---chhHHHH
Q 012305 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAP---LGAQAVT 432 (466)
Q Consensus 357 l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~-l~~---~~~e~~~ 432 (466)
+++++|++.++..+...+.. ..++|||||||||||++|+++++.++.+|+.++|.. ..+ .+.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~----------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~ 95 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT----------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYN 95 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH----------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEE
T ss_pred ccceeCcHHHHHHHHHHHHc----------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeec
Confidence 57799999988777654322 136999999999999999999999999998888742 111 0000000
Q ss_pred HHHHHHhhhhhccCceEEEecccccccccc
Q 012305 433 KIHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 433 ~l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
...+.|.+....-.++|||||||+.+.++.
T Consensus 96 ~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~ 125 (331)
T 2r44_A 96 QHKGNFEVKKGPVFSNFILADEVNRSPAKV 125 (331)
T ss_dssp TTTTEEEEEECTTCSSEEEEETGGGSCHHH
T ss_pred CCCCceEeccCcccccEEEEEccccCCHHH
Confidence 000111111000012799999999987543
No 72
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.86 E-value=2.3e-09 Score=99.78 Aligned_cols=99 Identities=18% Similarity=0.248 Sum_probs=62.9
Q ss_pred cCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhh--cCC-----------
Q 012305 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMM--TGG----------- 421 (466)
Q Consensus 355 ~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v--~~~----------- 421 (466)
..|++++|++.....+...+.. +..+..+||+||||||||++++.+++.++..+..+ .|.
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 92 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTT
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhcc
Confidence 4567899999988888776543 12224699999999999999999998885432111 110
Q ss_pred ---Cccc---chhHHHHHHHHHHhhhhh---ccCceEEEecccccccc
Q 012305 422 ---DVAP---LGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLC 460 (466)
Q Consensus 422 ---~l~~---~~~e~~~~l~~lf~~A~~---~~~~~iLflDEid~l~~ 460 (466)
++.. ........+..++..+.. ...+.+|||||+|.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~ 140 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 140 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH
Confidence 1111 011223345566655432 23468999999998754
No 73
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.86 E-value=6.1e-10 Score=116.03 Aligned_cols=98 Identities=22% Similarity=0.318 Sum_probs=72.0
Q ss_pred CCeeeCcchHHHHHHHHHh-hcccc-----ccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCccc---chh
Q 012305 358 GDIILHPSLQRRIQHLAKA-TANTK-----IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP---LGA 428 (466)
Q Consensus 358 ~~vVg~~~~~~~l~~~~~~-~~~~~-----~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~---~~~ 428 (466)
.+|||++.+++.|...+.. +.... ....+++|+||+||||||||++|++||..++.+|+.++++.+.. .|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4589999999999765532 11111 11235689999999999999999999999999999999877643 333
Q ss_pred HHHHHHHHHHhhhhhccCceEEEecccccccc
Q 012305 429 QAVTKIHEIFDWAKKSKKGLLLFIDEADAFLC 460 (466)
Q Consensus 429 e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~ 460 (466)
+....++.+|..+.. ++++||++.+..
T Consensus 95 d~e~~lr~lf~~a~~-----~~~~De~d~~~~ 121 (444)
T 1g41_A 95 EVDSIIRDLTDSAMK-----LVRQQEIAKNRA 121 (444)
T ss_dssp CTHHHHHHHHHHHHH-----HHHHHHHHSCC-
T ss_pred cHHHHHHHHHHHHHh-----cchhhhhhhhhc
Confidence 467788899988753 456888877643
No 74
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=1.3e-09 Score=107.30 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=64.5
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh-----CCcchhhcCCCcccchh
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAPLGA 428 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l-----~~~~~~v~~~~l~~~~~ 428 (466)
+..|++++|++.....+...+.. +.. .++|||||||||||++++.+++.+ +.+++.+++++...
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~------~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--- 85 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD------GNM--PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG--- 85 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS------CCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS---
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc------CCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC---
Confidence 34678899999998888776432 112 249999999999999999999986 23456666655321
Q ss_pred HHHHHHHHHHhhhh----h--ccCceEEEecccccccccc
Q 012305 429 QAVTKIHEIFDWAK----K--SKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 429 e~~~~l~~lf~~A~----~--~~~~~iLflDEid~l~~~r 462 (466)
...++.++.... . .+++.||||||+|.+....
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~ 123 (323)
T 1sxj_B 86 --IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA 123 (323)
T ss_dssp --HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHH
T ss_pred --hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHH
Confidence 223333333222 1 2236899999999986543
No 75
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.85 E-value=8.2e-10 Score=100.47 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=57.6
Q ss_pred ccCCCCeeeC-cchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh----CCcchhhcCCCcccchh
Q 012305 354 IKNNGDIILH-PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAPLGA 428 (466)
Q Consensus 354 ~~~l~~vVg~-~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l----~~~~~~v~~~~l~~~~~ 428 (466)
..+|+++++. +.....+..+...+.+.... +..+++|+||||||||++++++++.+ |..++.+++.++.....
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPE--EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK 83 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGG--GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 3478888874 34444444444444433222 23579999999999999999999877 55555555443321110
Q ss_pred HHHH--HHHHHHhhhhhccCceEEEecccccc
Q 012305 429 QAVT--KIHEIFDWAKKSKKGLLLFIDEADAF 458 (466)
Q Consensus 429 e~~~--~l~~lf~~A~~~~~~~iLflDEid~l 458 (466)
.... ....++... ..+.+|||||++..
T Consensus 84 ~~~~~~~~~~~~~~~---~~~~llilDE~~~~ 112 (180)
T 3ec2_A 84 HLMDEGKDTKFLKTV---LNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHTCCSHHHHHH---HTCSEEEEETCSSS
T ss_pred HHhcCchHHHHHHHh---cCCCEEEEeCCCCC
Confidence 0000 000122222 23689999999853
No 76
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.85 E-value=1.3e-09 Score=109.80 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=64.1
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcch--hhcCC----------
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA--MMTGG---------- 421 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~--~v~~~---------- 421 (466)
+..|+++||++.....+...+.. +..+..+||+||||||||++++.+++.++.... ...|+
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~-------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHH-------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHT
T ss_pred CCchhhccCcHHHHHHHHHHHHh-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhc
Confidence 34688999999999888776532 122235899999999999999999998854211 11111
Q ss_pred ----Ccccchh---HHHHHHHHHHhhhhh---ccCceEEEeccccccccc
Q 012305 422 ----DVAPLGA---QAVTKIHEIFDWAKK---SKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 422 ----~l~~~~~---e~~~~l~~lf~~A~~---~~~~~iLflDEid~l~~~ 461 (466)
++..... .....++.+++.+.. .+.+.||||||+|.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~ 134 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH 134 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHH
Confidence 1111000 112345556655542 234689999999998643
No 77
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.84 E-value=1.3e-09 Score=113.69 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=63.4
Q ss_pred ccccccCCCCee-eCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh-----CCcchhhcCCCc
Q 012305 350 PVEAIKNNGDII-LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDV 423 (466)
Q Consensus 350 ~~~~~~~l~~vV-g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l-----~~~~~~v~~~~l 423 (466)
..++.++|+++| |++... .+..+.....+. +. +.+++||||||||||+++++|++.+ +.+++.+++.++
T Consensus 97 ~l~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~---~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSF-AYHAALEVAKHP---GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHH-HHHHHHHHHHST---TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCCCCCChhhcCCCCchHH-HHHHHHHHHhCC---CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 456677899988 544433 333333222221 11 4579999999999999999999988 777777777654
Q ss_pred ccchhHHH-HHHHHHHhhhhhcc-CceEEEecccccccc
Q 012305 424 APLGAQAV-TKIHEIFDWAKKSK-KGLLLFIDEADAFLC 460 (466)
Q Consensus 424 ~~~~~e~~-~~l~~lf~~A~~~~-~~~iLflDEid~l~~ 460 (466)
........ ......|.. ... .++|||||||+.+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 172 LNDLVDSMKEGKLNEFRE--KYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp HHHHHHHHHTTCHHHHHH--HHTTTCSEEEEECGGGGSS
T ss_pred HHHHHHHHHcccHHHHHH--HhcCCCCEEEEeCcccccC
Confidence 22110000 000011111 122 478999999999876
No 78
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.84 E-value=6.6e-10 Score=111.09 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=39.3
Q ss_pred ccccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhC
Q 012305 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 352 ~~~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
.+..+|++++|++.++..+... .+.. ...++|||||||||||++|++++..++
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~--~~~~------~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLT--AVDP------GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHH--HHCG------GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCchhccChHHHHHHHHHH--hhCC------CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3456789999999876654322 1111 123699999999999999999999886
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.77 E-value=4.7e-09 Score=116.63 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=63.5
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh----------CCcchhhcCCCc
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS----------GLDYAMMTGGDV 423 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l----------~~~~~~v~~~~l 423 (466)
...|+++||++..+..+..++.. ....|+|||||||||||++|++||..+ +.+++.+++ .
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~--------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--g 245 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--G 245 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred hCCCCCccCchHHHHHHHHHHhC--------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--c
Confidence 34688999999999888776432 122479999999999999999999997 566666666 1
Q ss_pred ccchhHHHHHHHHHHhhhhhccCceEEEec
Q 012305 424 APLGAQAVTKIHEIFDWAKKSKKGLLLFID 453 (466)
Q Consensus 424 ~~~~~e~~~~l~~lf~~A~~~~~~~iLflD 453 (466)
..+.++....+..+|..+.... ++|||||
T Consensus 246 ~~~~G~~e~~l~~~~~~~~~~~-~~iLfiD 274 (758)
T 3pxi_A 246 TKYRGEFEDRLKKVMDEIRQAG-NIILFID 274 (758)
T ss_dssp -------CTTHHHHHHHHHTCC-CCEEEEC
T ss_pred ccccchHHHHHHHHHHHHHhcC-CEEEEEc
Confidence 2234455567888999888644 7899999
No 80
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=3.5e-09 Score=106.31 Aligned_cols=98 Identities=27% Similarity=0.360 Sum_probs=60.4
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCC-----cchhhcCCCcccchh
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL-----DYAMMTGGDVAPLGA 428 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~-----~~~~v~~~~l~~~~~ 428 (466)
+..|++++|++.+...|...+.. +..| |+|||||||||||++++++++.+.. .+..+++++. .+.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~------g~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~--~~~ 90 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDE------GKLP--HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD--RGI 90 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT------TCCC--CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC--CSH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc------CCCc--eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc--ccH
Confidence 44678899999888877765432 1222 5999999999999999999998732 2344444432 121
Q ss_pred HHHHH-HHHHHhhhh-hccCceEEEeccccccccc
Q 012305 429 QAVTK-IHEIFDWAK-KSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 429 e~~~~-l~~lf~~A~-~~~~~~iLflDEid~l~~~ 461 (466)
+.... +..+..... -...+.|+||||+|.|...
T Consensus 91 ~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~ 125 (340)
T 1sxj_C 91 DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA 125 (340)
T ss_dssp HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH
Confidence 21111 112211100 0123689999999998643
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=1.5e-08 Score=100.82 Aligned_cols=91 Identities=10% Similarity=0.100 Sum_probs=57.6
Q ss_pred eCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh------CCcchhhcCCCcccchhHHHHHHH
Q 012305 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS------GLDYAMMTGGDVAPLGAQAVTKIH 435 (466)
Q Consensus 362 g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l------~~~~~~v~~~~l~~~~~e~~~~l~ 435 (466)
|++++++.|...+.. .+ ..++|||||||||||++|+++++.+ ..+|..++..+- .. ....++
T Consensus 1 g~~~~~~~L~~~i~~---~~-----~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-~~---~id~ir 68 (305)
T 2gno_A 1 GAKDQLETLKRIIEK---SE-----GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-NI---GIDDIR 68 (305)
T ss_dssp ---CHHHHHHHHHHT---CS-----SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-CB---CHHHHH
T ss_pred ChHHHHHHHHHHHHC---CC-----CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-CC---CHHHHH
Confidence 556667766655332 21 2379999999999999999999864 234555544320 11 234456
Q ss_pred HHHhhhhhc---cCceEEEeccccccccccCC
Q 012305 436 EIFDWAKKS---KKGLLLFIDEADAFLCDNQD 464 (466)
Q Consensus 436 ~lf~~A~~~---~~~~iLflDEid~l~~~r~~ 464 (466)
.+++.+... +++.|+||||+|.|....+|
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~lt~~a~n 100 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCERMTQQAAN 100 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGGBCHHHHH
T ss_pred HHHHHHhhccccCCceEEEeccHHHhCHHHHH
Confidence 666666543 23589999999999866544
No 82
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.63 E-value=2.6e-09 Score=113.23 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=55.0
Q ss_pred CCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCC--cchhhcCCCccc---chhHHHH
Q 012305 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDVAP---LGAQAVT 432 (466)
Q Consensus 358 ~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~--~~~~v~~~~l~~---~~~e~~~ 432 (466)
..+||++.+++.+...+.. ..+|||+||||||||++|++|+..++. +|..++|.-..+ +|.....
T Consensus 22 ~~ivGq~~~i~~l~~al~~----------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~ 91 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS----------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQ 91 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH----------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC--
T ss_pred hhhHHHHHHHHHHHHHHhc----------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHH
Confidence 3588999988776544221 136999999999999999999998843 444444431111 0100000
Q ss_pred --HHHHHHhhhhhcc--CceEEEecccccccccc
Q 012305 433 --KIHEIFDWAKKSK--KGLLLFIDEADAFLCDN 462 (466)
Q Consensus 433 --~l~~lf~~A~~~~--~~~iLflDEid~l~~~r 462 (466)
.-.+.|..+.... .++|||||||+.+.++.
T Consensus 92 ~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~ 125 (500)
T 3nbx_X 92 ALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAI 125 (500)
T ss_dssp --------CBCCTTSGGGCSEEEEESGGGCCHHH
T ss_pred HHhhchhHHhhhccCCCcceeeeHHhHhhhcHHH
Confidence 1123333222111 25799999999876543
No 83
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=1.1e-08 Score=102.57 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=38.4
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l 411 (466)
+..|+++||++.....+...+. ..+..| ++||+||||||||+++++|++.+
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~-----~~~~~~--~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSD-----QPRDLP--HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTT-----CTTCCC--CEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHHh-----hCCCCC--eEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999988877765420 111222 49999999999999999999965
No 84
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.62 E-value=4.8e-09 Score=104.40 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=55.0
Q ss_pred ccCCCCeeeCc-chHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhC----CcchhhcCCCcccchh
Q 012305 354 IKNNGDIILHP-SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG----LDYAMMTGGDVAPLGA 428 (466)
Q Consensus 354 ~~~l~~vVg~~-~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~----~~~~~v~~~~l~~~~~ 428 (466)
..+|+++++.. .....+..+..++..... .+..+++||||||||||+++.+|+..+. .+++.++++++.....
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~--~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~ 197 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPS--AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK 197 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSC--SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccc--cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence 35788888755 323233333333333211 1246899999999999999999998664 5555555443211000
Q ss_pred H--HHHHHHHHHhhhhhccCceEEEeccccccc
Q 012305 429 Q--AVTKIHEIFDWAKKSKKGLLLFIDEADAFL 459 (466)
Q Consensus 429 e--~~~~l~~lf~~A~~~~~~~iLflDEid~l~ 459 (466)
. ....+..++.... ...+|||||++...
T Consensus 198 ~~~~~~~~~~~~~~~~---~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 198 NAISNGSVKEEIDAVK---NVPVLILDDIGAEQ 227 (308)
T ss_dssp CCCC----CCTTHHHH---TSSEEEEETCCC--
T ss_pred HHhccchHHHHHHHhc---CCCEEEEcCCCCCC
Confidence 0 0001111222222 25799999997643
No 85
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.56 E-value=3.5e-08 Score=87.72 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=45.0
Q ss_pred cccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccchhHHHHHHHHHHhhhhhccCceEEEecccccccc
Q 012305 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLC 460 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~ 460 (466)
..+++|+||+|||||+++++++..+ |.+++.+++.++... ... ..+.+|||||++.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------~~~---~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------DAA---FEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------GGG---GGCSEEEEESTTCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------HHH---hCCCEEEEeCccccCh
Confidence 3569999999999999999999987 666777777765433 111 1267999999998654
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.53 E-value=8.9e-08 Score=97.49 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=65.0
Q ss_pred ccCCCCeeeCcchHHHHHHHH-Hhhccccccccccccccc--cCCCCCCchHHHHHHHHhh---------CCcchhhcCC
Q 012305 354 IKNNGDIILHPSLQRRIQHLA-KATANTKIHQAPFRNMLF--YGPPGTGKTMVAREIARKS---------GLDYAMMTGG 421 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~-~~~~~~~~~~~p~~~vLl--~GppGTGKT~lA~alA~~l---------~~~~~~v~~~ 421 (466)
....+.++|.+.....|...+ ....... .....+++| +||||||||++++.+++.+ +..++.++|.
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~--~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGA--GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSS--CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCC--CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC
Confidence 344577999998888887765 4432220 012347899 9999999999999998876 4456667763
Q ss_pred Cccc---c---------------hhHHHHHHHHHHhhhhhccCceEEEecccccccc
Q 012305 422 DVAP---L---------------GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLC 460 (466)
Q Consensus 422 ~l~~---~---------------~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~ 460 (466)
.... . +......+..+.......+.+.||||||++.+..
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLS 152 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHS
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhh
Confidence 3211 0 0001111233333333334478999999999864
No 87
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.46 E-value=1.2e-07 Score=95.14 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=48.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchh--hcC--------------CCcccch------hHHHHHHHHHHhhhhhc-
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM--MTG--------------GDVAPLG------AQAVTKIHEIFDWAKKS- 444 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~--v~~--------------~~l~~~~------~e~~~~l~~lf~~A~~~- 444 (466)
..+|||||||||||++|+.+++.+...... ..| .++..+. .-....++.+++.+...
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~ 104 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHA 104 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhcc
Confidence 469999999999999999999988432110 001 1221111 11234566676666532
Q ss_pred --cCceEEEecccccccccc
Q 012305 445 --KKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 445 --~~~~iLflDEid~l~~~r 462 (466)
+.+.|+||||+|.|....
T Consensus 105 ~~~~~kvviIdead~l~~~a 124 (334)
T 1a5t_A 105 RLGGAKVVWVTDAALLTDAA 124 (334)
T ss_dssp TTSSCEEEEESCGGGBCHHH
T ss_pred ccCCcEEEEECchhhcCHHH
Confidence 346899999999997543
No 88
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.46 E-value=3.8e-09 Score=114.35 Aligned_cols=70 Identities=21% Similarity=0.240 Sum_probs=44.4
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchh----hcCCCccc-chhHH----HHHHHHHHhhhhhccCceEEEeccccccc
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM----MTGGDVAP-LGAQA----VTKIHEIFDWAKKSKKGLLLFIDEADAFL 459 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~----v~~~~l~~-~~~e~----~~~l~~lf~~A~~~~~~~iLflDEid~l~ 459 (466)
||||+||||||||++|++|+..++..+.. +++.++.. ..... .....+.+..+. ++||||||||.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~----~gil~IDEid~l~ 404 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLAD----GGIAVIDEIDKMR 404 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHS----SSEECCTTTTCCC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecC----CCcEEeehhhhCC
Confidence 79999999999999999999998654433 23333321 10000 000112233332 6899999999987
Q ss_pred ccc
Q 012305 460 CDN 462 (466)
Q Consensus 460 ~~r 462 (466)
.+.
T Consensus 405 ~~~ 407 (595)
T 3f9v_A 405 DED 407 (595)
T ss_dssp SHH
T ss_pred HhH
Confidence 654
No 89
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.32 E-value=2.5e-07 Score=86.54 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=25.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
+++|||||||||||++|.+|++.++..++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 46999999999999999999999865443
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.31 E-value=4.4e-07 Score=107.46 Aligned_cols=110 Identities=13% Similarity=0.140 Sum_probs=66.6
Q ss_pred ccccCCCCeeeCcchHHHHHHHHHhhc-c-------------ccc-----------------ccccccc--ccccCCCCC
Q 012305 352 EAIKNNGDIILHPSLQRRIQHLAKATA-N-------------TKI-----------------HQAPFRN--MLFYGPPGT 398 (466)
Q Consensus 352 ~~~~~l~~vVg~~~~~~~l~~~~~~~~-~-------------~~~-----------------~~~p~~~--vLl~GppGT 398 (466)
.....|++|-|.++.+..+...+.+-- . .+. .+.++++ +|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 345678888888777766654333211 1 011 1335555 999999999
Q ss_pred CchHHHHHHHHhh---CCcchhhcCCCcc-------------cchhH----HHHHHHHHHhhhhhccCceEEEecccccc
Q 012305 399 GKTMVAREIARKS---GLDYAMMTGGDVA-------------PLGAQ----AVTKIHEIFDWAKKSKKGLLLFIDEADAF 458 (466)
Q Consensus 399 GKT~lA~alA~~l---~~~~~~v~~~~l~-------------~~~~e----~~~~l~~lf~~A~~~~~~~iLflDEid~l 458 (466)
|||+||++++.+. |.+.+.|+..... .+..+ +...+..+|..|+... +++||+|++|+|
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~-~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA-VDVIVVDSVAAL 1172 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC-CSEEEESCGGGC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcC-CeEEEeCchHhc
Confidence 9999999998877 3444444433322 22233 5677888888887655 899999999999
Q ss_pred cccc
Q 012305 459 LCDN 462 (466)
Q Consensus 459 ~~~r 462 (466)
.+.+
T Consensus 1173 ~~~~ 1176 (1706)
T 3cmw_A 1173 TPKA 1176 (1706)
T ss_dssp CCHH
T ss_pred Cccc
Confidence 8873
No 91
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.27 E-value=1.4e-07 Score=102.17 Aligned_cols=49 Identities=29% Similarity=0.360 Sum_probs=39.2
Q ss_pred ccCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhC
Q 012305 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 354 ~~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
+..|++++|+..+.+.+...+.. ..+++|+||||||||+++++|+..++
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~----------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQ----------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccceEECchhhHhhccccccC----------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 44578899999888777655332 13699999999999999999999884
No 92
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.19 E-value=8.8e-07 Score=88.40 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=45.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchhhcC--CCc-ccchhHHHHHHHHHHhhhhhccCceEEEeccccccccc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG--GDV-APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~--~~l-~~~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~~ 461 (466)
+.+||+||||||||+||..++...|.+++.++. .+. ..+..+....+..+++.+... . +||||+++.+...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~--~-LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH--R-VIVIDSLKNVIGA 197 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC--S-EEEEECCTTTC--
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC--C-EEEEecccccccc
Confidence 457999999999999999998876665444444 221 111122233444555555432 2 9999999998653
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.13 E-value=9.7e-07 Score=82.31 Aligned_cols=74 Identities=20% Similarity=0.374 Sum_probs=43.6
Q ss_pred cccccCCCCCCchHHHHHHHHh--------hC-CcchhhcCCCccc--c----------h-hHHHHHHHHHHhhhh-hcc
Q 012305 389 NMLFYGPPGTGKTMVAREIARK--------SG-LDYAMMTGGDVAP--L----------G-AQAVTKIHEIFDWAK-KSK 445 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~--------l~-~~~~~v~~~~l~~--~----------~-~e~~~~l~~lf~~A~-~~~ 445 (466)
.+||+|+||||||++|..+... .| .+++..+++++.. . . .........+++|+. ..+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 4789999999999998886433 23 4444444444321 1 0 000001133445531 123
Q ss_pred CceEEEecccccccccc
Q 012305 446 KGLLLFIDEADAFLCDN 462 (466)
Q Consensus 446 ~~~iLflDEid~l~~~r 462 (466)
+++||||||++.+++.+
T Consensus 87 ~~~vliIDEAq~l~~~~ 103 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPAR 103 (199)
T ss_dssp TTCEEEETTGGGTSBCC
T ss_pred CceEEEEEChhhhccCc
Confidence 48999999999997665
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.02 E-value=2.8e-06 Score=84.10 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=39.5
Q ss_pred CCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCC
Q 012305 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421 (466)
Q Consensus 357 l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~ 421 (466)
...++|.+.....|.. + .. +.++|+||+|+|||++++.+++..+..++.+++.
T Consensus 12 ~~~~~gR~~el~~L~~-l---~~--------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-L---RA--------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp GGGSCCCHHHHHHHHH-T---CS--------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred HHHhcChHHHHHHHHH-h---cC--------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 3568888776666654 2 21 3699999999999999999999886666666554
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.95 E-value=5.8e-06 Score=101.96 Aligned_cols=98 Identities=23% Similarity=0.365 Sum_probs=55.4
Q ss_pred CCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHH-HHHhhCCcchhhcCCCcccchhHHHHHHH
Q 012305 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVARE-IARKSGLDYAMMTGGDVAPLGAQAVTKIH 435 (466)
Q Consensus 357 l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~a-lA~~l~~~~~~v~~~~l~~~~~e~~~~l~ 435 (466)
+.+++.+..-..+...++..+.... ++|||+||||||||++|+. ++...+..++.++++..... ......+.
T Consensus 1243 ~~~iiVpT~DT~R~~~ll~~~l~~~------~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~-~~~~~~i~ 1315 (2695)
T 4akg_A 1243 RPDIVIPTIDTIKHEKIFYDLLNSK------RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT-EHILSALH 1315 (2695)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHT------CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH-HHHHHHHH
T ss_pred ccceeEeccchHHHHHHHHHHHHCC------CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH-HHHHHHHH
Confidence 4445544444445555544433222 4699999999999999954 45544777788887765321 11112222
Q ss_pred HHHhhhhh----------ccCceEEEeccccccccc
Q 012305 436 EIFDWAKK----------SKKGLLLFIDEADAFLCD 461 (466)
Q Consensus 436 ~lf~~A~~----------~~~~~iLflDEid~l~~~ 461 (466)
..++.... .+..+|||||||+....+
T Consensus 1316 ~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d 1351 (2695)
T 4akg_A 1316 RHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLD 1351 (2695)
T ss_dssp HHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCC
T ss_pred HHhhhccccCCccccCCCCCceEEEEeccccccccc
Confidence 22211110 122479999999875444
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.89 E-value=7.8e-06 Score=80.77 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=36.2
Q ss_pred CCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhC
Q 012305 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 358 ~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
..++|.+.....|...+.. + +.++|+||+|+|||++++.+++..+
T Consensus 12 ~~~~gR~~el~~L~~~l~~-------~---~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN-------Y---PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH-------C---SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred HhcCChHHHHHHHHHHHhc-------C---CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 5688988888887765432 1 3699999999999999999998865
No 97
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.76 E-value=2e-05 Score=94.60 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=49.3
Q ss_pred cccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcc-c-----ch-----------hHHHHHHHHHHhhhhhccC
Q 012305 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVA-P-----LG-----------AQAVTKIHEIFDWAKKSKK 446 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~-~-----~~-----------~e~~~~l~~lf~~A~~~~~ 446 (466)
.++++||||||||||+||.+++... |..++.++..... + +| ......+..++..++..+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~- 1505 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA- 1505 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCC-
Confidence 4689999999999999999997765 4444555443321 1 00 011234455555665544
Q ss_pred ceEEEeccccccccc
Q 012305 447 GLLLFIDEADAFLCD 461 (466)
Q Consensus 447 ~~iLflDEid~l~~~ 461 (466)
+++||||+++.+.+.
T Consensus 1506 ~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1506 VDVIVVDSVAALTPK 1520 (2050)
T ss_dssp CSEEEESCGGGCCCH
T ss_pred CCEEEEcChhHhccc
Confidence 899999999988763
No 98
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.60 E-value=7.3e-05 Score=77.73 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=50.6
Q ss_pred ccccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCccc---------------------chhHHHHHHHHHHhhh
Q 012305 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP---------------------LGAQAVTKIHEIFDWA 441 (466)
Q Consensus 386 p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~---------------------~~~e~~~~l~~lf~~A 441 (466)
++..++|+|+||+||||++..||..+ |..++.+.++..-+ .+.+....+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999877 67777776654311 1112333445566666
Q ss_pred hhccCceEEEeccccccc
Q 012305 442 KKSKKGLLLFIDEADAFL 459 (466)
Q Consensus 442 ~~~~~~~iLflDEid~l~ 459 (466)
...+ +++||||.++.+.
T Consensus 179 ~~~~-~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 179 KSKG-VDIIIVDTAGRHK 195 (443)
T ss_dssp HHTT-CSEEEEECCCCSS
T ss_pred HhCC-CCEEEEECCCccc
Confidence 5433 7899999987654
No 99
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.57 E-value=5e-05 Score=69.22 Aligned_cols=24 Identities=33% Similarity=0.760 Sum_probs=22.0
Q ss_pred cccccCCCCCCchHHHHHHHHhhC
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
++.|+||+|+|||||++.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998875
No 100
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.55 E-value=3.5e-05 Score=73.89 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=31.3
Q ss_pred ccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCc
Q 012305 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 423 (466)
Q Consensus 384 ~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l 423 (466)
...+..++|+||||+||||+++.|+..++..++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3344679999999999999999999998765555555443
No 101
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.53 E-value=4.1e-05 Score=74.36 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=22.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
.++|||||||||||+++.+|++.+
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhh
Confidence 469999999999999999999975
No 102
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.51 E-value=5e-05 Score=67.25 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=25.2
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
.|+|.|||||||||+++.|+..+|++|+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i 30 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPII 30 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeee
Confidence 4889999999999999999999987654
No 103
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.50 E-value=3.3e-05 Score=69.69 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=27.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
.+|+|+||||||||++++.|+..+|.+|+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999998877643
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.48 E-value=9e-05 Score=91.63 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=62.7
Q ss_pred CeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcccchhHHHHHHHHHH
Q 012305 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIF 438 (466)
Q Consensus 359 ~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~~~~e~~~~l~~lf 438 (466)
.+|..|-..+.+..+...+... .+++++||||||||++++.||+.+|.+++.++|++-... ..+..+|
T Consensus 624 rlViTPltdr~~~tl~~Al~~~-------~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~-----~~lg~~~ 691 (2695)
T 4akg_A 624 RLIYTPLLLIGFATLTDSLHQK-------YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY-----QVLSRLL 691 (2695)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTT-------CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH-----HHHHHHH
T ss_pred cceecHHHHHHHHHHHHHHHhC-------CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh-----hHhhHHH
Confidence 3555555555555554444321 248899999999999999999999999999999874332 2345556
Q ss_pred hhhhhccCceEEEecccccccc
Q 012305 439 DWAKKSKKGLLLFIDEADAFLC 460 (466)
Q Consensus 439 ~~A~~~~~~~iLflDEid~l~~ 460 (466)
..+... |..++|||++.+..
T Consensus 692 ~g~~~~--Gaw~~~DE~nr~~~ 711 (2695)
T 4akg_A 692 VGITQI--GAWGCFDEFNRLDE 711 (2695)
T ss_dssp HHHHHH--TCEEEEETTTSSCH
T ss_pred HHHHhc--CCEeeehhhhhcCh
Confidence 555432 68999999988654
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.46 E-value=2.4e-05 Score=71.67 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=39.3
Q ss_pred cccccCCCCCCchHHHHHHHHhh---CCcchhhcCC-C-------ccc-chh----HHHHHHHHHHhhhhhccCceEEEe
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG-D-------VAP-LGA----QAVTKIHEIFDWAKKSKKGLLLFI 452 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~-~-------l~~-~~~----e~~~~l~~lf~~A~~~~~~~iLfl 452 (466)
-++++||||+|||+++..++..+ |..++.+... + +.. .+. ........+++.+. ..+.+|||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~--~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE--EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC--TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc--CCCCEEEE
Confidence 47899999999999986665543 5554443211 0 000 000 00112233444443 24789999
Q ss_pred cccccccc
Q 012305 453 DEADAFLC 460 (466)
Q Consensus 453 DEid~l~~ 460 (466)
|||..+.+
T Consensus 83 DE~Q~~~~ 90 (184)
T 2orw_A 83 DEVQFFNP 90 (184)
T ss_dssp CCGGGSCT
T ss_pred ECcccCCH
Confidence 99988743
No 106
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.45 E-value=8.2e-05 Score=72.94 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=36.9
Q ss_pred cchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcC
Q 012305 364 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 420 (466)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~ 420 (466)
.+....+..++..+-........+..++|+||||+||||+++.|+..++..++.|++
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 344445555444433333333334578999999999999999999988544455554
No 107
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.44 E-value=4.5e-05 Score=68.30 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=26.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
..|+|+|+||+||||+++.|+..++.+|+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~ 33 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLA 33 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 458999999999999999999999877664
No 108
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.44 E-value=8.7e-05 Score=68.45 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=27.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchhhcCCC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 422 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~ 422 (466)
..++|+||||+|||+|+..++...+..++.+++..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 35889999999999999999885566666666544
No 109
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.42 E-value=0.00017 Score=67.60 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=26.6
Q ss_pred ccccccCCCCCCchHHHHHHHHh--h-------CCcchhhcCCC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK--S-------GLDYAMMTGGD 422 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~--l-------~~~~~~v~~~~ 422 (466)
..++|+||||+|||+|+..++.. + +..++.+++.+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 35889999999999999999884 2 34455565544
No 110
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.39 E-value=5.8e-05 Score=69.37 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=27.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
..++|+|||||||||+++.|+..+|.+|+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4699999999999999999999998877643
No 111
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.32 E-value=0.0001 Score=75.26 Aligned_cols=62 Identities=19% Similarity=0.150 Sum_probs=41.0
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcccchhHHHHHHHHHHhhhhhccCceEEEecccccccc
Q 012305 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLC 460 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~~ 460 (466)
...++|+|||||||||+++.|+..++..++.+..++- .. ...+..+|+ ..++|+|+++.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~---~~--~~~lg~~~q-------~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD---RL--NFELGVAID-------QFLVVFEDVKGTGG 230 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT---TH--HHHHGGGTT-------CSCEEETTCCCSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch---hH--HHHHHHhcc-------hhHHHHHHHHHHHH
Confidence 3579999999999999999999988766554333221 10 001122222 35679999998764
No 112
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.32 E-value=7.7e-05 Score=67.10 Aligned_cols=31 Identities=48% Similarity=0.845 Sum_probs=27.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
.+|+|+|+||+|||++++.|+..+|..++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4699999999999999999999998877654
No 113
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.32 E-value=8.8e-05 Score=77.38 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=34.0
Q ss_pred cCCCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhh
Q 012305 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 355 ~~l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+|+++ .++....+..+...+.... .++||+||||||||+++..++..+
T Consensus 21 ~~~~~L--n~~Q~~av~~~~~~i~~~~------~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 21 MTFDDL--TEGQKNAFNIVMKAIKEKK------HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CCSSCC--CHHHHHHHHHHHHHHHSSS------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccccC--CHHHHHHHHHHHHHHhcCC------CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345554 3455555655555544322 259999999999999999998877
No 114
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.32 E-value=0.00013 Score=69.10 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=41.5
Q ss_pred cccccCCCCCCchHHHHHHHHhh---CCcchhhcCC-------Cccc-chhH----HHHHHHHHHhhhhh---ccCceEE
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG-------DVAP-LGAQ----AVTKIHEIFDWAKK---SKKGLLL 450 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~-------~l~~-~~~e----~~~~l~~lf~~A~~---~~~~~iL 450 (466)
-++++||||+|||+++..++..+ |..++.++.. .+.. +|.. .......+++.+.. ..++++|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 47889999999999988887666 5555544211 1111 1110 01112234444432 2347899
Q ss_pred Eeccccccc
Q 012305 451 FIDEADAFL 459 (466)
Q Consensus 451 flDEid~l~ 459 (466)
+|||+..|.
T Consensus 94 iIDEaQ~l~ 102 (223)
T 2b8t_A 94 GIDEVQFFD 102 (223)
T ss_dssp EECSGGGSC
T ss_pred EEecCccCc
Confidence 999998764
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.32 E-value=0.00017 Score=66.83 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..++|+||||+|||+|++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358899999999999999998654
No 116
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.31 E-value=5.7e-05 Score=69.60 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=21.0
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|+||+|+||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 117
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.28 E-value=8.7e-05 Score=65.96 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=27.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
.+++|.|+|||||||+++.|+..+|.+|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999887643
No 118
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.27 E-value=0.00021 Score=72.35 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=46.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCccc------chh----------HHHHHHHHHHhhhhhccCce
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LGA----------QAVTKIHEIFDWAKKSKKGL 448 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~------~~~----------e~~~~l~~lf~~A~~~~~~~ 448 (466)
..++|+||||||||+||..++... |.+++.++...... ++. .....+..+++.........
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 468999999999999999998765 55666666533211 000 01122333333322233478
Q ss_pred EEEecccccccc
Q 012305 449 LLFIDEADAFLC 460 (466)
Q Consensus 449 iLflDEid~l~~ 460 (466)
+||||.+..+..
T Consensus 144 lVVIDsl~~l~~ 155 (356)
T 1u94_A 144 VIVVDSVAALTP 155 (356)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcCHHHhcc
Confidence 999999999874
No 119
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.27 E-value=0.00029 Score=73.06 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=46.8
Q ss_pred ccccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCccc---------------------chhHHHHHHHHHHhhh
Q 012305 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP---------------------LGAQAVTKIHEIFDWA 441 (466)
Q Consensus 386 p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~---------------------~~~e~~~~l~~lf~~A 441 (466)
++..++|+||+|+||||++..||..+ |..++.++++...+ .+.+........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 34678999999999999999998777 66666665543211 0011122233444444
Q ss_pred hhccCceEEEeccccccc
Q 012305 442 KKSKKGLLLFIDEADAFL 459 (466)
Q Consensus 442 ~~~~~~~iLflDEid~l~ 459 (466)
... .+++||||..+.+.
T Consensus 176 ~~~-~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 176 VKN-KMDIIIVDTAGRHG 192 (433)
T ss_dssp TTT-TCSEEEEEECCCSS
T ss_pred Hhc-CCCEEEEECCCCcc
Confidence 432 37899999998754
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.27 E-value=0.0002 Score=72.21 Aligned_cols=73 Identities=27% Similarity=0.322 Sum_probs=43.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCccc------chh----------HHHHHHHHHHhhhhhccCce
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LGA----------QAVTKIHEIFDWAKKSKKGL 448 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~------~~~----------e~~~~l~~lf~~A~~~~~~~ 448 (466)
..++|+||||+|||+|+..++... |..++.++...... ++. .+...+..+.+.......+.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 458999999999999999997665 45555555433211 010 01112222222222233478
Q ss_pred EEEecccccccc
Q 012305 449 LLFIDEADAFLC 460 (466)
Q Consensus 449 iLflDEid~l~~ 460 (466)
+||||++..+.+
T Consensus 142 lIVIDsl~~l~~ 153 (349)
T 2zr9_A 142 IIVIDSVAALVP 153 (349)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcChHhhcc
Confidence 999999999873
No 121
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.26 E-value=9.6e-05 Score=66.24 Aligned_cols=29 Identities=34% Similarity=0.585 Sum_probs=26.3
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
+++|.|||||||||+++.|+..+|.+|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999887654
No 122
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.25 E-value=7.4e-05 Score=80.37 Aligned_cols=72 Identities=25% Similarity=0.474 Sum_probs=42.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCccc--ch---hHHHHHHHHHHhhhh--------hccCceEEE
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP--LG---AQAVTKIHEIFDWAK--------KSKKGLLLF 451 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~--~~---~e~~~~l~~lf~~A~--------~~~~~~iLf 451 (466)
+.++|+||||||||+++..+...+ |.+++.+....... +. +.....++.++.+.. ...+.++||
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 368999999999999999998765 44443332111000 00 001223455553321 112368999
Q ss_pred eccccccc
Q 012305 452 IDEADAFL 459 (466)
Q Consensus 452 lDEid~l~ 459 (466)
|||+..+.
T Consensus 285 IDEasml~ 292 (574)
T 3e1s_A 285 VDEVSMMG 292 (574)
T ss_dssp ECCGGGCC
T ss_pred EcCccCCC
Confidence 99998764
No 123
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.24 E-value=0.00011 Score=66.31 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=26.5
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
.|+|+|+||||||++++.|+..+|.+|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 589999999999999999999998876543
No 124
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.21 E-value=0.0001 Score=64.94 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=25.3
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
.|+|+||||+||||+++.| ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888876654
No 125
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.20 E-value=0.00023 Score=71.96 Aligned_cols=73 Identities=23% Similarity=0.252 Sum_probs=44.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCccc------ch----------hHHHHHHHHHHhhhhhccCce
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP------LG----------AQAVTKIHEIFDWAKKSKKGL 448 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~------~~----------~e~~~~l~~lf~~A~~~~~~~ 448 (466)
..++|+||||||||+|+..++..+ +..++.+++..... ++ ......+..+.+.......++
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 458899999999999999998775 55566666544211 00 001111112222221223478
Q ss_pred EEEecccccccc
Q 012305 449 LLFIDEADAFLC 460 (466)
Q Consensus 449 iLflDEid~l~~ 460 (466)
+|+||.+..+.+
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999998875
No 126
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.19 E-value=0.00013 Score=64.98 Aligned_cols=29 Identities=31% Similarity=0.787 Sum_probs=25.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
..++|+|||||||||+++.|+..++.+|+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 35899999999999999999999887654
No 127
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.19 E-value=1.6e-05 Score=82.97 Aligned_cols=95 Identities=8% Similarity=0.017 Sum_probs=51.3
Q ss_pred eeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHH-HHhhCCc-chhhcCCCccc-chh--HH--HH
Q 012305 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREI-ARKSGLD-YAMMTGGDVAP-LGA--QA--VT 432 (466)
Q Consensus 360 vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~al-A~~l~~~-~~~v~~~~l~~-~~~--e~--~~ 432 (466)
|+|++.++..|.-.+.. .... ....-||||.|+||| ||++++++ +..+... |....++.... .+. +. ..
T Consensus 215 I~G~e~vK~aLll~L~G--G~~k-~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~ 290 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFS--CVGK-NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWA 290 (506)
T ss_dssp STTCHHHHHHHHHHHTT--CCSS-GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEE
T ss_pred cCCCHHHHHHHHHHHcC--Cccc-cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcc
Confidence 78888876655432211 1100 111237999999999 99999999 7765322 21111111000 000 00 01
Q ss_pred HHHHHHhhhhhccCceEEEecccccccccc
Q 012305 433 KIHEIFDWAKKSKKGLLLFIDEADAFLCDN 462 (466)
Q Consensus 433 ~l~~lf~~A~~~~~~~iLflDEid~l~~~r 462 (466)
...+.+..|. ++|||||||+.|..+-
T Consensus 291 ~~~G~l~LAd----gGvl~lDEIn~~~~~~ 316 (506)
T 3f8t_A 291 LRAGAAVLAD----GGILAVDHLEGAPEPH 316 (506)
T ss_dssp EEECHHHHTT----TSEEEEECCTTCCHHH
T ss_pred cCCCeeEEcC----CCeeehHhhhhCCHHH
Confidence 1123334443 6899999999987543
No 128
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.19 E-value=0.00027 Score=71.80 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=45.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCccc-c-----hh----------HHHHHHHHHHhhhhhccCce
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP-L-----GA----------QAVTKIHEIFDWAKKSKKGL 448 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~-~-----~~----------e~~~~l~~lf~~A~~~~~~~ 448 (466)
..++|+||||+|||+||..++... |.+++.++...... . +. .....+...++........+
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 458899999999999999987765 55666665543211 0 00 11122222333222234478
Q ss_pred EEEecccccccc
Q 012305 449 LLFIDEADAFLC 460 (466)
Q Consensus 449 iLflDEid~l~~ 460 (466)
+||||.+..+.+
T Consensus 155 lVVIDsl~~l~~ 166 (366)
T 1xp8_A 155 VVVVDSVAALTP 166 (366)
T ss_dssp EEEEECTTTCCC
T ss_pred EEEEeChHHhcc
Confidence 999999999874
No 129
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.18 E-value=0.00012 Score=66.05 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=26.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
..|+|.|+||+||||+++.|+..+|.+++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 468899999999999999999999876654
No 130
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.17 E-value=0.00012 Score=66.42 Aligned_cols=31 Identities=42% Similarity=0.612 Sum_probs=26.8
Q ss_pred ccccccCCCCCCchHHHHHHHHh-hCCcchhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK-SGLDYAMM 418 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~-l~~~~~~v 418 (466)
.+|+|+|+||||||++++.|+.. +|.+|+.+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 46999999999999999999999 68776553
No 131
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.16 E-value=8.5e-05 Score=67.24 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=27.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchhhcCC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~ 421 (466)
..++|+||||+||||+++.|+..++...+.+++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d 43 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEccc
Confidence 3588999999999999999999876655555544
No 132
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.15 E-value=0.00045 Score=68.41 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=27.0
Q ss_pred ccccccccCCCCCCchHHHHHHHHhh---CCcchhhcC
Q 012305 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (466)
Q Consensus 386 p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~ 420 (466)
++..++|+||+|+||||++..||..+ |..++.+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 34568899999999999999999876 455554444
No 133
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.13 E-value=0.00018 Score=65.98 Aligned_cols=31 Identities=35% Similarity=0.584 Sum_probs=26.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
..|+|+|+|||||||+++.|+..+|.+++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3588999999999999999999998876543
No 134
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.13 E-value=0.00015 Score=65.37 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
..|+|+|+|||||||+++.|+..+|.+++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 45899999999999999999999987654
No 135
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.11 E-value=0.00047 Score=68.55 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=27.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---------CCcchhhcCCC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---------GLDYAMMTGGD 422 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---------~~~~~~v~~~~ 422 (466)
..++|+||||||||+++..++... +..++.++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 458899999999999999998764 44556665544
No 136
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.11 E-value=0.00017 Score=64.10 Aligned_cols=29 Identities=34% Similarity=0.626 Sum_probs=26.0
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
.|+|+|+||||||++++.|+..+|.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999887653
No 137
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.09 E-value=0.00017 Score=65.36 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=26.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
..|+|.|+|||||||+++.|+..+|.+++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 35899999999999999999999987755
No 138
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.08 E-value=0.00046 Score=71.62 Aligned_cols=35 Identities=34% Similarity=0.500 Sum_probs=28.8
Q ss_pred cccccccCCCCCCchHHHHHHHHhh---CCcchhhcCC
Q 012305 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG 421 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~ 421 (466)
+..++|+|+||+||||++..|+..+ |..++.++++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4579999999999999999998876 5666666654
No 139
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.07 E-value=0.00018 Score=64.72 Aligned_cols=29 Identities=34% Similarity=0.684 Sum_probs=25.6
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
.++|+|+|||||||+++.|+..+|.+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 58899999999999999999998876543
No 140
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.04 E-value=0.00017 Score=64.27 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=23.9
Q ss_pred ccccccCCCCCCchHHHHHHHH-hhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIAR-KSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~-~l~~~~~ 416 (466)
..|+|.||||+||||+++.|+. .+|..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 3588999999999999999998 5665443
No 141
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.04 E-value=0.00019 Score=64.34 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
..|+|+|+|||||||+++.|+..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 35889999999999999999999998876
No 142
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.04 E-value=0.00021 Score=66.46 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=26.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
..|+|.|+||+||||+++.|+..++.+++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 468999999999999999999999877654
No 143
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.03 E-value=0.00025 Score=65.06 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=25.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
..|+|+|+||+||||+++.|+..+|..++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i 47 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFI 47 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999986554
No 144
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.02 E-value=0.00051 Score=82.69 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=47.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccchh-H---------------HHHHHHHHHhhhhhccCce
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA-Q---------------AVTKIHEIFDWAKKSKKGL 448 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~~-e---------------~~~~l~~lf~~A~~~~~~~ 448 (466)
+++||+||||||||+|+..++... |.+++.++......... . .......+.+...+...++
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~~d 1161 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1161 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhCCCC
Confidence 679999999999999999997654 66666666655432110 0 0111223333333344589
Q ss_pred EEEecccccccc
Q 012305 449 LLFIDEADAFLC 460 (466)
Q Consensus 449 iLflDEid~l~~ 460 (466)
+||||++..|.+
T Consensus 1162 lvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1162 VIVVDSVAALTP 1173 (2050)
T ss_dssp EEEESCGGGCCC
T ss_pred EEEECCcccccc
Confidence 999999999854
No 145
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.02 E-value=0.00068 Score=72.37 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=35.8
Q ss_pred CCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHH
Q 012305 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 357 l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~ 409 (466)
...+||.+.....|...+... ....+.|+|+||+|+|||++|..++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhcc------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 356899999888887765432 11234689999999999999999864
No 146
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.02 E-value=0.00017 Score=64.85 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=25.2
Q ss_pred cccccCCCCCCchHHHHHHHHhhC-----Ccchh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSG-----LDYAM 417 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~-----~~~~~ 417 (466)
.|+|+|||||||||+++.|+..++ .+++.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 588999999999999999999887 65543
No 147
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.02 E-value=0.00021 Score=66.13 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=25.7
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
.|+|+||||+||||+++.|+..+|.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998765533
No 148
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.00 E-value=0.00022 Score=68.41 Aligned_cols=29 Identities=38% Similarity=0.564 Sum_probs=25.4
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
.++|+||||||||++++.|+..++..++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~ 31 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVA 31 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEe
Confidence 47899999999999999999999876543
No 149
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.00 E-value=0.0015 Score=64.30 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=28.1
Q ss_pred cccccccCCCCCCchHHHHHHHHhh----CCcchhhcCCC
Q 012305 387 FRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGD 422 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA~alA~~l----~~~~~~v~~~~ 422 (466)
...++|+||+|+||||++..||..+ |..+..+.++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 3568899999999999999998765 55666665544
No 150
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.00 E-value=0.00024 Score=62.75 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=25.9
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
.|+|+|+||+||||+++.|+..+|.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999877654
No 151
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.99 E-value=0.0002 Score=64.94 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=25.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
..|+|+|+|||||||+++.|+..+|.+++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 35889999999999999999999987654
No 152
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.98 E-value=0.00028 Score=64.55 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=26.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
..|+|+|+|||||||+++.|+..+|.+++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 468899999999999999999999876543
No 153
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.98 E-value=0.00024 Score=65.65 Aligned_cols=29 Identities=31% Similarity=0.482 Sum_probs=25.4
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
.|+|+||||+||||+++.|+..+|.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 37899999999999999999999876553
No 154
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.97 E-value=0.00059 Score=64.71 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=24.3
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
++|++||+|+|||.++..++..++..++.+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv 139 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIV 139 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 499999999999999998888775554443
No 155
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.95 E-value=0.00028 Score=65.79 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
..|+|.||||+||||+++.|+..++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 468999999999999999999999876554
No 156
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.95 E-value=0.00032 Score=62.63 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=25.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
..++|+||||+||||+++.|+..+|..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 46889999999999999999998876543
No 157
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.94 E-value=0.0003 Score=66.27 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=27.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
..|+|.|+|||||||+++.|+..++..|+.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4699999999999999999999998776543
No 158
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.94 E-value=0.00025 Score=63.77 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
..|+|+|+|||||||+++.|+..+|.+++
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 45889999999999999999999987655
No 159
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.94 E-value=0.001 Score=66.75 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=26.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---------CCcchhhcCCC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---------GLDYAMMTGGD 422 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---------~~~~~~v~~~~ 422 (466)
..++|+||||+|||+|+..++... +..++.+++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 457899999999999999998863 44555565544
No 160
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.92 E-value=0.00027 Score=66.14 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
..|+|+|+|||||||+++.|+..+|..++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 458999999999999999999999877653
No 161
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.92 E-value=0.00027 Score=68.36 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..++|+||+|+||||+.++|+..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 458999999999999999998876
No 162
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.91 E-value=0.00031 Score=66.53 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=26.2
Q ss_pred cccccCCCCCCchHHHHHHHHhh---CCcchhhcC
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~ 420 (466)
+++|.|+||||||+++-.+|..+ |++++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999998776 666655444
No 163
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.89 E-value=0.00031 Score=65.49 Aligned_cols=27 Identities=37% Similarity=0.797 Sum_probs=24.5
Q ss_pred ccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 390 MLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 390 vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
++|.||||+||+|.|+.|+..+|.+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 788999999999999999999987654
No 164
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.89 E-value=0.00032 Score=65.30 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=26.7
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
.|+|.|+|||||||+++.|+..+|.+++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 589999999999999999999998876643
No 165
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.89 E-value=0.00034 Score=65.89 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=25.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
+.|+|.||||+||+|.|+.|+..+|.+++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 46888999999999999999999987654
No 166
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.89 E-value=0.00034 Score=66.60 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=26.7
Q ss_pred cccccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 387 FRNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
+..|+|+||||+||||+++.|+..+|.+++.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3569999999999999999999998876543
No 167
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.88 E-value=0.00066 Score=61.30 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
..++|.|+||+||||+++.|+..++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998873
No 168
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.86 E-value=0.0011 Score=61.38 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|+||||+|||+|++.|+...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999998754
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.84 E-value=0.00042 Score=63.58 Aligned_cols=28 Identities=36% Similarity=0.783 Sum_probs=24.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDY 415 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~ 415 (466)
..++|.||||+||||+++.|+..+|..+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~ 57 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEF 57 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeE
Confidence 4588999999999999999999887543
No 170
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.81 E-value=0.00045 Score=69.71 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=28.1
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchhhc
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~v~ 419 (466)
+++|+||||+|||++++.|+..++.+|+.++
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~ 56 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHTFL 56 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeeeec
Confidence 6999999999999999999999999886643
No 171
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.81 E-value=0.00031 Score=71.08 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.3
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.++|+||+|+||||+.++++..+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 59999999999999999998876
No 172
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.80 E-value=0.00039 Score=64.46 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=26.3
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
.|+|.||||+||||+++.|+..+|.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 488999999999999999999998776554
No 173
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.79 E-value=0.00076 Score=60.96 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=25.4
Q ss_pred ccccCCCCCCchHHHHHHHHhh---CCcchhhc
Q 012305 390 MLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (466)
Q Consensus 390 vLl~GppGTGKT~lA~alA~~l---~~~~~~v~ 419 (466)
|.|.|++||||||+++.|+..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 88776443
No 174
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.76 E-value=0.0011 Score=78.98 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=49.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccchh----------------HHHHHHHHHHhhhhhccCce
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA----------------QAVTKIHEIFDWAKKSKKGL 448 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~~----------------e~~~~l~~lf~~A~~~~~~~ 448 (466)
.+++|+||||||||+||..++... |..++.++......... .....+..+++.......++
T Consensus 35 ~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~~~ 114 (1706)
T 3cmw_A 35 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 114 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhccCCC
Confidence 579999999999999999997653 56666666554322100 11223445555443334478
Q ss_pred EEEeccccccccc
Q 012305 449 LLFIDEADAFLCD 461 (466)
Q Consensus 449 iLflDEid~l~~~ 461 (466)
+||||.+..+...
T Consensus 115 LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 115 VIVVDSVAALTPK 127 (1706)
T ss_dssp EEEESCSTTCCCH
T ss_pred EEEEcchhhhccc
Confidence 9999999998764
No 175
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.74 E-value=0.00044 Score=62.07 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~ 419 (466)
..++|+|++||||||+++.|+..+ |.+++.++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 358899999999999999999987 87776554
No 176
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.74 E-value=0.00051 Score=62.36 Aligned_cols=28 Identities=29% Similarity=0.636 Sum_probs=25.0
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
.|+|.|+|||||||+++.|+..++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999987654
No 177
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.74 E-value=0.00033 Score=67.33 Aligned_cols=32 Identities=22% Similarity=0.551 Sum_probs=26.7
Q ss_pred cccccCCCCCCchHHHHHHHHh---hCCcchhhcC
Q 012305 389 NMLFYGPPGTGKTMVAREIARK---SGLDYAMMTG 420 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~---l~~~~~~v~~ 420 (466)
.|+|+|+||+||||+++.|+.. .|.+++.++.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 5899999999999999999998 5777664443
No 178
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.72 E-value=0.00054 Score=63.64 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=23.9
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcc
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDY 415 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~ 415 (466)
.+.|.|||||||||+++.|+..+|.++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~ 33 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHL 33 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 588999999999999999999887653
No 179
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.70 E-value=0.0029 Score=66.52 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..++|+||+|+||||+++.|+..+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHh
Confidence 468899999999999999999876
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.70 E-value=0.0014 Score=61.29 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=20.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..++|+||||+|||+++..++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999988886543
No 181
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.68 E-value=0.0032 Score=62.58 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=26.8
Q ss_pred ccccccccCCCCCCchHHHHHHHHhh---CCcchhhcC
Q 012305 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (466)
Q Consensus 386 p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~ 420 (466)
+...++|+||+|+||||++..||..+ |..++.+.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 44568899999999999999998876 445444443
No 182
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.68 E-value=0.0004 Score=62.42 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.2
Q ss_pred cccccCCCCCCchHHHHHHHHhhC
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
.|+|.|+|||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999885
No 183
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.67 E-value=0.0019 Score=68.24 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=29.1
Q ss_pred ccccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCC
Q 012305 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGD 422 (466)
Q Consensus 386 p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~ 422 (466)
+++.|+|+|+||+||||++..|+..+ |..++.++++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 34679999999999999999999776 67777776643
No 184
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.67 E-value=0.00059 Score=63.87 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=26.0
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
.|+|.||||+||||+++.|+..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999998765544
No 185
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.65 E-value=0.00059 Score=62.61 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=22.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGL 413 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~ 413 (466)
..|+|+|+|||||||+++.|+..++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35889999999999999999998743
No 186
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.65 E-value=0.00059 Score=62.56 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=23.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLD 414 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~ 414 (466)
..|+|+|+|||||||+++.|+..++..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 458899999999999999999987543
No 187
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.64 E-value=0.00068 Score=60.99 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=25.8
Q ss_pred cccccCCCCCCchHHHHHHHHhh---CCcchhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMM 418 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l---~~~~~~v 418 (466)
.|+|+|+|||||||+++.|+..+ |.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 37899999999999999999988 7776654
No 188
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.63 E-value=0.00057 Score=62.53 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.7
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
.|.|+|++||||||+++.|+. +|.+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i 29 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVL 29 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEE
Confidence 488999999999999999999 776654
No 189
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.60 E-value=0.0019 Score=64.27 Aligned_cols=77 Identities=10% Similarity=0.150 Sum_probs=45.3
Q ss_pred ccccccccccCCCCCCchHHHHHHHHhh-----CCcchhhcCCCccc------chh----------HHHHHH-HHHHhhh
Q 012305 384 QAPFRNMLFYGPPGTGKTMVAREIARKS-----GLDYAMMTGGDVAP------LGA----------QAVTKI-HEIFDWA 441 (466)
Q Consensus 384 ~~p~~~vLl~GppGTGKT~lA~alA~~l-----~~~~~~v~~~~l~~------~~~----------e~~~~l-~~lf~~A 441 (466)
+.|...++|+||||||||+|+..++... |..++.+++..-.. +|. .+...+ ..+.+.+
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 4454458899999999999988775544 45556666543211 111 011122 2222222
Q ss_pred --hhccCceEEEecccccccc
Q 012305 442 --KKSKKGLLLFIDEADAFLC 460 (466)
Q Consensus 442 --~~~~~~~iLflDEid~l~~ 460 (466)
-....+.+|+||=|..|.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 1234489999999999974
No 190
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.60 E-value=0.0022 Score=64.51 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..++|+||||+|||+|++.++...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998876
No 191
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.59 E-value=0.0015 Score=60.39 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=25.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMM 418 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v 418 (466)
..|++|+++|+|||++|-.++-.. |+.++.+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 369999999999999999996665 7776666
No 192
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.57 E-value=0.00069 Score=62.13 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.4
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
.+.|+||+||||||+++.|+. +|.+|+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 478999999999999999988 777654
No 193
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.56 E-value=0.00071 Score=61.63 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhh-CCcchhhc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS-GLDYAMMT 419 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l-~~~~~~v~ 419 (466)
..|+|.|+|||||||+++.|+..+ |.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 358899999999999999999998 56655443
No 194
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.51 E-value=0.0011 Score=60.57 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLD 414 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~ 414 (466)
..|+|.|+|||||||+++.|+..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 358899999999999999999998753
No 195
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.49 E-value=0.00094 Score=64.15 Aligned_cols=30 Identities=37% Similarity=0.559 Sum_probs=26.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
..|.|+|+||+||||+++.|+..+|.+|+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 369999999999999999999999887654
No 196
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.49 E-value=0.00098 Score=60.78 Aligned_cols=28 Identities=36% Similarity=0.593 Sum_probs=24.9
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
.+.|.|++|||||++++.|+..+|.+|+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~ 31 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYL 31 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 5889999999999999999999887653
No 197
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.49 E-value=0.00099 Score=63.37 Aligned_cols=27 Identities=44% Similarity=0.712 Sum_probs=24.4
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcc
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDY 415 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~ 415 (466)
.+.|.||||||||++++.|+..+|..|
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 588999999999999999999987654
No 198
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.48 E-value=0.0032 Score=64.58 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.5
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..++|+||||||||+|++.|+-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 35889999999999999977643
No 199
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.48 E-value=0.00078 Score=67.17 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=26.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
..++|+||||||||+++..|+..++..++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 3689999999999999999999997665544
No 200
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.47 E-value=0.00081 Score=67.18 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=40.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCC--cchhhcCCCc---c---c---chhHHHHHHHHHHhhhhhccCceEEEecccc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGL--DYAMMTGGDV---A---P---LGAQAVTKIHEIFDWAKKSKKGLLLFIDEAD 456 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~--~~~~v~~~~l---~---~---~~~e~~~~l~~lf~~A~~~~~~~iLflDEid 456 (466)
..++|+||+|+||||+.++|+..... -.+.+.+.+. . . +........+..+..+-..+ +.+|+|||+-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~-p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMR-PDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSC-CSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhC-CCEEEEcCCC
Confidence 35999999999999999999988732 2233333211 0 0 00001112233333333333 7899999976
Q ss_pred c
Q 012305 457 A 457 (466)
Q Consensus 457 ~ 457 (466)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 4
No 201
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.45 E-value=0.0011 Score=62.70 Aligned_cols=27 Identities=41% Similarity=0.758 Sum_probs=23.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLD 414 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~ 414 (466)
..++|.||||+||||+++.|+..+|..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 468999999999999999999888654
No 202
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.44 E-value=0.0012 Score=67.11 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..++|+||+|+||||+.++|+..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999998876
No 203
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.40 E-value=0.0013 Score=60.32 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=22.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|.||+||||||+++.|+..+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999988
No 204
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.40 E-value=0.00098 Score=63.50 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=24.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDY 415 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~ 415 (466)
..|.|.|+|||||||+++.|+..+|.++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 3588999999999999999999998764
No 205
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.40 E-value=0.0022 Score=63.35 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.5
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..++|+||||+|||+++..++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999865
No 206
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.40 E-value=0.0013 Score=60.89 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=40.0
Q ss_pred cccccCCCCCCch-HHHHHHHHhh--CCcchhhcCC---C----ccc-chhH----HHHHHHHHHhhhhhccCceEEEec
Q 012305 389 NMLFYGPPGTGKT-MVAREIARKS--GLDYAMMTGG---D----VAP-LGAQ----AVTKIHEIFDWAKKSKKGLLLFID 453 (466)
Q Consensus 389 ~vLl~GppGTGKT-~lA~alA~~l--~~~~~~v~~~---~----l~~-~~~e----~~~~l~~lf~~A~~~~~~~iLflD 453 (466)
-+++|||.|+||| .|.+++.+.. +..++.++.. . +.. .|.. .......+++.. +..++|+||
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~---~~~DvIlID 98 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA---LGVAVIGID 98 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH---HTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhc---cCCCEEEEE
Confidence 4778999999999 8889887765 6666666422 1 111 0000 011112233322 236899999
Q ss_pred ccccc
Q 012305 454 EADAF 458 (466)
Q Consensus 454 Eid~l 458 (466)
|+.-|
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99887
No 207
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.39 E-value=0.0034 Score=78.56 Aligned_cols=63 Identities=22% Similarity=0.230 Sum_probs=48.7
Q ss_pred ccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcccchhHHHHHHHHHHhhhhhccCceEEEeccccccc
Q 012305 390 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFL 459 (466)
Q Consensus 390 vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~~~~e~~~~l~~lf~~A~~~~~~~iLflDEid~l~ 459 (466)
..++||+|||||.+++.||+.+|.+++.++|++-..+. .+..+|..+-.. |....+||++.+-
T Consensus 607 g~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~-----~~g~i~~G~~~~--GaW~cfDEfNrl~ 669 (3245)
T 3vkg_A 607 GNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQ-----AMSRIFVGLCQC--GAWGCFDEFNRLE 669 (3245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHH-----HHHHHHHHHHHH--TCEEEEETTTSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHH-----HHHHHHhhHhhc--CcEEEehhhhcCC
Confidence 56789999999999999999999999999998744322 234455544432 6788999998864
No 208
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.33 E-value=0.0015 Score=60.10 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=23.5
Q ss_pred ccccccccCCCCCCchHHHHHHHHhhC
Q 012305 386 PFRNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 386 p~~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
+...++|+||||+||||+++.|+..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345689999999999999999998874
No 209
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.32 E-value=0.0061 Score=60.79 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.4
Q ss_pred cccccccCCCCCCchHHHHHHHHhh
Q 012305 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA~alA~~l 411 (466)
+..+.|+||+|+||||+++.|+..+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999876
No 210
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0037 Score=55.98 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..|+|+|++|+|||+|...|....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999997653
No 211
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.29 E-value=0.0045 Score=64.17 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=47.4
Q ss_pred ccccccccCCCCCCchHHHHHHHHhh----CCcchhhcCCCcccch---------------------hHHHHHHHHHHhh
Q 012305 386 PFRNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTGGDVAPLG---------------------AQAVTKIHEIFDW 440 (466)
Q Consensus 386 p~~~vLl~GppGTGKT~lA~alA~~l----~~~~~~v~~~~l~~~~---------------------~e~~~~l~~lf~~ 440 (466)
+++.++|+|++|+||||++..||..+ |..++.++++...+.. .+....+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678899999999999999998766 6777777776432210 0111222444554
Q ss_pred hhhccCceEEEeccccccc
Q 012305 441 AKKSKKGLLLFIDEADAFL 459 (466)
Q Consensus 441 A~~~~~~~iLflDEid~l~ 459 (466)
+.. ..++++|||-...+.
T Consensus 179 ~~~-~~~D~VIIDTpG~l~ 196 (433)
T 2xxa_A 179 AKL-KFYDVLLVDTAGRLH 196 (433)
T ss_dssp HHH-TTCSEEEEECCCCCT
T ss_pred HHh-CCCCEEEEECCCccc
Confidence 442 237899999876543
No 212
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.29 E-value=0.0014 Score=60.35 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=25.4
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
.|.|+|++||||||+++.|+..+|.+++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 47899999999999999999988877644
No 213
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.25 E-value=0.0017 Score=62.00 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.0
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcc
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDY 415 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~ 415 (466)
.+.|.||+||||||+++.|+..+|..+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 588999999999999999998887653
No 214
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.22 E-value=0.0015 Score=59.37 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=24.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
..|.|+|++||||||+++.|+.. |.+|+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 35889999999999999999998 76654
No 215
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.20 E-value=0.0046 Score=71.06 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=36.4
Q ss_pred CCCeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHh
Q 012305 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 357 l~~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~ 410 (466)
...+||.+.....|...+.... ...+.|.|+|++|+|||+||..+++.
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLN------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTT------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CceeccHHHHHHHHHHHHhhcc------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 4568999998888887653221 12345889999999999999998765
No 216
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.18 E-value=0.0081 Score=60.31 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=25.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhcC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~ 420 (466)
..|.|+|+||+|||+++..|+..+ |..+..+.+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 368899999999999999998776 555544443
No 217
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.17 E-value=0.0046 Score=60.76 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=44.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCccc---------------------chhHHHHHHHHHHhhhhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAP---------------------LGAQAVTKIHEIFDWAKK 443 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~---------------------~~~e~~~~l~~lf~~A~~ 443 (466)
..++|+|++|+|||+++..|+..+ |..++.+++....+ .+......+...+..++.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~ 178 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS 178 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 457889999999999999998776 56666555542211 001111222344554432
Q ss_pred ccCceEEEeccccccc
Q 012305 444 SKKGLLLFIDEADAFL 459 (466)
Q Consensus 444 ~~~~~iLflDEid~l~ 459 (466)
..+++||||-...+.
T Consensus 179 -~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 179 -EKMEIIIVDTAGRHG 193 (297)
T ss_dssp -TTCSEEEEECCCSCC
T ss_pred -CCCCEEEEeCCCCcc
Confidence 237899999877654
No 218
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.16 E-value=0.0018 Score=58.51 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.6
Q ss_pred cccccCCCCCCchHHHHHHHHhhCC
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGL 413 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~ 413 (466)
.++|+||||+||||+++.|+..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986643
No 219
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.15 E-value=0.0019 Score=59.72 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
.-+.|+||+|+||||+++.|+..++
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999998874
No 220
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.14 E-value=0.0021 Score=59.38 Aligned_cols=28 Identities=29% Similarity=0.606 Sum_probs=24.9
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
.+.|+|+||||||++++.|+..+|.+|+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~ 32 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYV 32 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 5889999999999999999999887653
No 221
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.14 E-value=0.0015 Score=60.22 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=40.7
Q ss_pred cccccCCCCCCchHHHHHHHHhh---CCcchhhcCC--C------cc-cchhH----HHHHHHHHHhhhhhccCceEEEe
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG--D------VA-PLGAQ----AVTKIHEIFDWAKKSKKGLLLFI 452 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~--~------l~-~~~~e----~~~~l~~lf~~A~~~~~~~iLfl 452 (466)
-+++|||+|+|||+.+-.++..+ |..++.+... + +. ..+.. .......+++.+. ...++|+|
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~--~~~dvViI 87 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE--EDTEVIAI 87 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC--TTCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh--ccCCEEEE
Confidence 47789999999999888887666 6665555311 0 00 01100 0111124444443 23689999
Q ss_pred ccccccc
Q 012305 453 DEADAFL 459 (466)
Q Consensus 453 DEid~l~ 459 (466)
||+..|.
T Consensus 88 DEaqfl~ 94 (191)
T 1xx6_A 88 DEVQFFD 94 (191)
T ss_dssp CSGGGSC
T ss_pred ECCCCCC
Confidence 9998864
No 222
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.12 E-value=0.0023 Score=58.71 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.|+|+||+|+|||+|++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998765
No 223
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.11 E-value=0.0022 Score=60.33 Aligned_cols=28 Identities=36% Similarity=0.642 Sum_probs=24.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDY 415 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~ 415 (466)
..+.|.|++|||||++++.|+..+|.++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~ 44 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTY 44 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCce
Confidence 4688999999999999999999887654
No 224
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.11 E-value=0.002 Score=58.61 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|+||||+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 358899999999999999999877
No 225
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.10 E-value=0.0053 Score=63.82 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=25.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhh----CCcchhhcC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 420 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l----~~~~~~v~~ 420 (466)
.-++|+|+||+|||+|+..++... |.+++.++.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 358899999999999999997654 445555443
No 226
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.07 E-value=0.0021 Score=59.47 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=24.3
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
.|.|.|++|+||||+++.|+. +|.+++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 588999999999999999998 8776553
No 227
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.06 E-value=0.0024 Score=57.47 Aligned_cols=25 Identities=16% Similarity=0.482 Sum_probs=21.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
+-+.|+||+|+||||+++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3488999999999999999998763
No 228
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.06 E-value=0.0016 Score=65.26 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=24.7
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
.|+|.||+|||||+|+..||..++..++
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiI 69 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVI 69 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEE
Confidence 5889999999999999999999976543
No 229
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.05 E-value=0.0019 Score=62.82 Aligned_cols=29 Identities=38% Similarity=0.561 Sum_probs=24.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhh-CCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS-GLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l-~~~~~ 416 (466)
..|+|.|+||+||||+++.|+..+ |..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 358899999999999999999864 65544
No 230
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.04 E-value=0.0044 Score=57.05 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=22.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
..+.|.||+|+|||||++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999998874
No 231
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.03 E-value=0.0018 Score=59.48 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=23.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhh-CCcc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS-GLDY 415 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l-~~~~ 415 (466)
..+.|+||||+||||+++.|+..+ +..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 357899999999999999999986 4443
No 232
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.01 E-value=0.0024 Score=58.12 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.0
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
-+.|+||+|+||||+++.|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999999875
No 233
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.92 E-value=0.0048 Score=56.51 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|+||+|+||||+++.|+..+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999876
No 234
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.91 E-value=0.0021 Score=58.66 Aligned_cols=23 Identities=43% Similarity=0.652 Sum_probs=19.3
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
+++++++|||+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999988777654
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.90 E-value=0.003 Score=57.98 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=21.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
+.+.|+||+|+||||+++.|...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999998865
No 236
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.89 E-value=0.008 Score=58.93 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=25.1
Q ss_pred cccccccCCCCCCchHHHHHHHHhh---CCcchhhc
Q 012305 387 FRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~ 419 (466)
...+.|+|++|+||||++..||..+ +..+..+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3467788999999999999998776 44444433
No 237
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.87 E-value=0.0031 Score=57.07 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.2
Q ss_pred cccccCCCCCCchHHHHHHHHhhC
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
-+.|.||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998763
No 238
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.85 E-value=0.0029 Score=62.67 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=24.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
.-++|+||||+|||+|+..|+..++..++
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~ii 39 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELI 39 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEE
Confidence 35788999999999999999999875443
No 239
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.83 E-value=0.0031 Score=64.94 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=24.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
.-|+|+|+||+||||+++.|+..+++.++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 45889999999999999999998876544
No 240
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.81 E-value=0.009 Score=61.59 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=22.0
Q ss_pred cccccCCCCCCchHHHHHHHHhhC
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
.++|+||+|+||||+.+++...+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 589999999999999999998874
No 241
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.78 E-value=0.0078 Score=62.31 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=25.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhh----CCcchhhcC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 420 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l----~~~~~~v~~ 420 (466)
.-++|+|+||+|||+|+..++... |.+++.++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 358899999999999999987654 445555443
No 242
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.77 E-value=0.003 Score=61.41 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=24.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
..|.|+|+|||||||+++.|+ .+|.+++.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 358899999999999999999 57776543
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.77 E-value=0.0092 Score=61.63 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=27.9
Q ss_pred ccccccccCCCCCCchHHHHHHHHhh---CCcchhhcCC
Q 012305 386 PFRNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG 421 (466)
Q Consensus 386 p~~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~ 421 (466)
++..++|+||+|+||||++..||..+ |..+..+.++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 34568889999999999999999877 5555555543
No 244
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.74 E-value=0.0035 Score=57.90 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=26.0
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcch
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYA 416 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~ 416 (466)
.|.|.||+|||||++++.||..+|++|+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 4789999999999999999999999876
No 245
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.71 E-value=0.0031 Score=57.80 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
..+.|.||+|+||||+++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999999876
No 246
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.70 E-value=0.0033 Score=66.59 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=22.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
.+++|+||+|+||||+.++|+..+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3599999999999999999998873
No 247
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.69 E-value=0.0042 Score=57.27 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
..++|.|+||+||||+++.|+..++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999998764
No 248
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.64 E-value=0.0035 Score=62.88 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.4
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCc
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLD 414 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~ 414 (466)
.|+|.||||+|||+++..|+..++..
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~ 34 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGE 34 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCc
Confidence 58899999999999999999998743
No 249
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.59 E-value=0.0077 Score=56.39 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=39.3
Q ss_pred ccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccchh-HHH------------HHHHHHHhhhhhccCceEEEec
Q 012305 390 MLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGA-QAV------------TKIHEIFDWAKKSKKGLLLFID 453 (466)
Q Consensus 390 vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~~-e~~------------~~l~~lf~~A~~~~~~~iLflD 453 (466)
.++|||.|+|||+.+-.++... |..++.+...--..++. ... .....+++.+. .+.++|+||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~--~~~dvViID 108 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT--EEMDVIAID 108 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCC--SSCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHh--cCCCEEEEE
Confidence 5689999999999887776665 66666654211000110 000 11123444443 237899999
Q ss_pred cccccc
Q 012305 454 EADAFL 459 (466)
Q Consensus 454 Eid~l~ 459 (466)
|+.-|.
T Consensus 109 EaQF~~ 114 (214)
T 2j9r_A 109 EVQFFD 114 (214)
T ss_dssp CGGGSC
T ss_pred CcccCC
Confidence 998764
No 250
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.59 E-value=0.013 Score=62.15 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=32.4
Q ss_pred eeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHH
Q 012305 361 ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 361 Vg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~ 409 (466)
+|.+.....|...+..-. ....+.|.|+|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~-----~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-----DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-----CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 488877777776553211 11235688999999999999999996
No 251
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.54 E-value=0.0037 Score=62.03 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.0
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCc
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLD 414 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~ 414 (466)
-|+|.||||||||+++..|+..++..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~ 30 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGE 30 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccc
Confidence 47889999999999999999988653
No 252
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.51 E-value=0.0057 Score=56.58 Aligned_cols=25 Identities=12% Similarity=0.503 Sum_probs=22.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
+-++|+||+|+|||+|++.|.....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998764
No 253
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.44 E-value=0.0056 Score=58.00 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=25.3
Q ss_pred ccccCCCCCCchHHHHHHHHhhCCcchhh
Q 012305 390 MLFYGPPGTGKTMVAREIARKSGLDYAMM 418 (466)
Q Consensus 390 vLl~GppGTGKT~lA~alA~~l~~~~~~v 418 (466)
+-|.||||+||||+++.|+..+|.+++.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 67899999999999999999998776543
No 254
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.41 E-value=0.0049 Score=63.16 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=24.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCCcc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGLDY 415 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~~~ 415 (466)
..|+|.||||+|||+|+..|+..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~i 30 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEV 30 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeE
Confidence 3578999999999999999999987554
No 255
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.40 E-value=0.0049 Score=55.06 Aligned_cols=18 Identities=28% Similarity=0.636 Sum_probs=16.4
Q ss_pred cccccCCCCCCchHHHHH
Q 012305 389 NMLFYGPPGTGKTMVARE 406 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~a 406 (466)
-+.|+||+|+||||+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488999999999999994
No 256
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.37 E-value=0.0053 Score=57.37 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=19.1
Q ss_pred ccccccCCCCCCchHHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREIA 408 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA 408 (466)
..++|+||+|+|||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 358899999999999999998
No 257
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.35 E-value=0.0068 Score=61.15 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
..++|+||+|+||||+.++|+....
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3699999999999999999998873
No 258
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.35 E-value=0.014 Score=53.25 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+|+|+|++|+|||+|+..|....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998754
No 259
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.30 E-value=0.0068 Score=56.45 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=21.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|+||+|+|||||++.|+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348899999999999999999876
No 260
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.30 E-value=0.006 Score=66.25 Aligned_cols=22 Identities=45% Similarity=0.739 Sum_probs=17.0
Q ss_pred ccccCCCCCCchHHHHHHHHhh
Q 012305 390 MLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 390 vLl~GppGTGKT~lA~alA~~l 411 (466)
.||.||||||||+++-.+...+
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999998765554433
No 261
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.29 E-value=0.0057 Score=56.76 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
+.|+|.||||+|||++|..|+...+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4699999999999999999998763
No 262
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.28 E-value=0.012 Score=57.67 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=22.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
.-|.|.||+|+||||+++.|+..++
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999988874
No 263
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.26 E-value=0.0065 Score=55.83 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.1
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+||||+++.|+..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999876
No 264
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.26 E-value=0.0099 Score=62.00 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=22.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
..|+|+|.||+|||++++.|+..++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999999999874
No 265
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.25 E-value=0.0088 Score=55.74 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=24.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhh----CCcchhhcC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS----GLDYAMMTG 420 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l----~~~~~~v~~ 420 (466)
..++|+|+||+|||+||..++.+. +.+++.++.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 358899999999999998876442 555555443
No 266
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.25 E-value=0.015 Score=59.39 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=21.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..++|+||||||||++++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 369999999999999999998865
No 267
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.23 E-value=0.0071 Score=57.18 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.9
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCc
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLD 414 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~ 414 (466)
-+.|.||+|+||||+++.|+..+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 47799999999999999999987743
No 268
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.20 E-value=0.014 Score=60.83 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.5
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.++|+||||||||+|+..|+...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58999999999999999987665
No 269
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.19 E-value=0.004 Score=60.95 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=18.6
Q ss_pred cccccCCCCCCchHHHHHHHHhhC
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
-|.|.||+|+||||+++.|+..++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 377999999999999999998775
No 270
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.18 E-value=0.0031 Score=57.69 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=21.3
Q ss_pred ccccCCCCCCchHHHHHHHHhhC
Q 012305 390 MLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 390 vLl~GppGTGKT~lA~alA~~l~ 412 (466)
|.|.|++|+||||+++.|+..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999883
No 271
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.15 E-value=0.0077 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.4
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||.|+|||||.+.|+..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999999987
No 272
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.14 E-value=0.015 Score=58.14 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=25.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhcC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~ 420 (466)
.-++|.|+||+|||+|+..++... |.+++.++.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 358899999999999999997764 555555543
No 273
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.10 E-value=0.013 Score=54.03 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=14.5
Q ss_pred ccccccCCCCCCchHH
Q 012305 388 RNMLFYGPPGTGKTMV 403 (466)
Q Consensus 388 ~~vLl~GppGTGKT~l 403 (466)
+++++++|||+|||..
T Consensus 52 ~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 4699999999999986
No 274
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.07 E-value=0.014 Score=57.55 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.2
Q ss_pred cccccccCCCCCCchHHHHHHHHhh
Q 012305 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA~alA~~l 411 (466)
...++|+||+|+||||+++.|+..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999876
No 275
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.03 E-value=0.014 Score=58.92 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.4
Q ss_pred cccccccCCCCCCchHHHHHHHHhh
Q 012305 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA~alA~~l 411 (466)
...++|+||+|+||||+++.|+..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3568899999999999999999876
No 276
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.03 E-value=0.0089 Score=56.27 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=22.2
Q ss_pred cccccCCCCCCchHHHHHHHHhhC
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
-|+|.||||+||||+++.|+..++
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999986
No 277
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.02 E-value=0.018 Score=57.46 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.8
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||||+|||||.+.|+..+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58899999999999999998765
No 278
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.01 E-value=0.0083 Score=58.21 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.8
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.++|+||||+|||+|++.|+..+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998765
No 279
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.00 E-value=0.014 Score=57.76 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|.||+|+|||||++.|+..+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhc
Confidence 457799999999999999999876
No 280
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.00 E-value=0.032 Score=70.06 Aligned_cols=91 Identities=16% Similarity=0.285 Sum_probs=64.0
Q ss_pred CeeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHhhCCcchhhcCCCcccchhHHHHHHHHHH
Q 012305 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHEIF 438 (466)
Q Consensus 359 ~vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~~l~~~~~e~~~~l~~lf 438 (466)
++|.-.++.+.|..+.+.+.. |..|+||+|..|+||+++++..|...|+.++.+....- +...+-...++.++
T Consensus 1624 ~LVlF~daleHv~RI~RIL~q------p~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~-Y~~~~f~eDLk~l~ 1696 (3245)
T 3vkg_A 1624 PLVLFNEVLDHILRIDRVFRQ------PQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNN-YKSSDFDDDLRMLL 1696 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHHTS------TTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC-----CCHHHHHHHHHHHH
T ss_pred eEEeHHHHHHHHHHHHHHHcc------CCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCC-CCHHHHHHHHHHHH
Confidence 455666666666666555543 44579999999999999999999999999888765431 22233345688888
Q ss_pred hhhhhccCceEEEecccc
Q 012305 439 DWAKKSKKGLLLFIDEAD 456 (466)
Q Consensus 439 ~~A~~~~~~~iLflDEid 456 (466)
..|-..+.+.+++|+|-.
T Consensus 1697 ~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1697 KRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp HHHHTSCCCEEEEEEGGG
T ss_pred HHHhcCCCCEEEEEeccc
Confidence 888666667888887754
No 281
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.99 E-value=0.016 Score=55.65 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+|.|.|+||+|||+|...|....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999997653
No 282
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.97 E-value=0.017 Score=55.13 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+|+|.|++|+|||+|..+|...-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999997643
No 283
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.95 E-value=0.0065 Score=56.75 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=14.8
Q ss_pred cccccCCCCCCchHHHHHHH-Hhh
Q 012305 389 NMLFYGPPGTGKTMVAREIA-RKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA-~~l 411 (466)
-+.|+||+|+||||+++.|+ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 47899999999999999999 765
No 284
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.94 E-value=0.017 Score=52.34 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.2
Q ss_pred ccccccCCCCCCchHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAR 405 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~ 405 (466)
+++++.+|||+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 469999999999997544
No 285
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.93 E-value=0.0084 Score=64.86 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~ 419 (466)
..|+|+|+||+||||+++.|+..+ |.+++.++
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 468999999999999999999998 88776654
No 286
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.92 E-value=0.043 Score=62.63 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=33.4
Q ss_pred eeeCcchHHHHHHHHHhhccccccccccccccccCCCCCCchHHHHHHHHh
Q 012305 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 360 vVg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLl~GppGTGKT~lA~alA~~ 410 (466)
.||.+.....|...+.... +.+.+.|+||+|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-------~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-------PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-------SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-------CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 3788888888877654311 1346889999999999999999853
No 287
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.91 E-value=0.0089 Score=56.27 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=25.7
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
.|.|.|++|||||++++.||..+|.+|+-
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 47789999999999999999999887643
No 288
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.89 E-value=0.017 Score=54.18 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.2
Q ss_pred ccccccCCCCCCchHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAR 405 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~ 405 (466)
+++++.+|||+|||+..-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 369999999999998643
No 289
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.88 E-value=0.011 Score=53.30 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=24.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh---CCcchhhc
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~ 419 (466)
.+.|.|++|+|||+++..|+..+ |+.+..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 57899999999999999998876 45555444
No 290
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.84 E-value=0.011 Score=55.38 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=22.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
.-+.|.||+|+|||||.+.|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4588999999999999999988764
No 291
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.83 E-value=0.02 Score=59.05 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=21.5
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCc
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLD 414 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~ 414 (466)
++|++||+|+|||.++-.++...+..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~ 135 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTP 135 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 49999999999999987777666544
No 292
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.78 E-value=0.015 Score=58.99 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=15.9
Q ss_pred ccccccCCCCCCchHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREI 407 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~al 407 (466)
+++++.+|||+|||++.-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 36999999999999954433
No 293
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.77 E-value=0.012 Score=57.95 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.2
Q ss_pred cccccccCCCCCCchHHHHHHHHhh
Q 012305 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA~alA~~l 411 (466)
...+.|+||+||||||+++.|+..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3468899999999999999999876
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.75 E-value=0.012 Score=58.16 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=22.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|+||+|+|||||++.|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 458899999999999999999887
No 295
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.71 E-value=0.019 Score=53.19 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.1
Q ss_pred ccccccCCCCCCchHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAR 405 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~ 405 (466)
+++++.+|+|+|||+..-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 369999999999998543
No 296
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.66 E-value=0.011 Score=57.01 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..++|+||||+|||+|+..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358899999999999999998654
No 297
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.61 E-value=0.018 Score=59.22 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=15.3
Q ss_pred ccccccCCCCCCchHHH
Q 012305 388 RNMLFYGPPGTGKTMVA 404 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA 404 (466)
+++|++||+|+|||+.+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 47999999999999975
No 298
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.57 E-value=0.0079 Score=62.35 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.9
Q ss_pred ccccccCCCCCCchHHHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~ 409 (466)
+-.+++|+||||||+++..++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4578999999999999988765
No 299
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.56 E-value=0.025 Score=52.84 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..|+|+|+||+|||+|...|....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999997643
No 300
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.55 E-value=0.015 Score=54.53 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.8
Q ss_pred ccccccCCCCCCchHHH
Q 012305 388 RNMLFYGPPGTGKTMVA 404 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA 404 (466)
+++++++|||+|||+..
T Consensus 68 ~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATF 84 (237)
T ss_dssp CCEEECCCSSHHHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999864
No 301
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.54 E-value=0.023 Score=53.84 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.3
Q ss_pred ccccccCCCCCCchHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAR 405 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~ 405 (466)
+++++.+|+|+|||+..-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 469999999999998643
No 302
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.51 E-value=0.026 Score=53.88 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.3
Q ss_pred ccccccCCCCCCchHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAR 405 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~ 405 (466)
+++|+.+|+|+|||+.+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999998643
No 303
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.47 E-value=0.018 Score=55.43 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=18.1
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
+.|+++|+|+|||.++-.++..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~ 151 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARY 151 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHH
Confidence 4678999999999998776654
No 304
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.47 E-value=0.023 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.2
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
-|.|.|++|+||||+++.|+..+
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999888
No 305
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.45 E-value=0.05 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..|.|+|+||+|||||...|...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998754
No 306
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.44 E-value=0.018 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|++.|++|+|||+|...|...
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999754
No 307
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.42 E-value=0.02 Score=55.91 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.4
Q ss_pred cccccccCCCCCCchHHH
Q 012305 387 FRNMLFYGPPGTGKTMVA 404 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA 404 (466)
.+++++++|+|||||+..
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 367999999999999753
No 308
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.41 E-value=0.011 Score=62.74 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=22.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGL 413 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~ 413 (466)
..|+|+|.||+|||++++.|+..++.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35889999999999999999998843
No 309
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.38 E-value=0.034 Score=49.52 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=20.4
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|+|++|+|||+|...|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999754
No 310
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.31 E-value=0.016 Score=53.88 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.9
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.+.|.||+|+|||||.+.|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 311
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.29 E-value=0.028 Score=55.07 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=17.4
Q ss_pred ccccccCCCCCCchHHHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~ 409 (466)
+++++.+|||+|||+.+-..+-
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHH
Confidence 3699999999999997655443
No 312
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.28 E-value=0.031 Score=51.27 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=17.0
Q ss_pred ccccccCCCCCCchHHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREIA 408 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA 408 (466)
+++++.+|+|+|||..+-..+
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHH
Confidence 469999999999998665544
No 313
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.26 E-value=0.025 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=18.0
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
-|.|.||+|+||||+++.|+..+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999999887
No 314
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.26 E-value=0.017 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.2
Q ss_pred cccccCCCCCCchHHHHHHHHhhC
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
-.+|+||+|+|||++..+|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999987664
No 315
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.25 E-value=0.032 Score=55.29 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=16.4
Q ss_pred ccccccCCCCCCchHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREI 407 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~al 407 (466)
+++++.+|||+|||+.+-..
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 57999999999999865433
No 316
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.25 E-value=0.014 Score=57.38 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.6
Q ss_pred cccccCCCCCCchHHHHHHHHhhC
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
.+.|.||+|+|||||++.|+..++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 477999999999999999998765
No 317
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.25 E-value=0.012 Score=53.73 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=25.7
Q ss_pred ccccCCCCCCchHHHHHHHHhhCCcchhhcCC
Q 012305 390 MLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421 (466)
Q Consensus 390 vLl~GppGTGKT~lA~alA~~l~~~~~~v~~~ 421 (466)
+|++|++|+|||++|..++.. +.+++++.-+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999999999987 7776655543
No 318
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.23 E-value=0.036 Score=55.06 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.5
Q ss_pred cccccCCCCCCchHHHHHHHHhhC
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
-+.|.||+||||||+++.|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 477899999999999999998874
No 319
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.22 E-value=0.033 Score=62.99 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.2
Q ss_pred ccccccCCCCCCchHHHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~ 409 (466)
..++|+||+|+||||+.+.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999943
No 320
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.21 E-value=0.064 Score=59.53 Aligned_cols=21 Identities=43% Similarity=0.536 Sum_probs=17.3
Q ss_pred ccccccCCCCCCchHHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREIA 408 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA 408 (466)
.++|+.||+|+|||.++-..+
T Consensus 390 ~~~Ll~a~TGSGKTlvall~i 410 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAI 410 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999765543
No 321
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.20 E-value=0.039 Score=60.34 Aligned_cols=19 Identities=37% Similarity=0.749 Sum_probs=16.4
Q ss_pred ccccccCCCCCCchHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVARE 406 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~a 406 (466)
.+++++||||+|||+.+-.
T Consensus 47 ~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHH
Confidence 4799999999999998743
No 322
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.18 E-value=0.027 Score=61.69 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=15.5
Q ss_pred ccccccCCCCCCchHHH
Q 012305 388 RNMLFYGPPGTGKTMVA 404 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA 404 (466)
.+++++||||+|||+.+
T Consensus 40 ~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 40 KNALISIPTASGKTLIA 56 (720)
T ss_dssp CEEEEECCGGGCHHHHH
T ss_pred CcEEEEcCCccHHHHHH
Confidence 47999999999999877
No 323
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.12 E-value=0.036 Score=58.53 Aligned_cols=26 Identities=0% Similarity=-0.092 Sum_probs=23.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGL 413 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~ 413 (466)
..|+|.|++||||||++++|+..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999975
No 324
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.03 E-value=0.017 Score=55.76 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=21.0
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
++.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998765
No 325
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.98 E-value=0.04 Score=54.94 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|+|+||+|||+++..|+..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458899999999999999998765
No 326
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.97 E-value=0.02 Score=51.68 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.3
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.++|.||+|+|||+|.+.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 327
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.96 E-value=0.051 Score=56.14 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.6
Q ss_pred cccccccCCCCCCchHHH
Q 012305 387 FRNMLFYGPPGTGKTMVA 404 (466)
Q Consensus 387 ~~~vLl~GppGTGKT~lA 404 (466)
.+++|++||+|+|||+..
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 357999999999999874
No 328
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.93 E-value=0.021 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=20.4
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.|++.|++|+|||+|+..+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999997653
No 329
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.90 E-value=0.062 Score=49.27 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=24.5
Q ss_pred ccccCCCCCCchHHHHHHHHhh---CCcchhhc
Q 012305 390 MLFYGPPGTGKTMVAREIARKS---GLDYAMMT 419 (466)
Q Consensus 390 vLl~GppGTGKT~lA~alA~~l---~~~~~~v~ 419 (466)
|.|-|+-||||||.++.|+..+ |.+++.+.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5677999999999999999888 66665544
No 330
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.89 E-value=0.0099 Score=56.73 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=23.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhh-CCcc
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS-GLDY 415 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l-~~~~ 415 (466)
..|+|.|++|+||||+++.|+..+ +..+
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 458899999999999999999998 4433
No 331
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.89 E-value=0.023 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
-++|.||+|+|||+++..|...+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 58899999999999999998765
No 332
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.87 E-value=0.014 Score=57.88 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=41.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CC-c--chhhcCCCcccchhHHHHHHHHHHhhhhh---ccCceEEEeccccc-
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GL-D--YAMMTGGDVAPLGAQAVTKIHEIFDWAKK---SKKGLLLFIDEADA- 457 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~-~--~~~v~~~~l~~~~~e~~~~l~~lf~~A~~---~~~~~iLflDEid~- 457 (466)
..+|||||+|+||++.+..|+..+ +. + ++.+++ ...++.+++.+.. .+.+.||+|||++.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP----------NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT----------TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC----------CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 369999999999999999998865 21 2 122221 1223344444332 33467999999998
Q ss_pred cccc
Q 012305 458 FLCD 461 (466)
Q Consensus 458 l~~~ 461 (466)
|..+
T Consensus 89 l~~~ 92 (343)
T 1jr3_D 89 PNAA 92 (343)
T ss_dssp CCTT
T ss_pred CChH
Confidence 7543
No 333
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.86 E-value=0.019 Score=54.48 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|.||+|+|||||.+.|+...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999876
No 334
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.85 E-value=0.026 Score=63.68 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.9
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..++|+||+|+||||+.+.++..
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHH
Confidence 45889999999999999998743
No 335
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.85 E-value=0.039 Score=52.23 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=36.0
Q ss_pred cccccCCCCCCchHHHHHHHHhh---CCcchhhcCCCcccchhHHHH------------HHHHHHhhhhhccCceEEEec
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLGAQAVT------------KIHEIFDWAKKSKKGLLLFID 453 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~~e~~~------------~l~~lf~~A~~~~~~~iLflD 453 (466)
-.++|||.|+|||+.+-.++... |..++.+...--..++....+ ....+++.+ ...++|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~---~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA---LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHH---TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHh---ccCCEEEEE
Confidence 36779999999997665554443 555554431100001100001 112233433 337899999
Q ss_pred cccccc
Q 012305 454 EADAFL 459 (466)
Q Consensus 454 Eid~l~ 459 (466)
|+.-|.
T Consensus 98 EaQF~~ 103 (234)
T 2orv_A 98 EGQFFP 103 (234)
T ss_dssp SGGGCT
T ss_pred chhhhh
Confidence 998774
No 336
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.85 E-value=0.016 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999998765
No 337
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.83 E-value=0.022 Score=61.66 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=18.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+|+.||||||||+++..+...+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999877775543
No 338
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.82 E-value=0.026 Score=55.61 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=25.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhcC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTG 420 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~ 420 (466)
.-++|.|+||+|||+|+..++... |.+++.++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 358899999999999999998665 445555543
No 339
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.81 E-value=0.041 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.0
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+|.|+||||||+|...|...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999765
No 340
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.76 E-value=0.016 Score=54.37 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.7
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998765
No 341
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=93.76 E-value=0.014 Score=63.89 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.2
Q ss_pred ccccccCCCCCCchHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAR 405 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~ 405 (466)
+++|++||||+|||+.+-
T Consensus 156 k~vlv~apTGSGKT~~al 173 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAI 173 (677)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 469999999999999543
No 342
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.72 E-value=0.022 Score=51.28 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.6
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.++|.||+|+|||+|.+.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998754
No 343
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.72 E-value=0.024 Score=48.79 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.4
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.|+|.|++|+|||+|+..+....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999997643
No 344
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.71 E-value=0.069 Score=56.99 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
.|+|+.|.||+|||++++.|...+
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999876544
No 345
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.69 E-value=0.026 Score=48.43 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.5
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
.+|+|.|++|+|||+|...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999764
No 346
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.66 E-value=0.026 Score=48.40 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.9
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+|.|+||+|||+|...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999998754
No 347
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.66 E-value=0.05 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.1
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
+|+|.|+||+|||+|..+|...
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999764
No 348
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=93.66 E-value=0.053 Score=61.87 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.6
Q ss_pred ccccccCCCCCCchHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVARE 406 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~a 406 (466)
+++|++||||+|||+++..
T Consensus 55 ~~vlv~apTGsGKTlv~~~ 73 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEY 73 (997)
T ss_dssp CEEEEECCTTSCSHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHH
Confidence 3699999999999986443
No 349
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.61 E-value=0.019 Score=54.35 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|+||+|+|||||.+.|+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998875
No 350
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.61 E-value=0.025 Score=61.03 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=19.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
+.++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 359999999999999988776554
No 351
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.60 E-value=0.024 Score=53.19 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=21.7
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.|+|.|++|+||||+++.|+..+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999998
No 352
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.60 E-value=0.046 Score=54.60 Aligned_cols=20 Identities=35% Similarity=0.326 Sum_probs=16.1
Q ss_pred ccccccCCCCCCchHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREI 407 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~al 407 (466)
+++++.+|||+|||+.+-..
T Consensus 59 ~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHH
Confidence 36999999999999865443
No 353
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.57 E-value=0.05 Score=54.45 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=15.6
Q ss_pred ccccccCCCCCCchHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVARE 406 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~a 406 (466)
+++++.+|+|+|||+.+-.
T Consensus 78 ~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCEEECCCSCSSSHHHHHH
T ss_pred CCEEEECCCCCcccHHHHH
Confidence 3699999999999987433
No 354
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.036 Score=63.91 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=16.7
Q ss_pred ccccccCCCCCCchHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREI 407 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~al 407 (466)
+++|++||||+|||+++-..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~ 219 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYA 219 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHH
Confidence 46999999999999876544
No 355
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.50 E-value=0.025 Score=48.29 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=20.4
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.|++.|++|+|||+|+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999997653
No 356
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.50 E-value=0.02 Score=54.98 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.8
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998765
No 357
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.48 E-value=0.028 Score=48.38 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=20.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
-+|+|.|++|+|||+|...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999997543
No 358
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.48 E-value=0.021 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.8
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998765
No 359
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.45 E-value=0.029 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
-.|+|.|++|+|||+|...+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999997654
No 360
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.44 E-value=0.06 Score=59.90 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.5
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..++|+||+|+||||+.+.|+..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 45889999999999999999865
No 361
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.43 E-value=0.043 Score=51.33 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.8
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcc
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDY 415 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~ 415 (466)
-|.|.|++|+||||+++.|+..++.++
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 478899999999999999999997643
No 362
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.43 E-value=0.026 Score=51.22 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.8
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
++|||.|++|+|||++|..|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 47999999999999999999764
No 363
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.42 E-value=0.03 Score=48.87 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.4
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-+|+|.|+||+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999754
No 364
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.39 E-value=0.023 Score=57.38 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
-+.|.||+|||||||.++|+...
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999876
No 365
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.38 E-value=0.022 Score=54.59 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.7
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 366
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.37 E-value=0.042 Score=51.78 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=26.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhh--CCcchhhcCC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS--GLDYAMMTGG 421 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l--~~~~~~v~~~ 421 (466)
..+++.|.+|+|||+++..|+..+ |..++.+++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 457889999999999999998766 6666666543
No 367
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.37 E-value=0.026 Score=54.39 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.4
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.+.|.||+|+|||||.+.|+..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999986
No 368
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.37 E-value=0.026 Score=56.73 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=22.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGL 413 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~ 413 (466)
..+.|+||+|+|||||++.|+..+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999998743
No 369
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.35 E-value=0.031 Score=48.82 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=20.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..|+|+|++|+|||+|...+....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999987643
No 370
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.33 E-value=0.023 Score=55.21 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.8
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998765
No 371
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.32 E-value=0.026 Score=53.74 Aligned_cols=22 Identities=27% Similarity=0.535 Sum_probs=20.4
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.+.|.||+|+|||||.+.|+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 372
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.32 E-value=0.021 Score=61.26 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=26.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC----CcchhhcC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG----LDYAMMTG 420 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~----~~~~~v~~ 420 (466)
..|+|.|+||+||||+++.|+..++ .+++.+++
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 3588999999999999999999885 56555543
No 373
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.31 E-value=0.03 Score=48.66 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.8
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+|.|+||+|||+|...+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6999999999999999999654
No 374
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.24 E-value=0.024 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.8
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 375
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.24 E-value=0.03 Score=48.36 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.8
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+|.|++|+|||+|...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 376
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.24 E-value=0.024 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|.||+|+|||||.+.|+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998765
No 377
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.23 E-value=0.017 Score=52.04 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=21.2
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|+||+|+||||+++.|+..+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 378
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.22 E-value=0.059 Score=54.44 Aligned_cols=23 Identities=43% Similarity=0.534 Sum_probs=19.2
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
++|+.+|+|+|||+.+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 59999999999999887775443
No 379
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=93.22 E-value=0.067 Score=61.13 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=16.1
Q ss_pred ccccccCCCCCCchHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVARE 406 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~a 406 (466)
+++|+.+|+|+|||+++-.
T Consensus 102 ~~vLV~apTGSGKTlva~l 120 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEY 120 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHH
Confidence 3699999999999997643
No 380
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.20 E-value=0.024 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998775
No 381
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.20 E-value=0.034 Score=48.07 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.5
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|.|++|+|||+|...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999755
No 382
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.19 E-value=0.027 Score=50.16 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=19.4
Q ss_pred cccccCCCCCCchHHHHHHHH
Q 012305 389 NMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~ 409 (466)
.|+|.|+||+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999976
No 383
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.18 E-value=0.031 Score=48.27 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=19.9
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+|.|++|+|||+|...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999763
No 384
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.18 E-value=0.028 Score=57.11 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.0
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|||||||.+.|+...
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999876
No 385
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.17 E-value=0.063 Score=59.47 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.6
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..++|+||+|+||||+.+.++...
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 358899999999999999998643
No 386
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.17 E-value=0.047 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.3
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
.+|+|.|.||+|||+|...|...
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46999999999999999998654
No 387
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.16 E-value=0.069 Score=52.33 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=21.6
Q ss_pred cccccccccCCCCCCchHHHHHHHHh
Q 012305 385 APFRNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 385 ~p~~~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+.-|.|+|.||+|||+|...|...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34456889999999999999999754
No 388
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.15 E-value=0.025 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998766
No 389
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.15 E-value=0.032 Score=48.68 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=19.9
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.++|.|+||+|||+|.+.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999763
No 390
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.13 E-value=0.029 Score=56.52 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|||||||.+.|+...
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999876
No 391
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.12 E-value=0.026 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.292 Sum_probs=21.0
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+..+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998876
No 392
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.10 E-value=0.034 Score=49.36 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=21.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
-.|+|+|++|+|||+|+..|....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999997653
No 393
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.08 E-value=0.036 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.0
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.|+|.|++|+|||+|...+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999997543
No 394
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.08 E-value=0.03 Score=56.55 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|||||||.+.|+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47799999999999999999876
No 395
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.08 E-value=0.036 Score=47.67 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=20.0
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+|.|++|+|||+|...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 396
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.07 E-value=0.036 Score=47.71 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=20.4
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|.|++|+|||+|...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999763
No 397
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.06 E-value=0.041 Score=60.08 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=15.9
Q ss_pred ccccccCCCCCCchHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAR 405 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~ 405 (466)
++++++||||+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp SCEEEECSSHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 469999999999999873
No 398
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.06 E-value=0.036 Score=48.92 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.6
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|+|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999764
No 399
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.06 E-value=0.03 Score=56.49 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|||||||.+.|+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47799999999999999999876
No 400
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.01 E-value=0.027 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.7
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+..+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998765
No 401
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.01 E-value=0.027 Score=54.73 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+..+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998765
No 402
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.00 E-value=0.027 Score=54.48 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+..+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998775
No 403
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.00 E-value=0.027 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998765
No 404
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.97 E-value=0.038 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.3
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|.|+||+|||+|...+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999999999754
No 405
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.95 E-value=0.032 Score=56.54 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|||||||.+.|+...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47799999999999999999876
No 406
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.93 E-value=0.028 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|.||+|+|||||.+.|+...
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 358899999999999999998765
No 407
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.93 E-value=0.037 Score=47.89 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=19.0
Q ss_pred cccccCCCCCCchHHHHHHHH
Q 012305 389 NMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~ 409 (466)
.|+|.|+||+|||+|...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999963
No 408
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.90 E-value=0.035 Score=49.13 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.7
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|.|++|+|||+|.+.|...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999873
No 409
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.87 E-value=0.073 Score=53.39 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.7
Q ss_pred ccccccCCCCCCchHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVARE 406 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~a 406 (466)
+++++.+|+|+|||+..-.
T Consensus 75 ~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHH
Confidence 4699999999999976543
No 410
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.86 E-value=0.033 Score=56.43 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|||||||.+.|+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999999876
No 411
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.85 E-value=0.031 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998765
No 412
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.84 E-value=0.033 Score=48.06 Aligned_cols=21 Identities=38% Similarity=0.743 Sum_probs=18.9
Q ss_pred cccccCCCCCCchHHHHHHHH
Q 012305 389 NMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~ 409 (466)
.|+|.|+||+|||+|.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999853
No 413
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.83 E-value=0.036 Score=48.31 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.7
Q ss_pred ccccccCCCCCCchHHHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~ 409 (466)
-.|+|.|++|+|||+|...|..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999954
No 414
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.82 E-value=0.059 Score=49.22 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.7
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..++|.|++|+|||+++..|+..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998875
No 415
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.82 E-value=0.039 Score=48.21 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.1
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
-.+|+||+|+|||++..+|+--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997655
No 416
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.82 E-value=0.042 Score=51.69 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhhCC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSGL 413 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~~ 413 (466)
.-|.|.|++|+||||+++.|+..++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34788999999999999999987744
No 417
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.81 E-value=0.041 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.1
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..|+|+|++|+|||+|...+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999997654
No 418
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=92.80 E-value=0.08 Score=55.04 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=17.8
Q ss_pred ccccccCCCCCCchHHHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~ 409 (466)
+++|+.+|+|+|||..+-..+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~ 41 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICE 41 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHH
Confidence 3699999999999987665543
No 419
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.80 E-value=0.041 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.3
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|.|++|+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999653
No 420
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.80 E-value=0.03 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.7
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998765
No 421
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.78 E-value=0.073 Score=52.81 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=16.4
Q ss_pred ccccccCCCCCCchHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREI 407 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~al 407 (466)
+++++.+|||+|||+.+-..
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~ 65 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLA 65 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHH
Confidence 46999999999999875443
No 422
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.76 E-value=0.042 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
-.|+|+|++|+|||+|...|....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 369999999999999999997643
No 423
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.76 E-value=0.051 Score=55.85 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.6
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.++|+...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999843
No 424
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.76 E-value=0.026 Score=53.25 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.9
Q ss_pred ccccCCCCCCchHHHHHHHHhhC
Q 012305 390 MLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 390 vLl~GppGTGKT~lA~alA~~l~ 412 (466)
+.|+||+|+|||++.++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 67899999999999999998773
No 425
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.75 E-value=0.038 Score=48.09 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.3
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|+|++|+|||+|...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999754
No 426
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.75 E-value=0.042 Score=48.32 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=20.5
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.|+|.|++|+|||+|...|....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999997643
No 427
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.74 E-value=0.39 Score=51.43 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=15.9
Q ss_pred ccccccCCCCCCchHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREI 407 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~al 407 (466)
+++|+.+|||+|||+.....
T Consensus 60 ~d~lv~~pTGsGKTl~~~lp 79 (591)
T 2v1x_A 60 KEVFLVMPTGGGKSLCYQLP 79 (591)
T ss_dssp CCEEEECCTTSCTTHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHH
Confidence 35999999999999865433
No 428
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.73 E-value=0.031 Score=53.47 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.8
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 429
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.68 E-value=0.044 Score=48.57 Aligned_cols=22 Identities=14% Similarity=0.437 Sum_probs=20.3
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+|+|++|+|||+|+..|...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999865
No 430
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.67 E-value=0.04 Score=52.24 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=21.2
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
-|+|.|++|+||||+++.|+..+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999887
No 431
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.66 E-value=0.044 Score=48.05 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.7
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|+|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47999999999999999999764
No 432
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.65 E-value=0.043 Score=51.16 Aligned_cols=28 Identities=32% Similarity=0.339 Sum_probs=23.9
Q ss_pred cccccCCCCCCchHHHHHHHHhhCCcchh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGLDYAM 417 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~~~~~ 417 (466)
.|-|+|..|||||++++.|+. +|.+++.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vid 38 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVD 38 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEE
Confidence 367999999999999999988 8777644
No 433
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.63 E-value=0.041 Score=48.02 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.3
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|.|++|+|||+|...+...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999753
No 434
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.62 E-value=0.076 Score=55.36 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=17.7
Q ss_pred ccccccCCCCCCchHHHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~ 409 (466)
+++|+.+|+|+|||..+-....
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~ 44 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICE 44 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHH
Confidence 3699999999999988655543
No 435
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.61 E-value=0.041 Score=47.94 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.7
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|.|++|+|||+|...+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999765
No 436
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.61 E-value=0.042 Score=61.24 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=18.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+++.||||||||+++..+...+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999877776544
No 437
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.59 E-value=0.027 Score=56.56 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.9
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|||||||.+.|+...
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999876
No 438
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.58 E-value=0.046 Score=47.81 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=20.5
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|+|++|+|||+|...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999754
No 439
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.54 E-value=0.096 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.7
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.++|.|+||||||+++..|++..
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHH
Confidence 58999999999999999998864
No 440
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.53 E-value=0.034 Score=53.51 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.7
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|+|||||.+.|+...
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 441
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.50 E-value=0.046 Score=48.40 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
-.|+|.|+||+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 369999999999999999887654
No 442
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.47 E-value=0.11 Score=57.73 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=17.6
Q ss_pred cccccCCCCCCchHHHHHHHH
Q 012305 389 NMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~ 409 (466)
+++++||||+|||+++..+..
T Consensus 111 ~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999997666643
No 443
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.46 E-value=0.048 Score=47.63 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
-.|+|.|++|+|||+|...+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 469999999999999999997543
No 444
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.43 E-value=0.044 Score=48.26 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
-.|+|+|++|+|||+|...+....
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999997543
No 445
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.42 E-value=0.053 Score=47.69 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.7
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|+|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999865
No 446
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.41 E-value=0.044 Score=48.54 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.5
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|+|++|+|||+|...+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 447
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.41 E-value=0.04 Score=51.64 Aligned_cols=69 Identities=22% Similarity=0.201 Sum_probs=37.6
Q ss_pred ccccCCCCCCchH-HHHHHHHhh--CCcchhhcCC--C------ccc-chh----HHHHHHHHHHhhhhhccCceEEEec
Q 012305 390 MLFYGPPGTGKTM-VAREIARKS--GLDYAMMTGG--D------VAP-LGA----QAVTKIHEIFDWAKKSKKGLLLFID 453 (466)
Q Consensus 390 vLl~GppGTGKT~-lA~alA~~l--~~~~~~v~~~--~------l~~-~~~----e~~~~l~~lf~~A~~~~~~~iLflD 453 (466)
.+++||.|+|||+ +.+.+.+.. +..++.++.. + +.. .|. ........+++... .+..+|+||
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~--~~~dvV~ID 108 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDL--TNVDVIGID 108 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCC--TTCSEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHh--cCCCEEEEe
Confidence 6789999999999 556654333 5555444321 0 110 110 00112234444332 347899999
Q ss_pred ccccccc
Q 012305 454 EADAFLC 460 (466)
Q Consensus 454 Eid~l~~ 460 (466)
|+.-|..
T Consensus 109 EaQFf~~ 115 (219)
T 3e2i_A 109 EVQFFDD 115 (219)
T ss_dssp CGGGSCT
T ss_pred chhcCCH
Confidence 9987753
No 448
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.38 E-value=0.046 Score=56.66 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=26.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhh---CCcchhhcCC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS---GLDYAMMTGG 421 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l---~~~~~~v~~~ 421 (466)
.-++|.|+||+|||+|+..++... |.+++.++..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 358899999999999999987665 5566555543
No 449
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.37 E-value=0.05 Score=47.70 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.9
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+|.|++|+|||+|...+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999754
No 450
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.35 E-value=0.042 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=20.1
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+|.|+||+|||+|...|...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 451
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.34 E-value=0.039 Score=56.28 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.8
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|||||||.+.|+...
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 48899999999999999999754
No 452
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.24 E-value=0.056 Score=48.40 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.6
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|.|++|+|||+|...+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999754
No 453
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.21 E-value=0.054 Score=48.15 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
-.|+|+|++|+|||+|...+...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999997643
No 454
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.21 E-value=0.033 Score=59.39 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
..+.|+|++||||||++++|+..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 3588999999999999999999884
No 455
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.19 E-value=0.054 Score=54.77 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.5
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
.|++++||||+|||++++.++..+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999997655
No 456
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.18 E-value=0.054 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
-.|+|+|++|+|||+|...|....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999997643
No 457
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.15 E-value=0.052 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=21.1
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
-|.|.|++|+||||+++.|+..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37789999999999999999887
No 458
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.14 E-value=0.044 Score=48.34 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.8
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+|.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999764
No 459
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.12 E-value=0.056 Score=47.28 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.3
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999754
No 460
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=92.07 E-value=0.096 Score=54.88 Aligned_cols=18 Identities=44% Similarity=0.505 Sum_probs=15.6
Q ss_pred ccccccCCCCCCchHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAR 405 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~ 405 (466)
+++|+++|+|+|||+.+-
T Consensus 159 ~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCEEEECCSSTTSHHHHH
T ss_pred CCEEEECCCCccHHHHHH
Confidence 579999999999998743
No 461
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.05 E-value=0.048 Score=56.79 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=21.0
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.++|.||+|+|||||++.|+...
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 58899999999999999998765
No 462
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.04 E-value=0.057 Score=49.54 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.3
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..++|.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998775
No 463
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.02 E-value=0.028 Score=56.59 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.8
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.+.|.||+|||||||.+.|+...
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47799999999999999999865
No 464
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.02 E-value=0.058 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.6
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|+|++|+|||+|...|...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 465
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=92.00 E-value=0.076 Score=54.75 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=15.2
Q ss_pred ccccccCCCCCCchHHH
Q 012305 388 RNMLFYGPPGTGKTMVA 404 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA 404 (466)
+++|+.||+|+|||+.+
T Consensus 9 ~~vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRF 25 (440)
T ss_dssp CEEEECCCTTSSTTTTH
T ss_pred CCEEEEcCCCCCHHHHH
Confidence 57999999999999974
No 466
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.99 E-value=0.051 Score=56.06 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.4
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
++.|+||+|+|||||.+.|+...
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 37899999999999999998753
No 467
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.98 E-value=0.057 Score=53.54 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=14.8
Q ss_pred ccccccCCCCCCchHHH
Q 012305 388 RNMLFYGPPGTGKTMVA 404 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA 404 (466)
+++++.+|+|+|||+.+
T Consensus 59 ~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCEEECCCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 36999999999999864
No 468
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.97 E-value=0.06 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.6
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|.|++|+|||+|...+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999764
No 469
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.95 E-value=0.053 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.4
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|+|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999754
No 470
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.93 E-value=0.056 Score=48.32 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.8
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
-.|+|+|++|+|||+|...+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 369999999999999999997543
No 471
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.93 E-value=0.06 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.0
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+|+|++|+|||+|...+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999754
No 472
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.93 E-value=0.062 Score=47.74 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.4
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|+|++|+|||+|...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999754
No 473
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.92 E-value=0.061 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..|+|.|++|+|||+|...|....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999997643
No 474
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.91 E-value=0.086 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.6
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
-++|+|+.|+||||+.+.|....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999998764
No 475
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.91 E-value=0.055 Score=48.47 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.8
Q ss_pred cccccCCCCCCchHHHHHHHH
Q 012305 389 NMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~ 409 (466)
.|+|.|+||+|||+|...+..
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 476
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.89 E-value=0.062 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.4
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|+|++|+|||+|...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999754
No 477
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.89 E-value=0.062 Score=47.92 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=20.0
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|.|++|+|||+|...+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999887654
No 478
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.88 E-value=0.058 Score=48.07 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred cccccCCCCCCchHHHHHHHHhh
Q 012305 389 NMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l 411 (466)
.|+|+|++|+|||+|+..+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 69999999999999999997654
No 479
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.88 E-value=0.057 Score=60.14 Aligned_cols=21 Identities=48% Similarity=0.737 Sum_probs=17.2
Q ss_pred cccccCCCCCCchHHHHHHHH
Q 012305 389 NMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~ 409 (466)
.+|+.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998766643
No 480
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=91.88 E-value=0.12 Score=55.90 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=18.1
Q ss_pred ccccccCCCCCCchHHHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~ 409 (466)
+++++++|+|+|||+.+-.++.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 4699999999999997766543
No 481
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.86 E-value=0.047 Score=48.30 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.9
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..|+|.|++|+|||+|...+....
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 369999999999999999997653
No 482
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.86 E-value=0.063 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.|+|.|++|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6999999999999999988754
No 483
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.85 E-value=0.046 Score=47.82 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.5
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
-.|+|.|++|+|||+|...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999764
No 484
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.84 E-value=0.063 Score=47.91 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.0
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
-.|+|.|++|+|||+|...+....
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 369999999999999999997653
No 485
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=91.83 E-value=0.061 Score=61.75 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=15.8
Q ss_pred ccccccCCCCCCchHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREI 407 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~al 407 (466)
+++|+.+|+|+|||+++-.+
T Consensus 72 ~dvlv~apTGSGKTl~~lp~ 91 (1054)
T 1gku_B 72 ESFAATAPTGVGKTSFGLAM 91 (1054)
T ss_dssp CCEECCCCBTSCSHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHH
Confidence 46999999999999744333
No 486
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.82 E-value=0.063 Score=48.24 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=20.4
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|+|++|+|||+|+..+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999754
No 487
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.82 E-value=0.058 Score=47.33 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.3
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|.|++|+|||+|...+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999743
No 488
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.78 E-value=0.16 Score=45.63 Aligned_cols=65 Identities=22% Similarity=0.151 Sum_probs=41.1
Q ss_pred cccc-CCCCCCchHHHHHHHHhh---CCcchhhcCCCcccch-------------hHHHHHHHHHHhhhhhccCceEEEe
Q 012305 390 MLFY-GPPGTGKTMVAREIARKS---GLDYAMMTGGDVAPLG-------------AQAVTKIHEIFDWAKKSKKGLLLFI 452 (466)
Q Consensus 390 vLl~-GppGTGKT~lA~alA~~l---~~~~~~v~~~~l~~~~-------------~e~~~~l~~lf~~A~~~~~~~iLfl 452 (466)
|.|+ +-.|+|||+++-.||..+ |..++.++++.-.... ......+..++..... .+++|||
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~yD~vii 81 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLA--DYDFAIV 81 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTT--TSSEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcC--CCCEEEE
Confidence 5555 568899999999998776 7788888765321100 0001345556665542 3789999
Q ss_pred cccc
Q 012305 453 DEAD 456 (466)
Q Consensus 453 DEid 456 (466)
|=-.
T Consensus 82 D~~~ 85 (206)
T 4dzz_A 82 DGAG 85 (206)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 9543
No 489
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.76 E-value=0.043 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.4
Q ss_pred ccccccCCCCCCchHHHHHHHHhh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKS 411 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l 411 (466)
..+.|.||+|+|||||.+.|+...
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 358899999999999999998876
No 490
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.73 E-value=0.12 Score=52.96 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=14.3
Q ss_pred ccccccCCCCCCchHH
Q 012305 388 RNMLFYGPPGTGKTMV 403 (466)
Q Consensus 388 ~~vLl~GppGTGKT~l 403 (466)
+++++.+|+|+|||+.
T Consensus 94 ~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 94 RDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCCchHH
Confidence 4799999999999984
No 491
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.73 E-value=0.061 Score=51.15 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.9
Q ss_pred ccccCCCCCCchHHHHHHHHhhCCcc
Q 012305 390 MLFYGPPGTGKTMVAREIARKSGLDY 415 (466)
Q Consensus 390 vLl~GppGTGKT~lA~alA~~l~~~~ 415 (466)
+.|+|++|||||++++.|...+|.++
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 67899999999999999999877654
No 492
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.68 E-value=0.066 Score=48.28 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.4
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|+|+||+|||+|...+...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999754
No 493
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.66 E-value=0.2 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.2
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|.|+|+||+|||+|.+.|...
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 45889999999999999999754
No 494
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.63 E-value=0.061 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.4
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|.|++|+|||+|...+...
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999753
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.63 E-value=0.066 Score=56.50 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=0.0
Q ss_pred cccccccccCCCCCCchHHHHH--HHHhh--CCcchhhcCCC
Q 012305 385 APFRNMLFYGPPGTGKTMVARE--IARKS--GLDYAMMTGGD 422 (466)
Q Consensus 385 ~p~~~vLl~GppGTGKT~lA~a--lA~~l--~~~~~~v~~~~ 422 (466)
.+...++|+||||||||||++. ++... +...+.+++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
No 496
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.60 E-value=0.062 Score=48.44 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.4
Q ss_pred ccccccCCCCCCchHHHHHHHHh
Q 012305 388 RNMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~ 410 (466)
..|+|.|++|+|||+|...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999754
No 497
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.57 E-value=0.063 Score=47.78 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.8
Q ss_pred ccccccCCCCCCchHHHHHHHH
Q 012305 388 RNMLFYGPPGTGKTMVAREIAR 409 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~ 409 (466)
..|+|+|++|+|||+|...+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999854
No 498
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.56 E-value=0.061 Score=53.93 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=22.4
Q ss_pred cccccCCCCCCchHHHHHHHHhhCC
Q 012305 389 NMLFYGPPGTGKTMVAREIARKSGL 413 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~l~~ 413 (466)
.+.|.||+|+|||+|.+.|++....
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4889999999999999999998843
No 499
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.55 E-value=0.057 Score=57.51 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.2
Q ss_pred ccccccCCCCCCchHHHHHHHHhhC
Q 012305 388 RNMLFYGPPGTGKTMVAREIARKSG 412 (466)
Q Consensus 388 ~~vLl~GppGTGKT~lA~alA~~l~ 412 (466)
..|+|+|+||+||||+++.|+..++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999998774
No 500
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.47 E-value=0.035 Score=50.20 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=19.5
Q ss_pred cccccCCCCCCchHHHHHHHHh
Q 012305 389 NMLFYGPPGTGKTMVAREIARK 410 (466)
Q Consensus 389 ~vLl~GppGTGKT~lA~alA~~ 410 (466)
.+.|.|+||+|||+|.+.|+..
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998653
Done!