Your job contains 1 sequence.
>012307
MATAETTDNGSINLPEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGP
DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS
PDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQA
INLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGH
LRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFL
EREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGV
GGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS
YGQIDTGYRPSYPQLGNSSYPSSSLSTQPYGGYGSSGVGGYTSYRL
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012307
(466 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 1181 5.2e-120 1
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 722 2.3e-71 1
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 206 1.5e-19 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 182 3.8e-18 2
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 170 1.5e-17 2
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 182 5.2e-17 2
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 183 5.6e-17 2
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 182 6.1e-17 2
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 181 7.8e-17 2
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 190 9.7e-17 2
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 182 1.2e-16 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 182 1.2e-16 2
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 190 1.3e-16 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 182 1.4e-16 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 182 1.4e-16 2
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 182 1.4e-16 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 182 1.4e-16 2
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 190 2.5e-16 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 179 2.8e-16 2
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 175 9.5e-16 2
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 175 9.5e-16 2
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 175 9.5e-16 2
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 175 9.5e-16 2
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 175 9.5e-16 2
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 175 9.5e-16 2
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 176 1.3e-15 2
TAIR|locus:2168367 - symbol:RCF3 "AT5G53060" species:3702... 222 2.5e-15 1
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 198 4.4e-15 2
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 175 6.2e-15 2
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 175 6.6e-15 2
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 175 6.8e-15 2
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 175 8.3e-15 2
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 172 9.3e-15 2
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 175 1.2e-14 2
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 175 1.3e-14 2
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 175 1.5e-14 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 175 1.5e-14 2
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 175 1.5e-14 2
WB|WBGene00017816 - symbol:F26B1.2b species:6239 "Caenorh... 139 4.1e-14 2
UNIPROTKB|P91277 - symbol:F26B1.2 "Protein F26B1.2, isofo... 139 4.1e-14 2
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 170 5.9e-14 2
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 158 6.1e-14 2
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 166 7.4e-14 2
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 172 7.7e-14 2
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 170 9.9e-14 2
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 171 1.2e-13 2
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 170 1.3e-13 2
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 183 1.4e-13 1
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 171 1.6e-13 2
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 170 1.6e-13 2
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 170 4.2e-13 2
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 200 7.2e-13 1
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 175 1.1e-12 1
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 175 1.1e-12 1
UNIPROTKB|H9L242 - symbol:HNRPK "Uncharacterized protein"... 127 1.5e-12 2
UNIPROTKB|Q5ZIQ3 - symbol:HNRNPK "Heterogeneous nuclear r... 127 1.5e-12 2
UNIPROTKB|H9L0I0 - symbol:HNRPK "Uncharacterized protein"... 126 2.0e-12 2
UNIPROTKB|E1C453 - symbol:HNRNPK "Heterogeneous nuclear r... 127 2.5e-12 2
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 128 2.5e-12 2
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 127 2.8e-12 2
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 127 3.2e-12 2
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 127 3.2e-12 2
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 127 3.2e-12 2
UNIPROTKB|C9JZY3 - symbol:PCBP4 "Poly(rC)-binding protein... 170 3.8e-12 1
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 191 4.2e-12 1
ZFIN|ZDB-GENE-040426-1923 - symbol:hnrpkl "heterogeneous ... 125 5.5e-12 2
WB|WBGene00003978 - symbol:pes-4 species:6239 "Caenorhabd... 184 2.0e-11 1
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 139 2.1e-11 2
UNIPROTKB|E2RA50 - symbol:E2RA50 "Uncharacterized protein... 127 4.7e-11 2
UNIPROTKB|B4DLC0 - symbol:PCBP2 "Poly(rC)-binding protein... 175 6.8e-11 1
FB|FBgn0261552 - symbol:ps "pasilla" species:7227 "Drosop... 152 1.2e-10 2
CGD|CAL0000592 - symbol:orf19.5627 species:5476 "Candida ... 126 1.4e-10 2
CGD|CAL0001510 - symbol:PBP2 species:5476 "Candida albica... 169 1.4e-10 2
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 124 1.5e-10 2
UNIPROTKB|E2RJ54 - symbol:E2RJ54 "Uncharacterized protein... 111 2.7e-10 2
ZFIN|ZDB-GENE-030131-4357 - symbol:khsrp "KH-type splicin... 143 3.1e-10 2
UNIPROTKB|F8W1G6 - symbol:PCBP2 "Poly(rC)-binding protein... 152 3.5e-10 1
UNIPROTKB|Q5T6W5 - symbol:HNRNPK "Heterogeneous nuclear r... 127 4.7e-10 2
UNIPROTKB|F8VXH9 - symbol:PCBP2 "Poly(rC)-binding protein... 149 7.4e-10 1
ZFIN|ZDB-GENE-040426-2159 - symbol:fubp1 "far upstream el... 131 1.1e-09 2
ASPGD|ASPL0000045500 - symbol:AN10257 species:162425 "Eme... 111 2.2e-09 2
UNIPROTKB|Q96I24 - symbol:FUBP3 "Far upstream element-bin... 115 2.2e-09 2
UNIPROTKB|G3V829 - symbol:Fubp3 "RCG45587" species:10116 ... 120 2.6e-09 2
UNIPROTKB|J9P1I9 - symbol:FUBP3 "Uncharacterized protein"... 119 2.7e-09 2
RGD|1307004 - symbol:Fubp3 "far upstream element (FUSE) b... 119 3.3e-09 2
UNIPROTKB|F1PEW1 - symbol:FUBP3 "Uncharacterized protein"... 119 3.8e-09 2
UNIPROTKB|F1NYJ3 - symbol:FUBP3 "Uncharacterized protein"... 118 4.0e-09 2
UNIPROTKB|Q96AE4 - symbol:FUBP1 "Far upstream element-bin... 127 4.0e-09 2
UNIPROTKB|E9PEB5 - symbol:FUBP1 "Far upstream element-bin... 127 4.2e-09 2
MGI|MGI:1196294 - symbol:Fubp1 "far upstream element (FUS... 124 4.3e-09 2
UNIPROTKB|B4DT31 - symbol:FUBP1 "cDNA FLJ53425, highly si... 127 4.4e-09 2
UNIPROTKB|F1NGC0 - symbol:FUBP3 "Uncharacterized protein"... 118 4.7e-09 2
UNIPROTKB|F1S0X8 - symbol:FUBP3 "Uncharacterized protein"... 119 6.1e-09 2
UNIPROTKB|D4A8D6 - symbol:D4A8D6 "Uncharacterized protein... 144 7.9e-09 2
ZFIN|ZDB-GENE-041121-12 - symbol:zgc:101598 "zgc:101598" ... 110 7.9e-09 2
RGD|1308032 - symbol:Nova2 "neuro-oncological ventral ant... 146 7.9e-09 2
UNIPROTKB|J9P014 - symbol:FUBP1 "Uncharacterized protein"... 124 8.6e-09 2
UNIPROTKB|F1S9S5 - symbol:FUBP1 "Uncharacterized protein"... 124 8.6e-09 2
UNIPROTKB|E1BX03 - symbol:FUBP1 "Uncharacterized protein"... 124 8.6e-09 2
UNIPROTKB|F1M8T3 - symbol:F1M8T3 "Uncharacterized protein... 149 8.9e-09 1
WARNING: Descriptions of 98 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
Identities = 255/443 (57%), Positives = 311/443 (70%)
Query: 2 ATAETTDN-GSINLPEPDPQXXXXXXXXXXXXXXXXXXIGSENTEHTTESDS-ALPQSTG 59
A A++ +N GSINLPE + S + DS A ++T
Sbjct: 3 AVADSVENNGSINLPENENLIPAGFSAAALLDE------NSGAFPELNQPDSLAAAETTF 56
Query: 60 PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS 119
PD EE+ WPGWPG CVFRMIVPV KVG+IIGRKG+ IKK CE+TRARIKVLDGPV+
Sbjct: 57 PDTNDSAEER-WPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVN 115
Query: 120 SPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVD-AKASGAAFCSVRLLVPST 178
+PDRIVLISGKEEPEA +SPAMDA +RVF+RVSGLP+ND D + +G+ F SVRLLV ST
Sbjct: 116 TPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVAST 175
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQXXXXXXXXXXXXXX 238
QAINLIGKQGSLIKSI ENSGASVR+LS +E PFY +DERIV++Q
Sbjct: 176 QAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIV 235
Query: 239 XHLRKFLVDQGVLPLFEKTYNASISQERQVETWAD-KSSLHAATQSAISTEYTPSTRRES 297
HLR+FLVD V+PLFEK Y A +SQ RQ E A+ KSSLH + + + +++ RRE
Sbjct: 236 GHLRRFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNLMEPDFSLLARREP 295
Query: 298 LFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDI 357
LFLER+ +++SR + SG+SIY QDP LS S L R S VTQ++QTMQIP SYAEDI
Sbjct: 296 LFLERDSRVDSRVQPSGVSIYSQDPVLSARHSPGLARVSSAFVTQVSQTMQIPFSYAEDI 355
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE-- 415
IGV G +I IRR SGA IT++ES PD+ITVEIKGT+SQVQ A+QLIQE++ NHKE
Sbjct: 356 IGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTTSQVQTAEQLIQEFIINHKEPV 414
Query: 416 SITSSYGQIDTGYRPSYP-QLGN 437
S++ Y +ID+GY P+YP QL N
Sbjct: 415 SVSGGYARIDSGYVPAYPPQLSN 437
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 166/382 (43%), Positives = 229/382 (59%)
Query: 45 EHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTC 104
EH + P+ DA EEK+WPGWPG VFRM+VP KVGSIIGRKG++IKK
Sbjct: 157 EHLESLQKSEPEE---DATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIV 213
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDA-K 162
E+TRARIK+LDGP + +R V++SGKEEPE+ + P+MD +RV R V GL D +A +
Sbjct: 214 EETRARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGL---DGEASQ 270
Query: 163 ASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
A + S RLLVP++QA +LIGKQG +K+IQE S VRVL +++ P + +D+R+VE
Sbjct: 271 APPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVE 330
Query: 223 MQXXXXXXXXXXXXXXXHLRKFLVDQGVLPLFEKTYNASISQERQV----ETWADKSSLH 278
+ HLRKFLVD+ ++P FE Q + ++W H
Sbjct: 331 VVGEPTSVHRALELIASHLRKFLVDRSIIPFFENQMQKPTRQMDHMPPPHQSWGPPQG-H 389
Query: 279 AATQSAISTEYTPST------RRESLFLE---REPQLESRYRLSGISIYGQDPALSTIRS 329
A + + P R +S + R+P +E + GIS YG++P ++ S
Sbjct: 390 APSVGGGGYGHNPPPYMQPPPRHDSYYPPPEMRQPPMEKQPH-QGISAYGREPPMNVHVS 448
Query: 330 SALGRASGPIVTQ-ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEI 388
SA P+V Q +TQ MQIP+SYA+ +IG G++I RR SGA +T+QE+RG+P E+
Sbjct: 449 SA-----PPMVAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEM 503
Query: 389 TVEIKGTSSQVQLAQQLIQEYM 410
TVE+ GT SQVQ A QLIQ +M
Sbjct: 504 TVEVSGTGSQVQTAVQLIQNFM 525
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 206 (77.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 57/170 (33%), Positives = 90/170 (52%)
Query: 54 LPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV 113
+P+ GP V EE+ FR++ P KVGS+IG+ G +++ ++ A IKV
Sbjct: 260 MPEDVGPFNRPVVEEE--------VAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKV 311
Query: 114 LDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRL 173
D S +RI++IS +E E S A D +RV R+ ++ + S A RL
Sbjct: 312 SDPTHDSEERIIVISARENLERRHSLAQDGVMRVHNRIV-----EIGFEPSAAVVA--RL 364
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
LV S L+GK G LI ++ +GAS+RV + D+A Y ++ + IV++
Sbjct: 365 LVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQV 414
Score = 120 (47.3 bits), Expect = 9.1e-17, Sum P(3) = 9.1e-17
Identities = 36/101 (35%), Positives = 53/101 (52%)
Query: 128 SGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDA----KASGAAFCSVRLLVPSTQAIN 182
SG ++ EAP S M A +RVF+R V G VD K C R++V Q
Sbjct: 105 SGGDDEEAPSSAQM-ALLRVFERIVFGDDAATVDGDELDKGESEGLC--RMIVRGNQVDY 161
Query: 183 LIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
L+ K G +I+ I+E+SGA VR+ S D+ P + +++M
Sbjct: 162 LMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQM 202
Score = 108 (43.1 bits), Expect = 9.1e-17, Sum P(3) = 9.1e-17
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDG-PVSSPDRIVLI---SGKEEPEA 135
FR++ P + G+IIG+ G +I+ T ++I+V+D PV S +R+VLI SGK++ E+
Sbjct: 21 FRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKDES 80
Query: 136 PV 137
V
Sbjct: 81 NV 82
Score = 100 (40.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 327 IRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPD 386
+R+ +G + P++T + IP +Y + G +++ I++ SGA + V + +
Sbjct: 534 LRNEPIG-SENPVMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTT 592
Query: 387 EITVEIKGTSSQVQLAQQLIQEYM 410
E V + GTS Q AQ L+ ++
Sbjct: 593 EGLVVVSGTSDQAHFAQSLLHAFI 616
Score = 94 (38.1 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 163 ASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
A+ A RLL P+T+ +IGK GS+I+ +Q +G+ +RV+ D+ P V +ER+V
Sbjct: 13 ATAAESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVI--DDIP--VPSEERVV 67
Score = 70 (29.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 30/124 (24%), Positives = 52/124 (41%)
Query: 317 IYGQDPALSTIRSSAL--GRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
++G D A T+ L G + G + I + Q+ Y ++ GG I+ IR SGA
Sbjct: 128 VFGDDAA--TVDGDELDKGESEG-LCRMIVRGNQV--DY---LMSKGGKMIQKIREDSGA 179
Query: 375 IITVQESRGLPD-----EITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQI-DTGY 428
I+ + + +P ++ +++ G S V+ A L+ + T GY
Sbjct: 180 IVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQESGAPPTWDECPFPQPGY 239
Query: 429 RPSY 432
P Y
Sbjct: 240 PPEY 243
Score = 65 (27.9 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 59 GPDAAAVPEEKKWPGWP-GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRA--RIKVLD 115
G DAA V ++ G G C RMIV +V ++ + G++I+K ED+ A RI D
Sbjct: 130 GDDAATVDGDELDKGESEGLC--RMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTD 187
Query: 116 G--PVSSP-DRIVLISGK 130
P + P D ++ ++GK
Sbjct: 188 QIPPCAFPGDVVIQMNGK 205
Score = 53 (23.7 bits), Expect = 5.6e-12, Sum P(3) = 5.6e-12
Identities = 19/88 (21%), Positives = 37/88 (42%)
Query: 332 LGRASGPIVTQ-ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITV 390
+G + P+V + + + P +IG GG + ++ SGA I V + +E +
Sbjct: 264 VGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERII 323
Query: 391 EIKGTSSQVQLAQQLIQE-YMNNHKESI 417
I + ++ L Q+ M H +
Sbjct: 324 VISAREN-LERRHSLAQDGVMRVHNRIV 350
Score = 50 (22.7 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITV----QESR--GLPDEITVEIKGTSSQVQ 400
Y ++G GG I +RR +GA I V Q ++ DEI V++ G VQ
Sbjct: 370 YIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEI-VQVIGNLKTVQ 422
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 182 (69.1 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 49/131 (37%), Positives = 81/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G P + A
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 103
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ +K + + ++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA
Sbjct: 104 F--AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 162 QVQV-AGDMLP 171
Score = 104 (41.7 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 33/86 (38%), Positives = 42/86 (48%)
Query: 323 ALSTIRSSALGRASGPIVTQITQT--MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQE 380
ALS + SS LG SG + T + IP IIG GT I IR+ SGA I +
Sbjct: 271 ALSDLLSSHLGTLSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN 330
Query: 381 SRGLPDEITVEIKGTSSQVQLAQQLI 406
+ E + I GT + + LAQ LI
Sbjct: 331 ATEGSSERQITITGTPANISLAQYLI 356
Score = 71 (30.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E SGA + +
Sbjct: 47 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 81
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 170 (64.9 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 51/149 (34%), Positives = 80/149 (53%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKEEPEA- 135
V+R++ P+ VG +IG+ G++I +T+A+IKV D R++ I S KE+ E
Sbjct: 37 VYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEI 96
Query: 136 --------PVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGK 186
P+ A DA ++V+ V+ EN+ RLLVP +Q+ +LIGK
Sbjct: 97 GFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGK 156
Query: 187 QGSLIKSIQENSGASVRVLSADEA-PFYV 214
G IK I+ + ASV+V+S D + P +V
Sbjct: 157 AGENIKRIRRRTRASVKVVSKDVSDPSHV 185
Score = 120 (47.3 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 30/105 (28%), Positives = 51/105 (48%)
Query: 306 LESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSI 365
+ S SG YG PA + S + G + + + IP ++G GG ++
Sbjct: 499 MSSMASTSGFHGYGSFPAGDNVLGSTGPYSYGRLPSSSALEILIPAHAMSKVMGKGGGNL 558
Query: 366 ENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
ENIRR SGA+I + S+ + + GT Q++ A+ L+Q ++
Sbjct: 559 ENIRRISGAMIEISASKTSHGDHIALLSGTLEQMRCAENLVQAFV 603
Score = 112 (44.5 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 34/126 (26%), Positives = 67/126 (53%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDR--IVLISGKEEPEAP 136
VF+++ P+ + +IG+ G IK+ E + + I+V D D +++++ E P+
Sbjct: 313 VFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDM 372
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
S A++A + + + + ND DA+ ++LLV S +IGK GS+I I++
Sbjct: 373 KSMAVEAVLLLQEYI-----NDEDAEN-----VKMQLLVSSKVIGCVIGKSGSVINEIRK 422
Query: 197 NSGASV 202
+ A++
Sbjct: 423 RTNANI 428
Score = 83 (34.3 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 350 PISYAEDIIGVGGTSIENIRRTSGAIITVQESRGL--PDEITVEIKGTSSQVQL------ 401
P+ +IG GG++I+ IR SG+ I V +SR DE + + T S +
Sbjct: 319 PLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVE 378
Query: 402 AQQLIQEYMNN 412
A L+QEY+N+
Sbjct: 379 AVLLLQEYIND 389
Score = 67 (28.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 145 VRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
V VF S LP +S + ++L P + +IGK GS IK I+E SG+ + V
Sbjct: 290 VPVF--ASSLPVTHGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEV 347
Score = 63 (27.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
+IG G+ I IR+ + A I + S+G D++ VE+ G S V+ A LIQ
Sbjct: 409 VIGKSGSVINEIRKRTNANICI--SKGKKDDL-VEVSGEVSSVRDA--LIQ 454
Score = 63 (27.2 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
+++V +G +IG+ G +I + + T A I + G D +V +SG+ VS
Sbjct: 398 QLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKG---KKDDLVEVSGE------VSSV 448
Query: 141 MDAAVRVFKRVSGLPENDVDAKAS 164
DA +++ R+ D D+ A+
Sbjct: 449 RDALIQIVLRLREDVLGDKDSVAT 472
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 182 (69.1 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 49/131 (37%), Positives = 81/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G P + A
Sbjct: 25 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 79
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ +K + + ++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA
Sbjct: 80 F--AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 137
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 138 QVQV-AGDMLP 147
Score = 89 (36.4 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 332 LGRASGPIVTQITQT--MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
+G++SG + T + IP IIG GT I IR+ SGA I + + E
Sbjct: 232 MGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ 291
Query: 390 VEIKGTSSQVQLAQQLI 406
+ I GT + + LAQ LI
Sbjct: 292 ITITGTPANISLAQYLI 308
Score = 71 (30.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E SGA + +
Sbjct: 23 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 57
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 183 (69.5 bits), Expect = 5.6e-17, Sum P(2) = 5.6e-17
Identities = 49/131 (37%), Positives = 82/131 (62%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI V +G + P+RIV I+G P + A
Sbjct: 19 RLLMHGKEVGSIIGKKGETVKKMREESSARINVSEG--NCPERIVTITG---PTDAIFKA 73
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ +K + + +++A+ ++RL+VP++Q +LIGK GS IK ++E++GA
Sbjct: 74 F--AMIAYKFEEDIINSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGA 131
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 132 QVQV-AGDMLP 141
Score = 90 (36.7 bits), Expect = 5.6e-17, Sum P(2) = 5.6e-17
Identities = 36/136 (26%), Positives = 61/136 (44%)
Query: 282 QSAISTEYTPSTRRESLFLEREP----QLESRYRLSGISIYG-QDPALSTIRSSALGRAS 336
Q T P+T SL L+ +P ++ +Y + + A+ ++LG+ +
Sbjct: 195 QVRADTLTAPATANLSLLLQHQPLPAYTIQGQYAIPHPDLTKLHQLAMQQTPFTSLGQTT 254
Query: 337 G--PIVTQITQTMQIPISYAEDIIG--VG--GTSIENIRRTSGAIITVQESRGLPDEITV 390
P V +Q ++ D+IG +G GT I IR+ SGA I + + + +
Sbjct: 255 PAFPGVDASSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSDRQI 314
Query: 391 EIKGTSSQVQLAQQLI 406
I GT + + LAQ LI
Sbjct: 315 TITGTPANISLAQYLI 330
Score = 66 (28.3 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E S A + V
Sbjct: 17 TIRLLMHGKEVGSIIGKKGETVKKMREESSARINV 51
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 182 (69.1 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 49/131 (37%), Positives = 81/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ +K + + ++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA
Sbjct: 72 F--AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 88 (36.0 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 24/63 (38%), Positives = 31/63 (49%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T + IP IIG GT I IR+ SGA I + + E + I GT + + LAQ
Sbjct: 243 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 302
Query: 404 QLI 406
LI
Sbjct: 303 YLI 305
Score = 71 (30.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E SGA + +
Sbjct: 15 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 49
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 181 (68.8 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
Identities = 48/126 (38%), Positives = 74/126 (58%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG + A
Sbjct: 27 RLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGTTNA---IFSA 81
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ F+ NDV K G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 82 FTLITKKFEEF-----NDV-GKV-GKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGC 134
Query: 201 SVRVLS 206
S++V S
Sbjct: 135 SIQVAS 140
Score = 100 (40.3 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
Identities = 36/107 (33%), Positives = 51/107 (47%)
Query: 319 GQDPA-LSTIRSSALGRASGPIVTQITQTMQIPISYAED----IIGVGGTSIENIRRTSG 373
G PA L+ + S L R + P Q Q ++ + D IIG GGT I IR+ SG
Sbjct: 260 GSAPAALAALAGSQL-RTANP--ANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISG 316
Query: 374 AIITV---QESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
A+I + +E G + T+ I G V LAQ LI + K ++
Sbjct: 317 AMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMSVELQKANL 363
Score = 69 (29.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 154 LPENDVDAKASGAAF--------CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+ +N+ + A GA+ ++RL++ + ++IGK+G ++ +E SGA + +
Sbjct: 1 MEDNNTSSSAGGASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI 59
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 190 (71.9 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 53/136 (38%), Positives = 82/136 (60%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G S P+RIV I+G P
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITG------PT--- 65
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSIQ 195
DA + F ++ E D++A + + S +RL+VP++Q +LIGK GS IK I+
Sbjct: 66 -DAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 196 ENSGASVRVLSADEAP 211
E++GA V+V + D P
Sbjct: 125 ESTGAQVQV-AGDMLP 139
Score = 77 (32.2 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
+ IP IIG G+ I IR+ SGA I + + E V I G+ + + LAQ LI
Sbjct: 249 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLI 308
Query: 407 QEYMN 411
N
Sbjct: 309 NARAN 313
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 182 (69.1 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 49/131 (37%), Positives = 81/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ +K + + ++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA
Sbjct: 72 F--AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 89 (36.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 332 LGRASGPIVTQITQT--MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
+G++SG + T + IP IIG GT I IR+ SGA I + + E
Sbjct: 271 MGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ 330
Query: 390 VEIKGTSSQVQLAQQLI 406
+ I GT + + LAQ LI
Sbjct: 331 ITITGTPANISLAQYLI 347
Score = 71 (30.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E SGA + +
Sbjct: 15 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 49
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 182 (69.1 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 49/131 (37%), Positives = 81/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ +K + + ++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA
Sbjct: 72 F--AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 89 (36.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 332 LGRASGPIVTQITQT--MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
+G++SG + T + IP IIG GT I IR+ SGA I + + E
Sbjct: 271 MGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ 330
Query: 390 VEIKGTSSQVQLAQQLI 406
+ I GT + + LAQ LI
Sbjct: 331 ITITGTPANISLAQYLI 347
Score = 71 (30.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E SGA + +
Sbjct: 15 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 49
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 190 (71.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 53/136 (38%), Positives = 82/136 (60%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G S P+RIV I+G P
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITG------PT--- 65
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSIQ 195
DA + F ++ E D++A + + S +RL+VP++Q +LIGK GS IK I+
Sbjct: 66 -DAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 196 ENSGASVRVLSADEAP 211
E++GA V+V + D P
Sbjct: 125 ESTGAQVQV-AGDMLP 139
Score = 75 (31.5 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
+ IP IIG G+ I IR+ SGA I + + E V I G+ + + LAQ LI
Sbjct: 246 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLI 305
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 182 (69.1 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 49/131 (37%), Positives = 81/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G P + A
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 103
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ +K + + ++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA
Sbjct: 104 F--AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 162 QVQV-AGDMLP 171
Score = 89 (36.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 332 LGRASGPIVTQITQT--MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
+G++SG + T + IP IIG GT I IR+ SGA I + + E
Sbjct: 281 MGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ 340
Query: 390 VEIKGTSSQVQLAQQLI 406
+ I GT + + LAQ LI
Sbjct: 341 ITITGTPANISLAQYLI 357
Score = 71 (30.1 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E SGA + +
Sbjct: 47 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 81
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 182 (69.1 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 49/131 (37%), Positives = 81/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G P + A
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 103
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ +K + + ++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA
Sbjct: 104 F--AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 162 QVQV-AGDMLP 171
Score = 89 (36.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 332 LGRASGPIVTQITQT--MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
+G++SG + T + IP IIG GT I IR+ SGA I + + E
Sbjct: 281 MGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ 340
Query: 390 VEIKGTSSQVQLAQQLI 406
+ I GT + + LAQ LI
Sbjct: 341 ITITGTPANISLAQYLI 357
Score = 71 (30.1 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E SGA + +
Sbjct: 47 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 81
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 182 (69.1 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 49/131 (37%), Positives = 81/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G P + A
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 103
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ +K + + ++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA
Sbjct: 104 F--AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 162 QVQV-AGDMLP 171
Score = 89 (36.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 332 LGRASGPIVTQITQT--MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
+G++SG + T + IP IIG GT I IR+ SGA I + + E
Sbjct: 281 MGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ 340
Query: 390 VEIKGTSSQVQLAQQLI 406
+ I GT + + LAQ LI
Sbjct: 341 ITITGTPANISLAQYLI 357
Score = 71 (30.1 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E SGA + +
Sbjct: 47 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 81
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 182 (69.1 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 49/131 (37%), Positives = 81/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G P + A
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 103
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ +K + + ++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA
Sbjct: 104 F--AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 162 QVQV-AGDMLP 171
Score = 89 (36.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 332 LGRASGPIVTQITQT--MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
+G++SG + T + IP IIG GT I IR+ SGA I + + E
Sbjct: 281 MGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ 340
Query: 390 VEIKGTSSQVQLAQQLI 406
+ I GT + + LAQ LI
Sbjct: 341 ITITGTPANISLAQYLI 357
Score = 71 (30.1 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E SGA + +
Sbjct: 47 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 81
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 190 (71.9 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 53/136 (38%), Positives = 82/136 (60%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G S P+RIV I+G P
Sbjct: 16 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITG------PT--- 64
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSIQ 195
DA + F ++ E D++A + + S +RL+VP++Q +LIGK GS IK I+
Sbjct: 65 -DAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIR 123
Query: 196 ENSGASVRVLSADEAP 211
E++GA V+V + D P
Sbjct: 124 ESTGAQVQV-AGDMLP 138
Score = 76 (31.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
+ IP IIG G+ I IR+ SGA I + + E V I G+ + + LAQ LI
Sbjct: 284 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLI 343
Query: 407 QEYMNN 412
+++
Sbjct: 344 NARLSS 349
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 179 (68.1 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 48/131 (36%), Positives = 81/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G P + A
Sbjct: 19 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 73
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ +K + + ++ A+ ++RL+VP++Q +LIGK GS IK ++E++GA
Sbjct: 74 F--AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGA 131
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 132 QVQV-AGDMLP 141
Score = 88 (36.0 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 24/63 (38%), Positives = 31/63 (49%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T + IP IIG GT I IR+ SGA I + + E + I GT + + LAQ
Sbjct: 268 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQ 327
Query: 404 QLI 406
LI
Sbjct: 328 YLI 330
Score = 71 (30.1 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E SGA + +
Sbjct: 17 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 51
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 175 (66.7 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP+TQ +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 88 (36.0 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
TQ T + IP + IIG G +I IR+ SGA I + V I G+++ +
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 337
Query: 401 LAQQLIQEYMNNHK 414
LAQ LI +++ K
Sbjct: 338 LAQYLINARLSSEK 351
Score = 72 (30.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K I+E SGA + +
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 49
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 175 (66.7 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP+TQ +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 88 (36.0 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
TQ T + IP + IIG G +I IR+ SGA I + V I G+++ +
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 337
Query: 401 LAQQLIQEYMNNHK 414
LAQ LI +++ K
Sbjct: 338 LAQYLINARLSSEK 351
Score = 72 (30.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K I+E SGA + +
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 49
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 175 (66.7 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP+TQ +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 88 (36.0 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
TQ T + IP + IIG G +I IR+ SGA I + V I G+++ +
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 337
Query: 401 LAQQLIQEYMNNHK 414
LAQ LI +++ K
Sbjct: 338 LAQYLINARLSSEK 351
Score = 72 (30.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K I+E SGA + +
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 49
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 175 (66.7 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP+TQ +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 88 (36.0 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
TQ T + IP + IIG G +I IR+ SGA I + V I G+++ +
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 337
Query: 401 LAQQLIQEYMNNHK 414
LAQ LI +++ K
Sbjct: 338 LAQYLINARLSSEK 351
Score = 72 (30.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K I+E SGA + +
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 49
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 175 (66.7 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP+TQ +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 88 (36.0 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
TQ T + IP + IIG G +I IR+ SGA I + V I G+++ +
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 337
Query: 401 LAQQLIQEYMNNHK 414
LAQ LI +++ K
Sbjct: 338 LAQYLINARLSSEK 351
Score = 72 (30.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K I+E SGA + +
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 49
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 175 (66.7 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP+TQ +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 88 (36.0 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
TQ T + IP + IIG G +I IR+ SGA I + V I G+++ +
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 337
Query: 401 LAQQLIQEYMNNHK 414
LAQ LI +++ K
Sbjct: 338 LAQYLINARLSSEK 351
Score = 72 (30.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K I+E SGA + +
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI 49
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 176 (67.0 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 49/136 (36%), Positives = 78/136 (57%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +K+ E++ ARI + +G S P+RI+ I+G A
Sbjct: 30 RLLMHGKEVGSIIGKKGETVKRIREESSARINISEG--SCPERIITITG----------A 77
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSIQ 195
+ R F ++ E D+ A + S +RL++P++Q +LIGK GS IK I+
Sbjct: 78 TECVFRAFTMITIKLEEDLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIR 137
Query: 196 ENSGASVRVLSADEAP 211
E +GA V+V + D P
Sbjct: 138 EKTGAQVQV-AGDLLP 152
Score = 91 (37.1 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 26/77 (33%), Positives = 35/77 (45%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
+Q + IP IIG GT I IR+ SGA I + + V I G+ + LAQ
Sbjct: 281 SQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTITGSPISINLAQ 340
Query: 404 QLIQEYMNNHKESITSS 420
LI + K + SS
Sbjct: 341 YLITSCLETAKSTAQSS 357
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 222 (83.2 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 82/359 (22%), Positives = 163/359 (45%)
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
+A AVP + + VF+++ P K+ ++G +I + ++V D S
Sbjct: 310 EAPAVPVGENV--YSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGS 367
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQ 179
++I+ IS +E P+ P PA +A + + ++ L P+ D + RLLVPS
Sbjct: 368 DEQIITISSEEAPDDPFFPAQEALLHIQTQIIDLIPDKD--------NLITTRLLVPSRD 419
Query: 180 AINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQXXXXXXXXXXXXXXX 239
+I L GK GS + I +G SV++L+ +E P + ++ ++++
Sbjct: 420 SICLEGKAGS-VSEISRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTL 478
Query: 240 HLRKFLVDQGVLPLFEK-TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESL 298
LR + + L +K T AS S +E A + A++ + I + P++ +L
Sbjct: 479 LLRSHMFKE----LSQKETPPASTSTTGPLEGVAGVMEV-ASSNNTIQSREGPTS--SNL 531
Query: 299 FLEREPQLESRYR--LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAED 356
L++ + +++ ++ G+ + + R + P+VT+ T + +P +
Sbjct: 532 NLQQVSTILPQFKEGFGSVAKAGESEHREEVPVTT-SRMAVPLVTRSTLEVVLPEAVVPK 590
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
++ + I SGA +T+ E R + + I GT Q + AQ L+Q ++ + +E
Sbjct: 591 LVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQGFILSIQE 649
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 198 (74.8 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 45/152 (29%), Positives = 83/152 (54%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-SGKEEPEA-- 135
VFR + PV K+GS+IGR G+++K+ DTR++I++ + +R++ I S +E A
Sbjct: 51 VFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFG 110
Query: 136 ----PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+SPA DA R+ RV D+ G + +LLVPS Q ++G+ G ++
Sbjct: 111 DGEKVLSPAQDALFRIHDRVVADDARSEDSP-EGEKQVTAKLLVPSDQIGCILGRGGQIV 169
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
++I+ +GA +R++ P + ++++
Sbjct: 170 QNIRSETGAQIRIVKDRNMPLCALNSDELIQI 201
Score = 195 (73.7 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 48/168 (28%), Positives = 86/168 (51%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++ PV + S+IG+ G LI + ++TRA IKV D ++ IS +E E SP
Sbjct: 287 RLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPT 346
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
++A +R+ + S E D SG + RLLVPS++ ++GK G++I ++ + A
Sbjct: 347 IEAVMRLQPKCSDKVERD-----SGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKA 401
Query: 201 SVRVLSADEAPFYVTEDERIVEMQXXXXXXXXXXXXXXXHLRKFLVDQ 248
++R+L + P ++D+ +V++ LR + D+
Sbjct: 402 NIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDR 449
Score = 64 (27.6 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 26/110 (23%), Positives = 49/110 (44%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLP--- 385
S + R SG + T + +P S I+G GG I +RR + A I + LP
Sbjct: 358 SDKVERDSG--LVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVA 415
Query: 386 --DEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
D+ V+I G ++ +A++ + + + + ++ G + + P P
Sbjct: 416 SDDDEMVQISG---ELDVAKEALIQITSRLRANVFDREGAV-SALMPVLP 461
Score = 59 (25.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 338 PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR 382
P T+ + P+ +IG GG I +R+ + A I V SR
Sbjct: 279 PPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSR 323
Score = 40 (19.1 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 295 RESLFLEREPQLESRYRLSGISIYGQDP 322
R+S LER Y SG+S G P
Sbjct: 478 RDSRRLERGNPYPGGYGSSGVSAEGYSP 505
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 175 (66.7 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 77 (32.2 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 245 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 303
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 304 INVRLSSETGGMGSS 318
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 175 (66.7 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 77 (32.2 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 248 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 306
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 307 INVRLSSETGGMGSS 321
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 175 (66.7 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 77 (32.2 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 249 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 307
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 308 INVRLSSETGGMGSS 322
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 175 (66.7 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 77 (32.2 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 258 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 316
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 317 INVRLSSETGGMGSS 331
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 172 (65.6 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 45/124 (36%), Positives = 76/124 (61%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A A+ +
Sbjct: 5 EVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKAF--AMII 57
Query: 148 FKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA 207
K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA V+V +
Sbjct: 58 DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AG 116
Query: 208 DEAP 211
D P
Sbjct: 117 DMLP 120
Score = 82 (33.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEEPEAPVSP 139
R++VP + GS+IG+ G IK+ E T A+++V D +S +R + I+G P++ +
Sbjct: 82 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI--PQSIIEC 139
Query: 140 AMDAAVRVFKRVSGLPENDV 159
V + + +S P V
Sbjct: 140 VKQICVVMLETLSQSPPKGV 159
Score = 77 (32.2 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 228 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 286
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 287 INVRLSSETGGMGSS 301
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 175 (66.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 77 (32.2 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 276 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 334
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 335 INVRLSSETGGMGSS 349
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 175 (66.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 77 (32.2 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 280 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 338
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 339 INVRLSSETGGMGSS 353
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 175 (66.7 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 77 (32.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 289 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 347
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 348 INVRLSSETGGMGSS 362
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 175 (66.7 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 77 (32.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 292 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 350
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 351 INVRLSSETGGMGSS 365
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 175 (66.7 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 77 (32.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 292 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 350
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 351 INVRLSSETGGMGSS 365
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 139 (54.0 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 34/77 (44%), Positives = 46/77 (59%)
Query: 337 GPIVT-QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGT 395
GP+ T Q+T IP IIG GG I IR+ SGA IT+++S G P+ I + IKGT
Sbjct: 314 GPVTTAQVT----IPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQPERI-ITIKGT 368
Query: 396 SSQVQLAQQLIQEYMNN 412
Q+ AQ L+Q+ + N
Sbjct: 369 EQQIHSAQYLLQQCVRN 385
Score = 115 (45.5 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 36/126 (28%), Positives = 64/126 (50%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++V G+IIG+ GE IK+ + A ++V D ++P+R+ ++ E+
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTVTADEK-------- 102
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + K V LP ++ S C VR+LV + A LIG+ GS IK ++E A
Sbjct: 103 --TVLNILKDV--LPR--LEDNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSA 156
Query: 201 SVRVLS 206
+++ +
Sbjct: 157 RLKIFT 162
Score = 96 (38.9 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV-SSPDRIVLISGKEE 132
C RM+V G++IGR G IK+ E AR+K+ G S DR+++ SG+++
Sbjct: 125 CEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQK 180
Score = 72 (30.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 155 PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSAD--EAPF 212
P+ D +A VRLLV S A +IGK G IK ++ A V+V ++ E
Sbjct: 36 PKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVC 95
Query: 213 YVTEDERIV 221
VT DE+ V
Sbjct: 96 TVTADEKTV 104
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 139 (54.0 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 34/77 (44%), Positives = 46/77 (59%)
Query: 337 GPIVT-QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGT 395
GP+ T Q+T IP IIG GG I IR+ SGA IT+++S G P+ I + IKGT
Sbjct: 314 GPVTTAQVT----IPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQPERI-ITIKGT 368
Query: 396 SSQVQLAQQLIQEYMNN 412
Q+ AQ L+Q+ + N
Sbjct: 369 EQQIHSAQYLLQQCVRN 385
Score = 115 (45.5 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 36/126 (28%), Positives = 64/126 (50%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++V G+IIG+ GE IK+ + A ++V D ++P+R+ ++ E+
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTVTADEK-------- 102
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + K V LP ++ S C VR+LV + A LIG+ GS IK ++E A
Sbjct: 103 --TVLNILKDV--LPR--LEDNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSA 156
Query: 201 SVRVLS 206
+++ +
Sbjct: 157 RLKIFT 162
Score = 96 (38.9 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV-SSPDRIVLISGKEE 132
C RM+V G++IGR G IK+ E AR+K+ G S DR+++ SG+++
Sbjct: 125 CEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQK 180
Score = 72 (30.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 155 PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSAD--EAPF 212
P+ D +A VRLLV S A +IGK G IK ++ A V+V ++ E
Sbjct: 36 PKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVC 95
Query: 213 YVTEDERIV 221
VT DE+ V
Sbjct: 96 TVTADEKTV 104
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 170 (64.9 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 48/132 (36%), Positives = 77/132 (58%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G A V A
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST---AAVFHA 75
Query: 141 MDA-AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+ A ++ + + P N + ++RL++P++Q +LIGK G+ IK I+E +G
Sbjct: 76 VSMIAFKLDEDLCAAPANGGNVSRPPV---TLRLVIPASQCGSLIGKAGTKIKEIRETTG 132
Query: 200 ASVRVLSADEAP 211
A V+V + D P
Sbjct: 133 AQVQV-AGDLLP 143
Score = 74 (31.1 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 35/108 (32%), Positives = 48/108 (44%)
Query: 314 GISIYGQ----DPA----LSTIRSSALGRASGPIVTQI---TQTMQIPISYAEDIIG--V 360
G S+ GQ PA L + S A+ A+ +V + TQT D+IG +
Sbjct: 198 GFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVI 257
Query: 361 G--GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
G G+ I IR+ SGA I + E V I G+ + LAQ LI
Sbjct: 258 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI 305
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 158 (60.7 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 47/131 (35%), Positives = 77/131 (58%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+ G L T E + ARI + +G + P+RIV I+G P + A
Sbjct: 17 RLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEG--NCPERIVTITG---PTDAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ +K + + ++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA
Sbjct: 72 F--AMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 89 (36.4 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 332 LGRASGPIVTQITQT--MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
+G++SG + T + IP IIG GT I IR+ SGA I + + E
Sbjct: 249 MGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ 308
Query: 390 VEIKGTSSQVQLAQQLI 406
+ I GT + + LAQ LI
Sbjct: 309 ITITGTPANISLAQYLI 325
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 166 (63.5 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 44/131 (33%), Positives = 78/131 (59%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ A I + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGAGINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + V + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 FAMIIDKLEEV--ISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 77 (32.2 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 242 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 300
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 301 INVRLSSETGGMGSS 315
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 172 (65.6 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 44/131 (33%), Positives = 78/131 (59%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTTAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ K + + ++ A+ ++R++VP++Q +LIGK G IK I+E++GA
Sbjct: 72 FSMIIE--KLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 86 (35.3 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 25/96 (26%), Positives = 47/96 (48%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPD-- 386
SS++ ++ +T + +P S +IG GG I+ IR ++GA + V LP+
Sbjct: 84 SSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNST 142
Query: 387 EITVEIKGTS-SQVQLAQQLIQEYMNNHKESITSSY 421
E + I GT S ++ +Q+ + + + +T Y
Sbjct: 143 ERAITIAGTPLSIIECVKQICVVMLESPPKGVTIPY 178
Score = 70 (29.7 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+ + + LA+ L
Sbjct: 245 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSSDR-QVTITGSPASISLAEYL 303
Query: 406 IQEYMNNHKESITSS 420
I +++ + ++
Sbjct: 304 INARLSSEATGMAAN 318
Score = 70 (29.7 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E SGA + +
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 49
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 170 (64.9 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 48/132 (36%), Positives = 77/132 (58%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G A V A
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST---AAVFHA 75
Query: 141 MDA-AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+ A ++ + + P N + ++RL++P++Q +LIGK G+ IK I+E +G
Sbjct: 76 VSMIAFKLDEDLCAAPANGGNVSRPPV---TLRLVIPASQCGSLIGKAGTKIKEIRETTG 132
Query: 200 ASVRVLSADEAP 211
A V+V + D P
Sbjct: 133 AQVQV-AGDLLP 143
Score = 77 (32.2 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 41/138 (29%), Positives = 56/138 (40%)
Query: 314 GISIYGQ----DPA----LSTIRSSALGRASGPIVTQI---TQTMQIPISYAEDIIG--V 360
G S+ GQ PA L + A+ AS +V + TQT D+IG +
Sbjct: 198 GFSVQGQYGTVTPAEVTKLQQLSGHAVPFASPSMVPGLDPSTQTSSQEFLVPNDLIGCVI 257
Query: 361 G--GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESIT 418
G G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 258 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSG 317
Query: 419 SSYGQIDTGY-RPSYPQL 435
+ G T P P L
Sbjct: 318 GTPGSAPTDLPAPFSPPL 335
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 171 (65.3 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 52/135 (38%), Positives = 81/135 (60%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G A V A
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST---AAVFHA 75
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFC----SVRLLVPSTQAINLIGKQGSLIKSIQE 196
+ ++ FK L E+ A A+G + ++RL++P++Q +LIGK G+ IK I+E
Sbjct: 76 V--SMIAFK----LDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 197 NSGASVRVLSADEAP 211
+GA V+V + D P
Sbjct: 130 TTGAQVQV-AGDLLP 143
Score = 75 (31.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 36/118 (30%), Positives = 50/118 (42%)
Query: 314 GISIYGQ----DPA----LSTIRSSALGRASGPIVTQI---TQTMQIPISYAEDIIG--V 360
G S+ GQ PA L + A+ AS +V + TQT D+IG +
Sbjct: 198 GFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQTSSQEFLVPNDLIGCVI 257
Query: 361 G--GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
G G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 258 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 170 (64.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 48/132 (36%), Positives = 77/132 (58%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G A V A
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST---AAVFHA 75
Query: 141 MDA-AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+ A ++ + + P N + ++RL++P++Q +LIGK G+ IK I+E +G
Sbjct: 76 VSMIAFKLDEDLCAAPANGGNVSRPPV---TLRLVIPASQCGSLIGKAGTKIKEIRETTG 132
Query: 200 ASVRVLSADEAP 211
A V+V + D P
Sbjct: 133 AQVQV-AGDLLP 143
Score = 76 (31.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 36/118 (30%), Positives = 51/118 (43%)
Query: 314 GISIYGQ----DPA----LSTIRSSALGRASGPIVTQI---TQTMQIPISYAEDIIG--V 360
G S+ GQ PA L + S A+ A+ +V + TQT D+IG +
Sbjct: 198 GFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVI 257
Query: 361 G--GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
G G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 258 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 183 (69.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 49/131 (37%), Positives = 79/131 (60%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + DG SSP+RIV I+G E + A
Sbjct: 20 RLLMHGKEVGSIIGKKGETVKKMREESGARINISDG--SSPERIVTITGASEV---IFKA 74
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
F+ + + +++ + ++RL+ P++Q +LIGK GS IK I+E++GA
Sbjct: 75 FAMIAEKFEE--DILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGA 132
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 133 QVQV-AGDLLP 142
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 171 (65.3 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 52/135 (38%), Positives = 81/135 (60%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G A V A
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST---AAVFHA 75
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFC----SVRLLVPSTQAINLIGKQGSLIKSIQE 196
+ ++ FK L E+ A A+G + ++RL++P++Q +LIGK G+ IK I+E
Sbjct: 76 V--SMIAFK----LDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 197 NSGASVRVLSADEAP 211
+GA V+V + D P
Sbjct: 130 TTGAQVQV-AGDLLP 143
Score = 74 (31.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 34/118 (28%), Positives = 49/118 (41%)
Query: 314 GISIYGQDPALSTIRSSALGRASG-----------PIVTQITQTMQIPISYAEDIIG--V 360
G S+ GQ A++ + L + SG P + TQT D+IG +
Sbjct: 198 GFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGMDPSTQTSSQEFLVPNDLIGCVI 257
Query: 361 G--GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
G G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 258 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 170 (64.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 48/132 (36%), Positives = 77/132 (58%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G A V A
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST---AAVFHA 75
Query: 141 MDA-AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+ A ++ + + P N + ++RL++P++Q +LIGK G+ IK I+E +G
Sbjct: 76 VSMIAFKLDEDLCAAPANGGNVSRPPV---TLRLVIPASQCGSLIGKAGTKIKEIRETTG 132
Query: 200 ASVRVLSADEAP 211
A V+V + D P
Sbjct: 133 AQVQV-AGDLLP 143
Score = 75 (31.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 27/93 (29%), Positives = 38/93 (40%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
+Q +P +IG G+ I IR+ SGA I + E V I G+ + LAQ
Sbjct: 243 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 302
Query: 404 QLIQEYMNNHKESITSSYGQIDTGY-RPSYPQL 435
LI + K + + G T P P L
Sbjct: 303 YLITACLETAKSTSGGTPGSAPTDLPAPFSPPL 335
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 170 (64.9 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 48/132 (36%), Positives = 77/132 (58%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G A V A
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST---AAVFHA 75
Query: 141 MDA-AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+ A ++ + + P N + ++RL++P++Q +LIGK G+ IK I+E +G
Sbjct: 76 VSMIAFKLDEDLCAAPANGGNVSRPPV---TLRLVIPASQCGSLIGKAGTKIKEIRETTG 132
Query: 200 ASVRVLSADEAP 211
A V+V + D P
Sbjct: 133 AQVQV-AGDLLP 143
Score = 71 (30.1 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
+Q +P +IG G+ I IR+ SGA I + E V I G+ + LAQ
Sbjct: 244 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 303
Query: 404 QLIQEYMNNHKES 416
LI + K +
Sbjct: 304 YLITACLETAKST 316
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 200 (75.5 bits), Expect = 7.2e-13, P = 7.2e-13
Identities = 81/339 (23%), Positives = 150/339 (44%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVL-ISGKEEPEAPVSP 139
++I K+G +IG+ G IK + + + I+V D + D V+ ++ E P+ S
Sbjct: 320 KVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSM 379
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A++A + + ++++ E+ V ++LLV S +IGK GS+I I++ +
Sbjct: 380 AVEAVLLLQEKINDEDEDKV----------KMQLLVSSKVIGCIIGKSGSIISEIRKRTK 429
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQXXXXXXXXXXXXXXXHLRK-FLVDQGVLPLFEKTY 258
A + + + P ++ +VE+ LR L D+ +
Sbjct: 430 ADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRET---GSRNQ 486
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRL----SG 314
+ S+ + + ++ A QS +S+ P S+ R P+ S + G
Sbjct: 487 PPARSENNNFFSSSSSNTGLALPQSFMSS--VPQVA--SVDFNRRPETGSSMSMLPSSGG 542
Query: 315 ISIYGQDPALSTIRSSALGRAS---GPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
I YG P +T S +S G + T ++IP + ++G GG +++NIRR
Sbjct: 543 IYGYGSFPVGNTSYGSNSSYSSNLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRI 602
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
SGA+I + +S+ I GTS Q + A+ L Q ++
Sbjct: 603 SGAMIEISDSKNSHGGRVALISGTSEQKRTAENLFQAFI 641
Score = 162 (62.1 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 49/145 (33%), Positives = 79/145 (54%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKEEPE-- 134
V+R++ P +GS+IG+ G++I ++TRARIKV+D +R++ I S E+ +
Sbjct: 45 VYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIV 104
Query: 135 ----------APVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINL 183
P+ A A ++V V+ L + K F RLLVPS+Q +
Sbjct: 105 DIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIV 164
Query: 184 IGKQGSLIKSIQENSGASVRVLSAD 208
IGK GS+IK+I+ + A+V+V+S D
Sbjct: 165 IGKSGSIIKNIRGRTRANVKVVSKD 189
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 175 (66.7 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
Score = 79 (32.9 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPD-- 386
SS++ ++ +T + +P S +IG GG I+ IR ++GA + V LP+
Sbjct: 84 SSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNST 142
Query: 387 EITVEIKGT-SSQVQLAQQLIQEYMNNHKESITSSY 421
E + I G S ++ +Q+ + + + +T Y
Sbjct: 143 ERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPY 178
Score = 70 (29.7 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++RLL+ + ++IGK+G +K ++E SGA + +
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 49
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 175 (66.7 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 127 (49.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 39/96 (40%), Positives = 50/96 (52%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + IP A IIG GG I+ IR SGA I +
Sbjct: 332 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 387
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
E G D I + I GT Q+Q AQ L+Q + +
Sbjct: 388 DEPLEGSEDRI-ITITGTQDQIQNAQYLLQNSVKQY 422
Score = 114 (45.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 38/148 (25%), Positives = 70/148 (47%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E +
Sbjct: 43 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSISADTETIGEILKK 100
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + ++ G +D D C +RLL+ + A +IG +G+ IK ++EN+
Sbjct: 101 IIPTLEEYQHYKG---SDFD--------CELRLLIHQSLAGGIIGVKGAKIKELRENTQT 149
Query: 201 SVRVL------SADEAPFYVTEDERIVE 222
++++ S D + +R+VE
Sbjct: 150 TIKLFQECCPHSTDRVVLIGGKPDRVVE 177
Score = 90 (36.7 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIV 125
E + + G C R+++ G IIG KG IK+ E+T+ IK+ S DR+V
Sbjct: 107 EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 166
Query: 126 LISGKEE 132
LI GK +
Sbjct: 167 LIGGKPD 173
Score = 79 (32.9 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 348 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSED-RII 399
Score = 56 (24.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + ASV V
Sbjct: 42 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 75
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 127 (49.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 39/96 (40%), Positives = 50/96 (52%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + IP A IIG GG I+ IR SGA I +
Sbjct: 332 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 387
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
E G D I + I GT Q+Q AQ L+Q + +
Sbjct: 388 DEPLEGSEDRI-ITITGTQDQIQNAQYLLQNSVKQY 422
Score = 114 (45.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 38/148 (25%), Positives = 70/148 (47%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E +
Sbjct: 43 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSISADTETIGEILKK 100
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + ++ G +D D C +RLL+ + A +IG +G+ IK ++EN+
Sbjct: 101 IIPTLEEYQHYKG---SDFD--------CELRLLIHQSLAGGIIGVKGAKIKELRENTQT 149
Query: 201 SVRVL------SADEAPFYVTEDERIVE 222
++++ S D + +R+VE
Sbjct: 150 TIKLFQECCPHSTDRVVLIGGKPDRVVE 177
Score = 90 (36.7 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIV 125
E + + G C R+++ G IIG KG IK+ E+T+ IK+ S DR+V
Sbjct: 107 EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 166
Query: 126 LISGKEE 132
LI GK +
Sbjct: 167 LIGGKPD 173
Score = 79 (32.9 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 348 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSED-RII 399
Score = 56 (24.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + ASV V
Sbjct: 42 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 75
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 126 (49.4 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 39/90 (43%), Positives = 48/90 (53%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + IP A IIG GG I+ IR SGA I +
Sbjct: 332 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 387
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQ 407
E G D I + I GT Q+Q AQ L+Q
Sbjct: 388 DEPLEGSEDRI-ITITGTQDQIQNAQYLLQ 416
Score = 114 (45.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 38/148 (25%), Positives = 70/148 (47%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E +
Sbjct: 43 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSISADTETIGEILKK 100
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + ++ G +D D C +RLL+ + A +IG +G+ IK ++EN+
Sbjct: 101 IIPTLEEYQHYKG---SDFD--------CELRLLIHQSLAGGIIGVKGAKIKELRENTQT 149
Query: 201 SVRVL------SADEAPFYVTEDERIVE 222
++++ S D + +R+VE
Sbjct: 150 TIKLFQECCPHSTDRVVLIGGKPDRVVE 177
Score = 90 (36.7 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIV 125
E + + G C R+++ G IIG KG IK+ E+T+ IK+ S DR+V
Sbjct: 107 EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 166
Query: 126 LISGKEE 132
LI GK +
Sbjct: 167 LIGGKPD 173
Score = 79 (32.9 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 348 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSED-RII 399
Score = 56 (24.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + ASV V
Sbjct: 42 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 75
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 127 (49.8 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 39/96 (40%), Positives = 50/96 (52%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + IP A IIG GG I+ IR SGA I +
Sbjct: 331 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 386
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
E G D I + I GT Q+Q AQ L+Q + +
Sbjct: 387 DEPLEGSEDRI-ITITGTQDQIQNAQYLLQNSVKQY 421
Score = 112 (44.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 38/148 (25%), Positives = 70/148 (47%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E +
Sbjct: 43 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSISADIETIGEILKK 100
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + ++ G +D D C +RLL+ + A +IG +G+ IK ++EN+
Sbjct: 101 IIPTLEEYQHYKG---SDFD--------CELRLLIHQSLAGGIIGVKGAKIKELRENTQT 149
Query: 201 SVRVL------SADEAPFYVTEDERIVE 222
++++ S D + +R+VE
Sbjct: 150 TIKLFQECCPHSTDRVVLIGGKPDRVVE 177
Score = 90 (36.7 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIV 125
E + + G C R+++ G IIG KG IK+ E+T+ IK+ S DR+V
Sbjct: 107 EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 166
Query: 126 LISGKEE 132
LI GK +
Sbjct: 167 LIGGKPD 173
Score = 79 (32.9 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 347 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSED-RII 398
Score = 56 (24.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + ASV V
Sbjct: 42 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 75
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 128 (50.1 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 39/98 (39%), Positives = 51/98 (52%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + IP A IIG GG I+ IR SGA I +
Sbjct: 368 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 423
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
E G D I + I GT Q+Q AQ L+Q + + +
Sbjct: 424 DEPLEGSEDRI-ITITGTQDQIQNAQYLLQNSVKQYAD 460
Score = 112 (44.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 44/161 (27%), Positives = 79/161 (49%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS-- 138
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E +
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSISADIETIGEILKK 103
Query: 139 --PAMDAAVRVFK--RVSGLP-END-VDA----KASGAAF-CSVRLLVPSTQAINLIGKQ 187
P ++ +++ S LP E+D V+ G+ F C +RLL+ + A +IG +
Sbjct: 104 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVK 163
Query: 188 GSLIKSIQENSGASVRVL------SADEAPFYVTEDERIVE 222
G+ IK ++EN+ ++++ S D + +R+VE
Sbjct: 164 GAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVE 204
Score = 93 (37.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 52 SALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARI 111
S LP + DA + + G C R+++ G IIG KG IK+ E+T+ I
Sbjct: 121 SQLPLES--DAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 112 KVLDGPV-SSPDRIVLISGKEE 132
K+ S DR+VLI GK +
Sbjct: 179 KLFQECCPQSTDRVVLIGGKPD 200
Score = 79 (32.9 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 384 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSED-RII 435
Score = 56 (24.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + ASV V
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 78
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 127 (49.8 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 39/96 (40%), Positives = 50/96 (52%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + IP A IIG GG I+ IR SGA I +
Sbjct: 349 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 404
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
E G D I + I GT Q+Q AQ L+Q + +
Sbjct: 405 DEPLEGSEDRI-ITITGTQDQIQNAQYLLQNSVKQY 439
Score = 112 (44.5 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 44/161 (27%), Positives = 79/161 (49%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS-- 138
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E +
Sbjct: 49 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSISADIETIGEILKK 106
Query: 139 --PAMDAAVRVFK--RVSGLP-END-VDA----KASGAAF-CSVRLLVPSTQAINLIGKQ 187
P ++ +++ S LP E+D V+ G+ F C +RLL+ + A +IG +
Sbjct: 107 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVK 166
Query: 188 GSLIKSIQENSGASVRVL------SADEAPFYVTEDERIVE 222
G+ IK ++EN+ ++++ S D + +R+VE
Sbjct: 167 GAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVE 207
Score = 93 (37.8 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 52 SALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARI 111
S LP + DA + + G C R+++ G IIG KG IK+ E+T+ I
Sbjct: 124 SQLPLES--DAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 181
Query: 112 KVLDGPV-SSPDRIVLISGKEE 132
K+ S DR+VLI GK +
Sbjct: 182 KLFQECCPQSTDRVVLIGGKPD 203
Score = 79 (32.9 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 365 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSED-RII 416
Score = 56 (24.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + ASV V
Sbjct: 48 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 81
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 127 (49.8 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 39/96 (40%), Positives = 50/96 (52%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + IP A IIG GG I+ IR SGA I +
Sbjct: 368 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 423
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
E G D I + I GT Q+Q AQ L+Q + +
Sbjct: 424 DEPLEGSEDRI-ITITGTQDQIQNAQYLLQNSVKQY 458
Score = 112 (44.5 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 44/161 (27%), Positives = 79/161 (49%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS-- 138
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E +
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSISADIETIGEILKK 103
Query: 139 --PAMDAAVRVFK--RVSGLP-END-VDA----KASGAAF-CSVRLLVPSTQAINLIGKQ 187
P ++ +++ S LP E+D V+ G+ F C +RLL+ + A +IG +
Sbjct: 104 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVK 163
Query: 188 GSLIKSIQENSGASVRVL------SADEAPFYVTEDERIVE 222
G+ IK ++EN+ ++++ S D + +R+VE
Sbjct: 164 GAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE 204
Score = 92 (37.4 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 52 SALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARI 111
S LP + DA + + G C R+++ G IIG KG IK+ E+T+ I
Sbjct: 121 SQLPLES--DAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 112 KVLDGPVS-SPDRIVLISGKEE 132
K+ S DR+VLI GK +
Sbjct: 179 KLFQECCPHSTDRVVLIGGKPD 200
Score = 79 (32.9 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 384 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSED-RII 435
Score = 56 (24.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + ASV V
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 78
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 127 (49.8 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 39/96 (40%), Positives = 50/96 (52%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + IP A IIG GG I+ IR SGA I +
Sbjct: 368 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 423
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
E G D I + I GT Q+Q AQ L+Q + +
Sbjct: 424 DEPLEGSEDRI-ITITGTQDQIQNAQYLLQNSVKQY 458
Score = 112 (44.5 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 44/161 (27%), Positives = 79/161 (49%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS-- 138
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E +
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSISADIETIGEILKK 103
Query: 139 --PAMDAAVRVFK--RVSGLP-END-VDA----KASGAAF-CSVRLLVPSTQAINLIGKQ 187
P ++ +++ S LP E+D V+ G+ F C +RLL+ + A +IG +
Sbjct: 104 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVK 163
Query: 188 GSLIKSIQENSGASVRVL------SADEAPFYVTEDERIVE 222
G+ IK ++EN+ ++++ S D + +R+VE
Sbjct: 164 GAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE 204
Score = 92 (37.4 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 52 SALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARI 111
S LP + DA + + G C R+++ G IIG KG IK+ E+T+ I
Sbjct: 121 SQLPLES--DAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 112 KVLDGPVS-SPDRIVLISGKEE 132
K+ S DR+VLI GK +
Sbjct: 179 KLFQECCPHSTDRVVLIGGKPD 200
Score = 79 (32.9 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 384 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSED-RII 435
Score = 56 (24.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + ASV V
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 78
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 127 (49.8 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 39/96 (40%), Positives = 50/96 (52%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + IP A IIG GG I+ IR SGA I +
Sbjct: 368 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 423
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
E G D I + I GT Q+Q AQ L+Q + +
Sbjct: 424 DEPLEGSEDRI-ITITGTQDQIQNAQYLLQNSVKQY 458
Score = 112 (44.5 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 44/161 (27%), Positives = 79/161 (49%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS-- 138
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E +
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSISADIETIGEILKK 103
Query: 139 --PAMDAAVRVFK--RVSGLP-END-VDA----KASGAAF-CSVRLLVPSTQAINLIGKQ 187
P ++ +++ S LP E+D V+ G+ F C +RLL+ + A +IG +
Sbjct: 104 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVK 163
Query: 188 GSLIKSIQENSGASVRVL------SADEAPFYVTEDERIVE 222
G+ IK ++EN+ ++++ S D + +R+VE
Sbjct: 164 GAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE 204
Score = 92 (37.4 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 52 SALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARI 111
S LP + DA + + G C R+++ G IIG KG IK+ E+T+ I
Sbjct: 121 SQLPLES--DAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 112 KVLDGPVS-SPDRIVLISGKEE 132
K+ S DR+VLI GK +
Sbjct: 179 KLFQECCPHSTDRVVLIGGKPD 200
Score = 79 (32.9 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 384 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSED-RII 435
Score = 56 (24.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + ASV V
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 78
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 170 (64.9 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 48/132 (36%), Positives = 77/132 (58%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G A V A
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST---AAVFHA 75
Query: 141 MDA-AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+ A ++ + + P N + ++RL++P++Q +LIGK G+ IK I+E +G
Sbjct: 76 VSMIAFKLDEDLCAAPANGGNVSRPPV---TLRLVIPASQCGSLIGKAGTKIKEIRETTG 132
Query: 200 ASVRVLSADEAP 211
A V+V + D P
Sbjct: 133 AQVQV-AGDLLP 143
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 191 (72.3 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 59/178 (33%), Positives = 89/178 (50%)
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPV 137
CV I P VG +IG+ G I + ++T A I+V D I+ IS KE E
Sbjct: 270 CVC-FICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ- 327
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
SPA++AA+R+ +R S V A+ A S RLLV S+Q LIGK G++I ++
Sbjct: 328 SPAVNAAIRLQQRCS----EKVGKDANDLAI-STRLLVSSSQIGCLIGKGGAVISEMRSV 382
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQXXXXXXXXXXXXXXXHLR--KFLVDQGVLPL 253
+ A++R+L ++ P EDE +V++ LR F +D G++ L
Sbjct: 383 TRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 440
Score = 153 (58.9 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 45/144 (31%), Positives = 75/144 (52%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV-LISGKEEPE--- 134
V+R + PV K GSIIG+ GE+ K+ +T++ +++ + +R+V + S EE
Sbjct: 45 VYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFG 104
Query: 135 ---APVSPAMDAAVRVFKRVSGLPENDV----DAKASGAAFCSVRLLVPSTQAINLIGKQ 187
V PA+DA +V V + D D +VR+LVPS Q +IGK
Sbjct: 105 DDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKG 164
Query: 188 GSLIKSIQENSGASVRVLSADEAP 211
G +I++++ ++ A +RV+ D P
Sbjct: 165 GQVIQNLRNDTNAQIRVIK-DHLP 187
Score = 57 (25.1 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 32/129 (24%), Positives = 54/129 (41%)
Query: 320 QDPALST-IR-----SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
Q PA++ IR S +G+ + + I+ + + S +IG GG I +R +
Sbjct: 327 QSPAVNAAIRLQQRCSEKVGKDANDLA--ISTRLLVSSSQIGCLIGKGGAVISEMRSVTR 384
Query: 374 AIITVQESRGLP-----DEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQI--DT 426
A I + + +P DE V+I G+ A L Q + S +G + T
Sbjct: 385 ANIRILQKEDVPKIAREDEEMVQITGSPDAAMKA--LTQVILRLRANSFDMDHGLVLLPT 442
Query: 427 GYRPSYPQL 435
+ P PQ+
Sbjct: 443 SF-PYIPQV 450
Score = 56 (24.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 350 PISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEI 392
P +IG GG I IR+ +GA I V S D+ + I
Sbjct: 276 PAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFI 318
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 125 (49.1 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 42/118 (35%), Positives = 58/118 (49%)
Query: 301 EREPQLESRYR-LSGISIYGQDPALSTIRSSALGRAS---GPIVTQITQTMQIPISYAED 356
+R + RY +SG Y + + +S G S GP++T TQ + IP A
Sbjct: 314 DRRGRPGDRYESMSGGG-YDNNSSWEPFQSGGRGSYSDIGGPVIT--TQ-VTIPKDLAGS 369
Query: 357 IIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
IIG GG I+ IR SGA I + E G D I + I GT Q+Q AQ L+Q + +
Sbjct: 370 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRI-ITITGTQDQIQNAQYLLQNSVKQY 426
Score = 111 (44.1 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 38/148 (25%), Positives = 70/148 (47%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ G++IG+ G+ IK D A + V D S P+RI+ +S + +
Sbjct: 47 RVLLRSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSVSADIDTIGEILLK 104
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + ++ SG D D C +RLL+ + A +IG +G+ IK ++EN+
Sbjct: 105 IIPTLEEYQHYSG---TDFD--------CELRLLIHQSLAGGIIGVKGAKIKELRENTQT 153
Query: 201 SVRVL------SADEAPFYVTEDERIVE 222
++++ S D + ER+VE
Sbjct: 154 TIKLFQECCPHSTDRVVLVGGKPERVVE 181
Score = 93 (37.8 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIV 125
E + + G C R+++ G IIG KG IK+ E+T+ IK+ S DR+V
Sbjct: 111 EYQHYSGTDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 170
Query: 126 LISGKEE 132
L+ GK E
Sbjct: 171 LVGGKPE 177
Score = 78 (32.5 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 352 GGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSED-RII 403
Score = 54 (24.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + ASV V
Sbjct: 46 LRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSV 79
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 184 (69.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 59/168 (35%), Positives = 90/168 (53%)
Query: 41 SENTEH-TTESDSALPQSTGPDAAAVPEEKKWPGWPGHCV-FRMIVPVLKVGSIIGRKGE 98
+ NT + +T SD L P ++ P E P + R+++ +VGSIIG+KG+
Sbjct: 37 TRNTANGSTSSDHLLGD---PSSSCSPRETS-PSTTSLVLTIRLLMQGKEVGSIIGKKGD 92
Query: 99 LIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND 158
IKK E++ A+I + DG S P+RIV I+G + A + F+ L N
Sbjct: 93 QIKKIREESGAKINISDG--SCPERIVTITGTL---GVIGKAFNMVCNKFEEDMLLLPNS 147
Query: 159 VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLS 206
V ++R++VP+TQ +LIGK GS IK I+E +GAS++V S
Sbjct: 148 VPKPP-----ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVAS 190
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 139 (54.0 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 48/175 (27%), Positives = 82/175 (46%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIVLISGKEEPEAPV 137
VF++I + G IIG++G +I+ +T A I V P+ S +R+V +S +E E+
Sbjct: 278 VFKIIFTSVVAGGIIGKQGTIIRALQNETGASISV-GAPLKVSGERVVTVSARENLESRY 336
Query: 138 SPAMDAAVRVFKRVSGLP-ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
S A +A VF R + E + A +LLVPS A N G+ I
Sbjct: 337 SHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFA-NSFNGNGNREAIIA- 394
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQXXXXXXXXXXXXXXXHLRKFLVDQGVL 251
+GA V + ++ +++E+E ++E++ LR+ L+ + VL
Sbjct: 395 -TGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVL 448
Score = 95 (38.5 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEI 388
SS R+ G V +IT + + + G GT ++N+++ SGA + V++ G E
Sbjct: 550 SSLPPRSKGVSVRKITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPTGT--EA 607
Query: 389 TVEIKGTSSQVQLAQQLIQEYMNN 412
TV I G Q + A LI+ + +
Sbjct: 608 TVLISGNPEQARTAMSLIESILTD 631
Score = 79 (32.9 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 48/197 (24%), Positives = 80/197 (40%)
Query: 122 DRIVLISGKEEPE---APVSPAMDAAVRVFKRV-SGLPENDVDAKASGA---AFCSVRLL 174
DR+ SG E + VS A A +RV +R L D G A+C + L
Sbjct: 88 DRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGI--L 145
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQXXXXXXXXXX 234
Q ++G G ++ ++ NSGA +RVL P T+++ ++++
Sbjct: 146 ADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGTKNDELIQITGDVLAVKKAL 202
Query: 235 XXXXXHLRKFLVDQGVLP-LFEKTYNA----SISQERQVETWAD--KSSLHAATQSAIST 287
+++ G P L K Y + S++ E + + SSL AT+ S
Sbjct: 203 VMVSSYIQNNAPLNGYPPPLSIKGYESLSTDGNSEDPHSEFFPNLRSSSLSNATEIVASN 262
Query: 288 EYTP-----STRRESLF 299
+ P ST R+ +F
Sbjct: 263 RHLPYDGGNSTERKVVF 279
Score = 71 (30.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 30/115 (26%), Positives = 49/115 (42%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDR-IVLISGKEEP 133
P R++ +G IIG G ++ K +T +I + PV+ D +V I G
Sbjct: 22 PDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHC-ESPVNGSDHWVVFIVGS--- 77
Query: 134 EAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
V+ ++ RV + G E+ V + S A +R+L S + L K G
Sbjct: 78 -TAVNQSILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSW--VVLAAKDG 129
Score = 45 (20.9 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 30/146 (20%), Positives = 58/146 (39%)
Query: 282 QSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVT 341
++ +S Y + R ++ +P + R +S+ P L +RS A S ++
Sbjct: 452 RARVSNPYESAGGRSQIY-NLQPSQQDASRGDSLSVSAAVPDLKMVRSGAEVLKSNSVMH 510
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQL 401
T+ ++ + D E++ T G S G + KG S + ++
Sbjct: 511 --TEVLK-EVDELNDFTLPQSLLEEDL--TQGMKQLQMSSNGDVSSLPPRSKGVSVR-KI 564
Query: 402 AQQLIQEYMNNHKESITSSYGQIDTG 427
+L E K+++ S YG+ TG
Sbjct: 565 TLELAVE-----KDALGSLYGRDGTG 585
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 127 (49.8 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 39/96 (40%), Positives = 50/96 (52%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + IP A IIG GG I+ IR SGA I +
Sbjct: 344 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 399
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
E G D I + I GT Q+Q AQ L+Q + +
Sbjct: 400 DEPLEGSEDRI-ITITGTQDQIQNAQYLLQNSVKQY 434
Score = 100 (40.3 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 37/148 (25%), Positives = 67/148 (45%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E +
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSISADIETIGEILKK 103
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + ++ G +D D C +RLL+ + A +IG +G+ IK N+
Sbjct: 104 IIPTLEEYQHYKG---SDFD--------CELRLLIHQSLAGGIIGVKGAKIKKFGGNTQT 152
Query: 201 SVRVL------SADEAPFYVTEDERIVE 222
++++ S D + +R+VE
Sbjct: 153 TIKLFQECCPHSTDRVVLIGGKPDRVVE 180
Score = 86 (35.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIV 125
E + + G C R+++ G IIG KG IKK +T+ IK+ S DR+V
Sbjct: 110 EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQECCPHSTDRVV 169
Query: 126 LISGKEE 132
LI GK +
Sbjct: 170 LIGGKPD 176
Score = 79 (32.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 360 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSED-RII 411
Score = 56 (24.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + ASV V
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 78
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 175 (66.7 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 46/131 (35%), Positives = 80/131 (61%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 130 QVQV-AGDMLP 139
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 152 (58.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 45/146 (30%), Positives = 77/146 (52%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSPDRIVLISGKEEPEAPV 137
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E +
Sbjct: 102 KILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA---I 158
Query: 138 SPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
M+ + + L D D+K + V++LVP++ A +IGK G+ IK I+
Sbjct: 159 MVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIK 218
Query: 196 ENSGASVRVLSADEAPFYVTEDERIV 221
E SG+ V++ + P V+ ER +
Sbjct: 219 EESGSYVQI---SQKPTDVSLQERCI 241
Score = 73 (30.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 26/106 (24%), Positives = 50/106 (47%)
Query: 318 YGQDPALSTIRSSALGRAS-----GPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTS 372
+G T ++ LG S G + ++ ++ +++P I+G G S+ I+ S
Sbjct: 487 FGLTATTGTATTAQLGGLSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVS 546
Query: 373 GAIITVQE----SRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
GA + + + + G + I V I G S + AQ LI++ +N +
Sbjct: 547 GANVQISKKGIFAPGTRNRI-VTITGQPSAIAKAQYLIEQKINEEE 591
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 126 (49.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 43/186 (23%), Positives = 84/186 (45%)
Query: 41 SENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELI 100
S+ + S S L S ++ +P + +R++V + G +IG G++I
Sbjct: 33 SQQQQQQQPSSSTLTTSIVDQSSTLPSLQDKSNIDALINYRVLVSAKEAGCLIGTNGQVI 92
Query: 101 KKTCEDTRARIKVLDGPVSSPDRIVLISGK-EEPEAPVSPAMDAAVRV-FKRVSGLPEND 158
+T + + S +RI+ +SGK ++ +S A + + + P
Sbjct: 93 DSIRNETNTKAGISRLIPGSHERILTVSGKLDDCAKALSYFAQALINANIESYNYFPLKQ 152
Query: 159 VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDE 218
+ + + +RLL+P++Q LIG +G+ I+ +Q N S+ + S P +E
Sbjct: 153 LSSTPNTEETTILRLLIPNSQMGTLIGSKGARIQQLQNNFNISM-IASKSFLP---GSNE 208
Query: 219 RIVEMQ 224
R+VE+Q
Sbjct: 209 RLVELQ 214
Score = 94 (38.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T T+ P +IG G+ I+ +R+ SGA+I + E+ +E I G+S V A+
Sbjct: 288 TDTISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVFTITGSSHAVDKAK 347
Query: 404 QLIQEYMNNHKE 415
Q+I Y N +E
Sbjct: 348 QMI--YQNFKRE 357
>CGD|CAL0001510 [details] [associations]
symbol:PBP2 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010834 "telomere maintenance via
telomere shortening" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 CGD:CAL0001510 GO:GO:0003723
EMBL:AACQ01000046 EMBL:AACQ01000047 eggNOG:NOG315872
RefSeq:XP_718039.1 RefSeq:XP_718106.1 ProteinModelPortal:Q5A8H8
STRING:Q5A8H8 GeneID:3640267 GeneID:3640340 KEGG:cal:CaO19.13193
KEGG:cal:CaO19.5771 HOGENOM:HOG000247928 Uniprot:Q5A8H8
Length = 529
Score = 169 (64.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 55/170 (32%), Positives = 82/170 (48%)
Query: 48 TESDSALPQSTGPDAAAVP-EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCED 106
+ESD A Q+TG +++ P + P RM PV + +I+GRKGE I E
Sbjct: 129 SESDHADDQNTGSSSSSKPVSNHRDRDDPTFIQLRMYCPVKEASTIVGRKGETINHLREK 188
Query: 107 TRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA 166
RI V + P+RIV + G P V+ A RV PE D A +
Sbjct: 189 ANVRITVSENLKGVPERIVAVKG---PAENVARAFGLITRVILEE---PE-DEPASINSQ 241
Query: 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
+ +++LL+P +IGKQG + I+ENS A ++ +A+ A Y T+
Sbjct: 242 QY-NLKLLIPHPMIGFIIGKQGLKFREIEENSAAKLK--AAENALPYSTD 288
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 357 IIGVGGTSIENIRRTS-----------GAIITVQESRGLPDEITVEIKGTSSQVQLAQQL 405
+IG G +I++IR TS G + + +G+ + + + GT + +Q A L
Sbjct: 456 VIGKRGNNIKHIRETSACTYVKIEPDKGQSMMLGGGKGMTNIRKLTLTGTLNSIQTAIYL 515
Query: 406 IQEYMNNHKESIT 418
I + +N +E T
Sbjct: 516 INQRINADRERNT 528
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 124 (48.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 36/79 (45%), Positives = 46/79 (58%)
Query: 333 GRAS---GPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEI 388
GR+S GP++T TQ + IP A IIG GG I+ IR SGA I + E +G D I
Sbjct: 344 GRSSYSDGPVIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRI 400
Query: 389 TVEIKGTSSQVQLAQQLIQ 407
+ I GT Q+Q AQ L+Q
Sbjct: 401 -ITITGTQDQIQNAQYLLQ 418
Score = 98 (39.6 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 35/148 (23%), Positives = 71/148 (47%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ G++IG+ G+ IK D A + V D S P+RI+ +S A +
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALRTDYNATVSVPDS--SGPERILSVSADIPTVAEILLK 103
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + ++ G+ D D C +RLL+ + A ++IG +G+ IK +++++
Sbjct: 104 IIPTLEEYQHHKGV---DFD--------CELRLLIHQSLAGSIIGLKGAKIKELRDSTQT 152
Query: 201 SVRVL------SADEAPFYVTEDERIVE 222
++++ S D + ER+V+
Sbjct: 153 TIKLFQECCPQSTDRVVLVGGKAERVVQ 180
Score = 92 (37.4 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV-SSPDRIVLISGKEE 132
C R+++ GSIIG KG IK+ + T+ IK+ S DR+VL+ GK E
Sbjct: 121 CELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQECCPQSTDRVVLVGGKAE 176
Score = 76 (31.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 355 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLQGSED-RII 401
Score = 53 (23.7 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + A+V V
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNATVSV 78
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 111 (44.1 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 35/96 (36%), Positives = 48/96 (50%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + I A IIG GG I+ +R SGA I +
Sbjct: 344 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTISKDLAGSIIGKGGRRIKQVRHESGASIKI 399
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
E G D + + I GT Q+Q A L+Q + +
Sbjct: 400 DEPLEGSEDRV-ITITGTQDQIQNAPYLLQNSVKQY 434
Score = 110 (43.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 33/124 (26%), Positives = 62/124 (50%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E +
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPDS--SGPERILSISADIETIGEILKK 103
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + ++ G +D D C +RLL+ + A +IG +G+ IK ++EN+
Sbjct: 104 IIPTLEEYQHYKG---SDFD--------CELRLLIHQSLAGGIIGVKGAKIKELRENTQT 152
Query: 201 SVRV 204
++++
Sbjct: 153 TIKL 156
Score = 93 (37.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP-DRIV 125
E + + G C R+++ G IIG KG IK+ E+T+ IK+ P DR+V
Sbjct: 110 EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHPTDRVV 169
Query: 126 LISGKEE 132
LI GK +
Sbjct: 170 LIGGKPD 176
Score = 68 (29.0 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ + A ++IGK G IK ++ SGAS+++ DE P +ED R++
Sbjct: 360 GGPIITTQVTISKDLAGSIIGKGGRRIKQVRHESGASIKI---DE-PLEGSED-RVI 411
Score = 55 (24.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK++ + ASV V
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALHTDYNASVSV 78
>ZFIN|ZDB-GENE-030131-4357 [details] [associations]
symbol:khsrp "KH-type splicing regulatory protein"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-030131-4357 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:AL929150 IPI:IPI00482681
Ensembl:ENSDART00000038330 ArrayExpress:F1QXP8 Bgee:F1QXP8
Uniprot:F1QXP8
Length = 666
Score = 143 (55.4 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 49/171 (28%), Positives = 83/171 (48%)
Query: 42 ENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIK 101
E+ + ++ D+A S G AA+ ++ P +R VP VG IIGR GE I
Sbjct: 74 ESKKMASDRDNAAALSIGAQLAALSKQSVRPSSMTE-EYR--VPDGMVGLIIGRGGEQIN 130
Query: 102 KTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA 161
K +D+ ++++ PDR V I+G PEA + A + R G P + ++
Sbjct: 131 KIQQDSGCKVQIAPDSGGLPDRSVSITGG--PEA-IQKAKMMLDDIVSRGRGTPPSFHES 187
Query: 162 KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS-VRVLSADEAP 211
+G+ +++P+ +A +IGK G IK +QE +G + + A + P
Sbjct: 188 -TNGSGHMQ-EMVIPAGKAGLIIGKGGETIKQLQERAGVKMILIQDASQGP 236
Score = 87 (35.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 26/75 (34%), Positives = 36/75 (48%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE---EPEAPVSPA 140
VP VG +IGR GE+IKK D RI+ + PD+I I G E A +
Sbjct: 300 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGPDKIAHIMGPPDRCEHAASIINE 359
Query: 141 MDAAVRVFKRVSGLP 155
+ ++RV + G P
Sbjct: 360 LLQSIRVREEGGGGP 374
Score = 87 (35.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 34/141 (24%), Positives = 61/141 (43%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP--DRIVLISGKEEP 133
GH + M++P K G IIG+ GE IK+ E ++ ++ P D+ + I G +P
Sbjct: 192 GH-MQEMVIPAGKAGLIIGKGGETIKQLQERAGVKMILIQDASQGPNMDKPLRIIG--DP 248
Query: 134 EAPVSPAMDAAVRVFKRVS--GLPENDVDAK---------ASGAAFCSVRLLVPSTQAIN 182
V A + + + G N+ ++ G + + VP
Sbjct: 249 YK-VQQAREMVQEILRERDHPGFERNEYGSRMGGGGGGGGGGGGGGGGIEVPVPRHSVGV 307
Query: 183 LIGKQGSLIKSIQENSGASVR 203
+IG+ G +IK IQ ++G ++
Sbjct: 308 VIGRSGEMIKKIQNDAGVRIQ 328
Score = 80 (33.2 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 333 GRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEIT 389
G GP +++T IP +IG GG +++ I + +GA + + G P+
Sbjct: 395 GNWGGPPGSEMT--FSIPAHKCGLVIGRGGENVKAINQQTGAFVEISRQPPPNGDPNFKL 452
Query: 390 VEIKGTSSQVQLAQQLIQE 408
I+G+ Q+ A+QLI++
Sbjct: 453 FTIRGSPQQIDHAKQLIED 471
Score = 54 (24.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIKGTSSQVQLAQQLIQEYMNN 412
+IG G I+ I+ +G I + G PD+I I G + + A +I E + +
Sbjct: 308 VIGRSGEMIKKIQNDAGVRIQFKPDDGTGPDKIA-HIMGPPDRCEHAASIINELLQS 363
>UNIPROTKB|F8W1G6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021049
Ensembl:ENST00000546652 ArrayExpress:F8W1G6 Bgee:F8W1G6
Uniprot:F8W1G6
Length = 202
Score = 152 (58.6 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 40/116 (34%), Positives = 70/116 (60%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A
Sbjct: 14 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 68
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A+ + K + + ++ A+ ++RL+VP++Q +LIGK G IK I+E
Sbjct: 69 F--AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 122
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 127 (49.8 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 39/96 (40%), Positives = 50/96 (52%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + IP A IIG GG I+ IR SGA I +
Sbjct: 333 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 388
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
E G D I + I GT Q+Q AQ L+Q + +
Sbjct: 389 DEPLEGSEDRI-ITITGTQDQIQNAQYLLQNSVKQY 423
Score = 90 (36.7 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIV 125
E + + G C R+++ G IIG KG IK+ E+T+ IK+ S DR+V
Sbjct: 99 EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 158
Query: 126 LISGKEE 132
LI GK +
Sbjct: 159 LIGGKPD 165
Score = 84 (34.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 33/129 (25%), Positives = 58/129 (44%)
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
IK D A + V D S P+RI+ IS E + + + ++ G +D
Sbjct: 54 IKALRTDYNASVSVPDS--SGPERILSISADIETIGEILKKIIPTLEEYQHYKG---SDF 108
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL------SADEAPFY 213
D C +RLL+ + A +IG +G+ IK ++EN+ ++++ S D
Sbjct: 109 D--------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLI 160
Query: 214 VTEDERIVE 222
+ +R+VE
Sbjct: 161 GGKPDRVVE 169
Score = 79 (32.9 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
G + ++ +P A ++IGK G IK I+ SGAS+++ DE P +ED RI+
Sbjct: 349 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSED-RII 400
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 149 (57.5 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 40/118 (33%), Positives = 70/118 (59%)
Query: 94 GRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSG 153
G+KGE +KK E++ ARI + +G + P+RI+ ++G P + A A+ + K
Sbjct: 22 GKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKAF--AMIIDKLEED 74
Query: 154 LPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAP 211
+ + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA V+V + D P
Sbjct: 75 ISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP 131
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 131 (51.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 45/137 (32%), Positives = 72/137 (52%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG V M++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + ISG
Sbjct: 172 PGMSVHEMMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRISG- 228
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQ-AINL-IGK 186
+P V A D + + R G E + ++A G L VP + A+ + IG+
Sbjct: 229 -DP-FKVQQAKDMVMDLI-RDQGFREQRGEYGSRAGGGGGGGESLDVPVPRFAVGIVIGR 285
Query: 187 QGSLIKSIQENSGASVR 203
G +IK IQ ++G ++
Sbjct: 286 SGEMIKKIQNDTGVRIQ 302
Score = 115 (45.5 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 34/128 (26%), Positives = 59/128 (46%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ PDR V ++G + +
Sbjct: 96 VPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTGSPDAIMTAKRLLSE 155
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + ND G +++P+++A +IGK G IK +QE +G V+
Sbjct: 156 IVEKGRPSPAFHHND------GPGMSVHEMMIPASKAGLVIGKGGETIKQLQERAG--VK 207
Query: 204 VLSADEAP 211
++ + P
Sbjct: 208 MVMIQDGP 215
Score = 87 (35.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEI---KGTSSQVQLA 402
T +P IIG GG +I+NI + SGA I +Q + + ++I +G+ Q+ A
Sbjct: 378 TFTVPTMKTGLIIGKGGETIKNISQQSGARIELQRNPPPNSDPNIKIFTVRGSPQQIDYA 437
Query: 403 QQLIQE 408
+QL++E
Sbjct: 438 RQLVEE 443
Score = 58 (25.5 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 345 QTMQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
+++ +P+ +A I IG G I+ I+ +G I + G E +I G + Q A
Sbjct: 268 ESLDVPVPRFAVGIVIGRSGEMIKKIQNDTGVRIQFKPDDGSTPERIAQIMGPPDRAQHA 327
Query: 403 QQLIQEYMNN 412
+I + + +
Sbjct: 328 ADIITDLLRS 337
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 111 (44.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 44/169 (26%), Positives = 83/169 (49%)
Query: 56 QSTGP--DAAAVPEEKKWPGWPGHCV-FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIK 112
QST +AA E++ P + + R ++ + ++IG+ GE + + + A+
Sbjct: 83 QSTASHGEAAGNQSEQQRPQDESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCT 142
Query: 113 VLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVR 172
V D + +RI+ +SG P+ V+ A +R ++ P D + A + +R
Sbjct: 143 VSDYSRGAVERILTVSG---PQDAVAKAFGLIIRT---LNNEPL-DAASTAQSKTY-PLR 194
Query: 173 LLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
LL+P ++IGK G+ I+ IQ+ SGA L+A +A ++ + +V
Sbjct: 195 LLIPHILIGSIIGKGGTRIREIQDASGAR---LNASDACLPLSTERSLV 240
Score = 102 (41.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
+TQ + IP IIG GG I IR SG++I + E + +E V I GT Q+A
Sbjct: 391 LTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMA 450
Query: 403 QQLIQEYMNNHKESI 417
++ + + K I
Sbjct: 451 LYMLYSRLESEKHRI 465
>UNIPROTKB|Q96I24 [details] [associations]
symbol:FUBP3 "Far upstream element-binding protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:U69127 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 EMBL:CH471090
GO:GO:0006351 GO:GO:0003723 EMBL:AL359092 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 EMBL:AK295155
EMBL:AL353695 EMBL:BC001325 EMBL:BC007874 EMBL:BC137338
EMBL:BC137340 IPI:IPI00063245 IPI:IPI00377261 RefSeq:NP_003925.1
UniGene:Hs.673029 UniGene:Hs.98751 ProteinModelPortal:Q96I24
SMR:Q96I24 DIP:DIP-50124N IntAct:Q96I24 STRING:Q96I24
PhosphoSite:Q96I24 DMDM:37078499 REPRODUCTION-2DPAGE:IPI00377261
PaxDb:Q96I24 PRIDE:Q96I24 DNASU:8939 Ensembl:ENST00000319725
Ensembl:ENST00000372376 GeneID:8939 KEGG:hsa:8939 UCSC:uc004bzr.1
UCSC:uc010mzd.1 CTD:8939 GeneCards:GC09P133454 HGNC:HGNC:4005
HPA:HPA047658 MIM:603536 neXtProt:NX_Q96I24 PharmGKB:PA28421
InParanoid:Q96I24 OMA:AAPHQNT OrthoDB:EOG4X97H1 PhylomeDB:Q96I24
GenomeRNAi:8939 NextBio:33614 ArrayExpress:Q96I24 Bgee:Q96I24
CleanEx:HS_FUBP3 Genevestigator:Q96I24 GermOnline:ENSG00000107164
Uniprot:Q96I24
Length = 572
Score = 115 (45.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 34/128 (26%), Positives = 63/128 (49%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAPVSP 139
+++P KVG +IGR GE IK+ E T + + + DGP+ + D+ + I+G V
Sbjct: 167 ILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDA---FKVQQ 223
Query: 140 AMDAAVRVFKRVSGLP----ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
A + + + + D +++ G S+ + VP +IG+ G +IK IQ
Sbjct: 224 AREMVLEIIREKDQADFRGVRGDFNSRMGGG---SIEVSVPRFAVGIVIGRNGEMIKKIQ 280
Query: 196 ENSGASVR 203
++G ++
Sbjct: 281 NDAGVRIQ 288
Score = 114 (45.2 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 36/137 (26%), Positives = 68/137 (49%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRL 140
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P ND+D+ ++ +L+P+++ +IG+ G IK +QE +G
Sbjct: 141 LGQIVDRCRNGPGFHNDIDSNST-----IQEILIPASKVGLVIGRGGETIKQLQERTG-- 193
Query: 202 VRVLSADEAPFYVTEDE 218
V+++ + P D+
Sbjct: 194 VKMVMIQDGPLPTGADK 210
Score = 100 (40.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 331 ALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDE 387
++G G V +IT T +P +IG GG +I++I + SGA + +Q + P+
Sbjct: 347 SVGAPGG--VQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNL 402
Query: 388 ITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
I+G Q+++A+QLI E + ++GQ P+ P
Sbjct: 403 RRFTIRGVPQQIEVARQLIDEKVGGTNLGAPGAFGQSPFSQPPAPP 448
Score = 60 (26.2 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
+IG G I+ I+ +G I + G+ E ++ G + Q A +I E + +E
Sbjct: 268 VIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIISELILTAQE 326
>UNIPROTKB|G3V829 [details] [associations]
symbol:Fubp3 "RCG45587" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:CH474001
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:AC108321 Ensembl:ENSRNOT00000021871 Uniprot:G3V829
Length = 569
Score = 120 (47.3 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 35/128 (27%), Positives = 66/128 (51%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAPVSP 139
+++P KVG +IG+ GE IK+ E T + + + DGP+ + D+ + I+G +P V
Sbjct: 167 LLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG--DP-FKVQQ 223
Query: 140 AMDAAVRVFKRVSGLP----ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
A + + + + +D ++A G S+ + VP +IG+ G +IK IQ
Sbjct: 224 AREMVLEIIREKDQADFRGVRSDFTSRAGGG---SIEVSVPRFVVGIVIGRNGEMIKKIQ 280
Query: 196 ENSGASVR 203
++G ++
Sbjct: 281 NDAGVRIQ 288
Score = 118 (46.6 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 38/137 (27%), Positives = 67/137 (48%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRL 140
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P ND+D ++ LL+P+++ +IGK G IK +QE +G
Sbjct: 141 LGQIVDRCRNGPGFHNDIDGNST-----IQELLIPASKVGLVIGKGGETIKQLQERTG-- 193
Query: 202 VRVLSADEAPFYVTEDE 218
V+++ + P D+
Sbjct: 194 VKMVMIQDGPLPTGADK 210
Score = 94 (38.1 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 331 ALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDE 387
++G G + +IT T +P +IG GG +I++I + SGA + +Q + P+
Sbjct: 347 SVGTPGG--IQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNL 402
Query: 388 ITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
I+G Q+++A+ LI E + +++GQ P+ P
Sbjct: 403 RIFTIRGAPQQIEVARHLIDEKVGGASLGAPTAFGQSPFSQPPAAP 448
Score = 66 (28.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 21/89 (23%), Positives = 38/89 (42%)
Query: 327 IRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPD 386
+RS RA G + + +P +IG G I+ I+ +G I + G+
Sbjct: 243 VRSDFTSRAGGGSIE-----VSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP 297
Query: 387 EITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
E ++ G + Q A ++I E + +E
Sbjct: 298 ERAAQVMGPPDRCQHAARIINELILTAQE 326
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 119 (46.9 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 35/128 (27%), Positives = 64/128 (50%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAPVSP 139
+++P KVG +IG+ GE IK+ E T + + + DGP+ + D+ + I+G +P V
Sbjct: 167 ILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG--DP-FKVQQ 223
Query: 140 AMDAAVRVFKRVSGLP----ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
A + + + + D A+ G S+ + VP +IG+ G +IK IQ
Sbjct: 224 AREMVLEIIREKDQADFRGVRGDFSARVGGG---SIEVSVPRFAVGIVIGRNGEMIKKIQ 280
Query: 196 ENSGASVR 203
++G ++
Sbjct: 281 NDAGVRIQ 288
Score = 116 (45.9 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 37/137 (27%), Positives = 67/137 (48%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRL 140
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P ND+D ++ +L+P+++ +IGK G IK +QE +G
Sbjct: 141 LGQIVDRCRNGPGFHNDIDGNST-----IQEILIPASKVGLVIGKGGETIKQLQERTG-- 193
Query: 202 VRVLSADEAPFYVTEDE 218
V+++ + P D+
Sbjct: 194 VKMVMIQDGPLPTGADK 210
Score = 93 (37.8 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 29/106 (27%), Positives = 51/106 (48%)
Query: 331 ALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDE 387
++G G V +IT T +P +IG GG +I++I + SGA + +Q + P+
Sbjct: 347 SVGAPGG--VQEITYT--VPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNL 402
Query: 388 ITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
I+G Q+++A+ LI E + ++GQ P+ P
Sbjct: 403 RIFTIRGIPQQIEVARHLIDEKVGGTSLGAPGAFGQSPFSQPPAAP 448
Score = 59 (25.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
+IG G I+ I+ +G I + G+ E ++ G + Q A +I E + +E
Sbjct: 268 VIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVINELILTAQE 326
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 119 (46.9 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 35/128 (27%), Positives = 65/128 (50%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAPVSP 139
+++P KVG +IG+ GE IK+ E T + + + DGP+ + D+ + I+G +P V
Sbjct: 167 LLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG--DP-FKVQQ 223
Query: 140 AMDAAVRVFKRVSGLP----ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
A + + + + +D ++A G S+ + VP +IG+ G +IK IQ
Sbjct: 224 AREMVLEIIREKDQADFRGVRSDFTSRAGGG---SIEVSVPRFVVGIVIGRNGEMIKKIQ 280
Query: 196 ENSGASVR 203
+G ++
Sbjct: 281 NGTGVRIQ 288
Score = 118 (46.6 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 38/137 (27%), Positives = 67/137 (48%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRL 140
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P ND+D ++ LL+P+++ +IGK G IK +QE +G
Sbjct: 141 LGQIVDRCRNGPGFHNDIDGNST-----IQELLIPASKVGLVIGKGGETIKQLQERTG-- 193
Query: 202 VRVLSADEAPFYVTEDE 218
V+++ + P D+
Sbjct: 194 VKMVMIQDGPLPTGADK 210
Score = 94 (38.1 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 331 ALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDE 387
++G G + +IT T +P +IG GG +I++I + SGA + +Q + P+
Sbjct: 347 SVGTPGG--IQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNL 402
Query: 388 ITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
I+G Q+++A+ LI E + +++GQ P+ P
Sbjct: 403 RIFTIRGAPQQIEVARHLIDEKVGGASLGAPTAFGQSPFSQPPAAP 448
Score = 65 (27.9 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 21/89 (23%), Positives = 38/89 (42%)
Query: 327 IRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPD 386
+RS RA G + + +P +IG G I+ I+ +G I + G+
Sbjct: 243 VRSDFTSRAGGGSIE-----VSVPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKPDDGISP 297
Query: 387 EITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
E ++ G + Q A ++I E + +E
Sbjct: 298 ERAAQVMGPPDRCQHAARIINELILTAQE 326
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 119 (46.9 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 35/128 (27%), Positives = 64/128 (50%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAPVSP 139
+++P KVG +IG+ GE IK+ E T + + + DGP+ + D+ + I+G +P V
Sbjct: 167 ILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG--DP-FKVQQ 223
Query: 140 AMDAAVRVFKRVSGLP----ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
A + + + + D A+ G S+ + VP +IG+ G +IK IQ
Sbjct: 224 AREMVLEIIREKDQADFRGVRGDFSARVGGG---SIEVSVPRFAVGIVIGRNGEMIKKIQ 280
Query: 196 ENSGASVR 203
++G ++
Sbjct: 281 NDAGVRIQ 288
Score = 116 (45.9 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 37/137 (27%), Positives = 67/137 (48%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRL 140
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P ND+D ++ +L+P+++ +IGK G IK +QE +G
Sbjct: 141 LGQIVDRCRNGPGFHNDIDGNST-----IQEILIPASKVGLVIGKGGETIKQLQERTG-- 193
Query: 202 VRVLSADEAPFYVTEDE 218
V+++ + P D+
Sbjct: 194 VKMVMIQDGPLPTGADK 210
Score = 93 (37.8 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 29/106 (27%), Positives = 51/106 (48%)
Query: 331 ALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDE 387
++G G V +IT T +P +IG GG +I++I + SGA + +Q + P+
Sbjct: 347 SVGAPGG--VQEITYT--VPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNL 402
Query: 388 ITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
I+G Q+++A+ LI E + ++GQ P+ P
Sbjct: 403 RIFTIRGIPQQIEVARHLIDEKVGGTSLGAPGAFGQSPFSQPPAAP 448
Score = 59 (25.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
+IG G I+ I+ +G I + G+ E ++ G + Q A +I E + +E
Sbjct: 268 VIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVINELILTAQE 326
>UNIPROTKB|F1NYJ3 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00819889
Ensembl:ENSGALT00000006277 ArrayExpress:F1NYJ3 Uniprot:F1NYJ3
Length = 508
Score = 118 (46.6 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 35/128 (27%), Positives = 63/128 (49%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAPVSP 139
+++P KVG +IG+ GE IK+ E T + I + DGP+ + D+ + I+G V
Sbjct: 156 ILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRITGDA---FKVQQ 212
Query: 140 AMDAAVRVFKRVSGLP----ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
A + + + + ND ++ G S+ + VP +IG+ G +IK IQ
Sbjct: 213 AREMVLEIIREKDQADFRGVRNDFSSRMGGG---SIEVSVPRFAVGIVIGRNGEMIKKIQ 269
Query: 196 ENSGASVR 203
++G ++
Sbjct: 270 NDAGVRIQ 277
Score = 116 (45.9 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 38/137 (27%), Positives = 67/137 (48%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 73 VPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGT--PES-IEQAKRL 129
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P NDVD ++ +L+P+++ +IGK G IK +QE +G
Sbjct: 130 LGQIVDRCRNGPGFHNDVDGNST-----IQEILIPASKVGLVIGKGGETIKQLQERTG-- 182
Query: 202 VRVLSADEAPFYVTEDE 218
V+++ + P D+
Sbjct: 183 VKMIMIQDGPMPTGADK 199
Score = 93 (37.8 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 32/119 (26%), Positives = 52/119 (43%)
Query: 323 ALSTIRSSALGRASGPIVT-----QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIIT 377
+L+ R GR + T +IT T +P +IG GG +I++I + SGA +
Sbjct: 321 SLAVARGRGRGRGDWSVGTPGGMQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVE 378
Query: 378 VQES---RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
+Q + P I+G Q++LA+ LI E + +GQ P+ P
Sbjct: 379 LQRNPPPNTDPGVRIFTIRGVPQQIELARHLIDEKVGGTSMGGPGGFGQSPFNQAPTTP 437
Score = 60 (26.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
+IG G I+ I+ +G I + G+ E ++ G + Q A +I E + +E
Sbjct: 257 VIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVAQVMGLPDRCQHAAHIISELILTAQE 315
>UNIPROTKB|Q96AE4 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003700 GO:GO:0003723
GO:GO:0006366 GO:GO:0003697 GO:GO:0010628 EMBL:U05040 EMBL:AC096948
EMBL:BC017247 IPI:IPI00375441 IPI:IPI00853059 PIR:A53184
RefSeq:NP_003893.2 UniGene:Hs.567380 PDB:1J4W PDB:2KXH PDBsum:1J4W
PDBsum:2KXH ProteinModelPortal:Q96AE4 SMR:Q96AE4 DIP:DIP-47273N
IntAct:Q96AE4 MINT:MINT-1374324 STRING:Q96AE4 PhosphoSite:Q96AE4
DMDM:116241370 REPRODUCTION-2DPAGE:IPI00375441 PaxDb:Q96AE4
PRIDE:Q96AE4 DNASU:8880 Ensembl:ENST00000294623
Ensembl:ENST00000370768 GeneID:8880 KEGG:hsa:8880 UCSC:uc001dii.3
CTD:8880 GeneCards:GC01M078400 HGNC:HGNC:4004 HPA:HPA006149
MIM:603444 neXtProt:NX_Q96AE4 PharmGKB:PA28420 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
ChiTaRS:FUBP1 EvolutionaryTrace:Q96AE4 GenomeRNAi:8880
NextBio:33343 ArrayExpress:Q96AE4 Bgee:Q96AE4 CleanEx:HS_FUBP1
Genevestigator:Q96AE4 GermOnline:ENSG00000162613 InterPro:IPR015096
Pfam:PF09005 Uniprot:Q96AE4
Length = 644
Score = 127 (49.8 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 43/155 (27%), Positives = 79/155 (50%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
+IK IQ ++G ++ D+ T ERI ++
Sbjct: 296 EMIKKIQNDAGVRIQ-FKPDDG----TTPERIAQI 325
Score = 118 (46.6 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 34/128 (26%), Positives = 60/128 (46%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAP 211
++ + P
Sbjct: 219 MVMIQDGP 226
Score = 86 (35.3 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQL 405
+P IIG GG +I++I + SGA I +Q + P+ I+GT Q+ A+QL
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 406 IQE 408
I+E
Sbjct: 443 IEE 445
Score = 57 (25.1 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 347 MQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQ 404
+ +PI +A I IG G I+ I+ +G I + G E +I G + Q A +
Sbjct: 278 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAE 337
Query: 405 LIQEYMNN 412
+I + + +
Sbjct: 338 IITDLLRS 345
>UNIPROTKB|E9PEB5 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 InterPro:IPR015096
Pfam:PF09005 IPI:IPI00644386 ProteinModelPortal:E9PEB5 SMR:E9PEB5
PRIDE:E9PEB5 Ensembl:ENST00000370767 ArrayExpress:E9PEB5
Bgee:E9PEB5 Uniprot:E9PEB5
Length = 655
Score = 127 (49.8 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 43/155 (27%), Positives = 79/155 (50%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
+IK IQ ++G ++ D+ T ERI ++
Sbjct: 296 EMIKKIQNDAGVRIQ-FKPDDG----TTPERIAQI 325
Score = 118 (46.6 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 34/128 (26%), Positives = 60/128 (46%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAP 211
++ + P
Sbjct: 219 MVMIQDGP 226
Score = 86 (35.3 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQL 405
+P IIG GG +I++I + SGA I +Q + P+ I+GT Q+ A+QL
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 406 IQE 408
I+E
Sbjct: 443 IEE 445
Score = 57 (25.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 347 MQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQ 404
+ +PI +A I IG G I+ I+ +G I + G E +I G + Q A +
Sbjct: 278 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAE 337
Query: 405 LIQEYMNN 412
+I + + +
Sbjct: 338 IITDLLRS 345
>MGI|MGI:1196294 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1196294 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625
InterPro:IPR015096 Pfam:PF09005 EMBL:BC014763 EMBL:AK029458
IPI:IPI00467635 IPI:IPI00874931 UniGene:Mm.278922 PDB:1X4M PDB:1X4N
PDBsum:1X4M PDBsum:1X4N ProteinModelPortal:Q91WJ8 SMR:Q91WJ8
IntAct:Q91WJ8 STRING:Q91WJ8 PhosphoSite:Q91WJ8
REPRODUCTION-2DPAGE:Q91WJ8 PaxDb:Q91WJ8 PRIDE:Q91WJ8
UCSC:uc008rsv.1 InParanoid:Q91WJ8 EvolutionaryTrace:Q91WJ8
CleanEx:MM_FUBP1 Genevestigator:Q91WJ8
GermOnline:ENSMUSG00000028034 Uniprot:Q91WJ8
Length = 651
Score = 124 (48.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 38/135 (28%), Positives = 71/135 (52%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 179 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 235
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 236 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 291
Query: 189 SLIKSIQENSGASVR 203
+IK IQ ++G ++
Sbjct: 292 EMIKKIQNDAGVRIQ 306
Score = 118 (46.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 34/128 (26%), Positives = 60/128 (46%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 103 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 162
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 163 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 214
Query: 204 VLSADEAP 211
++ + P
Sbjct: 215 MVMIQDGP 222
Score = 89 (36.4 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQL 405
+P IIG GG +I++I + SGA I +Q S P+ I+GT Q+ A+QL
Sbjct: 379 VPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQL 438
Query: 406 IQE 408
I+E
Sbjct: 439 IEE 441
Score = 57 (25.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 347 MQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIKGTSSQVQLAQ 403
+ +PI +A I IG G I+ I+ +G I + G PD I +I G + Q A
Sbjct: 274 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIA-QITGPPDRCQHAA 332
Query: 404 QLIQEYMNN 412
++I + + +
Sbjct: 333 EIITDLLRS 341
>UNIPROTKB|B4DT31 [details] [associations]
symbol:FUBP1 "cDNA FLJ53425, highly similar to Far upstream
element-binding protein 1" species:9606 "Homo sapiens" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 EMBL:AC096948 UniGene:Hs.567380
HGNC:HGNC:4004 HOGENOM:HOG000231552 HOVERGEN:HBG000625
ChiTaRS:FUBP1 InterPro:IPR015096 Pfam:PF09005 EMBL:AK300032
IPI:IPI00641948 SMR:B4DT31 STRING:B4DT31 Ensembl:ENST00000436586
UCSC:uc010orm.2 OMA:NGQEGDQ Uniprot:B4DT31
Length = 665
Score = 127 (49.8 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 43/155 (27%), Positives = 79/155 (50%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 204 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 260
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 261 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 316
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
+IK IQ ++G ++ D+ T ERI ++
Sbjct: 317 EMIKKIQNDAGVRIQ-FKPDDG----TTPERIAQI 346
Score = 118 (46.6 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 34/128 (26%), Positives = 60/128 (46%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 128 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 187
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 188 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 239
Query: 204 VLSADEAP 211
++ + P
Sbjct: 240 MVMIQDGP 247
Score = 86 (35.3 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQL 405
+P IIG GG +I++I + SGA I +Q + P+ I+GT Q+ A+QL
Sbjct: 404 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 463
Query: 406 IQE 408
I+E
Sbjct: 464 IEE 466
Score = 57 (25.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 347 MQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQ 404
+ +PI +A I IG G I+ I+ +G I + G E +I G + Q A +
Sbjct: 299 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAE 358
Query: 405 LIQEYMNN 412
+I + + +
Sbjct: 359 IITDLLRS 366
>UNIPROTKB|F1NGC0 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00578263
Ensembl:ENSGALT00000039554 ArrayExpress:F1NGC0 Uniprot:F1NGC0
Length = 539
Score = 118 (46.6 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 35/128 (27%), Positives = 63/128 (49%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAPVSP 139
+++P KVG +IG+ GE IK+ E T + I + DGP+ + D+ + I+G V
Sbjct: 185 ILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRITGDA---FKVQQ 241
Query: 140 AMDAAVRVFKRVSGLP----ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
A + + + + ND ++ G S+ + VP +IG+ G +IK IQ
Sbjct: 242 AREMVLEIIREKDQADFRGVRNDFSSRMGGG---SIEVSVPRFAVGIVIGRNGEMIKKIQ 298
Query: 196 ENSGASVR 203
++G ++
Sbjct: 299 NDAGVRIQ 306
Score = 116 (45.9 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 38/137 (27%), Positives = 67/137 (48%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 102 VPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGT--PES-IEQAKRL 158
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P NDVD ++ +L+P+++ +IGK G IK +QE +G
Sbjct: 159 LGQIVDRCRNGPGFHNDVDGNST-----IQEILIPASKVGLVIGKGGETIKQLQERTG-- 211
Query: 202 VRVLSADEAPFYVTEDE 218
V+++ + P D+
Sbjct: 212 VKMIMIQDGPMPTGADK 228
Score = 93 (37.8 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 32/119 (26%), Positives = 52/119 (43%)
Query: 323 ALSTIRSSALGRASGPIVT-----QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIIT 377
+L+ R GR + T +IT T +P +IG GG +I++I + SGA +
Sbjct: 350 SLAVARGRGRGRGDWSVGTPGGMQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVE 407
Query: 378 VQES---RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
+Q + P I+G Q++LA+ LI E + +GQ P+ P
Sbjct: 408 LQRNPPPNTDPGVRIFTIRGVPQQIELARHLIDEKVGGTSMGGPGGFGQSPFNQAPTTP 466
Score = 60 (26.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
+IG G I+ I+ +G I + G+ E ++ G + Q A +I E + +E
Sbjct: 286 VIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVAQVMGLPDRCQHAAHIISELILTAQE 344
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 119 (46.9 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 39/137 (28%), Positives = 67/137 (48%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRL 140
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P NDVD ++ LL+P+++ +IGK G IK +QE +G
Sbjct: 141 LGQIVDRCRNGPGFHNDVDGSST-----IQELLIPASKVGLVIGKGGETIKQLQERTG-- 193
Query: 202 VRVLSADEAPFYVTEDE 218
V+++ + P D+
Sbjct: 194 VKMVMIQDGPLPTGADK 210
Score = 116 (45.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 34/128 (26%), Positives = 64/128 (50%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAPVSP 139
+++P KVG +IG+ GE IK+ E T + + + DGP+ + D+ + I+G +P V
Sbjct: 167 LLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG--DP-FKVQQ 223
Query: 140 AMDAAVRVFKRVSGLP----ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
A + + + + D ++ G S+ + VP +IG+ G +IK IQ
Sbjct: 224 AREMVLEIIREKDQADFRGVRGDFSSRMGGG---SIEVSVPRFAVGIVIGRNGEMIKKIQ 280
Query: 196 ENSGASVR 203
++G ++
Sbjct: 281 NDAGVRIQ 288
Score = 91 (37.1 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 28/106 (26%), Positives = 50/106 (47%)
Query: 331 ALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDE 387
++G G + +IT T +P +IG GG +I++I + SGA + +Q + P
Sbjct: 347 SVGTPGG--IQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGL 402
Query: 388 ITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
I+G Q+++A+ LI E + ++GQ P+ P
Sbjct: 403 RVFTIRGVPQQIEVARHLIDEKVGGSGLGAPGAFGQSPFSQPPAAP 448
Score = 59 (25.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
+IG G I+ I+ +G I + G+ E ++ G + Q A +I E + +E
Sbjct: 268 VIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVISELILTAQE 326
>UNIPROTKB|D4A8D6 [details] [associations]
symbol:D4A8D6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00559929
Ensembl:ENSRNOT00000045980 Uniprot:D4A8D6
Length = 330
Score = 144 (55.7 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 39/125 (31%), Positives = 69/125 (55%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSI+G+KGE +K CE+ I +L+ + +RI+ +G+ +
Sbjct: 17 RLLMHGKEVGSIMGKKGESARKLCEECGTLINILEE--NCLERIITFAGQR------NAI 68
Query: 141 MDAAVRVFKRVSG-LPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + ++ G L + ++ A+ ++ L+VP Q +LIGK G IK I+EN+G
Sbjct: 69 FKAFAMIIDKLEGDLSSSIANSTAASRPSVNLCLVVPDCQCGSLIGKGGCKIKEIRENTG 128
Query: 200 ASVRV 204
A V+V
Sbjct: 129 AQVQV 133
Score = 55 (24.4 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 345 QTMQIPISYAEDIIGV----GGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
QT ++ D+IG G I + + GA I + + V I G+++ +
Sbjct: 251 QTTSHELTVPNDLIGCIIRHQGAEINEVCQACGAQIKIANPMEGSTDWQVTITGSTASIS 310
Query: 401 LAQQLIQEYMNNHKESITSS 420
LAQ LI +++ + +S
Sbjct: 311 LAQYLISVRLSSETGGMGNS 330
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 110 (43.8 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 37/130 (28%), Positives = 66/130 (50%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAP 136
V +++P KVG +IG+ G+ IK+ E T + I + D P+ + D+ + ISG +P
Sbjct: 170 VQEILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMPTGSDKPLRISG--DPYK- 226
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKAS--GAAF-CSVRLLVPSTQAINLIGKQGSLIKS 193
V A + V + + + D + S G+ S+ + VP +IG+ G +IK
Sbjct: 227 VQQARELVVEIIREKD---QGDFRSGRSDFGSRLGSSIDVAVPRFAVGIVIGRNGEMIKK 283
Query: 194 IQENSGASVR 203
IQ ++G ++
Sbjct: 284 IQNDAGVRIQ 293
Score = 104 (41.7 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 35/128 (27%), Positives = 58/128 (45%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ DR ++G PE+ + A
Sbjct: 90 VPDKMVGFIIGRGGEQITRIQLESNCKIQIAADSGGMMDRPCTLTGT--PES-IEQAKRL 146
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
++ R P S A +L+P+++ +IGK G IK +QE +G +
Sbjct: 147 LGQIVDRCRNGPGFHSQMDGSSAV---QEILIPASKVGLVIGKGGDTIKQLQERTGVKMI 203
Query: 204 VLSADEAP 211
++ D P
Sbjct: 204 MIQDDPMP 211
Score = 100 (40.3 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 31/105 (29%), Positives = 53/105 (50%)
Query: 332 LGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEI 388
+G G + ++T T IP +IG GG +I+NI + SGA + +Q + P+
Sbjct: 353 IGTPGG--LQEVTYT--IPADKCGLVIGKGGETIKNINQQSGAHVELQRNPPPNTDPNVR 408
Query: 389 TVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
T I+G+ Q+++A+QLI + + SS+G P+ P
Sbjct: 409 TFSIRGSPQQMEMARQLIDDKIGASGMGGNSSFGLSPFTQGPATP 453
Score = 62 (26.9 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
+IG G I+ I+ +G I + G+ PD + ++ G + Q A LI E + +E
Sbjct: 273 VIGRNGEMIKKIQNDAGVRIQFKPDDGISPDRVA-QVMGQPERCQHAVHLINELVQTAQE 331
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 146 (56.5 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 48/179 (26%), Positives = 87/179 (48%)
Query: 52 SALPQSTGPDAAAVPEEKKWPG--WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRA 109
S + ++ G ++ V +E+ W G W G ++++P GSIIG+ G+ I + ++T A
Sbjct: 30 SLVAEALGAESF-VCDERGWGGRGWEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGA 88
Query: 110 RIKVLDGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKAS 164
IK+ P +R+ L+ G E + VR + PE N + + +
Sbjct: 89 TIKLSKSKDFYPGTTERVCLVQGTAEALNAAHSFIAEKVREIPQAMTKPEVVNILQPQTT 148
Query: 165 --GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+L+VP++ A +IGK G+ +K++ E SGA V++ + P + ER+V
Sbjct: 149 MNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVV 204
Score = 60 (26.2 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITV-QESRGLPDEIT--VEIKGTSSQVQLAQQL 405
+P + I+G GG ++ + +GA I + ++ LP V I G+ + Q AQ L
Sbjct: 437 VPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYL 496
Query: 406 IQEYMNNHKESITSSYGQ 423
I + + +++ + +S Q
Sbjct: 497 ISQRVT-YEQGVRASNPQ 513
>UNIPROTKB|J9P014 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AAEX03004886
Ensembl:ENSCAFT00000046408 Uniprot:J9P014
Length = 644
Score = 124 (48.7 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 38/135 (28%), Positives = 71/135 (52%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVR 203
+IK IQ ++G ++
Sbjct: 296 EMIKKIQNDAGVRIQ 310
Score = 118 (46.6 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 34/128 (26%), Positives = 60/128 (46%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAP 211
++ + P
Sbjct: 219 MVMIQDGP 226
Score = 86 (35.3 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQL 405
+P IIG GG +I++I + SGA I +Q + P+ I+GT Q+ A+QL
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 406 IQE 408
I+E
Sbjct: 443 IEE 445
Score = 57 (25.1 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 347 MQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIKGTSSQVQLAQ 403
+ +PI +A I IG G I+ I+ +G I + G PD I +I G + Q A
Sbjct: 278 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIA-QITGPPDRCQHAA 336
Query: 404 QLIQEYMNN 412
++I + + +
Sbjct: 337 EIITDLLRS 345
>UNIPROTKB|F1S9S5 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:CU695021
Ensembl:ENSSSCT00000004173 Uniprot:F1S9S5
Length = 645
Score = 124 (48.7 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 38/135 (28%), Positives = 71/135 (52%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVR 203
+IK IQ ++G ++
Sbjct: 296 EMIKKIQNDAGVRIQ 310
Score = 118 (46.6 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 34/128 (26%), Positives = 60/128 (46%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAP 211
++ + P
Sbjct: 219 MVMIQDGP 226
Score = 86 (35.3 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQL 405
+P IIG GG +I++I + SGA I +Q + P+ I+GT Q+ A+QL
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 406 IQE 408
I+E
Sbjct: 443 IEE 445
Score = 57 (25.1 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 347 MQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIKGTSSQVQLAQ 403
+ +PI +A I IG G I+ I+ +G I + G PD I +I G + Q A
Sbjct: 278 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIA-QITGPPDRCQHAA 336
Query: 404 QLIQEYMNN 412
++I + + +
Sbjct: 337 EIITDLLRS 345
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 124 (48.7 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 38/135 (28%), Positives = 71/135 (52%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 182 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 238
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 239 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 294
Query: 189 SLIKSIQENSGASVR 203
+IK IQ ++G ++
Sbjct: 295 EMIKKIQNDAGVRIQ 309
Score = 112 (44.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 35/130 (26%), Positives = 61/130 (46%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS--PDRIVLISGKEEPEAPVSPAM 141
VP VG IIGR GE I + +++ +I++ S P+R +++G E +
Sbjct: 104 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPALDSGGLPERSCMLTGTPESVQSAKRLL 163
Query: 142 DAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
D V + G D G +++P+++A +IGK G IK +QE +G
Sbjct: 164 DQIVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG-- 215
Query: 202 VRVLSADEAP 211
V+++ + P
Sbjct: 216 VKMVMIQDGP 225
Score = 86 (35.3 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQL 405
+P IIG GG +I++I + SGA I +Q + P+ I+GT Q+ A+QL
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQL 442
Query: 406 IQE 408
I+E
Sbjct: 443 IEE 445
Score = 57 (25.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 347 MQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIKGTSSQVQLAQ 403
+ +PI +A I IG G I+ I+ +G I + G PD I +I G + Q A
Sbjct: 277 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIA-QITGPPDRCQHAA 335
Query: 404 QLIQEYMNN 412
++I + + +
Sbjct: 336 EIITDLLRS 344
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 149 (57.5 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 42/131 (32%), Positives = 76/131 (58%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+ GE +KK +++ ARI + +G + P+RI+ ++G P +
Sbjct: 7 RLLMHGKEVGSIIGKDGESVKKMRKESGARISISEG--NCPERIITLAG------PTNFK 58
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A + + K + + ++ A+ +V L+VP++Q +LIGK G IK I+E++G
Sbjct: 59 SFAMI-IDKLEEDISSSMTNSTAASRPRVTVWLVVPASQCGSLIGKGGCKIKEIRESTGV 117
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 118 QVQV-AGDMLP 127
>UNIPROTKB|E2RJQ2 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AAEX03004886
Ensembl:ENSCAFT00000032426 Uniprot:E2RJQ2
Length = 668
Score = 124 (48.7 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 38/135 (28%), Positives = 71/135 (52%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 206 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 262
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 263 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 318
Query: 189 SLIKSIQENSGASVR 203
+IK IQ ++G ++
Sbjct: 319 EMIKKIQNDAGVRIQ 333
Score = 118 (46.6 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 34/128 (26%), Positives = 60/128 (46%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 130 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 189
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 190 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 241
Query: 204 VLSADEAP 211
++ + P
Sbjct: 242 MVMIQDGP 249
Score = 86 (35.3 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQL 405
+P IIG GG +I++I + SGA I +Q + P+ I+GT Q+ A+QL
Sbjct: 406 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 465
Query: 406 IQE 408
I+E
Sbjct: 466 IEE 468
Score = 57 (25.1 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 347 MQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIKGTSSQVQLAQ 403
+ +PI +A I IG G I+ I+ +G I + G PD I +I G + Q A
Sbjct: 301 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIA-QITGPPDRCQHAA 359
Query: 404 QLIQEYMNN 412
++I + + +
Sbjct: 360 EIITDLLRS 368
>UNIPROTKB|F1S9S9 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:CU695021
Ensembl:ENSSSCT00000004169 Uniprot:F1S9S9
Length = 708
Score = 124 (48.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 38/135 (28%), Positives = 71/135 (52%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 223 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 279
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 280 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 335
Query: 189 SLIKSIQENSGASVR 203
+IK IQ ++G ++
Sbjct: 336 EMIKKIQNDAGVRIQ 350
Score = 118 (46.6 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 34/128 (26%), Positives = 60/128 (46%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 147 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 206
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 207 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 258
Query: 204 VLSADEAP 211
++ + P
Sbjct: 259 MVMIQDGP 266
Score = 86 (35.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQL 405
+P IIG GG +I++I + SGA I +Q + P+ I+GT Q+ A+QL
Sbjct: 423 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 482
Query: 406 IQE 408
I+E
Sbjct: 483 IEE 485
Score = 57 (25.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 347 MQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIKGTSSQVQLAQ 403
+ +PI +A I IG G I+ I+ +G I + G PD I +I G + Q A
Sbjct: 318 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIA-QITGPPDRCQHAA 376
Query: 404 QLIQEYMNN 412
++I + + +
Sbjct: 377 EIITDLLRS 385
>UNIPROTKB|F6Y140 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
OMA:QASGNCH GeneTree:ENSGT00650000093048 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029641 Uniprot:F6Y140
Length = 602
Score = 129 (50.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 40/139 (28%), Positives = 66/139 (47%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 7 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 66
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 67 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 123
Query: 203 RVLSADEAPFYVTEDERIV 221
++ V + RI+
Sbjct: 124 ILIQDGSQNTNVDKPLRII 142
Score = 89 (36.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 36/137 (26%), Positives = 67/137 (48%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSP-DRIVLISGKEEPE 134
V +++P K G +IG+ GE IK+ E RA +K++ DG ++ D+ + I G +P
Sbjct: 91 VQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTNVDKPLRIIG--DPY 146
Query: 135 APVSPAMDAAVRVFKR--VSGLPE-NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
V A + + + + G + N+ ++ G + + VP +IG+ G +I
Sbjct: 147 K-VQQACEMVMDILRERDQGGFGDRNEYGSRIGGG----IDVPVPRHSVGVVIGRSGEMI 201
Query: 192 KSIQENSGASVRVLSAD 208
K IQ ++G ++ D
Sbjct: 202 KKIQNDAGVRIQFKQDD 218
Score = 78 (32.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLA 402
T IP +IG GG +++ I + +GA + + G P+ I+G+ Q+ A
Sbjct: 284 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHA 343
Query: 403 QQLIQE 408
+QLI+E
Sbjct: 344 KQLIEE 349
Score = 53 (23.7 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
+IG G I+ I+ +G I ++ G E I G + + A ++I + + +
Sbjct: 193 VIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 248
>RGD|621828 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621828 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0043025 GO:GO:0030425
GO:GO:0006397 GO:GO:0006351 GO:GO:0003730 GO:GO:0051028
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:AF308818 IPI:IPI00200920 RefSeq:NP_598286.1
UniGene:Rn.92643 ProteinModelPortal:Q99PF5 SMR:Q99PF5
PhosphoSite:Q99PF5 REPRODUCTION-2DPAGE:Q99PF5 PRIDE:Q99PF5
GeneID:171137 KEGG:rno:171137 NextBio:621918 Genevestigator:Q99PF5
Uniprot:Q99PF5
Length = 721
Score = 129 (50.5 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 40/139 (28%), Positives = 66/139 (47%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 211
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 212 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 268
Query: 203 RVLSADEAPFYVTEDERIV 221
++ V + RI+
Sbjct: 269 ILIQDGSQNTNVDKPLRII 287
Score = 90 (36.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 36/137 (26%), Positives = 67/137 (48%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSP-DRIVLISGKEEPE 134
V +++P K G +IG+ GE IK+ E RA +K++ DG ++ D+ + I G +P
Sbjct: 236 VQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTNVDKPLRIIG--DPY 291
Query: 135 APVSPAMDAAVRVFKR--VSGLPE-NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
V A + + + + G + N+ ++ G + + VP +IG+ G +I
Sbjct: 292 K-VQQACEMVMDILRERDQGGFGDRNEYGSRVGGG----IDVPVPRHSVGVVIGRSGEMI 346
Query: 192 KSIQENSGASVRVLSAD 208
K IQ ++G ++ D
Sbjct: 347 KKIQNDAGVRIQFKQDD 363
Score = 79 (32.9 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLA 402
T IP +IG GG +++ I + +GA + + G P+ I+G+ Q+ A
Sbjct: 429 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHA 488
Query: 403 QQLIQE 408
+QLI+E
Sbjct: 489 KQLIEE 494
Score = 53 (23.7 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
+IG G I+ I+ +G I ++ G E I G + + A ++I + + +
Sbjct: 338 VIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 393
>MGI|MGI:1336214 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0030425 "dendrite"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0051028 "mRNA transport" evidence=IEA] Reactome:REACT_78136
Reactome:REACT_88316 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS00178 PROSITE:PS50084 SMART:SM00322
MGI:MGI:1336214 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003723 GO:GO:0051028 GO:GO:0010494 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8570 OMA:QASGNCH EMBL:AK156541
EMBL:CT571247 EMBL:BC064454 EMBL:BC108414 IPI:IPI00462934
RefSeq:NP_034743.3 UniGene:Mm.34296 HSSP:Q91WJ8
ProteinModelPortal:Q3U0V1 SMR:Q3U0V1 IntAct:Q3U0V1 STRING:Q3U0V1
PhosphoSite:Q3U0V1 PaxDb:Q3U0V1 PRIDE:Q3U0V1 DNASU:16549
Ensembl:ENSMUST00000007814 GeneID:16549 KEGG:mmu:16549
UCSC:uc008ddr.2 GeneTree:ENSGT00650000093048 InParanoid:Q3U0V1
OrthoDB:EOG451DQX NextBio:290019 Bgee:Q3U0V1 CleanEx:MM_KHSRP
Genevestigator:Q3U0V1 Uniprot:Q3U0V1
Length = 748
Score = 129 (50.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 40/139 (28%), Positives = 66/139 (47%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 211
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 212 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 268
Query: 203 RVLSADEAPFYVTEDERIV 221
++ V + RI+
Sbjct: 269 ILIQDGSQNTNVDKPLRII 287
Score = 90 (36.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 36/137 (26%), Positives = 67/137 (48%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSP-DRIVLISGKEEPE 134
V +++P K G +IG+ GE IK+ E RA +K++ DG ++ D+ + I G +P
Sbjct: 236 VQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTNVDKPLRIIG--DPY 291
Query: 135 APVSPAMDAAVRVFKR--VSGLPE-NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
V A + + + + G + N+ ++ G + + VP +IG+ G +I
Sbjct: 292 K-VQQACEMVMDILRERDQGGFGDRNEYGSRVGGG----IDVPVPRHSVGVVIGRSGEMI 346
Query: 192 KSIQENSGASVRVLSAD 208
K IQ ++G ++ D
Sbjct: 347 KKIQNDAGVRIQFKQDD 363
Score = 79 (32.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLA 402
T IP +IG GG +++ I + +GA + + G P+ I+G+ Q+ A
Sbjct: 429 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHA 488
Query: 403 QQLIQE 408
+QLI+E
Sbjct: 489 KQLIEE 494
Score = 53 (23.7 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
+IG G I+ I+ +G I ++ G E I G + + A ++I + + +
Sbjct: 338 VIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 393
>UNIPROTKB|F1MHR6 [details] [associations]
symbol:LOC505564 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:DAAA02019565 EMBL:DAAA02019566
IPI:IPI00701919 Ensembl:ENSBTAT00000027991 Uniprot:F1MHR6
Length = 708
Score = 129 (50.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 40/139 (28%), Positives = 66/139 (47%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 112 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 171
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 172 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 228
Query: 203 RVLSADEAPFYVTEDERIV 221
++ V + RI+
Sbjct: 229 ILIQDGSQNTNVDKPLRII 247
Score = 89 (36.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 36/137 (26%), Positives = 67/137 (48%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSP-DRIVLISGKEEPE 134
V +++P K G +IG+ GE IK+ E RA +K++ DG ++ D+ + I G +P
Sbjct: 196 VQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTNVDKPLRIIG--DPY 251
Query: 135 APVSPAMDAAVRVFKR--VSGLPE-NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
V A + + + + G + N+ ++ G + + VP +IG+ G +I
Sbjct: 252 K-VQQACEMVMDILRERDQGGFGDRNEYGSRIGGG----IDVPVPRHSVGVVIGRSGEMI 306
Query: 192 KSIQENSGASVRVLSAD 208
K IQ ++G ++ D
Sbjct: 307 KKIQNDAGVRIQFKQDD 323
Score = 78 (32.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLA 402
T IP +IG GG +++ I + +GA + + G P+ I+G+ Q+ A
Sbjct: 389 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHA 448
Query: 403 QQLIQE 408
+QLI+E
Sbjct: 449 KQLIEE 454
Score = 53 (23.7 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
+IG G I+ I+ +G I ++ G E I G + + A ++I + + +
Sbjct: 298 VIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 353
>UNIPROTKB|Q92945 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005654 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 GO:GO:0051028
GO:GO:0000375 eggNOG:NOG300923 HOGENOM:HOG000231552
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:U94832 EMBL:AC011491 EMBL:AC011539 EMBL:BC085004
EMBL:AF093747 EMBL:AF093745 EMBL:AF093748 EMBL:U69126 EMBL:AB209662
IPI:IPI00479786 IPI:IPI00855957 RefSeq:NP_003676.2
UniGene:Hs.727344 PDB:2HH2 PDB:2HH3 PDB:2JVZ PDB:2OPU PDB:2OPV
PDB:4B8T PDBsum:2HH2 PDBsum:2HH3 PDBsum:2JVZ PDBsum:2OPU
PDBsum:2OPV PDBsum:4B8T ProteinModelPortal:Q92945 SMR:Q92945
DIP:DIP-48484N IntAct:Q92945 STRING:Q92945 PhosphoSite:Q92945
DMDM:160380711 REPRODUCTION-2DPAGE:Q92945 PaxDb:Q92945 PRIDE:Q92945
Ensembl:ENST00000398148 GeneID:8570 KEGG:hsa:8570 UCSC:uc002mer.4
GeneCards:GC19M006413 H-InvDB:HIX0040083 HGNC:HGNC:6316
HPA:HPA034739 MIM:603445 neXtProt:NX_Q92945 PharmGKB:PA30097
InParanoid:Q92945 OMA:QASGNCH PhylomeDB:Q92945 ChEMBL:CHEMBL1795105
ChiTaRS:KHSRP EvolutionaryTrace:Q92945 GenomeRNAi:8570
NextBio:32149 PMAP-CutDB:Q92945 ArrayExpress:Q92945 Bgee:Q92945
CleanEx:HS_KHSRP Genevestigator:Q92945 GermOnline:ENSG00000088247
Uniprot:Q92945
Length = 711
Score = 129 (50.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 40/139 (28%), Positives = 66/139 (47%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 210
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 211 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 267
Query: 203 RVLSADEAPFYVTEDERIV 221
++ V + RI+
Sbjct: 268 ILIQDGSQNTNVDKPLRII 286
Score = 89 (36.4 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 36/137 (26%), Positives = 67/137 (48%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSP-DRIVLISGKEEPE 134
V +++P K G +IG+ GE IK+ E RA +K++ DG ++ D+ + I G +P
Sbjct: 235 VQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTNVDKPLRIIG--DPY 290
Query: 135 APVSPAMDAAVRVFKR--VSGLPE-NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
V A + + + + G + N+ ++ G + + VP +IG+ G +I
Sbjct: 291 K-VQQACEMVMDILRERDQGGFGDRNEYGSRIGGG----IDVPVPRHSVGVVIGRSGEMI 345
Query: 192 KSIQENSGASVRVLSAD 208
K IQ ++G ++ D
Sbjct: 346 KKIQNDAGVRIQFKQDD 362
Score = 78 (32.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLA 402
T IP +IG GG +++ I + +GA + + G P+ I+G+ Q+ A
Sbjct: 428 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHA 487
Query: 403 QQLIQE 408
+QLI+E
Sbjct: 488 KQLIEE 493
Score = 53 (23.7 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
+IG G I+ I+ +G I ++ G E I G + + A ++I + + +
Sbjct: 337 VIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 392
>UNIPROTKB|E2QVT3 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
Ensembl:ENSCAFT00000029641 Uniprot:E2QVT3
Length = 743
Score = 129 (50.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 40/139 (28%), Positives = 66/139 (47%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 148 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 207
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 208 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 264
Query: 203 RVLSADEAPFYVTEDERIV 221
++ V + RI+
Sbjct: 265 ILIQDGSQNTNVDKPLRII 283
Score = 89 (36.4 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 36/137 (26%), Positives = 67/137 (48%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSP-DRIVLISGKEEPE 134
V +++P K G +IG+ GE IK+ E RA +K++ DG ++ D+ + I G +P
Sbjct: 232 VQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTNVDKPLRIIG--DPY 287
Query: 135 APVSPAMDAAVRVFKR--VSGLPE-NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
V A + + + + G + N+ ++ G + + VP +IG+ G +I
Sbjct: 288 K-VQQACEMVMDILRERDQGGFGDRNEYGSRIGGG----IDVPVPRHSVGVVIGRSGEMI 342
Query: 192 KSIQENSGASVRVLSAD 208
K IQ ++G ++ D
Sbjct: 343 KKIQNDAGVRIQFKQDD 359
Score = 78 (32.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLA 402
T IP +IG GG +++ I + +GA + + G P+ I+G+ Q+ A
Sbjct: 425 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHA 484
Query: 403 QQLIQE 408
+QLI+E
Sbjct: 485 KQLIEE 490
Score = 53 (23.7 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
+IG G I+ I+ +G I ++ G E I G + + A ++I + + +
Sbjct: 334 VIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 389
>UNIPROTKB|F1SBT6 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:CU929921
Ensembl:ENSSSCT00000014785 Uniprot:F1SBT6
Length = 747
Score = 129 (50.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 40/139 (28%), Positives = 66/139 (47%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 210
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 211 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 267
Query: 203 RVLSADEAPFYVTEDERIV 221
++ V + RI+
Sbjct: 268 ILIQDGSQNTNVDKPLRII 286
Score = 89 (36.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 36/137 (26%), Positives = 67/137 (48%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSP-DRIVLISGKEEPE 134
V +++P K G +IG+ GE IK+ E RA +K++ DG ++ D+ + I G +P
Sbjct: 235 VQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTNVDKPLRIIG--DPY 290
Query: 135 APVSPAMDAAVRVFKR--VSGLPE-NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
V A + + + + G + N+ ++ G + + VP +IG+ G +I
Sbjct: 291 K-VQQACEMVMDILRERDQGGFGDRNEYGSRIGGG----IDVPVPRHSVGVVIGRSGEMI 345
Query: 192 KSIQENSGASVRVLSAD 208
K IQ ++G ++ D
Sbjct: 346 KKIQNDAGVRIQFKQDD 362
Score = 78 (32.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLA 402
T IP +IG GG +++ I + +GA + + G P+ I+G+ Q+ A
Sbjct: 428 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHA 487
Query: 403 QQLIQE 408
+QLI+E
Sbjct: 488 KQLIEE 493
Score = 53 (23.7 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
+IG G I+ I+ +G I ++ G E I G + + A ++I + + +
Sbjct: 337 VIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 392
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 121 (47.7 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 46/167 (27%), Positives = 75/167 (44%)
Query: 59 GPDAAAVPE-EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP 117
GPD P+ ++++ R IV + G IIG+ G+ + ++T + V
Sbjct: 28 GPDGEPAPKTDEEYA--QAQLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVV 85
Query: 118 VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPS 177
DR++ I+G E +S A R + G P + S ++LL+
Sbjct: 86 QGVHDRVLTITGGCEG---ISKAYAVVARAL--LEGAPSMGMGGVVSNNGTHPIKLLISH 140
Query: 178 TQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
Q +IG+QG IK IQ+ SG VR+++ E ER+VE+Q
Sbjct: 141 NQMGTIIGRQGLKIKHIQDVSG--VRMVAQKE--MLPQSTERVVEVQ 183
Score = 77 (32.2 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVE----IKGTSSQV 399
TQ + IP IIG G+ I IR+TSGA I++ ++ P + T E I G++
Sbjct: 289 TQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAKA---PHDETGERMFTIMGSAKAN 345
Query: 400 QLAQQLIQEYMNNHK 414
+ A L+ E + K
Sbjct: 346 ETALFLLYENLEAEK 360
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 119 (46.9 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 43/161 (26%), Positives = 71/161 (44%)
Query: 60 PDAAAVPEEKKWPGW---PGHCVFRMI------VPVLKVGSIIGRKGELIKKTCEDTRAR 110
PDA VP + G P H R + VP VG IIGR GE I + +++ +
Sbjct: 69 PDAKKVPPQNDSFGAQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCK 128
Query: 111 IKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
I++ P+R +++G E +D V + G D G
Sbjct: 129 IQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGD------GPGNAV 182
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAP 211
+++P+++A +IGK G IK +QE +G V+++ + P
Sbjct: 183 QEIMIPASKAGLVIGKGGETIKQLQERAG--VKMVMIQDGP 221
Score = 86 (35.3 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQL 405
+P IIG GG +I++I + SGA I +Q + P+ I+GT Q+ A+QL
Sbjct: 378 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 437
Query: 406 IQE 408
I+E
Sbjct: 438 IEE 440
Score = 57 (25.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 347 MQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIKGTSSQVQLAQ 403
+ +PI +A I IG G I+ I+ +G I + G PD I +I G + Q A
Sbjct: 273 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIA-QITGPPDRCQHAA 331
Query: 404 QLIQEYMNN 412
++I + + +
Sbjct: 332 EIITDLLRS 340
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 119 (46.9 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 43/161 (26%), Positives = 71/161 (44%)
Query: 60 PDAAAVPEEKKWPGW---PGHCVFRMI------VPVLKVGSIIGRKGELIKKTCEDTRAR 110
PDA VP + G P H R + VP VG IIGR GE I + +++ +
Sbjct: 69 PDAKKVPPQNDSFGAQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCK 128
Query: 111 IKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
I++ P+R +++G E +D V + G D G
Sbjct: 129 IQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGD------GPGNAV 182
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAP 211
+++P+++A +IGK G IK +QE +G V+++ + P
Sbjct: 183 QEIMIPASKAGLVIGKGGETIKQLQERAG--VKMVMIQDGP 221
Score = 86 (35.3 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQL 405
+P IIG GG +I++I + SGA I +Q + P+ I+GT Q+ A+QL
Sbjct: 378 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 437
Query: 406 IQE 408
I+E
Sbjct: 438 IEE 440
Score = 57 (25.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 347 MQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIKGTSSQVQLAQ 403
+ +PI +A I IG G I+ I+ +G I + G PD I +I G + Q A
Sbjct: 273 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIA-QITGPPDRCQHAA 331
Query: 404 QLIQEYMNN 412
++I + + +
Sbjct: 332 EIITDLLRS 340
>UNIPROTKB|C9JTY5 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00978070 ProteinModelPortal:C9JTY5 SMR:C9JTY5
STRING:C9JTY5 Ensembl:ENST00000466412 ArrayExpress:C9JTY5
Bgee:C9JTY5 Uniprot:C9JTY5
Length = 124
Score = 134 (52.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 39/112 (34%), Positives = 64/112 (57%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G A V A
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST---AAVFHA 75
Query: 141 MDA-AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ A ++ + + P N + ++RL++P++Q +LIGK G+ I
Sbjct: 76 VSMIAFKLDEDLCAAPANGGNVSRPPV---TLRLVIPASQCGSLIGKAGTKI 124
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 122 (48.0 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 41/131 (31%), Positives = 70/131 (53%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ A + + +G + P+RI+ ++G P +
Sbjct: 29 RLLMQGKEVGSIIGKKGESVKKR-EESGAHLNISEG--NCPERIITLAG------PTNAT 79
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A + K + ++ A+ S RL+VP +Q +LIGK IK + E +G
Sbjct: 80 FKAFAMI-KLEEDRSRSMTNSTAASRPVTS-RLVVPDSQCGSLIGKGICKIKEVGETTGP 137
Query: 201 SVRVLSADEAP 211
V+V + D P
Sbjct: 138 -VQV-AGDMLP 146
Score = 74 (31.1 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 326 TIRSSALGRASGPIVTQITQTMQI-PISYAEDIIGVGGTSIENIRRTSGAIITVQESRGL 384
T ++ G +G + T + ++ P IIG G I I + SGA I + G
Sbjct: 264 TCGNTGFGIEAGSDASAQTTSHELTPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPEGS 323
Query: 385 PDEITVEIKGTSSQVQLAQQLI 406
D V I G ++ + LAQ LI
Sbjct: 324 TDR-QVTITGPAASISLAQYLI 344
Score = 37 (18.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 17/84 (20%), Positives = 34/84 (40%)
Query: 280 ATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPI 339
A+ S E TP+ + + ++ +++SG I +P ST R + +GP
Sbjct: 278 ASAQTTSHELTPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPEGSTDRQVTI---TGPA 334
Query: 340 VTQITQTMQIPISYAEDIIGVGGT 363
+ I + + + G G +
Sbjct: 335 ASISLAQYLINVRLSPETGGTGSS 358
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 120 (47.3 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 40/125 (32%), Positives = 70/125 (56%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSII + E +KK E + ARI + +G + P+RI+ ++G P
Sbjct: 20 RLLMHGKEVGSIIRKSRESVKKLQEKS-ARINISEG--NCPERIITLAG---------PT 67
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVR--LLVPSTQAINLIGKQGSLIKSIQENS 198
+A + F + PE D+ + + + S +VP++Q +LIGK G+ IK I+E++
Sbjct: 68 -NAIFKAFAMIIDKPEEDISSSMTNSTAASRPPVTVVPASQCGSLIGK-GT-IKEIREST 124
Query: 199 GASVR 203
GA V+
Sbjct: 125 GAQVQ 129
Score = 74 (31.1 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 345 QTMQIPISYAEDIIG--VG--GTSIENIRRTSGAII-TVQESRGLPDEITVEIKGTSSQV 399
QT ++ D+IG +G G I IR+ SGA I T G D V I G ++ +
Sbjct: 243 QTTSHELTLPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDR-QVTITGPAASI 301
Query: 400 QLAQQLIQEYMNN 412
LAQ LI +++
Sbjct: 302 SLAQYLINARLSS 314
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 91 (37.1 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 151 VSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL 205
V + E D+ + + + S +RL+VP++Q +LIGK G IK I+E++GA V+V
Sbjct: 36 VKKMREEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV- 94
Query: 206 SADEAP 211
+ D P
Sbjct: 95 AGDMLP 100
Score = 79 (32.9 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISG 129
R++VP + GS+IG+ G IK+ E T A+++V D +S +R + I+G
Sbjct: 62 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 111
Score = 77 (32.2 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 250 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 308
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 309 INVRLSSETGGMGSS 323
Score = 64 (27.6 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCED 106
R+++ +VGSIIG+KGE +KK E+
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREE 42
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 154 (59.3 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 53/170 (31%), Positives = 84/170 (49%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P ++GP +A P ++ V + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 384 PPTSGPPSAMTPPYPQFEQSETETV-HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI- 441
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P +PD R+V+I+G PEA A R++ ++ EN V K +
Sbjct: 442 -APAEAPDAKVRMVIITGP--PEAQFK----AQGRIYGKIK--EENFVSPKEEVKLEAHI 492
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
R VPS A +IGK G + +Q S A V V+ D+ P E++++V
Sbjct: 493 R--VPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTP---DENDQVV 536
Score = 86 (35.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 32/138 (23%), Positives = 65/138 (47%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV--LDGPVSSPDRIVLISGKEEPEAPVS 138
R++VP VG+IIG++G I+ + T+++I V + ++ I ++S PE S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILS---TPEG-TS 254
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A + + + + + D K + +++L + LIGK+G +K I++++
Sbjct: 255 AACKSILEIMHKEAQ------DIKFTEEI--PLKILAHNNFVGRLIGKEGRNLKKIEQDT 306
Query: 199 GASVRVLSADEAPFYVTE 216
+ + E Y E
Sbjct: 307 DTKITISPLQELTLYNPE 324
Score = 83 (34.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P A +IG GG ++ ++ S A + V + PDE + V+I G Q+AQ
Sbjct: 492 IRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQ-TPDENDQVVVKITGHFYACQVAQ 550
Query: 404 QLIQEYMNNHKE 415
+ IQE + K+
Sbjct: 551 RKIQEILTQVKQ 562
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 154 (59.3 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 53/170 (31%), Positives = 84/170 (49%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P ++GP +A P ++ V + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 384 PPTSGPPSAMTPPYPQFEQSETETV-HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI- 441
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P +PD R+V+I+G PEA A R++ ++ EN V K +
Sbjct: 442 -APAEAPDAKVRMVIITGP--PEAQFK----AQGRIYGKIK--EENFVSPKEEVKLEAHI 492
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
R VPS A +IGK G + +Q S A V V+ D+ P E++++V
Sbjct: 493 R--VPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTP---DENDQVV 536
Score = 86 (35.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 32/138 (23%), Positives = 65/138 (47%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV--LDGPVSSPDRIVLISGKEEPEAPVS 138
R++VP VG+IIG++G I+ + T+++I V + ++ I ++S PE S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILS---TPEG-TS 254
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A + + + + + D K + +++L + LIGK+G +K I++++
Sbjct: 255 AACKSILEIMHKEAQ------DIKFTEEI--PLKILAHNNFVGRLIGKEGRNLKKIEQDT 306
Query: 199 GASVRVLSADEAPFYVTE 216
+ + E Y E
Sbjct: 307 DTKITISPLQELTLYNPE 324
Score = 83 (34.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P A +IG GG ++ ++ S A + V + PDE + V+I G Q+AQ
Sbjct: 492 IRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQ-TPDENDQVVVKITGHFYACQVAQ 550
Query: 404 QLIQEYMNNHKE 415
+ IQE + K+
Sbjct: 551 RKIQEILTQVKQ 562
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 154 (59.3 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 52/170 (30%), Positives = 83/170 (48%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P ++GP +A P ++ + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 384 PPTSGPPSAITPPYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI- 442
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P +PD R+V+I+G PEA A R++ ++ EN V K +
Sbjct: 443 -APAEAPDAKVRMVIITGP--PEAQFK----AQGRIYGKIK--EENFVSPKEEVKLEAHI 493
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
R VPS A +IGK G + +Q S A V V+ D+ P E++++V
Sbjct: 494 R--VPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTP---DENDQVV 537
Score = 86 (35.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 32/138 (23%), Positives = 65/138 (47%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV--LDGPVSSPDRIVLISGKEEPEAPVS 138
R++VP VG+IIG++G I+ + T+++I V + ++ I ++S PE S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILS---TPEG-TS 254
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A + + + + + D K + +++L + LIGK+G +K I++++
Sbjct: 255 AACKSILEIMHKEAQ------DIKFTEEI--PLKILAHNNFVGRLIGKEGRNLKKIEQDT 306
Query: 199 GASVRVLSADEAPFYVTE 216
+ + E Y E
Sbjct: 307 DTKITISPLQELTLYNPE 324
Score = 83 (34.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P A +IG GG ++ ++ S A + V + PDE + V+I G Q+AQ
Sbjct: 493 IRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQ-TPDENDQVVVKITGHFYACQVAQ 551
Query: 404 QLIQEYMNNHKE 415
+ IQE + K+
Sbjct: 552 RKIQEILTQVKQ 563
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 127 (49.8 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 39/96 (40%), Positives = 50/96 (52%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
G D + + R S G GPI+T TQ + IP A IIG GG I+ IR SGA I +
Sbjct: 304 GYDYSYAGGRGS-YGDLGGPIIT--TQ-VTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 359
Query: 379 QES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
E G D I + I GT Q+Q AQ L+Q + +
Sbjct: 360 DEPLEGSEDRI-ITITGTQDQIQNAQYLLQNSVKQY 394
Score = 67 (28.6 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEE 132
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E
Sbjct: 20 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSISADIE 69
Score = 56 (24.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+L+ S A +IGK G IK+++ + ASV V
Sbjct: 19 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 52
Score = 41 (19.5 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 120 SPDRIVLISGKEE 132
S DR+VLI GK +
Sbjct: 124 STDRVVLIGGKPD 136
>UNIPROTKB|A6QP83 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
GeneTree:ENSGT00650000093048 CTD:8939 OMA:AAPHQNT OrthoDB:EOG4X97H1
EMBL:DAAA02032235 EMBL:DAAA02032236 EMBL:BC149198 IPI:IPI00714784
RefSeq:NP_001094687.1 UniGene:Bt.2190 SMR:A6QP83
Ensembl:ENSBTAT00000017383 GeneID:541080 KEGG:bta:541080
InParanoid:A6QP83 NextBio:20878996 Uniprot:A6QP83
Length = 572
Score = 112 (44.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 34/126 (26%), Positives = 62/126 (49%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAPVSPAM 141
+P KVG +IG+ GE IK+ E T + + + DGP+ + D+ + I+G +P V A
Sbjct: 169 IPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG--DP-FKVQQAR 225
Query: 142 DAAVRVFKRVSGLP----ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
+ + + + D ++ G S+ + VP +IG+ G +IK IQ +
Sbjct: 226 EMVLEIIREKDQADFRGVRGDFSSRMGGG---SIEVSVPRFAVGIVIGRNGEMIKKIQND 282
Query: 198 SGASVR 203
+G ++
Sbjct: 283 AGVRIQ 288
Score = 110 (43.8 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 37/137 (27%), Positives = 66/137 (48%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRL 140
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P NDVD ++ + +P+++ +IGK G IK +QE +G
Sbjct: 141 LGQIVDRCRNGPGFHNDVDGNSTVQ-----EIPIPASKVGLVIGKGGETIKQLQERTG-- 193
Query: 202 VRVLSADEAPFYVTEDE 218
V+++ + P D+
Sbjct: 194 VKMVMIQDGPLPTGADK 210
Score = 87 (35.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 27/106 (25%), Positives = 50/106 (47%)
Query: 331 ALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGL---PDE 387
++G G + ++T T +P +IG GG +I++I + SGA + +Q + P+
Sbjct: 347 SVGTPGG--IQEVTYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPSTDPNL 402
Query: 388 ITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
I+G Q+++A+ LI E + +GQ P+ P
Sbjct: 403 RIFTIRGLPPQIEVARHLIDEKVGGTSIGAPGPFGQSPFSQPPAAP 448
Score = 59 (25.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
+IG G I+ I+ +G I + G+ E ++ G + Q A +I E + +E
Sbjct: 268 VIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVISELILTAQE 326
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 111 (44.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 43/145 (29%), Positives = 67/145 (46%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R IV + G IIG+ G+ + ++T + V DR++ ++G +S
Sbjct: 230 RAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGA------LSGT 283
Query: 141 MDAAVRVFKRV-SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A V K + G P+ + S +RLL+ Q +IG+QG IK IQ+ SG
Sbjct: 284 ARAYALVAKGLLEGAPQMGMGGIVSNNGTHPIRLLISHNQMGTIIGRQGLKIKHIQDASG 343
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQ 224
VR+++ E ERIVE+Q
Sbjct: 344 --VRMVAQKE--MLPQSTERIVEVQ 364
Score = 86 (35.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVE----IKGTSSQV 399
TQ + IP IIG GGT I IRR+SGA I++ ++ P + T E I G++
Sbjct: 463 TQNISIPADMVGCIIGRGGTKITEIRRSSGARISIAKA---PHDETGERMFTIMGSAQAN 519
Query: 400 QLAQQLIQEYMNNHK 414
+ A L+ E + K
Sbjct: 520 EKALYLLYENLEAEK 534
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 111 (44.1 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
TQ+T IP A IIG GG I IR S A IT+ E ++ + I GT Q+Q
Sbjct: 423 TQVT----IPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQ 478
Query: 401 LAQQLIQEYMNNHKE 415
+AQ L+Q+ + H+E
Sbjct: 479 MAQYLLQQSV--HEE 491
Score = 65 (27.9 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEE 132
R+++P G++IG+ G+ I+K +A + V D P+R + IS E
Sbjct: 26 RILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGPERTIQISADIE 75
Score = 60 (26.2 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 156 ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
E D K + + +VR+L+PS+ A +IGK G I+ ++ A+V V
Sbjct: 10 EGPQDQKRNRRSEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSV 58
Score = 57 (25.1 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
VRLL+ + A +IGK G IK I++ G + ++ AP +R+V+
Sbjct: 97 VRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP---QSTDRVVQ 145
Score = 56 (24.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKE 131
R+++ G +IG+ G+ IK+ + R +KV S DR+V GK+
Sbjct: 98 RLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQSTDRVVQTVGKQ 150
Score = 38 (18.4 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 179 QAINLIGKQGSLIKSIQE 196
+ + +GKQ +I++++E
Sbjct: 142 RVVQTVGKQSQVIEAVRE 159
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 150 (57.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 52/170 (30%), Positives = 83/170 (48%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P ++GP + P ++ V + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 384 PPTSGPPSTLTPPYPQFEQSETETV-HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI- 441
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P +PD R+V+I+G PEA A R++ ++ EN V K +
Sbjct: 442 -APAEAPDAKVRMVIITGP--PEAQFK----AQGRIYGKIK--EENFVSPKEEVKLEAHI 492
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
R VPS A +IGK G + +Q S A V V+ D+ P E++++V
Sbjct: 493 R--VPSFAAGRVIGKGGKTVNELQSLSSAEV-VVPRDQTP---DENDQVV 536
Score = 86 (35.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 32/138 (23%), Positives = 65/138 (47%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV--LDGPVSSPDRIVLISGKEEPEAPVS 138
R++VP VG+IIG++G I+ + T+++I V + ++ I ++S PE S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILS---TPEG-TS 254
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A + + + + + D K + +++L + LIGK+G +K I++++
Sbjct: 255 AACKSILEIMHKEAQ------DIKFTEEI--PLKILAHNNFVGRLIGKEGRNLKKIEQDT 306
Query: 199 GASVRVLSADEAPFYVTE 216
+ + E Y E
Sbjct: 307 DTKITISPLQELTLYNPE 324
Score = 82 (33.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P A +IG GG ++ ++ S A + V + PDE + V+I G Q+AQ
Sbjct: 492 IRVPSFAAGRVIGKGGKTVNELQSLSSAEVVVPRDQ-TPDENDQVVVKITGHFYACQVAQ 550
Query: 404 QLIQEYMNNHKE 415
+ IQE + K+
Sbjct: 551 RKIQEILTQVKQ 562
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 132 (51.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 46/174 (26%), Positives = 79/174 (45%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P T P+ G G ++++P GSIIG+ G+ I + ++T A IK+
Sbjct: 12 PLETPPEVVCTKRSNT--GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLS 69
Query: 115 DGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKAS--GAA 167
P +R+ L+ G E V + VR + PE N + + +
Sbjct: 70 KSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDR 129
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+L+VP++ A +IGK G+ +K++ E SGA V++ + P + ER+V
Sbjct: 130 AKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVV 180
Score = 60 (26.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITV-QESRGLPDEIT--VEIKGTSSQVQLAQQL 405
+P + I+G GG ++ + +GA I + ++ LP V I G+ + Q AQ L
Sbjct: 413 VPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYL 472
Query: 406 IQEYMNNHKESITSSYGQ 423
I + + +++ + +S Q
Sbjct: 473 ISQRVT-YEQGVRASNPQ 489
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 132 (51.5 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 49/183 (26%), Positives = 81/183 (44%)
Query: 46 HTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCE 105
H E P P A EE G ++++P GSIIG+ G+ I + +
Sbjct: 18 HQAEGGDPPPDCPPPSPCAPAEE-------GEYFLKVLIPSYAAGSIIGKGGQTIVQLQK 70
Query: 106 DTRARIKVLDGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPE--NDVD 160
+T A IK+ P +R+ L+ G E V + VR + PE N +
Sbjct: 71 ETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQ 130
Query: 161 AKAS--GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDE 218
+ + +L+VP++ A +IGK G+ +K++ E SGA V++ + P + E
Sbjct: 131 PQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQE 187
Query: 219 RIV 221
R+V
Sbjct: 188 RVV 190
Score = 60 (26.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITV-QESRGLPDEIT--VEIKGTSSQVQLAQQL 405
+P + I+G GG ++ + +GA I + ++ LP V I G+ + Q AQ L
Sbjct: 423 VPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYL 482
Query: 406 IQEYMNNHKESITSSYGQ 423
I + + +++ + +S Q
Sbjct: 483 ISQRVT-YEQGVRASNPQ 499
>UNIPROTKB|Q8UVD9 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9031 "Gallus gallus" [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0005737 GO:GO:0003730
GO:GO:0008298 GO:GO:0051028 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 EMBL:AF461020 IPI:IPI00589044
RefSeq:NP_989608.1 UniGene:Gga.94 ProteinModelPortal:Q8UVD9
SMR:Q8UVD9 PRIDE:Q8UVD9 GeneID:374140 KEGG:gga:374140 CTD:8570
NextBio:20813655 Uniprot:Q8UVD9
Length = 769
Score = 126 (49.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 38/119 (31%), Positives = 58/119 (48%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G PEA V A
Sbjct: 215 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGS--PEA-VQKAKLM 271
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASV 202
+ R G P A+G +++P+ +A +IGK G IK +QE +G +
Sbjct: 272 LDDIVSRGRGGPPGQFHDYANGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 330
Score = 71 (30.1 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLA 402
T IP +IG GG +++ I + GA + + G P+ I+G+ Q++ A
Sbjct: 490 TFSIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHA 549
Query: 403 QQLIQE 408
+Q I+E
Sbjct: 550 KQPIEE 555
Score = 53 (23.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
+IG G I+ I+ +G I ++ G E I G + + A ++I + + +
Sbjct: 400 VIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPERCEHAARIINDLLQS 455
>UNIPROTKB|K7GM69 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000034893 Uniprot:K7GM69
Length = 202
Score = 136 (52.9 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGK 130
+P + + +P VG+IIG+KG IK+ A IK+ P PD R+V+I+G
Sbjct: 19 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPDVSERMVIITGP 76
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PEA A R+F ++ EN + K +R VPS+ A +IGK G
Sbjct: 77 --PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKT 126
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +Q + A V ++ D+ P E+E ++
Sbjct: 127 VNELQNLTSAEV-IVPRDQTP---DENEEVI 153
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 132 (51.5 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 46/174 (26%), Positives = 79/174 (45%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P T P+ G G ++++P GSIIG+ G+ I + ++T A IK+
Sbjct: 74 PLETPPEVVCTKRSNT--GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLS 131
Query: 115 DGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKAS--GAA 167
P +R+ L+ G E V + VR + PE N + + +
Sbjct: 132 KSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDR 191
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+L+VP++ A +IGK G+ +K++ E SGA V++ + P + ER+V
Sbjct: 192 AKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVV 242
Score = 60 (26.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITV-QESRGLPDEIT--VEIKGTSSQVQLAQQL 405
+P + I+G GG ++ + +GA I + ++ LP V I G+ + Q AQ L
Sbjct: 475 VPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYL 534
Query: 406 IQEYMNNHKESITSSYGQ 423
I + + +++ + +S Q
Sbjct: 535 ISQRVT-YEQGVRASNPQ 551
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 118 (46.6 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 39/125 (31%), Positives = 69/125 (55%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSII + E +KK ++ ARI + +G + P+RI+ ++G P
Sbjct: 17 RLLMHGKEVGSIIRKSRESVKKL-QEKGARINISEG--NCPERIITLAG---------PT 64
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVR--LLVPSTQAINLIGKQGSLIKSIQENS 198
+A + F + PE D+ + + + S +VP++Q +LIGK G IK I+E++
Sbjct: 65 -NAIFKAFAMIIDKPEEDISSSMTNSTAASRPPVTVVPASQCGSLIGK-GK-IKEIREST 121
Query: 199 GASVR 203
GA V+
Sbjct: 122 GAQVQ 126
Score = 67 (28.6 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 24/73 (32%), Positives = 35/73 (47%)
Query: 345 QTMQIPISYAEDIIG--VG--GTSIENIRRTSGAII-TVQESRGLPDEITVEIKGTSSQV 399
QT ++ D+IG +G I IR+ SGA I T G D V I G ++ +
Sbjct: 232 QTTSHELTLPNDLIGCIIGRQDAKINEIRQMSGAQIKTANPVEGSTDR-QVTITGPAASI 290
Query: 400 QLAQQLIQEYMNN 412
LAQ LI +++
Sbjct: 291 SLAQYLINARLSS 303
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 147 (56.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 53/173 (30%), Positives = 83/173 (47%)
Query: 52 SALPQSTGP-DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRAR 110
S LP S G AAA + P V + +P VG+IIG+KG+ IK+ A
Sbjct: 352 SMLPSSAGARGAAAAAPYHPFAQLPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGAS 411
Query: 111 IKVL--DGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAF 168
IK+ +GP + +R+V+I+G PEA A R+F ++ EN + K
Sbjct: 412 IKIAPAEGP-DATERMVIITGP--PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLE 462
Query: 169 CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
++ VPS A +IGK G + +Q + A V ++ D+ P E+E ++
Sbjct: 463 AHIK--VPSFAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 509
Score = 105 (42.0 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 34/161 (21%), Positives = 72/161 (44%)
Query: 56 QSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD 115
Q + P ++ P++ +P RM+VP VG+IIG++G IK + T++++ +
Sbjct: 152 QGSSPGGSSQPKQLDFP-------LRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDI-- 202
Query: 116 GPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLV 175
R E+P + + + + + + + D S A +++L
Sbjct: 203 ------HRKENAGAAEKP-ITIHATPEGCSEACRMILDIMQKEADETKS-AEEIPLKILA 254
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
++ LIGK+G +K I++++G + + + Y E
Sbjct: 255 HNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLTIYNPE 295
Score = 68 (29.0 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P A +IG GG ++ ++ + A + V + PDE + V+I G Q AQ
Sbjct: 465 IKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVKIIGHFFASQTAQ 523
Query: 404 QLIQEYMNNHKE 415
+ I+E + K+
Sbjct: 524 RKIREIVQQVKQ 535
Score = 62 (26.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 47/197 (23%), Positives = 81/197 (41%)
Query: 240 HLRKFLVDQGVLPLFEKTYNASI-SQERQVETWADKSSLHAATQSAIST--EYTPSTRRE 296
+L+K D G + +I + ER + K S A + + + + + +
Sbjct: 269 NLKKIEQDTGTKITISPLQDLTIYNPERTITV---KGSTEACSNAEVEIMKKLREAYEND 325
Query: 297 SLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGR---ASGPI--VTQITQ----TM 347
+ + ++ L LS + I+ LS + SSA R A+ P Q+ + +
Sbjct: 326 IVAVNQQANLIPGLNLSALGIFST--GLSMLPSSAGARGAAAAAPYHPFAQLPEQEVVNL 383
Query: 348 QIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPD--EITVEIKGT-----SSQVQ 400
IP IIG G I+ + R +GA I + + G PD E V I G +Q +
Sbjct: 384 FIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEG-PDATERMVIITGPPEAQFKAQGR 442
Query: 401 LAQQLIQEYMNNHKESI 417
+ +L +E N KE +
Sbjct: 443 IFGKLKEENFFNPKEEV 459
>TAIR|locus:2140513 [details] [associations]
symbol:AT4G10070 "AT4G10070" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0009688 "abscisic acid biosynthetic process"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002687 GO:GO:0003723
UniGene:At.33655 IPI:IPI01020077 RefSeq:NP_192745.2
ProteinModelPortal:F4JLJ3 SMR:F4JLJ3 EnsemblPlants:AT4G10070.1
GeneID:826598 KEGG:ath:AT4G10070 OMA:PSTHAIG ArrayExpress:F4JLJ3
Uniprot:F4JLJ3
Length = 725
Score = 110 (43.8 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 40/119 (33%), Positives = 55/119 (46%)
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA---- 374
G PAL R A G I QI +++P IIG GG +I+N++ SGA
Sbjct: 252 GGSPAL-VARGHPSTHAIG-IPEQIE--IKVPNDKVGLIIGRGGETIKNMQTRSGARTQL 307
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
I E GL + TV I G Q+ +A +I++ MN + + S G YRP P
Sbjct: 308 IPQHAEGDGLKER-TVRISGDKMQIDIATDMIKDVMNQNARPSSYSGGYNQPAYRPQGP 365
Score = 85 (35.0 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 152 SGLPEN-DVDAKAS-----GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL 205
+G EN +VD + S G + R+ VPS++ LIGK G I+ +Q NSGA +++L
Sbjct: 153 NGKEENKEVDGEKSQKEVDGTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQIL 212
Query: 206 SADEA 210
EA
Sbjct: 213 RDSEA 217
>UNIPROTKB|F1MX51 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:DAAA02008247
EMBL:DAAA02008246 IPI:IPI00698543 Ensembl:ENSBTAT00000011751
Uniprot:F1MX51
Length = 602
Score = 107 (42.7 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 34/128 (26%), Positives = 61/128 (47%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 67 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDI 126
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G CS +++P+++A L+GK G I + +E +G V+
Sbjct: 127 -VEKGRPAPGFHHGD------GPK-CSSEIMIPASKA-GLVGKGGETINNSEERAG--VK 175
Query: 204 VLSADEAP 211
++ + P
Sbjct: 176 MVMIQDGP 183
Score = 86 (35.3 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQL 405
+P IIG GG +I++I + SGA I +Q + P+ I+GT Q+ A+QL
Sbjct: 340 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 399
Query: 406 IQE 408
I+E
Sbjct: 400 IEE 402
Score = 57 (25.1 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 347 MQIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIKGTSSQVQLAQ 403
+ +PI +A I IG G I+ I+ +G I + G PD I +I G + Q A
Sbjct: 235 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIA-QITGPPDRCQHAA 293
Query: 404 QLIQEYMNN 412
++I + + +
Sbjct: 294 EIITDLLRS 302
>UNIPROTKB|F1LXN9 [details] [associations]
symbol:F1LXN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 IPI:IPI00777906
Ensembl:ENSRNOT00000017403 Uniprot:F1LXN9
Length = 376
Score = 108 (43.1 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 31/75 (41%), Positives = 37/75 (49%)
Query: 339 IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQ 398
I TQIT IP IIG GG I+ I SGA I E G D I + I GT Q
Sbjct: 299 ITTQIT----IPKDLTGSIIGEGGQRIKQICHESGASIKTDELEGSEDRIII-ITGTQDQ 353
Query: 399 VQLAQQLIQEYMNNH 413
+Q AQ L+Q + +
Sbjct: 354 IQNAQYLLQNSVKQY 368
Score = 77 (32.2 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEE 132
C +++ G IIG KG +K+ E+T+ +K + S DR+VLI GK +
Sbjct: 92 CELGLLIQQSLAGGIIGVKGAKVKELRENTQTTVKRFQEWCPHSTDRVVLIGGKPD 147
Score = 68 (29.0 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 29/123 (23%), Positives = 54/123 (43%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ G++IG+ IK D A I V D S P+ I+ I + +
Sbjct: 20 RILLQSENAGAVIGKN---IKALRTDYSASISVPDS--SGPEHILSIGADIKT---IGEI 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ V + +D D C + LL+ + A +IG +G+ +K ++EN+
Sbjct: 72 LRKIVPTLEECQHYRGSDFD--------CELGLLIQQSLAGGIIGVKGAKVKELRENTQT 123
Query: 201 SVR 203
+V+
Sbjct: 124 TVK 126
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 126 (49.4 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 42/153 (27%), Positives = 74/153 (48%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 3 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 62
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKAS--GAAFCSVRLLVPSTQAINLIGKQG 188
V + VR + PE N + + + +L+VP++ A +IGK G
Sbjct: 63 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGG 122
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +K++ E SGA V++ + P + ER+V
Sbjct: 123 ATVKAVMEQSGAWVQL---SQKPEGINLQERVV 152
Score = 60 (26.2 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITV-QESRGLPDEIT--VEIKGTSSQVQLAQQL 405
+P + I+G GG ++ + +GA I + ++ LP V I G+ + Q AQ L
Sbjct: 385 VPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYL 444
Query: 406 IQEYMNNHKESITSSYGQ 423
I + + +++ + +S Q
Sbjct: 445 ISQRVT-YEQGVRASNPQ 461
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 95 (38.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QESRGLPDEITVEIKGTSSQVQ 400
++TQ + IP IIG GG+ I IRRTSG+ I++ +E E I GT + +
Sbjct: 320 KVTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITGTHEENE 379
Query: 401 LAQQLIQEYMNNHKE 415
A L+ + + K+
Sbjct: 380 KALFLLYQQLEMEKD 394
Score = 90 (36.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 43/170 (25%), Positives = 69/170 (40%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P S P +A P R ++ + G IIG+ G+ + + T + V
Sbjct: 71 PTSQVPPISAKPPMDDATYATQQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVT 130
Query: 115 DGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV-DAKASGAAFCSVRL 173
+ DR++ ISG P V A + +F + S P+ DA +RL
Sbjct: 131 KAVPNVHDRVLTISG---PLENVVRAYRFIIDIFAKNSTNPDGTPSDANTPR----KLRL 183
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
L+ + ++IG+ G IK IQ+ + + S D P ER VE+
Sbjct: 184 LIAHSLMGSIIGRNGLRIKLIQDKCSCRM-IASKDMLP---QSTERTVEI 229
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 123 (48.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 51/192 (26%), Positives = 86/192 (44%)
Query: 42 ENTEHT-TESDSALPQSTGPDAAAVPE----EKKWPGWPGHCVFRMIVPVLKVGSIIGRK 96
+N HT D P S A PE ++ G G ++++P GSIIG+
Sbjct: 8 QNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKG 67
Query: 97 GELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVF-KRVS 152
G+ I + ++T A IK+ P +R+ LI G E V + +R + V+
Sbjct: 68 GQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVA 127
Query: 153 GLPENDV---DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADE 209
+ + V+++VP++ A +IGK G+ +K+I E SGA V++ +
Sbjct: 128 KTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQ 184
Query: 210 APFYVTEDERIV 221
P + ER+V
Sbjct: 185 KPDGINLQERVV 196
Score = 61 (26.5 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 323 ALSTIRSSA-LGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QE 380
A S + +SA LG ++ + +P + I+G GG ++ + +GA I + ++
Sbjct: 376 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 435
Query: 381 SRGLPDEIT--VEIKGTSSQVQLAQQLIQE 408
+P V I GT + Q AQ LI +
Sbjct: 436 GEFVPGTRNRKVTITGTPAATQAAQYLITQ 465
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 123 (48.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 51/192 (26%), Positives = 86/192 (44%)
Query: 42 ENTEHT-TESDSALPQSTGPDAAAVPE----EKKWPGWPGHCVFRMIVPVLKVGSIIGRK 96
+N HT D P S A PE ++ G G ++++P GSIIG+
Sbjct: 8 QNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKG 67
Query: 97 GELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVF-KRVS 152
G+ I + ++T A IK+ P +R+ LI G E V + +R + V+
Sbjct: 68 GQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVA 127
Query: 153 GLPENDV---DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADE 209
+ + V+++VP++ A +IGK G+ +K+I E SGA V++ +
Sbjct: 128 KTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQ 184
Query: 210 APFYVTEDERIV 221
P + ER+V
Sbjct: 185 KPDGINLQERVV 196
Score = 61 (26.5 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 323 ALSTIRSSA-LGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QE 380
A S + +SA LG ++ + +P + I+G GG ++ + +GA I + ++
Sbjct: 376 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 435
Query: 381 SRGLPDEIT--VEIKGTSSQVQLAQQLIQE 408
+P V I GT + Q AQ LI +
Sbjct: 436 GEFVPGTRNRKVTITGTPAATQAAQYLITQ 465
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 123 (48.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 50/192 (26%), Positives = 86/192 (44%)
Query: 42 ENTEHT-TESDSALPQSTGPDAAAVPE----EKKWPGWPGHCVFRMIVPVLKVGSIIGRK 96
+N HT D P S A PE ++ G G ++++P GSIIG+
Sbjct: 9 QNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKG 68
Query: 97 GELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVF-KRVS 152
G+ I + ++T A IK+ P +R+ LI G E V + +R + V+
Sbjct: 69 GQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVA 128
Query: 153 GLPENDV---DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADE 209
+ + V+++VP++ A +IGK G+ +K++ E SGA V++ +
Sbjct: 129 KTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQ 185
Query: 210 APFYVTEDERIV 221
P + ER+V
Sbjct: 186 KPDGINLQERVV 197
Score = 61 (26.5 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 323 ALSTIRSSA-LGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QE 380
A S + +SA LG ++ + +P + I+G GG ++ + +GA I + ++
Sbjct: 377 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 436
Query: 381 SRGLPDEIT--VEIKGTSSQVQLAQQLIQE 408
+P V I GT + Q AQ LI +
Sbjct: 437 GEFVPGTRNRKVTITGTPAATQAAQYLITQ 466
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 125 (49.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 49/180 (27%), Positives = 81/180 (45%)
Query: 50 SDSAL-PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTR 108
SDS P T +A++ G G ++++P GSIIG+ G+ I + ++T
Sbjct: 30 SDSRKRPLETPTEASSTKRSNT--GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETG 87
Query: 109 ARIKVLDGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEN----DVDA 161
A IK+ P +R+ LI G E V + VR + S E
Sbjct: 88 ATIKLSKSKDFYPGTTERVCLIQGTVEALNGVHNFIAEKVREMPQSSQKTEPVSILQPQT 147
Query: 162 KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +L+VP++ A +IGK G+ +K++ E SGA V++ + P + ER+V
Sbjct: 148 TVNPDRIKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVV 204
Score = 59 (25.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 22/91 (24%), Positives = 41/91 (45%)
Query: 321 DPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-Q 379
+P+ + SS LG + + +P + I+G GG ++ + +GA I + +
Sbjct: 388 NPSSPLVASSLLGTEKLAEGGKEVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISK 447
Query: 380 ESRGLPDEIT--VEIKGTSSQVQLAQQLIQE 408
+ +P V I G+ + Q AQ LI +
Sbjct: 448 KGEFIPGTRNRKVTITGSPAATQAAQYLISQ 478
>UNIPROTKB|F1NV59 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AADN02012752 IPI:IPI00579990
Ensembl:ENSGALT00000014526 ArrayExpress:F1NV59 Uniprot:F1NV59
Length = 632
Score = 118 (46.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 34/128 (26%), Positives = 60/128 (46%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 104 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 163
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 164 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 215
Query: 204 VLSADEAP 211
++ + P
Sbjct: 216 MVMIQDGP 223
Score = 69 (29.3 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 358 IGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQLIQE 408
+ + G +I++I + SGA I +Q + P+ I+GT Q+ A+QLI+E
Sbjct: 379 VSLRGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQLIEE 432
Score = 58 (25.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 348 QIPIS-YAEDI-IGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIKGTSSQVQLAQQ 404
++PI +A I IG G I+ I+ +G I + G PD I +I G + Q A +
Sbjct: 260 EVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIA-QITGPPDRCQHAAE 318
Query: 405 LIQEYMNN 412
+I + + +
Sbjct: 319 IITDLLRS 326
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 110 (43.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 42/164 (25%), Positives = 78/164 (47%)
Query: 67 EEKKWPGWPG---HCVF--RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV-LDGPVSS 120
+ +PG PG F R++V VG+IIGR+G I+ + +RAR+ V V S
Sbjct: 77 QRNPYPGMPGPGRQADFPLRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENVGS 136
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQA 180
++ + I G PE + A + V ++ + N + + C +++L +
Sbjct: 137 LEKSITIYGN--PENCTN-ACKRILEVMQQ-EAISTNKGELSPECSEIC-LKILAHNNLI 191
Query: 181 INLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
+IGK G+ IK I +++ + V S ++ + E RI+ ++
Sbjct: 192 GRIIGKSGNTIKRIMQDTDTKITVSSINDINSFNLE--RIITVK 233
Score = 76 (31.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLP----DEIT-VEIKGTS 396
++T + + S IIG GG ++ ++R +G++I + E P DE T V I G
Sbjct: 403 RLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLF 462
Query: 397 SQVQLAQQLIQEYM 410
VQ AQ+ I+ M
Sbjct: 463 YSVQSAQRRIRAMM 476
Score = 53 (23.7 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 25/74 (33%), Positives = 33/74 (44%)
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQE-SRGLP-DEIT---VEIKGTS 396
Q T + IP + IIG G+ I +I R S A + + P D+ T V I GT
Sbjct: 317 QETTYLYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGTP 376
Query: 397 SQVQLAQQLIQEYM 410
AQ +I E M
Sbjct: 377 EGQWKAQYMIFEKM 390
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 117 (46.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 44/153 (28%), Positives = 73/153 (47%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGK- 130
P H R +V GS+IG+ G I + + ARI++ P DRI++ISG
Sbjct: 34 PTH--IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSI 91
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
+E + +D ++ + N+V+ + +RL+VP++ +IGK G+
Sbjct: 92 KEVVNGLELILD---KLHSELHAEDGNEVEPRRR------IRLVVPNSSCGGIIGKGGAT 142
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
IKS E S A +++ D FY D R+V +
Sbjct: 143 IKSFIEESKAGIKISPLDNT-FYGLSD-RLVTL 173
Score = 61 (26.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT---VEIKGTSSQVQ 400
T T+ + + ++G GG +I I + +GA I + + T V I G +Q
Sbjct: 256 TVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQ 315
Query: 401 LAQQLIQEYMNNHKESIT 418
A+ +I++ +++ E T
Sbjct: 316 QAETMIKQKVDSATERTT 333
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 116 (45.9 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 41/163 (25%), Positives = 69/163 (42%)
Query: 40 GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
G + +E E++ D+ + + P RM+ V I+G KG
Sbjct: 29 GEDTSEEQLEAEIKRVALKDADSHSDNDHDSPDNVPSDVHLRMLCLVKHASLIVGHKGAT 88
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
I + +T ARI + + P+RIV + G + V+ A VR G +N
Sbjct: 89 ISRIKSETSARINISNNIRGVPERIVYVRGTCDD---VAKAYGMIVRALLEEHGNEDNGE 145
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASV 202
D + S + LL+P +IGK+GS ++ I++ S A +
Sbjct: 146 DIEIS------INLLIPHHLMGCIIGKRGSRLREIEDLSAAKL 182
Score = 65 (27.9 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 20/87 (22%), Positives = 40/87 (45%)
Query: 322 PALSTIRSSALGRASGP--IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ 379
P ++ + + A G ++ + Q + I + ++IG G I +++ ++G I +Q
Sbjct: 308 PNVTVLDGPVISPAPGNHLLMNFVQQEIFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQ 367
Query: 380 ESRGLPDEITVEIKGTSSQVQLAQQLI 406
+ E + I+GT Q A LI
Sbjct: 368 DPVEGSSERRLTIRGTFMASQAAIMLI 394
>UNIPROTKB|G4N6Y1 [details] [associations]
symbol:MGG_06496 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CM001234
RefSeq:XP_003717064.1 ProteinModelPortal:G4N6Y1
EnsemblFungi:MGG_06496T0 GeneID:2684651 KEGG:mgr:MGG_06496
Uniprot:G4N6Y1
Length = 1256
Score = 107 (42.7 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 27/90 (30%), Positives = 49/90 (54%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEI--KGTSSQVQL 401
T T+ + IG GG++++ +R+ +GA I + R PD TVEI KGT SQV
Sbjct: 841 TATITVQQKQLPHFIGSGGSNMDALRQQTGAKIDIPNGRDTPDS-TVEILIKGTKSQVAA 899
Query: 402 AQQLIQEYMNNHKESITSSYGQIDTGYRPS 431
A+++++E + +++ ++D + S
Sbjct: 900 AKKILEEKKSVFDDTVVREV-EVDRKFHKS 928
Score = 92 (37.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 330 SALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
+AL +A P + T+ P +Y +IG GG+ + IR+ SG ITV + +G D I
Sbjct: 1170 TALAQAKKPSASGYL-TLSDPRTY-RFVIGQGGSKVNQIRKQSGCTITVPK-QGSDDPI- 1225
Query: 390 VEIKGTSSQVQLAQQLI 406
E+ GT ++ A+ LI
Sbjct: 1226 -EVVGTKEGIEKAKDLI 1241
Score = 85 (35.0 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
+V + VP + ++IGKQG+ IK++QE +GA +++ + A +DE +V++
Sbjct: 190 TVTVSVPQSVRPHIIGKQGAAIKALQERTGARIQLPKDNNAQPIDDDDEAMVDV 243
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 137 (53.3 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 46/140 (32%), Positives = 68/140 (48%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGKE 131
P V + +P VG+IIG+KG+ IK+ A IK+ P SPD R+V+I+G
Sbjct: 431 PEQEVVYLFIPTQAVGAIIGKKGQHIKQLARFAGASIKI--APAESPDVTQRMVIITGP- 487
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
PEA A R+F ++ EN AK + VPS+ A +IGK G +
Sbjct: 488 -PEAQFK----AQGRIFGKLK--EENFFTAKEE--VKLETHIKVPSSAAGRVIGKGGKTV 538
Query: 192 KSIQENSGASVRVLSADEAP 211
+Q + A V ++ D+ P
Sbjct: 539 NELQNLTSAEV-IVPRDQTP 557
Score = 108 (43.1 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 43/186 (23%), Positives = 87/186 (46%)
Query: 40 GSENTE--HTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKG 97
G+ N T+ + P ++G +++ +K P +P RM+VP VG+IIG++G
Sbjct: 165 GTRNRRGGRTSREQDSQPGTSG---SSLGSRQKQPDFP----LRMLVPTQFVGAIIGKEG 217
Query: 98 ELIKKTCEDTRARIKV-LDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPE 156
IK + T++++ + + ++ + I PE S A + + ++ +
Sbjct: 218 LTIKNITKQTQSKVDIHRKENAGAAEKPITIHST--PEG-CSTACHMIMDIMQKEA---- 270
Query: 157 NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
VD K + +++L ++ LIGK+G +K I+E++ + + S + Y E
Sbjct: 271 --VDTKVTEDI--PLKILAHNSLVGRLIGKEGRNLKKIEEDTETKITISSLQDLTIYNPE 326
Query: 217 DERIVE 222
IV+
Sbjct: 327 RTIIVK 332
Score = 87 (35.7 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 89 VGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSPDRIVLISGKEEPEAPVSPAMDAAV 145
VG +IG++G +KK EDT +I + D + +P+R +++ G + A V
Sbjct: 290 VGRLIGKEGRNLKKIEEDTETKITISSLQDLTIYNPERTIIVKGS------IEACCRAEV 343
Query: 146 RVFKRVSGLPENDVDA 161
+ K++ ENDV A
Sbjct: 344 EIMKKLREAYENDVAA 359
Score = 76 (31.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P S A +IG GG ++ ++ + A + V + PDE + V+I G Q AQ
Sbjct: 520 IKVPSSAAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENDEVFVKISGHFFASQTAQ 578
Query: 404 QLIQEYMNNHKE 415
+ I+E + K+
Sbjct: 579 RKIREIIQQVKQ 590
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 136 (52.9 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGK 130
+P + + +P VG+IIG+KG IK+ A IK+ P PD R+V+I+G
Sbjct: 302 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPDVSERMVIITGP 359
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PEA A R+F ++ EN + K +R VPS+ A +IGK G
Sbjct: 360 --PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKT 409
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +Q + A V ++ D+ P E+E ++
Sbjct: 410 VNELQNLTSAEV-IVPRDQTP---DENEEVI 436
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 70/361 (19%), Positives = 142/361 (39%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++VP VG+IIG++G IK + T++R+ + + SG E +
Sbjct: 118 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI-----HRKEN----SGAAEKPVTIHAT 168
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + + + + + D + A +++L + LIGK+G +K I+ +G
Sbjct: 169 PEGTSEACRMILEIMQKEAD-ETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGT 227
Query: 201 SVRVLSADEAPFYVTEDERIVEMQXXXXXXXXXXXXXXXHLRKFLVDQGVLPLFEKTYNA 260
+ + S + Y ER + ++ LR+ + + Y +
Sbjct: 228 KITISSLQDLSIY--NPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNTHSGYFS 285
Query: 261 SISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY-- 318
S+ Q + H+ + I + P+ ++ ++ ++ R +G SI
Sbjct: 286 SLYPPHQFGPFPHH---HSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIA 342
Query: 319 -GQDPALST----------IRSSALGRASGPIVTQ----------ITQTMQIPISYAEDI 357
+ P +S + A GR G + + + +++P S A +
Sbjct: 343 PAEGPDVSERMVIITGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRV 402
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQQLIQEYMNNHK 414
IG GG ++ ++ + A + V + PDE + V I G Q AQ+ I+E + K
Sbjct: 403 IGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVRIIGHFFASQTAQRKIREIVQQVK 461
Query: 415 E 415
+
Sbjct: 462 Q 462
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 136 (52.9 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGK 130
+P + + +P VG+IIG+KG IK+ A IK+ P PD R+V+I+G
Sbjct: 323 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPDVSERMVIITGP 380
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PEA A R+F ++ EN + K +R VPS+ A +IGK G
Sbjct: 381 --PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKT 430
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +Q + A V ++ D+ P E+E ++
Sbjct: 431 VNELQNLTSAEV-IVPRDQTP---DENEEVI 457
Score = 96 (38.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 30/136 (22%), Positives = 60/136 (44%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++VP VG+IIG++G IK + T++R+ + + SG E +
Sbjct: 96 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI-----HRKEN----SGAAEKPVTIHAT 146
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + + + + + D + A +++L + LIGK+G +K I+ +G
Sbjct: 147 PEGTSEACRMILEIMQKEAD-ETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGT 205
Query: 201 SVRVLSADEAPFYVTE 216
+ + S + Y E
Sbjct: 206 KITISSLQDLSIYNPE 221
Score = 73 (30.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P S A +IG GG ++ ++ + A + V + PDE + V I G Q AQ
Sbjct: 413 IRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVRIIGHFFASQTAQ 471
Query: 404 QLIQEYMNNHKE 415
+ I+E + K+
Sbjct: 472 RKIREIVQQVKQ 483
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 136 (52.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGK 130
+P + + +P VG+IIG+KG IK+ A IK+ P PD R+V+I+G
Sbjct: 345 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPDVSERMVIITGP 402
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PEA A R+F ++ EN + K +R VPS+ A +IGK G
Sbjct: 403 --PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKT 452
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +Q + A V ++ D+ P E+E ++
Sbjct: 453 VNELQNLTSAEV-IVPRDQTP---DENEEVI 479
Score = 96 (38.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 30/136 (22%), Positives = 60/136 (44%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++VP VG+IIG++G IK + T++R+ + + SG E +
Sbjct: 118 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI-----HRKEN----SGAAEKPVTIHAT 168
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + + + + + D + A +++L + LIGK+G +K I+ +G
Sbjct: 169 PEGTSEACRMILEIMQKEAD-ETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGT 227
Query: 201 SVRVLSADEAPFYVTE 216
+ + S + Y E
Sbjct: 228 KITISSLQDLSIYNPE 243
Score = 73 (30.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P S A +IG GG ++ ++ + A + V + PDE + V I G Q AQ
Sbjct: 435 IRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVRIIGHFFASQTAQ 493
Query: 404 QLIQEYMNNHKE 415
+ I+E + K+
Sbjct: 494 RKIREIVQQVKQ 505
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 136 (52.9 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGK 130
+P + + +P VG+IIG+KG IK+ A IK+ P PD R+V+I+G
Sbjct: 349 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPDVSERMVIITGP 406
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PEA A R+F ++ EN + K +R VPS+ A +IGK G
Sbjct: 407 --PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKT 456
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +Q + A V ++ D+ P E+E ++
Sbjct: 457 VNELQNLTSAEV-IVPRDQTP---DENEEVI 483
Score = 96 (38.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 30/136 (22%), Positives = 60/136 (44%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++VP VG+IIG++G IK + T++R+ + + SG E +
Sbjct: 122 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI-----HRKEN----SGAAEKPVTIHAT 172
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + + + + + D + A +++L + LIGK+G +K I+ +G
Sbjct: 173 PEGTSEACRMILEIMQKEAD-ETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGT 231
Query: 201 SVRVLSADEAPFYVTE 216
+ + S + Y E
Sbjct: 232 KITISSLQDLSIYNPE 247
Score = 73 (30.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P S A +IG GG ++ ++ + A + V + PDE + V I G Q AQ
Sbjct: 439 IRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVRIIGHFFASQTAQ 497
Query: 404 QLIQEYMNNHKE 415
+ I+E + K+
Sbjct: 498 RKIREIVQQVKQ 509
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 132 (51.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 50/175 (28%), Positives = 82/175 (46%)
Query: 50 SDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRA 109
S SA+P A P P + ++ +P VG+IIG+KG+ IK+ A
Sbjct: 379 SSSAVPPPPSSVTGAAPYSSFMQA-PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASA 437
Query: 110 RIKVLDGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA 166
IK+ P +PD R+V+I+G PEA A R++ ++ EN K
Sbjct: 438 SIKI--APPETPDSKVRMVIITGP--PEAQFK----AQGRIYGKLK--EENFFGPKEEVK 487
Query: 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+R VP++ A +IGK G + +Q + A V V+ D+ P E+++++
Sbjct: 488 LETHIR--VPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENDQVI 536
Score = 105 (42.0 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 41/177 (23%), Positives = 76/177 (42%)
Query: 40 GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
G EN S P+ P AA P +++ P R++VP VG+IIG++G
Sbjct: 162 GPENGRRGGFSSRGQPRQGSPVAAGAPAKQQQVDIP----LRLLVPTQYVGAIIGKEGAT 217
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
I+ + T+++I V ++ IS PE S A + + + +
Sbjct: 218 IRNITKQTQSKIDV-HRKENAGAAEKAISVHSTPEG-CSSACKMILEIMHKEAK------ 269
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
D K + +++L + LIGK+G +K +++++ + + S + Y E
Sbjct: 270 DTKTADEV--PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPE 324
Score = 77 (32.2 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 34/144 (23%), Positives = 67/144 (46%)
Query: 276 SLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRA 335
S A+ I+ TP ++ + + P E++++ G IYG+ ++
Sbjct: 432 SRFASASIKIAPPETPDSKVRMVIITGPP--EAQFKAQG-RIYGK------LKEENF--- 479
Query: 336 SGPIVTQITQT-MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVE 391
GP +T +++P S A +IG GG ++ ++ + A + V + PDE + V+
Sbjct: 480 FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-TPDENDQVIVK 538
Query: 392 IKGTSSQVQLAQQLIQEYMNNHKE 415
I G Q+AQ+ I++ + K+
Sbjct: 539 IIGHFYASQMAQRKIRDILAQVKQ 562
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 136 (52.9 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGK 130
+P + + +P VG+IIG+KG IK+ A IK+ P PD R+V+I+G
Sbjct: 356 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPDVSERMVIITGP 413
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PEA A R+F ++ EN + K +R VPS+ A +IGK G
Sbjct: 414 --PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKT 463
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +Q + A V ++ D+ P E+E ++
Sbjct: 464 VNELQNLTSAEV-IVPRDQTP---DENEEVI 490
Score = 96 (38.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 30/136 (22%), Positives = 60/136 (44%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++VP VG+IIG++G IK + T++R+ + + SG E +
Sbjct: 129 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI-----HRKEN----SGAAEKPVTIHAT 179
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + + + + + D + A +++L + LIGK+G +K I+ +G
Sbjct: 180 PEGTSEACRMILEIMQKEAD-ETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGT 238
Query: 201 SVRVLSADEAPFYVTE 216
+ + S + Y E
Sbjct: 239 KITISSLQDLSIYNPE 254
Score = 73 (30.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P S A +IG GG ++ ++ + A + V + PDE + V I G Q AQ
Sbjct: 446 IRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVRIIGHFFASQTAQ 504
Query: 404 QLIQEYMNNHKE 415
+ I+E + K+
Sbjct: 505 RKIREIVQQVKQ 516
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 136 (52.9 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGK 130
+P + + +P VG+IIG+KG IK+ A IK+ P PD R+V+I+G
Sbjct: 381 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPDVSERMVIITGP 438
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PEA A R+F ++ EN + K +R VPS+ A +IGK G
Sbjct: 439 --PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKT 488
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +Q + A V ++ D+ P E+E ++
Sbjct: 489 VNELQNLTSAEV-IVPRDQTP---DENEEVI 515
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 70/361 (19%), Positives = 142/361 (39%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++VP VG+IIG++G IK + T++R+ + + SG E +
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI-----HRKEN----SGAAEKPVTIHAT 247
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + + + + + D + A +++L + LIGK+G +K I+ +G
Sbjct: 248 PEGTSEACRMILEIMQKEAD-ETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGT 306
Query: 201 SVRVLSADEAPFYVTEDERIVEMQXXXXXXXXXXXXXXXHLRKFLVDQGVLPLFEKTYNA 260
+ + S + Y ER + ++ LR+ + + Y +
Sbjct: 307 KITISSLQDLSIY--NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNTHSGYFS 364
Query: 261 SISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY-- 318
S+ Q + H+ + I + P+ ++ ++ ++ R +G SI
Sbjct: 365 SLYPHHQFGPFPHH---HSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIA 421
Query: 319 -GQDPALST----------IRSSALGRASGPIVTQ----------ITQTMQIPISYAEDI 357
+ P +S + A GR G + + + +++P S A +
Sbjct: 422 PAEGPDVSERMVIITGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRV 481
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQQLIQEYMNNHK 414
IG GG ++ ++ + A + V + PDE + V I G Q AQ+ I+E + K
Sbjct: 482 IGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVRIIGHFFASQTAQRKIREIVQQVK 540
Query: 415 E 415
+
Sbjct: 541 Q 541
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 136 (52.9 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 51/175 (29%), Positives = 82/175 (46%)
Query: 50 SDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRA 109
S +A+P + A P P P + +P VG+IIG+KG+ IK+ A
Sbjct: 379 SSNAVPPPPSSVSGAAPYSSFMP--PEQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASA 436
Query: 110 RIKVLDGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA 166
IK+ P +PD R+V+I+G PEA A R++ ++ EN K
Sbjct: 437 SIKI--APPETPDSKVRMVVITGP--PEAQFK----AQGRIYGKLK--EENFFGPKEEVK 486
Query: 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+R VP++ A +IGK G + +Q + A V V+ D+ P E+E+++
Sbjct: 487 LETHIR--VPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENEQVI 535
Score = 100 (40.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 38/178 (21%), Positives = 76/178 (42%)
Query: 40 GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
G EN P+ P A P +++ P R++VP VG+IIG++G
Sbjct: 162 GPENGRRGGFGARGAPRQGSPVTAGAPVKQQ----PVDIPLRLLVPTQYVGAIIGKEGAT 217
Query: 100 IKKTCEDTRARIKV-LDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND 158
I+ + T+++I V + ++ + I PE AA ++ + + +
Sbjct: 218 IRNITKQTQSKIDVHRKENAGAAEKAISIHST--PEG-----CSAACKMILEI--MQKEA 268
Query: 159 VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
D K + +++L + LIGK+G +K +++++ + + S + Y E
Sbjct: 269 KDTKTADEV--PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPE 324
Score = 76 (31.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 34/144 (23%), Positives = 67/144 (46%)
Query: 276 SLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRA 335
S A+ I+ TP ++ + + P E++++ G IYG+ ++
Sbjct: 431 SRFASASIKIAPPETPDSKVRMVVITGPP--EAQFKAQG-RIYGK------LKEENF--- 478
Query: 336 SGPIVTQITQT-MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVE 391
GP +T +++P S A +IG GG ++ ++ + A + V + PDE + V+
Sbjct: 479 FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-TPDENEQVIVK 537
Query: 392 IKGTSSQVQLAQQLIQEYMNNHKE 415
I G Q+AQ+ I++ + K+
Sbjct: 538 IIGHFYASQMAQRKIRDILAQVKQ 561
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 136 (52.9 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGK 130
+P + + +P VG+IIG+KG IK+ A IK+ P PD R+V+I+G
Sbjct: 424 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPDVSERMVIITGP 481
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PEA A R+F ++ EN + K +R VPS+ A +IGK G
Sbjct: 482 --PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKT 531
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +Q + A V ++ D+ P E+E ++
Sbjct: 532 VNELQNLTSAEV-IVPRDQTP---DENEEVI 558
Score = 96 (38.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 30/136 (22%), Positives = 60/136 (44%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++VP VG+IIG++G IK + T++R+ + + SG E +
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI-----HRKEN----SGAAEKPVTIHAT 247
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + + + + + D + A +++L + LIGK+G +K I+ +G
Sbjct: 248 PEGTSEACRMILEIMQKEAD-ETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGT 306
Query: 201 SVRVLSADEAPFYVTE 216
+ + S + Y E
Sbjct: 307 KITISSLQDLSIYNPE 322
Score = 73 (30.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P S A +IG GG ++ ++ + A + V + PDE + V I G Q AQ
Sbjct: 514 IRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVRIIGHFFASQTAQ 572
Query: 404 QLIQEYMNNHKE 415
+ I+E + K+
Sbjct: 573 RKIREIVQQVKQ 584
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 136 (52.9 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGK 130
+P + + +P VG+IIG+KG IK+ A IK+ P PD R+V+I+G
Sbjct: 424 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPDVSERMVIITGP 481
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PEA A R+F ++ EN + K +R VPS+ A +IGK G
Sbjct: 482 --PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKT 531
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +Q + A V ++ D+ P E+E ++
Sbjct: 532 VNELQNLTSAEV-IVPRDQTP---DENEEVI 558
Score = 96 (38.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 30/136 (22%), Positives = 60/136 (44%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++VP VG+IIG++G IK + T++R+ + + SG E +
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI-----HRKEN----SGAAEKPVTIHAT 247
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + + + + + D + A +++L + LIGK+G +K I+ +G
Sbjct: 248 PEGTSEACRMILEIMQKEAD-ETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGT 306
Query: 201 SVRVLSADEAPFYVTE 216
+ + S + Y E
Sbjct: 307 KITISSLQDLSIYNPE 322
Score = 73 (30.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P S A +IG GG ++ ++ + A + V + PDE + V I G Q AQ
Sbjct: 514 IRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVRIIGHFFASQTAQ 572
Query: 404 QLIQEYMNNHKE 415
+ I+E + K+
Sbjct: 573 RKIREIVQQVKQ 584
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 136 (52.9 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGK 130
+P + + +P VG+IIG+KG IK+ A IK+ P PD R+V+I+G
Sbjct: 430 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPDVSERMVIITGP 487
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PEA A R+F ++ EN + K +R VPS+ A +IGK G
Sbjct: 488 --PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKT 537
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +Q + A V ++ D+ P E+E ++
Sbjct: 538 VNELQNLTSAEV-IVPRDQTP---DENEEVI 564
Score = 96 (38.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 30/136 (22%), Positives = 60/136 (44%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++VP VG+IIG++G IK + T++R+ + + SG E +
Sbjct: 203 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI-----HRKEN----SGAAEKPVTIHAT 253
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + + + + + D + A +++L + LIGK+G +K I+ +G
Sbjct: 254 PEGTSEACRMILEIMQKEAD-ETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGT 312
Query: 201 SVRVLSADEAPFYVTE 216
+ + S + Y E
Sbjct: 313 KITISSLQDLSIYNPE 328
Score = 73 (30.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P S A +IG GG ++ ++ + A + V + PDE + V I G Q AQ
Sbjct: 520 IRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVRIIGHFFASQTAQ 578
Query: 404 QLIQEYMNNHKE 415
+ I+E + K+
Sbjct: 579 RKIREIVQQVKQ 590
>UNIPROTKB|Q7JPS0 [details] [associations]
symbol:Psi "PSI" species:7242 "Drosophila sp." [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=IMP] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA;IMP] [GO:0005685 "U1 snRNP" evidence=IPI]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003729 GO:GO:0006397
GO:GO:0007283 GO:GO:0048025 GO:GO:0000381 InterPro:IPR015096
Pfam:PF09005 PDB:2BN5 PDBsum:2BN5 FlyBase:FBgn0014870 EMBL:S75665
PDB:2BN6 PDBsum:2BN6 ProteinModelPortal:Q7JPS0 SMR:Q7JPS0
InParanoid:Q7JPS0 EvolutionaryTrace:Q7JPS0 Uniprot:Q7JPS0
Length = 796
Score = 96 (38.9 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QESRGLPDEITVEIKGTSSQVQLAQQ 404
T +P S +IG GG +I+ I + SGA + + + P+E + KGT+ QV+ A+Q
Sbjct: 430 TFLVPASKCGIVIGRGGETIKLINQQSGAHTEMDRNASNPPNEKLFKSKGTTDQVEAARQ 489
Query: 405 LIQEYMN 411
+I E +N
Sbjct: 490 MISEKIN 496
Score = 89 (36.4 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 39/150 (26%), Positives = 65/150 (43%)
Query: 72 PGWPGHCVFRMI-VPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISG 129
PG G+ ++ I +P KVG +IG+ G+ IK+ E T A++ ++ DGP + + ISG
Sbjct: 205 PGPSGYPPYQEIMIPGAKVGLVIGKGGDTIKQLQEKTGAKMIIIQDGPNQELIKPLRISG 264
Query: 130 KEEP-EAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA-------FC------SVRLLV 175
+ + E +D + K G + G F S + V
Sbjct: 265 EAQKIEHAKQMVLDLIAQ--KDAQGQQQGGRGGGGGGGGPGMGFNNFNNGNGGESTEVFV 322
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVL 205
P +IGK G +I+ IQ G ++ +
Sbjct: 323 PKIAVGVVIGKGGDMIRKIQTECGCKLQFI 352
Score = 70 (29.7 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP-DRIVLISGKEEPEAPVSPA 140
+ VP + VG +IG+ G++I+K + +++ + G DR +I G +
Sbjct: 320 VFVPKIAVGVVIGKGGDMIRKIQTECGCKLQFIQGKNDEMGDRRCVIQGTRQQVDDAKRT 379
Query: 141 MDAAVRVFKRVSGLPEN 157
+D + + +G+ N
Sbjct: 380 IDGLIENVMQRNGMNRN 396
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 81 (33.6 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
V+++VP++ A +IGK G+ +K+I E SGA V++ + P + ER+V
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVV 221
Score = 77 (32.2 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 29/99 (29%), Positives = 44/99 (44%)
Query: 42 ENTEHT-TESDSALPQSTGPDAAAVPE----EKKWPGWPGHCVFRMIVPVLKVGSIIGRK 96
+N HT D P S A PE ++ G G ++++P GSIIG+
Sbjct: 9 QNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKG 68
Query: 97 GELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G+ I + ++T A IK+ P +R+ LI G E
Sbjct: 69 GQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 107
Score = 61 (26.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 323 ALSTIRSSA-LGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QE 380
A S + +SA LG ++ + +P + I+G GG ++ + +GA I + ++
Sbjct: 401 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 460
Query: 381 SRGLPDEIT--VEIKGTSSQVQLAQQLIQE 408
+P V I GT + Q AQ LI +
Sbjct: 461 GEFVPGTRNRKVTITGTPAATQAAQYLITQ 490
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 81 (33.6 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
V+++VP++ A +IGK G+ +K+I E SGA V++ + P + ER+V
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVV 221
Score = 77 (32.2 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 29/99 (29%), Positives = 44/99 (44%)
Query: 42 ENTEHT-TESDSALPQSTGPDAAAVPE----EKKWPGWPGHCVFRMIVPVLKVGSIIGRK 96
+N HT D P S A PE ++ G G ++++P GSIIG+
Sbjct: 9 QNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKG 68
Query: 97 GELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G+ I + ++T A IK+ P +R+ LI G E
Sbjct: 69 GQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 107
Score = 61 (26.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 323 ALSTIRSSA-LGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QE 380
A S + +SA LG ++ + +P + I+G GG ++ + +GA I + ++
Sbjct: 401 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 460
Query: 381 SRGLPDEIT--VEIKGTSSQVQLAQQLIQE 408
+P V I GT + Q AQ LI +
Sbjct: 461 GEFVPGTRNRKVTITGTPAATQAAQYLITQ 490
>WB|WBGene00016489 [details] [associations]
symbol:C36E6.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096
Pfam:PF09005 GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080802
GeneID:181773 KEGG:cel:CELE_C36E6.1 CTD:181773 HOGENOM:HOG000018892
RefSeq:NP_510825.1 ProteinModelPortal:Q9BLA0 SMR:Q9BLA0
STRING:Q9BLA0 PaxDb:Q9BLA0 PRIDE:Q9BLA0 EnsemblMetazoa:C36E6.1b
UCSC:C36E6.1a WormBase:C36E6.1b InParanoid:Q9BLA0 OMA:IQLIQEN
NextBio:915282 ArrayExpress:Q9BLA0 Uniprot:Q9BLA0
Length = 641
Score = 98 (39.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 32/138 (23%), Positives = 62/138 (44%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKE 131
G P + +P K G+IIG+ GE ++K T +++L D ++ + + I+G
Sbjct: 152 GDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTNCNVQLLQDNNIADTVKPLKITG-- 209
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+P+ V + P + + A A S+++ VP ++G QG I
Sbjct: 210 DPKQ-VEQCRLLVADILACNDDTPASAMMAGNGPVATMSLQVKVPRCTVGAIMGLQGKNI 268
Query: 192 KSIQENSGASVRVLSADE 209
K + + +G ++ L D+
Sbjct: 269 KKLSDETGTKIQFLPDDD 286
Score = 83 (34.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 335 ASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGL-PDEITVEIK 393
A+ P+V M IP S +IG GG +I+ I + SGA + P E T I+
Sbjct: 321 ANAPVVLFY---MVIPASKCGLVIGRGGETIKQINQESGAHCELSRDPNTNPIEKTFVIR 377
Query: 394 GTSSQVQLAQQLIQ 407
G+ +QV+ A+ LI+
Sbjct: 378 GSEAQVEHAKHLIR 391
Score = 83 (34.3 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 39/164 (23%), Positives = 75/164 (45%)
Query: 79 VFRMIVPVLK--VGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGK----EE 132
+ ++ VPV + VG +IGR G ++ + + R++V P S+ R+V I G E
Sbjct: 54 IVKVAVPVPEQCVGLVIGRNGAEVQAISQKSGCRVQVTVQPSSTGFRLVEIYGIPENIER 113
Query: 133 PEAPVSPAMDAAVR---------VFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINL 183
+A +S + R V + G+ VD + ++ + +P+ + +
Sbjct: 114 AKAYISEVVTRGTRQPGPLCQPVVHVQTHGIKSPVVDQ--GDPSKITIEIPIPANKCGAI 171
Query: 184 IGKQGSLIKSIQENSGASVRVLS----ADEA-PFYVTEDERIVE 222
IGK G ++ ++ + +V++L AD P +T D + VE
Sbjct: 172 IGKGGEQMRKLRSWTNCNVQLLQDNNIADTVKPLKITGDPKQVE 215
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 81 (33.6 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
V+++VP++ A +IGK G+ +K+I E SGA V++ + P + ER+V
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVV 221
Score = 76 (31.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 29/99 (29%), Positives = 44/99 (44%)
Query: 42 ENTEHT-TESDSALPQSTGPDAAAVPE----EKKWPGWPGHCVFRMIVPVLKVGSIIGRK 96
+N HT D P S A PE ++ G G ++++P GSIIG+
Sbjct: 9 QNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKG 68
Query: 97 GELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G+ I + ++T A IK+ P +R+ LI G E
Sbjct: 69 GQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE 107
Score = 61 (26.5 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 323 ALSTIRSSA-LGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QE 380
A S + +SA LG ++ + +P + I+G GG ++ + +GA I + ++
Sbjct: 401 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 460
Query: 381 SRGLPDEIT--VEIKGTSSQVQLAQQLIQE 408
+P V I GT + Q AQ LI +
Sbjct: 461 GEFVPGTRNRKVTITGTPAATQAAQYLITQ 490
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 81 (33.6 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
V+++VP++ A +IGK G+ +K+I E SGA V++ + P + ER+V
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVV 221
Score = 76 (31.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 29/99 (29%), Positives = 44/99 (44%)
Query: 42 ENTEHT-TESDSALPQSTGPDAAAVPE----EKKWPGWPGHCVFRMIVPVLKVGSIIGRK 96
+N HT D P S A PE ++ G G ++++P GSIIG+
Sbjct: 9 QNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKG 68
Query: 97 GELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G+ I + ++T A IK+ P +R+ LI G E
Sbjct: 69 GQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE 107
Score = 61 (26.5 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 323 ALSTIRSSA-LGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QE 380
A S + +SA LG ++ + +P + I+G GG ++ + +GA I + ++
Sbjct: 401 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 460
Query: 381 SRGLPDEIT--VEIKGTSSQVQLAQQLIQE 408
+P V I GT + Q AQ LI +
Sbjct: 461 GEFVPGTRNRKVTITGTPAATQAAQYLITQ 490
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 50/175 (28%), Positives = 82/175 (46%)
Query: 50 SDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRA 109
S SA+P A P P + ++ +P VG+IIG+KG+ IK+ A
Sbjct: 379 SSSAVPPPPSSVTGAAPYSSFMQA-PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASA 437
Query: 110 RIKVLDGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA 166
IK+ P +PD R+V+I+G PEA A R++ ++ EN K
Sbjct: 438 SIKI--APPETPDSKVRMVVITGP--PEAQFK----AQGRIYGKLK--EENFFGPKEEVK 487
Query: 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+R VP++ A +IGK G + +Q + A V V+ D+ P E+++++
Sbjct: 488 LETHIR--VPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENDQVI 536
Score = 102 (41.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 40/177 (22%), Positives = 75/177 (42%)
Query: 40 GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
G EN P+ P AA P +++ P R++VP VG+IIG++G
Sbjct: 162 GPENGRRGGFGSRGQPRQGSPVAAGAPAKQQ----PVDIPLRLLVPTQYVGAIIGKEGAT 217
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
I+ + T+++I V ++ IS PE S A + + + +
Sbjct: 218 IRNITKQTQSKIDV-HRKENAGAAEKAISVHSTPEG-CSSACKMILEIMHKEAK------ 269
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
D K + +++L + LIGK+G +K +++++ + + S + Y E
Sbjct: 270 DTKTADEV--PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPE 324
Score = 76 (31.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 34/144 (23%), Positives = 67/144 (46%)
Query: 276 SLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRA 335
S A+ I+ TP ++ + + P E++++ G IYG+ ++
Sbjct: 432 SRFASASIKIAPPETPDSKVRMVVITGPP--EAQFKAQG-RIYGK------LKEENF--- 479
Query: 336 SGPIVTQITQT-MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVE 391
GP +T +++P S A +IG GG ++ ++ + A + V + PDE + V+
Sbjct: 480 FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-TPDENDQVIVK 538
Query: 392 IKGTSSQVQLAQQLIQEYMNNHKE 415
I G Q+AQ+ I++ + K+
Sbjct: 539 IIGHFYASQMAQRKIRDILAQVKQ 562
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 43/135 (31%), Positives = 68/135 (50%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS--SPDRIVLISGKEEPEAP 136
V + +P VG++IG+KG+ IK+ A IK+ P S P+R+V+I+G PEA
Sbjct: 274 VVYLFIPTPAVGALIGKKGQHIKELAHFAGASIKIA-APESPDEPERMVIITGP--PEAQ 330
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A R++ ++ EN AK ++ VPST A +IGK G + +Q
Sbjct: 331 FK----AQGRIYGKLK--EENFFTAKEEVKLEAHIK--VPSTAAGRVIGKGGKTVNELQN 382
Query: 197 NSGASVRVLSADEAP 211
+ A V ++ D+ P
Sbjct: 383 LTSAEV-IVPRDQTP 396
Score = 96 (38.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 32/146 (21%), Positives = 67/146 (45%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV--LDGPVSSPDRIVLISGKEEPEAPVS 138
R++VP VG+IIG++G IK + T++++ + + ++ I + S KE
Sbjct: 63 RILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKENAGATEKAITIHSSKE------- 115
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A R+ + ND +++L ++ LIGK+G +K I++++
Sbjct: 116 -GCSQACRMILEIMEKEANDTKIVEE----VPLKILAHNSLVGRLIGKEGRNLKKIEQDT 170
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQ 224
G + + + + Y ER + ++
Sbjct: 171 GTKITISALQDLTVY--NQERTISVR 194
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P + A +IG GG ++ ++ + A + V + PDE + V+I G Q AQ
Sbjct: 359 IKVPSTAAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENDDVFVKIIGHFFASQTAQ 417
Query: 404 QLIQEYMNNHKE 415
+ I+E + K+
Sbjct: 418 RKIREIVQQVKQ 429
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 132 (51.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 50/175 (28%), Positives = 82/175 (46%)
Query: 50 SDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRA 109
S SA+P A P P + ++ +P VG+IIG+KG+ IK+ A
Sbjct: 379 SSSAVPPPPSSVTGAAPYSSFMQA-PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASA 437
Query: 110 RIKVLDGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA 166
IK+ P +PD R+V+I+G PEA A R++ ++ EN K
Sbjct: 438 SIKI--APPETPDSKVRMVIITGP--PEAQFK----AQGRIYGKLK--EENFFGPKEEVK 487
Query: 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+R VP++ A +IGK G + +Q + A V V+ D+ P E+++++
Sbjct: 488 LETHIR--VPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENDQVI 536
Score = 101 (40.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 40/177 (22%), Positives = 75/177 (42%)
Query: 40 GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
G EN P+ P AA P +++ P R++VP VG+IIG++G
Sbjct: 162 GPENGRRGGFGSRGQPRQGSPVAAGAPAKQQQVDIP----LRLLVPTQYVGAIIGKEGAT 217
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
I+ + T+++I V ++ IS PE S A + + + +
Sbjct: 218 IRNITKQTQSKIDV-HRKENAGAAEKAISVHSTPEG-CSSACKMILEIMHKEAK------ 269
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
D K + +++L + LIGK+G +K +++++ + + S + Y E
Sbjct: 270 DTKTADEV--PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPE 324
Score = 77 (32.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 34/144 (23%), Positives = 67/144 (46%)
Query: 276 SLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRA 335
S A+ I+ TP ++ + + P E++++ G IYG+ ++
Sbjct: 432 SRFASASIKIAPPETPDSKVRMVIITGPP--EAQFKAQG-RIYGK------LKEENF--- 479
Query: 336 SGPIVTQITQT-MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVE 391
GP +T +++P S A +IG GG ++ ++ + A + V + PDE + V+
Sbjct: 480 FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-TPDENDQVIVK 538
Query: 392 IKGTSSQVQLAQQLIQEYMNNHKE 415
I G Q+AQ+ I++ + K+
Sbjct: 539 IIGHFYASQMAQRKIRDILAQVKQ 562
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 132 (51.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 50/175 (28%), Positives = 82/175 (46%)
Query: 50 SDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRA 109
S SA+P A P P + ++ +P VG+IIG+KG+ IK+ A
Sbjct: 379 SSSAVPPPPSSVTGAAPYSSFMQA-PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASA 437
Query: 110 RIKVLDGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA 166
IK+ P +PD R+V+I+G PEA A R++ ++ EN K
Sbjct: 438 SIKI--APPETPDSKVRMVIITGP--PEAQFK----AQGRIYGKLK--EENFFGPKEEVK 487
Query: 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+R VP++ A +IGK G + +Q + A V V+ D+ P E+++++
Sbjct: 488 LETHIR--VPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENDQVI 536
Score = 101 (40.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 40/177 (22%), Positives = 75/177 (42%)
Query: 40 GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
G EN P+ P AA P +++ P R++VP VG+IIG++G
Sbjct: 162 GPENGRRGGFGSRGQPRQGSPVAAGAPAKQQQVDIP----LRLLVPTQYVGAIIGKEGAT 217
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
I+ + T+++I V ++ IS PE S A + + + +
Sbjct: 218 IRNITKQTQSKIDV-HRKENAGAAEKAISVHSTPEG-CSSACKMILEIMHKEAK------ 269
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
D K + +++L + LIGK+G +K +++++ + + S + Y E
Sbjct: 270 DTKTADEV--PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPE 324
Score = 77 (32.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 34/144 (23%), Positives = 67/144 (46%)
Query: 276 SLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRA 335
S A+ I+ TP ++ + + P E++++ G IYG+ ++
Sbjct: 432 SRFASASIKIAPPETPDSKVRMVIITGPP--EAQFKAQG-RIYGK------LKEENF--- 479
Query: 336 SGPIVTQITQT-MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVE 391
GP +T +++P S A +IG GG ++ ++ + A + V + PDE + V+
Sbjct: 480 FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-TPDENDQVIVK 538
Query: 392 IKGTSSQVQLAQQLIQEYMNNHKE 415
I G Q+AQ+ I++ + K+
Sbjct: 539 IIGHFYASQMAQRKIRDILAQVKQ 562
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 132 (51.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 50/175 (28%), Positives = 82/175 (46%)
Query: 50 SDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRA 109
S SA+P A P P + ++ +P VG+IIG+KG+ IK+ A
Sbjct: 379 SSSAVPPPPSSVTGAAPYSSFMQA-PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASA 437
Query: 110 RIKVLDGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA 166
IK+ P +PD R+V+I+G PEA A R++ ++ EN K
Sbjct: 438 SIKI--APPETPDSKVRMVIITGP--PEAQFK----AQGRIYGKLK--EENFFGPKEEVK 487
Query: 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+R VP++ A +IGK G + +Q + A V V+ D+ P E+++++
Sbjct: 488 LETHIR--VPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENDQVI 536
Score = 101 (40.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 40/177 (22%), Positives = 75/177 (42%)
Query: 40 GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
G EN P+ P AA P +++ P R++VP VG+IIG++G
Sbjct: 162 GPENGRRGGFGSRGQPRQGSPVAAGAPAKQQQVDIP----LRLLVPTQYVGAIIGKEGAT 217
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
I+ + T+++I V ++ IS PE S A + + + +
Sbjct: 218 IRNITKQTQSKIDV-HRKENAGAAEKAISVHSTPEG-CSSACKMILEIMHKEAK------ 269
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
D K + +++L + LIGK+G +K +++++ + + S + Y E
Sbjct: 270 DTKTADEV--PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPE 324
Score = 77 (32.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 34/144 (23%), Positives = 67/144 (46%)
Query: 276 SLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRA 335
S A+ I+ TP ++ + + P E++++ G IYG+ ++
Sbjct: 432 SRFASASIKIAPPETPDSKVRMVIITGPP--EAQFKAQG-RIYGK------LKEENF--- 479
Query: 336 SGPIVTQITQT-MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVE 391
GP +T +++P S A +IG GG ++ ++ + A + V + PDE + V+
Sbjct: 480 FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-TPDENDQVIVK 538
Query: 392 IKGTSSQVQLAQQLIQEYMNNHKE 415
I G Q+AQ+ I++ + K+
Sbjct: 539 IIGHFYASQMAQRKIRDILAQVKQ 562
>WB|WBGene00007534 [details] [associations]
symbol:C12D8.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0016246
GO:GO:0003723 EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 128 (50.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 42/147 (28%), Positives = 68/147 (46%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEEPEAPVSPA 140
++VP VG IIG++G+ IK+ +T +I+ D S+P+R +I G + +
Sbjct: 253 VVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRDQIYRATER 312
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ V+ G N A S A + + VP+ + +IGK G IK I SGA
Sbjct: 313 ITELVKKSTMQQGGGGNVAGAMVSNEA-STFYMSVPAAKCGLVIGKGGETIKQINSESGA 371
Query: 201 SVRVL-----SADEAPFYVTEDERIVE 222
+ +ADE F + +R +E
Sbjct: 372 HCELSRDPTGNADEKVFVIKGGKRAIE 398
Score = 90 (36.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 34/147 (23%), Positives = 64/147 (43%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEEPEAPVSPAMD 142
+P VG +IGR G I+ R+++ D SS R+V + G ++
Sbjct: 76 IPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSN-------VE 128
Query: 143 AAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASV 202
A + V +N A ++ + +P + +IGK G I+ +QE SG +
Sbjct: 129 TAKHLINEVVARSQNPRPQYGFPRAQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKM 188
Query: 203 RVLS-----ADEA-PFYVTEDERIVEM 223
++ +D++ P +T D + +E+
Sbjct: 189 ILVQDNQSVSDQSKPLRITGDPQKIEL 215
Score = 89 (36.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 325 STIRSSALGRASGPIVTQITQT--MQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QES 381
ST++ G +G +V+ T M +P + +IG GG +I+ I SGA + ++
Sbjct: 320 STMQQGGGGNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDP 379
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLIQ 407
G DE IKG ++ A+ LI+
Sbjct: 380 TGNADEKVFVIKGGKRAIEHAKHLIR 405
Score = 82 (33.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 37/148 (25%), Positives = 64/148 (43%)
Query: 73 GWP-GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGP-VSSPDRIVLISG 129
G+P + +P + G IIG+ G+ I++ E + + I V D VS + + I+G
Sbjct: 149 GFPRAQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSKPLRITG 208
Query: 130 KEEPEAPVSPAMDAAVRVFKRV------SGLPENDVDAKASGAAFCSVRLLVPSTQAINL 183
+P+ + A + SGL + A G A ++VP + +
Sbjct: 209 --DPQK-IELAKQLVAEILNSGGDGNGGSGLQMHH--AGGGGGASARGEVVVPRSSVGII 263
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEAP 211
IGKQG IK + +G ++ D+ P
Sbjct: 264 IGKQGDTIKRLAMETGTKIQ-FKPDDDP 290
>UNIPROTKB|Q17936 [details] [associations]
symbol:C12D8.1 "Protein C12D8.1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0016246 GO:GO:0003723
EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 128 (50.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 42/147 (28%), Positives = 68/147 (46%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEEPEAPVSPA 140
++VP VG IIG++G+ IK+ +T +I+ D S+P+R +I G + +
Sbjct: 253 VVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRDQIYRATER 312
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ V+ G N A S A + + VP+ + +IGK G IK I SGA
Sbjct: 313 ITELVKKSTMQQGGGGNVAGAMVSNEA-STFYMSVPAAKCGLVIGKGGETIKQINSESGA 371
Query: 201 SVRVL-----SADEAPFYVTEDERIVE 222
+ +ADE F + +R +E
Sbjct: 372 HCELSRDPTGNADEKVFVIKGGKRAIE 398
Score = 90 (36.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 34/147 (23%), Positives = 64/147 (43%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEEPEAPVSPAMD 142
+P VG +IGR G I+ R+++ D SS R+V + G ++
Sbjct: 76 IPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSN-------VE 128
Query: 143 AAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASV 202
A + V +N A ++ + +P + +IGK G I+ +QE SG +
Sbjct: 129 TAKHLINEVVARSQNPRPQYGFPRAQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKM 188
Query: 203 RVLS-----ADEA-PFYVTEDERIVEM 223
++ +D++ P +T D + +E+
Sbjct: 189 ILVQDNQSVSDQSKPLRITGDPQKIEL 215
Score = 89 (36.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 325 STIRSSALGRASGPIVTQITQT--MQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QES 381
ST++ G +G +V+ T M +P + +IG GG +I+ I SGA + ++
Sbjct: 320 STMQQGGGGNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDP 379
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLIQ 407
G DE IKG ++ A+ LI+
Sbjct: 380 TGNADEKVFVIKGGKRAIEHAKHLIR 405
Score = 82 (33.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 37/148 (25%), Positives = 64/148 (43%)
Query: 73 GWP-GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGP-VSSPDRIVLISG 129
G+P + +P + G IIG+ G+ I++ E + + I V D VS + + I+G
Sbjct: 149 GFPRAQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSKPLRITG 208
Query: 130 KEEPEAPVSPAMDAAVRVFKRV------SGLPENDVDAKASGAAFCSVRLLVPSTQAINL 183
+P+ + A + SGL + A G A ++VP + +
Sbjct: 209 --DPQK-IELAKQLVAEILNSGGDGNGGSGLQMHH--AGGGGGASARGEVVVPRSSVGII 263
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEAP 211
IGKQG IK + +G ++ D+ P
Sbjct: 264 IGKQGDTIKRLAMETGTKIQ-FKPDDDP 290
>WB|WBGene00022738 [details] [associations]
symbol:ZK418.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080150
HOGENOM:HOG000018892 PIR:T27855 RefSeq:NP_001023000.1
ProteinModelPortal:Q23487 SMR:Q23487 STRING:Q23487 PaxDb:Q23487
PRIDE:Q23487 EnsemblMetazoa:ZK418.9a GeneID:175989
KEGG:cel:CELE_ZK418.9 UCSC:ZK418.9b.2 CTD:175989 WormBase:ZK418.9a
InParanoid:Q23487 OMA:NCTIEGP NextBio:890626 ArrayExpress:Q23487
Uniprot:Q23487
Length = 557
Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 44/145 (30%), Positives = 71/145 (48%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEEPEAPVSPA 140
+IVP L G IIG+ GE+IK+ +T +I+ D +S DRI +I G + +
Sbjct: 244 VIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGTRDQIYRATER 303
Query: 141 MDAAV-RVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+ V R K +G P++ A + VP+ + +IGK G IK I+ +G
Sbjct: 304 ITEIVNRAIKN-NGAPQDRGSAGTVLPGQSIFYMHVPAGKCGLVIGKGGENIKQIERETG 362
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQ 224
A+ + A E EDE++ E++
Sbjct: 363 ATCGLAPAAEQK---NEDEKVFEIK 384
>WB|WBGene00013347 [details] [associations]
symbol:Y59A8B.10 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 eggNOG:NOG258094
KO:K14944 EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10
CTD:180183 HSSP:P51513 RefSeq:NP_001256769.1
ProteinModelPortal:Q9GRY9 SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9
MINT:MINT-1109012 STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9
EnsemblMetazoa:Y59A8B.10a UCSC:Y59A8B.10 WormBase:Y59A8B.10a
HOGENOM:HOG000017831 InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344
ArrayExpress:Q9GRY9 Uniprot:Q9GRY9
Length = 413
Score = 130 (50.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 46/185 (24%), Positives = 87/185 (47%)
Query: 45 EHTTESDSALPQSTGPDAAAVPEEKK--WPGWP--G-HCVFRMIVPVLKVGSIIGRKGEL 99
E T +S + DA+ P KK + G G H ++++P VG+IIG+ GE
Sbjct: 4 EFTEDSKTQQGVKRTQDASDGPANKKAHFGGEEEGGDHLSIKILIPSNAVGAIIGKGGEA 63
Query: 100 IKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPE 156
++ D R+++ + P +RI L+ G+ V ++ +R ++ +
Sbjct: 64 MRNLKNDNNCRVQMSKNSETYPGTSERICLVKGRLNNIMAVIESIQDKIR--EKCADQGG 121
Query: 157 NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
+D + + +++++P+T A +IGK G+ IK I+E G ++V + T
Sbjct: 122 SDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTS 181
Query: 217 DERIV 221
ER+V
Sbjct: 182 LERVV 186
>UNIPROTKB|Q9GRY9 [details] [associations]
symbol:Y59A8B.10 "Protein Y59A8B.10, isoform a"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00650000093048 eggNOG:NOG258094 KO:K14944
EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10 CTD:180183
HSSP:P51513 RefSeq:NP_001256769.1 ProteinModelPortal:Q9GRY9
SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9 MINT:MINT-1109012
STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9 EnsemblMetazoa:Y59A8B.10a
UCSC:Y59A8B.10 WormBase:Y59A8B.10a HOGENOM:HOG000017831
InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344 ArrayExpress:Q9GRY9
Uniprot:Q9GRY9
Length = 413
Score = 130 (50.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 46/185 (24%), Positives = 87/185 (47%)
Query: 45 EHTTESDSALPQSTGPDAAAVPEEKK--WPGWP--G-HCVFRMIVPVLKVGSIIGRKGEL 99
E T +S + DA+ P KK + G G H ++++P VG+IIG+ GE
Sbjct: 4 EFTEDSKTQQGVKRTQDASDGPANKKAHFGGEEEGGDHLSIKILIPSNAVGAIIGKGGEA 63
Query: 100 IKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPE 156
++ D R+++ + P +RI L+ G+ V ++ +R ++ +
Sbjct: 64 MRNLKNDNNCRVQMSKNSETYPGTSERICLVKGRLNNIMAVIESIQDKIR--EKCADQGG 121
Query: 157 NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
+D + + +++++P+T A +IGK G+ IK I+E G ++V + T
Sbjct: 122 SDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTS 181
Query: 217 DERIV 221
ER+V
Sbjct: 182 LERVV 186
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 132 (51.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 45/149 (30%), Positives = 74/149 (49%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL--DGPVSSPDRIVLISGKEE 132
P V + +P VG+IIG+KG+ IK+ A IK+ +GP + +R+V+I+G
Sbjct: 398 PEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGP-DATERMVIITGP-- 454
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
PEA A R+F ++ EN + K ++ VPS A +IGK G +
Sbjct: 455 PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIK--VPSFAAGRVIGKGGKTVN 506
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIV 221
+Q + A V ++ D+ P E+E ++
Sbjct: 507 ELQNLTSAEV-IVPRDQTP---DENEEVI 531
Score = 105 (42.0 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 34/161 (21%), Positives = 72/161 (44%)
Query: 56 QSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD 115
Q + P ++ P++ +P RM+VP VG+IIG++G IK + T++++ +
Sbjct: 152 QGSSPGGSSQPKQLDFP-------LRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDI-- 202
Query: 116 GPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLV 175
R E+P + + + + + + + D S A +++L
Sbjct: 203 ------HRKENAGAAEKP-ITIHATPEGCSEACRMILDIMQKEADETKS-AEEIPLKILA 254
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
++ LIGK+G +K I++++G + + + Y E
Sbjct: 255 HNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLTIYNPE 295
Score = 68 (29.0 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P A +IG GG ++ ++ + A + V + PDE + V+I G Q AQ
Sbjct: 487 IKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVKIIGHFFASQTAQ 545
Query: 404 QLIQEYMNNHKE 415
+ I+E + K+
Sbjct: 546 RKIREIVQQVKQ 557
Score = 61 (26.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 26/87 (29%), Positives = 39/87 (44%)
Query: 338 PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPD--EITVEIKGT 395
P+ Q + IP IIG G I+ + R +GA I + + G PD E V I G
Sbjct: 396 PLPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEG-PDATERMVIITGP 454
Query: 396 -----SSQVQLAQQLIQEYMNNHKESI 417
+Q ++ +L +E N KE +
Sbjct: 455 PEAQFKAQGRIFGKLKEENFFNPKEEV 481
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 132 (51.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 46/151 (30%), Positives = 72/151 (47%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGK 130
+P + +P VG+IIG+KG IK+ A IK+ P PD R+V+I+G
Sbjct: 417 YPEQETVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPDVSERMVIITGP 474
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PEA A R+F ++ EN + K +R VPS+ A +IGK G
Sbjct: 475 --PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKT 524
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +Q + A V ++ D+ P E+E ++
Sbjct: 525 VNELQNLTSAEV-IVPRDQTP---DENEEVI 551
Score = 98 (39.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 37/178 (20%), Positives = 73/178 (41%)
Query: 39 IGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGE 98
I E + A Q GP +++ + +P R++VP VG+IIG++G
Sbjct: 155 IPDEEVSSPSPPHRAREQGHGPGSSSQARQIDFP-------LRILVPTQFVGAIIGKEGL 207
Query: 99 LIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND 158
IK + T++R+ + + SG E + + + + + + +
Sbjct: 208 TIKNITKQTQSRVDI-----HRKEN----SGAAEKPVTIHATPEGTSEACRMILEIMQKE 258
Query: 159 VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
D + A +++L + LIGK+G +K I+ +G + + S + Y E
Sbjct: 259 AD-ETKLAEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPE 315
Score = 73 (30.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P S A +IG GG ++ ++ + A + V + PDE + V I G Q AQ
Sbjct: 507 IRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVRIIGHFFASQTAQ 565
Query: 404 QLIQEYMNNHKE 415
+ I+E + K+
Sbjct: 566 RKIREIVQQVKQ 577
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 132 (51.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 46/151 (30%), Positives = 72/151 (47%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGK 130
+P + +P VG+IIG+KG IK+ A IK+ P PD R+V+I+G
Sbjct: 417 YPEQETVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPDVSERMVIITGP 474
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PEA A R+F ++ EN + K +R VPS+ A +IGK G
Sbjct: 475 --PEAQFK----AQGRIFGKLK--EENFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKT 524
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ +Q + A V ++ D+ P E+E ++
Sbjct: 525 VNELQNLTSAEV-IVPRDQTP---DENEEVI 551
Score = 97 (39.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 37/178 (20%), Positives = 73/178 (41%)
Query: 39 IGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGE 98
I E + A Q GP +++ + +P R++VP VG+IIG++G
Sbjct: 155 IPDEELSSPSPPHRAREQGHGPGSSSQARQIDFP-------LRILVPTQFVGAIIGKEGL 207
Query: 99 LIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND 158
IK + T++R+ + + SG E + + + + + + +
Sbjct: 208 TIKNITKQTQSRVDI-----HRKEN----SGAAEKPVTIHATPEGTSEACRMILEIMQKE 258
Query: 159 VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
D + A +++L + LIGK+G +K I+ +G + + S + Y E
Sbjct: 259 AD-ETKLAEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPE 315
Score = 74 (31.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P S A +IG GG ++ ++ + A + V + PDE + V I G Q AQ
Sbjct: 507 IRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQ-TPDENEEVIVRIIGHFFASQTAQ 565
Query: 404 QLIQEYMNNHKESITSSYGQ 423
+ I+E + K+ Y Q
Sbjct: 566 RKIREIVQQVKQQ-AQKYPQ 584
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 129 (50.5 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 50/175 (28%), Positives = 82/175 (46%)
Query: 50 SDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRA 109
S SA+P A P P + ++ +P VG+IIG+KG+ IK+ A
Sbjct: 379 SSSAVPPPPSSVTGAAPYGSFMQA-PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASA 437
Query: 110 RIKVLDGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA 166
IK+ P +PD R+V+I+G PEA A R++ ++ EN K
Sbjct: 438 SIKI--APPETPDSKVRMVVITGP--PEAQFK----AQGRIYGKLK--EENFFGPKEEVK 487
Query: 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+R VP++ A +IGK G + +Q + A V V+ D+ P E+++++
Sbjct: 488 LETHIR--VPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENDQVI 536
Score = 101 (40.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 40/177 (22%), Positives = 75/177 (42%)
Query: 40 GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
G EN P+ P AA P +++ P R++VP VG+IIG++G
Sbjct: 162 GPENGRRGGFGSRGQPRQGSPVAAGAPAKQQQVDIP----LRLLVPTQYVGAIIGKEGAT 217
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
I+ + T+++I V ++ IS PE S A + + + +
Sbjct: 218 IRNITKQTQSKIDV-HRKENAGAAEKAISVHSTPEG-CSSACKMILEIMHKEAK------ 269
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
D K + +++L + LIGK+G +K +++++ + + S + Y E
Sbjct: 270 DTKTADEV--PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPE 324
Score = 76 (31.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 34/144 (23%), Positives = 67/144 (46%)
Query: 276 SLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRA 335
S A+ I+ TP ++ + + P E++++ G IYG+ ++
Sbjct: 432 SRFASASIKIAPPETPDSKVRMVVITGPP--EAQFKAQG-RIYGK------LKEENF--- 479
Query: 336 SGPIVTQITQT-MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVE 391
GP +T +++P S A +IG GG ++ ++ + A + V + PDE + V+
Sbjct: 480 FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-TPDENDQVIVK 538
Query: 392 IKGTSSQVQLAQQLIQEYMNNHKE 415
I G Q+AQ+ I++ + K+
Sbjct: 539 IIGHFYASQMAQRKIRDILAQVKQ 562
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 91 (37.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 145 VRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+R+ + + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA V+V
Sbjct: 16 IRLLMHGKDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 75
Query: 205 LSADEAP 211
+ D P
Sbjct: 76 -AGDMLP 81
Score = 82 (33.9 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEEPEAPVSP 139
R++VP + GS+IG+ G IK+ E T A+++V D +S +R + I+G P++ +
Sbjct: 43 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI--PQSIIEC 100
Query: 140 AMDAAVRVFKRVSGLPENDV 159
V + + +S P V
Sbjct: 101 VKQICVVMLETLSQSPPKGV 120
Score = 77 (32.2 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
+ IP IIG G I IR+ SGA I + G D V I G+++ + LAQ L
Sbjct: 235 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGSAASISLAQYL 293
Query: 406 IQEYMNNHKESITSS 420
I +++ + SS
Sbjct: 294 INVRLSSETGGMGSS 308
>UNIPROTKB|C9IZV9 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946687 ProteinModelPortal:C9IZV9 SMR:C9IZV9 STRING:C9IZV9
Ensembl:ENST00000483411 ArrayExpress:C9IZV9 Bgee:C9IZV9
Uniprot:C9IZV9
Length = 75
Score = 104 (41.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG 129
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG 67
>UNIPROTKB|C9J5V4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946082 ProteinModelPortal:C9J5V4 SMR:C9J5V4 STRING:C9J5V4
Ensembl:ENST00000497653 HOGENOM:HOG000213901 ArrayExpress:C9J5V4
Bgee:C9J5V4 Uniprot:C9J5V4
Length = 107
Score = 104 (41.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG 129
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG 67
>UNIPROTKB|C9J7A9 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945892 ProteinModelPortal:C9J7A9 SMR:C9J7A9 STRING:C9J7A9
Ensembl:ENST00000490063 ArrayExpress:C9J7A9 Bgee:C9J7A9
Uniprot:C9J7A9
Length = 86
Score = 104 (41.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG 129
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG 67
>UNIPROTKB|C9JSA6 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945164 ProteinModelPortal:C9JSA6 SMR:C9JSA6 STRING:C9JSA6
Ensembl:ENST00000489595 ArrayExpress:C9JSA6 Bgee:C9JSA6
Uniprot:C9JSA6
Length = 92
Score = 104 (41.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG 129
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG 67
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 128 (50.1 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 45/142 (31%), Positives = 72/142 (50%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL--DGPVSSPDRIVLISGKEEPEAPVSP 139
+ +P L VG+IIG++G+ IK+ A IK+ DG + + R+V+ISG PEA
Sbjct: 413 LFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADG-IDAKQRMVIISGP--PEAQFK- 468
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A R+F ++ EN K ++ VPS A +IGK G + +Q +
Sbjct: 469 ---AQGRIFGKLK--EENFFGPKEEVKLEAHIK--VPSFAAGRVIGKGGKTVNELQNLTS 521
Query: 200 ASVRVLSADEAPFYVTEDERIV 221
A V V+ D+ P E++++V
Sbjct: 522 AEV-VVPRDQTP---DENDQVV 539
Score = 85 (35.0 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 32/159 (20%), Positives = 66/159 (41%)
Query: 59 GPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV-LDGP 117
GP P P R++VP VG+IIG++G I+ + T ++I +
Sbjct: 176 GPPRQGSPSLGARPKLQSDVPLRLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKEN 235
Query: 118 VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPS 177
+ ++ + + PE +A R + + + +D K + +++L +
Sbjct: 236 AGAAEKPITVHST--PEG-----CSSACRNIMEI--MQKEAIDTKITEEI--PLKILAHN 284
Query: 178 TQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
LIGK+G +K I++++ + + + Y E
Sbjct: 285 NFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPE 323
Score = 78 (32.5 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLAQ 403
+++P A +IG GG ++ ++ + A + V + PDE + V+I G QLAQ
Sbjct: 495 IKVPSFAAGRVIGKGGKTVNELQNLTSAEVVVPRDQ-TPDENDQVVVKITGHFYASQLAQ 553
Query: 404 QLIQEYMN 411
+ IQE ++
Sbjct: 554 RKIQEIIS 561
>UNIPROTKB|F8VTZ0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01020805
ProteinModelPortal:F8VTZ0 SMR:F8VTZ0 Ensembl:ENST00000550192
ArrayExpress:F8VTZ0 Bgee:F8VTZ0 Uniprot:F8VTZ0
Length = 64
Score = 103 (41.3 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 21/49 (42%), Positives = 36/49 (73%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG 129
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG 63
>RGD|1591989 [details] [associations]
symbol:LOC367191 "similar to Poly(rC)-binding protein 2
(Alpha-CP2) (Putative heterogeneous nuclear ribonucleoprotein X)
(hnRNP X) (CTBP) (CBP)" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591989 GO:GO:0003723 IPI:IPI00555167
Ensembl:ENSRNOT00000037460 OMA:KARITIS Uniprot:D3ZTH3
Length = 107
Score = 103 (41.3 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 30/98 (30%), Positives = 56/98 (57%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P RI+ ++G P + A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPKRIITLAG---PTNAIFKA 71
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPST 178
A+ + K + + ++ A+ + RL+VP++
Sbjct: 72 F--AMIIDKLEEDISSSMTNSTAARRPPVTSRLVVPAS 107
>FB|FBgn0014870 [details] [associations]
symbol:Psi "P-element somatic inhibitor" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685
"U1 snRNP" evidence=IPI] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0006397 "mRNA processing"
evidence=IDA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003729
GO:GO:0006397 GO:GO:0007283 GO:GO:0048025 GO:GO:0000381
EMBL:AL031863 InterPro:IPR015096 Pfam:PF09005 HSSP:Q96AE4
FlyBase:FBgn0014870 PIR:T13690 ProteinModelPortal:O96828 SMR:O96828
STRING:O96828 PRIDE:O96828 InParanoid:O96828 ArrayExpress:O96828
Bgee:O96828 Uniprot:O96828
Length = 806
Score = 89 (36.4 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 39/150 (26%), Positives = 65/150 (43%)
Query: 72 PGWPGHCVFRMI-VPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISG 129
PG G+ ++ I +P KVG +IG+ G+ IK+ E T A++ ++ DGP + + ISG
Sbjct: 218 PGPSGYPPYQEIMIPGAKVGLVIGKGGDTIKQLQEKTGAKMIIIQDGPNQELIKPLRISG 277
Query: 130 KEEP-EAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA-------FC------SVRLLV 175
+ + E +D + K G + G F S + V
Sbjct: 278 EAQKIEHAKQMVLDLIAQ--KDAQGQQQGGRGGGGGGGGPGMGFNNFNNGNGGESTEVFV 335
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVL 205
P +IGK G +I+ IQ G ++ +
Sbjct: 336 PKIAVGVVIGKGGDMIRKIQTECGCKLQFI 365
Score = 87 (35.7 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 357 IIGVGGTSIENIRRTSGAIITV-QESRGLPDEITVEIKGTSSQVQLAQQLIQEYMN 411
+IG GG +I+ I + SGA + + + P+E + KGT+ QV+ A+Q+I E +N
Sbjct: 450 VIGRGGETIKLINQQSGAHTEMDRNASNPPNEKLFKSKGTTDQVEAARQMISEKIN 505
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 123 (48.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 45/174 (25%), Positives = 79/174 (45%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P P+A + G G ++++P GSIIG+ G+ I + ++T A IK+
Sbjct: 12 PLEAPPEAGSTKRTNT--GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLS 69
Query: 115 DGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVF-KRVSGLPENDV---DAKASGAA 167
P +R+ LI G E V + +R + V+ + +
Sbjct: 70 KSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDR 129
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
V+++VP++ A +IGK G+ +K+I E SGA V++ + P + ER+V
Sbjct: 130 IKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVV 180
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 126 (49.4 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 49/170 (28%), Positives = 78/170 (45%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P + AAA + P + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 387 PAVSVASAAAAASYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKI- 445
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P PD R+V+I+G PEA A R++ ++ EN K +
Sbjct: 446 -APAEGPDAKLRMVIITGP--PEAQFK----AQGRIYGKLK--EENFFGPKEEVKLEAHI 496
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ VPS A +IGK G + +Q + A V V+ D+ P E++++V
Sbjct: 497 K--VPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTP---DENDQVV 540
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 126 (49.4 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 52/179 (29%), Positives = 80/179 (44%)
Query: 50 SDSALPQ-STG-PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDT 107
S S +P S G P + + P + +P L VG+IIG++G+ IK+
Sbjct: 389 SSSGMPPPSVGVPSPTSSTSYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFA 448
Query: 108 RARIKVLDGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
A IK+ P PD R+V+I+G PEA A R++ ++ EN K
Sbjct: 449 GASIKI--APAEGPDAKLRMVIITGP--PEAQFK----AQGRIYGKLK--EENFFGPKEE 498
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
+ VPS A +IGK G + +Q + A V V+ D+ P DE +V++
Sbjct: 499 --VKLETHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTPD--ENDEVVVKI 552
Score = 87 (35.7 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 34/159 (21%), Positives = 67/159 (42%)
Query: 59 GPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV-LDGP 117
GP P P RM+VP VG+IIG++G I+ + T+++I +
Sbjct: 187 GPARQGSPGAAARPKPQTEVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKEN 246
Query: 118 VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPS 177
+ ++ + I PE AA ++ + + + D K + +++L +
Sbjct: 247 AGAAEKPITIHST--PEG-----CSAACKIIMEI--MQKEAQDTKFTEEI--PLKILAHN 295
Query: 178 TQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
LIGK+G +K I++++ + + + Y E
Sbjct: 296 NFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPE 334
Score = 79 (32.9 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 347 MQIPISYAED-IIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLA 402
+++P SYA +IG GG ++ ++ + A + V + PDE + V+I G QLA
Sbjct: 505 IKVP-SYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQ-TPDENDEVVVKITGHFYASQLA 562
Query: 403 QQLIQEYM 410
Q+ IQE +
Sbjct: 563 QRKIQEIL 570
>UNIPROTKB|I3LRF8 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:FP312938
Ensembl:ENSSSCT00000030310 Uniprot:I3LRF8
Length = 265
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 42/132 (31%), Positives = 69/132 (52%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G +
Sbjct: 47 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPTDAIFKAFAM 104
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK-SIQENSG 199
+ RVSGL E + A G + R++ ++G QG L ++ ++G
Sbjct: 105 IAYKFEEVSRVSGLCE--IAENAFGV--WTQRVITLGVTVGCVLG-QGPLCPPGLKGSTG 159
Query: 200 ASVRVLSADEAP 211
A V+V + D P
Sbjct: 160 AQVQV-AGDMLP 170
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 52/178 (29%), Positives = 83/178 (46%)
Query: 55 PQSTG--PDAAAVPE---EKKWPGW---PGHCVFRMIVPVLKVGSIIGRKGELIKKTCED 106
P S+G P +A V +P + P + +P L VG+IIG++G+ IK+
Sbjct: 387 PSSSGMPPPSAGVSSPTTSASYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRF 446
Query: 107 TRARIKVLDGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKA 163
A IK+ P PD R+V+I+G PEA A R++ ++ EN K
Sbjct: 447 AGASIKI--APAEGPDAKLRMVIITGP--PEAQFK----AQGRIYGKLK--EENFFGPKE 496
Query: 164 SGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
++ VPS A +IGK G + +Q + A V V+ D+ P E++++V
Sbjct: 497 EVKLEAHIK--VPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTP---DENDQVV 548
Score = 89 (36.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 34/159 (21%), Positives = 67/159 (42%)
Query: 59 GPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV-LDGP 117
GP P P RM+VP VG+IIG++G I+ + T+++I +
Sbjct: 186 GPARQGSPGAAARPKPQSEVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKEN 245
Query: 118 VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPS 177
+ ++ + I PE AA ++ + + + D K + +++L +
Sbjct: 246 AGAAEKPITIHST--PEG-----CSAACKIIMEI--MQKEAQDTKFTEEI--PLKILAHN 294
Query: 178 TQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
LIGK+G +K I++++ + + + Y E
Sbjct: 295 NFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPE 333
Score = 79 (32.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 347 MQIPISYAED-IIGVGGTSIENIRRTSGAIITVQESRGLPDE---ITVEIKGTSSQVQLA 402
+++P SYA +IG GG ++ ++ + A + V + PDE + V+I G QLA
Sbjct: 504 IKVP-SYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQ-TPDENDQVVVKITGHFYASQLA 561
Query: 403 QQLIQEYM 410
Q+ IQE +
Sbjct: 562 QRKIQEIL 569
>UNIPROTKB|Q9GZT1 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IDA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IDA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=IDA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007050 "cell
cycle arrest" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0008630
GO:GO:0006977 EMBL:CH471055 GO:GO:0007050 GO:GO:0003723
EMBL:AC115284 HOGENOM:HOG000182823 HOVERGEN:HBG053520
UniGene:Hs.20930 HGNC:HGNC:8652 NextBio:62848 EMBL:AF257770
EMBL:AF257772 IPI:IPI00006997 HSSP:Q9UNW9 SMR:Q9GZT1 STRING:Q9GZT1
Ensembl:ENST00000395014 UCSC:uc003dcc.2 Uniprot:Q9GZT1
Length = 424
Score = 88 (36.0 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 109 ARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA-AVRVFKRVSGLPENDVDAKASGAA 167
ARI + +G S P+RI I+G A V A+ A ++ + + P N +
Sbjct: 15 ARITISEG--SCPERITTITGST---AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPV- 68
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
++RL++P++Q +LIGK G+ IK I+E G
Sbjct: 69 --TLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
Score = 76 (31.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 36/118 (30%), Positives = 51/118 (43%)
Query: 314 GISIYGQ----DPA----LSTIRSSALGRASGPIVTQI---TQTMQIPISYAEDIIG--V 360
G S+ GQ PA L + S A+ A+ +V + TQT D+IG +
Sbjct: 219 GFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVI 278
Query: 361 G--GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
G G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 279 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 336
>GENEDB_PFALCIPARUM|PFF0250w [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 60/214 (28%), Positives = 96/214 (44%)
Query: 61 DAAAVPEEK-----KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD 115
D +VP+EK K+ CV R ++ V IIG+ G IK+ T A ++D
Sbjct: 359 DNYSVPKEKNLLLHKYGKEVSPCVVRFVLDVETTAWIIGKAGCHIKEIRSVTGAGAVIVD 418
Query: 116 GP-----VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
P V + DRI+ +SG E + A+ VR + E +++
Sbjct: 419 APDNIENVKTCDRILTLSGSAENKFN---ALKLIVRQMEE----REKNINNP-------- 463
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQXXXXXX 230
+R+LVP A LIG++GS+IK I E SG+ ++V E+ E+E++V +
Sbjct: 464 MRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKES-----ENEKLVLITGSPEAK 518
Query: 231 XXXXXXXXXHLRKF----LVDQG-VLPLFEKTYN 259
L ++ + +G V+PL E YN
Sbjct: 519 ILASVLVLQKLEEYENPAIAREGLVIPLNEIYYN 552
>UNIPROTKB|C6KSP9 [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 60/214 (28%), Positives = 96/214 (44%)
Query: 61 DAAAVPEEK-----KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD 115
D +VP+EK K+ CV R ++ V IIG+ G IK+ T A ++D
Sbjct: 359 DNYSVPKEKNLLLHKYGKEVSPCVVRFVLDVETTAWIIGKAGCHIKEIRSVTGAGAVIVD 418
Query: 116 GP-----VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
P V + DRI+ +SG E + A+ VR + E +++
Sbjct: 419 APDNIENVKTCDRILTLSGSAENKFN---ALKLIVRQMEE----REKNINNP-------- 463
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQXXXXXX 230
+R+LVP A LIG++GS+IK I E SG+ ++V E+ E+E++V +
Sbjct: 464 MRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKES-----ENEKLVLITGSPEAK 518
Query: 231 XXXXXXXXXHLRKF----LVDQG-VLPLFEKTYN 259
L ++ + +G V+PL E YN
Sbjct: 519 ILASVLVLQKLEEYENPAIAREGLVIPLNEIYYN 552
>WB|WBGene00019692 [details] [associations]
symbol:M01A10.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0006898 GO:GO:0003723 eggNOG:NOG300923
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:FO081508 RefSeq:NP_491627.2 ProteinModelPortal:P91393
SMR:P91393 STRING:P91393 PaxDb:P91393 EnsemblMetazoa:M01A10.1
GeneID:187350 KEGG:cel:CELE_M01A10.1 UCSC:M01A10.1 CTD:187350
WormBase:M01A10.1 HOGENOM:HOG000018892 InParanoid:P91393
OMA:KARIMET NextBio:934978 Uniprot:P91393
Length = 586
Score = 92 (37.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 37/156 (23%), Positives = 70/156 (44%)
Query: 57 STGPDAAAVPEEKKWPGWPGHCVFRMIVPVL--KVGSIIGRKGELIKKTCEDTRAR-IKV 113
S P +VP+ + P +I+P+ K G+IIG+KGE ++K T I +
Sbjct: 126 SQEPLPCSVPQFQPIPAVSNSSKVTIIIPIPANKCGAIIGKKGEQMRKLRSWTNCDFILI 185
Query: 114 LDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRL 173
+ ++ + + I+G +P+ V A + P + + AA S+++
Sbjct: 186 QENNIADSVKPLQITG--QPKE-VEHAKALVADILDGFDECPPAGMAGNSPVAAM-SLQV 241
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADE 209
VP + ++G QGS IK I + ++ + D+
Sbjct: 242 KVPRSTVGAIMGLQGSNIKKISNETETKIQFMPDDD 277
Score = 74 (31.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPD-EITVEIKGTSSQVQLAQQL 405
M IP S +IG GG +I I + SGA + + E I+G+ +QV+ A+ L
Sbjct: 321 MLIPASKCGLVIGRGGETIRQINKESGAYCEMSRDPSISAIEKQFVIRGSETQVEHAKHL 380
Query: 406 IQ 407
I+
Sbjct: 381 IR 382
>UNIPROTKB|D4ACH3 [details] [associations]
symbol:D4ACH3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OrthoDB:EOG46WZ8K IPI:IPI00464805 Ensembl:ENSRNOT00000055302
Uniprot:D4ACH3
Length = 282
Score = 115 (45.5 bits), Expect = 0.00046, P = 0.00046
Identities = 43/140 (30%), Positives = 72/140 (51%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---------PT 65
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFC------SVRLLV--PSTQAINLIGKQGSLIK 192
+A + F + E D + C ++RL+ PS +A N+I G K
Sbjct: 66 -NAIFKAFAMIIDKLEEDKICSLKVRSICYNKKVLTIRLIFFQPSLKANNIIYISGCREK 124
Query: 193 S-IQENSGASVRVLSADEAP 211
I +++GA V+V + D P
Sbjct: 125 EVILKSTGAQVQV-AGDMLP 143
>TAIR|locus:2012713 [details] [associations]
symbol:AT1G33680 "AT1G33680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084 SMART:SM00322
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0003723
eggNOG:NOG300923 KO:K13210 UniGene:At.39892 UniGene:At.71035
HOGENOM:HOG000242545 EMBL:AK229850 EMBL:AK229909 EMBL:AK230055
IPI:IPI00786006 RefSeq:NP_174629.3 ProteinModelPortal:Q0WLY0
SMR:Q0WLY0 STRING:Q0WLY0 PaxDb:Q0WLY0 PRIDE:Q0WLY0
EnsemblPlants:AT1G33680.1 GeneID:840259 KEGG:ath:AT1G33680
TAIR:At1g33680 InParanoid:Q0WLY0 OMA:PSYGSTP PhylomeDB:Q0WLY0
ProtClustDB:CLSN2690290 Genevestigator:Q0WLY0 Uniprot:Q0WLY0
Length = 763
Score = 86 (35.3 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 27/89 (30%), Positives = 42/89 (47%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIIT-VQESRG-LPDEITVEIKGTSSQVQLAQQ 404
+++P IIG GG +I+N++ S A I + ++ G E TV I G Q+ +A
Sbjct: 324 IKVPSDKVGVIIGRGGETIKNMQTKSRARIQLIPQNEGDASKERTVRISGDKRQIDIATA 383
Query: 405 LIQEYMNNHKESITSSYGQIDTGYRPSYP 433
LI++ M S G Y+P P
Sbjct: 384 LIKDVMYQDGRPSPYSGGFNQQAYQPRGP 412
Score = 81 (33.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 27/84 (32%), Positives = 41/84 (48%)
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSG-LPENDVDAKASGAAFCSVRLLVPSTQAINLIGK 186
+G E E S + D K V+G +VD S R+ VPS++ LIGK
Sbjct: 194 AGGESKEVNGSVSHDEIGDESKEVNGGSTHKEVDDTQSTTR----RIDVPSSKVGTLIGK 249
Query: 187 QGSLIKSIQENSGASVRVLSADEA 210
G +++ +Q NSGA +++ EA
Sbjct: 250 GGEMVRYLQVNSGAKIQIRRDAEA 273
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 119 (46.9 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 56/195 (28%), Positives = 91/195 (46%)
Query: 45 EHTTESDSALPQSTGP--DAAAV---PEEKKWPGW--PGHCVFRMIVPVLKVGSIIGRKG 97
E TE+ S +TG + AA+ P G+ G ++++P GSIIG+ G
Sbjct: 23 ETPTEASSTKRTNTGDRCNQAAIHDPPFSSDIVGFHEEGEYFLKVLIPSYAAGSIIGKGG 82
Query: 98 ELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVFKR---- 150
+ I + ++T A IK+ P +R+ LI G E V + VR +
Sbjct: 83 QTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNNVHDFIAEKVREMPQSAQK 142
Query: 151 ---VSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLS 206
VS L P+ V+ A +L+VP++ A +IGK G+ +K++ E SGA V++
Sbjct: 143 TEPVSILQPQTTVNPDRVKQA----KLVVPNSTAGLIIGKGGATVKAVMEQSGAWVQL-- 196
Query: 207 ADEAPFYVTEDERIV 221
+ P + ER+V
Sbjct: 197 -SQKPDGINLQERVV 210
Score = 39 (18.8 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQE 380
+P + I+G GG ++ + +GA I + +
Sbjct: 423 VPENLVGAILGKGGKTLVEYQELTGARIQISK 454
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.360 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 466 409 0.00079 118 3 11 23 0.47 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 198
No. of states in DFA: 601 (64 KB)
Total size of DFA: 219 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.15u 0.10s 36.25t Elapsed: 00:00:02
Total cpu time: 36.18u 0.10s 36.28t Elapsed: 00:00:02
Start: Fri May 10 04:10:42 2013 End: Fri May 10 04:10:44 2013
WARNINGS ISSUED: 1