Query 012306
Match_columns 466
No_of_seqs 315 out of 968
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vfk_A AKAP18 delta; APO, hydr 100.0 1.8E-30 6.1E-35 244.7 12.5 203 237-462 1-204 (205)
2 1vgj_A Hypothetical protein PH 99.9 5.9E-26 2E-30 209.8 17.6 151 287-459 32-182 (184)
3 1iuh_A 2'-5' RNA ligase; riken 99.9 1.6E-23 5.4E-28 197.1 12.6 175 241-463 3-183 (198)
4 2d4g_A Hypothetical protein BS 99.8 5E-19 1.7E-23 161.5 14.8 139 288-461 30-169 (171)
5 1jh6_A Cyclic phosphodiesteras 99.7 1E-16 3.5E-21 149.8 11.5 172 240-461 8-181 (189)
6 2cte_A Vigilin; K homology typ 99.5 5.2E-14 1.8E-18 117.6 7.1 73 103-176 14-87 (94)
7 2dgr_A Ring finger and KH doma 99.5 1.1E-13 3.8E-18 113.2 7.6 71 102-173 6-76 (83)
8 2ctl_A Vigilin; K homology typ 99.4 3.8E-13 1.3E-17 113.1 8.5 73 103-176 14-90 (97)
9 1vig_A Vigilin; RNA-binding pr 99.4 4.1E-13 1.4E-17 106.5 6.2 66 105-171 4-70 (71)
10 2ctj_A Vigilin; K homology typ 99.4 6.5E-13 2.2E-17 111.3 6.8 72 103-175 14-87 (95)
11 2ctm_A Vigilin; K homology typ 99.4 1.2E-12 4.2E-17 109.6 8.2 73 103-176 14-88 (95)
12 2ctk_A Vigilin; K homology typ 99.3 1.2E-12 4.1E-17 111.4 7.0 70 105-175 16-86 (104)
13 2ctf_A Vigilin; K homology typ 99.3 2.6E-12 9E-17 108.9 7.4 68 106-176 27-95 (102)
14 1zzk_A Heterogeneous nuclear r 99.2 1.8E-11 6.2E-16 99.5 7.7 72 103-175 4-78 (82)
15 2opv_A KHSRP protein; KH domai 99.2 2.3E-11 8E-16 99.5 6.8 67 105-172 13-84 (85)
16 1x4n_A FAR upstream element bi 99.2 2.7E-11 9.1E-16 100.7 6.7 72 104-176 13-87 (92)
17 1x4m_A FAR upstream element bi 99.2 2.2E-11 7.4E-16 101.6 5.7 70 103-173 12-86 (94)
18 3krm_A Insulin-like growth fac 99.2 3.5E-10 1.2E-14 102.6 14.1 105 105-210 2-113 (163)
19 1dtj_A RNA-binding neurooncolo 99.2 2.1E-11 7E-16 97.4 5.2 67 105-172 2-74 (76)
20 2axy_A Poly(RC)-binding protei 99.2 2.6E-11 8.8E-16 96.5 5.5 69 104-173 3-72 (73)
21 1wvn_A Poly(RC)-binding protei 99.2 2.8E-11 9.5E-16 98.3 5.6 71 103-174 3-76 (82)
22 1j5k_A Heterogeneous nuclear r 99.1 3.1E-11 1.1E-15 99.7 5.6 72 102-174 10-84 (89)
23 2p2r_A Poly(RC)-binding protei 99.1 3.4E-11 1.2E-15 96.3 5.2 69 104-173 3-74 (76)
24 1ec6_A RNA-binding protein NOV 99.1 4.5E-11 1.5E-15 98.1 5.8 71 105-176 2-78 (87)
25 1j4w_A FUSE binding protein; s 99.1 3.2E-10 1.1E-14 104.2 12.0 106 104-210 1-132 (174)
26 2jzx_A Poly(RC)-binding protei 99.1 8.1E-11 2.8E-15 106.6 7.2 106 104-210 3-117 (160)
27 2hh3_A KH-type splicing regula 99.1 1E-10 3.6E-15 99.7 7.3 71 105-176 10-83 (106)
28 1we8_A Tudor and KH domain con 99.1 8.2E-11 2.8E-15 99.9 6.4 69 104-173 13-86 (104)
29 3n89_A Defective in GERM LINE 99.1 6.4E-11 2.2E-15 121.3 6.4 66 103-169 27-102 (376)
30 2anr_A Neuro-oncological ventr 99.1 1.8E-10 6.1E-15 106.2 6.8 108 102-210 2-132 (178)
31 2hh2_A KH-type splicing regula 99.0 1.6E-10 5.4E-15 98.7 5.2 66 107-173 8-79 (107)
32 2jvz_A KH type-splicing, FAR u 99.0 2.8E-10 9.6E-15 103.1 6.3 104 106-210 2-119 (164)
33 1k1g_A SF1-BO isoform; splicin 99.0 3.4E-10 1.2E-14 100.1 6.2 71 103-173 4-99 (131)
34 3krm_A Insulin-like growth fac 98.9 1.8E-09 6E-14 98.0 7.9 73 103-176 82-159 (163)
35 2yqr_A KIAA0907 protein; struc 98.9 2.8E-09 9.6E-14 92.7 6.6 71 106-176 12-102 (119)
36 2jvz_A KH type-splicing, FAR u 98.8 1.9E-09 6.4E-14 97.6 5.4 70 105-175 90-162 (164)
37 2cpq_A FragIle X mental retard 98.8 1.7E-09 5.7E-14 89.6 3.5 67 102-170 11-78 (91)
38 3n89_A Defective in GERM LINE 98.8 3.7E-09 1.3E-13 108.3 5.7 71 99-170 179-258 (376)
39 2jzx_A Poly(RC)-binding protei 98.8 5.3E-09 1.8E-13 94.5 5.9 69 104-173 87-159 (160)
40 2anr_A Neuro-oncological ventr 98.7 8E-09 2.8E-13 95.0 5.1 69 104-173 102-175 (178)
41 1j4w_A FUSE binding protein; s 98.7 1.1E-08 3.7E-13 93.9 4.8 66 105-171 103-174 (174)
42 2qnd_A FMR1 protein; KH domain 98.5 4.6E-08 1.6E-12 87.6 4.8 65 108-173 69-142 (144)
43 2bl5_A MGC83862 protein, quaki 98.5 7.4E-08 2.5E-12 85.9 5.3 65 107-171 3-99 (140)
44 2e3u_A PH-DIM2P, hypothetical 98.4 3.5E-07 1.2E-11 87.4 6.2 63 107-171 35-101 (219)
45 3u1k_A Polyribonucleotide nucl 98.1 9.6E-07 3.3E-11 96.3 3.7 64 105-171 566-629 (630)
46 2qnd_A FMR1 protein; KH domain 98.0 2.9E-06 9.9E-11 75.9 3.8 94 104-210 2-95 (144)
47 2e3u_A PH-DIM2P, hypothetical 97.9 9.4E-06 3.2E-10 77.5 5.7 53 116-173 139-191 (219)
48 1tua_A Hypothetical protein AP 97.7 3.7E-05 1.3E-09 71.9 6.3 65 106-172 4-72 (191)
49 1tua_A Hypothetical protein AP 97.6 4.4E-05 1.5E-09 71.4 4.1 54 115-173 107-160 (191)
50 4aid_A Polyribonucleotide nucl 97.4 2.7E-05 9.1E-10 86.0 0.9 65 106-173 570-634 (726)
51 3v69_A Protein filia; RNA-bind 96.9 0.0015 5.2E-08 57.4 6.7 69 107-176 57-127 (140)
52 2fsq_A ATU0111 protein; alpha- 96.4 0.0079 2.7E-07 58.1 8.2 149 287-459 76-240 (243)
53 3cdi_A Polynucleotide phosphor 95.1 0.0036 1.2E-07 69.3 0.0 65 106-173 560-624 (723)
54 1e3p_A Guanosine pentaphosphat 94.7 0.0015 5E-08 72.7 -4.5 62 107-171 599-660 (757)
55 2z0s_A Probable exosome comple 81.5 2.6 8.8E-05 40.1 6.6 63 108-173 150-212 (235)
56 2ba0_A Archeal exosome RNA bin 76.6 2.6 8.8E-05 40.0 4.9 62 108-173 138-199 (229)
57 2ja9_A Exosome complex exonucl 73.2 2.6 8.9E-05 38.4 3.8 59 108-169 93-152 (175)
58 2cxc_A NUSA; transcription ter 69.2 2.5 8.6E-05 37.3 2.7 38 105-142 35-72 (144)
59 2cxc_A NUSA; transcription ter 67.1 1 3.5E-05 39.9 -0.3 39 104-142 101-139 (144)
60 2nn6_G Exosome complex exonucl 58.5 2.6 8.9E-05 41.5 0.7 59 108-169 212-270 (289)
61 2je6_I RRP4, exosome complex R 57.3 1.4 4.7E-05 42.5 -1.5 60 108-170 157-216 (251)
62 2asb_A Transcription elongatio 52.4 8.6 0.00029 37.0 3.2 40 105-144 183-222 (251)
63 2ctf_A Vigilin; K homology typ 52.3 0.17 5.7E-06 42.2 -7.7 51 152-210 5-55 (102)
64 1hh2_P NUSA, N utilization sub 47.5 10 0.00035 38.1 3.1 40 104-143 301-340 (344)
65 1k0r_A NUSA; two component arr 44.8 13 0.00044 37.7 3.3 39 105-143 306-344 (366)
66 2pt7_G HP1451, hypothetical pr 42.6 11 0.00037 33.6 2.1 30 107-136 34-63 (152)
67 1jh6_A Cyclic phosphodiesteras 42.1 36 0.0012 30.5 5.6 42 345-397 4-45 (189)
68 1j26_A Immature colon carcinom 39.2 12 0.00041 31.6 1.7 55 122-176 31-108 (112)
69 2jva_A Peptidyl-tRNA hydrolase 34.1 36 0.0012 28.4 3.9 54 122-177 24-101 (108)
70 3i24_A HIT family hydrolase; s 34.0 63 0.0021 28.2 5.7 81 301-381 47-138 (149)
71 3i0u_A Phosphothreonine lyase 33.4 2E+02 0.0067 26.6 8.9 89 292-394 80-182 (218)
72 2o5a_A BH1328 protein; BHR21, 33.1 1.2E+02 0.004 25.9 7.1 63 306-383 4-66 (125)
73 4dh9_Y YAEJ; ribosome, YAEJ, r 32.9 54 0.0018 28.6 5.0 56 121-178 23-102 (140)
74 1wh9_A 40S ribosomal protein S 32.4 15 0.00053 29.7 1.3 30 107-136 36-65 (92)
75 2fsq_A ATU0111 protein; alpha- 31.5 37 0.0013 32.3 4.0 37 289-325 174-211 (243)
76 3udc_A Small-conductance mecha 30.8 2.1E+02 0.0071 27.2 9.4 72 308-383 193-267 (285)
77 2id1_A Hypothetical protein; a 29.9 1.5E+02 0.0052 25.4 7.3 61 308-383 6-66 (130)
78 3iev_A GTP-binding protein ERA 26.0 33 0.0011 33.1 2.6 37 105-141 239-284 (308)
79 3bo6_A Hydrophilic protein, VI 25.9 1.9E+02 0.0064 26.8 7.4 91 290-394 80-184 (220)
80 2vv5_A MSCS, small-conductance 24.1 2.3E+02 0.0077 27.0 8.3 83 294-383 186-268 (286)
81 3ohe_A Histidine triad (HIT) p 22.2 2E+02 0.0068 24.3 6.7 79 300-378 46-135 (137)
82 3ups_A Iojap-like protein; PSI 21.9 1.8E+02 0.006 25.2 6.2 62 307-383 21-82 (136)
83 1wf3_A GTP-binding protein; GT 20.8 24 0.00081 34.2 0.4 26 107-132 231-257 (301)
No 1
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=99.97 E-value=1.8e-30 Score=244.66 Aligned_cols=203 Identities=21% Similarity=0.381 Sum_probs=161.5
Q ss_pred hcccceeeeeeccCCCccccccccccccccccccccCCCCCCCCCCCCCccccCCCcceEEeeccccCCHHHHHHHHHHH
Q 012306 237 VDQEHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVL 316 (466)
Q Consensus 237 ~rp~~fva~~~~~~~~~~~vk~~~~~i~~~~~~~~~~r~~~~~~~gi~~~~~v~p~~LHLTL~fLgl~~~eei~~a~~~L 316 (466)
+|+++||||.+..+++.+.+...+..+- . .++|+ ...|+++++|||||.|||++++++++++.++|
T Consensus 1 ~~~r~Fial~~~~~~~~~~l~~~~~~l~--~-----------~~~~~-~~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l 66 (205)
T 2vfk_A 1 YQPNYFLSIPITNKKITAGIKVLQNSIL--R-----------QDNRL-TKAMVGDGSFHITLLVMQLLNEDEVNIGTDAL 66 (205)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHHHHHH--H-----------HCGGG-GGGBCCTTCCEEEEEEECCCSHHHHHHHHHHH
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHHHH--h-----------cCcch-HHHhCCcCccEEEEEEEEcCCHHHHHHHHHHH
Confidence 4789999999987678888888887651 0 01122 24699999999999999999999999999999
Q ss_pred HHhhHHhhhhcCCCCeEEEEcccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEE
Q 012306 317 KSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAT 396 (466)
Q Consensus 317 ~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~~rVLya~V~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~d~~r~fkPHiT 396 (466)
+++...+.+++..+||.|+|+|+|+|++ +|||+++.+.++.+.|.+|++.|.+.|..+|+... +.++|+||||
T Consensus 67 ~~~~~~~~~~~~~~pf~l~l~g~~~F~~-----~vl~~~v~~~~~~~~L~~L~~~l~~~~~~~g~~~~--~~~~f~PHiT 139 (205)
T 2vfk_A 67 LELKPFVEEILEGKHLTLPFHGIGTFQG-----QVGFVKLADGDHVSALLEIAETAKRTFQEKGILAG--ESRTFKPHLT 139 (205)
T ss_dssp HHHHHHHHHHTTTSCCEEEEEEEEEETT-----TEEEEEECCSHHHHHHHHHHHHHHHHHHTTTCCBC--CSSCCCCCEE
T ss_pred HHHHHHHHHHhCCCCcEEEEechhhCCC-----cEEEEeecccccHHHHHHHHHHHHHHHHHcCCCcC--CCCCcceEEE
Confidence 9987666667777999999999999987 79999998632347899999999999999999542 2689999999
Q ss_pred eeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeee-ccCCCCceeEEEEEeCCCC
Q 012306 397 LMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRF-VYDESGFYHCCASIPFPEN 462 (466)
Q Consensus 397 Lar~~~~~~~~~~~~~~~fda~~il~~~~~~~fG~~~V~eI~Ls~~~-~~~~~g~Y~~l~si~L~~~ 462 (466)
|+|.++...... .....++ .++++.+.++.||.+.|++|+||++. ..+.+|+|+++++|+|++.
T Consensus 140 lar~~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~v~~i~L~~~~~~~~~~g~Y~~~~~~~L~~~ 204 (205)
T 2vfk_A 140 FMKLSKAPMLWK-KGVRKIE-PGLYEQFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSIVIGEK 204 (205)
T ss_dssp EEEGGGCHHHHH-TTCSSCC-GGGGGGGTTCEEEEEECCEEEEEESSSCCCTTSCCCEEEEEECSSC
T ss_pred EEecccchhhhh-ccccccC-HHHHHHhcCCcCcEEEeCEEEEEEcCCCCCCCCcEEEEEEEecCCC
Confidence 999865311000 0012233 36778889999999999999999876 4556899999999999864
No 2
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=99.94 E-value=5.9e-26 Score=209.77 Aligned_cols=151 Identities=17% Similarity=0.345 Sum_probs=130.9
Q ss_pred cccCCCcceEEeeccccCCHHHHHHHHHHHHHhhHHhhhhcCCCCeEEEEcccccCCCCCCCceEEEEeeeccCChhHHH
Q 012306 287 IFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLL 366 (466)
Q Consensus 287 ~~v~p~~LHLTL~fLgl~~~eei~~a~~~L~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~~rVLya~V~~~~~~~~L~ 366 (466)
.|++|++|||||.|||++++++++++.++|+++.. ..+||.|+|.|+|+|++ +++|+|||+++.+. ..|.
T Consensus 32 ~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~~------~~~pf~l~l~g~g~F~~-~~~p~vl~~~v~~~---~~L~ 101 (184)
T 1vgj_A 32 KFVERENLHITLKFLGEITEEQAEEIKNILKKIAE------KYKKHEVKVKGIGVFPN-PNYIRVIWAGIEND---EIIR 101 (184)
T ss_dssp EECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHHT------TSBCEEEEEEEEEEEEC-SSSEEEEEEEEETC---HHHH
T ss_pred EecCccccEEEEEeecCCCHHHHHHHHHHHHHHHc------cCCCeEEEEeeEeeCCC-CCCCcEEEEEecCC---HHHH
Confidence 59999999999999999999999999999988732 35899999999999987 78899999999852 7899
Q ss_pred HHHHHHHHHHHHCCCccccCCCCCceeeEEeeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeeeccC
Q 012306 367 HACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYD 446 (466)
Q Consensus 367 ~L~~~L~~~f~~~Gl~~e~d~~r~fkPHiTLar~~~~~~~~~~~~~~~fda~~il~~~~~~~fG~~~V~eI~Ls~~~~~~ 446 (466)
+|++.|.+.|...|+..+ . +|+|||||+|.+.... .-++.+++..+.++.+|.+.|++|+|+++...+
T Consensus 102 ~L~~~l~~~l~~~g~~~~---~-~f~PHiTLar~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~L~~s~~~~ 169 (184)
T 1vgj_A 102 EMAREIEDELAKLGFKKE---G-NFVAHITLGRVKFVKD--------KLGLTMKLKELANEDFGSFVVDAIELKKSTLTP 169 (184)
T ss_dssp HHHHHHHHHHHTTTCCCC---C-CCCCEEEEEEEEEESC--------HHHHHHHHHHTTTCEEEEEEECEEEEEEEEEET
T ss_pred HHHHHHHHHHHHcCCCCC---C-CccceEEEEeecccCc--------HHHHHHHHHHhcCCCCCcEEEeEEEEEEeeecC
Confidence 999999999999999875 5 9999999999753211 013457788888999999999999999887766
Q ss_pred CCCceeEEEEEeC
Q 012306 447 ESGFYHCCASIPF 459 (466)
Q Consensus 447 ~~g~Y~~l~si~L 459 (466)
.|+.|.++++|+|
T Consensus 170 ~g~~y~~l~~~~L 182 (184)
T 1vgj_A 170 KGPIYETLARFEL 182 (184)
T ss_dssp TEEEEEEEEEEEC
T ss_pred CCCceeEEEEEeC
Confidence 6799999999999
No 3
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=99.90 E-value=1.6e-23 Score=197.15 Aligned_cols=175 Identities=16% Similarity=0.165 Sum_probs=138.6
Q ss_pred ceeeeeeccCCCccccccccccccccccccccCCCCCCCCCCCCCccccCCCcceEEeeccccCCHHHHHHHHHHHHHhh
Q 012306 241 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 320 (466)
Q Consensus 241 ~fva~~~~~~~~~~~vk~~~~~i~~~~~~~~~~r~~~~~~~gi~~~~~v~p~~LHLTL~fLgl~~~eei~~a~~~L~~i~ 320 (466)
+||||.+.. ++.+.+...+..+. . +. ...|++++++||||.|||++++++++.+.++|.++.
T Consensus 3 lFial~~p~-~~~~~l~~~~~~l~---------------~-~~-~~r~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~~ 64 (198)
T 1iuh_A 3 LFYAVFLPE-EVRAALVEAQTKVR---------------P-FR-GWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLA 64 (198)
T ss_dssp EEEEEECCH-HHHHHHHHHHGGGT---------------T-CT-TEEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHH
T ss_pred EEEEEeCCH-HHHHHHHHHHHHhh---------------h-hc-CCcccCCCCCEEEEEeCCcCCHHHHHHHHHHHHHHh
Confidence 799998864 56677777776541 0 11 245999999999999999999999999999998874
Q ss_pred HHhhhhcCCCCeEEEEcccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHC-C-----CccccCCCCCceee
Q 012306 321 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEA-G-----LVFHRDYNKKLKLH 394 (466)
Q Consensus 321 ~~i~~~L~~~pf~L~l~GLg~F~~dp~~~rVLya~V~~~~~~~~L~~L~~~L~~~f~~~-G-----l~~e~d~~r~fkPH 394 (466)
. ..+||.|+|.|+|+|++ ..+++|||+++ + ...|.+|++.|.+.+... | +..+ .++|+||
T Consensus 65 ~------~~~pf~l~l~g~g~F~~-~~~p~vl~l~v-~---~~~L~~L~~~l~~~l~~~~g~~~~~~~~~---~~~f~PH 130 (198)
T 1iuh_A 65 R------LEAPFRARLRGTGYFPN-EGTPRVWFAKA-E---AEGFLRLAEGLRAGVEELLGEEAVRIPGW---DKPFKPH 130 (198)
T ss_dssp H------HSCCEEEEEEEEEEESS-SSSCSEEEEEE-E---CHHHHHHHHHHHHHHHHHHGGGGGGSTTT---TSCCCCE
T ss_pred c------cCCCeEEEEcceEECCC-CCCCCEEEEEC-C---CHHHHHHHHHHHHHHHHhcCCCcccccCC---CCCCCCc
Confidence 2 25899999999999987 67889999999 4 478999999999999999 9 8765 5899999
Q ss_pred EEeeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeeeccCCCCceeEEEEEeCCCCC
Q 012306 395 ATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPFPENM 463 (466)
Q Consensus 395 iTLar~~~~~~~~~~~~~~~fda~~il~~~~~~~fG~~~V~eI~Ls~~~~~~~~g~Y~~l~si~L~~~~ 463 (466)
|||+|.+.... .+. . ... .| .|.|++|+|+++.....|+.|.++++|+|.+.+
T Consensus 131 iTLar~~~~~~--------~l~--~---~l~--~~-~~~v~~~~L~~S~l~~~G~~y~~l~~~~L~~~~ 183 (198)
T 1iuh_A 131 ITLARRKAPAP--------RVP--P---VLF--GL-EWPVEGFALVRSELKPKGPVYTVLEKFSLRGEH 183 (198)
T ss_dssp EEEEEESSCCC--------CCC--C---CCC--CE-EEEECEEEEEEEEECSSSEEEEEEEEEECCCCC
T ss_pred EEeEeccCcch--------hHH--H---hhc--Cc-eEEecEEEEEEEEeCCCCCeeeEEEEEECCCCC
Confidence 99999753211 011 1 111 33 689999999988776667899999999997653
No 4
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=5e-19 Score=161.51 Aligned_cols=139 Identities=17% Similarity=0.257 Sum_probs=109.2
Q ss_pred ccCCCcceEEeeccccCCHHHHHHHHHHHHHhhHHhhhhcCCCCeEEEEcccccCCCCCCCceEEEEeeeccCChhHHHH
Q 012306 288 FIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLH 367 (466)
Q Consensus 288 ~v~p~~LHLTL~fLgl~~~eei~~a~~~L~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~~rVLya~V~~~~~~~~L~~ 367 (466)
|++| ||||.|+|.+++++++++.++|+++.. ..+||.|+|.|+|+|+. . ..|||+++.+ ...|.+
T Consensus 30 ~v~p---HiTL~f~g~~~~~~~~~l~~~l~~~~~------~~~pf~l~l~~~g~F~~--~-~~vl~l~~~~---~~~L~~ 94 (171)
T 2d4g_A 30 LIPP---HLTLRASFECAEEKADQLVSHLRNIAK------ESHPLVLKMTKYSSFAP--V-NNVIYIKAEP---TEELKT 94 (171)
T ss_dssp TSCS---CBCCSSCEECCGGGHHHHHHHHHHHHH------TCCCEEEEEEEEEECTT--T-CCCEEEEECC---CHHHHH
T ss_pred CCCC---eEEeecCCcCChHHHHHHHHHHHHHHc------cCCCEEEEECCcEEeCC--C-CcEEEEEccC---ChHHHH
Confidence 7888 999999999999999999999888742 35899999999999973 1 1499999985 478999
Q ss_pred HHHHHHHHHHHCCCccccCCCCCceeeEEeeeecccccccCCCccccccHHHHHHHhCCCcc-ccEEecEEEEEeeeccC
Q 012306 368 ACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEW-GEYLIKEAHLSQRFVYD 446 (466)
Q Consensus 368 L~~~L~~~f~~~Gl~~e~d~~r~fkPHiTLar~~~~~~~~~~~~~~~fda~~il~~~~~~~f-G~~~V~eI~Ls~~~~~~ 446 (466)
|++.|.+.|... .+ .++|+|||||+|.... . ++.++++.+....+ +.+.|++|+|+++ .
T Consensus 95 L~~~l~~~~~~~---~~---~~~f~PHiTLar~~~~---------~--~~~~~~~~~~~~~~~~~~~v~~i~L~~s---~ 154 (171)
T 2d4g_A 95 LNEKLYTGVLAG---EQ---EYNFVPHVTVGQNLSD---------D--EHSDVLGQLKMQEVSHEEIVDRFHLLYQ---L 154 (171)
T ss_dssp HHHHTTSGGGCS---CC---CSCCCCEEEEECSCCH---------H--HHHHHHHHHTTSCCCEEEEECEEEEEEE---C
T ss_pred HHHHHHhccccc---cc---CCCCCCeEEeecCCCH---------H--HHHHHHHHhcCCCCceeEEECeEEEEEE---C
Confidence 999998876541 22 6899999999985321 1 13366777544333 5899999999987 4
Q ss_pred CCCceeEEEEEeCCC
Q 012306 447 ESGFYHCCASIPFPE 461 (466)
Q Consensus 447 ~~g~Y~~l~si~L~~ 461 (466)
.++.|.++++|+|.+
T Consensus 155 ~g~~y~~l~~~~L~~ 169 (171)
T 2d4g_A 155 ENGSWTVYETFLLGR 169 (171)
T ss_dssp TTSCEEEEEEEECC-
T ss_pred CCCcEEEEEEEecCC
Confidence 578999999999975
No 5
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=99.68 E-value=1e-16 Score=149.78 Aligned_cols=172 Identities=9% Similarity=-0.014 Sum_probs=125.6
Q ss_pred cceeeeeeccCCCccccccccccccccccccccCCCCCCCCCCCCCccccCCCcceEEeeccccCCHHHHHHHHHHHHHh
Q 012306 240 EHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSI 319 (466)
Q Consensus 240 ~~fva~~~~~~~~~~~vk~~~~~i~~~~~~~~~~r~~~~~~~gi~~~~~v~p~~LHLTL~fLgl~~~eei~~a~~~L~~i 319 (466)
.|++.+-. .+++.+.+...+..+. ...+.++.++|||| ||.++.+ ++.+.++|+++
T Consensus 8 ~~~f~~~p-p~~~~~~l~~~~~~l~--------------------~~~~~~~~~~HiTL--lG~~~~~-~~~l~~~L~~~ 63 (189)
T 1jh6_A 8 VYSVWALP-DEESEPRFKKLMEALR--------------------SEFTGPRFVPHVTV--AVSAYLT-ADEAKKMFESA 63 (189)
T ss_dssp EEEEEEEE-CTTTHHHHHHHHHHHH--------------------HHHTCCCCCCCEEE--EEEEEEC-HHHHHHHHHHH
T ss_pred cEEEEEEC-CHHHHHHHHHHHHHHH--------------------HHcCCCCCCCEEEE--eCCCCCC-HHHHHHHHHHH
Confidence 45555544 5566777777766541 11244778999999 8998776 88888888877
Q ss_pred hHHhhhhcCCCCeEEEEcccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEEeee
Q 012306 320 SSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMN 399 (466)
Q Consensus 320 ~~~i~~~L~~~pf~L~l~GLg~F~~dp~~~rVLya~V~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~d~~r~fkPHiTLar 399 (466)
.. ..+||.|+|.|+|+|. ..+||||++|.+ ...|..|++.+.+. +|+.. .++|.|||||+|
T Consensus 64 a~------~~~pf~l~l~g~g~~~---~~~rvlw~~v~~---~~~L~~L~~~v~~~---~g~~~----~~~f~PHlTLar 124 (189)
T 1jh6_A 64 CD------GLKAYTATVDRVSTGT---FFFQCVFLLLQT---TPEVMEAGEHCKNH---FNCST----TTPYMPHLSLLY 124 (189)
T ss_dssp HH------TCBCEEEEEEEEEEEE---ETTEEEEEEECC---CHHHHHHHHHHHHH---TTCCC----CSCCCCEEEEEC
T ss_pred Hh------hCCCeEEEEcceeccC---ccceEEEEeecC---CHHHHHHHHHHHHH---hCCCC----CCCCCCeEEEEE
Confidence 42 3589999999999953 356999999985 37899999999886 68865 379999999998
Q ss_pred ecccccccCCCccccccHHHHHHHh-CCCccccEEecEEEEEeeeccC-CCCceeEEEEEeCCC
Q 012306 400 IRHKKRRKGTRRVDYFDARDIFKQF-GSKEWGEYLIKEAHLSQRFVYD-ESGFYHCCASIPFPE 461 (466)
Q Consensus 400 ~~~~~~~~~~~~~~~fda~~il~~~-~~~~fG~~~V~eI~Ls~~~~~~-~~g~Y~~l~si~L~~ 461 (466)
.+.... ..-++.+.++.+ .++.++.|.|++|.|+++..+. .-+-|..+++++|+.
T Consensus 125 ~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~v~~~~L~~s~~~~~~~~~w~l~~~~~~~~ 181 (189)
T 1jh6_A 125 AELTEE-------EKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVAVCNLNP 181 (189)
T ss_dssp CCCCHH-------HHHHHHHHHHHHCTTCTTCEEEEEEEEEEECCTTCTTCTTCEEEEEEECBC
T ss_pred ecCCHH-------HHHHHHHHHHhhccCCCCCcEEeeEEEEEEeCCCCCccCeEEEEEEEEcCC
Confidence 642111 011233555555 4678889999999998886532 347899999999975
No 6
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=5.2e-14 Score=117.64 Aligned_cols=73 Identities=26% Similarity=0.417 Sum_probs=67.4
Q ss_pred CCCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012306 103 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 176 (466)
Q Consensus 103 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~ 176 (466)
..+++..+.||+++||+|||+||.++|+|+++|||+|+||+.++ ++.|+|+|. ++++.+|+++|+.++.+..+
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-HHHHHHHHHHHHHHhhcccc
Confidence 45789999999999999999999999999999999999998654 578999998 89999999999999998665
No 7
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=113.17 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=64.6
Q ss_pred CCCCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 102 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 102 s~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
..++....+.||.+++|+||||+|+++|+|+++|||+|+||+.++...|+|+|. ++++++|++.|+.++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~-~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGM-PENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEEC-TTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcC-HHHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999999999998777778999997 58999999999997654
No 8
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=3.8e-13 Score=113.10 Aligned_cols=73 Identities=26% Similarity=0.367 Sum_probs=66.3
Q ss_pred CCCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC----CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012306 103 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 176 (466)
Q Consensus 103 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~----~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~ 176 (466)
...++..+.||+.+|+.|||++|.++++|+++|||+|+||..+. .+.|+|+|. ++++.+|+++|+.|+.+...
T Consensus 14 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 14 LRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp HTTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999999999998774 357999997 89999999999999988655
No 9
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.38 E-value=4.1e-13 Score=106.48 Aligned_cols=66 Identities=18% Similarity=0.405 Sum_probs=59.6
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHH
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAII 171 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~~~~~v~~A~~~I~~i~ 171 (466)
-.+.++.||+.+||.|||+||.++++|+++|||+|+||..++ ++.|+|+|. .+++.+|+++|+.|+
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD-PQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES-SHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC-HHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999998764 458999998 589999999998764
No 10
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.37 E-value=6.5e-13 Score=111.30 Aligned_cols=72 Identities=25% Similarity=0.402 Sum_probs=64.8
Q ss_pred CCCceEEEEeccccceeecCCCchhHHHHHHHh-CcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 012306 103 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEM-GVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAV 175 (466)
Q Consensus 103 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT-~~~I~iP~~~~-~~~I~I~G~~~~~v~~A~~~I~~i~~~~~ 175 (466)
....+.++.||+.+|+.|||++|.++|+|+++| ||+|+||..++ ++.|+|.|++ .+|++|+++|+.|+.+..
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~-~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPS-SDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCH-HHHHHHHHHHHHHHHHHS
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCH-HHHHHHHHHHHHHHhhhh
Confidence 345677999999999999999999999999999 99999999776 5689999985 499999999999999854
No 11
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.36 E-value=1.2e-12 Score=109.60 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=66.3
Q ss_pred CCCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC--CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012306 103 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 176 (466)
Q Consensus 103 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~--~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~ 176 (466)
..+.+..+.||+.+|+.|||++|.++|+|+++|||+|+||..++ .+.|+|+|. .++|++|++.|+.|+.+..+
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-HHHHHHHHHHHHHHHHHHHT
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999998764 347999997 69999999999999998665
No 12
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=1.2e-12 Score=111.42 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=64.1
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAV 175 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~~~~~v~~A~~~I~~i~~~~~ 175 (466)
....++.||+.+||.|||+||.++|+|+++|||+|+||..+. ++.|+|+|. .+++.+|++.|+.++.+..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL-AANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhhHH
Confidence 478899999999999999999999999999999999998765 468999997 5999999999999998754
No 13
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=2.6e-12 Score=108.95 Aligned_cols=68 Identities=31% Similarity=0.468 Sum_probs=63.3
Q ss_pred ceEEEEeccccceeecCCCchhHHHHHHH-hCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012306 106 HSLSVEVGASVIRFIKGKEGSTQKKFEKE-MGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVE 176 (466)
Q Consensus 106 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~e-T~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~ 176 (466)
.+.+|.||+.||++|||++|+++|+|+++ ++++|+||+ .++.|+|+|+ ++.|.+|+.+|+.++++...
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--~~~~ItI~G~-~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--GEDKITLEGP-TEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--SSCEEEEEEC-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--CCCEEEEECC-HHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999997 699999998 4678999998 79999999999999998766
No 14
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.23 E-value=1.8e-11 Score=99.47 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=63.7
Q ss_pred CCCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 012306 103 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAV 175 (466)
Q Consensus 103 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~~~~~v~~A~~~I~~i~~~~~ 175 (466)
..+++.++.||.++++.||||+|+++++|+++|||+|+|+.... .+.|+|+|. .++|.+|+..|+.++.+..
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhcc
Confidence 34788999999999999999999999999999999999987522 357999995 8999999999999998743
No 15
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.19 E-value=2.3e-11 Score=99.49 Aligned_cols=67 Identities=25% Similarity=0.374 Sum_probs=59.4
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHH
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIA 172 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~~~~~v~~A~~~I~~i~~ 172 (466)
.....+.||.+++|.||||+|+++|+|+++|||+|+|+..+. +..|+|+| +++++.+|++.|+.++.
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHhc
Confidence 356799999999999999999999999999999999998543 12499999 68999999999999875
No 16
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.18 E-value=2.7e-11 Score=100.68 Aligned_cols=72 Identities=22% Similarity=0.391 Sum_probs=64.4
Q ss_pred CCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012306 104 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 176 (466)
Q Consensus 104 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~ 176 (466)
......+.||..+++.||||+|.++++|+++|||+|+|+.... ...|+|+|. .++|.+|+..|+.++.+.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-PESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhccc
Confidence 4577899999999999999999999999999999999997533 357999997 89999999999999998655
No 17
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.17 E-value=2.2e-11 Score=101.62 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=63.2
Q ss_pred CCCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 103 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 103 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
.++....+.||..+++.||||+|+++|+|+++|+|+|+|+..+. +..|+|+| ++++|.+|++.|+.++.+
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999997643 34599999 579999999999999876
No 18
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.17 E-value=3.5e-10 Score=102.65 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=87.0
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC----CCcEEEEccChhHHHHHHHHHHHHHHHhhh-CC-
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE-SP- 178 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~----~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~-~~- 178 (466)
+-+..+.||..++|.||||+|+++++|+++|||+|+|+..+. ...|+|+|. .+++.+|+..|..++.+... .|
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~-~e~v~~A~~~I~~~~~e~~~~~~~ 80 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGP-PEAQFKAQGRIYGKLKEENFFGPK 80 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHTTSSCSS
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcccccccc
Confidence 346789999999999999999999999999999999988542 235999994 79999999999999887421 11
Q ss_pred -CCcceEEEEeccccchhhhccHHHHHHHHhcc
Q 012306 179 -SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 210 (466)
Q Consensus 179 -k~~~ThFIsIPl~~hp~I~~~~~~f~~~Il~~ 210 (466)
....+..+.||-.++..|+|+.....+.|.+.
T Consensus 81 ~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~ 113 (163)
T 3krm_A 81 EEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 113 (163)
T ss_dssp CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred cCCceEEEEEcChhheeeEEcCCChHHHHHHHH
Confidence 12235567799999999999999999999875
No 19
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.17 E-value=2.1e-11 Score=97.43 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=59.5
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHH
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIA 172 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~~~~~v~~A~~~I~~i~~ 172 (466)
+.+..+.||..++|.|||++|.++++|+++|||+|+|++.++ .+.|+|+|. .+++.+|+..|+.++.
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVT 74 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999998532 357999997 7999999999998764
No 20
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.16 E-value=2.6e-11 Score=96.51 Aligned_cols=69 Identities=25% Similarity=0.333 Sum_probs=61.8
Q ss_pred CCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 104 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 104 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
......+.||.+.+|.|||++|.++|+|+++|||+|+|+..+. ...|+|+|. .+++.+|+..|..++.+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-HHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 4577899999999999999999999999999999999998644 346899997 89999999999988864
No 21
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.16 E-value=2.8e-11 Score=98.31 Aligned_cols=71 Identities=17% Similarity=0.323 Sum_probs=61.9
Q ss_pred CCCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 012306 103 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 174 (466)
Q Consensus 103 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~~~~~v~~A~~~I~~i~~~~ 174 (466)
..+.+..+.||.+++|.||||+|+++++|+++|||+|+|+.... ...|+|+|. .+++.+|+..|+.++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS-AASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 45788999999999999999999999999999999999987422 457999996 599999999999998763
No 22
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.15 E-value=3.1e-11 Score=99.66 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=64.0
Q ss_pred CCCCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 012306 102 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 174 (466)
Q Consensus 102 s~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~~~~~v~~A~~~I~~i~~~~ 174 (466)
...+.+..+.||.++++.||||+|+++|+|+++|||+|+|+.... ++.|+|+|. .++|.+|+..|+.++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 345788899999999999999999999999999999999987422 467999997 799999999999999874
No 23
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.14 E-value=3.4e-11 Score=96.31 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=61.2
Q ss_pred CCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 104 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 104 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
.+.+..+.||..++|.|||++|.++++|+++|||+|+|+.... .+.|+|+|. ++++.+|+..|+.++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-AASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-HHHHHHHHHHHHHHHHc
Confidence 3677899999999999999999999999999999999987422 467999997 89999999999988754
No 24
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.13 E-value=4.5e-11 Score=98.14 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=62.4
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 176 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~ 176 (466)
+.+..+.||..++|.|||++|.++++|+++|||+|+|++.++ ...|+|+|. .+++..|+..|..++.+...
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~~ 78 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQG 78 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcccc
Confidence 456789999999999999999999999999999999997532 357999997 79999999999999877443
No 25
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.13 E-value=3.2e-10 Score=104.19 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=87.0
Q ss_pred CCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhhCC--
Q 012306 104 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP-- 178 (466)
Q Consensus 104 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~~~-- 178 (466)
+..+..+.||..+++.||||+|+++|+|+++|||+|+|++... ...|+|+|. .++|.+|+..|..++.+.....
T Consensus 1 g~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~~~~~~~ 79 (174)
T 1j4w_A 1 GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-PDRAQHAAEIITDLLRSVQAGNPG 79 (174)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-HHHHHHHHHHHHHHHHHHC-----
T ss_pred CCeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhcccCCCC
Confidence 3567899999999999999999999999999999999975322 346899997 7999999999999998753210
Q ss_pred ---------------------CCcceEEEEeccccchhhhccHHHHHHHHhcc
Q 012306 179 ---------------------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 210 (466)
Q Consensus 179 ---------------------k~~~ThFIsIPl~~hp~I~~~~~~f~~~Il~~ 210 (466)
....+..+.||-..+..|+|+....++.|.+.
T Consensus 80 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~ 132 (174)
T 1j4w_A 80 GPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQ 132 (174)
T ss_dssp ------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHH
Confidence 00136677899999999999999999999876
No 26
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=8.1e-11 Score=106.56 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=89.6
Q ss_pred CCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhhhC-----
Q 012306 104 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVES----- 177 (466)
Q Consensus 104 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~~----- 177 (466)
......+.||..++|.||||+|+++|+|+++|||+|+|+..+. ...|+|+|. .++|.+|+..|..++.+....
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e~~~~~~~~~ 81 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEEDISSSMTNS 81 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEE-HHHHHHHHHHHHHHHHHHHTSCCCSS
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhhccccCCCC
Confidence 4567899999999999999999999999999999999998654 457999997 789999999999887663221
Q ss_pred ---CCCcceEEEEeccccchhhhccHHHHHHHHhcc
Q 012306 178 ---PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 210 (466)
Q Consensus 178 ---~k~~~ThFIsIPl~~hp~I~~~~~~f~~~Il~~ 210 (466)
+..+.+..+.||-..+..|+|+.+...+.|.+.
T Consensus 82 ~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~ 117 (160)
T 2jzx_A 82 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 117 (160)
T ss_dssp SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHH
Confidence 112457788899999999999999999999876
No 27
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=1e-10 Score=99.75 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=61.3
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 176 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~ 176 (466)
..+.+|.||+++++.||||+|+++|+|+++|+|+|+|+.... +..|+|+|. .+++.+|++.|+.++.+...
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhcccc
Confidence 457899999999999999999999999999999999986443 236999997 89999999999999988554
No 28
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.11 E-value=8.2e-11 Score=99.91 Aligned_cols=69 Identities=25% Similarity=0.253 Sum_probs=61.2
Q ss_pred CCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 104 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 104 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
......+.||..++|.||||+|.++|+|+++|||+|+|+.... ++.|+|+|. .+++.+|+..|+.++.+
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~-~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGT-QKEVAAAKHLILEKVSE 86 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhh
Confidence 3457889999999999999999999999999999999997543 467999997 46899999999999876
No 29
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.10 E-value=6.4e-11 Score=121.27 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=60.6
Q ss_pred CCCceEEEEeccccceeecCCCc--hhHHHHHHHhCcEEEcCCCC--------CCCcEEEEccChhHHHHHHHHHHH
Q 012306 103 AERHSLSVEVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSK--------KEDSIIIEGNSTDSVAKASEKIQA 169 (466)
Q Consensus 103 ~~~~~~~v~Vp~~~~~~IIGk~G--~t~k~iE~eT~~~I~iP~~~--------~~~~I~I~G~~~~~v~~A~~~I~~ 169 (466)
..+++.++.||+.||++|||||| +++++|.+||||+|+||..+ .++.|+|+|. +++|++||.+|+.
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~-~enVE~AR~~I~~ 102 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGY-FGDVDRARMLMRR 102 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEE-HHHHHHHHHHHHH
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcC-HHHHHHHHHHHHh
Confidence 46899999999999999999999 99999999999999999876 2567999997 7999999999975
No 30
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.05 E-value=1.8e-10 Score=106.19 Aligned_cols=108 Identities=22% Similarity=0.232 Sum_probs=89.1
Q ss_pred CCCCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 012306 102 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAV 175 (466)
Q Consensus 102 s~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~~~~~v~~A~~~I~~i~~~~~ 175 (466)
..+++...+.||..++|.||||+|+++++|+++|||+|+|+..++ ...|+|+|. .++|.+|+..|..++.+..
T Consensus 2 l~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 2 LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIREMP 80 (178)
T ss_dssp -CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHTCCC
T ss_pred CCCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHhccC
Confidence 356789999999999999999999999999999999999987542 236899996 7899999999999886531
Q ss_pred hC-----------------CCCcceEEEEeccccchhhhccHHHHHHHHhcc
Q 012306 176 ES-----------------PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 210 (466)
Q Consensus 176 ~~-----------------~k~~~ThFIsIPl~~hp~I~~~~~~f~~~Il~~ 210 (466)
.. +....+..+.||-..+..|+|+....++.|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 81 QNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp CC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred CccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 10 001246778899999999999999999999876
No 31
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=1.6e-10 Score=98.71 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=59.9
Q ss_pred eEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 107 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 107 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
+.++.||.++++.||||+|+++|+|+++|+|+|+|+.... ...|+|+| +.++|.+|+..|+.++.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999987642 25799999 589999999999998876
No 32
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.01 E-value=2.8e-10 Score=103.08 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=85.2
Q ss_pred ceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHHhhhCC--
Q 012306 106 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP-- 178 (466)
Q Consensus 106 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~~~-- 178 (466)
....+.||..++|.||||+|+++|+|+++|||+|+|+..+. ...|+|+|. .++|.+|+..|..++.+.....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGD-PYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEEC-HHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhccCCCCC
Confidence 46789999999999999999999999999999999976432 236899994 7999999999999987633110
Q ss_pred -------CCcceEEEEeccccchhhhccHHHHHHHHhcc
Q 012306 179 -------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 210 (466)
Q Consensus 179 -------k~~~ThFIsIPl~~hp~I~~~~~~f~~~Il~~ 210 (466)
+...+..+.||...+..|+|+....++.|.++
T Consensus 81 ~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~ 119 (164)
T 2jvz_A 81 DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQND 119 (164)
T ss_dssp SCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHH
T ss_pred CccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHH
Confidence 00124667799998999999999999999876
No 33
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.00 E-value=3.4e-10 Score=100.07 Aligned_cols=71 Identities=28% Similarity=0.411 Sum_probs=62.4
Q ss_pred CCCceEEEEeccc------cceeecCCCchhHHHHHHHhCcEEEcCCCCC-------------------CCcEEEEccCh
Q 012306 103 AERHSLSVEVGAS------VIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-------------------EDSIIIEGNST 157 (466)
Q Consensus 103 ~~~~~~~v~Vp~~------~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-------------------~~~I~I~G~~~ 157 (466)
..+++..|.||.. |+|.|||++|.|+|+||+||||+|.|...|+ ...|.|+|.+.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 3578899999988 8889999999999999999999999976432 45799999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 012306 158 DSVAKASEKIQAIIAE 173 (466)
Q Consensus 158 ~~v~~A~~~I~~i~~~ 173 (466)
+.+.+|++.|+.|+..
T Consensus 84 e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999865
No 34
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.92 E-value=1.8e-09 Score=98.00 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=64.4
Q ss_pred CCCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC---CC--cEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012306 103 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---ED--SIIIEGNSTDSVAKASEKIQAIIAEAVE 176 (466)
Q Consensus 103 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~--~I~I~G~~~~~v~~A~~~I~~i~~~~~~ 176 (466)
.......+.||..++|.|||++|.++++|+++|||+|+||..+. .+ .|+|+| +.++|..|+..|+.++.++.+
T Consensus 82 ~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 82 EVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIG-HFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHHHHH
Confidence 34567799999999999999999999999999999999997643 22 589999 489999999999999999776
No 35
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=2.8e-09 Score=92.66 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=59.6
Q ss_pred ceEEEEeccc-------cceeecCCCchhHHHHHHHhCcEEEcCCCC-------------CCCcEEEEccChhHHHHHHH
Q 012306 106 HSLSVEVGAS-------VIRFIKGKEGSTQKKFEKEMGVKIILPSSK-------------KEDSIIIEGNSTDSVAKASE 165 (466)
Q Consensus 106 ~~~~v~Vp~~-------~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~-------------~~~~I~I~G~~~~~v~~A~~ 165 (466)
.+..|.||.+ +++.|||++|.|+|+|++||||+|.|-.++ +...|.|++.+.+.+.+|++
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 4556777754 889999999999999999999999996443 23579999999999999999
Q ss_pred HHHHHHHHhhh
Q 012306 166 KIQAIIAEAVE 176 (466)
Q Consensus 166 ~I~~i~~~~~~ 176 (466)
.|+.|+.....
T Consensus 92 ~Ie~Ll~~v~~ 102 (119)
T 2yqr_A 92 LCENLLQTVHA 102 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhchHH
Confidence 99999987443
No 36
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.85 E-value=1.9e-09 Score=97.61 Aligned_cols=70 Identities=21% Similarity=0.336 Sum_probs=62.2
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAV 175 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~~~~~v~~A~~~I~~i~~~~~ 175 (466)
..+..+.||..++++|||++|.++++|+++|||+|+|+.... .+.|+|+|. .++|..|+..|+.++.++.
T Consensus 90 ~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 90 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp SSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC-HHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC-HHHHHHHHHHHHHHHhhhh
Confidence 356789999999999999999999999999999999987644 357999997 7999999999999998743
No 37
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.81 E-value=1.7e-09 Score=89.64 Aligned_cols=67 Identities=25% Similarity=0.287 Sum_probs=59.9
Q ss_pred CCCCceEEEEeccccceeecCCCchhHHHHHHHhCcE-EEcCCCCCCCcEEEEccChhHHHHHHHHHHHH
Q 012306 102 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVK-IILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 170 (466)
Q Consensus 102 s~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~-I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i 170 (466)
....+..++.||++++|.+||++|.++|+|.++||++ |.|-. +.+.|.|.|.+.+++.+|+..|+.+
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999998 99953 3488999998899999999999533
No 38
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.79 E-value=3.7e-09 Score=108.31 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=58.3
Q ss_pred CCCCCCCceEEEEeccccceeecCCCc--hhHHHHHHHhCcEEEcCCCCC-------CCcEEEEccChhHHHHHHHHHHH
Q 012306 99 PVPSAERHSLSVEVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSKK-------EDSIIIEGNSTDSVAKASEKIQA 169 (466)
Q Consensus 99 ~~~s~~~~~~~v~Vp~~~~~~IIGk~G--~t~k~iE~eT~~~I~iP~~~~-------~~~I~I~G~~~~~v~~A~~~I~~ 169 (466)
...+...++.++.|++.+|++|||++| .++++|.++|||+|+||+.++ ...|+|+|. +++|..|+++|+.
T Consensus 179 e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs-~e~V~~Ark~I~~ 257 (376)
T 3n89_A 179 SPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGN-IDNVLKARRYIMD 257 (376)
T ss_dssp -CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESC-HHHHHHHHHHHHH
T ss_pred hcccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeC-HHHHHHHHHHHHh
Confidence 344567899999999999999999999 667999999999999998654 246999995 8999999999964
Q ss_pred H
Q 012306 170 I 170 (466)
Q Consensus 170 i 170 (466)
+
T Consensus 258 l 258 (376)
T 3n89_A 258 L 258 (376)
T ss_dssp T
T ss_pred h
Confidence 3
No 39
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.78 E-value=5.3e-09 Score=94.53 Aligned_cols=69 Identities=23% Similarity=0.336 Sum_probs=61.1
Q ss_pred CCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCC---C-CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 104 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK---K-EDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 104 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~---~-~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
......+.||..++|.|||++|.++++|+++|||+|+|++.. . ++.|+|+| +.++|.+|+..|..++.+
T Consensus 87 ~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 87 PPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp CSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999999999998632 2 46799999 489999999999988765
No 40
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.72 E-value=8e-09 Score=95.02 Aligned_cols=69 Identities=25% Similarity=0.319 Sum_probs=61.2
Q ss_pred CCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 104 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 104 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
......+.||..++|.||||+|.++|+|+++|||+|+|+.... ...|+|+|. .++|.+|+..|..++.+
T Consensus 102 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 102 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGE-PEQNRKAVELIIQKIQE 175 (178)
T ss_dssp GGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESS-HHHHHHHHHHHHHHHHS
T ss_pred CceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999999999999987632 357999997 58999999999998875
No 41
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.68 E-value=1.1e-08 Score=93.88 Aligned_cols=66 Identities=23% Similarity=0.306 Sum_probs=57.5
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHH
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAII 171 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~~~~~v~~A~~~I~~i~ 171 (466)
.....+.||..+++.||||+|.++|+|+++|||+|+|+.... ...|+|+| +.++|..|+..|+.++
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999999999987531 35799999 5899999999998753
No 42
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.55 E-value=4.6e-08 Score=87.63 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=57.5
Q ss_pred EEEEeccccceeecCCCchhHHHHHHHhCc-EEEcCCCCCC------C--cEEEEccChhHHHHHHHHHHHHHHH
Q 012306 108 LSVEVGASVIRFIKGKEGSTQKKFEKEMGV-KIILPSSKKE------D--SIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 108 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~-~I~iP~~~~~------~--~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
..+.||...++.+|||+|.++|.|.+.||+ +|+|++..+. + .|+|+|. +++|+.|+..|+.++.+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~-~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGT-KDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEE-HHHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999996 9999875432 2 3889996 79999999999988865
No 43
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.52 E-value=7.4e-08 Score=85.87 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=51.0
Q ss_pred eEEEEecc------ccceeecCCCchhHHHHHHHhCcEEEcCCCCCC---------------------CcEEEEccChh-
Q 012306 107 SLSVEVGA------SVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKE---------------------DSIIIEGNSTD- 158 (466)
Q Consensus 107 ~~~v~Vp~------~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~---------------------~~I~I~G~~~~- 158 (466)
+..|.||. .|+|.|||++|.|+|+||++|||+|.|-.+|+- -.|.|+|.+.+
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 34566664 568999999999999999999999999887631 16889997554
Q ss_pred ----HHHHHHHHHHHHH
Q 012306 159 ----SVAKASEKIQAII 171 (466)
Q Consensus 159 ----~v~~A~~~I~~i~ 171 (466)
.+.+|++.|+.++
T Consensus 83 ~~~~~l~~A~~~I~~lL 99 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLL 99 (140)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHC
Confidence 6778888776655
No 44
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.37 E-value=3.5e-07 Score=87.44 Aligned_cols=63 Identities=29% Similarity=0.327 Sum_probs=57.9
Q ss_pred eEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccC----hhHHHHHHHHHHHHH
Q 012306 107 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNS----TDSVAKASEKIQAII 171 (466)
Q Consensus 107 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~----~~~v~~A~~~I~~i~ 171 (466)
...+.||+..++.|||++|.+++.|+++|||+|+|.. +++.|.|.|.+ ++++++|++.|.+|+
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--ETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--TTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--CCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999985 35789999965 799999999999998
No 45
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.13 E-value=9.6e-07 Score=96.29 Aligned_cols=64 Identities=23% Similarity=0.233 Sum_probs=57.5
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHH
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 171 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i~ 171 (466)
--..+++||++.++.|||+||.++|+|+++|||+|+|- +++.|.|.|.+.+.+++|++.|+.|+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~---d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV---DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC---SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc---CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 34788999999999999999999999999999999997 35899999998999999999998775
No 46
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.01 E-value=2.9e-06 Score=75.86 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=73.8
Q ss_pred CCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHHhhhCCCCcce
Q 012306 104 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYS 183 (466)
Q Consensus 104 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~~~k~~~T 183 (466)
.+++.++.||..++|.+||++|+++++|++|+|+.|...+. +...+++.|.+++.|.+|+..+ . - .+
T Consensus 2 ~~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~-~~~~~i~~~~~p~~v~~~~~~l-----~--~-----~e 68 (144)
T 2qnd_A 2 SRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE-DTCTFHIYGEDQDAVKKARSFL-----E--F-----AE 68 (144)
T ss_dssp --CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET-TTTEEEEEESSHHHHHHHHHHH-----C--E-----EE
T ss_pred CceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC-CchheeeccCCHHHHHHHHHhh-----h--c-----ce
Confidence 46788999999999999999999999999999955444432 3456788887788898887632 1 1 14
Q ss_pred EEEEeccccchhhhccHHHHHHHHhcc
Q 012306 184 HFVSLPLAVHPELVDKLVNFQNTILGI 210 (466)
Q Consensus 184 hFIsIPl~~hp~I~~~~~~f~~~Il~~ 210 (466)
..+.+|-..+..++|+.+...+.+.+.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~ 95 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDK 95 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHH
Confidence 667799998999999999999988765
No 47
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.91 E-value=9.4e-06 Score=77.54 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=48.3
Q ss_pred cceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 116 VIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 116 ~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
..|.||||+|.|++.||+.|||+|.|+. ..|.|.|. .+++..|++.|..++..
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~----~~v~i~G~-~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG----KTVAIIGN-PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET----TEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC----eEEEEEeC-HHHHHHHHHHHHHHHcC
Confidence 5788999999999999999999999974 57999996 78999999999999965
No 48
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.73 E-value=3.7e-05 Score=71.91 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=57.0
Q ss_pred ceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEc----cChhHHHHHHHHHHHHHH
Q 012306 106 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEG----NSTDSVAKASEKIQAIIA 172 (466)
Q Consensus 106 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G----~~~~~v~~A~~~I~~i~~ 172 (466)
....+.||+...+.|||++|++++.|++.+|++|+|.. .++.|+|+. .++..+.+|++-|.+|..
T Consensus 4 ~~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 4 PRIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--ENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp CCEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--TTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred cceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 34689999999999999999999999999999999965 367788871 357899999999999986
No 49
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.56 E-value=4.4e-05 Score=71.42 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=48.6
Q ss_pred ccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 115 SVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 115 ~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
...|.|||++|.|++.||+-|||+|.|.. ..|.|.|. .+++..|++.|..++..
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~----~~v~i~G~-~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGE----YEVAIIGD-YERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECS----SEEEEEEE-HHHHHHHHHHHHHHHTT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcC----CEEEEEeC-hHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999975 47999996 68999999999999854
No 50
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.42 E-value=2.7e-05 Score=86.04 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=14.0
Q ss_pred ceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 106 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 106 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
-..++.||++.++-|||+||.++|+|.++||++|+|- +.+.|.|.+.+++.+.+|+++|+.|..+
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~---ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN---DDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp C----------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE---CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999996 3588999999999999999999988865
No 51
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.93 E-value=0.0015 Score=57.41 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=58.7
Q ss_pred eEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCC--CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 012306 107 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 176 (466)
Q Consensus 107 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~--~~~I~I~G~~~~~v~~A~~~I~~i~~~~~~ 176 (466)
-..+.|...+.+.|+|++|+.|+.||..+++.|++-+-+. ...|+|.|+ ...-.+|+..|+.+.+--|+
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~-~~~Q~rak~MI~sLA~~hr~ 127 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGP-PPFRRDVDRMLTDLAHYCRM 127 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECC-HHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999987655 457999996 56778888888888776444
No 52
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=96.39 E-value=0.0079 Score=58.11 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=85.4
Q ss_pred cccCCCcceEEeeccccCC-------------HHHHHHHHHHHHHhhHHhhhhcCCCCeEEEEcccccCCCCCCCceEEE
Q 012306 287 IFIKPKTFHLTVLMLKLWN-------------KDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILY 353 (466)
Q Consensus 287 ~~v~p~~LHLTL~fLgl~~-------------~eei~~a~~~L~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~~rVLy 353 (466)
.|+||+.+|+||.=+-... +..++.+.+++.+- +...-...||.+.+.|+. +. -|..
T Consensus 76 ~~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d~~l~~~~~~~~~~---l~~~~~~~p~~~~v~~l~--~~-----~v~L 145 (243)
T 2fsq_A 76 AFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRDR---LSTFPTLPAFNMRVTGLR--PV-----GMVM 145 (243)
T ss_dssp EECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHHHHH---GGGCCCCCCCCEEEEEEE--TT-----EEEE
T ss_pred eeCCchhhhhhhccccccccccCCCCCccCcccchHHHHHHHHHHH---HhcccCCCCeEEEEeccc--cc-----eEEE
Confidence 4999999999997643311 34566655555432 222222378999999993 22 4665
Q ss_pred EeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEEeeeecccccccCCCccccccHHHHHHHhCC---Cccc
Q 012306 354 APVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGS---KEWG 430 (466)
Q Consensus 354 a~V~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~d~~r~fkPHiTLar~~~~~~~~~~~~~~~fda~~il~~~~~---~~fG 430 (466)
++..+ .+..+|.++.+.|.+ ..||...+ ...|+.||||+....+... ...-....+++++.. -.++
T Consensus 146 ~Pade-~~~~~L~~~R~~l~q---~lGi~~p~--hd~y~fHITLgY~~~~l~~-----ee~~~~~~~l~~~~~~l~~~~p 214 (243)
T 2fsq_A 146 KGATA-EDDSIVALWRDTFAD---FFGYRHPD--HDTYEFHITLSYIVSWFEP-----ECLPRWQAMLDEELEKLRVAAP 214 (243)
T ss_dssp EESSH-HHHHHHHHHHHHHHH---HHTCCCTT--GGGCCEEEECEEESSCBCG-----GGHHHHHHHHHHHHHHHHHHCS
T ss_pred ecCCH-HHHHHHHHHHHHHHH---HhCCCCCC--CcceEEEEEEEeccCCCCH-----HHHHHHHHHHHHHHHHHHhhCC
Confidence 56654 345677777777666 45887642 5689999999987643221 000112233333322 1234
Q ss_pred cEEecEEEEEeeeccCCCCceeEEEEEeC
Q 012306 431 EYLIKEAHLSQRFVYDESGFYHCCASIPF 459 (466)
Q Consensus 431 ~~~V~eI~Ls~~~~~~~~g~Y~~l~si~L 459 (466)
.+.+..+.+|.-..- -.|.++..+.+
T Consensus 215 ~i~l~~~efc~F~DM---~~F~~~~~l~~ 240 (243)
T 2fsq_A 215 VIQMRPPAFCEFKDM---NHFKELVVFDK 240 (243)
T ss_dssp SCCBCCCEEEEESST---TCCEEEEECC-
T ss_pred eeeecCcceEEeCCh---hhhHHHHhccc
Confidence 557888888875321 24455544443
No 53
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.14 E-value=0.0036 Score=69.32 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=0.0
Q ss_pred ceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 106 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 106 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
-..++.||+..++-+||+||.+++.|.++||+.|+|-. .+.|.|.+.+.+.+.+|+++|+.+..+
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp --------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 35678899999999999999999999999999999864 578999998788889998888776543
No 54
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.73 E-value=0.0015 Score=72.70 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=23.7
Q ss_pred eEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHH
Q 012306 107 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 171 (466)
Q Consensus 107 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i~ 171 (466)
..++.||++.++-+||++|.++|+|.++||+.|+|-. .+.|.|.+.+.....+|+++|+.|.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC-----------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3578899999999999999999999999999999973 5789999988888888888876654
No 55
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=81.54 E-value=2.6 Score=40.06 Aligned_cols=63 Identities=25% Similarity=0.271 Sum_probs=54.2
Q ss_pred EEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 108 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 108 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
.-+.|+..+.+.++|++|..+..|.+.++|.|.+ |.++-|.|.+.+...+..+...|+.+-.+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~v---G~NG~IWi~~~~~~~~~~~~~ai~~~e~~ 212 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFV---ARNGRIHLECPNEDLEAIAVMAIKIIDEE 212 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEE---ETTTEEEEECSCHHHHHHHHHHHHHHHHC
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE---eCCCEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 5778999999999999999999999999999998 34789999998777888888777666544
No 56
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=76.63 E-value=2.6 Score=39.96 Aligned_cols=62 Identities=27% Similarity=0.389 Sum_probs=50.6
Q ss_pred EEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 012306 108 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 173 (466)
Q Consensus 108 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i~~~ 173 (466)
.-+.++..+.+.++|++|..+..|.+.++|.|.+ |.++-|.|.+.+ .....+...|+.+-.+
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~-~~~~~~~~ai~~~e~~ 199 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVV---GQNGLIWVNGDR-RKVSIAEEAIYLIEQE 199 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEE---CTTSEEEEESCH-HHHHHHHHHHHHHHHC
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEE---ECCcEEEEeCCc-hhHHHHHHHHHHHHhh
Confidence 5678999999999999999999999999999998 467899999863 4666666666555443
No 57
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=73.21 E-value=2.6 Score=38.41 Aligned_cols=59 Identities=8% Similarity=0.088 Sum_probs=49.0
Q ss_pred EEEEeccccceeecCCCch-hHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHH
Q 012306 108 LSVEVGASVIRFIKGKEGS-TQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQA 169 (466)
Q Consensus 108 ~~v~Vp~~~~~~IIGk~G~-t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~ 169 (466)
.-++||..+.+.++|++|. .++.|.+.+++.|.+= .+|-|.|.+.+...+..+...|+.
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG---~NG~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIG---LNGKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEE---TTTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEE---CCcEEEEecCCHHHHHHHHHHHHH
Confidence 3689999999999999888 9999999999999983 478999999876666666566654
No 58
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=69.19 E-value=2.5 Score=37.35 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=33.9
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcC
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 142 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP 142 (466)
.-.+.+-|+....|..||++|+.++.|.+++|-+|+|=
T Consensus 35 ~dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 35 NNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp GTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CCEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 45677888888999999999999999999999999873
No 59
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=67.12 E-value=1 Score=39.93 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=35.2
Q ss_pred CCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcC
Q 012306 104 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 142 (466)
Q Consensus 104 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP 142 (466)
+.....+.||..-.+..|||+|.+.+-..+=||.+|+|-
T Consensus 101 ~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 101 GVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp TEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred CcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 456788999999999999999999999999999988773
No 60
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=58.52 E-value=2.6 Score=41.48 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=48.8
Q ss_pred EEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHH
Q 012306 108 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQA 169 (466)
Q Consensus 108 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~ 169 (466)
.-++||..+.+.++|+++..++.|.+.+++.|.+ |.++-|.|.+.+......+...|+.
T Consensus 212 ~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~v---G~NG~IWI~~~~~~~~~~i~~aI~~ 270 (289)
T 2nn6_G 212 LLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVF---GMNGRIWVKAKTIQQTLILANILEA 270 (289)
T ss_dssp EEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEE---ETTTEEEECCSSHHHHHHHHHHHHH
T ss_pred EEEEEChHHhhhhhcCchhHHHHhcccCCeEEEE---ECCcEEEEecCChhHHHHHHHHHHH
Confidence 3689999999999999999999999899999987 3478999999776666666665643
No 61
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=57.25 E-value=1.4 Score=42.52 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=42.0
Q ss_pred EEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHH
Q 012306 108 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 170 (466)
Q Consensus 108 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~~~~~v~~A~~~I~~i 170 (466)
.-+.++..+.+.++|++|..+..|.+.++|.|.+ |.++-|.|.+.+...+..+...|+.+
T Consensus 157 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~~~~~~~~~~aI~~~ 216 (251)
T 2je6_I 157 IVIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFV---ANNGRIWATCPSRFSEEILIEAIRKI 216 (251)
T ss_dssp CEEECCGGGHHHHHCGGGHHHHHHHTTC---CEE---CTTSEEEC-----CTTCCTHHHHTTT
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE---ECCcEEEEeCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999988 45789999986555555555555433
No 62
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=52.41 E-value=8.6 Score=37.02 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=36.4
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCCC
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSS 144 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~ 144 (466)
.....+.||....+.-|||+|.+.|.--+=||.+|+|-+.
T Consensus 183 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 183 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred CcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 3578999999999999999999999999999999999553
No 63
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=52.32 E-value=0.17 Score=42.25 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=41.8
Q ss_pred EEccChhHHHHHHHHHHHHHHHhhhCCCCcceEEEEeccccchhhhccHHHHHHHHhcc
Q 012306 152 IEGNSTDSVAKASEKIQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 210 (466)
Q Consensus 152 I~G~~~~~v~~A~~~I~~i~~~~~~~~k~~~ThFIsIPl~~hp~I~~~~~~f~~~Il~~ 210 (466)
|+|+ +++|..|+..|..++.+ . .|.-+.||-.+|.+|+|+....+++|.++
T Consensus 5 i~G~-~~~V~~A~~~i~~~~~~------~-~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~ 55 (102)
T 2ctf_A 5 SSGE-PEKLGQALTEVYAKANS------F-TVSSVAAPSWLHRFIIGKKGQNLAKITQQ 55 (102)
T ss_dssp CCCC-CCCCCCSCCCCCCCCCC------C-EEEEEECCSTTHHHHHTTTTCHHHHHHHH
T ss_pred cCcC-HHHHHHHHHHHHHHhcC------e-EEEEEEeCHHHHhhhcCCCCccHHHHHHH
Confidence 5775 57888898888755532 2 57888899999999999999999999886
No 64
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=47.49 E-value=10 Score=38.11 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=36.6
Q ss_pred CCceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCC
Q 012306 104 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPS 143 (466)
Q Consensus 104 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~ 143 (466)
......+.||....+.-|||+|.+.|.--+=||.+|+|-+
T Consensus 301 ~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 301 ENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 3568899999999999999999999999999999999843
No 65
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=44.82 E-value=13 Score=37.73 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=36.3
Q ss_pred CceEEEEeccccceeecCCCchhHHHHHHHhCcEEEcCC
Q 012306 105 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPS 143 (466)
Q Consensus 105 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~ 143 (466)
.....+.||..-.+..|||+|.+.+-.-+=||.+|+|-+
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 567899999999999999999999999999999999954
No 66
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=42.63 E-value=11 Score=33.56 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=25.8
Q ss_pred eEEEEeccccceeecCCCchhHHHHHHHhC
Q 012306 107 SLSVEVGASVIRFIKGKEGSTQKKFEKEMG 136 (466)
Q Consensus 107 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~ 136 (466)
.+.+.|.-+-.|.||||.|.|+..|+-=++
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 567788888999999999999999887663
No 67
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=42.08 E-value=36 Score=30.45 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=27.3
Q ss_pred CCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEEe
Q 012306 345 SKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATL 397 (466)
Q Consensus 345 dp~~~rVLya~V~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~d~~r~fkPHiTL 397 (466)
.+...+-+|+-+ +.+-...|.++.+.+...+ |. .++.|||||
T Consensus 4 ~~~~~~~f~~~p-p~~~~~~l~~~~~~l~~~~---~~-------~~~~~HiTL 45 (189)
T 1jh6_A 4 VKKDVYSVWALP-DEESEPRFKKLMEALRSEF---TG-------PRFVPHVTV 45 (189)
T ss_dssp CCCEEEEEEEEE-CTTTHHHHHHHHHHHHHHH---TC-------CCCCCCEEE
T ss_pred CCCCcEEEEEEC-CHHHHHHHHHHHHHHHHHc---CC-------CCCCCEEEE
Confidence 345557788876 4344566777777775543 22 358999999
No 68
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=39.21 E-value=12 Score=31.59 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=36.0
Q ss_pred CCCchhHHHHHHHhCcEEEcCCC-------------------CCCCcEEEEcc----ChhHHHHHHHHHHHHHHHhhh
Q 012306 122 GKEGSTQKKFEKEMGVKIILPSS-------------------KKEDSIIIEGN----STDSVAKASEKIQAIIAEAVE 176 (466)
Q Consensus 122 Gk~G~t~k~iE~eT~~~I~iP~~-------------------~~~~~I~I~G~----~~~~v~~A~~~I~~i~~~~~~ 176 (466)
|+||.+.++-+..-..++++|.. ..++.|+|+.. ...+.+.|.+++..++.++..
T Consensus 31 GpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 108 (112)
T 1j26_A 31 GPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEASG 108 (112)
T ss_dssp CSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHHHHHHHHHHHHHHHHhhc
Confidence 77777776653322223355542 11456888872 357899999999999998665
No 69
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=34.10 E-value=36 Score=28.39 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=36.4
Q ss_pred CCCchhHHHHHHHhCcEEE-------cCC------------C-CCCCcEEEEcc----ChhHHHHHHHHHHHHHHHhhhC
Q 012306 122 GKEGSTQKKFEKEMGVKII-------LPS------------S-KKEDSIIIEGN----STDSVAKASEKIQAIIAEAVES 177 (466)
Q Consensus 122 Gk~G~t~k~iE~eT~~~I~-------iP~------------~-~~~~~I~I~G~----~~~~v~~A~~~I~~i~~~~~~~ 177 (466)
|+||...++- +|.++|. +|. . ..+|.|+|+.. ...+.+.|.+++..++.++...
T Consensus 24 GpGGQnVNKv--~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~~ 101 (108)
T 2jva_A 24 GAGGQNVNKV--SSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRADALLRLSELIVNAAKL 101 (108)
T ss_dssp TCSSSSSCCC--CCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCC--cceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHccC
Confidence 7777777664 4555555 340 0 01355888772 3478999999999999997763
No 70
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=34.05 E-value=63 Score=28.16 Aligned_cols=81 Identities=6% Similarity=0.008 Sum_probs=50.6
Q ss_pred cccCCHHHHHHHHHHHHHhhHHhhhhcCCCCeEEEEcccccC----------CCCCCCceEEEEeee-ccCChhHHHHHH
Q 012306 301 LKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAPVE-EIGDGDRLLHAC 369 (466)
Q Consensus 301 Lgl~~~eei~~a~~~L~~i~~~i~~~L~~~pf~L~l~GLg~F----------~~dp~~~rVLya~V~-~~~~~~~L~~L~ 369 (466)
|..+++++.......+..+...+.+.+....+.+..-|-..| .+|+..+..+|.... ..-+.+.|.+++
T Consensus 47 l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~aGq~V~HlH~HvIPR~~~D~~~~~~vw~~~~~~~~~~eel~~~a 126 (149)
T 3i24_A 47 IHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLV 126 (149)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCSTTCSCCCBCCHHHHHHHH
T ss_pred hhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhhhhCCCCEEEEEEeCCccCCCCCCcceecCCCCCCCCHHHHHHHH
Confidence 456677887777777777776666665555566655454443 234444445554211 112357899999
Q ss_pred HHHHHHHHHCCC
Q 012306 370 QVIIDAFNEAGL 381 (466)
Q Consensus 370 ~~L~~~f~~~Gl 381 (466)
+.|+++|...|.
T Consensus 127 ~kIr~~L~~~~~ 138 (149)
T 3i24_A 127 DLLRDKLSNISG 138 (149)
T ss_dssp HHHHHHHTTSTT
T ss_pred HHHHHHHHhccc
Confidence 999999977554
No 71
>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, phospho lyase, secreted, virulence, structural genomics; 2.70A {Shigella flexneri}
Probab=33.43 E-value=2e+02 Score=26.56 Aligned_cols=89 Identities=10% Similarity=0.237 Sum_probs=54.4
Q ss_pred CcceEEeeccccCCHHHHHHHHHHHHHhhHHhhhhcCCCCe-EEEEcccccCCCCCCCce-------EEEEeeeccCC--
Q 012306 292 KTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPL-FIRLKGLDLMRGSKDKAR-------ILYAPVEEIGD-- 361 (466)
Q Consensus 292 ~~LHLTL~fLgl~~~eei~~a~~~L~~i~~~i~~~L~~~pf-~L~l~GLg~F~~dp~~~r-------VLya~V~~~~~-- 361 (466)
+++||.+ ..++|..|-++|..+.. . ...|+ +-++..+..-. .+.| .||+++...+.
T Consensus 80 DK~HiSV------~~~qv~~AF~ai~~LL~--S---eDSPvDKWKVTDM~rv~---~qsRV~~GAQfTLY~Kpd~eds~Y 145 (218)
T 3i0u_A 80 DKFHISI------AREQVPLAFQILSGLLF--S---EDSPIDKWKITDMNRVS---QQSRVGIGAQFTLYVKSDQECSQY 145 (218)
T ss_dssp EEEEECB------CGGGHHHHHHHHHHHHT--C---TTCSCSEEEEECTTTCC-------CCSSCCEEEEEECCSSTTCC
T ss_pred ceEEEEe------cHHHHHHHHHHHHHHhc--C---CCCCcceeeecccccCc---chhhhcccceEEEEecCccccccC
Confidence 6789865 47899999999988731 1 12333 33444444332 2334 49999876442
Q ss_pred ----hhHHHHHHHHHHHHHHHCCCccccCCCCCceee
Q 012306 362 ----GDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLH 394 (466)
Q Consensus 362 ----~~~L~~L~~~L~~~f~~~Gl~~e~d~~r~fkPH 394 (466)
..+...+...|+..|..+|+.+.+.....+.|+
T Consensus 146 s~~~l~k~r~fi~~iE~~L~~agi~pg~~P~SDV~p~ 182 (218)
T 3i0u_A 146 SALLLHKIRQFIMCLESNLLRSKIAPGEYPASDVRPE 182 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTCBCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCcc
Confidence 335666788899999999999753222234443
No 72
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=33.12 E-value=1.2e+02 Score=25.86 Aligned_cols=63 Identities=13% Similarity=0.239 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhhHHhhhhcCCCCeEEEEcccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 012306 306 KDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 383 (466)
Q Consensus 306 ~eei~~a~~~L~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~~rVLya~V~~~~~~~~L~~L~~~L~~~f~~~Gl~~ 383 (466)
.+-+..+.++|.+-+ ...-..|.++|+..+-+ -.+-+ ...+...++.+++.|.+.+.+.|+.+
T Consensus 4 ~~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D-----yfVIa---tg~S~rqv~Aiad~v~~~lk~~g~~~ 66 (125)
T 2o5a_A 4 QELLQLAVNAVDDKK-------AEQVVALNMKGISLIAD-----FFLIC---HGNSEKQVQAIAHELKKVAQEQGIEI 66 (125)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEECBTTBC--C-----EEEEE---EESSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcC-------CCCeEEEEcCCCCcccC-----EEEEE---EcCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 344555566665543 12345678899998886 33333 32346789999999999999988764
No 73
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=32.92 E-value=54 Score=28.61 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=40.8
Q ss_pred cCCCchhHHHHHHHhCcEEE-------cCC---------CC----CCCcEEEEcc----ChhHHHHHHHHHHHHHHHhhh
Q 012306 121 KGKEGSTQKKFEKEMGVKII-------LPS---------SK----KEDSIIIEGN----STDSVAKASEKIQAIIAEAVE 176 (466)
Q Consensus 121 IGk~G~t~k~iE~eT~~~I~-------iP~---------~~----~~~~I~I~G~----~~~~v~~A~~~I~~i~~~~~~ 176 (466)
=|+||.+.++- +|.++|. ||. .+ .+|.|+|+.. ...+-+.|.+++..++.++..
T Consensus 23 sGpGGQnVNKv--~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a~~ 100 (140)
T 4dh9_Y 23 QGAGGQHVNKT--STAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTT 100 (140)
T ss_dssp CSSSSHHHHTT--CCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCccccc--cceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 48999999875 6777777 453 00 1356888772 347899999999999999876
Q ss_pred CC
Q 012306 177 SP 178 (466)
Q Consensus 177 ~~ 178 (466)
.|
T Consensus 101 ~p 102 (140)
T 4dh9_Y 101 EK 102 (140)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 74
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=32.43 E-value=15 Score=29.71 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=22.2
Q ss_pred eEEEEeccccceeecCCCchhHHHHHHHhC
Q 012306 107 SLSVEVGASVIRFIKGKEGSTQKKFEKEMG 136 (466)
Q Consensus 107 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~ 136 (466)
.+.|.|-..+-+.|||++|..+++|..+..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~ 65 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAVVQ 65 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHHHH
Confidence 456666677789999999997777655443
No 75
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=31.54 E-value=37 Score=32.34 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=26.2
Q ss_pred cCCCcceEEeeccccC-CHHHHHHHHHHHHHhhHHhhh
Q 012306 289 IKPKTFHLTVLMLKLW-NKDRVNAATNVLKSISSKVMD 325 (466)
Q Consensus 289 v~p~~LHLTL~fLgl~-~~eei~~a~~~L~~i~~~i~~ 325 (466)
...-++||||++++.+ ++++......+|+++.+.+..
T Consensus 174 hd~y~fHITLgY~~~~l~~ee~~~~~~~l~~~~~~l~~ 211 (243)
T 2fsq_A 174 HDTYEFHITLSYIVSWFEPECLPRWQAMLDEELEKLRV 211 (243)
T ss_dssp GGGCCEEEECEEESSCBCGGGHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3466899999999854 456666677777777665543
No 76
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=30.76 E-value=2.1e+02 Score=27.23 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhHHhhh---hcCCCCeEEEEcccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 012306 308 RVNAATNVLKSISSKVMD---ALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 383 (466)
Q Consensus 308 ei~~a~~~L~~i~~~i~~---~L~~~pf~L~l~GLg~F~~dp~~~rVLya~V~~~~~~~~L~~L~~~L~~~f~~~Gl~~ 383 (466)
+++++.+.|+++.+.+.+ .+..+|..+.+.+++-.. =..+ +|+-+.+.+....-.++...+.++|.+.|+..
T Consensus 193 d~~~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~~~~~s~---i~~~-v~~~~~~~~~~~~~~~l~~~I~~~f~~~gI~i 267 (285)
T 3udc_A 193 DVDKIIEGLQEICEEVKKSRDDLIEGPTVLGITDMQDSK---LVIM-VYAKTQPMQKWAVERDIRYRVKKMFDQKNISF 267 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSSBSSCCEEEEEEEEETTE---EEEE-EEEEESTTCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHhcccccccCcccccccccCCCE---EEEE-EEEEECcchHHHHHHHHHHHHHHHHHHCCCcC
Confidence 344555555554333322 222355556666554321 1112 23344433323334578889999999999987
No 77
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=29.91 E-value=1.5e+02 Score=25.37 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhHHhhhhcCCCCeEEEEcccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 012306 308 RVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 383 (466)
Q Consensus 308 ei~~a~~~L~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~~rVLya~V~~~~~~~~L~~L~~~L~~~f~~~Gl~~ 383 (466)
-+..+.++|.+-+ ...-..|.++|+..+-+ |.=+....+...++.+++.|.+.+.+.|+.+
T Consensus 6 l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIaTg~S~rqv~Aiad~v~~~lk~~g~~~ 66 (130)
T 2id1_A 6 ISKLAIEALEDIK-------GKDIIELDTSKLTSLFQ--------RMIVATGDSNRQVKALANSVQVKLKEAGVDI 66 (130)
T ss_dssp HHHHHHHHHHHTT-------CEEEEEEEGGGTCSSCS--------EEEEEECSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcC-------CCCeEEEEcCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcC
Confidence 3444555555443 22345678899998887 3333333346789999999999999998865
No 78
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.96 E-value=33 Score=33.13 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=26.6
Q ss_pred CceEEEEecccc-ceeecCCCchhHHH--------HHHHhCcEEEc
Q 012306 105 RHSLSVEVGASV-IRFIKGKEGSTQKK--------FEKEMGVKIIL 141 (466)
Q Consensus 105 ~~~~~v~Vp~~~-~~~IIGk~G~t~k~--------iE~eT~~~I~i 141 (466)
.....+.|..+- -+.|||++|+++|+ ||+-+++++.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 456777788764 46689999999987 55556666655
No 79
>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A*
Probab=25.88 E-value=1.9e+02 Score=26.77 Aligned_cols=91 Identities=14% Similarity=0.255 Sum_probs=56.8
Q ss_pred CCCcceEEeeccccCCHHHHHHHHHHHHHhhHHhhhhcCCCCe-EEEEcccccCCCCCCCce-------EEEEeeeccCC
Q 012306 290 KPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPL-FIRLKGLDLMRGSKDKAR-------ILYAPVEEIGD 361 (466)
Q Consensus 290 ~p~~LHLTL~fLgl~~~eei~~a~~~L~~i~~~i~~~L~~~pf-~L~l~GLg~F~~dp~~~r-------VLya~V~~~~~ 361 (466)
--+++||.+ ..++|..|-++|..+.. . ...|+ +-++..+..-. .+.| .||+++...+.
T Consensus 80 aGDKfHiSV------~~~qv~~AF~al~~LL~--S---eDSPvDKWKVTDM~rv~---~qsRV~~GAQfTLY~Kpd~eds 145 (220)
T 3bo6_A 80 AGDKFHISV------QREQVPQAFQALSGLLF--S---VDSPIDKWKVTDMERVD---QQSRVAVGAQFTLYVKPDQENS 145 (220)
T ss_dssp CSEEEEECB------CGGGHHHHHHHHHHHHT--C---TTCSCSEEEEECTTTBC---TTSTTTSSCCEEEECCCSSTTS
T ss_pred cCceEEEEe------cHHHHHHHHHHHHHhhc--C---CCCCcceeeeccccccc---hhhhhcccceEEEEecCccccc
Confidence 357899875 46899999999988731 1 12343 33444444332 2234 49999876432
Q ss_pred ------hhHHHHHHHHHHHHHHHCCCccccCCCCCceee
Q 012306 362 ------GDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLH 394 (466)
Q Consensus 362 ------~~~L~~L~~~L~~~f~~~Gl~~e~d~~r~fkPH 394 (466)
..+...+...|+..|.++|+...+.....+.|+
T Consensus 146 qYs~~~l~k~r~fi~~lE~~L~~aGi~pg~~P~SDV~p~ 184 (220)
T 3bo6_A 146 QYSASSLHNTRQFIECLESRLSESGLMPGQYPESDVHPE 184 (220)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTCBCCT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCcc
Confidence 335566788899999999999753222335553
No 80
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=24.12 E-value=2.3e+02 Score=27.04 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=48.1
Q ss_pred ceEEeeccccCCHHHHHHHHHHHHHhhHHhhhhcCCCCeEEEEcccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHH
Q 012306 294 FHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVII 373 (466)
Q Consensus 294 LHLTL~fLgl~~~eei~~a~~~L~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~~rVLya~V~~~~~~~~L~~L~~~L~ 373 (466)
..+++.+=. +.+++++.+.|.++.......+..++..+.+.+++-..= ..+| ++-+...+-...-.++...+.
T Consensus 186 ~~~~v~v~y---~~d~~~v~~~l~~~~~~~~~vl~~p~p~v~v~~~~~~~i---~~~v-~~~~~~~~~~~~~~~l~~~i~ 258 (286)
T 2vv5_A 186 NEFIIGVAY---DSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSI---NFVV-RVWSNSGDLQNVYWDVLERIK 258 (286)
T ss_dssp EEEEEEECT---TSCHHHHHHHHHHHHHHCTTBCTTSCEEEEEEEECSSSE---EEEE-EEEEETTTHHHHHHHHHHHHH
T ss_pred EEEEEEEcC---CCCHHHHHHHHHHHHHhCcccccCCCCEEEEEEecCCeE---EEEE-EEEEccchHHHHHHHHHHHHH
Confidence 344444433 345666777777765443345555677788877754321 1122 223333233334567888899
Q ss_pred HHHHHCCCcc
Q 012306 374 DAFNEAGLVF 383 (466)
Q Consensus 374 ~~f~~~Gl~~ 383 (466)
++|.+.|+..
T Consensus 259 ~~~~~~gI~i 268 (286)
T 2vv5_A 259 REFDAAGISF 268 (286)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHCCCcC
Confidence 9999999976
No 81
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=22.20 E-value=2e+02 Score=24.33 Aligned_cols=79 Identities=5% Similarity=-0.011 Sum_probs=48.6
Q ss_pred ccccCCHHHHHHHHHHHHHhhHHhhhhcCCCCeEEEEcccccC----------CCCCCCceEEEEe-eeccCChhHHHHH
Q 012306 300 MLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAP-VEEIGDGDRLLHA 368 (466)
Q Consensus 300 fLgl~~~eei~~a~~~L~~i~~~i~~~L~~~pf~L~l~GLg~F----------~~dp~~~rVLya~-V~~~~~~~~L~~L 368 (466)
-|..+++++.......+..+...+.+.+....+.+-.-|-..| .+|+..|..+|.. ....-+.+.|.++
T Consensus 46 ~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~~aGq~V~HlH~HviPR~~~D~~~p~~vw~~~~~~~~~~eel~~~ 125 (137)
T 3ohe_A 46 EIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVAALGNMVPQLHLHHIVRYQGDPAWPGPVWGKQPPVPYTEEQQASV 125 (137)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCCTTSSCCCCCCHHHHHHH
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeeccCcCCEEEEEEeCCCCCCCCCCcccccCCCCCCCCHHHHHHH
Confidence 3456678887777777777776676665545555554443332 3344444455632 1111235789999
Q ss_pred HHHHHHHHHH
Q 012306 369 CQVIIDAFNE 378 (466)
Q Consensus 369 ~~~L~~~f~~ 378 (466)
++.|+.+|.+
T Consensus 126 ~~~ir~~L~~ 135 (137)
T 3ohe_A 126 KAKLQPLLEQ 135 (137)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 82
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=21.87 E-value=1.8e+02 Score=25.17 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhHHhhhhcCCCCeEEEEcccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 012306 307 DRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 383 (466)
Q Consensus 307 eei~~a~~~L~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~~rVLya~V~~~~~~~~L~~L~~~L~~~f~~~Gl~~ 383 (466)
+-+..+.++|.+-+ ...-..|.++|+..+-+ |.-+....+...++.+++.|.+.+.+.|+.+
T Consensus 21 ~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIatg~S~rqv~Aiad~v~~~lk~~g~~~ 82 (136)
T 3ups_A 21 MLLKLVTDSLDDDQ-------ALEIATIPLAGKSSIAD--------YMVIASGRSSRQVTAMAQKLADRIKAATGYV 82 (136)
T ss_dssp HHHHHHHHHHHHTT-------CEEEEEEECTTTCSSCS--------EEEEEECSSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcC-------CCCeEEEECCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 44555555665543 12345678899988887 3333333346789999999999999887654
No 83
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=20.84 E-value=24 Score=34.20 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=19.1
Q ss_pred eEEEEeccccc-eeecCCCchhHHHHH
Q 012306 107 SLSVEVGASVI-RFIKGKEGSTQKKFE 132 (466)
Q Consensus 107 ~~~v~Vp~~~~-~~IIGk~G~t~k~iE 132 (466)
...+.|..+-| +.|||++|+++|+|.
T Consensus 231 ~~~i~ve~~~~k~iiig~~g~~lk~i~ 257 (301)
T 1wf3_A 231 KAILYVERPSQKAIVIGEGGRKIKEIG 257 (301)
T ss_dssp EEEEEESSHHHHHHHHCGGGHHHHHHH
T ss_pred EEEEEEeeCCceEEEEeCCchHHHHHH
Confidence 34556665444 689999999998873
Done!