BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012307
(466 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225445949|ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g18375 isoform 1 [Vitis
vinifera]
Length = 466
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 312/461 (67%), Positives = 363/461 (78%), Gaps = 25/461 (5%)
Query: 1 MATAETTD----NGSINLPEPDPQPETATT-----ESPTTESEAPPTIGSENTEHTTESD 51
MAT TT+ NG+ P DP+ E + T + T ESE P SEN E S+
Sbjct: 1 MATTGTTEPAPVNGAAQSPGSDPKTELSETPLSASNAATAESEQAP---SENLE----SE 53
Query: 52 SALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARI 111
S P T +A A EKKWPGWPG CVFR+IVPVLKVGSIIGRKGELIKK CE+TRARI
Sbjct: 54 STAPPET--EAPAPASEKKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARI 111
Query: 112 KVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA---F 168
+VLDG V + DRIVLISG+EEPEAP+SPAMDA +RVFKRV+GL E++ D KA GAA F
Sbjct: 112 RVLDGAVGTSDRIVLISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGKAYGAAGVAF 171
Query: 169 CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAA 228
CS+RLLV STQAINLIGKQGSLIKSIQE++GASVRVLS DE PFY DERIVE+QGEA
Sbjct: 172 CSIRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADERIVELQGEAL 231
Query: 229 KVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTE 288
KV KALEAVVGHLRKFLVD VLPLFE+TYNA+ISQ+RQ +TWADKS LH +Q+ + ++
Sbjct: 232 KVQKALEAVVGHLRKFLVDHSVLPLFERTYNATISQDRQSDTWADKSLLHGTSQTGMGSD 291
Query: 289 YTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQ 348
Y+ +RESL+L+RE Q+E SG+ +YGQ+ LS IRSS LGRA PIVTQI QTMQ
Sbjct: 292 YSLPAKRESLYLDRETQMEH----SGLPMYGQEHGLSGIRSSGLGRAGAPIVTQIAQTMQ 347
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQE 408
IP+SYAEDIIG+GG +I IRRTSGAI+TVQESRGLPDEITVEIKGTSSQVQ AQQLIQE
Sbjct: 348 IPLSYAEDIIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEIKGTSSQVQTAQQLIQE 407
Query: 409 YMNNHKESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQP 449
+++NHKE + SSYG++D+G R SY QLGN+SY SSSLS+QP
Sbjct: 408 FISNHKEPVPSSYGKMDSGLRSSYSQLGNTSYSSSSLSSQP 448
>gi|356549146|ref|XP_003542958.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 436
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 308/469 (65%), Positives = 356/469 (75%), Gaps = 36/469 (7%)
Query: 1 MATAETTDNGSINLPEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGP 60
MAT + NG + +P A E P+T ++ PP P
Sbjct: 1 MATLDQIQNG---VSSDNP----AAAEPPSTTADVPP----------------------P 31
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
DAAA EK+WPGWPGHCVFR+IVPVLKVGSIIGRKGELIKKTCE+T+ARI+VLDG V +
Sbjct: 32 DAAA---EKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGT 88
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQA 180
DRIVLISGKE+ EAP+SPAMDA +RVFKRVSG E D KAS AFCSVRLLV STQA
Sbjct: 89 SDRIVLISGKEDLEAPLSPAMDAVIRVFKRVSGFSEIDAKNKASAVAFCSVRLLVASTQA 148
Query: 181 INLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGH 240
INLIGKQGSLIKSIQEN+GASVRVLS DE PFY DERIVE+QGEA KVLKALEAVVGH
Sbjct: 149 INLIGKQGSLIKSIQENTGASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGH 208
Query: 241 LRKFLVDQGVLPLFEKTYNASISQERQVE-TWADKSSLHAATQSAISTEYTPSTRRESLF 299
LRKFLVD VLPLFEKTYNA+ISQERQ + TW DK SLH+A+Q +I T+ ST+R+SLF
Sbjct: 209 LRKFLVDNSVLPLFEKTYNATISQERQADTTWVDKPSLHSASQPSIVTDIPLSTKRDSLF 268
Query: 300 LEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASG-PIVTQITQTMQIPISYAEDII 358
+RE QL+S S +S+YGQD +LS +RSSAL R S PIVT + QTMQIP+SYAEDII
Sbjct: 269 ADRESQLDSLLPPSTMSMYGQDSSLSGLRSSALSRPSAPPIVTTVIQTMQIPLSYAEDII 328
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESIT 418
G+ GT+IE IRRTSGAI+TVQESR +PDEI VEIKGTSSQVQ AQQLIQE ++NH E +
Sbjct: 329 GIQGTNIEYIRRTSGAILTVQESR-VPDEIIVEIKGTSSQVQTAQQLIQEVISNHTEPVA 387
Query: 419 SSYGQIDTGYRPSYPQLG-NSSYPSSSLSTQPYGGYGSSGVGGYTSYRL 466
S+Y ++DTG R SYPQLG +S SS S GGYGSS +GGY+++RL
Sbjct: 388 SNYSRLDTGLRSSYPQLGSSSYSSSSLSSQPYSGGYGSSALGGYSTFRL 436
>gi|356556240|ref|XP_003546434.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 442
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 302/469 (64%), Positives = 358/469 (76%), Gaps = 30/469 (6%)
Query: 1 MATAETTDNGSINLPEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGP 60
MATAE NG+ PD + PPT TES++A
Sbjct: 1 MATAEPLQNGTAEPLLPD-----------NVSAAQPPT--------ETESNAAA------ 35
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
AA+ P EK+WPGWPG CVFR+IVPV KVGSIIGRKGELIKK CE+TR+RI+VLD P+ +
Sbjct: 36 -AASTPPEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGT 94
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAK--ASGAAFCSVRLLVPST 178
PDRIVL+SGKEEPEA +SPAMDA VR+FKRVSGL E D + K A+G AFCS+RLLV ST
Sbjct: 95 PDRIVLVSGKEEPEAALSPAMDAVVRIFKRVSGLSETDAENKESAAGLAFCSIRLLVAST 154
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
QAINLIGKQGSLIKSIQEN+ ASVRVLS DE Y T DERIVE+QGEA KVLKALEAVV
Sbjct: 155 QAINLIGKQGSLIKSIQENTSASVRVLSGDEVQSYATVDERIVEIQGEALKVLKALEAVV 214
Query: 239 GHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESL 298
GHLRKFLVD VLPLFEKTYNAS SQ+RQ ETW+DKS LH ++++I + ST+R+S+
Sbjct: 215 GHLRKFLVDHSVLPLFEKTYNASTSQDRQAETWSDKSLLHTTSRTSIFADIPYSTKRDSV 274
Query: 299 FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
+RE QL+S S +S+YGQD +LS +RSSALGR PIVT + QTMQIP+SYAEDII
Sbjct: 275 LADRESQLDSFLPSSTMSLYGQDSSLSGVRSSALGRVGAPIVTTVIQTMQIPLSYAEDII 334
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESIT 418
G+ GT+IE IRRTSGAI+TVQESR +PDEI VEIKGTSS+VQ AQQLIQ+ +++HKE IT
Sbjct: 335 GIQGTNIEYIRRTSGAILTVQESR-VPDEIVVEIKGTSSEVQTAQQLIQDVISSHKEPIT 393
Query: 419 SSYGQIDTGYRPSYPQLGNS-SYPSSSLSTQPYGGYGSSGVGGYTSYRL 466
SSYG++D G R SY QLG + P SSLS+QPY GYG+SG+G Y+++RL
Sbjct: 394 SSYGRLDAGPRSSYSQLGTTSRLPPSSLSSQPYTGYGASGLGDYSTFRL 442
>gi|449463577|ref|XP_004149510.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 3-like
[Cucumis sativus]
Length = 468
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 296/442 (66%), Positives = 345/442 (78%), Gaps = 14/442 (3%)
Query: 1 MATAETTDNGSIN-LPEP--DPQPETATTESPTTESEAPPTIGSENTEHTTE---SDSAL 54
MAT TT+NGS + +P P P A E +TE+ + + + + SDSA
Sbjct: 1 MATNTTTENGSTDAIPNPLSSTLPSLAAAEPDSTEAGDDDSDSDPSNQDYSSVPPSDSAA 60
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
+ P P +KKWPGWPG CVFR+IVPV+KVGSIIGRKG+LIKK CE+TRARI+VL
Sbjct: 61 HE---PSNHTGPSDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVL 117
Query: 115 DGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
DG V +PDR+VLISGKEE E+P+SPAMDA +RVFKRVSGL EN+ +AKAS FCS+RLL
Sbjct: 118 DGAVGTPDRVVLISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKAS---FCSIRLL 174
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
V STQAINLIGKQGSLIKSIQE++GASVRVLS DE PFY DER+VE+QGE+ KVLKAL
Sbjct: 175 VASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKAL 234
Query: 235 EAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTR 294
E VVGHLRKFLVD VLPLFEK++N SQ+RQ ETWADKSSL A+QS IS EY PST+
Sbjct: 235 EGVVGHLRKFLVDHSVLPLFEKSFNTPASQDRQTETWADKSSLLTASQSIISAEYAPSTK 294
Query: 295 RESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYA 354
RESLFL+RE +S SGIS+YGQD L TIRSS +GR+ GPIVTQ+TQTMQIP+SYA
Sbjct: 295 RESLFLDREAHFDSHISSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYA 354
Query: 355 EDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
EDIIGVGGT+I IRR SGAI+T+QESRGLPDEITVEIKGTSSQVQ+AQQLIQE +N K
Sbjct: 355 EDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVNAPK 414
Query: 415 ESIT-SSYGQIDTGYRPSYPQL 435
E +T SSYG++ G R SY QL
Sbjct: 415 EPVTSSSYGRL-XGLRSSYSQL 435
>gi|356562072|ref|XP_003549298.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 436
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 280/379 (73%), Positives = 317/379 (83%), Gaps = 5/379 (1%)
Query: 60 PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS 119
PD AA EK+WPGWPGHCVFR+IVPVLKVGSIIGRKGELIKKTCE+T+ARI+VLDG V
Sbjct: 30 PDPAAA--EKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVG 87
Query: 120 SPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQ 179
+ DRIVLISGKEEPEAP+SPAM+A +RVFKRVSG E D + KAS AFCSVRLLV STQ
Sbjct: 88 TSDRIVLISGKEEPEAPLSPAMNAVIRVFKRVSGFSEIDAENKASAVAFCSVRLLVASTQ 147
Query: 180 AINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVG 239
AINLIGKQGSLIKSIQEN+GASVRVLS DE PFY DERIVE+QGEA KVLKALEAVVG
Sbjct: 148 AINLIGKQGSLIKSIQENTGASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVG 207
Query: 240 HLRKFLVDQGVLPLFEKTYNASISQERQVE-TWADKSSLHAATQSAISTEYTPSTRRESL 298
HLRKFLVD VLPLFEKTYNA+ISQE Q + TW DK SLH+A+Q +I T+ ST+R+SL
Sbjct: 208 HLRKFLVDNSVLPLFEKTYNATISQEHQADTTWVDKPSLHSASQPSIVTDLPLSTKRDSL 267
Query: 299 FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASG-PIVTQITQTMQIPISYAEDI 357
F +RE QL+S S +SIYGQD +LS +RSSAL R S PIVT + QTMQIP+SYAEDI
Sbjct: 268 FADRESQLDSLLPPSTMSIYGQDSSLSGLRSSALSRPSAPPIVTTVIQTMQIPLSYAEDI 327
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
IG+ GT+IE IR TSGAI+TVQES +PDEI VEIKGTSSQVQ AQQLIQE ++NHKE +
Sbjct: 328 IGIQGTNIEYIRCTSGAILTVQES-PVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPL 386
Query: 418 TSSYGQIDTGYRPSYPQLG 436
S+Y ++DTG R SYPQLG
Sbjct: 387 ASNYSRLDTGLRSSYPQLG 405
>gi|255554418|ref|XP_002518248.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223542595|gb|EEF44134.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 451
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 278/399 (69%), Positives = 332/399 (83%), Gaps = 2/399 (0%)
Query: 70 KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG 129
WPGWPG CVFR+IVPVLKVGSIIGRKG+LIKK C++TRARI+VLD P+ +PDR+VLISG
Sbjct: 53 NWPGWPGDCVFRLIVPVLKVGSIIGRKGDLIKKMCDETRARIRVLDAPIGTPDRVVLISG 112
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
KE+ EAP+SPAMDA +RVFKRVSGLPE N + A+G AF S+RLLV STQAINLIGKQG
Sbjct: 113 KEDVEAPLSPAMDAVIRVFKRVSGLPEGNAQELGAAGIAFSSIRLLVASTQAINLIGKQG 172
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
S+IKSIQE++GASVRVLS +E PFYV DERIV++QGEA KVL+ALEA+VGHLRKFLVD
Sbjct: 173 SIIKSIQESTGASVRVLSENEVPFYVATDERIVDLQGEAMKVLEALEAIVGHLRKFLVDH 232
Query: 249 GVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLES 308
VLPLFEK YNA IS +RQ ETW+D+SS H +Q I +Y S +R++L LERE ES
Sbjct: 233 SVLPLFEKNYNALISLDRQAETWSDRSSFHTTSQGRIDIDYPLSGKRDALLLERETPFES 292
Query: 309 RYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENI 368
+ LS IS+YGQDPA+S++RSS R+S PIVTQ+TQTMQ+PISYAE+IIG+ G +IE I
Sbjct: 293 QVPLSRISLYGQDPAISSVRSSVFNRSSVPIVTQVTQTMQVPISYAEEIIGIRGNNIEYI 352
Query: 369 RRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH-KESITSSYGQIDTG 427
RRTSGAIITV ESRGLPDEI VEIKGT+S+VQ+AQQLIQE+++NH KE +TSSY + DTG
Sbjct: 353 RRTSGAIITVNESRGLPDEIIVEIKGTASEVQMAQQLIQEFLSNHNKEPVTSSYSKYDTG 412
Query: 428 YRPSYPQLGNSSYPSSSLSTQPYGGYGSSGVGGYTSYRL 466
+ Y QL NS Y SSSLS + YG YGSS +GGY+S+RL
Sbjct: 413 LKSVYSQLDNSPYTSSSLSAKSYGEYGSSSLGGYSSFRL 451
>gi|356530338|ref|XP_003533739.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 274/404 (67%), Positives = 330/404 (81%), Gaps = 4/404 (0%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P EK+WPGWPG CVFR+IVPV KVGSIIGRKGELIKK CE+TR+RI+VLD P+ +PDRIV
Sbjct: 41 PPEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIV 100
Query: 126 LISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAK--ASGAAFCSVRLLVPSTQAINL 183
L+SGKE+PEA +SPAMDA VR+FKRVSG E D + + A+G AF S+RLLV STQAINL
Sbjct: 101 LVSGKEDPEAALSPAMDAVVRIFKRVSGFSETDAENQESAAGLAFSSIRLLVASTQAINL 160
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
IGKQGSLIKSIQEN+ ASVRVLS DE FY T +ERIVE+QGEA KVLKALEAVVGHLRK
Sbjct: 161 IGKQGSLIKSIQENTSASVRVLSGDEVQFYATANERIVEIQGEALKVLKALEAVVGHLRK 220
Query: 244 FLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE 303
FLVD VLPLFEKTYNA SQ+RQ ETW+DKS LH +++++I + ST+R+S+ +RE
Sbjct: 221 FLVDHSVLPLFEKTYNAPTSQDRQAETWSDKSLLHTSSRTSIFADIPLSTKRDSVLADRE 280
Query: 304 PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGT 363
QL+ S +S+YGQD +LS + SSALGR PIVT + QTMQIP+SYAEDIIG+ GT
Sbjct: 281 SQLDLFLPSSTMSLYGQDSSLSGVHSSALGRVGAPIVTTVIQTMQIPLSYAEDIIGIQGT 340
Query: 364 SIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQ 423
+IE IRRTSGAI+TVQESR +PDEI VEIKGTSS+VQ AQQLIQ+ +++HKE +TSSYG+
Sbjct: 341 NIEYIRRTSGAILTVQESR-VPDEIVVEIKGTSSEVQTAQQLIQDVISSHKEPVTSSYGR 399
Query: 424 IDTGYRPSYPQLGNS-SYPSSSLSTQPYGGYGSSGVGGYTSYRL 466
+D R SY LG + P SSLS+QPY GYG+SG+G Y+++RL
Sbjct: 400 LDAVPRSSYSHLGTTSRLPPSSLSSQPYTGYGASGLGDYSTFRL 443
>gi|297803502|ref|XP_002869635.1| hypothetical protein ARALYDRAFT_492216 [Arabidopsis lyrata subsp.
lyrata]
gi|297315471|gb|EFH45894.1| hypothetical protein ARALYDRAFT_492216 [Arabidopsis lyrata subsp.
lyrata]
Length = 495
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 273/462 (59%), Positives = 331/462 (71%), Gaps = 45/462 (9%)
Query: 49 ESDSALPQSTGPDAAAVPE----------EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGE 98
E+ A P+ PD+ A E ++WPGWPG CVFRMIVPV KVG+IIGRKG+
Sbjct: 35 ENSGAFPELNQPDSLAAAETTAPDTNDFAAERWPGWPGDCVFRMIVPVSKVGAIIGRKGD 94
Query: 99 LIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND 158
IKK CE+TRARIKVLDGPV++PDRIVLISGKEEPEA +SPAMDA +RVF+RVSGLP+ND
Sbjct: 95 FIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDND 154
Query: 159 VD-AKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTED 217
D + +G+AFCSVRLLV STQAINLIGKQGSLIKSI ENSGASVR+LS +E PFY +D
Sbjct: 155 DDDVQNAGSAFCSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQD 214
Query: 218 ERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWAD-KSS 276
ERIV++QGEA K+LKALEA+VGHLRKFLVD V+PLFEK Y A +SQ RQ E A+ KSS
Sbjct: 215 ERIVDLQGEALKILKALEAIVGHLRKFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKSS 274
Query: 277 LHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRAS 336
LH + + I +++ RR+ LFL+R+ ++ESR + +G+SIY QDP LS S L R S
Sbjct: 275 LHTISSNVIEPDFSLLARRDPLFLDRDARVESRVQPTGVSIYSQDPVLSARHSPGLARVS 334
Query: 337 GPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTS 396
VTQ++QTMQIP SYAEDIIGV G +I IRR SGA IT++ES PD+ITVEIKGTS
Sbjct: 335 SAFVTQVSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTS 393
Query: 397 SQVQLAQQLIQEYMNNHKE--SITSSYGQIDTGYRPSYP--------------------- 433
SQVQ A+QLIQE+++NHKE S++ Y +IDTGY P+YP
Sbjct: 394 SQVQTAEQLIQEFISNHKEPVSVSGGYARIDTGYVPAYPPQLSNRQEPLSNSYMGTETVQ 453
Query: 434 -------QLGNSSYPSSSLSTQPYGG--YGSSGVGGYTSYRL 466
QLG S + SL+ Q YG +S VGGY+SY L
Sbjct: 454 YRPTAYSQLGGPSTYTPSLNGQTYGSEYRPASDVGGYSSYNL 495
>gi|15236094|ref|NP_194330.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|4538929|emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|7269451|emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|15810499|gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|20466386|gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|21280915|gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|332659742|gb|AEE85142.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 495
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 284/503 (56%), Positives = 345/503 (68%), Gaps = 61/503 (12%)
Query: 8 DNGSINLPEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPE 67
+NGSINLPE E+ P G E+ A P+ PD+ A E
Sbjct: 10 NNGSINLPE--------------NENLIP--AGFSAAALLDENSGAFPELNQPDSLAAAE 53
Query: 68 ----------EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP 117
E++WPGWPG CVFRMIVPV KVG+IIGRKG+ IKK CE+TRARIKVLDGP
Sbjct: 54 TTFPDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGP 113
Query: 118 VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEN-DVDAKASGAAFCSVRLLVP 176
V++PDRIVLISGKEEPEA +SPAMDA +RVF+RVSGLP+N D D + +G+ F SVRLLV
Sbjct: 114 VNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVA 173
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
STQAINLIGKQGSLIKSI ENSGASVR+LS +E PFY +DERIV++QGEA K+LKALEA
Sbjct: 174 STQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEA 233
Query: 237 VVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWAD-KSSLHAATQSAISTEYTPSTRR 295
+VGHLR+FLVD V+PLFEK Y A +SQ RQ E A+ KSSLH + + + +++ RR
Sbjct: 234 IVGHLRRFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNLMEPDFSLLARR 293
Query: 296 ESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAE 355
E LFLER+ +++SR + SG+SIY QDP LS S L R S VTQ++QTMQIP SYAE
Sbjct: 294 EPLFLERDSRVDSRVQPSGVSIYSQDPVLSARHSPGLARVSSAFVTQVSQTMQIPFSYAE 353
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
DIIGV G +I IRR SGA IT++ES PD+ITVEIKGT+SQVQ A+QLIQE++ NHKE
Sbjct: 354 DIIGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTTSQVQTAEQLIQEFIINHKE 412
Query: 416 --SITSSYGQIDTGYRPSY-PQLGNSS--YPSSSLSTQP----------YGG-------- 452
S++ Y +ID+GY P+Y PQL N PS+ + T+P GG
Sbjct: 413 PVSVSGGYARIDSGYVPAYPPQLSNRQEPLPSTYMGTEPVQYRPTAYSQLGGPSTYTPTL 472
Query: 453 ----YGS-----SGVGGYTSYRL 466
YGS S VGGY+SY L
Sbjct: 473 TGQTYGSEYRPASDVGGYSSYNL 495
>gi|357479529|ref|XP_003610050.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355511105|gb|AES92247.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 431
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 279/413 (67%), Positives = 334/413 (80%), Gaps = 10/413 (2%)
Query: 61 DAAAVP-----EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD 115
DAAA P EK+WPGWPGHCVFR+IVPV+KVG IIGRKGELIKKTCE+T ARI+VLD
Sbjct: 22 DAAANPTDESESEKRWPGWPGHCVFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLD 81
Query: 116 GPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVD-AKASGAAFCSVRLL 174
PV +PDRIVLISGKE+ EAP+SPAMDA +R+FKRVSGL E D + A+G A CS+RLL
Sbjct: 82 APVGTPDRIVLISGKEDLEAPLSPAMDAILRIFKRVSGLSETDNNNTAAAGVALCSIRLL 141
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
V STQAINLIGKQGS IK+IQEN+GA +RVLS DE P Y DERI+++QGE KVLKAL
Sbjct: 142 VASTQAINLIGKQGSSIKAIQENTGAVIRVLSGDELPSYAGADERIIDLQGETLKVLKAL 201
Query: 235 EAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTR 294
EAVVGHLRKFLVD V+PLFEKT NA+ISQ+RQ + WADK SL++A+Q +I + T+
Sbjct: 202 EAVVGHLRKFLVDSSVIPLFEKTCNATISQDRQTDAWADKPSLYSASQPSIVADI--PTK 259
Query: 295 RESLFLEREPQLESRYRLSGISIYGQD-PALSTIRSSALGRASGPIVTQITQTMQIPISY 353
R+S F +RE QL+S S +S+YGQD ++S +RSSA RAS IVT + QTMQIP+SY
Sbjct: 260 RDSFFADRESQLDSLLSSSTMSLYGQDSSSISGLRSSAFNRASASIVTTVIQTMQIPLSY 319
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
AEDIIG+ GT+I+ IRRTSGAI+TVQESR +PDEI VEIKGTS+QVQ AQQLIQE + NH
Sbjct: 320 AEDIIGIQGTNIDYIRRTSGAILTVQESR-VPDEIIVEIKGTSTQVQTAQQLIQEVITNH 378
Query: 414 KESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPYGGYGSSGVGGYTSYRL 466
E+I S+Y ++DTG R SY QLG+SSYPSSSL +QPY GYGSSG G Y+++RL
Sbjct: 379 NETIASNYARLDTGLRSSYSQLGSSSYPSSSLPSQPYNGYGSSGPGDYSTFRL 431
>gi|357449597|ref|XP_003595075.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355484123|gb|AES65326.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 470
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 276/482 (57%), Positives = 358/482 (74%), Gaps = 28/482 (5%)
Query: 1 MATAETTDNGSINLPEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGP 60
MAT E NG+ LP +P +A + T ++EA ++ E TE TG
Sbjct: 1 MATTEQPQNGTATLPPENP---SADAQQLTIDTEATTNESTQEIETVTE--------TGT 49
Query: 61 DAAAV---PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP 117
D AA P E++WPGWPG CVFR+IVPV KVG IIGRKG+LIKK C++T+AR++VLD
Sbjct: 50 DTAATAVTPPEQRWPGWPGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDAD 109
Query: 118 VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKA-SGAAFCSVRLLVP 176
+ PDRI+LISGKEE EA +SPAMDA +R+FKRVSGL E D + K +G CS+RLLV
Sbjct: 110 LGIPDRIILISGKEELEAAISPAMDAVIRIFKRVSGLSETDSENKGPAGVTLCSIRLLVA 169
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
STQAI+LIGKQG++I+SIQE+SGASVRVLS DE ++ T +ERIV++QGEA VLKALEA
Sbjct: 170 STQAISLIGKQGTIIRSIQESSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEA 229
Query: 237 VVGHLRKFLVDQGVLPLFEKTYNASI-SQERQVETWADKSSLHAATQSAISTEYTPSTRR 295
V+GHLRKFLVD +LP++EKTYNAS+ Q+RQ ETW+DK LH +Q+++ ++ T+R
Sbjct: 230 VIGHLRKFLVDHSILPVYEKTYNASLPQQDRQAETWSDKPLLHTTSQTSMFSDIPFPTKR 289
Query: 296 ESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAE 355
+S+F +RE L+S S +S+YGQD +LS +RSS+L R PIVT + QTMQIP+SYAE
Sbjct: 290 DSVFADRESHLDSLLSSSTMSLYGQDSSLSGVRSSSLSRVGAPIVTTVIQTMQIPLSYAE 349
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
DIIG+ GT+I+ IRRTSGAI+TVQESR +PDEI VEIKGT+SQVQ AQQLIQE +++H+E
Sbjct: 350 DIIGIQGTNIDYIRRTSGAILTVQESR-VPDEIVVEIKGTTSQVQTAQQLIQEVISSHRE 408
Query: 416 SITSSYGQIDTG----------YRPSYPQLGNSS-YPSSSLSTQPYGGYGSSGVGGYTSY 464
+T+SYG++D G + SY QLGN+S P SSLS+QPY GYG+SG+G Y+++
Sbjct: 409 PVTNSYGRLDAGRMDVGLRSLYSQSSYSQLGNTSRIPPSSLSSQPYTGYGASGLGDYSTF 468
Query: 465 RL 466
RL
Sbjct: 469 RL 470
>gi|297735477|emb|CBI17917.3| unnamed protein product [Vitis vinifera]
Length = 364
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/349 (72%), Positives = 295/349 (84%), Gaps = 7/349 (2%)
Query: 104 CEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKA 163
CE+TRARI+VLDG V + DRIVLISG+EEPEAP+SPAMDA +RVFKRV+GL E++ D KA
Sbjct: 2 CEETRARIRVLDGAVGTSDRIVLISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGKA 61
Query: 164 SGAA---FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERI 220
GAA FCS+RLLV STQAINLIGKQGSLIKSIQE++GASVRVLS DE PFY DERI
Sbjct: 62 YGAAGVAFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADERI 121
Query: 221 VEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAA 280
VE+QGEA KV KALEAVVGHLRKFLVD VLPLFE+TYNA+ISQ+RQ +TWADKS LH
Sbjct: 122 VELQGEALKVQKALEAVVGHLRKFLVDHSVLPLFERTYNATISQDRQSDTWADKSLLHGT 181
Query: 281 TQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIV 340
+Q+ + ++Y+ +RESL+L+RE Q+E SG+ +YGQ+ LS IRSS LGRA PIV
Sbjct: 182 SQTGMGSDYSLPAKRESLYLDRETQMEH----SGLPMYGQEHGLSGIRSSGLGRAGAPIV 237
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
TQI QTMQIP+SYAEDIIG+GG +I IRRTSGAI+TVQESRGLPDEITVEIKGTSSQVQ
Sbjct: 238 TQIAQTMQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEIKGTSSQVQ 297
Query: 401 LAQQLIQEYMNNHKESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQP 449
AQQLIQE+++NHKE + SSYG++D+G R SY QLGN+SY SSSLS+QP
Sbjct: 298 TAQQLIQEFISNHKEPVPSSYGKMDSGLRSSYSQLGNTSYSSSSLSSQP 346
>gi|224115590|ref|XP_002332094.1| predicted protein [Populus trichocarpa]
gi|222874914|gb|EEF12045.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 259/436 (59%), Positives = 320/436 (73%), Gaps = 24/436 (5%)
Query: 32 ESEAPPTIGSENTEHTTESDSALPQSTGPDA--------AAVPEEKKWPGWPGHCVFRMI 83
+S A T+ SE TE + A TG +A + KWPGWPG VFR+I
Sbjct: 2 DSSAATTLSSEQTEANAINKRA---ETGTEALTEAGQQQGQSQSQDKWPGWPGDNVFRLI 58
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VPV KVGSIIGRKGEL+KK C++TRARI++L+GP+ DRIVLISGKEEPEAP+SPAMDA
Sbjct: 59 VPVSKVGSIIGRKGELVKKMCDETRARIRILEGPLGITDRIVLISGKEEPEAPLSPAMDA 118
Query: 144 AVRVFKRVSGLPENDVD-------AKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+RVFKRVSGL + D A A+G+AFCS+RLLV S+QAINLIGKQGS+IKSIQE
Sbjct: 119 VLRVFKRVSGLSPGEGDNTGSAAAAAAAGSAFCSIRLLVASSQAINLIGKQGSIIKSIQE 178
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
N+G VRV++ D+ P Y T DERIVE+ GEA KV KALEAV+GHLRKFLVD V+P+FEK
Sbjct: 179 NTGVVVRVMAEDDIPTYATSDERIVEIHGEAMKVFKALEAVIGHLRKFLVDHSVIPIFEK 238
Query: 257 TYNASISQERQVETWADKS--SLHA--ATQSAISTEYTPSTRRESLFLEREPQLESRYRL 312
TYNA+IS ER + AD + SLH+ A S I ++Y+ S +R+ E E E +
Sbjct: 239 TYNATISLERPADACADNAQPSLHSAPAFSSGIISDYSLSLKRDPSIYEHETHFEHKISQ 298
Query: 313 SGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTS 372
G S+YG DP L +RS+ LGRA+ PIVTQ+TQTMQ+P+SYAEDIIGV G++I IRRTS
Sbjct: 299 PGFSLYG-DPGLVGLRSTGLGRATAPIVTQVTQTMQVPLSYAEDIIGVAGSNIAYIRRTS 357
Query: 373 GAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSY 432
GAI+++QESRGLPDEITVEIKGTSSQVQ+AQQLIQE+++NHKE + YG+ID G +Y
Sbjct: 358 GAILSIQESRGLPDEITVEIKGTSSQVQMAQQLIQEFISNHKEPTPNMYGKIDVGLN-AY 416
Query: 433 PQLGNSSYPSSSLSTQ 448
Q+ S YPSSS ++
Sbjct: 417 SQIAESGYPSSSFTSH 432
>gi|224121400|ref|XP_002330818.1| predicted protein [Populus trichocarpa]
gi|222872620|gb|EEF09751.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 243/391 (62%), Positives = 303/391 (77%), Gaps = 12/391 (3%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
+KWPGWPG VFR+IVP+ KVGSIIGR+GEL+KK C++TRARI++L+GP+ DRIVLIS
Sbjct: 2 EKWPGWPGDNVFRLIVPLSKVGSIIGRRGELVKKMCDETRARIRILEGPLGISDRIVLIS 61
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVD-----AKASGAAFCSVRLLVPSTQAINL 183
GKEEPEAP SPAMDA +RVFKRVSGL + D A A+G+AFCS+RLLV S+QAINL
Sbjct: 62 GKEEPEAPQSPAMDAVMRVFKRVSGLSPGEGDNTGSAAAAAGSAFCSIRLLVASSQAINL 121
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
IGKQGS+IKSIQEN+GA+V V++ DE P Y T DERIVE+ GEA KV KALEAV+G LRK
Sbjct: 122 IGKQGSIIKSIQENTGAAVHVMAEDELPSYATSDERIVEIHGEAMKVFKALEAVIGQLRK 181
Query: 244 FLVDQGVLPLFEKTYNASISQERQVETWAD--KSSLHAA----TQSAISTEYTPSTRRES 297
FLVD V+P+FEKTYNA+ISQE + D + SLH+A S I+++Y+ S +R+
Sbjct: 182 FLVDHSVIPIFEKTYNATISQECPADARPDIAQPSLHSAYVPTIPSGIASDYSLSFKRDP 241
Query: 298 LFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDI 357
E E Q E + G+SIYGQDP + RS+ LGRA+ PIVTQ+TQTMQ+P+SYAEDI
Sbjct: 242 SIYEHETQFEHKISQPGLSIYGQDPGIVGFRSTGLGRAAAPIVTQVTQTMQVPLSYAEDI 301
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
IGV G++I IRRTS AI+++QESRGLPDEITVEIKGT +QVQ+AQQLIQE++ NHKE
Sbjct: 302 IGVAGSNIAYIRRTSRAILSIQESRGLPDEITVEIKGTGAQVQMAQQLIQEFITNHKEPA 361
Query: 418 TSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQ 448
+S YG+ID G +Y + + YPSSS ++
Sbjct: 362 SSMYGKIDAGLS-AYSHMAETGYPSSSFTSH 391
>gi|255574127|ref|XP_002527979.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223532605|gb|EEF34391.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 416
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 255/401 (63%), Positives = 312/401 (77%), Gaps = 16/401 (3%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
E KWPGWPG V+R+IVPV KVGSIIGRKGELIKK C +TRARI++LDGP S DRIVLI
Sbjct: 17 EGKWPGWPGDNVYRLIVPVAKVGSIIGRKGELIKKMCVETRARIRILDGPPSISDRIVLI 76
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS---GAAFCSVRLLVPSTQAINLI 184
SGKEEPEA +SPAMDA +RVFKRVSGL + DA S GAAF SV+LLV S+QAINLI
Sbjct: 77 SGKEEPEAALSPAMDAVLRVFKRVSGLSAGEADAMGSAVAGAAFSSVKLLVASSQAINLI 136
Query: 185 GKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
GKQGS IKSIQE++ A+VRVL+ +EAP Y T DERIVE+ GEA+KVLKALE V+G LRKF
Sbjct: 137 GKQGSTIKSIQESTAATVRVLAEEEAPSYATSDERIVEIHGEASKVLKALEGVIGQLRKF 196
Query: 245 LVDQGVLPLFEKTYNASISQERQVETWADK--------SSLHA--ATQSAISTEYTPSTR 294
LVD V+P+FEKT+NA ISQ+R + ADK ++LH+ A Q I +EY+ S +
Sbjct: 197 LVDHTVVPIFEKTHNAIISQDRSADARADKTQPSIPSLTALHSAPAPQVGIGSEYSLSLK 256
Query: 295 RESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYA 354
R+ +RE L+ + SG+ ++GQD +L +R + LGRA+ PIVTQ+TQTMQ+P+SYA
Sbjct: 257 RDPSIYDRESHLDQKIPQSGLLLFGQDSSLGGLRPTGLGRAAAPIVTQMTQTMQVPLSYA 316
Query: 355 EDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
EDIIGVGG++I IRRTSGAI+T+QESR PDEITVEIKGT+SQVQ+AQQLIQE+++N K
Sbjct: 317 EDIIGVGGSNIAYIRRTSGAILTIQESR-TPDEITVEIKGTASQVQMAQQLIQEFISNQK 375
Query: 415 ESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPYGGYGS 455
ES YG++DTGY SY Q+ SSYPSSS ++ GGYGS
Sbjct: 376 ESTPGIYGKMDTGY-SSYTQVAESSYPSSSFASH-IGGYGS 414
>gi|147844462|emb|CAN82085.1| hypothetical protein VITISV_031054 [Vitis vinifera]
Length = 473
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 263/477 (55%), Positives = 326/477 (68%), Gaps = 50/477 (10%)
Query: 1 MATAETTDNGSIN--LPEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDS-ALPQS 57
MAT TT+ +N P P+T +E+P + S A + ES+S A P++
Sbjct: 1 MATTGTTEPAPVNGAAQSPGSDPKTELSETPLSASNAAAAESEQAPSENLESESTAAPET 60
Query: 58 TGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP 117
P A+ EKKWPGWPG CVFR+IVPVLKVGSIIGRKGELIKK CE+TRARI+VLDG
Sbjct: 61 EAPAPAS---EKKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGA 117
Query: 118 VSSPDRI---------------------VLISGKEEPEAPVSPAMDAAVRVFKRVSGLPE 156
V + DRI VLISG+EEPEAP+SPAMDA +RVFKRV+GL E
Sbjct: 118 VGTSDRIGXMEKKMLSVLLKVVDNLLEKVLISGREEPEAPLSPAMDAVIRVFKRVTGLSE 177
Query: 157 ND----VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPF 212
++ D +G +C + ++ + GS +++ S V +L +E PF
Sbjct: 178 SEGDGLFDQVNTGEHWC-----ICASTVRSWFAHFGSKFQNLXAFS-XEVYLLXQNEVPF 231
Query: 213 YVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWA 272
Y DERIVE+QGEA KV KALEAVVGHLRKFLVD VLPLFE+TYNA+ISQ+RQ +TWA
Sbjct: 232 YAAADERIVELQGEALKVQKALEAVVGHLRKFLVDHSVLPLFERTYNATISQDRQSDTWA 291
Query: 273 DKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSAL 332
DKS LH +Q+ + ++Y+ +RESL+L+RE Q+E SG+ +YGQ+ LS IRSS L
Sbjct: 292 DKSLLHGTSQTGMGSDYSLPAKRESLYLDRETQMEH----SGLPMYGQEHGLSGIRSSGL 347
Query: 333 GRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEI 392
GRA PIVTQI QTMQIP+SYAEDIIG+GG +I IRRTSGAI+TVQESRGLPDEITVEI
Sbjct: 348 GRAGAPIVTQIAQTMQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEI 407
Query: 393 KGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQP 449
KGTSS QE+++NHKE + SSYG++D+G R SY QLGN+SY SSSLS+QP
Sbjct: 408 KGTSS---------QEFISNHKEPVPSSYGKMDSGLRSSYSQLGNTSYSSSSLSSQP 455
>gi|326511144|dbj|BAJ87586.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 450
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/384 (59%), Positives = 287/384 (74%), Gaps = 11/384 (2%)
Query: 65 VPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRI 124
VPE K+WPGWPG VFRM+VPVLKVGSIIGRKGELIK+ E+T+AR++VL+GPV + +RI
Sbjct: 38 VPEAKRWPGWPGDNVFRMVVPVLKVGSIIGRKGELIKRLVEETKARVRVLEGPVGATERI 97
Query: 125 VLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCSVRLLVPSTQAIN 182
VL+S KE+P + PAMDA +RVFKRV+G+ + + + AA C+ RL+VP QAIN
Sbjct: 98 VLVSAKEDPGLELPPAMDALIRVFKRVNGISDGAAEGTQTSAAPGVCAARLVVPGAQAIN 157
Query: 183 LIGKQGSLIKSIQENSGASVRVLSADEA--PFYVTEDERIVEMQGEAAKVLKALEAVVGH 240
LIGKQG+ IK+IQE +GA++RV+S DE PFYVT+DERIVE+QGE KVLKAL+AV H
Sbjct: 158 LIGKQGASIKAIQEGTGATIRVISVDERDRPFYVTDDERIVEIQGETEKVLKALQAVSNH 217
Query: 241 LRKFLVDQGVLPLFEKTYNASISQERQVETWADK-----SSLHAATQSAISTEYTPSTRR 295
LRKFLVD VLPLFEKT NA +SQ+R ETW D S Q + EY +R
Sbjct: 218 LRKFLVDHSVLPLFEKT-NAPVSQDRSAETWNDMPHHSIVSTQVNQQPEVRDEYVLPMKR 276
Query: 296 ESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAE 355
+ L+LEREP +E SG+S+YG+DPALS +R S + +GP++TQITQTMQIP++YAE
Sbjct: 277 DHLYLEREPLVEHNIHRSGVSLYGRDPALSALRPSGM-HGAGPLLTQITQTMQIPLTYAE 335
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
DIIGV G +I IR SGA++T+QES G PD+ITVEIKGTSSQVQ AQQLIQ+ + H+E
Sbjct: 336 DIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQSAQQLIQDSLAAHRE 395
Query: 416 SITSSYGQIDTGYRPSYPQLGNSS 439
+ SSY +D YR SYPQ G+S+
Sbjct: 396 PVRSSYAGLDPLYRSSYPQYGSSA 419
>gi|242040159|ref|XP_002467474.1| hypothetical protein SORBIDRAFT_01g028800 [Sorghum bicolor]
gi|241921328|gb|EER94472.1| hypothetical protein SORBIDRAFT_01g028800 [Sorghum bicolor]
Length = 452
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/384 (57%), Positives = 289/384 (75%), Gaps = 17/384 (4%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K+WPGWPG VFR++VPVLKVGSIIGRKGELIK+ E+T+AR+++L+GPV + +RIVL+S
Sbjct: 41 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVS 100
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA--AFCSVRLLVPSTQAINLIGK 186
GKE+P + PAMDA +RVFKRV G+ + + + A C+ RLLVP QAINLIGK
Sbjct: 101 GKEDPGLELPPAMDALMRVFKRVIGITDGAAEGTQAAATPGVCAARLLVPGAQAINLIGK 160
Query: 187 QGSLIKSIQENSGASVRVLSAD--EAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
QG+ IK+IQE++GA++RV+S D E PFYVT+DERI+E+QG+ KVLKAL+AV HLRKF
Sbjct: 161 QGATIKAIQESTGATIRVISVDERERPFYVTDDERIIEIQGDTEKVLKALQAVSNHLRKF 220
Query: 245 LVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSA-------ISTEYTPSTRRES 297
LVD VLPLFEKT N ++SQ+R + W+D S H + SA + EY +RES
Sbjct: 221 LVDHSVLPLFEKT-NTTVSQDRNGDGWSDMS--HPSIGSAQVNQPPSVVDEYILPVKRES 277
Query: 298 LFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDI 357
L+LEREP ++ SG+S+YG+DPALST+R S + +GP++TQITQTMQIP++YAEDI
Sbjct: 278 LYLEREPLVDHNIHRSGVSLYGRDPALSTLRPSGI-HGAGPLLTQITQTMQIPLTYAEDI 336
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
IGV G +I IR SGA++T+QES G PD+ITVEIKGTSSQVQ AQQLIQ+ + H+E +
Sbjct: 337 IGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQAAQQLIQDSLAAHREPV 396
Query: 418 TSSY--GQIDTGYRPSYPQLGNSS 439
SSY +D+ YR SY Q G+S+
Sbjct: 397 RSSYVGAGLDSVYRSSYSQYGSST 420
>gi|357147442|ref|XP_003574345.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 1-like
[Brachypodium distachyon]
Length = 447
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/367 (59%), Positives = 275/367 (74%), Gaps = 12/367 (3%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K+WPGWPG VFRM+VPV KVGSIIGRKGELIK+ E+T+AR++VLDGPV + +R+VL+S
Sbjct: 38 KRWPGWPGDSVFRMVVPVXKVGSIIGRKGELIKRLVEETKARVRVLDGPVGATERVVLVS 97
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA---FCSVRLLVPSTQAINLIG 185
GKEEP + PAMDA +RVFKRV+G+ + D+ AA C+ RLLVP QAINLIG
Sbjct: 98 GKEEPGLDLPPAMDALIRVFKRVNGITDVAADSTTQTAAPPGVCAARLLVPGAQAINLIG 157
Query: 186 KQGSLIKSIQENSGASVRVLSADEA--PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
KQG+ IK+IQE +GA++RV+S DE PFYVT+DERIVE+QGE KVLKAL+AV HLRK
Sbjct: 158 KQGASIKAIQEGTGATIRVISIDERERPFYVTDDERIVEIQGETEKVLKALQAVSNHLRK 217
Query: 244 FLVDQGVLPLFEKTYNASISQERQVETWADKS-----SLHAATQSAISTEYTPSTRRESL 298
FLVD VLPLFEKT NA +SQ+R +TWAD S Q + EY +RE L
Sbjct: 218 FLVDHSVLPLFEKT-NAPVSQDRSADTWADMPHHSIVSTQVNQQPEVRDEYILPMKREHL 276
Query: 299 FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
+LEREP ++ SG+S+YG+DPALS +R S + + GP++TQITQTMQIP++YAEDII
Sbjct: 277 YLEREPLVDHNIHRSGVSLYGRDPALSALRPSGM-HSVGPLLTQITQTMQIPLTYAEDII 335
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESIT 418
GV G +I IR SGA++T+QES G PD+ITVEIKGTSSQVQ AQQLIQ+ + H+E +
Sbjct: 336 GVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQAAQQLIQDSLAAHREPVR 395
Query: 419 SSYGQID 425
SSY +D
Sbjct: 396 SSYAGLD 402
>gi|226502036|ref|NP_001148766.1| nucleic acid binding protein [Zea mays]
gi|195621990|gb|ACG32825.1| nucleic acid binding protein [Zea mays]
Length = 441
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/384 (57%), Positives = 287/384 (74%), Gaps = 18/384 (4%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K+WPGWPG VFR++VPVLKVGSIIGRKGELIK+ E T+AR+++L+GPV + +RIVL+S
Sbjct: 31 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEGTKARVRILEGPVGATERIVLVS 90
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA--AFCSVRLLVPSTQAINLIGK 186
GKE+P +SPAMDA +RVFKRV G+ + + + A C+ RLLVP QAINLIGK
Sbjct: 91 GKEDPGLELSPAMDALMRVFKRVIGITDGAAEGTQAAATPGVCAARLLVPGAQAINLIGK 150
Query: 187 QGSLIKSIQENSGASVRVLSADEA--PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
QG+ IK+IQE++GA++RV+S DE PFYVT+DERIVE+QG+ KVLKAL+AV HLRKF
Sbjct: 151 QGATIKAIQESTGATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKF 210
Query: 245 LVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSA-------ISTEYTPSTRRES 297
LVD VLPLFEKT N ++SQ+ V W+D S H + SA + EY +R++
Sbjct: 211 LVDHSVLPLFEKT-NTAVSQDHNV-GWSDMS--HPSIGSAQVNQPPSVVDEYILPVKRDT 266
Query: 298 LFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDI 357
L+LEREP L+ SG+S+YG+DPALST+R + +GP++TQITQTMQIP++YAEDI
Sbjct: 267 LYLEREPLLDHNIHRSGVSLYGRDPALSTLRPPGI-HGAGPLLTQITQTMQIPLTYAEDI 325
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
IGV G +I IR SGA++T+QES G PD+ITVEIKGTSSQVQ AQQLIQ+ + H+E +
Sbjct: 326 IGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQAAQQLIQDSLAAHREPV 385
Query: 418 TSSY--GQIDTGYRPSYPQLGNSS 439
SSY +D+ YR SY Q G+S+
Sbjct: 386 RSSYVGAGLDSLYRSSYSQYGSST 409
>gi|12597878|gb|AAG60186.1|AC084763_6 putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|31433543|gb|AAP55041.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|125532979|gb|EAY79544.1| hypothetical protein OsI_34673 [Oryza sativa Indica Group]
gi|125575714|gb|EAZ16998.1| hypothetical protein OsJ_32483 [Oryza sativa Japonica Group]
gi|215769329|dbj|BAH01558.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 458
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/384 (58%), Positives = 288/384 (75%), Gaps = 16/384 (4%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K+WPGWPG VFR++VPVLKVGSIIGRKGELIK+ E+T+A+++VL+GPV + +RIVL+S
Sbjct: 47 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEETKAKVRVLEGPVGATERIVLVS 106
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA--KASGAAFCSVRLLVPSTQAINLIGK 186
GKE+P + PAMDA +RVFKRVSG+ + + A+ C+ RLLVP QAINLIGK
Sbjct: 107 GKEDPALELPPAMDALMRVFKRVSGITDGAAEGTQAATAPGVCAARLLVPGAQAINLIGK 166
Query: 187 QGSLIKSIQENSGASVRVLSADEA--PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
QG+ IK+IQE +GA++RV+S DE PFYV EDERIVE+QGE KVLKAL+AV HLRKF
Sbjct: 167 QGASIKAIQEGTGATIRVISIDERERPFYVIEDERIVEIQGETEKVLKALQAVSNHLRKF 226
Query: 245 LVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSA-------ISTEYTPSTRRES 297
LVD VLPLFEKT NA+++Q+R + W D S H + SA + EY +R+
Sbjct: 227 LVDHSVLPLFEKT-NATVTQDRSTDAWTDIS--HPSIVSAQINQPPPVVDEYILPMKRDP 283
Query: 298 LFLEREPQLESRYRLSGISIYGQDPALSTIRSSAL--GRASGPIVTQITQTMQIPISYAE 355
LFLEREP ++ SG+S+YG+DPALST+R+S + G GP+++QITQTMQIP++YAE
Sbjct: 284 LFLEREPLIDHNIHRSGVSLYGRDPALSTLRTSGIHGGGPGGPLLSQITQTMQIPLTYAE 343
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
DIIGV G +I IR SGA++T+QES G PD+ITVE+KGTSSQVQ A QLIQ+ + H++
Sbjct: 344 DIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEMKGTSSQVQAAYQLIQDSLAAHRD 403
Query: 416 SITSSYGQIDTGYRPSYPQLGNSS 439
S+ SSY +D YRPSY Q G+S+
Sbjct: 404 SVRSSYAGLDPVYRPSYSQYGSST 427
>gi|414867775|tpg|DAA46332.1| TPA: nucleic acid binding protein [Zea mays]
Length = 448
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/381 (56%), Positives = 285/381 (74%), Gaps = 13/381 (3%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K+WPGWPG VFR++VPVLKVGSIIGRKGELIK+ E+T+AR+++L+GPV + +RIVL+S
Sbjct: 37 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVS 96
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCSVRLLVPSTQAINLIGK 186
GKE+P+ + PAMDA +RVFKRV+G+ + + + A C+ RLLVP QAINLIGK
Sbjct: 97 GKEDPDLELPPAMDALMRVFKRVTGITDGAAEGTQAAATPDVCAARLLVPGAQAINLIGK 156
Query: 187 QGSLIKSIQENSGASVRVLSADEA--PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
QG+ IK+IQE++ A++RV+S DE PFYVT+DERIVE+QG+ KVLKAL+AV HLRKF
Sbjct: 157 QGATIKAIQESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKF 216
Query: 245 LVDQGVLPLFEKTYNASISQERQVETWADKS-----SLHAATQSAISTEYTPSTRRESLF 299
LVD VLPLFEKT N ++SQ+R + W+D S S ++ +Y +R+ L+
Sbjct: 217 LVDHSVLPLFEKT-NTTVSQDRNGDGWSDMSRPSIGSAQVNQLPSVLDDYILQVKRDPLY 275
Query: 300 LEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIG 359
LERE ++ SG+S+YG+DPALST+R SA+ +G ++TQITQTMQIP++YAEDIIG
Sbjct: 276 LERESLVDHNIHRSGVSLYGRDPALSTLRPSAV-HGAGSLLTQITQTMQIPLTYAEDIIG 334
Query: 360 VGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITS 419
V G +I IR SGA++T+QES G PD+ITVEIKGTSSQVQ AQQLIQ+ + H+E + S
Sbjct: 335 VKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQAAQQLIQDSLAAHREPVRS 394
Query: 420 SY--GQIDTGYRPSYPQLGNS 438
SY +D+ YR SY Q G+S
Sbjct: 395 SYVGAGLDSVYRSSYSQYGSS 415
>gi|413955216|gb|AFW87865.1| nucleic acid binding protein [Zea mays]
Length = 441
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/384 (57%), Positives = 286/384 (74%), Gaps = 18/384 (4%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K+WPGWPG VFR++VPVLKVGSIIGRKGELIK+ E T+AR+++L+GPV + +RIVL+S
Sbjct: 31 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEGTKARVRILEGPVGATERIVLVS 90
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA--AFCSVRLLVPSTQAINLIGK 186
GKE+P +SPAMDA +RVFKRV G+ + + + A C+ RLLVP QAINLIGK
Sbjct: 91 GKEDPGLELSPAMDALMRVFKRVIGITDGAAEGTQAAATPGVCAARLLVPGAQAINLIGK 150
Query: 187 QGSLIKSIQENSGASVRVLSADEA--PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
QG+ IK+IQE++GA++RV+S DE PFYVT+DERIVE+QG+ KVLKAL+AV HLRKF
Sbjct: 151 QGATIKAIQESTGATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKF 210
Query: 245 LVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSA-------ISTEYTPSTRRES 297
LVD VLPLFEKT N ++SQ+ V W+D S H + SA + EY +R++
Sbjct: 211 LVDHSVLPLFEKT-NTAVSQDHNV-GWSDMS--HPSIGSAQVNQPPSVVDEYILPVKRDT 266
Query: 298 LFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDI 357
L+LERE L+ SG+S+YG+DPALST+R + +GP++TQITQTMQIP++YAEDI
Sbjct: 267 LYLERETLLDHNIHRSGVSLYGRDPALSTLRPPGI-HGAGPLLTQITQTMQIPLTYAEDI 325
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
IGV G +I IR SGA++T+QES G PD+ITVEIKGTSSQVQ AQQLIQ+ + H+E +
Sbjct: 326 IGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQAAQQLIQDSLAAHREPV 385
Query: 418 TSSY--GQIDTGYRPSYPQLGNSS 439
SSY +D+ YR SY Q G+S+
Sbjct: 386 RSSYVGAGLDSLYRSSYSQYGSST 409
>gi|219888687|gb|ACL54718.1| unknown [Zea mays]
Length = 448
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/381 (56%), Positives = 285/381 (74%), Gaps = 13/381 (3%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K+WPGWPG VFR++VPVLKVGSIIGRKGELIK+ E+T+AR+++L+GPV + +RIVL+S
Sbjct: 37 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVS 96
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCSVRLLVPSTQAINLIGK 186
GKE+P+ + PAMDA +RVFKRV+G+ + + + A C+ RLLVP QAINLIGK
Sbjct: 97 GKEDPDLELPPAMDALMRVFKRVTGITDGAAEGTQAAATPDVCAARLLVPGAQAINLIGK 156
Query: 187 QGSLIKSIQENSGASVRVLSADEA--PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
QG+ IK+IQE++ A++RV+S DE PFYVT+DERIVE+QG+ KVLKAL+AV HLRKF
Sbjct: 157 QGATIKAIQESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKF 216
Query: 245 LVDQGVLPLFEKTYNASISQERQVETWADKS-----SLHAATQSAISTEYTPSTRRESLF 299
LVD VLPLFEKT N ++SQ+R + W+D S S ++ +Y +R+ L+
Sbjct: 217 LVDHSVLPLFEKT-NTTVSQDRNGDGWSDMSRPSIGSAQVNQLPSVLDDYILQVKRDPLY 275
Query: 300 LEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIG 359
LERE ++ SG+S+YG+DPALST+R SA+ +G ++TQITQTMQIP++YAEDIIG
Sbjct: 276 LERESLVDHNIHRSGVSLYGRDPALSTLRPSAV-HGAGSLLTQITQTMQIPLTYAEDIIG 334
Query: 360 VGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITS 419
V G +I IR SGA++T+QES G PD+ITVEIKGTSSQVQ AQQLIQ+ + H+E + S
Sbjct: 335 VKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQAAQQLIQDSLAAHREPVRS 394
Query: 420 SY--GQIDTGYRPSYPQLGNS 438
SY +D+ YR SY Q G+S
Sbjct: 395 SYVGAGLDSVYRSSYSQYGSS 415
>gi|226528431|ref|NP_001149906.1| nucleic acid binding protein [Zea mays]
gi|195635381|gb|ACG37159.1| nucleic acid binding protein [Zea mays]
Length = 448
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/381 (56%), Positives = 284/381 (74%), Gaps = 13/381 (3%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K+WPGWPG VFR++VPVLKVGSIIGRKGELIK+ E+T+AR+++L+GPV + +RIVL+S
Sbjct: 37 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVS 96
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCSVRLLVPSTQAINLIGK 186
GKE+P+ + PAMDA +RVFK V+G+ + + + A C+ RLLVP QAINLIGK
Sbjct: 97 GKEDPDLELPPAMDALMRVFKXVTGITDGAAEXTQAAATPDVCAARLLVPGAQAINLIGK 156
Query: 187 QGSLIKSIQENSGASVRVLSADEA--PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
QG+ IK+IQE++ A++RV+S DE PFYVT+DERIVE+QG+ KVLKAL+AV HLRKF
Sbjct: 157 QGATIKAIQESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKF 216
Query: 245 LVDQGVLPLFEKTYNASISQERQVETWADKS-----SLHAATQSAISTEYTPSTRRESLF 299
LVD VLPLFEKT N ++SQ+R + W+D S S ++ +Y +R+ L+
Sbjct: 217 LVDHSVLPLFEKT-NTTVSQDRNGDGWSDMSRPSIGSAQVNQLPSVLDDYILQVKRDPLY 275
Query: 300 LEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIG 359
LERE ++ SG+S+YG+DPALST+R SA+ +G ++TQITQTMQIP++YAEDIIG
Sbjct: 276 LERESLVDHNIHRSGVSLYGRDPALSTLRPSAV-HGAGSLLTQITQTMQIPLTYAEDIIG 334
Query: 360 VGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITS 419
V G +I IR SGA++T+QES G PD+ITVEIKGTSSQVQ AQQLIQ+ + H+E + S
Sbjct: 335 VKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQAAQQLIQDSLAAHREPVRS 394
Query: 420 SY--GQIDTGYRPSYPQLGNS 438
SY +D+ YR SY Q G+S
Sbjct: 395 SYVGAGLDSVYRSSYSQYGSS 415
>gi|257831439|gb|ACV71020.1| UPA21 [Capsicum annuum]
Length = 433
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/359 (59%), Positives = 276/359 (76%), Gaps = 7/359 (1%)
Query: 70 KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG 129
KWPGWPG V+R++VP++KVGSIIGRKGEL+KK CE T ARI+VL+GP+ + DRIVLISG
Sbjct: 46 KWPGWPGDNVYRLVVPLVKVGSIIGRKGELVKKMCEQTGARIRVLEGPLGNADRIVLISG 105
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGS 189
+E+P+A VSPAMDA RVFKRV+GL D A A+G AFCS +LL+ S+QA++LIG+ GS
Sbjct: 106 REDPDAQVSPAMDAVFRVFKRVAGLEGGDPGAAAAGFAFCSFKLLMASSQAVHLIGRHGS 165
Query: 190 LIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
IK IQE SGAS+RVLS D+ Y T DERIVE++GE KVL A EAVV LRKFLVD
Sbjct: 166 TIKEIQERSGASLRVLSEDDVVPYATADERIVEIRGEGLKVLDAFEAVVRQLRKFLVDHS 225
Query: 250 VLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESR 309
++P+FEKT SQ+R +E+WA+KS + A+S +Y+ S R++ L+ E ++S+
Sbjct: 226 MIPIFEKT----CSQDRPLESWAEKSQSLNSEAGAVS-DYSFSMNRDTYLLDCEAAMDSK 280
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
S +S+YGQDP IR+SA GR GP+VTQ+T+ MQ+P+ YAEDIIG+GGT+I IR
Sbjct: 281 LPRSTLSLYGQDPGHGGIRTSA-GRI-GPVVTQMTKVMQVPLLYAEDIIGIGGTNIAYIR 338
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGY 428
RTS A++TVQESRGLP+EIT+EIKG+SS+VQ A+QLIQE+++NHKE S YG + G+
Sbjct: 339 RTSKAVLTVQESRGLPEEITIEIKGSSSEVQTAEQLIQEFISNHKEPAPSMYGMREPGF 397
>gi|116787223|gb|ABK24418.1| unknown [Picea sitchensis]
gi|224286491|gb|ACN40952.1| unknown [Picea sitchensis]
Length = 481
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 196/411 (47%), Positives = 266/411 (64%), Gaps = 25/411 (6%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
+KKWPGWPG VFR++VP VG IIGRKGE +KK CE+TR+RIK+L+G +P+R V++
Sbjct: 75 DKKWPGWPGDNVFRLLVPTQMVGGIIGRKGEFVKKMCEETRSRIKILEGLRGTPERTVMV 134
Query: 128 SGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVD---AKASGAAFCSVRLLVPSTQAINL 183
S KEEPEAPVSPAMD +RV KR + G P+ + A+ G+ S RLLV TQA +L
Sbjct: 135 SAKEEPEAPVSPAMDGILRVHKRIIEGGPDGRGELGRAQQGGSGTISTRLLVAGTQAGSL 194
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
IG+QG+ IK+IQE SGA VRVL+A++ PF D+R+VE+QGEA V KA+E +V HLRK
Sbjct: 195 IGRQGATIKAIQEGSGAIVRVLAAEDLPFCALADDRLVEVQGEAGSVHKAVELIVSHLRK 254
Query: 244 FLVDQGVLPLFEKTYNASISQERQVE------TWADKSSLHAATQSAI---STEYTPST- 293
FLVD+ VLPLFE + +I + Q+E +W S + +T+Y S
Sbjct: 255 FLVDRSVLPLFEA--DRTIGNQPQIEENLPHQSWGHNQSSSVPSSGGAGLGNTQYMSSAF 312
Query: 294 RRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISY 353
+ ++ + + LES+ G+S+YG+DP+L+ S P++TQ+TQ MQIP+SY
Sbjct: 313 QHDNYYPPSDLPLESQGH-HGLSVYGRDPSLAG--HSVANPPPAPVITQVTQHMQIPLSY 369
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
A+ IIG G +I +RR SGA I VQE+RG+P E+TVEI+GT++QVQ AQQLIQ +M
Sbjct: 370 ADAIIGTAGANISYMRRNSGATIAVQETRGVPGEMTVEIRGTATQVQTAQQLIQNFMAGA 429
Query: 414 KESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPYGGYGSSGVGGYTSY 464
++Y +D+GY SYP NS Y S QP G+ GGY S+
Sbjct: 430 SGPPANTYSSVDSGYN-SYPTQ-NSMYSSP----QPNTGHAGHSTGGYVSH 474
>gi|449523878|ref|XP_004168950.1| PREDICTED: uncharacterized protein LOC101231198, partial [Cucumis
sativus]
Length = 323
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 165/229 (72%), Positives = 188/229 (82%), Gaps = 2/229 (0%)
Query: 209 EAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQV 268
E PFY DER+VE+QGE+ KVLKALE VVGHLRKFLVD VLPLFEK++N SQ+RQ
Sbjct: 62 EMPFYAGADERMVELQGESLKVLKALEGVVGHLRKFLVDHSVLPLFEKSFNTPASQDRQT 121
Query: 269 ETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIR 328
ETWADKSSL A+QS IS EY PST+RESLFL+RE +S SGIS+YGQD L TIR
Sbjct: 122 ETWADKSSLLTASQSIISAEYAPSTKRESLFLDREAHFDSHISSSGISLYGQDRVLPTIR 181
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEI 388
SS +GR+ GPIVTQ+TQTMQIP+SYAEDIIGVGGT+I IRR SGAI+T+QESRGLPDEI
Sbjct: 182 SSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEI 241
Query: 389 TVEIKGTSSQVQLAQQLIQEYMNNHKESIT-SSYGQID-TGYRPSYPQL 435
TVEIKGTSSQVQ+AQQLIQE +N KE +T SSYG++D TG R SY QL
Sbjct: 242 TVEIKGTSSQVQMAQQLIQEAVNAPKEPVTSSSYGRLDTTGLRSSYSQL 290
>gi|148907101|gb|ABR16694.1| unknown [Picea sitchensis]
Length = 490
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 240/354 (67%), Gaps = 18/354 (5%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
EKKWPGWPG VFRM+VP KVG IIGRKGE +KK CE+TR+RIK+LDG +P+R+V++
Sbjct: 40 EKKWPGWPGENVFRMLVPSQKVGGIIGRKGEFVKKMCEETRSRIKILDGLSGTPERVVMV 99
Query: 128 SGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGK 186
S KEEP+A +SPAMD ++V KR + G+ E +A+G + RLL+ Q+ +LIGK
Sbjct: 100 SAKEEPDATISPAMDGILKVHKRIIEGIDEVGRTQQAAGGPTIT-RLLLAGIQSGSLIGK 158
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
QG+ IKSIQENSG + +V+ +++ P+ D++++E+QGE A V KALE VV HLRKFLV
Sbjct: 159 QGATIKSIQENSGVAAKVVGSEDIPYCALADDKVLEIQGEPANVHKALELVVSHLRKFLV 218
Query: 247 DQGVLPLFE----KTYNASISQERQVETWADK--SSL-HAATQSAISTEYTPSTRRESLF 299
D+ VLP++E KT + + Q + W+ SSL ++ + +++YTP+ +
Sbjct: 219 DRSVLPMYEMNMSKTNQSQMEQNLSHQPWSHNQTSSLPNSGSGFGNNSKYTPTAPPHDNY 278
Query: 300 L---EREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAED 356
+ P+ S + G+++YG+DP S A P++TQ++Q MQIP+SYA+
Sbjct: 279 YAPSDLPPETHSHH---GLNMYGRDPLGG---HSVPNAAPAPVITQVSQRMQIPLSYADA 332
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+IG G +I RR SGAIIT++E+RG+P E+TVEI GT+SQVQ AQQLIQ +M
Sbjct: 333 VIGTNGANISYCRRNSGAIITIEETRGVPGEMTVEIHGTASQVQTAQQLIQNFM 386
>gi|255561873|ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538749|gb|EEF40349.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 548
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 191/422 (45%), Positives = 257/422 (60%), Gaps = 31/422 (7%)
Query: 56 QSTGPDAAAVPE--EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV 113
Q G DA V EKKWPGWPG VFRM+VP KVGSIIGRKGE IKK E+TRARIK+
Sbjct: 128 QEKGHDADTVSGGIEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI 187
Query: 114 LDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVR 172
LDGP + +R V++S KEEP++ + PAMD +RV KR V GL + A + S R
Sbjct: 188 LDGPPGTTERAVMVSAKEEPDSALPPAMDGLLRVHKRIVDGLDGDSSHASSGTGTKVSTR 247
Query: 173 LLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLK 232
LLVP++QA +LIGKQG +KSIQE S VRVL A++ P + +D+R+VE+ G+AA V K
Sbjct: 248 LLVPASQAGSLIGKQGGTVKSIQEASSCVVRVLGAEDLPVFALQDDRVVEVLGDAAGVHK 307
Query: 233 ALEAVVGHLRKFLVDQGVLPLFEKTYNA----SISQERQVETWADKSSL--HAATQSAIS 286
A+E + HLRKFLVD+ ++PLFE + ++W + +A
Sbjct: 308 AVELIASHLRKFLVDRSIIPLFEMHMQMQNPPHMEHMPPHQSWGPPQGIPPNAGGGPGYG 367
Query: 287 T-EYTPSTRR-ESLF--------LEREPQLESRYRLSGISIYGQDPALSTIRSSALGRAS 336
+Y P R+ E+ + +E++P GIS YG++ + + S+ +A+
Sbjct: 368 NPQYMPPPRQIENYYPPADLPPPMEKQPH-------QGISAYGREAPMG-VHGSSNSQAA 419
Query: 337 GPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTS 396
++TQITQ MQIP+SYA+ +IG GTSI IRR SGA +T+QE+RG+P E+TVEI GT+
Sbjct: 420 PSMITQITQQMQIPLSYADAVIGTAGTSISYIRRASGATVTIQETRGVPGEMTVEISGTA 479
Query: 397 SQVQLAQQLIQEYMNNHKESITS-SYGQIDTGYRPSYPQLGN--SSYPSSSLSTQPYGGY 453
SQVQ AQQLIQ +M + + G D GY P Y G+ +S PS+ GGY
Sbjct: 480 SQVQTAQQLIQNFMAEAGAPTQAQTGGSTDQGYNP-YAAHGSVYASPPSNPGHAGHTGGY 538
Query: 454 GS 455
GS
Sbjct: 539 GS 540
>gi|356505941|ref|XP_003521747.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 188/409 (45%), Positives = 251/409 (61%), Gaps = 20/409 (4%)
Query: 64 AVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDR 123
AV EKKWPGWPG VFRM+VP KVG IIGRKGE IKK E+TRAR+K+LDGP + R
Sbjct: 30 AVVAEKKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTVQR 89
Query: 124 IVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASG-AAFCSVRLLVPSTQAIN 182
V+IS KEEP + V PA+D +R+ KR+ E+D SG A S +LLVP++QA +
Sbjct: 90 AVMISAKEEPGSSVPPAVDGLLRIHKRIIDGLESDFTHAPSGVAGKVSTKLLVPASQAGS 149
Query: 183 LIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
LIGKQG +KSIQE S VRVL A++ P + +D+R+VE+ G+ A V KALE + HLR
Sbjct: 150 LIGKQGGTVKSIQEASNCIVRVLGAEDLPIFALQDDRVVEVVGDPAGVHKALELIASHLR 209
Query: 243 KFLVDQGVLPLFEKTYNASISQERQ----VETWA----DKSSLHAATQSAISTEYTPSTR 294
KFLVD+GV+P+FE + + ++W ++ ++Y P R
Sbjct: 210 KFLVDRGVIPIFEMNMQTANPHHAEHMPPHQSWGPSQGLPPNVGGGPGFGPPSQYMPPPR 269
Query: 295 R-ESLFLERE-PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPIS 352
+ +S + E P R GIS YG+D ++ + +S+ +++ IVTQITQ MQIP+S
Sbjct: 270 QLDSYYPSAEMPPPVDRQPHQGISAYGRDASIG-VHASSNTQSAPSIVTQITQQMQIPLS 328
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
YA+ +IG G SI IRR SGA +T+QE+RG+P E+TVEI GT+SQVQ AQQLIQ +M
Sbjct: 329 YADAVIGTAGASISYIRRASGATVTIQEARGVPGEMTVEISGTASQVQTAQQLIQNFMAE 388
Query: 413 HKESIT------SSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPYGGYGS 455
+ ++ D GY SYP G S Y S + GGYGS
Sbjct: 389 AAAAAAAPAQPQTTVPAADQGYN-SYPAHG-SVYASPPSNPGHAGGYGS 435
>gi|356573119|ref|XP_003554712.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Glycine max]
Length = 446
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 189/414 (45%), Positives = 252/414 (60%), Gaps = 20/414 (4%)
Query: 59 GPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV 118
G + A V EKKWPGWPG VFRM+VP KVG IIGRKGE IKK E+TRAR+K+LDGP
Sbjct: 28 GGEEAVVVAEKKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPP 87
Query: 119 SSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASG-AAFCSVRLLVPS 177
+ R V+IS KEEP + V PA+D +RV KR+ E+D SG A S +LLVP+
Sbjct: 88 GTVQRAVMISAKEEPGSSVPPAVDGLLRVHKRIIDGLESDFTHAPSGVAGKVSTKLLVPA 147
Query: 178 TQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+QA +LIGKQG +KSIQE S VRVL A++ P + +D+R+VE+ G+ V KALE +
Sbjct: 148 SQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPIFALQDDRVVEVVGDPTGVHKALELI 207
Query: 238 VGHLRKFLVDQGVLPLFEKTYNASISQERQ----VETWADKSSL----HAATQSAISTEY 289
HLRKFLVD+GV+P+FE + + + ++W L + ++Y
Sbjct: 208 ASHLRKFLVDRGVIPIFEMNMQTANTHHAEHMPPHQSWGPPQGLPPNVGGGSGFGPPSQY 267
Query: 290 TPSTRR-ESLFLERE-PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTM 347
P R+ +S + E P R GIS YG+D ++ + +S+ +++ IVTQITQ M
Sbjct: 268 MPPPRQLDSYYPPAEMPPPVDRQPHQGISAYGRDASIG-VHASSNTQSAPSIVTQITQQM 326
Query: 348 QIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
QIP+SYA+ +IG G SI IRR SGA +T+QE+RG+P E+TVEI GT+SQVQ AQQLIQ
Sbjct: 327 QIPLSYADAVIGTAGASISYIRRASGATVTIQEARGVPGEMTVEISGTASQVQTAQQLIQ 386
Query: 408 EYMNNHKESIT------SSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPYGGYGS 455
+M + ++ D GY SYP G S Y S + GGY S
Sbjct: 387 NFMAEAAAAAAAPAQPQTTVPAADQGYN-SYPAHG-SLYASPPSNPGHAGGYSS 438
>gi|168039902|ref|XP_001772435.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676232|gb|EDQ62717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 375
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 182/379 (48%), Positives = 243/379 (64%), Gaps = 19/379 (5%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
EKKW GWPG VFR++VPV KVG IIGRKGE +K+ CE+TR+RIK+L+G + +RIV++
Sbjct: 3 EKKWAGWPGDNVFRLVVPVQKVGGIIGRKGEFVKRMCEETRSRIKILEGVPGTAERIVMV 62
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRV-SGLPENDVDAK-ASGAAFCSVRLLVPSTQAINLIG 185
S +E+PEA +SPAM+ +RV +RV G VDA+ A G A S RLLV +TQA +LIG
Sbjct: 63 SAREDPEAAISPAMEGLLRVHRRVIEGAEPESVDAEIAPGGAPVSSRLLVAATQAGSLIG 122
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
+QG+ IKSIQ+ SGA+VRVL A+E P D+R+VE+QG+ V +A+E VV HLRKFL
Sbjct: 123 RQGATIKSIQDTSGANVRVLPAEELPLCALADDRVVEVQGDPRNVQRAMELVVSHLRKFL 182
Query: 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQ-------SAISTEYTPSTRRESL 298
VD+ VLPLFE N +Q Q T + + Q S ST Y +
Sbjct: 183 VDRSVLPLFE--LNVMANQNNQQSTGSQWQQPSSTQQQQPPSYSSNDSTYYGGADISHHS 240
Query: 299 FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
+++ + G+S+YG+DP T+ S P++TQ+TQ MQIP+SYA+ II
Sbjct: 241 QTQQQSHDLANQHHHGVSMYGRDP---TLGGSIAPPPPAPVITQVTQHMQIPLSYADAII 297
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES-- 416
G G +I +RRTSGA IT+QE+R +P E+TVEI G++SQVQ AQQLIQ +M
Sbjct: 298 GSAGANISYMRRTSGATITIQETRSVPGEMTVEIHGSASQVQTAQQLIQNFMTGASSGPP 357
Query: 417 -ITSSYGQ-IDTGYRPSYP 433
TS+Y +DT Y SYP
Sbjct: 358 PYTSTYSSTVDTNY-SSYP 375
>gi|297601352|ref|NP_001050707.2| Os03g0627500 [Oryza sativa Japonica Group]
gi|255674723|dbj|BAF12621.2| Os03g0627500, partial [Oryza sativa Japonica Group]
Length = 512
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 183/437 (41%), Positives = 253/437 (57%), Gaps = 52/437 (11%)
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
D+ V +KKWPGWPG VFR+++P KVG+IIGRKGE IKK CE+++ARIK+LDGP
Sbjct: 93 DSLPVEADKKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGV 152
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKRV-------SGLPENDVDAKASGAAFCSVRL 173
P+R V+IS K+EP+AP+SPAMD RV+KR+ SG PE ++ + RL
Sbjct: 153 PERTVMISAKDEPDAPISPAMDGLFRVYKRITDGSDGDSGQPERNI------SNVGPTRL 206
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA 233
LVP++QA +LIGKQG+ IKSIQ++S + VR++ + P D+R+VE+QGE V KA
Sbjct: 207 LVPASQAGSLIGKQGATIKSIQDSSKSIVRIV--ETLPLVALNDDRVVEIQGEPVGVQKA 264
Query: 234 LEAVVGHLRKFLVDQGVLPLFE---KTYNASISQERQVETWADKSSLHAATQSAI----- 285
LE++ HLRKFLVD+ VLPLFE K +NA Q S +
Sbjct: 265 LESIASHLRKFLVDRSVLPLFEGQMKMHNAQREQAMAAPQPWGPPQPWGPPPSHLPPGGP 324
Query: 286 ----STEYTPSTRRESLF-------LEREPQLESRYRLSGISIYGQDPALSTIRSSALGR 334
++ P +++ + +E++P GIS YG++ T S++ +
Sbjct: 325 GYGGHPQFMPPRPQDNYYPPPDVPSMEKQPHY-------GISAYGRE--APTGVSASGNQ 375
Query: 335 ASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKG 394
+ +Q+T MQIP+SYA+ +IG G SI IRR SGA +T+QESRG P E+TVEI G
Sbjct: 376 PPSHVASQVTHNMQIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTVEIIG 435
Query: 395 TSSQVQLAQQLIQEYMNNHKE-----SITSSYGQIDTGYRPSYPQLGNSSYPS--SSLST 447
++SQVQ AQQL+Q +M + + +D Y SYP +SY S S
Sbjct: 436 SASQVQTAQQLVQNFMAEAPQGPPPPASNPPAPAVDLSYG-SYPPPYGASYGSAASGAGP 494
Query: 448 QPYGGYGSSGVGGYTSY 464
P+ G GS G Y SY
Sbjct: 495 APHNG-GSYGGTTYPSY 510
>gi|16924113|gb|AAL31692.1|AC092390_13 putative RNA binding protein [Oryza sativa Japonica Group]
gi|108709929|gb|ABF97724.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|215695360|dbj|BAG90551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625405|gb|EEE59537.1| hypothetical protein OsJ_11804 [Oryza sativa Japonica Group]
Length = 510
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 183/437 (41%), Positives = 253/437 (57%), Gaps = 52/437 (11%)
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
D+ V +KKWPGWPG VFR+++P KVG+IIGRKGE IKK CE+++ARIK+LDGP
Sbjct: 91 DSLPVEADKKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGV 150
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKRV-------SGLPENDVDAKASGAAFCSVRL 173
P+R V+IS K+EP+AP+SPAMD RV+KR+ SG PE ++ + RL
Sbjct: 151 PERTVMISAKDEPDAPISPAMDGLFRVYKRITDGSDGDSGQPERNI------SNVGPTRL 204
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA 233
LVP++QA +LIGKQG+ IKSIQ++S + VR++ + P D+R+VE+QGE V KA
Sbjct: 205 LVPASQAGSLIGKQGATIKSIQDSSKSIVRIV--ETLPLVALNDDRVVEIQGEPVGVQKA 262
Query: 234 LEAVVGHLRKFLVDQGVLPLFE---KTYNASISQERQVETWADKSSLHAATQSAI----- 285
LE++ HLRKFLVD+ VLPLFE K +NA Q S +
Sbjct: 263 LESIASHLRKFLVDRSVLPLFEGQMKMHNAQREQAMAAPQPWGPPQPWGPPPSHLPPGGP 322
Query: 286 ----STEYTPSTRRESLF-------LEREPQLESRYRLSGISIYGQDPALSTIRSSALGR 334
++ P +++ + +E++P GIS YG++ T S++ +
Sbjct: 323 GYGGHPQFMPPRPQDNYYPPPDVPSMEKQPHY-------GISAYGRE--APTGVSASGNQ 373
Query: 335 ASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKG 394
+ +Q+T MQIP+SYA+ +IG G SI IRR SGA +T+QESRG P E+TVEI G
Sbjct: 374 PPSHVASQVTHNMQIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTVEIIG 433
Query: 395 TSSQVQLAQQLIQEYMNNHKE-----SITSSYGQIDTGYRPSYPQLGNSSYPS--SSLST 447
++SQVQ AQQL+Q +M + + +D Y SYP +SY S S
Sbjct: 434 SASQVQTAQQLVQNFMAEAPQGPPPPASNPPAPAVDLSYG-SYPPPYGASYGSAASGAGP 492
Query: 448 QPYGGYGSSGVGGYTSY 464
P+ G GS G Y SY
Sbjct: 493 APHNG-GSYGGTTYPSY 508
>gi|108862919|gb|ABA99242.2| FLK, putative, expressed [Oryza sativa Japonica Group]
gi|222617409|gb|EEE53541.1| hypothetical protein OsJ_36750 [Oryza sativa Japonica Group]
Length = 517
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 190/444 (42%), Positives = 253/444 (56%), Gaps = 36/444 (8%)
Query: 38 TIGSENTEHTTESDSALPQSTGP----------DAAAVPEEKKWPGWPGHCVFRMIVPVL 87
I N H E D A+P G A AV +EKKWPGWPG VFR++VP
Sbjct: 65 NINDGNVGHQHEEDQAIPSEEGHAYGGEAQGEQQANAVTDEKKWPGWPGESVFRILVPAQ 124
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
KVG++IGRKGE IKK CE++RARIKVLDGP PDR V+IS K+EP+AP+ PA+D +RV
Sbjct: 125 KVGAVIGRKGEFIKKMCEESRARIKVLDGPPGVPDRAVMISAKDEPDAPLPPAVDGLLRV 184
Query: 148 FKRVS-GLP-ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL 205
KR++ GL E+D +A+G RLLVP++QA +LIGKQG+ IKSIQ+ S +R+L
Sbjct: 185 HKRITDGLDGESDQPQRAAG-TVGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRIL 243
Query: 206 SADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE---KTYNASI 262
+ P D+R+VE+QGE V KA+E + HLRKFLVD+ VLPLFE K +NA
Sbjct: 244 ES--VPPVALSDDRVVEIQGEPLDVHKAVELIASHLRKFLVDRSVLPLFEMQMKVHNAHR 301
Query: 263 SQERQVETWADKSSLHAATQSA--------ISTEYTPSTRRESLFLEREPQLESRYRLSG 314
Q + + ++ P ++ + + + G
Sbjct: 302 EQPMPPPQTWGPPPPWGHPSNVPPGGPGYGGNPQFMPPRPQDHYYPPPDVPPVEKQPHYG 361
Query: 315 ISIYGQDPALSTIRSSALGRASGPI-VTQITQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
IS YG+D A T A G P +QIT +MQ+P+SYA+ +IG G SI IRR SG
Sbjct: 362 ISSYGRD-APPTGAPPASGNQHPPHGSSQITHSMQVPLSYADAVIGAAGASISYIRRHSG 420
Query: 374 AIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM-----NNHKESITSSYGQIDTGY 428
A I++QE G+P E+TVEI G++SQVQ AQQLI+ +M ++ +DTGY
Sbjct: 421 ATISIQE--GVPGEMTVEISGSASQVQTAQQLIKNFMAEASPQGPPQAPAPPAQPVDTGY 478
Query: 429 RPSYPQLGNSSYPSSSLSTQPYGG 452
SYP G +SY S P+ G
Sbjct: 479 S-SYPPYGGTSYGSPPGGAGPHNG 501
>gi|218193355|gb|EEC75782.1| hypothetical protein OsI_12699 [Oryza sativa Indica Group]
Length = 510
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 183/437 (41%), Positives = 253/437 (57%), Gaps = 52/437 (11%)
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
D+ V +KKWPGWPG VFR+++P KVG+IIGRKGE IKK CE+++ARIK+LDGP
Sbjct: 91 DSLPVEADKKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGV 150
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKRV-------SGLPENDVDAKASGAAFCSVRL 173
P+R V+IS K+EP+AP+SPAMD RV+KR+ SG PE ++ + RL
Sbjct: 151 PERTVMISAKDEPDAPISPAMDGLFRVYKRITDGSDGDSGQPERNI------SNVGPTRL 204
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA 233
LVP++QA +LIGKQG+ IKSIQ++S + VR++ + P D+R+VE+QGE V KA
Sbjct: 205 LVPASQAGSLIGKQGATIKSIQDSSKSIVRIV--ETLPLVALNDDRVVEIQGEPVGVQKA 262
Query: 234 LEAVVGHLRKFLVDQGVLPLFE---KTYNASISQERQVETWADKSSLHAATQSAI----- 285
LE++ HLRKFLVD+ VLPLFE K +NA Q S +
Sbjct: 263 LESIASHLRKFLVDRSVLPLFEGQMKMHNAQREQAMAAPQPWGPPQPWGPPPSHLPPGGP 322
Query: 286 ----STEYTPSTRRESLF-------LEREPQLESRYRLSGISIYGQDPALSTIRSSALGR 334
++ P +++ + +E++P GIS YG++ T S++ +
Sbjct: 323 GYGGHPQFMPPRPQDNYYPPPDVPSMEKQPHY-------GISAYGRE--APTGVSASGNQ 373
Query: 335 ASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKG 394
+ +Q+T MQIP+SYA+ +IG G SI IRR SGA +T+QESRG P E+TVEI G
Sbjct: 374 PPSHVASQVTHNMQIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTVEIIG 433
Query: 395 TSSQVQLAQQLIQEYMNNHKE-----SITSSYGQIDTGYRPSYPQLGNSSYPS--SSLST 447
++SQVQ AQQL+Q +M + + +D Y SYP +SY S S
Sbjct: 434 SASQVQTAQQLVQNFMAEAPQGPPPPASNPPAPAVDPSYG-SYPPPYGASYGSAASGAGP 492
Query: 448 QPYGGYGSSGVGGYTSY 464
P+ G GS G Y SY
Sbjct: 493 APHNG-GSYGGTTYPSY 508
>gi|297833144|ref|XP_002884454.1| hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp.
lyrata]
gi|297330294|gb|EFH60713.1| hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp.
lyrata]
Length = 568
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 184/416 (44%), Positives = 250/416 (60%), Gaps = 37/416 (8%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVL 126
EEK+WPGWPG VFRM+VP KVGSIIGRKG++IKK E+TRARIK+LDGP + +R V+
Sbjct: 167 EEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVM 226
Query: 127 ISGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIG 185
+SGKEEPE+ + P+MD +RV R V GL + ++A A+ S RLLVP++QA +LIG
Sbjct: 227 VSGKEEPESSLPPSMDGLLRVHMRIVDGL--DGEPSQAPPASKVSTRLLVPASQAGSLIG 284
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
KQG +K+IQE S VRVL +++ P + +D+R+VE+ GE V KALE + HLRKFL
Sbjct: 285 KQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHKALELIASHLRKFL 344
Query: 246 VDQGVLPLFEKTYNASISQERQV----ETWADKSSLHAATQSA------ISTEYTPSTRR 295
VD+ ++P FE Q + + W HA + P R
Sbjct: 345 VDRSIIPFFENQMQKPTRQMDHMPAPHQAWGPPQG-HAPSVGGGGYGHNPPPYMQPPPRH 403
Query: 296 ESLFLE---REPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVT-QITQTMQIPI 351
+S + R+P +E + GIS YG++P ++ SSA P+V Q+TQ MQIP+
Sbjct: 404 DSYYPPPEMRQPPMEKQPH-QGISAYGREPPMNVHVSSAP-----PMVAQQVTQQMQIPL 457
Query: 352 SYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMN 411
SYA+ +IG G++I RR SGA +T+QE+RG+P E+TVE+ GT SQVQ A QLIQ +M
Sbjct: 458 SYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAMQLIQNFM- 516
Query: 412 NHKESITSSYGQIDT------GYRPSYPQLGNSSYPSSSLSTQPYGGYGSSGVGGY 461
E+ + Q T GY P Y G S Y ++ T P GGY + GY
Sbjct: 517 --AEAGAPAPAQPQTVAPEQQGYNP-YATHG-SVY--AAAPTNPPGGYATDYSSGY 566
>gi|168018585|ref|XP_001761826.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686881|gb|EDQ73267.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 355
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 170/349 (48%), Positives = 234/349 (67%), Gaps = 15/349 (4%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
KKW GWPG VFR+IVPV KVG IIGRKGE +K+ CE+TR+RIK+L+G + +RIV++S
Sbjct: 1 KKWAGWPGDNVFRLIVPVQKVGGIIGRKGEFVKRMCEETRSRIKILEGVPGTAERIVMVS 60
Query: 129 GKEEPEAPVSPAMDAAVRVFKRV-SGLPENDVDAK-ASGAAFCSVRLLVPSTQAINLIGK 186
+E+PEA +SPAM+ +RV +RV G DA+ A G A S RLLV +TQA +LIG+
Sbjct: 61 AREDPEAAISPAMEGLLRVHRRVIEGAEPESADAEIAPGGAPVSSRLLVAATQAGSLIGR 120
Query: 187 QGSLIKSIQENSGASVRVL-SADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
QG+ IKSIQ++SGA+VRVL +A+E P D+R+VE+ GE V +A E VV HLRKFL
Sbjct: 121 QGATIKSIQDSSGATVRVLPAAEELPLCALADDRVVEVTGEPRNVQRATELVVAHLRKFL 180
Query: 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRR----ESLFLE 301
VD+ VLPLFE N +++ + ++ A + ++TQ Y+ + L
Sbjct: 181 VDRSVLPLFE--LNRAVANQSNQQSTASQWQQPSSTQQQQPPNYSSNDSSYYGAAELPHH 238
Query: 302 REPQLESR---YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
+PQ +S G+S+YG+DP T+ + + P++TQ+TQ MQIP+SYA+ II
Sbjct: 239 SQPQQQSHDLANHHHGLSLYGRDP---TLGGTIVPPTPAPVITQVTQHMQIPLSYADAII 295
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
G G +I +RRTSGA IT+QE+R +P E+TVEI G++SQVQ AQQLIQ
Sbjct: 296 GGAGANISYMRRTSGATITIQETRSVPGEMTVEIHGSASQVQTAQQLIQ 344
>gi|61661324|gb|AAX51268.1| FLK [Arabidopsis thaliana]
gi|61661326|gb|AAX51269.1| FLK [Arabidopsis thaliana]
Length = 577
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 187/425 (44%), Positives = 253/425 (59%), Gaps = 43/425 (10%)
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
DA EEK+WPGWPG VFRM+VP KVGSIIGRKG++IKK E+TRARIK+LDGP +
Sbjct: 170 DATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGT 229
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDAKASGA---AFCSVRLLVP 176
+R V++SGKEEPE+ + P+MD +RV R V GL D +AS A + S RLLVP
Sbjct: 230 TERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGL-----DGEASQAPPPSKVSTRLLVP 284
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
++QA +LIGKQG +K+IQE S VRVL +++ P + +D+R+VE+ GE V +ALE
Sbjct: 285 ASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALEL 344
Query: 237 VVGHLRKFLVDQGVLPLFEKTYNASISQERQV----ETWADKSSLHAATQSA------IS 286
+ HLRKFLVD+ ++P FE Q + ++W HA +
Sbjct: 345 IASHLRKFLVDRSIIPFFENQMQKPTRQMDHMPPPHQSWGPPQG-HAPSVGGGGYGHNPP 403
Query: 287 TEYTPSTRRESLFLE---REPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVT-Q 342
P R +S + R+P +E + GIS YG++P ++ SSA P+V Q
Sbjct: 404 PYMQPPPRHDSYYPPPEMRQPPMEKQPH-QGISAYGREPPMNVHVSSAP-----PMVAQQ 457
Query: 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
+TQ MQIP+SYA+ +IG G++I RR SGA +T+QE+RG+P E+TVE+ GT SQVQ A
Sbjct: 458 VTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTA 517
Query: 403 QQLIQEYMNNHKESITSSYGQIDT------GYRPSYPQLGNSSYPSSSLSTQPYGGYGSS 456
QLIQ +M E+ + Q T GY P Y G S Y ++ T P GGY +
Sbjct: 518 VQLIQNFM---AEAGAPAPAQPQTVAPEQQGYNP-YATHG-SVY--AAAPTNPPGGYATD 570
Query: 457 GVGGY 461
GY
Sbjct: 571 YSSGY 575
>gi|15229321|ref|NP_187112.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|6175183|gb|AAF04909.1|AC011437_24 putative RNA-binding protein [Arabidopsis thaliana]
gi|17979249|gb|AAL49941.1| AT3g04610/F7O18_9 [Arabidopsis thaliana]
gi|332640585|gb|AEE74106.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 577
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 187/425 (44%), Positives = 253/425 (59%), Gaps = 43/425 (10%)
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
DA EEK+WPGWPG VFRM+VP KVGSIIGRKG++IKK E+TRARIK+LDGP +
Sbjct: 170 DATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGT 229
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDAKASGA---AFCSVRLLVP 176
+R V++SGKEEPE+ + P+MD +RV R V GL D +AS A + S RLLVP
Sbjct: 230 TERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGL-----DGEASQAPPPSKVSTRLLVP 284
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
++QA +LIGKQG +K+IQE S VRVL +++ P + +D+R+VE+ GE V +ALE
Sbjct: 285 ASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALEL 344
Query: 237 VVGHLRKFLVDQGVLPLFEKTYNASISQERQV----ETWADKSSLHAATQSA------IS 286
+ HLRKFLVD+ ++P FE Q + ++W HA +
Sbjct: 345 IASHLRKFLVDRSIIPFFENQMQKPTRQMDHMPPPHQSWGPPQG-HAPSVGGGGYGHNPP 403
Query: 287 TEYTPSTRRESLFLE---REPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVT-Q 342
P R +S + R+P +E + GIS YG++P ++ SSA P+V Q
Sbjct: 404 PYMQPPPRHDSYYPPPEMRQPPMEKQPH-QGISAYGREPPMNVHVSSAP-----PMVAQQ 457
Query: 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
+TQ MQIP+SYA+ +IG G++I RR SGA +T+QE+RG+P E+TVE+ GT SQVQ A
Sbjct: 458 VTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTA 517
Query: 403 QQLIQEYMNNHKESITSSYGQIDT------GYRPSYPQLGNSSYPSSSLSTQPYGGYGSS 456
QLIQ +M E+ + Q T GY P Y G S Y ++ T P GGY +
Sbjct: 518 VQLIQNFM---AEAGAPAPAQPQTVAPEQQGYNP-YATHG-SVY--AAAPTNPPGGYATD 570
Query: 457 GVGGY 461
GY
Sbjct: 571 YSSGY 575
>gi|356572245|ref|XP_003554280.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 528
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 164/359 (45%), Positives = 223/359 (62%), Gaps = 17/359 (4%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVL 126
E KKWPGWPG VFRM+VPV KVGSIIGRKGE IKK E+T+ARIK+LDGP +R V+
Sbjct: 114 EIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVM 173
Query: 127 ISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGK 186
+S KEEP+ P+ PA+D +RV K+V + + D+ + RLLV TQA +LIGK
Sbjct: 174 VSAKEEPDCPIPPAVDGLLRVHKQVINVDRDLADSALAAGRSVVTRLLVADTQAGSLIGK 233
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
QGS IKSIQ+ SG ++RVL ++ P + D+ IVE+QGE+A V KA+E + HLRKFLV
Sbjct: 234 QGSTIKSIQDGSGCTIRVLGSENLPIFALRDDSIVEIQGESAGVHKAVELIAVHLRKFLV 293
Query: 247 DQGVLPLFEKTYNASISQERQ----VETWA---------DKSSLHAATQSAISTEYT-PS 292
D+ ++ +FE S + Q + W A + +Y PS
Sbjct: 294 DRSIVGVFETQMQMSDVRVNQNLPPHQNWGPPPQGFPAPAGGGGGGGPAFAPNHQYMPPS 353
Query: 293 TRRESLFLERE-PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPI 351
+S + E P ++ Y +D ++ SSA + S +VT++TQ MQIP+
Sbjct: 354 HHYDSYYPPTELPPMDKHLHQGPPPAYARDASMGIHSSSAQPQQS--VVTKVTQHMQIPL 411
Query: 352 SYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+YA+ +IG GT+I IRR SGA IT+QE+RG+P E+TVEI GTSSQ+Q AQQL+Q +M
Sbjct: 412 TYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEISGTSSQIQAAQQLVQNFM 470
>gi|225463940|ref|XP_002269249.1| PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera]
Length = 442
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 184/417 (44%), Positives = 241/417 (57%), Gaps = 37/417 (8%)
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
D+A EK+WPGWPG VFRM+VP KVGSIIGRKGE IKK E+TRARIK+LDGP +
Sbjct: 31 DSAIGGGEKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGT 90
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQA 180
+R V++S KEEP++ + PAMD ++V KR+ E D G S RLLV ++QA
Sbjct: 91 AERAVMVSAKEEPDSSLPPAMDGLLKVHKRIVDGLEGDSSHMPPGGK-VSTRLLVAASQA 149
Query: 181 INLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGH 240
+LIGKQG +KSIQE S VRVL A++ P + +D+R+VE+ GE V KA+E + H
Sbjct: 150 GSLIGKQGGTVKSIQEASNCIVRVLGAEDLPIFALQDDRVVEVVGEPIGVHKAVELIASH 209
Query: 241 LRKFLVDQGVLPLFE---KTYNASISQERQVETWADKSSL--HAATQSAISTEYTPSTRR 295
LRKFLVD+ V+PLFE + N I + W L +A+
Sbjct: 210 LRKFLVDRSVIPLFEMQMQMSNPPIEHMPPHQPWGPPQGLPPNASGGPGFGPNPPYMPPP 269
Query: 296 ESL-----------FLEREPQLESRYRLSGISIYGQD-PALSTIRSSALGRASGPIVTQI 343
L +E++P GIS YG++ P SSA S ++TQ+
Sbjct: 270 RQLDSYYPPPELPPPVEKQPH-------QGISAYGREVPMGGHAPSSAQPAPS--MITQV 320
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
TQ MQIP+SYA+ +IG G SI IRR SGA +T+QE+RG+P E+TVEI GT+SQVQ AQ
Sbjct: 321 TQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQETRGVPGEMTVEINGTASQVQAAQ 380
Query: 404 QLIQEYMNNHKESITSSY-GQIDTGYRPSYPQLGN-----SSYPSSSLSTQPYGGYG 454
QLIQ +M + G D GY SY G+ +S P+ + T GGYG
Sbjct: 381 QLIQNFMAEAAAPAQAQAGGSADQGYN-SYAAHGSMYASPASNPAHASHT---GGYG 433
>gi|356504987|ref|XP_003521274.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 529
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 174/399 (43%), Positives = 241/399 (60%), Gaps = 19/399 (4%)
Query: 26 TESPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVP 85
T+SP E G+ + + DS L Q + D+ E KKWPGWPG VFRM+VP
Sbjct: 77 TDSPQKEEHVEEGHGAGDV--PEDFDSLLKQESEIDSKGN-EIKKWPGWPGENVFRMLVP 133
Query: 86 VLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAV 145
V KVGSIIGRKGE IKK E+T+ARIK+LDGP +R V++S KEEP+ P+ PA+D +
Sbjct: 134 VQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRPIPPAIDGLL 193
Query: 146 RVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL 205
RV K+V + + VD+ + RLLV TQA +LIGKQGS IKSIQ+ SG ++RVL
Sbjct: 194 RVHKQVINVDRDLVDSALAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVL 253
Query: 206 SADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE-KTYNASISQ 264
++ P + D+ IVE+QGE+A V KA+E + HLRKFLVD+ ++ +FE + +
Sbjct: 254 GSENLPVFALRDDSIVEIQGESAGVHKAVELIAVHLRKFLVDRSIVGVFETQMQRPDVRV 313
Query: 265 ERQV---ETWA--------DKSSLHAATQSAISTEYT-PSTRRESLFLERE-PQLESRYR 311
+ V + W A + +Y PS +S + E P ++
Sbjct: 314 NQNVPPHQNWGPPPQGFPAPAGGGGGGPAFAPNHQYMPPSHHYDSYYPPTELPPMDKHLH 373
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
Y +D ++ SSA + S +VT++TQ MQIP++YA+ +IG GT+I IRR
Sbjct: 374 QGPPPAYAKDASMGIHSSSAPPQQS--VVTKVTQHMQIPLTYADAVIGASGTNISYIRRA 431
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
SGA IT+QE+RG+P E+TVEI GTSSQ+Q AQQL+Q +M
Sbjct: 432 SGASITIQETRGVPGEMTVEISGTSSQIQAAQQLVQNFM 470
>gi|449442959|ref|XP_004139248.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 483
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 182/438 (41%), Positives = 251/438 (57%), Gaps = 38/438 (8%)
Query: 44 TEHTTESDSALPQSTG-PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKK 102
EH E+ + P+ D V EKKWPGWPG VFRM+VP KVGSIIGRKGE IKK
Sbjct: 50 NEHIPETLESEPKQVHIEDPLTVVSEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKK 109
Query: 103 TCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDA 161
E+TRARIK+LDGP + +R V++S K+EP++ PA+D +RV KR V GL ++ A
Sbjct: 110 IVEETRARIKILDGPPGTAERAVMVSAKDEPDSAFPPAVDGLLRVHKRIVDGLEGDNAHA 169
Query: 162 KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+G+ S RLLV ++QA +LIGKQG +KSIQE S VRVL +++ P + +D+R+V
Sbjct: 170 PNAGSK-VSTRLLVAASQAGSLIGKQGGTVKSIQEESNCIVRVLGSEDLPVFALQDDRVV 228
Query: 222 EMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAAT 281
E+ G+ A V KA+E + HLRKFLVD+ ++P+FE S Q Q
Sbjct: 229 EVLGDPAGVHKAVELIASHLRKFLVDRSIIPVFEMNMQMSNPQMDQHMPPPPHQPWGPPQ 288
Query: 282 QSAIST----------------------EYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
+ Y P +++ +E++P GIS YG
Sbjct: 289 GMPPNAGGGPGFGPNPPQYMPPPPRQFDNYYPPAEMQAV-MEKQPH-------HGISAYG 340
Query: 320 QDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ 379
++ + + +++ +++ IVTQ TQ MQIP+S+A+ +IG G SI IRR SGA +T+Q
Sbjct: 341 REAPMG-VHAASNAQSAPSIVTQTTQQMQIPLSFADAVIGTAGASISYIRRASGATVTIQ 399
Query: 380 ESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYG-QIDTGYRPSYPQLGNS 438
E+RG+P E+TVE+ GT+SQVQ AQQLIQ +M G D GY SY G S
Sbjct: 400 ETRGVPGEMTVEMSGTASQVQAAQQLIQNFMAGAGAPAQPQAGVSTDQGYN-SYAAHG-S 457
Query: 439 SYPSSSLSTQPY-GGYGS 455
Y S + + GGYGS
Sbjct: 458 VYASPPANPAAHAGGYGS 475
>gi|224123476|ref|XP_002319087.1| predicted protein [Populus trichocarpa]
gi|222857463|gb|EEE95010.1| predicted protein [Populus trichocarpa]
Length = 392
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 174/385 (45%), Positives = 238/385 (61%), Gaps = 12/385 (3%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAM 141
M+VP KVGSIIGRKGE IKK E+TRARIK+LDGP + +R V++S KEEP++ + PAM
Sbjct: 1 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMVSAKEEPDSSLPPAM 60
Query: 142 DAAVRVFKRV-SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
D +RV KR+ GL + + + A S RLLVP++QA +LIGKQG +KSIQE S
Sbjct: 61 DGLLRVHKRIIDGLDSDSSNTPPTSGAKVSTRLLVPASQAGSLIGKQGGTVKSIQEASTC 120
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE---KT 257
VRVL A++ P + +D+R+VE+ GEAA V KA+E + HLRKFLVD+ ++PLFE +
Sbjct: 121 IVRVLGAEDLPVFALQDDRVVEVLGEAAGVHKAVELIASHLRKFLVDRSIIPLFEMQMQM 180
Query: 258 YNASISQERQVETWADKSSL---HAATQS-AISTEYTPSTRRESLFL--EREPQLESRYR 311
N S+ Q ++W L H + +Y P R+ + P L +
Sbjct: 181 SNPSMEQMPPHQSWGPPQPLPPNHGGGPGYGQNPQYMPPPRQLDNYYPPADMPPLMEKQP 240
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
GIS YG++ + + +S+ +A+ ++TQITQ MQIP+SYA+ +IG G SI IRR
Sbjct: 241 HQGISAYGREAPMGS-HASSNAQAAPSMITQITQQMQIPLSYADAVIGTAGASISYIRRA 299
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH-KESITSSYGQIDTGYRP 430
SGA +T+QE+RG+P +TVEI GT+SQVQ AQQLIQ +M + + G D GY P
Sbjct: 300 SGATVTIQETRGVPGAMTVEISGTASQVQTAQQLIQNFMAEAGAPAQPQTGGAADQGYNP 359
Query: 431 SYPQLGNSSYPSSSLSTQPYGGYGS 455
+S PS+ T GGYGS
Sbjct: 360 YSHSSVYASPPSNPEHTGHAGGYGS 384
>gi|296087899|emb|CBI35182.3| unnamed protein product [Vitis vinifera]
Length = 511
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 184/417 (44%), Positives = 241/417 (57%), Gaps = 37/417 (8%)
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
D+A EK+WPGWPG VFRM+VP KVGSIIGRKGE IKK E+TRARIK+LDGP +
Sbjct: 100 DSAIGGGEKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGT 159
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQA 180
+R V++S KEEP++ + PAMD ++V KR+ E D G S RLLV ++QA
Sbjct: 160 AERAVMVSAKEEPDSSLPPAMDGLLKVHKRIVDGLEGDSSHMPPGGK-VSTRLLVAASQA 218
Query: 181 INLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGH 240
+LIGKQG +KSIQE S VRVL A++ P + +D+R+VE+ GE V KA+E + H
Sbjct: 219 GSLIGKQGGTVKSIQEASNCIVRVLGAEDLPIFALQDDRVVEVVGEPIGVHKAVELIASH 278
Query: 241 LRKFLVDQGVLPLFE---KTYNASISQERQVETWADKSSL--HAATQSAISTEYTPSTRR 295
LRKFLVD+ V+PLFE + N I + W L +A+
Sbjct: 279 LRKFLVDRSVIPLFEMQMQMSNPPIEHMPPHQPWGPPQGLPPNASGGPGFGPNPPYMPPP 338
Query: 296 ESL-----------FLEREPQLESRYRLSGISIYGQD-PALSTIRSSALGRASGPIVTQI 343
L +E++P GIS YG++ P SSA S ++TQ+
Sbjct: 339 RQLDSYYPPPELPPPVEKQPH-------QGISAYGREVPMGGHAPSSAQPAPS--MITQV 389
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
TQ MQIP+SYA+ +IG G SI IRR SGA +T+QE+RG+P E+TVEI GT+SQVQ AQ
Sbjct: 390 TQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQETRGVPGEMTVEINGTASQVQAAQ 449
Query: 404 QLIQEYMNNHKESITSSY-GQIDTGYRPSYPQLGN-----SSYPSSSLSTQPYGGYG 454
QLIQ +M + G D GY SY G+ +S P+ + T GGYG
Sbjct: 450 QLIQNFMAEAAAPAQAQAGGSADQGYN-SYAAHGSMYASPASNPAHASHT---GGYG 502
>gi|225429818|ref|XP_002280789.1| PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera]
Length = 420
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 258/428 (60%), Gaps = 36/428 (8%)
Query: 57 STGPDAAAVPEEK---KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV 113
S P AA+ K KWPGWPG FR+IVP VGSIIGR+G++IK+ E T ARI V
Sbjct: 3 SVDPTAASASGRKPAEKWPGWPGQNAFRLIVPGSAVGSIIGREGKIIKRISEGTGARIHV 62
Query: 114 LDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGL---PENDVDAKASGAAFCS 170
+ P + D IVLIS KE+P +SPAM+A + VFKRV+GL N + +KAS S
Sbjct: 63 ISLPAGTTDCIVLISAKEQPHLRLSPAMEAVIEVFKRVTGLYPIDGNGMCSKASEVKLSS 122
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
V LV +QA+++IGK+GS +++I+E+SG +V +LS PFYV+ DERI+++QG+ KV
Sbjct: 123 VTFLVGYSQALSIIGKEGSRVRAIEESSGTTVGILS--RVPFYVSPDERIIKIQGQVLKV 180
Query: 231 LKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKS-SLHAAT---QSAIS 286
+ A+EAV+ HLR +LVD V+P F + ISQ AD+S SLH +T Q
Sbjct: 181 MAAMEAVLYHLRLYLVDSSVIPAFSEKCKTGISQ-------ADQSLSLHHSTPAHQPGAD 233
Query: 287 TEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQT 346
+ Y+ L E ++E++ S S+Y Q+P L + RA+ P Q T+
Sbjct: 234 SMYSLP------LLGHEAKVEAKIPSSYSSLYAQEPVLGGLPLRRSDRAAAP--AQRTER 285
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
++IP S A+DIIG+ G +I++IRRTSG+IIT++E R LPDE +E++GT+SQ+Q AQQLI
Sbjct: 286 IKIPFSAAKDIIGIAGETIDHIRRTSGSIITIEEDRSLPDEYILEVRGTTSQLQTAQQLI 345
Query: 407 QEYMNNHKE--SITSSYGQIDTGYRPSYPQLGNSSYPSSSLS------TQPYGGYGSSGV 458
+E + +H + S Y +D G S Q ++P S S +QP G G S
Sbjct: 346 EELLESHHQPGREGSIYDNMDAGLS-SNSQFALPTHPLSPFSPQYRFPSQPSGENGISSA 404
Query: 459 GGYTSYRL 466
G +T R
Sbjct: 405 GEHTGSRF 412
>gi|449531912|ref|XP_004172929.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 453
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 237/401 (59%), Gaps = 34/401 (8%)
Query: 44 TEHTTESDSALPQSTG-PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKK 102
EH E+ + P+ D V EKKWPGWPG VFRM+VP KVGSIIGRKGE IKK
Sbjct: 50 NEHIPETLESEPKQVHIEDPLTVVSEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKK 109
Query: 103 TCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDA 161
E+TRARIK+LDGP + +R V++S K+EP++ PA+D +RV KR V GL ++ A
Sbjct: 110 IVEETRARIKILDGPPGTAERAVMVSAKDEPDSAFPPAVDGLLRVHKRIVDGLEGDNAHA 169
Query: 162 KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+G+ S RLLV ++QA +LIGKQG +KSIQE S VRVL +++ P + +D+R+V
Sbjct: 170 PNAGSK-VSTRLLVAASQAGSLIGKQGGTVKSIQEESNCIVRVLGSEDLPVFALQDDRVV 228
Query: 222 EMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAAT 281
E+ G+ A V KA+E + HLRKFLVD+ ++P+FE S Q Q
Sbjct: 229 EVLGDPAGVHKAVELIASHLRKFLVDRSIIPVFEMNMQMSNPQMDQHMPPPPHQPWGPPQ 288
Query: 282 QSAIST----------------------EYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
+ Y P +++ +E++P GIS YG
Sbjct: 289 GMPPNAGGGPGFGPNPPQYMPPPPRQFDNYYPPAEMQAV-MEKQPH-------HGISAYG 340
Query: 320 QDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ 379
++ + + +++ +++ IVTQ TQ MQIP+S+A+ +IG G SI IRR SGA +T+Q
Sbjct: 341 REAPMG-VHAASNAQSAPSIVTQTTQQMQIPLSFADAVIGTAGASISYIRRASGATVTIQ 399
Query: 380 ESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
E+RG+P E+TVE+ GT+SQVQ AQQLIQ + + TSS
Sbjct: 400 ETRGVPGEMTVEMSGTASQVQAAQQLIQAIIFSSPFDFTSS 440
>gi|357121091|ref|XP_003562255.1| PREDICTED: poly(rC)-binding protein 1-like [Brachypodium
distachyon]
Length = 518
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 157/362 (43%), Positives = 224/362 (61%), Gaps = 30/362 (8%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
+K+WPGWPG VFR++VPV KVG+IIGRKGE IK+ CE+++ARIK+LDGP P+R V+I
Sbjct: 104 DKRWPGWPGDSVFRILVPVHKVGAIIGRKGEFIKRMCEESKARIKILDGPPGVPERAVMI 163
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASG-AAFCSVRLLVPSTQAINLIGK 186
S K+EP+ +SPAMD +R+ KR++ + + G RLLVP++QA +LIGK
Sbjct: 164 SAKDEPDEQISPAMDGLLRIHKRIADGSDGEFGQTQRGTGTMGPTRLLVPASQAGSLIGK 223
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
QG+ IKSIQ++S A VR++ + P D+R+VE+QGE V KA+E + HLRKFLV
Sbjct: 224 QGATIKSIQDSSKAVVRIV--ENVPPVALNDDRVVEIQGEPLSVQKAVELIASHLRKFLV 281
Query: 247 DQGVLPLFEKTYNA-SISQERQVETWADKSSLHAATQS----------AISTEYTPSTRR 295
D VLPLFE+ S+ +E+ + A + ++ P +
Sbjct: 282 DHSVLPLFEQQMKMHSMPREQPMPAPQQWGPPQPWGPPPNHPPGGPGYAGNPQFMPPRPQ 341
Query: 296 ESLF-------LEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQ 348
++ + +E++P GIS YG++ A S + +S + + +Q+T MQ
Sbjct: 342 DNYYPPPDVPPMEKQPHY-------GISAYGRE-APSGVSASG-NQPPSHVASQVTHNMQ 392
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQE 408
IP+SYA+ +IG G SI IRR SGA +T+QESRG P E+ VEI G++SQVQ AQQLIQ
Sbjct: 393 IPLSYADAVIGAAGASISYIRRHSGAAVTIQESRGAPGEMNVEIIGSASQVQTAQQLIQN 452
Query: 409 YM 410
+M
Sbjct: 453 FM 454
>gi|357157425|ref|XP_003577794.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 527
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 167/400 (41%), Positives = 234/400 (58%), Gaps = 42/400 (10%)
Query: 42 ENTEHTTESDSALPQSTGPD------------AAAVPEEKKWPGWPGHCVFRMIVPVLKV 89
EN H + D A+P P A E+KKWPGWPG VFR++VPV KV
Sbjct: 78 ENMGHELKEDQAIPSHEAPADVDGGEAEAEQLANVETEDKKWPGWPGESVFRVLVPVQKV 137
Query: 90 GSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFK 149
G++IGRKGE IKK CE++RARIK+LDGP P+R V+IS K+EP+A VSPA+D +RV K
Sbjct: 138 GAVIGRKGEFIKKMCEESRARIKILDGPPGVPERAVMISAKDEPDALVSPAVDGLLRVHK 197
Query: 150 RVSGLPENDVDAKASGAA-FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSAD 208
R++ +++ D GA RLLVP++QA +LIGKQG+ IKSIQ+ S ++R+L +
Sbjct: 198 RITDGLDSETDQPQRGAGPVGPTRLLVPASQAGSLIGKQGATIKSIQDASKCALRIL--E 255
Query: 209 EAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE---KTYNASISQE 265
P D+R+VE+QGE V KA+E + HLRKFLVD+ VLPLFE K +N Q
Sbjct: 256 NVPPVALNDDRVVEIQGEPLDVHKAVELIASHLRKFLVDRSVLPLFEAQMKVHNVPREQP 315
Query: 266 RQVETWADKSSLHA--------ATQSAISTEYTPSTRRESLF-------LEREPQLESRY 310
+ + + P +++ + +E++PQ
Sbjct: 316 MPAPQPWGPPPQWSHPPNIPPPGPGYGGNPHFMPPRPQDNYYPPPDVHPVEKQPQY---- 371
Query: 311 RLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRR 370
GIS YG+D S + + P +QITQT+Q+P+SYA+ +IG G SI IR+
Sbjct: 372 ---GISSYGRDAPPSGAPPVSGNQHLPPGSSQITQTLQVPLSYADAVIGAAGASISYIRK 428
Query: 371 TSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
SGA I++QE G+P E+ +E+ G++SQVQ AQQLI+ +M
Sbjct: 429 HSGATISIQE--GVPGEMNLEMTGSASQVQTAQQLIKNFM 466
>gi|226497902|ref|NP_001151605.1| nucleic acid binding protein [Zea mays]
gi|195648058|gb|ACG43497.1| nucleic acid binding protein [Zea mays]
Length = 524
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 223/356 (62%), Gaps = 18/356 (5%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVL 126
++ WPGWPG VFR++VP KVG+IIGRKGE IKK CE+T+ARIK+LDGP P+R V+
Sbjct: 110 DDNIWPGWPGESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVM 169
Query: 127 ISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND-VDAKASGAAFCSVRLLVPSTQAINLIG 185
IS K+EP+AP+SPAMD +RV KR++ + + + S RLLVPS+QA +LIG
Sbjct: 170 ISAKDEPDAPLSPAMDGLLRVHKRITDSSDGESSQPQRSAGNIGPTRLLVPSSQAGSLIG 229
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
KQG+ IKSIQ++S + VR++ + P D+R+VE+QGE V KA+E + HLRKFL
Sbjct: 230 KQGATIKSIQDSSKSIVRIV--ENVPPVALNDDRVVEIQGEPLGVQKAVELISSHLRKFL 287
Query: 246 VDQGVLPLFEKTYNA-SISQERQV---------ETW-ADKSSLHAATQSAISTEYTPSTR 294
VD+ VLPLFE + +E+ V +TW + + ++ P
Sbjct: 288 VDRSVLPLFEAHMKMHGMPREQPVPPPQHWGPPQTWIRPPNIPPGGPGFGGNPQFMPPRP 347
Query: 295 RESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYA 354
++S + + + + Y GIS YG++ A + S+ + +Q+ M IP++YA
Sbjct: 348 QDSYYPPPDVEKQPHY---GISAYGRE-APPSGASATGNQPPSHAGSQVAHDMHIPLAYA 403
Query: 355 EDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ +IG G SI IRR SGA +T+QESRG P ++TVEI GT++QVQ AQQLIQ +M
Sbjct: 404 DAVIGAAGASISYIRRHSGATVTIQESRGAPGDMTVEITGTAAQVQTAQQLIQNFM 459
>gi|356536806|ref|XP_003536925.1| PREDICTED: poly(rC)-binding protein 1-like [Glycine max]
Length = 561
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 168/408 (41%), Positives = 234/408 (57%), Gaps = 28/408 (6%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVL 126
E KKWPGWPG VFRM+VPV KVGSIIGRKGE I+K EDT+ARIK+LDGP + +R V+
Sbjct: 151 EVKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEDTKARIKILDGPPGTSERAVM 210
Query: 127 ISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGK 186
+S KEEP+ + PA+D +RV K+V + + D+ + RLLV TQA +LIGK
Sbjct: 211 VSAKEEPDCSIPPAVDGLLRVHKQVVNVDPHPADSASGAVRPVVTRLLVADTQAGSLIGK 270
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
QGS IKS Q+ +G ++R+L ++ P + D+ IVE+QGE++ V KA+E V HLRKFLV
Sbjct: 271 QGSTIKSFQDATGCNIRILGSEHLPVFALRDDSIVEIQGESSGVHKAVELVAIHLRKFLV 330
Query: 247 DQGVLPLFEKTY-------NASISQERQVETWA-------DKSSLHAATQSAISTEYTPS 292
D+ ++ +FE N ++ + W +T+Y P
Sbjct: 331 DRSIVGVFETQMQRPDVRANQNVPPGPPHQPWGPPQGFPAPGPGSGGGPAFPPNTQYMPP 390
Query: 293 TRRESLFLEREPQLESRYRLSGISIY-GQDPALSTIRSSALGRASGPIVTQ--ITQTMQI 349
+ + P + LS + + Q P + +R ++G S Q +TQ MQI
Sbjct: 391 SHNYDNYY---PPAD----LSPMDKHLHQGPPPAYVRDVSMGIHSSSAQAQQSVTQHMQI 443
Query: 350 PISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEY 409
P+SYA+ +IG G +I IRR SGA IT+QE+RG+P E+TVEI GT+SQ+Q AQQL+Q +
Sbjct: 444 PLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNF 503
Query: 410 MNNHKESITSSY-GQIDTGYRPSYPQLGNSSYPSSSLSTQPYGGYGSS 456
M + G I+ GY SYP N Y S S + G+ S
Sbjct: 504 MAEAASAAQDHMGGSINQGYN-SYPT--NPVYASPPSSAAGHAGHAPS 548
>gi|413933627|gb|AFW68178.1| nucleic acid binding protein [Zea mays]
Length = 637
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 177/426 (41%), Positives = 241/426 (56%), Gaps = 52/426 (12%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVL 126
++ KWPGWPG VFR++VP KVG+IIGRKGE IKK CE+T+ARIK+LDGP P+R V+
Sbjct: 220 DDNKWPGWPGESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVM 279
Query: 127 ISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND-VDAKASGAAFCSVRLLVPSTQAINLIG 185
IS K+EP+AP+SPAMD +RV KR++ + + + S RLLVPS+QA +LIG
Sbjct: 280 ISAKDEPDAPLSPAMDGLLRVHKRITDSSDGESSQPQRSAGNIGPTRLLVPSSQAGSLIG 339
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
KQG+ IKSIQ++S + VR++ + P D+R+VE+QGE V +A+E + HLRKFL
Sbjct: 340 KQGATIKSIQDSSKSIVRIV--ENVPPVALNDDRVVEIQGEPLGVQEAVELISSHLRKFL 397
Query: 246 VDQGVLPLFEKTYNAS-ISQERQV---------ETW--------------ADKSSLHAAT 281
VD+ VLPLFE + +E+ V +TW + +H
Sbjct: 398 VDRSVLPLFEAHMKMHGMPREQPVPPPQHWGPPQTWIRPPNIPPGGPGFGGNPQFMHPRP 457
Query: 282 QSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVT 341
Q + Y PS + +E++P GIS YG++ A + S+ + +
Sbjct: 458 QDS----YYPSP--DVPHMEKQPHY-------GISAYGRE-APPSGASATGNQPPSHAGS 503
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQL 401
Q+ M IP++YA+ +IG G SI IRR SGA +T+QESRG P E+TVEI GT++QVQ
Sbjct: 504 QVAHDMHIPLAYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTVEITGTAAQVQT 563
Query: 402 AQQLIQEYMNNHKESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPYGG---YGSSGV 458
AQQLIQ +M + P P G SYP PYG YGSS
Sbjct: 564 AQQLIQNFMAEAAPPPPGPAPASNPPAPPVDPSYG--SYPP------PYGAAPSYGSSAA 615
Query: 459 GGYTSY 464
G Y
Sbjct: 616 AGPPQY 621
>gi|326505208|dbj|BAK02991.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 513
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/365 (43%), Positives = 219/365 (60%), Gaps = 36/365 (9%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVL 126
E+K+WPGWPG VFR++VP KVG+IIGRKGE IKK CE ++ARIK+LDGP +R V+
Sbjct: 103 EDKRWPGWPGDSVFRILVPAQKVGAIIGRKGEFIKKMCEQSKARIKILDGPPGVTERAVI 162
Query: 127 ISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS-VRLLVPSTQAINLIG 185
IS K+EP+ P+SPAMD +R+ KR++ + + GA+ RLLVP++QA +LIG
Sbjct: 163 ISAKDEPDEPISPAMDGLLRIHKRITDGSDGEFGQPQRGASNVGPTRLLVPASQAGSLIG 222
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
KQG+ IKSIQ++S + VR++ + P D+R+VE+QGE V KA+E + HLRKFL
Sbjct: 223 KQGATIKSIQDSSKSVVRIV--ENVPPVALNDDRVVEIQGEPLGVHKAVELIANHLRKFL 280
Query: 246 VDQGVLPLFEKTYNASISQERQVET----WADKSSLHAATQSAI-------STEYTPSTR 294
VD VLPLFE+ Q Q T W + ++ P
Sbjct: 281 VDHSVLPLFEQQMKMHSVQREQPMTAPQHWTPTQPWLPPPNLPPVGPGYGGNPQFMPPRP 340
Query: 295 RESLF-------LEREPQLESRYRLSGISIYGQD--PALSTIRSSALGRASGPIVTQITQ 345
+++ + +E++P GIS YG++ P+ ++ L AS
Sbjct: 341 QDNYYPRPDVPPMEKQPHY-------GISAYGREAPPSGTSGNQPPLHVASQ------VH 387
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQL 405
MQIP+SYA+ +IG G SI IRR SGA +T+QESRG P E+TVEI G++SQVQ AQQL
Sbjct: 388 NMQIPLSYADAVIGAAGASISYIRRQSGAAVTIQESRGAPGEMTVEIIGSASQVQTAQQL 447
Query: 406 IQEYM 410
IQ +M
Sbjct: 448 IQNFM 452
>gi|223947189|gb|ACN27678.1| unknown [Zea mays]
gi|223950255|gb|ACN29211.1| unknown [Zea mays]
gi|414868821|tpg|DAA47378.1| TPA: KH domain containing protein [Zea mays]
Length = 508
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 172/428 (40%), Positives = 243/428 (56%), Gaps = 33/428 (7%)
Query: 38 TIGSENTEHTTESDSALPQSTGPDA------AAVPEEKKWPGWPGHCVFRMIVPVLKVGS 91
++ +E+ + D A P G +A A VP++KKWPGWPG VFR++VP KVG+
Sbjct: 61 SMNNEDVGGQNKVDQATPTEHGEEAGVKQHDATVPDDKKWPGWPGESVFRILVPTTKVGA 120
Query: 92 IIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRV 151
+IGRKG+ IKK CE++RARIKVL+GP + P+R V+IS K+EP+ + PA+D +RV +R+
Sbjct: 121 VIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMISAKDEPDTELPPAVDGLLRVHRRI 180
Query: 152 SGLPENDVDAKASGAAFCS-VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEA 210
+ E + D RLLVP++QA +LIGKQG+ IKSIQ+ S +R++ +
Sbjct: 181 TDGLETETDQPQRATVNTGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRIV--ENV 238
Query: 211 PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE---KTYNASISQERQ 267
P D+R+VE+QGE KA+E + HLRKFLVD+ VLPLFE K +N Q
Sbjct: 239 PPVALNDDRVVEIQGEPHDSHKAVELIASHLRKFLVDRSVLPLFETQIKAHNMHREQPMP 298
Query: 268 VETWADKSSLHAATQSAI-----------STEYTPSTRRESLFLEREPQLESRYRLSGIS 316
+ Y P +E+ + + + GIS
Sbjct: 299 PPQAWGPPPPSPWGHPPPNLPPGGPGYVGNPHYMPPRPQENYYPPPDVPPVEKQPHYGIS 358
Query: 317 IYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAII 376
YG+D A + +A G +Q+T +MQ+P+SYA+ +IG G SI IRR SGA I
Sbjct: 359 SYGRD-APPSAPPGNQNQAHG--SSQVTHSMQVPLSYADAVIGAAGASISYIRRHSGATI 415
Query: 377 TVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM---NNHKESITSSYGQ-IDTGYRPSY 432
++QE G P E+TVEI G++SQVQ AQQLI+ +M + +GQ +DTGY SY
Sbjct: 416 SIQE--GAPGEMTVEITGSASQVQTAQQLIKNFMAEASPQGPPAPGPHGQPVDTGYG-SY 472
Query: 433 PQLGNSSY 440
P G +SY
Sbjct: 473 PPYGGASY 480
>gi|414868822|tpg|DAA47379.1| TPA: hypothetical protein ZEAMMB73_380288 [Zea mays]
Length = 499
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 171/425 (40%), Positives = 240/425 (56%), Gaps = 36/425 (8%)
Query: 38 TIGSENTEHTTESDSALPQSTGPDA------AAVPEEKKWPGWPGHCVFRMIVPVLKVGS 91
++ +E+ + D A P G +A A VP++KKWPGWPG VFR++VP KVG+
Sbjct: 61 SMNNEDVGGQNKVDQATPTEHGEEAGVKQHDATVPDDKKWPGWPGESVFRILVPTTKVGA 120
Query: 92 IIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRV 151
+IGRKG+ IKK CE++RARIKVL+GP + P+R V+IS K+EP+ + PA+D +RV +R+
Sbjct: 121 VIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMISAKDEPDTELPPAVDGLLRVHRRI 180
Query: 152 SGLPENDVDAKASGAAFCS-VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEA 210
+ E + D RLLVP++QA +LIGKQG+ IKSIQ+ S +R++ +
Sbjct: 181 TDGLETETDQPQRATVNTGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRIV--ENV 238
Query: 211 PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE---KTYNASISQERQ 267
P D+R+VE+QGE KA+E + HLRKFLVD+ VLPLFE K +N Q
Sbjct: 239 PPVALNDDRVVEIQGEPHDSHKAVELIASHLRKFLVDRSVLPLFETQIKAHNMHREQPMP 298
Query: 268 VETWADKSSLHAATQSAI-----------STEYTPSTRRESLFLEREPQLESRYRLSGIS 316
+ Y P +E+ + + + GIS
Sbjct: 299 PPQAWGPPPPSPWGHPPPNLPPGGPGYVGNPHYMPPRPQENYYPPPDVPPVEKQPHYGIS 358
Query: 317 IYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAII 376
YG+D A + +A G +Q+T +MQ+P+SYA+ +IG G SI IRR SGA I
Sbjct: 359 SYGRD-APPSAPPGNQNQAHG--SSQVTHSMQVPLSYADAVIGAAGASISYIRRHSGATI 415
Query: 377 TVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQ-IDTGYRPSYPQL 435
++QE G P E+TVEI G++SQVQ AQQLI+ +GQ +DTGY SYP
Sbjct: 416 SIQE--GAPGEMTVEITGSASQVQTAQQLIK------GPPAPGPHGQPVDTGYG-SYPPY 466
Query: 436 GNSSY 440
G +SY
Sbjct: 467 GGASY 471
>gi|226494805|ref|NP_001148654.1| KH domain containing protein [Zea mays]
gi|195621126|gb|ACG32393.1| KH domain containing protein [Zea mays]
Length = 529
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 169/421 (40%), Positives = 239/421 (56%), Gaps = 33/421 (7%)
Query: 38 TIGSENTEHTTESDSALPQSTGPDA------AAVPEEKKWPGWPGHCVFRMIVPVLKVGS 91
++ +E+ + D A P G +A A VP++KKWPGWPG VFR++VP KVG+
Sbjct: 61 SMNNEDVGGQNKVDQATPTEHGEEAGVKQHDATVPDDKKWPGWPGESVFRILVPTTKVGA 120
Query: 92 IIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRV 151
+IGRKG+ IKK CE++RARIKVL+GP + P+R V+IS K+EP+ + PA+D +RV +R+
Sbjct: 121 VIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMISAKDEPDTELPPAVDGLLRVHRRI 180
Query: 152 SGLPENDVDAKASGAAFCS-VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEA 210
+ E + D RLLVP++QA +LIGKQG+ IKSIQ+ S +R++ +
Sbjct: 181 TDGLETETDQPQRATVNTGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRIV--ENV 238
Query: 211 PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE---KTYNASISQERQ 267
P D+R+VE+QGE KA+E + HLRKFLVD+ VLPLFE K +N Q
Sbjct: 239 PPVALNDDRVVEIQGEPHDSHKAVELIASHLRKFLVDRSVLPLFETQIKAHNMHREQPMP 298
Query: 268 VETWADKSSLHAATQSAI-----------STEYTPSTRRESLFLEREPQLESRYRLSGIS 316
+ Y P +E+ + + + GIS
Sbjct: 299 PPQAWGPPPPSPWGHPPPNLPPGGPGYVGNPHYMPPRPQENYYPPPDVPPVEKQPHYGIS 358
Query: 317 IYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAII 376
YG+D A + +A G +Q+T +MQ+P+SYA+ +IG G SI IRR SGA I
Sbjct: 359 SYGRD-APPSAPPGNQNQAHG--SSQVTHSMQVPLSYADAVIGAAGASISYIRRHSGATI 415
Query: 377 TVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM---NNHKESITSSYGQ-IDTGYRPSY 432
++QE G P E+TVEI G++SQVQ AQQLI+ +M + +GQ +DTGY SY
Sbjct: 416 SIQE--GAPGEMTVEITGSASQVQTAQQLIKNFMAEASPQGPPAPGPHGQPVDTGYG-SY 472
Query: 433 P 433
P
Sbjct: 473 P 473
>gi|297735516|emb|CBI17956.3| unnamed protein product [Vitis vinifera]
Length = 433
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 173/414 (41%), Positives = 243/414 (58%), Gaps = 29/414 (7%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
+KWPGWPG VFRM++PV KVG IIGRKGE IKK E+T+ARIK+LDGP + +R V++S
Sbjct: 31 EKWPGWPGENVFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVS 90
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
KEEP+AP++PA+D +RV K + + E+DV + A S RLLV + QA +LIGKQG
Sbjct: 91 AKEEPDAPIAPAIDGLLRVHKCIMDV-ESDVPSAA--GVMVSTRLLVVAAQAGSLIGKQG 147
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
+ IKSIQE S VRVL + P + +++ +VE+QGE A V KA+E + +LRKFLVD+
Sbjct: 148 ATIKSIQEASNCIVRVL-GENLPLFALQNDTVVEIQGEPASVHKAVELIASNLRKFLVDR 206
Query: 249 GVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLES 308
V+ +FE +Q E + S + I+T P +++ QL++
Sbjct: 207 SVIKVFEMEMQKPNTQGN--ENMPPQQSWDPSQVFPINTGGEPGFVPNLQYMQPPYQLDN 264
Query: 309 RYRLSGISIYGQDPALSTIRSSALGRASGP------------IVTQITQTMQIPISYAED 356
Y + Q + GR +G IV +ITQ MQ+P+SYA+
Sbjct: 265 YYPPPAQTPLDQH---HHHQGPPYGRETGAGVSSPSLTPQQSIVNKITQYMQVPLSYADA 321
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+IG G +I +RRTSGA I ++E++G+P E+TVEI G+ SQVQ AQQLIQ +M S
Sbjct: 322 VIGASGVNISYVRRTSGATIAIEETKGVPGEMTVEINGSVSQVQTAQQLIQNFMAEAASS 381
Query: 417 -ITSSYGQIDTGYRPSYPQLG--NSSYPSS---SLSTQPYGGYGSSGVGGYTSY 464
+ + G I GY P +P G ++S PS+ L G YGS G ++ Y
Sbjct: 382 TLNLAGGAISQGYNP-FPTHGAVSTSQPSNVIEHLGPSAGGSYGSV-YGSHSGY 433
>gi|326488325|dbj|BAJ93831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 169/425 (39%), Positives = 242/425 (56%), Gaps = 47/425 (11%)
Query: 62 AAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP 121
A V E+ KWPGWPG VFR++V KVG++IGRKGE IK+ C++++ARIK+LDGP P
Sbjct: 104 ANVVAEDTKWPGWPGESVFRVLVSTQKVGALIGRKGEFIKRMCDESKARIKILDGPPGVP 163
Query: 122 DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS-VRLLVPSTQA 180
+R V+IS K+EP+A V PA+D +RV R++ +++ D GA+ RLLVP++QA
Sbjct: 164 ERAVMISAKDEPDALVPPAIDVLLRVHNRITDGLDSETDQAQKGASPAGPTRLLVPASQA 223
Query: 181 INLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGH 240
+LIGKQG+ IKSIQ+ S ++R+L + P D+R+VE+QGE V KA+E + H
Sbjct: 224 GSLIGKQGTTIKSIQDASKCALRIL--ENVPPVALNDDRVVEIQGEPHDVHKAVELIANH 281
Query: 241 LRKFLVDQGVLPLFE---KTYNASISQERQVETWADKSSLHAATQS--------AISTEY 289
LRKFLVD+ VLPLFE K ++A Q + + + +
Sbjct: 282 LRKFLVDRSVLPLFEMQMKVHSAPREQPMPAPQQWGPPPPWSHPPNIPPSGPGYGGNPHF 341
Query: 290 TPSTRRESLF-------LEREPQLESRYRLSGISIYGQDP---ALSTIRSSALGRASGPI 339
P ++S + +E++P GIS YG+D A T + L S
Sbjct: 342 MPPRPQDSYYPPPNVHHVEKQPHY-------GISSYGRDANPTAAPTSGNQHLSHGS--- 391
Query: 340 VTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQV 399
+Q++Q MQ+P+SYA+ +IG G +I IR+ SGA I++QE G+P E+TVEI G++SQV
Sbjct: 392 -SQLSQKMQVPLSYADAVIGSAGANISYIRKHSGATISIQE--GVPGEMTVEIAGSASQV 448
Query: 400 QLAQQLIQEYM-----NNHKESITSSYGQIDTGYRPSYPQLGNSSY--PSSSLSTQPY-- 450
Q AQQLI+ +M +D+GY SY G SY P P+
Sbjct: 449 QTAQQLIKNFMAEASPQVPPPGPAPPSQPVDSGYN-SYAPYGGPSYATPPGGAGPTPHNG 507
Query: 451 GGYGS 455
GGYG+
Sbjct: 508 GGYGA 512
>gi|357146019|ref|XP_003573848.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 470
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 180/474 (37%), Positives = 264/474 (55%), Gaps = 63/474 (13%)
Query: 15 PEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGW 74
PE P SP TE E P + + +TE + +WPG+
Sbjct: 37 PEEHPPALEPWVPSPETEPEQHPPVPAPTNSASTEEEGEF-------------RPRWPGF 83
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS--SPDRIVLISGKEE 132
PG VFR++V KVG +IGR+GE I++ CE+TRAR++VLD P + +IVLIS EE
Sbjct: 84 PGASVFRLVVAGDKVGGLIGRRGETIRRLCEETRARVRVLD-PADGVAGQQIVLISATEE 142
Query: 133 PEAPVSPAMDAAVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
+A ++PAMDAA+++FK V+ + V AS CS RLLVP QA +LIGKQG +
Sbjct: 143 TQAELAPAMDAAIKIFKHVNEIEGINASVTFSASAPEICSARLLVPKEQAAHLIGKQGIM 202
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGV 250
IKSIQE +G+++R++ D+ Y DERIVE+ G + K L AL++V+G LRKFLVD V
Sbjct: 203 IKSIQETTGSTIRIIDKDDLLNYRMVDERIVEILGASLKALNALKSVLGLLRKFLVDHSV 262
Query: 251 LPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLE--- 307
L LFE+ N +I+ + + + ++ +S +Y R+ L + + L
Sbjct: 263 LHLFERK-NQAIAHAQDI-----------SKENQVSNDYALPVSRDLLLSDGQSPLSPKG 310
Query: 308 SRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIEN 367
+RY LS YG+DP++ SS + + ++ +ITQTM+IP+ A++IIGVGG +I +
Sbjct: 311 NRY-LS----YGRDPSVCDPYSSQIRHPTESLIKKITQTMKIPLPQADEIIGVGGRNIAH 365
Query: 368 IRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES--ITSSYGQ-I 424
IR SGAI+ ++E+ +E+ V I+G+SSQV A QL+Q + +E+ SSY +
Sbjct: 366 IRSVSGAIVVLEETGDYLNEVLVTIQGSSSQVHTAHQLVQVILLGDREAPPTRSSYNNDL 425
Query: 425 DTG-----YRP-------SYPQLGNSSYPSSSLSTQPYGGYGSSGVGGYTSYRL 466
DTG + P +P L + PSS G+G S Y YRL
Sbjct: 426 DTGIPGRLFAPDGVPASQDHPLLHHEYRPSSD-------GWGHS---AYRGYRL 469
>gi|326500580|dbj|BAK06379.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 471
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 169/418 (40%), Positives = 246/418 (58%), Gaps = 33/418 (7%)
Query: 62 AAAVPEEKK----WPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP 117
A V EE K WPG+PG VFR++V KVG +IGR+GE+IK+ CE TRAR++VLD
Sbjct: 74 AFEVAEEGKKATPWPGFPGASVFRLVVAGDKVGGLIGRRGEVIKRLCEVTRARVRVLDPT 133
Query: 118 VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLV 175
RIVLIS EE +A ++PAMDAAVR+FK V+ + D SG CS RLLV
Sbjct: 134 DGVSSRIVLISATEETQAELAPAMDAAVRIFKHVNDIEGINPDFTLPVSGPEICSARLLV 193
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALE 235
P Q +LIGKQG+ I+ +QE++G ++R++ DE +ERIVE++G + KVL AL+
Sbjct: 194 PKAQGRHLIGKQGTTIQLMQESTGTTIRIIDKDELLSNQMVEERIVEIRGASLKVLNALK 253
Query: 236 AVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRR 295
+V+G LR+FLVD VL LFE+ N +++ + +++ ++ ++ +Y +
Sbjct: 254 SVLGLLRRFLVDHSVLHLFERK-NEEVAEVQ-----------NSSKENQVTNDYALVVNQ 301
Query: 296 ESLFLEREPQLE---SRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPIS 352
+ L + RY LS YG DP++ S + R + ++++ITQTM+IP+
Sbjct: 302 DLLLSDSRSHHNPNGGRY-LS----YGHDPSVCDPYSRDIRRPTVSLISKITQTMRIPLP 356
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
AE+IIGV G +I +IR SGA++ ++E+ DE+ V I+GTSSQVQ A QLIQE +
Sbjct: 357 QAEEIIGVRGQTIAHIRSVSGAMVVLEETGNYLDEVLVSIEGTSSQVQTAHQLIQEVLLG 416
Query: 413 HKESI---TSSYGQIDTG-YRPSYPQLGNSSYPSSSLSTQPYGGYGSSGVGGYTSYRL 466
+ E + + YG D G R + G+ + P +L Y Y SS Y YRL
Sbjct: 417 NGEPLPPWSRRYGNPDAGPVRLPFALHGSPASPECALPL--YREYRSSS-AAYHGYRL 471
>gi|147794489|emb|CAN67081.1| hypothetical protein VITISV_007074 [Vitis vinifera]
Length = 534
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 157/347 (45%), Positives = 208/347 (59%), Gaps = 27/347 (7%)
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPV 137
FRM+VP KVGSIIGRKGE IKK E+TRARIK+LDGP + +R V++S KEEP++ +
Sbjct: 128 VFFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVMVSAKEEPDSSL 187
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PAMD ++V KR+ E D G S RLLV ++QA +LIGKQG +KSIQE
Sbjct: 188 PPAMDGLLKVHKRIVDGLEGDSSHMPPGGK-VSTRLLVAASQAGSLIGKQGGTVKSIQEA 246
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE-- 255
S VRVL A++ P + +D+R+VE+ GE V KA+E + HLRKFLVD+ V+PLFE
Sbjct: 247 SNCIVRVLGAEDLPIFALQDDRVVEVVGEPIGVHKAVELIASHLRKFLVDRSVIPLFEMQ 306
Query: 256 -KTYNASISQERQVETWADKSSL--HAATQSAISTEYTPSTRRESL-----------FLE 301
+ N I + W L +A+ L +E
Sbjct: 307 MQMSNPPIEHRPPHQPWGPPQGLPPNASGGPGFGPNPPYMPPPRQLDSYYPPPELPPPVE 366
Query: 302 REPQLESRYRLSGISIYGQD-PALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGV 360
++P GIS YG++ P SSA + + ++TQ+TQ MQIP+SYA+ +IG
Sbjct: 367 KQPH-------QGISAYGREVPMGGHAPSSA--QPAPSMITQVTQQMQIPLSYADAVIGT 417
Query: 361 GGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
G SI IRR SGA +T+QE+RG+P E+TVEI GT+SQVQ AQQLIQ
Sbjct: 418 AGASISYIRRASGATVTIQETRGVPGEMTVEINGTASQVQAAQQLIQ 464
>gi|218189965|gb|EEC72392.1| hypothetical protein OsI_05673 [Oryza sativa Indica Group]
gi|222622089|gb|EEE56221.1| hypothetical protein OsJ_05205 [Oryza sativa Japonica Group]
Length = 442
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 232/412 (56%), Gaps = 73/412 (17%)
Query: 70 KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP-DRIVLIS 128
+WPGWPG VFR++V KVG +IGR+G+ IK+ CEDTRAR++VL+ ++ +RIVLIS
Sbjct: 89 RWPGWPGASVFRLVVATDKVGGLIGRRGDTIKRLCEDTRARVRVLEAAAAAAANRIVLIS 148
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCSVRLLVPSTQAINLIGK 186
EE +A + PAMDAA+++F ++ + + + D SG+A CS +LLVPS QA +LIGK
Sbjct: 149 ATEESQAELPPAMDAAIKIFMHINDIEKINCDDTLSGSAPEKCSAKLLVPSAQATHLIGK 208
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
QG IKSIQE +GA+V+++ E Y DERIV++ G KVL AL++V+G LRKFLV
Sbjct: 209 QGVRIKSIQETTGATVKIIDKVELLSYDVVDERIVDIHGAPLKVLHALKSVLGVLRKFLV 268
Query: 247 DQGVLPLFEKTYNA-----SISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE 301
D GVL LFE+ A S+E QV
Sbjct: 269 DHGVLHLFERKNQAVGEAHDNSKENQVN-------------------------------- 296
Query: 302 REPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVG 361
Q+ S YRL +D L R+ P+ +ITQTMQIP+ +AE+IIG
Sbjct: 297 ---QVASDYRLP----VNKDILLPDHRT--------PLNPKITQTMQIPLPFAEEIIGAR 341
Query: 362 GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESIT-SS 420
G +I IR SGA++ ++ESR P+E+ V IKG+SS QE ++ +KE + SS
Sbjct: 342 GQNISYIRSVSGAVVDLEESRDYPNEVLVMIKGSSS---------QEVLSGNKERPSGSS 392
Query: 421 YGQIDTGYRPSYPQLG-----NSSYPSSSLSTQPY-GGYGSSGVGGYTSYRL 466
Y +D+G P + G N + +S QPY YGSS + YRL
Sbjct: 393 YINLDSG--PKFLISGHINPVNRDHLASYRVHQPYIVRYGSSSLPRLRGYRL 442
>gi|413935391|gb|AFW69942.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 468
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 149/349 (42%), Positives = 212/349 (60%), Gaps = 45/349 (12%)
Query: 70 KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS--SPDRIVLI 127
+WPGWPG VFR++VP KVG IIGR+G+ IK+ C++TRAR++VLD P + RIVL+
Sbjct: 90 RWPGWPGASVFRLVVPADKVGGIIGRRGDTIKRLCDETRARVRVLDAPHGDGAFSRIVLV 149
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCSVRLLVPSTQAINLIG 185
S +EE EA +SPAM+AA+++FK ++ + + + D A SVRLLVP QA+++IG
Sbjct: 150 SAREEVEAELSPAMNAAIKIFKHINEIEDINSDGTLMAPAPEISSVRLLVPFAQALHVIG 209
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
KQG IKSIQE++G++VR++ DE + T ERIVE+ G + +VL AL+ V+G LRKFL
Sbjct: 210 KQGVTIKSIQESTGSTVRIMDEDELLSHETMGERIVEINGASLEVLNALKLVLGLLRKFL 269
Query: 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQ 305
VD GVL LFE+ N ++Q +Q + P R FL
Sbjct: 270 VDHGVLHLFERK-NPEVAQPQQ-------------------SRGNPKGSR---FL----- 301
Query: 306 LESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSI 365
YG DP+ S L + + ++T+IT+TMQIP++ +IIGV G ++
Sbjct: 302 ------------YGHDPSFHAPYSRDLSQPADSLITKITRTMQIPLADVGEIIGVRGENV 349
Query: 366 ENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
E IR SGA++ V E G E+ V I+GT SQVQ A QL+QE ++ +
Sbjct: 350 ELIRSVSGAVV-VLEKIGNGQEVRVMIEGTPSQVQTAHQLVQEALSGDR 397
>gi|212723546|ref|NP_001131366.1| uncharacterized protein LOC100192689 [Zea mays]
gi|194691330|gb|ACF79749.1| unknown [Zea mays]
gi|413935393|gb|AFW69944.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 467
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/352 (42%), Positives = 212/352 (60%), Gaps = 52/352 (14%)
Query: 70 KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS--SPDRIVLI 127
+WPGWPG VFR++VP KVG IIGR+G+ IK+ C++TRAR++VLD P + RIVL+
Sbjct: 90 RWPGWPGASVFRLVVPADKVGGIIGRRGDTIKRLCDETRARVRVLDAPHGDGAFSRIVLV 149
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCSVRLLVPSTQAINLIG 185
S +EE EA +SPAM+AA+++FK ++ + + + D A SVRLLVP QA+++IG
Sbjct: 150 SAREEVEAELSPAMNAAIKIFKHINEIEDINSDGTLMAPAPEISSVRLLVPFAQALHVIG 209
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
KQG IKSIQE++G++VR++ DE + T ERIVE+ G + +VL AL+ V+G LRKFL
Sbjct: 210 KQGVTIKSIQESTGSTVRIMDEDELLSHETMGERIVEINGASLEVLNALKLVLGLLRKFL 269
Query: 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTR---RESLFLER 302
VD GVL LFE+ N ++Q P +R + S FL
Sbjct: 270 VDHGVLHLFERK-NPEVAQ--------------------------PQSRGNPKGSRFL-- 300
Query: 303 EPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGG 362
YG DP+ S L + + ++T+IT+TMQIP++ +IIGV G
Sbjct: 301 ---------------YGHDPSFHAPYSRDLSQPADSLITKITRTMQIPLADVGEIIGVRG 345
Query: 363 TSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
++E IR SGA++ V E G E+ V I+GT SQVQ A QL+QE ++ +
Sbjct: 346 ENVELIRSVSGAVV-VLEKIGNGQEVRVMIEGTPSQVQTAHQLVQEALSGDR 396
>gi|413935392|gb|AFW69943.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 397
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 208/342 (60%), Gaps = 45/342 (13%)
Query: 70 KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS--SPDRIVLI 127
+WPGWPG VFR++VP KVG IIGR+G+ IK+ C++TRAR++VLD P + RIVL+
Sbjct: 90 RWPGWPGASVFRLVVPADKVGGIIGRRGDTIKRLCDETRARVRVLDAPHGDGAFSRIVLV 149
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCSVRLLVPSTQAINLIG 185
S +EE EA +SPAM+AA+++FK ++ + + + D A SVRLLVP QA+++IG
Sbjct: 150 SAREEVEAELSPAMNAAIKIFKHINEIEDINSDGTLMAPAPEISSVRLLVPFAQALHVIG 209
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
KQG IKSIQE++G++VR++ DE + T ERIVE+ G + +VL AL+ V+G LRKFL
Sbjct: 210 KQGVTIKSIQESTGSTVRIMDEDELLSHETMGERIVEINGASLEVLNALKLVLGLLRKFL 269
Query: 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQ 305
VD GVL LFE+ N ++Q +Q + P R FL
Sbjct: 270 VDHGVLHLFERK-NPEVAQPQQ-------------------SRGNPKGSR---FL----- 301
Query: 306 LESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSI 365
YG DP+ S L + + ++T+IT+TMQIP++ +IIGV G ++
Sbjct: 302 ------------YGHDPSFHAPYSRDLSQPADSLITKITRTMQIPLADVGEIIGVRGENV 349
Query: 366 ENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
E IR SGA++ V E G E+ V I+GT SQVQ A QL+Q
Sbjct: 350 ELIRSVSGAVV-VLEKIGNGQEVRVMIEGTPSQVQTAHQLVQ 390
>gi|41053065|dbj|BAD08009.1| putative KH domain protein [Oryza sativa Japonica Group]
Length = 458
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 169/428 (39%), Positives = 230/428 (53%), Gaps = 89/428 (20%)
Query: 70 KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV----------S 119
+WPGWPG VFR++V KVG +IGR+G+ IK+ CEDTRAR++VL+
Sbjct: 89 RWPGWPGASVFRLVVATDKVGGLIGRRGDTIKRLCEDTRARVRVLEAAAAAAANRIVDSD 148
Query: 120 SPDRI-------VLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCS 170
S D I VLIS EE +A + PAMDAA+++F ++ + + + D SG+A CS
Sbjct: 149 SNDFIAKVTFEMVLISATEESQAELPPAMDAAIKIFMHINDIEKINCDDTLSGSAPEKCS 208
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+LLVPS QA +LIGKQG IKSIQE +GA+V+++ E Y DERIV++ G KV
Sbjct: 209 AKLLVPSAQATHLIGKQGVRIKSIQETTGATVKIIDKVELLSYDVVDERIVDIHGAPLKV 268
Query: 231 LKALEAVVGHLRKFLVDQGVLPLFEKTYNA-----SISQERQVETWADKSSLHAATQSAI 285
L AL++V+G LRKFLVD GVL LFE+ A S+E QV
Sbjct: 269 LHALKSVLGVLRKFLVDHGVLHLFERKNQAVGEAHDNSKENQVN---------------- 312
Query: 286 STEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQ 345
Q+ S YRL +D L R+ P+ +ITQ
Sbjct: 313 -------------------QVASDYRLP----VNKDILLPDHRT--------PLNPKITQ 341
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQL 405
TMQIP+ +AE+IIG G +I IR SGA++ ++ESR P+E+ V IKG+SS
Sbjct: 342 TMQIPLPFAEEIIGARGQNISYIRSVSGAVVDLEESRDYPNEVLVMIKGSSS-------- 393
Query: 406 IQEYMNNHKESIT-SSYGQIDTGYRPSYPQLG-----NSSYPSSSLSTQPY-GGYGSSGV 458
QE ++ +KE + SSY +D+G P + G N + +S QPY YGSS +
Sbjct: 394 -QEVLSGNKERPSGSSYINLDSG--PKFLISGHINPVNRDHLASYRVHQPYIVRYGSSSL 450
Query: 459 GGYTSYRL 466
YRL
Sbjct: 451 PRLRGYRL 458
>gi|242038781|ref|XP_002466785.1| hypothetical protein SORBIDRAFT_01g014200 [Sorghum bicolor]
gi|241920639|gb|EER93783.1| hypothetical protein SORBIDRAFT_01g014200 [Sorghum bicolor]
Length = 430
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 152/393 (38%), Positives = 216/393 (54%), Gaps = 37/393 (9%)
Query: 8 DNGSINLPEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPE 67
D GS N P + Q E+ +E P E E+ D + Q V +
Sbjct: 53 DEGSAN-PYNEEQANVYNEETGNQYNEDPTNSYQEELENAFSGDPDMAQKDNSQVNNV-D 110
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
+ KWPGWPG VFR++VP KVG+IIGRKGE IKK CE+T+ARIK+LDGP P+R V+I
Sbjct: 111 DDKWPGWPGESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMI 170
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV-DAKASGAAFCSVRLLVPSTQAINLIGK 186
S K+EP+AP+SPA+D +RV KR++ + + S RLLVPS+QA +LIGK
Sbjct: 171 SAKDEPDAPLSPAVDGLLRVHKRITDSSNGESGQLQRSAGNIGPTRLLVPSSQAGSLIGK 230
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
QG+ IKSIQ++S + VR++ + P D+R+VE+QGE V KA+E + HLRKFLV
Sbjct: 231 QGATIKSIQDSSKSVVRIV--ENVPPVALNDDRVVEIQGEPLGVQKAVELIASHLRKFLV 288
Query: 247 DQGVLPLFEKTYNAS-ISQERQV---------ETW-ADKSSLHAATQSAISTEYTPSTRR 295
D+ VLPLFE + +E+ V +TW + + ++ P +
Sbjct: 289 DRSVLPLFETHMKMHGMPREQPVPPPQHWGPPQTWGPPPNIPPGGPGFGGNPQFIPPRPQ 348
Query: 296 ESLF-------LEREPQLESRYRLSGISIYGQDP---ALSTIRSSALGRASGPIVTQITQ 345
+S + +E++P GIS YG++ S + L A +Q+T
Sbjct: 349 DSYYPTPDAPAMEKQPHY-------GISAYGREAPPSGASATGNQPLSHAG----SQVTH 397
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
M IP++YA+ +IG G SI IRR SGA +T+
Sbjct: 398 NMHIPLNYADAVIGAAGASISYIRRHSGATVTI 430
>gi|302816563|ref|XP_002989960.1| hypothetical protein SELMODRAFT_428421 [Selaginella moellendorffii]
gi|300142271|gb|EFJ08973.1| hypothetical protein SELMODRAFT_428421 [Selaginella moellendorffii]
Length = 393
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 205/352 (58%), Gaps = 43/352 (12%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P E+KWPGWPG VFR+IVP+ KVG+IIGRKGE +K+ CE+TR+RIK+LDG + +RIV
Sbjct: 37 PGERKWPGWPGDNVFRLIVPLHKVGAIIGRKGEFVKRMCEETRSRIKILDGVPGTLERIV 96
Query: 126 LISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND---VDAKASGAAFCSVRLLVPSTQAIN 182
L+S KE+PEA +SPAMD +RV +RV+ D V+ + RLLV +TQA +
Sbjct: 97 LVSAKEDPEATISPAMDGLLRVHRRVTEGSSGDGEPVEHIILPSGLVQSRLLVTATQAGS 156
Query: 183 LIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
LIG+Q +E P D+R+VE+QGE KV KA+E VV HLR
Sbjct: 157 LIGRQ--------------------EELPLCALADDRMVEVQGEILKVQKAMELVVSHLR 196
Query: 243 KFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQS--------AISTEY-TPST 293
KFLVD+ VL LFE +N S + R + L A S AI+T + TP+
Sbjct: 197 KFLVDRSVLQLFE--FNVSFAGSRSIGYKVHNGELQRAMSSQVQGQQAAAIATSWATPTV 254
Query: 294 RRESLFLERE---PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIP 350
+ + + Q +S++ +S+YG DP + S+ P ++Q +Q+P
Sbjct: 255 AATTPYSSTDYYADQAQSQHY--AVSMYGGDPGRVDVTST----TPAPPAESVSQQLQVP 308
Query: 351 ISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
+ YA+ IIG G +I +RRTSGA I++QE+ P E+T+E+ G S+QVQ A
Sbjct: 309 LLYADAIIGTAGANINYMRRTSGATISIQETPNAPGEMTIEVHGQSTQVQTA 360
>gi|302770987|ref|XP_002968912.1| hypothetical protein SELMODRAFT_409630 [Selaginella moellendorffii]
gi|300163417|gb|EFJ30028.1| hypothetical protein SELMODRAFT_409630 [Selaginella moellendorffii]
Length = 393
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 147/352 (41%), Positives = 207/352 (58%), Gaps = 43/352 (12%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P E+KWPGWPG VFR+IVP+ KVG+IIGRKGE +K+ CE+TR+RIK+LDG + +RIV
Sbjct: 37 PGERKWPGWPGDNVFRLIVPLHKVGAIIGRKGEFVKRMCEETRSRIKILDGVPGTLERIV 96
Query: 126 LISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND---VDAKASGAAFCSVRLLVPSTQAIN 182
L+S KE+PEA +SPAMD +RV +RV+ D V+ + RLLV +TQA +
Sbjct: 97 LVSAKEDPEATISPAMDGLLRVHRRVTEGSSGDGEPVEHIILPSGLVQSRLLVTATQAGS 156
Query: 183 LIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
LIG+Q +E P D+R+VE+QGE KV KA+E VV HLR
Sbjct: 157 LIGRQ--------------------EELPLCALADDRMVEVQGEILKVQKAMELVVSHLR 196
Query: 243 KFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQS--------AISTEY-TPST 293
KFLVD+ VL LFE +N S + R + L A S AI+T + TP+
Sbjct: 197 KFLVDRSVLQLFE--FNVSFAGSRSIGYKVHNGELQRAMSSQVQGQQAAAIATSWATPTV 254
Query: 294 RRESLFLERE---PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIP 350
+ + + Q +S++ +S+YG DP + S+ + P T ++Q +Q+P
Sbjct: 255 AATTPYSSTDYYADQAQSQHY--AVSVYGGDPGRVDVTSTT---PAAPAET-VSQQLQVP 308
Query: 351 ISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
+ YA+ IIG G +I +RRTSGA I++QE+ P E+T+E+ G S+QVQ A
Sbjct: 309 LLYADAIIGTAGANINYMRRTSGATISIQETPNAPGEMTIEVHGQSTQVQTA 360
>gi|449524744|ref|XP_004169381.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 224
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/220 (60%), Positives = 160/220 (72%), Gaps = 12/220 (5%)
Query: 1 MATAETTDNGSIN-LPEP--DPQPETATTESPTTESEAPPTIGSENTEHTTE---SDSAL 54
MAT TT+NGS + +P P P A E +TE+ + + + + SDSA
Sbjct: 1 MATNTTTENGSTDAIPNPLSSTLPSLAAAEPDSTEAGDDDSDSDPSNQDYSSVPPSDSAA 60
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
+ P P +KKWPGWPG CVFR+IVPV+KVGSIIGRKG+LIKK CE+TRARI+VL
Sbjct: 61 HE---PSNHTGPSDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVL 117
Query: 115 DGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
DG V +PDR+VLISGKEE E+P+SPAMDA +RVFKRVSGL EN+ +AKAS FCS+RLL
Sbjct: 118 DGAVGTPDRVVLISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKAS---FCSIRLL 174
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYV 214
V STQAINLIGKQGSLIKSIQE++GASVRVLS F V
Sbjct: 175 VASTQAINLIGKQGSLIKSIQESTGASVRVLSGGMLSFSV 214
>gi|224131210|ref|XP_002328482.1| predicted protein [Populus trichocarpa]
gi|222838197|gb|EEE76562.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 140/341 (41%), Positives = 197/341 (57%), Gaps = 14/341 (4%)
Query: 126 LISGKEEPEAPVSPAMDAAVRVFKRV-SGLPENDVDAKASGAAFCSVRLLVPSTQAINLI 184
++S KEEP++ + PAMD +RV KR+ GL + A S A S RLLVP++QA +LI
Sbjct: 1 MVSAKEEPDSSLPPAMDGLLRVHKRIIDGLEGDSSHAPPSSGAKVSTRLLVPASQAGSLI 60
Query: 185 GKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
GKQG +KSIQE S VRVL A++ P + +D+R+VE+ GEA V KA+E + LRKF
Sbjct: 61 GKQGGTVKSIQEASACIVRVLGAEDLPVFSLQDDRVVEVLGEAVGVHKAVELIASQLRKF 120
Query: 245 LVDQGVLPLFE---KTYNASISQERQVETWADKSSLH----AATQSAISTEYTPSTRRES 297
LVD+ ++PLFE + N + Q ++W SL + +Y R+
Sbjct: 121 LVDRSIIPLFEMQMQMANPPMEQMPPHQSWGGPQSLPLNPVGGPGYGQNPQYMQPPRQHD 180
Query: 298 LFL---EREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYA 354
+ + P +E + GIS YG+ + +S+ +A+ ++TQITQ MQIP+SYA
Sbjct: 181 NYYPPSDMPPPMEKQPH-QGISAYGRQTPMGG-HASSNAQAAPSMITQITQQMQIPLSYA 238
Query: 355 EDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
+ +IG G SI IRR SGA +T+QE+RG+P+ +TVEI GT+SQVQ AQQLIQ +
Sbjct: 239 DAVIGTAGASISYIRRASGATVTIQETRGVPEAMTVEISGTASQVQTAQQLIQAIFSGAP 298
Query: 415 ESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPYGGYGS 455
+ G D GY P +S PS+ T GGY S
Sbjct: 299 AQPQTG-GPADQGYNPYSHSSVYASPPSNPEHTGHTGGYSS 338
>gi|108709930|gb|ABF97725.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 389
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 148/214 (69%), Gaps = 18/214 (8%)
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
D+ V +KKWPGWPG VFR+++P KVG+IIGRKGE IKK CE+++ARIK+LDGP
Sbjct: 91 DSLPVEADKKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGV 150
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKRV-------SGLPENDVDAKASGAAFCSVRL 173
P+R V+IS K+EP+AP+SPAMD RV+KR+ SG PE ++ + RL
Sbjct: 151 PERTVMISAKDEPDAPISPAMDGLFRVYKRITDGSDGDSGQPERNI------SNVGPTRL 204
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA 233
LVP++QA +LIGKQG+ IKSIQ++S + VR++ P D+R+VE+QGE V KA
Sbjct: 205 LVPASQAGSLIGKQGATIKSIQDSSKSIVRIVET--LPLVALNDDRVVEIQGEPVGVQKA 262
Query: 234 LEAVVGHLRKFLVDQGVLPLFE---KTYNASISQ 264
LE++ HLRKFLVD+ VLPLFE K +NA Q
Sbjct: 263 LESIASHLRKFLVDRSVLPLFEGQMKMHNAQREQ 296
>gi|242060324|ref|XP_002451451.1| hypothetical protein SORBIDRAFT_04g002170 [Sorghum bicolor]
gi|241931282|gb|EES04427.1| hypothetical protein SORBIDRAFT_04g002170 [Sorghum bicolor]
Length = 508
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 153/413 (37%), Positives = 220/413 (53%), Gaps = 75/413 (18%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE 131
P WPG VFR++VP KV L+S KE
Sbjct: 96 PRWPGTNVFRLVVPTDKV------------------------------------LVSAKE 119
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCSVRLLVPSTQAINLIGKQGS 189
E EA +SPAM+AA+++FK ++ + E + D S +A CSVRLLVP QA++LIGKQG
Sbjct: 120 EVEAEMSPAMNAAIKIFKHINEIEEINSDGTLSASASDICSVRLLVPFEQAVHLIGKQGV 179
Query: 190 LIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
IKSI+E++G +VR+ DE + T DERIVE++G + KVL AL++V+ LRKFLVD G
Sbjct: 180 TIKSIEESTGTTVRIRDEDELLSHETVDERIVEIRGASLKVLNALKSVLELLRKFLVDHG 239
Query: 250 VLPLFEKTYNASISQERQVETW----------ADKSSLHAATQSAISTEYTPS-----TR 294
VL LFE+ N + Q + + +D+ S S + + PS
Sbjct: 240 VLHLFERK-NQEVVQPQDASNYPLAVNQDFLLSDQRSHGDPISSRLLYGHDPSFCGPHHA 298
Query: 295 RESLFLEREPQLESRYRLSGIS-IYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISY 353
+SL ++ +SR G +YG+DP+ S L + + ++T+IT+TMQ+P++Y
Sbjct: 299 TDSLMIQ-----QSRANPKGSRFLYGRDPSFHDPYSRDLSQPTDSLITKITRTMQVPLAY 353
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQE----- 408
AED+IGV G +IE IR SGA++ ++E G E+ V I+GT SQVQ A QL+Q
Sbjct: 354 AEDVIGVRGENIEYIRSVSGAVVALEEI-GDYQEVQVMIEGTPSQVQTAHQLVQHHWSPR 412
Query: 409 ----YMNNH---KESITSSYGQIDTGYR--PSYPQLGNSSYPSSSLSTQPYGG 452
YM+++ ES S Y ++ +G R PS NS L P+ G
Sbjct: 413 TQVIYMDDNVAPLESKNSGYLEVISGDRAPPSRSSYYNSEGADPGLLNSPHVG 465
>gi|115489418|ref|NP_001067196.1| Os12g0597600 [Oryza sativa Japonica Group]
gi|113649703|dbj|BAF30215.1| Os12g0597600, partial [Oryza sativa Japonica Group]
Length = 367
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/347 (39%), Positives = 193/347 (55%), Gaps = 26/347 (7%)
Query: 125 VLISGKEEPEAPVSPAMDAAVRVFKRVS-GLP-ENDVDAKASGAAFCSVRLLVPSTQAIN 182
V+IS K+EP+AP+ PA+D +RV KR++ GL E+D +A+G RLLVP++QA +
Sbjct: 12 VMISAKDEPDAPLPPAVDGLLRVHKRITDGLDGESDQPQRAAGT-VGPTRLLVPASQAGS 70
Query: 183 LIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
LIGKQG+ IKSIQ+ S +R+L + P D+R+VE+QGE V KA+E + HLR
Sbjct: 71 LIGKQGATIKSIQDASKCVLRIL--ESVPPVALSDDRVVEIQGEPLDVHKAVELIASHLR 128
Query: 243 KFLVDQGVLPLFE---KTYNASISQERQVETWADKSSLHAATQSA--------ISTEYTP 291
KFLVD+ VLPLFE K +NA Q + + ++ P
Sbjct: 129 KFLVDRSVLPLFEMQMKVHNAHREQPMPPPQTWGPPPPWGHPSNVPPGGPGYGGNPQFMP 188
Query: 292 STRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPI-VTQITQTMQIP 350
++ + + + GIS YG+D A T A G P +QIT +MQ+P
Sbjct: 189 PRPQDHYYPPPDVPPVEKQPHYGISSYGRD-APPTGAPPASGNQHPPHGSSQITHSMQVP 247
Query: 351 ISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+SYA+ +IG G SI IRR SGA I++QE G+P E+TVEI G++SQVQ AQQLI+ +M
Sbjct: 248 LSYADAVIGAAGASISYIRRHSGATISIQE--GVPGEMTVEISGSASQVQTAQQLIKNFM 305
Query: 411 -----NNHKESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPYGG 452
++ +DTGY SYP G +SY S P+ G
Sbjct: 306 AEASPQGPPQAPAPPAQPVDTGYS-SYPPYGGTSYGSPPGGAGPHNG 351
>gi|108862918|gb|ABG22073.1| FLK, putative, expressed [Oryza sativa Japonica Group]
gi|215694782|dbj|BAG89973.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 355
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 192/346 (55%), Gaps = 26/346 (7%)
Query: 126 LISGKEEPEAPVSPAMDAAVRVFKRVS-GLP-ENDVDAKASGAAFCSVRLLVPSTQAINL 183
+IS K+EP+AP+ PA+D +RV KR++ GL E+D +A+G RLLVP++QA +L
Sbjct: 1 MISAKDEPDAPLPPAVDGLLRVHKRITDGLDGESDQPQRAAGT-VGPTRLLVPASQAGSL 59
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
IGKQG+ IKSIQ+ S +R+L + P D+R+VE+QGE V KA+E + HLRK
Sbjct: 60 IGKQGATIKSIQDASKCVLRIL--ESVPPVALSDDRVVEIQGEPLDVHKAVELIASHLRK 117
Query: 244 FLVDQGVLPLFE---KTYNASISQERQVETWADKSSLHAATQSA--------ISTEYTPS 292
FLVD+ VLPLFE K +NA Q + + ++ P
Sbjct: 118 FLVDRSVLPLFEMQMKVHNAHREQPMPPPQTWGPPPPWGHPSNVPPGGPGYGGNPQFMPP 177
Query: 293 TRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPI-VTQITQTMQIPI 351
++ + + + GIS YG+D A T A G P +QIT +MQ+P+
Sbjct: 178 RPQDHYYPPPDVPPVEKQPHYGISSYGRD-APPTGAPPASGNQHPPHGSSQITHSMQVPL 236
Query: 352 SYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM- 410
SYA+ +IG G SI IRR SGA I++QE G+P E+TVEI G++SQVQ AQQLI+ +M
Sbjct: 237 SYADAVIGAAGASISYIRRHSGATISIQE--GVPGEMTVEISGSASQVQTAQQLIKNFMA 294
Query: 411 ----NNHKESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPYGG 452
++ +DTGY SYP G +SY S P+ G
Sbjct: 295 EASPQGPPQAPAPPAQPVDTGYS-SYPPYGGTSYGSPPGGAGPHNG 339
>gi|359479585|ref|XP_002275698.2| PREDICTED: uncharacterized protein LOC100266515 [Vitis vinifera]
Length = 858
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 135/187 (72%), Gaps = 4/187 (2%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
+KWPGWPG VFRM++PV KVG IIGRKGE IKK E+T+ARIK+LDGP + +R V++S
Sbjct: 31 EKWPGWPGENVFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVS 90
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
KEEP+AP++PA+D +RV K + + E+DV + A S RLLV + QA +LIGKQG
Sbjct: 91 AKEEPDAPIAPAIDGLLRVHKCIMDV-ESDVPSAA--GVMVSTRLLVVAAQAGSLIGKQG 147
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
+ IKSIQE S VRVL + P + +++ +VE+QGE A V KA+E + +LRKFLVD+
Sbjct: 148 ATIKSIQEASNCIVRVL-GENLPLFALQNDTVVEIQGEPASVHKAVELIASNLRKFLVDR 206
Query: 249 GVLPLFE 255
V+ +FE
Sbjct: 207 SVIKVFE 213
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 80/128 (62%), Gaps = 8/128 (6%)
Query: 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
ITQ MQ+P+SYA+ +IG G +I +RRTSGA I ++E++G+P E+TVEI G+ SQVQ A
Sbjct: 733 ITQYMQVPLSYADAVIGASGVNISYVRRTSGATIAIEETKGVPGEMTVEINGSVSQVQTA 792
Query: 403 QQLIQEYMNNHKES-ITSSYGQIDTGYRPSYPQLG--NSSYPSS---SLSTQPYGGYGSS 456
QQLIQ +M S + + G I GY P +P G ++S PS+ L G YGS
Sbjct: 793 QQLIQNFMAEAASSTLNLAGGAISQGYNP-FPTHGAVSTSQPSNVIEHLGPSAGGSYGSV 851
Query: 457 GVGGYTSY 464
G ++ Y
Sbjct: 852 -YGSHSGY 858
>gi|147807331|emb|CAN73002.1| hypothetical protein VITISV_044056 [Vitis vinifera]
Length = 1121
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 135/187 (72%), Gaps = 4/187 (2%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
+KWPGWPG VFRM++PV KVG IIGRKGE IKK E+T+ARIK+LDGP + +R V++S
Sbjct: 31 EKWPGWPGENVFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVS 90
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
KEEP+AP++PA+D +RV K + + E+DV + A S RLLV + QA +LIGKQG
Sbjct: 91 AKEEPDAPIAPAIDGLLRVHKCIMDV-ESDVPSAA--GVMVSTRLLVVAAQAGSLIGKQG 147
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
+ IKSIQE S VRVL + P + +++ +VE+QGE A V KA+E + +LRKFLVD+
Sbjct: 148 ATIKSIQEASNCIVRVL-GENLPLFALQNDTVVEIQGEPASVHKAVELIASNLRKFLVDR 206
Query: 249 GVLPLFE 255
V+ +FE
Sbjct: 207 SVIKVFE 213
>gi|147866135|emb|CAN79839.1| hypothetical protein VITISV_014516 [Vitis vinifera]
Length = 340
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 133/345 (38%), Positives = 201/345 (58%), Gaps = 32/345 (9%)
Query: 141 MDAAVRVFKRVSGL---PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
M+A + VFKRV+GL N +KAS SV LV +QA+++IGK+GS +++I+E+
Sbjct: 1 MEAVIEVFKRVTGLYPIDGNGXCSKASEVKLSSVTFLVGYSQALSIIGKEGSRVRAIEES 60
Query: 198 SGASVRVLSADEA--PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE 255
SG +V +LS A PFYV+ DERI+++QG+ KV+ A+EAV+ HLR +LVD V+P F
Sbjct: 61 SGTTVGILSRGCAGVPFYVSPDERIIKIQGQVLKVMAAMEAVLYHLRLYLVDSSVIPAFS 120
Query: 256 KTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTR--RESLF----LEREPQLESR 309
E+ V + K+ + A QS TP+ + +S++ L E ++E++
Sbjct: 121 ---------EKMV-XYQXKTGISQADQSLSLHHSTPAHQPGADSMYSLPLLGHEAKVEAK 170
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
S S+Y Q+P L + RA+ T+ ++IP S A+DIIG+ G +I++IR
Sbjct: 171 IPSSXSSLYAQEPVLGGLPLRRSXRAA--APAXRTERIKIPFSAAKDIIGIAGETIDHIR 228
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE--SITSSYGQIDTG 427
RTSG+IIT++E R LPDE +E++GT+SQ+Q AQQLI+E + +H + S Y +D G
Sbjct: 229 RTSGSIITIEEDRSLPDEYILEVRGTTSQLQTAQQLIEELLESHHQPGREGSIYDNMDAG 288
Query: 428 YRPSYPQLGNSSYPSSSLS------TQPYGGYGSSGVGGYTSYRL 466
S Q ++P S S +QP G G S G +T R
Sbjct: 289 LS-SNSQFALPTHPLSPFSPQYRFPSQPSGENGISSAGEHTGSRF 332
>gi|363808250|ref|NP_001242748.1| uncharacterized protein LOC100819415 [Glycine max]
gi|255637181|gb|ACU18921.1| unknown [Glycine max]
Length = 318
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 174/315 (55%), Gaps = 21/315 (6%)
Query: 126 LISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIG 185
++S KEEP+ + PA+D +RV K+V + + D+ + RLLV TQA +LIG
Sbjct: 1 MVSAKEEPDCSIPPAVDVLLRVHKQVVNVDPHPADSASGAGRPVVTRLLVADTQAGSLIG 60
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
KQGS IKS Q+ +G ++R+L ++ P + D+ +VE+QGE++ V KA+E V HLRKFL
Sbjct: 61 KQGSTIKSFQDATGCNIRILGSEHLPVFALRDDSVVEIQGESSGVHKAVELVAIHLRKFL 120
Query: 246 VDQGVLPLFEKTY-------NASISQERQVETWADKSSLHA-------ATQSAISTEYTP 291
VD+ ++ +FE N ++ + W A + +Y P
Sbjct: 121 VDRSIVVVFETQMQRPDVRVNQNVPPGPPHQPWGPPQGFQAPGPGSGGGPVFPPNPQYMP 180
Query: 292 STRRESLFLERE--PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQI 349
+ + P ++ Y +D ++ SSA + S +VT++TQ MQI
Sbjct: 181 PSHNYDNYYPPADLPPMDKHLHQGPAPAYVRDASMGIHSSSAQPQQS--VVTKVTQHMQI 238
Query: 350 PISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEY 409
P+SYA+ +IG G +I IRR SGA IT+QE+RG+P E+TVEI GT+SQ+Q AQQL+Q +
Sbjct: 239 PLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQVF 298
Query: 410 MNN---HKESITSSY 421
H ++ SY
Sbjct: 299 HFKGLLHSSNLHVSY 313
>gi|255559157|ref|XP_002520600.1| conserved hypothetical protein [Ricinus communis]
gi|223540199|gb|EEF41773.1| conserved hypothetical protein [Ricinus communis]
Length = 161
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/133 (72%), Positives = 108/133 (81%), Gaps = 3/133 (2%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
E KWPGWPG V+R+IVPV KVGSIIGRKGELIK+ C +TRARI++LDGP S DRIVLI
Sbjct: 17 EGKWPGWPGDNVYRLIVPVAKVGSIIGRKGELIKQMCIETRARIRILDGPPSISDRIVLI 76
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS---GAAFCSVRLLVPSTQAINLI 184
SGKEEPEA +SPA+DA +RVFKRVSG + DA S GAAF SVRLLV S+QAINLI
Sbjct: 77 SGKEEPEAALSPAIDAVLRVFKRVSGPSAGEGDATGSAVAGAAFSSVRLLVASSQAINLI 136
Query: 185 GKQGSLIKSIQEN 197
GKQGS IKSI E+
Sbjct: 137 GKQGSTIKSILES 149
>gi|357140452|ref|XP_003571781.1| PREDICTED: uncharacterized protein LOC100836040 [Brachypodium
distachyon]
Length = 587
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 129/188 (68%), Gaps = 5/188 (2%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
E ++PGWPG VFRM++ KVG+IIG+KGE +++ CE+T+A ++V+ G ++ +R+VLI
Sbjct: 52 ENRYPGWPGTTVFRMLISSTKVGAIIGQKGERVRRLCEETKASVRVIGGHFAAAERVVLI 111
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQ 187
KE+P+ P+ PAMDA +RV++ + ND + R+L+PS QA+NLIG+Q
Sbjct: 112 FAKEQPDEPIPPAMDALLRVYQNIV----NDDGLGMGSDSAVVTRILIPSEQALNLIGEQ 167
Query: 188 GSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD 247
GS+I I+E S +RVL + P + ED RIVE+ G+ +V KALE V HLRK+LVD
Sbjct: 168 GSMINLIEEASQTDIRVLDCNLPPAALDED-RIVEIWGQPTRVRKALELVARHLRKYLVD 226
Query: 248 QGVLPLFE 255
+ V+PLF+
Sbjct: 227 RSVIPLFD 234
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
+S G D L + S L S I +Q+ + MQ+PI YAE IIG G IE IRR S +
Sbjct: 445 VSACGPDVLLPVVVPS-LTSKSPAITSQVKEKMQVPIFYAEAIIGPTGARIEYIRRASRS 503
Query: 375 IITVQESRGLPDEI-TVEIKGTS-SQVQLAQQLIQ 407
I + + L D + +++I G+S + VQ A+ LI+
Sbjct: 504 SILIND---LDDSLMSIDITGSSATDVQTAEHLIK 535
>gi|242039711|ref|XP_002467250.1| hypothetical protein SORBIDRAFT_01g022040 [Sorghum bicolor]
gi|241921104|gb|EER94248.1| hypothetical protein SORBIDRAFT_01g022040 [Sorghum bicolor]
Length = 588
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 129/189 (68%), Gaps = 5/189 (2%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
E K+PGWPG VFRM++P KVG IIG KGE +++ CE+TRA ++++ G + + ++ V+I
Sbjct: 45 ESKYPGWPGTSVFRMLIPAQKVGVIIGHKGERVRRLCEETRACVRIIGGHLCAAEQAVII 104
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQ 187
G+E+PE P+ PAMDA +RV+++ + + +D + G R+LVPS QA +LIG+
Sbjct: 105 FGREQPEEPLPPAMDALLRVYQQT--INDESLDVGSDGVIV--RRILVPSEQAESLIGEH 160
Query: 188 GSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD 247
G +I SI E S +RVL D P + ED R+VE+ G A+V KALE V HLRK+LVD
Sbjct: 161 GVMINSIMEASQTDIRVLDGDLPPVALEED-RVVEIWGLPARVHKALELVASHLRKYLVD 219
Query: 248 QGVLPLFEK 256
+ V+PLF++
Sbjct: 220 RSVIPLFDR 228
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGT-SSQVQ 400
Q+ + MQ+PI YAE +IG G IE IRRTS + I + S G +++EI G ++ V
Sbjct: 472 QVKKKMQVPIFYAEAVIGPAGERIEYIRRTSRSNILISNSDG---AMSIEITGNAATDVL 528
Query: 401 LAQQLIQEYMNNHKESITSSYGQIDTGYRPSY 432
A+QLI+ +M E+ +S G + PSY
Sbjct: 529 TAEQLIKNFM---AEAAAASPGH-SFDFIPSY 556
>gi|212275472|ref|NP_001130567.1| uncharacterized protein LOC100191666 [Zea mays]
gi|194689502|gb|ACF78835.1| unknown [Zea mays]
gi|413934214|gb|AFW68765.1| hypothetical protein ZEAMMB73_642279 [Zea mays]
Length = 580
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 125/189 (66%), Gaps = 5/189 (2%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
E K+PGWPG VFRM++P KVG+IIG KGE +++ CE+TRA ++++ G + + ++ V+I
Sbjct: 45 ESKYPGWPGTTVFRMLIPAQKVGAIIGHKGERVRRLCEETRACVRIIGGHLCAAEQAVII 104
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQ 187
G+E+ + P+ PAMDA +RV+++ + + +D R+L PS QA +LIG+
Sbjct: 105 FGREQLDEPLPPAMDALLRVYQQT--INNDSLDVGPDNVIV--RRILAPSEQAASLIGEH 160
Query: 188 GSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD 247
G +I SI E S +RVL D P + ED R++E+ G A V KALE V HLRK+LVD
Sbjct: 161 GVMINSIMEASQTDIRVLDDDLPPVALEED-RVIEIWGSPAGVYKALELVASHLRKYLVD 219
Query: 248 QGVLPLFEK 256
+ V+PLF++
Sbjct: 220 RSVIPLFDR 228
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 8/95 (8%)
Query: 339 IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGT-SS 397
+ +Q+ + MQ+PI YAE +IG G IE IRRTS + I + S G + +EI G+ ++
Sbjct: 461 VASQVKKKMQVPIFYAEAVIGPTGERIEYIRRTSRSSILISNSEG---TMYIEITGSAAT 517
Query: 398 QVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSY 432
V A+QLI+ +M E+ +S G + PSY
Sbjct: 518 DVLTAEQLIKNFM---AEAAAASPGH-SYDFIPSY 548
>gi|413955215|gb|AFW87864.1| hypothetical protein ZEAMMB73_706163 [Zea mays]
Length = 204
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 117/158 (74%), Gaps = 3/158 (1%)
Query: 284 AISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQI 343
++ EY +R++L+LERE L+ SG+S+YG+DPALST+R + +GP++TQI
Sbjct: 16 SVVDEYILPVKRDTLYLERETLLDHNIHRSGVSLYGRDPALSTLRPPGI-HGAGPLLTQI 74
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
TQTMQIP++YAEDIIGV G +I IR SGA++T+QES G PD+ITVEIKGTSSQVQ AQ
Sbjct: 75 TQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQAAQ 134
Query: 404 QLIQEYMNNHKESITSSY--GQIDTGYRPSYPQLGNSS 439
QLIQ+ + H+E + SSY +D+ YR SY Q G+S+
Sbjct: 135 QLIQDSLAAHREPVRSSYVGAGLDSLYRSSYSQYGSST 172
>gi|115482006|ref|NP_001064596.1| Os10g0414700 [Oryza sativa Japonica Group]
gi|78708635|gb|ABB47610.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113639205|dbj|BAF26510.1| Os10g0414700 [Oryza sativa Japonica Group]
gi|215693240|dbj|BAG88622.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222612825|gb|EEE50957.1| hypothetical protein OsJ_31513 [Oryza sativa Japonica Group]
Length = 586
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 127/196 (64%), Gaps = 5/196 (2%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
E + PGWPG VFRM++P KVG++IG GE +++ CE+T+A ++V+ G ++ +R V+I
Sbjct: 49 ENRDPGWPGTSVFRMLIPATKVGAVIGHSGERLRRLCEETKACVRVIGGHFAAAERAVII 108
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQ 187
KE+P+ P PA+DA +RV++ + + ++ +D + + R+L PS QA +LIG Q
Sbjct: 109 FAKEQPDEPKPPAIDALLRVYECI--INDDGLDVRYNNIVV--ARILTPSEQAASLIGDQ 164
Query: 188 GSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD 247
GS+I I++ S ++ V+ D P ED+ I+E+ G A+V +ALE V HLRK+LV
Sbjct: 165 GSVINYIKKASKTNIHVIDGDLPPV-ALEDDMIIEIWGLPARVHQALELVACHLRKYLVH 223
Query: 248 QGVLPLFEKTYNASIS 263
+ V+PLF+ + IS
Sbjct: 224 RSVIPLFDPHVSIPIS 239
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 324 LSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRG 383
L + +L S + +Q+ MQ+PI YAE +IG G I+ IR+ SG+ + +++
Sbjct: 451 LPNVVVPSLTSQSPAVTSQVIMKMQVPIFYAEAVIGPTGARIDYIRQASGSSVVIKD--- 507
Query: 384 LPDE-ITVEIKGT-SSQVQLAQQLIQEYM 410
L D +++EI G+ ++ VQ+A+QLI+ +M
Sbjct: 508 LDDSAMSIEITGSAATDVQIAEQLIKNFM 536
>gi|218184511|gb|EEC66938.1| hypothetical protein OsI_33565 [Oryza sativa Indica Group]
Length = 800
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 128/228 (56%), Gaps = 36/228 (15%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
E + PGWPG VFRM++P KVG++IG GE +++ CE+T+A ++V+ G ++ +R V+I
Sbjct: 230 ENRDPGWPGTSVFRMLIPATKVGAVIGHSGERLRRLCEETKACVRVIGGHFAAAERAVII 289
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQ 187
KE+P+ P PA+DA +RV++ + ++ +D + + R+L PS QA +LIG Q
Sbjct: 290 FAKEQPDEPKPPAIDALLRVYE--CTINDDGLDVRYNNIVV--ARILTPSEQAASLIGDQ 345
Query: 188 GSLIKSIQENSGASVRVL-------------------------------SAD-EAPFYVT 215
GS+I I++ S ++ V+ AD + P
Sbjct: 346 GSVINYIKKASKTNIHVIGNFLTLMHLLEPLVPSIDKFDISGLQLSIYTDADGDLPPVAL 405
Query: 216 EDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
ED+ I+E+ G A+V +ALE V HLRK+LV + V+PLF+ + IS
Sbjct: 406 EDDMIIEIWGLPARVHQALELVACHLRKYLVHRSVIPLFDPHVSIPIS 453
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 324 LSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRG 383
L + +L S + +Q+ MQ+PI YAE +IG G I+ IR+ SG+ + +++
Sbjct: 665 LPNVVVPSLTSQSPAVTSQVIMKMQVPIFYAEAVIGPTGARIDYIRQASGSSVVIKD--- 721
Query: 384 LPDE-ITVEIKGT-SSQVQLAQQLIQEYM 410
L D +++EI G+ ++ VQ+A+QLI+ +M
Sbjct: 722 LDDSAMSIEITGSAATDVQIAEQLIKNFM 750
>gi|255580721|ref|XP_002531182.1| conserved hypothetical protein [Ricinus communis]
gi|223529223|gb|EEF31197.1| conserved hypothetical protein [Ricinus communis]
Length = 122
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 75/87 (86%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
E KWPGWP V+R+IVPV KVGSIIGRKGELIKK C +TRARI++LDGP S DRIVLI
Sbjct: 17 EGKWPGWPRDNVYRLIVPVAKVGSIIGRKGELIKKMCVETRARIRILDGPPSISDRIVLI 76
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGL 154
SGKEEPEA +SPAMDA +RVFKRVSGL
Sbjct: 77 SGKEEPEAALSPAMDAVLRVFKRVSGL 103
>gi|218187184|gb|EEC69611.1| hypothetical protein OsI_38985 [Oryza sativa Indica Group]
Length = 453
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 136/274 (49%), Gaps = 40/274 (14%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA-----DEAPF------------- 212
R+LVP+ + +IG++G IK + E S A ++VL D A F
Sbjct: 117 FRILVPAQKVGAVIGRKGEFIKKMCEESRARIKVLDGPPGVPDRASFDYRMKIPVKKLHM 176
Query: 213 -------YVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE---KTYNASI 262
D+R+VE+QGE V KA+E + HLRKFLVD+ VLPLFE K +NA
Sbjct: 177 LSESVPPVALSDDRVVEIQGEPLDVHKAVELIASHLRKFLVDRSVLPLFEMQMKVHNAHR 236
Query: 263 SQERQVETWADKSSLHAATQSAIST--------EYTPSTRRESLFLEREPQLESRYRLSG 314
Q + ++ P ++ + + + G
Sbjct: 237 EQPMPPPQTWGPPPPWGHPSNVPPGGPGYGGNPQFMPPRPQDHYYPPPDVPPVEKQPHYG 296
Query: 315 ISIYGQDPALSTIRSSALGRASGPI-VTQITQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
IS YG+D A T A G P +QIT +MQ+P+SYA+ +IG G SI IRR SG
Sbjct: 297 ISSYGRD-APPTGAPPASGNQHPPHGSSQITHSMQVPLSYADAVIGAAGASISYIRRHSG 355
Query: 374 AIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
A I++QE G+P E+TVEI G++SQVQ AQQLI+
Sbjct: 356 ATISIQE--GVPGEMTVEISGSASQVQTAQQLIK 387
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 60/96 (62%), Gaps = 10/96 (10%)
Query: 38 TIGSENTEHTTESDSALPQSTGP----------DAAAVPEEKKWPGWPGHCVFRMIVPVL 87
I N H E D A+P G A AV +EKKWPGWPG VFR++VP
Sbjct: 65 NINDGNVGHQHEEDQAIPSEEGHAYGGEAQGEQQANAVTDEKKWPGWPGESVFRILVPAQ 124
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDR 123
KVG++IGRKGE IKK CE++RARIKVLDGP PDR
Sbjct: 125 KVGAVIGRKGEFIKKMCEESRARIKVLDGPPGVPDR 160
>gi|449436912|ref|XP_004136236.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
gi|449522219|ref|XP_004168125.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 693
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 176/388 (45%), Gaps = 34/388 (8%)
Query: 56 QSTGPDAAAVPEEKKWPGW--PGHCV--FRMIVPVLKVGSIIGRKGELIKKTCEDTRARI 111
S+ P A E PG P H + +R++ P +VG++IG+ G ++K +DT I
Sbjct: 312 HSSAPSLAPKQYEACIPGRSKPSHEILSYRLLCPTERVGNVIGKGGAIVKTLQQDTGCDI 371
Query: 112 KVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKA-SGAAFCS 170
KV+DG + S DRI+L++G P+ +SP DA RV R+ V A A S
Sbjct: 372 KVVDGALDSEDRIILVAGPAHPDDRISPVQDAVFRVQARI-------VKAAADSKEQNLV 424
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
R LV S Q L+GK GS+I +++++GA +R+L ++ P EDE +V++ GE V
Sbjct: 425 ARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQINGEPETV 484
Query: 231 LKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQ---------ERQVETWADKSSLHAAT 281
A+ + LR + + A I + R++ SSL +
Sbjct: 485 QDAMFQITTRLRHHFFRDAFPSVNSHSNPAFIDRLPSFPSYFGRRELSPPGIYSSLGPSF 544
Query: 282 Q--SAISTEYTPSTRRESL--FLER--EPQLESRYRLSGISIYGQDPALSTI------RS 329
A+S + S R+ FL R P L R S + LS R
Sbjct: 545 HKFDALSGIPSLSDLRDDRPPFLHRPGAPLLSDRKPWSSQGLVEGGVGLSDFAGAHHRRI 604
Query: 330 SALGRASGP-IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEI 388
+ G + P I+T T + +P + I G G ++ IR+ S A IT+ E + E
Sbjct: 605 AGFGGGNSPAIITSTTVEVVVPRNIVPVICGENGECLKQIRQISDAKITITEPKQGDVET 664
Query: 389 TVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+ I GT Q AQ LIQ ++ + ES
Sbjct: 665 MIIISGTPEQTHAAQSLIQAFVISETES 692
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 51/216 (23%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG----- 129
PG+ VFR++ PV ++ S++GR G+ + K E+T I+V D +RI +I G
Sbjct: 43 PGYAVFRVLFPVSRIDSLVGRDGDGLSKIREETGVEIRVEDTIPGCDERIAVIGGSNQET 102
Query: 130 -----------------------------KEEPEAPVSPAMDAAVR----------VF-- 148
KE+ ++P P DA + +F
Sbjct: 103 EVNPEKKSKEDNKNSEVEENDGDIAKLKKKEDKDSP--PVEDAKQKEVTHSQLRKALFLV 160
Query: 149 --KRVSGLPEND-VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL 205
K PE D D + +RLLV S+Q L+GK GS++K + +SGA +R+L
Sbjct: 161 SEKIFDEEPEADGTDVEGDKLPTFILRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRIL 220
Query: 206 SADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
D+ P +V + +V++ G V KALE V L
Sbjct: 221 PRDKLPPFVATNVELVQISGGIDVVKKALELVFQQL 256
>gi|356518382|ref|XP_003527858.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 676
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 163/359 (45%), Gaps = 30/359 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
FR++ P +VG+IIG+ G +IK ++T + IKVL+ P S D +++ISG PE +SP
Sbjct: 327 FRLLCPAERVGNIIGKGGAIIKTVQQETASEIKVLEAPPDSEDCVIVISGPAHPEDRISP 386
Query: 140 AMDAAVRVFKRVSG-LPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
+A RV R++ +P DAK R LV STQ L+GK GS+I +++ S
Sbjct: 387 VQEAVFRVQTRIAKPIP----DAKDH---IMLARFLVSSTQIGCLLGKGGSIITEMRKKS 439
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF-------------- 244
GA +R+L D+ P +EDE ++++ GE V AL + L+
Sbjct: 440 GAHIRILGKDKVPKCASEDEEVIQVNGEIEAVHDALLQITTRLKHHCFRDSYPSVNYPSN 499
Query: 245 --LVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESL---F 299
+DQ LP F ++ + HA + S R L
Sbjct: 500 SPFLDQ--LPPFPPYLGRRGLSPPRMYSDLGHPHPHAGFPLDDRPPFLNSIHRPGLPPHI 557
Query: 300 LEREPQLESRYRLSGISIYGQD-PALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
ER+P GI I D P R S S PI+T T + +P + I
Sbjct: 558 SERKPWGPQGILEGGIPIGLPDFPGGPPRRISGFAGGSQPIITSTTVEVVVPRAVVPVIY 617
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
G G ++ I + S A IT+ + + E + I GT Q AQ LIQ ++ + +ES+
Sbjct: 618 GEDGECLKQILQISDANITITDPKPGTVETKIIISGTPEQTHAAQSLIQAFVMSERESV 676
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 150/375 (40%), Gaps = 84/375 (22%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG----- 129
PG VFR++ ++G +IG+ G +I + ++T ++++ + +R++ ISG
Sbjct: 31 PGSVVFRLLCHASRIGGVIGKGGSIISQIRQETGVKLRIEEAVPGCDERVITISGSEKET 90
Query: 130 ------------------------------------KEEPEAPV---------SPAMDAA 144
+E+ PV S A
Sbjct: 91 EEDNTEQGKEVNDNDDGGSEGKDREEKDDGDGNEDKREKDAVPVEDSKSEKGNSAIWKAI 150
Query: 145 VRVFKR-VSGLPEN-DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASV 202
VF+R V G+ E + D +++ + +RLL+ + Q ++GK GS+IK + SGA +
Sbjct: 151 SLVFERMVEGVEETTEGDEESNKPSSFFLRLLILTAQVGCVLGKGGSVIKRMAAESGAQI 210
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASI 262
R+L D+ P + + IV++ G V KAL+ S+
Sbjct: 211 RILPKDKLPACASASDEIVQISGSVEVVRKALQ-------------------------SV 245
Query: 263 SQERQVETWADKSSLHAATQSAIST---EYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
SQ+ D SL A + S ++ P R S + EP + +S + +
Sbjct: 246 SQQLLENPPRDHDSLSAKSTGPSSHSFGQFPPHNR--SFSAQGEPFASGPHDIS--AFHS 301
Query: 320 QDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ 379
P + +A+ P+ +T + P +IIG GG I+ +++ + + I V
Sbjct: 302 AAPLIPKFHEAAIHGRMRPLQEMLTFRLLCPAERVGNIIGKGGAIIKTVQQETASEIKVL 361
Query: 380 ESRGLPDEITVEIKG 394
E+ ++ + I G
Sbjct: 362 EAPPDSEDCVIVISG 376
>gi|356528011|ref|XP_003532599.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 433
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 167/337 (49%), Gaps = 29/337 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
FR+I +VG++IG+ G +++ ++ A I V V DR+V I+ E PE+ SP
Sbjct: 115 FRIICSNDRVGAVIGKGGSIVRALQNESGAIISVGPSLVECEDRLVTITASENPESTYSP 174
Query: 140 AMDAAVRVF-KRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A A V VF K V E ++ + + + RL+VPS Q L+GK G+++ +++ +
Sbjct: 175 AQKAVVLVFSKSVEAGVEKGLELGSKKEPYVTARLVVPSNQVGCLLGKGGAIVSEMRKAT 234
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
GA++RV+ D+ P V++++++V++ G + V A+ G LR LF T
Sbjct: 235 GANIRVIGNDQVPMCVSDNDQLVQISGVFSNVQAAIHNATGRLRDH--------LFVSTQ 286
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
N+ ++ SS+ A Q ++ + S R SL P L++ ++GI+
Sbjct: 287 NSGGAR--------SLSSVLAGGQPTLAISH--SLNRHSL-----PGLQAPQTVAGINSR 331
Query: 319 GQDPALSTI--RSSALGRASG---PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
G + + R L SG IVT T + +P + G G+++ +R+ SG
Sbjct: 332 GTNGVSRGLISRKGGLELISGSKTAIVTNTTVQIVVPDDVIGSVYGENGSNLARLRQISG 391
Query: 374 AIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
A + V E R + T+ I GT + + AQ L+Q ++
Sbjct: 392 AKVIVHEPRPGTSDRTIIISGTPDETRAAQSLLQAFI 428
>gi|356507955|ref|XP_003522728.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 678
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 165/361 (45%), Gaps = 34/361 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
FR++ PV +VG+IIG+ G +IK ++T + IKVL+ P S D +++ISG PE VSP
Sbjct: 329 FRLLCPVERVGNIIGKGGAIIKTVQQETVSEIKVLEAPPDSEDCVIVISGPAHPEDRVSP 388
Query: 140 AMDAAVRVFKRVSG-LPE-NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
+A RV R++ +P+ ND A R LV S Q L+GK GS+I +++
Sbjct: 389 VQEAVFRVQTRIAKPIPDANDHTMLA--------RFLVSSNQIGCLLGKGGSIITEMRKK 440
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKT 257
SGA +R+L D+ P +EDE ++++ GE V +AL + L+ + +
Sbjct: 441 SGAHIRILGKDKVPKCASEDEEVIQVNGEIEAVHEALLQITTRLKHHFFRDSYPSVNYPS 500
Query: 258 YNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGI-- 315
+ + Q + + L + + ++ P L+ P + G+
Sbjct: 501 NSPFLDQLPPFPPYLGRRGL---SPPGMYSDLGPPPSHAGFPLDDRPAFLNNIHRPGLPP 557
Query: 316 SIYGQDP--ALSTI-----------------RSSALGRASGPIVTQITQTMQIPISYAED 356
I + P L + R S S PI+T T + +P +
Sbjct: 558 HISQRKPWGPLGVLEGGTPIGLPDFPRGPPRRISGFAGGSQPIITSTTVEVVVPRAVVPV 617
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
I G G ++ I + S A IT+ + + E + I GT Q AQ LIQ ++ + +ES
Sbjct: 618 IYGEDGECLKQILQISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERES 677
Query: 417 I 417
+
Sbjct: 678 V 678
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/377 (22%), Positives = 151/377 (40%), Gaps = 86/377 (22%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG----- 129
PG VFR++ ++GS+IG+ G +I + +T ++K+ + +R++ ISG
Sbjct: 31 PGSVVFRLLCHASRIGSVIGKGGSIISQIRLETGVKVKIEEAVPGCDERVITISGSDKEA 90
Query: 130 -------------------------------------KEEPEA-PV---------SPAMD 142
KEE +A PV S
Sbjct: 91 EEYTAEQGKEVNDNDDVGSEGKDGEEKNGSDGNGNEDKEEKDAVPVEDSKSEKGNSAIWK 150
Query: 143 AAVRVFKR-VSGLPE---NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A VF+R V G+ E D ++ S + F +RLL+ + Q ++GK GS+IK + S
Sbjct: 151 AISLVFERMVEGVEETTEGDEESNKSSSFF--LRLLILTAQVGCVLGKGGSVIKRMAAES 208
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
GA +R+L D+ P + + IV++ G V KAL+
Sbjct: 209 GAQIRILPKDKVPVCASAFDEIVQISGSVEVVRKALQ----------------------- 245
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTP-STRRESLFLEREPQLESRYRLSGISI 317
S+SQ+ D SL A + S + S + EP + +S +
Sbjct: 246 --SVSQQLLENPPRDHESLSAKSTGPSSHSFGQFPPHNHSFAAQGEPFATGPHDIS--AF 301
Query: 318 YGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIIT 377
+ P + +A+ + P+ +T + P+ +IIG GG I+ +++ + + I
Sbjct: 302 HSAPPLIPKFHEAAIHGRTRPLQEMLTFRLLCPVERVGNIIGKGGAIIKTVQQETVSEIK 361
Query: 378 VQESRGLPDEITVEIKG 394
V E+ ++ + I G
Sbjct: 362 VLEAPPDSEDCVIVISG 378
>gi|356546743|ref|XP_003541782.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 663
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 180/359 (50%), Gaps = 40/359 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV--SSPDRIVLISGKEEPEAPV 137
FR++ +VG +IG+ G +++ +T A I + GP+ DR++ I+ E PE+
Sbjct: 313 FRILCSNDRVGGVIGKGGNIVRALQSETGATISI--GPLVAECEDRLITIAASENPESRY 370
Query: 138 SPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
SPA AAV VF R + E ++D+ + + +VRL+VPS+Q LIGK G ++ I++
Sbjct: 371 SPAQKAAVLVFSRSIEVGFEKELDSGLNKGSTVTVRLVVPSSQVGCLIGKGGVIVSEIRK 430
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
+GA++R++ D+ P ++++++V++ GE + V AL G LR LF
Sbjct: 431 ATGANIRIIGTDQVPKCASDNDQVVQISGEFSSVQDALYNATGRLRD--------NLFVS 482
Query: 257 TYNA----SISQERQVET--------WADKSSLHAATQSAISTEYTPSTRRESLFLERE- 303
T N+ S+S R V+T + S AT S + +T + + L L R
Sbjct: 483 TQNSAGTRSLSSLR-VDTSPYGIQQDFVPHGSQLPATTSHCLSRHTFAQGIDHLGLSRNL 541
Query: 304 -----PQLESR-YRLSGISIYG-QDPALS-TIRSSALGRASG---PIVTQITQTMQIPIS 352
P L +R L+GI+ D +L T R L SG IVT T + +P
Sbjct: 542 DHPSSPGLWTRNLDLAGINSRSINDFSLGLTSRKGGLELVSGSKSAIVTNTTVEIVVPDD 601
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQESR-GLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ + G G ++ +R+ SGA + + E R G D I V I GT + Q AQ L+Q ++
Sbjct: 602 TIDCVYGENGRNLVRLRQISGAKVVIHEPRPGTSDRIIV-ISGTPDETQAAQSLLQAFI 659
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 98/177 (55%), Gaps = 12/177 (6%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG------ 129
GH FR++ ++G +IG+ G +IK + T A+I++ D P SPDR++L+
Sbjct: 43 GHVAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQESPDRVILVIADAALSC 102
Query: 130 ----KEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIG 185
+ E VS A +A ++VF R+ + +++ G S RL+ S QA ++IG
Sbjct: 103 KVLLRNEEVVEVSKAQEALLKVFDRILEVAA-EMEGVDVGDRVMSCRLVADSAQAGSVIG 161
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
K G +++ I++ +G +RVL+ D+ P + + ++E++G + V KAL AV L+
Sbjct: 162 KGGKVVERIKKETGCKIRVLT-DDLPLCASASDEMIEIEGRVSSVKKALVAVSQRLQ 217
>gi|294460497|gb|ADE75825.1| unknown [Picea sitchensis]
Length = 113
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 77/103 (74%), Gaps = 4/103 (3%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
MQIP+SYA+D+IGV GT+I +RR SGA IT+QE+RG+P EITVEIKGT++QVQ AQ LI
Sbjct: 1 MQIPLSYADDVIGVEGTNIGYMRRASGATITIQETRGVPSEITVEIKGTNTQVQTAQHLI 60
Query: 407 QEYMNNHKESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQP 449
Q +M + IT + +D GY SY Q NS YPSS++S+ P
Sbjct: 61 QNFMAGGHKKITHN---VDAGY-GSYAQNSNSFYPSSTVSSHP 99
>gi|110349919|emb|CAJ19273.1| putative RNA binding protein [Solanum commersonii]
Length = 184
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 101/183 (55%), Gaps = 14/183 (7%)
Query: 237 VVGHLRKFLVDQGVLPLFEKTYNASISQERQ-------VETWADKSSLHAATQSA----I 285
+ GHLRKFLVD+ V+ LFEK + Q + W S +
Sbjct: 2 IAGHLRKFLVDRSVIGLFEKLMQMPNAHAHQNMPPPGPTQPWGPPPSSFPMSAGGPGYGA 61
Query: 286 STEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQ 345
+ +Y R+ + R + + G +YG+D +++ + + IV+++TQ
Sbjct: 62 NHQYMLPPRQFDNYFPRVDMHQDKQPHQGPPVYGRD---ASVGAHGNAQPQQSIVSKVTQ 118
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQL 405
+QIP+SYA+ +IG G++I IRR SGA I VQE+RG+P E+TVEI G++SQVQ AQQL
Sbjct: 119 NIQIPLSYADAVIGASGSNISYIRRASGATIAVQETRGVPGEMTVEINGSASQVQTAQQL 178
Query: 406 IQE 408
+Q+
Sbjct: 179 VQD 181
>gi|255645221|gb|ACU23108.1| unknown [Glycine max]
Length = 208
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 106/177 (59%), Gaps = 11/177 (6%)
Query: 287 TEYTPSTRR-ESLFLERE-PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQIT 344
++Y P R+ +S + E P R GIS YG+D ++ + +S+ +++ IVTQIT
Sbjct: 27 SQYMPPPRQLDSYYPSAEMPPPVDRQPHQGISAYGRDASIG-VHASSNTQSAPSIVTQIT 85
Query: 345 QTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQ 404
Q MQIP+SYA+ +IG G SI IRR SGA +T+QE+RG+P E+TVEI GT+SQVQ AQQ
Sbjct: 86 QQMQIPLSYADAVIGTAGASISYIRRASGATVTIQEARGVPGEMTVEISGTASQVQTAQQ 145
Query: 405 LIQEYMNNHKESIT------SSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPYGGYGS 455
LIQ +M + ++ D GY SYP G S Y S + GGYGS
Sbjct: 146 LIQNFMAEAAAAAAAPAQPQTTVPAADQGYN-SYPAHG-SVYASPPSNPGHAGGYGS 200
>gi|242055819|ref|XP_002457055.1| hypothetical protein SORBIDRAFT_03g000560 [Sorghum bicolor]
gi|241929030|gb|EES02175.1| hypothetical protein SORBIDRAFT_03g000560 [Sorghum bicolor]
Length = 716
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 155/339 (45%), Gaps = 27/339 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
FRM+ P KVGSIIG+ G ++K +DT IKVLD S DRI+ ISG P +SP
Sbjct: 390 FRMLCPQDKVGSIIGKGGNIVKTIQKDTGCEIKVLDTVPKSEDRIISISGPAHPSDGISP 449
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A +A + V +++ LP +D K G A C RL+V + Q ++GK GS+I +++ SG
Sbjct: 450 AQNAILHVQRKIM-LPTSD---KKEGPAIC--RLIVSANQVGCVLGKGGSIIAEMRKLSG 503
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
A + VLS D+ P V E + +V++ G + +AL + LR L +P
Sbjct: 504 AFIIVLSKDKIPRGVPEHDEVVQISGSCEAIQEALMQITARLRNHLFRVDRMPAMGPNMR 563
Query: 260 ASIS-QERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
+ Q +A +PS + + + + + G+
Sbjct: 564 PPFGLLDSQFGPFA-------------GNHESPSLFHKDFMGRPLDGISAPWTVKGMRDL 610
Query: 319 GQDPALSTIRSSA---LGRASGP----IVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
++S I + G SGP ++ +T + +P + G ++ IR
Sbjct: 611 SDPLSISDIPGAGHREAGGFSGPGQPSMMPNLTAEVLVPRLIIPALCSEDGGCLDRIREF 670
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
S A ITV E +I V I GT Q+ A+ L+Q ++
Sbjct: 671 SEAKITVAEPIADAMDIPVLISGTPDQMHAARSLVQAFV 709
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 122 DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAF-CSVRLLVPSTQA 180
D V + EPE + A+ A VF R+ +N+ AS A+ S+RLLV +QA
Sbjct: 196 DPFVAKVAESEPERVIPSALKAISLVFDRIFAAGDNNETGNASAASTPVSLRLLVLYSQA 255
Query: 181 INLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
L+GK GS+IK + ++G +RVL D P ++++ ++ GE V K L AV
Sbjct: 256 GWLLGKGGSVIKQMSADNGCEIRVLR-DNLPSCALLNDKLCQITGEIDSVRKGLNAV 311
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P + ++ PG FR++ P K G++IG+ G +I K E+TR RI+V +R++
Sbjct: 33 PHKSQFKIEPGVPFFRILCPASKSGNVIGKGGAIIAKIREETRMRIRVDRAAPGCDERVI 92
Query: 126 LISGKEEPE 134
I+ ++ E
Sbjct: 93 FITAVDKDE 101
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEA 227
S R+L P + ++IGK G+++K+IQ+++G ++VL D P ++RI+ + G A
Sbjct: 389 SFRMLCPQDKVGSIIGKGGNIVKTIQKDTGCEIKVL--DTVP---KSEDRIISISGPA 441
>gi|147789223|emb|CAN69138.1| hypothetical protein VITISV_022038 [Vitis vinifera]
Length = 569
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 169/347 (48%), Gaps = 23/347 (6%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD-RIVLISGKEEPEAPV 137
+F+++ +VG +IG+ G ++K + A I V PV+ D R++ I+ E PE+
Sbjct: 221 IFKILCSNDRVGGVIGKGGTIVKALQNEAGASISV-GAPVAECDERLITITASENPESRY 279
Query: 138 SPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
SPA + + VF R + E +D+ + G+ S RL+VPS Q L+GK G++I +++
Sbjct: 280 SPAQNGVILVFNRSIEAGIEKGLDSGSKGSP-VSARLVVPSNQVGCLMGKGGTIISEMRK 338
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
SGA +R++ +D+ P +E++++V++ GE V L + G LR L L
Sbjct: 339 ASGAGIRIIGSDQVPKCASENDQVVQISGEFVNVQDGLYHITGRLRDNLFPSKTLNGAGI 398
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLS--- 313
++++++ D +S + +S PS R + + L + L
Sbjct: 399 RSSSAMNEISPYGRVRDPASFGLHSSVGVS----PSFSRHTTLTQSMDHLGLSHSLDHPT 454
Query: 314 ------GISIYGQDPALSTIRSSA-LGRAS-GPIVTQITQTMQIPISYAEDIIGVGGTSI 365
++ G +P I+ LG S I+T T + IP + + G G ++
Sbjct: 455 SPRLWPSQTVTGVNP--RNIKGGIELGSGSKSAIITNTTVEIVIPENVIGSVYGENGNNL 512
Query: 366 ENIRRTSGAIITVQESR-GLPDEITVEIKGTSSQVQLAQQLIQEYMN 411
+R+ SGA +T+ E R G D I + I GT + Q AQ L+Q +++
Sbjct: 513 ARLRKISGAKVTLHEPRPGTSDRIVI-ISGTPDETQAAQSLLQAFIH 558
>gi|224067136|ref|XP_002302373.1| predicted protein [Populus trichocarpa]
gi|222844099|gb|EEE81646.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 165/367 (44%), Gaps = 33/367 (8%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
P FR++ +VG +IG+ G +IK ++T IKV++G S DR+++ISG P+
Sbjct: 321 PDVLTFRLLCHNERVGGVIGKGGTIIKILKQETGCDIKVMEGVSDSEDRVIVISGLAHPD 380
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+S DA +RV R++ N A + RLLV S Q L+GK G+++ +
Sbjct: 381 DRISAPQDAVIRVQTRIAMAISNKEKAIIA-------RLLVSSNQIGCLLGKGGAIMSEM 433
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+++SGA +R+L D+ P +E E +V++ GE V +AL + LR Q + P
Sbjct: 434 RKSSGAYIRILGKDQIPNCASESEGVVQINGEFEVVKEALLQITTRLRHHFF-QNLFPSM 492
Query: 255 EKTYN-ASISQERQVETWADKSSLHAATQSAISTE-------------------YTPSTR 294
+ N A + Q + + L S + + + +
Sbjct: 493 DHLSNPAFLDQVPPFPPYMGRKELSPPFHSFPNFDGMVGAPPHVSFPPHDDHPPFMHNIH 552
Query: 295 RESL---FLEREPQLESRYRLSGISIYGQDPALSTIRS-SALGRASGP-IVTQITQTMQI 349
R + ER+P + G + D A R S G S P I+T T + +
Sbjct: 553 RPGMPPHIAERKPWGPQGFVEGGGPMGLPDFAGPPQRRISGFGGVSHPAIITSTTIEVIV 612
Query: 350 PISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEY 409
P + I G G ++ IR+ S A IT+ E + E + I GT Q AQ LIQ +
Sbjct: 613 PRTIVPVIYGEDGACLKQIRQISDAKITINEPKPGASETVIIISGTPEQTHAAQSLIQAF 672
Query: 410 MNNHKES 416
+ + +ES
Sbjct: 673 VMSERES 679
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 47/214 (21%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEP- 133
P VFR++ P K+G++ G G +I + ++T A++ V + ++I++I+G +E
Sbjct: 42 PAAVVFRILCPAPKIGTVTGEGGAVISQIRQETGAKVIVEENIPGCDEQIIVITGSDEKT 101
Query: 134 -------------EAPVSPAMDA---AVRVFKRVSGLPENDVDAKASGAAFCSVRLLV-- 175
EA V+ D + G+P D ++ LLV
Sbjct: 102 EVSIEQSKKDGDEEANVAEESDNKNDGNEKEEEKEGVPVEDSGTVKETSSMQKALLLVSG 161
Query: 176 ------------------PST----------QAINLIGKQGSLIKSIQENSGASVRVLSA 207
PST Q L+GK GS+IK + SGA +R+
Sbjct: 162 KMFEADPVTDGGDEENNKPSTFILRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRISPR 221
Query: 208 DEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
D P + + +VE+ GE V KAL++V L
Sbjct: 222 DRLPICSSVSDELVEITGEIDAVRKALQSVSKQL 255
>gi|225464083|ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 648
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 171/349 (48%), Gaps = 27/349 (7%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD-RIVLISGKEEPEAPV 137
+F+++ +VG +IG+ G ++K + A I V PV+ D R++ I+ E PE+
Sbjct: 300 IFKILCSNDRVGGVIGKGGTIVKALQNEAGASISV-GAPVAECDERLITITASENPESRY 358
Query: 138 SPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
SPA + + VF R + E +D+ + G+ S RL+VPS Q L+GK G++I +++
Sbjct: 359 SPAQNGVILVFNRSIEAGIEKGLDSGSKGSPV-SARLVVPSNQVGCLMGKGGTIISEMRK 417
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
SGA +R++ +D+ P +E++++V++ GE V L + G LR L L
Sbjct: 418 ASGAGIRIIGSDQVPKCASENDQVVQISGEFVNVQDGLYHITGRLRDNLFPSKTLNGAGI 477
Query: 257 TYNASISQERQVETWADKSS--LHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLS- 313
++++++ D +S LH+ S +PS R + + L + L
Sbjct: 478 RSSSAMNEISPYGRVRDPASFGLHS------SVGVSPSFSRHTTLTQSMDHLGLSHSLDH 531
Query: 314 --------GISIYGQDPALSTIRSSA-LGRAS-GPIVTQITQTMQIPISYAEDIIGVGGT 363
++ G +P I+ LG S I+T T + IP + + G G
Sbjct: 532 PTSPRLWPSQTVTGVNP--RNIKGGIELGSGSKSAIITNTTVEIVIPENVIGSVYGENGN 589
Query: 364 SIENIRRTSGAIITVQESR-GLPDEITVEIKGTSSQVQLAQQLIQEYMN 411
++ +R+ SGA +T+ E R G D I + I GT + Q AQ L+Q +++
Sbjct: 590 NLARLRKISGAKVTLHEPRPGTSDRIVI-ISGTPDETQAAQSLLQAFIH 637
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 23/178 (12%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-------- 127
GH FR++ ++G +IG+ G ++K+ DT ARI+V D P +S R++L+
Sbjct: 49 GHVAFRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDSPSTSDHRVILVIAPASVNR 108
Query: 128 -----SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASG---AAFCSVRLLVPSTQ 179
EE EA S A +A +RVF+R+ +V A G S RLL ++Q
Sbjct: 109 RIALQGSSEEVEA--SAAQEAVLRVFERIL-----EVAAVVDGVPPGGVVSCRLLAETSQ 161
Query: 180 AINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
++IGK G +++ I+ SG+ ++VL+A++ P + +VE++G+ V KAL AV
Sbjct: 162 VGSVIGKGGKVVEKIRRESGSKIKVLTAEKLPTCAASTDEMVEIEGDVLAVKKALVAV 219
>gi|296088778|emb|CBI38228.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 169/347 (48%), Gaps = 23/347 (6%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD-RIVLISGKEEPEAPV 137
+F+++ +VG +IG+ G ++K + A I V PV+ D R++ I+ E PE+
Sbjct: 237 IFKILCSNDRVGGVIGKGGTIVKALQNEAGASISV-GAPVAECDERLITITASENPESRY 295
Query: 138 SPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
SPA + + VF R + E +D+ + G+ S RL+VPS Q L+GK G++I +++
Sbjct: 296 SPAQNGVILVFNRSIEAGIEKGLDSGSKGSPV-SARLVVPSNQVGCLMGKGGTIISEMRK 354
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
SGA +R++ +D+ P +E++++V++ GE V L + G LR L L
Sbjct: 355 ASGAGIRIIGSDQVPKCASENDQVVQISGEFVNVQDGLYHITGRLRDNLFPSKTLNGAGI 414
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLS--- 313
++++++ D +S + +S PS R + + L + L
Sbjct: 415 RSSSAMNEISPYGRVRDPASFGLHSSVGVS----PSFSRHTTLTQSMDHLGLSHSLDHPT 470
Query: 314 ------GISIYGQDPALSTIRSSA-LGRAS-GPIVTQITQTMQIPISYAEDIIGVGGTSI 365
++ G +P I+ LG S I+T T + IP + + G G ++
Sbjct: 471 SPRLWPSQTVTGVNP--RNIKGGIELGSGSKSAIITNTTVEIVIPENVIGSVYGENGNNL 528
Query: 366 ENIRRTSGAIITVQESR-GLPDEITVEIKGTSSQVQLAQQLIQEYMN 411
+R+ SGA +T+ E R G D I + I GT + Q AQ L+Q +++
Sbjct: 529 ARLRKISGAKVTLHEPRPGTSDRIVI-ISGTPDETQAAQSLLQAFIH 574
>gi|359489188|ref|XP_002272998.2| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 343
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 175/388 (45%), Gaps = 73/388 (18%)
Query: 28 SPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVL 87
+P +SEAP + + + D + S + A K +FR++VP
Sbjct: 10 TPIPQSEAPAPSEPTSMKRPRDDDGGVIASATGEVADDHRSPKRRAKNQDVLFRIVVPSR 69
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
++G +IG++G I+K E+T+A IK+ D +R+++IS K+ E +S A +A ++V
Sbjct: 70 QIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISSKDS-ENVISDAENALLQV 128
Query: 148 FKRVSGLPENDVDAKASGAAFC---SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+ +++ DA G ++RLL+ +QA LIG G I+ ++ +SGA++ +
Sbjct: 129 ASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATITI 188
Query: 205 LSADEAPFYVT--EDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASI 262
L ++ P + + +R+V++ G+ VLKALE + LR+
Sbjct: 189 LPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLRE------------------- 229
Query: 263 SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDP 322
+ RQV +IS Y P+T R S +Y DP
Sbjct: 230 NPPRQV--------------ISISPIYNPNTNRTS----------QQYL---------DP 256
Query: 323 ALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR 382
A + +T M IP + +IG G++I IR SGA+I V +
Sbjct: 257 ASADY---------------VTLNMMIPETLVGGLIGRCGSNISRIRNESGAMIKVYGGK 301
Query: 383 GLPDEITVEIKGTSSQVQLAQQLIQEYM 410
G + ++ G++ QV LA+Q + EY+
Sbjct: 302 GEQNHRQIQFGGSAQQVALAKQRVDEYI 329
>gi|297734587|emb|CBI16638.3| unnamed protein product [Vitis vinifera]
Length = 346
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 175/388 (45%), Gaps = 73/388 (18%)
Query: 28 SPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVL 87
+P +SEAP + + + D + S + A K +FR++VP
Sbjct: 10 TPIPQSEAPAPSEPTSMKRPRDDDGGVIASATGEVADDHRSPKRRAKNQDVLFRIVVPSR 69
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
++G +IG++G I+K E+T+A IK+ D +R+++IS K+ E +S A +A ++V
Sbjct: 70 QIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISSKDS-ENVISDAENALLQV 128
Query: 148 FKRVSGLPENDVDAKASGAAFC---SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
+ +++ DA G ++RLL+ +QA LIG G I+ ++ +SGA++ +
Sbjct: 129 ASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATITI 188
Query: 205 LSADEAPFYVT--EDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASI 262
L ++ P + + +R+V++ G+ VLKALE + LR+
Sbjct: 189 LPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLRE------------------- 229
Query: 263 SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDP 322
+ RQV +IS Y P+T R S +Y DP
Sbjct: 230 NPPRQV--------------ISISPIYNPNTNRTS----------QQYL---------DP 256
Query: 323 ALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR 382
A + +T M IP + +IG G++I IR SGA+I V +
Sbjct: 257 ASADY---------------VTLNMMIPETLVGGLIGRCGSNISRIRNESGAMIKVYGGK 301
Query: 383 GLPDEITVEIKGTSSQVQLAQQLIQEYM 410
G + ++ G++ QV LA+Q + EY+
Sbjct: 302 GEQNHRQIQFGGSAQQVALAKQRVDEYI 329
>gi|357128987|ref|XP_003566150.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 729
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 168/368 (45%), Gaps = 33/368 (8%)
Query: 53 ALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIK 112
A P + A+VP E FR++ KVGSIIG+ G IK +DT IK
Sbjct: 378 AFPDALMHSHASVPPEP--------LTFRLLCSSDKVGSIIGKGGNNIKTIQKDTGCEIK 429
Query: 113 VLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVR 172
+L+ S DR+++ISG P +SPA +A + V +R++ N+ + GAA R
Sbjct: 430 ILETVPKSEDRVIVISGPAHPGDGISPAQNAILHVQRRITPPTANNKE----GAAIS--R 483
Query: 173 LLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLK 232
L+V Q L+GK GS+I +++ S A + VLS D+ P V E + +V++ G++ + +
Sbjct: 484 LIVSPNQVGCLLGKGGSIIAEMRKLSKAHIVVLSKDKIPKGVQESDEVVQITGDSEAIQE 543
Query: 233 ALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPS 292
AL + LR L + + S + Q +A H +T I Y +
Sbjct: 544 ALMQITARLRNHLFRDRMAAMGPNMQPPFGSLDPQFGAFAGS---HESTSPRI---YPNA 597
Query: 293 TRRESLFLERE-PQLESRYRLSGISIYGQDPALSTIRS---------SALGRASGPIVTQ 342
++ F+ R ++ + + G+ G ++S + S G +S P
Sbjct: 598 SQFHKDFMGRPLDEMPAPWNAKGMRDVGDPMSISGMPGMPHRGIGGFSGAGHSSMP---N 654
Query: 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
IT+ + +P + G G + IR SGA+IT E + I GT Q+ A
Sbjct: 655 ITRDIMVPRFVIPALCGHDGGCLNMIREFSGAMITFTEPIADAADTPFMISGTLDQMHAA 714
Query: 403 QQLIQEYM 410
+ LIQ ++
Sbjct: 715 RSLIQAFV 722
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAF-CSVRLLVPSTQAINLIGKQG 188
K EPE + M+A + VF R+ + SG S RLLV +Q L+G +G
Sbjct: 192 KAEPERVLLSPMNAILHVFDRIFITEIGNESGDPSGERTPVSFRLLVLDSQVGWLLGNRG 251
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
S+IK + +SG +RV S ++ P + + ++ GE V K L AV
Sbjct: 252 SVIKQMSADSGCEIRV-SKEKLPLCALLKDELCQITGELDSVRKGLNAV 299
>gi|218187831|gb|EEC70258.1| hypothetical protein OsI_01061 [Oryza sativa Indica Group]
Length = 722
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 177/378 (46%), Gaps = 31/378 (8%)
Query: 49 ESDSALPQSTGPDAAAVPE--EKKWPGW----PGHCVFRMIVPVLKVGSIIGRKGELIKK 102
ESD ++GP+ A +P E G P FR++ KVG IIG+ G IK
Sbjct: 353 ESDVLGAHNSGPNVAHLPNFPEALMHGHGSVPPEPLTFRLLCSSDKVGGIIGKGGNNIKS 412
Query: 103 TCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAK 162
DT IKVLD S DRIV ISG P +SPA +A + V +++ +P ++
Sbjct: 413 IQNDTGCEIKVLDTVPKSEDRIVFISGPAHPGDGISPAQNAILHVQRKI--VPTSNT--- 467
Query: 163 ASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
G A C RL+V Q L+GK GS+I +++ SGA + VLS D+ P V E++ +V+
Sbjct: 468 KEGPAIC--RLIVSPNQVGCLLGKGGSIIAEMRKLSGAHIIVLSKDKIPKGVPENDEVVQ 525
Query: 223 MQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWAD-KSSLHAAT 281
+ G + + +AL + LR LF +++ + D + +A
Sbjct: 526 ISGASEAIQEALMQITARLRNH--------LFRDRMASTVPNVQPPFGLVDPQFGSYAGN 577
Query: 282 QSAISTEYTPST-RRESLFLERE-PQLESRYRLSGISIYGQDPALSTIRSSA---LGRAS 336
+IS P+ + F+ R ++ + + + G+ + G +L I A +G
Sbjct: 578 HDSISPRIFPNVPQFHKDFIGRPLDEMSAPWTMKGMQVVGDPISLPDIPGMAHRGMGGFP 637
Query: 337 GP----IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEI 392
GP IV+ IT + +P + G G + IR SGA ITV + G + + I
Sbjct: 638 GPGQPSIVSTITADVMVPKLVLPSLCGEDGGCLNRIREFSGAKITVADPMGNAMDTAILI 697
Query: 393 KGTSSQVQLAQQLIQEYM 410
GT Q+ A+ LIQ ++
Sbjct: 698 SGTPDQMHAARSLIQAFV 715
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 136/357 (38%), Gaps = 61/357 (17%)
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGA-AFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A+ A + VF R+ + ASG S+RLLV +Q L+GK GS+IK + +S
Sbjct: 245 AVKAILLVFDRIFVNEMENGTGDASGERNHVSLRLLVLDSQVGWLLGKNGSVIKQMSTDS 304
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV--------------------- 237
+RV S D+ P + + ++ GE V K L V
Sbjct: 305 CCEIRV-SKDKLPLCALPRDELCQITGELDSVRKGLNTVAQLLFTHPPKESDVLGAHNSG 363
Query: 238 --VGHLRKF----LVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTP 291
V HL F + G +P T+ S ++ + + Q+ E
Sbjct: 364 PNVAHLPNFPEALMHGHGSVPPEPLTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIK- 422
Query: 292 STRRESLFLEREPQLESRYRL--------SGISIYGQDPALSTIRS--SALGRASGPIVT 341
L+ P+ E R GIS Q+ L R GP +
Sbjct: 423 -------VLDTVPKSEDRIVFISGPAHPGDGIS-PAQNAILHVQRKIVPTSNTKEGPAIC 474
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLP------DEITVEIKGT 395
++ + + ++G GG+ I +R+ SGA I V +P DE+ V+I G
Sbjct: 475 RLI----VSPNQVGCLLGKGGSIIAEMRKLSGAHIIVLSKDKIPKGVPENDEV-VQISGA 529
Query: 396 SSQVQLAQQLIQEYMNNH--KESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPY 450
S +Q A I + NH ++ + S+ + + PQ G+ + S+S + +
Sbjct: 530 SEAIQEALMQITARLRNHLFRDRMASTVPNVQPPFGLVDPQFGSYAGNHDSISPRIF 586
>gi|297596401|ref|NP_001042525.2| Os01g0235800 [Oryza sativa Japonica Group]
gi|56783855|dbj|BAD81267.1| HEN4 -like [Oryza sativa Japonica Group]
gi|255673037|dbj|BAF04439.2| Os01g0235800 [Oryza sativa Japonica Group]
Length = 449
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 149/316 (47%), Gaps = 25/316 (7%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
DT IKVLD S DRIV ISG P +SPA +A + V +++ +P ++
Sbjct: 142 NDTGCEIKVLDTVPKSEDRIVFISGPAHPGDGISPAQNAILHVQRKI--VPTSNT---KE 196
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G A C RL+V Q L+GK GS+I +++ SGA + VLS D+ P V E++ +V++
Sbjct: 197 GPAIC--RLIVSPNQVGCLLGKGGSIIAEMRKLSGAHIIVLSKDKIPKGVPENDEVVQIS 254
Query: 225 GEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWAD-KSSLHAATQS 283
G + + +AL + LR LF +++ + D + +A
Sbjct: 255 GASEAIQEALMQITARLRNH--------LFRDRMASTVPNVQPPFGLVDPQFGSYAGNHD 306
Query: 284 AISTEYTPST-RRESLFLERE-PQLESRYRLSGISIYGQDPALSTIRSSA---LGRASGP 338
+IS P+ + F+ R ++ + + + G+ + G +L I A +G GP
Sbjct: 307 SISPRIFPNVPQFHKDFIGRPLDEMSAPWTMKGMQVVGDPISLPDIPGMAHRGMGGFPGP 366
Query: 339 ----IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKG 394
IV+ IT + +P + G G + IR SGA ITV + G + + I G
Sbjct: 367 GQPSIVSTITADVMVPKLVLPSLCGEDGGCLNRIREFSGAKITVADPMGNAMDTAILISG 426
Query: 395 TSSQVQLAQQLIQEYM 410
T Q+ A+ LIQ ++
Sbjct: 427 TPDQMHAARSLIQAFV 442
>gi|226530329|ref|NP_001151982.1| nucleic acid binding protein [Zea mays]
gi|195651499|gb|ACG45217.1| nucleic acid binding protein [Zea mays]
gi|224029689|gb|ACN33920.1| unknown [Zea mays]
gi|413947861|gb|AFW80510.1| nucleic acid binding protein [Zea mays]
Length = 705
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 152/339 (44%), Gaps = 28/339 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
FRM+ P KVGSIIG+ G ++K DT IKVLD + DRI+ ISG P +SP
Sbjct: 380 FRMLCPQDKVGSIIGKGGNIVKTIQNDTGCEIKVLDTVPKTDDRIISISGPAHPSDGISP 439
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A +A + V +++ LP +D K G A C RL+V Q ++GK GS+I +++ SG
Sbjct: 440 AQNAILHVQRKIM-LPSSD---KKEGPATC--RLIVSGNQVGCVLGKGGSIIAEMRKLSG 493
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
A + VLS D+ P V E + ++++ G + +AL V LR LF
Sbjct: 494 AFIVVLSKDKIPRGVPEHDEVIQINGSCEAIQEALMQVTARLRNH--------LFRDRMP 545
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQ-LESRYRLSGISIY 318
A R D S + S+ F+ R + + + + G+
Sbjct: 546 AVGPNMRPPFGLLDPQF------GPFSGNHESSSLFHKDFMGRPLDGIAAPWTVKGMRDL 599
Query: 319 GQDPALSTIRSSALGRASG-------PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
++S I + A G ++ +T + +P + G G ++ IR
Sbjct: 600 SDPVSISDIPGAGHREAGGFPGPGQPSMMPNLTAEVLVPRLVIPVLCGEDGGCLDRIREF 659
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
S A ITV E + V I GT Q+ A+ L++ ++
Sbjct: 660 SEAKITVAEPTADAMDTAVLISGTPEQMHAARSLVEAFV 698
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 122 DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA-AFCSVRLLVPSTQA 180
D +V K EPE + A+ A VF R+ N+ AS A A S+R+LV +QA
Sbjct: 185 DPLVAKVTKLEPERVIPLALKAVSLVFDRIFATEGNNETGNASAASAPVSLRMLVLYSQA 244
Query: 181 INLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
L+GK GS++K + ++G +RVL D P ++++ ++ GE V K L AV
Sbjct: 245 GWLLGKGGSVVKQMAADNGCEIRVLK-DNLPSCALLNDKLCQITGEIDSVRKGLNAV 300
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P + ++ PG +FR++ P K G++IG+ G +I K ++TR RI+V +R++
Sbjct: 33 PHKSQFKIEPGVPIFRILCPASKSGNVIGKGGAIIAKIRQETRMRIRVDRAAPGCDERVI 92
Query: 126 LISGKEEPE 134
I+ + E
Sbjct: 93 FITAANKDE 101
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEA 227
S R+L P + ++IGK G+++K+IQ ++G ++VL D P D+RI+ + G A
Sbjct: 379 SFRMLCPQDKVGSIIGKGGNIVKTIQNDTGCEIKVL--DTVP---KTDDRIISISGPA 431
>gi|356519471|ref|XP_003528396.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 591
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 169/339 (49%), Gaps = 32/339 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEE-PEAPVS 138
FR+I +VG++IG+ G +++ ++ A I V DR+V I+ E+ PE+ S
Sbjct: 272 FRIICSNDRVGAVIGKGGSIVRALQNESGAIISFGPSLVECEDRLVTITASEQNPESRYS 331
Query: 139 PAMDAAVRVF-KRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PA A V VF K V E +D + ++ + +L+VPS Q L+GK G+++ +++
Sbjct: 332 PAQKAVVLVFSKSVEAGVEKGLDMGSKKESYVTAQLVVPSNQVGCLLGKGGAIVSEMRKA 391
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKT 257
+GA++RV+ D+ P V++++++V++ GE + V A+ G LR LF T
Sbjct: 392 TGANIRVIGNDKVPKCVSDNDQLVQISGEFSNVQAAIYNATGRLRD--------NLFVST 443
Query: 258 YNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGIS- 316
N+ ++ SS+ + + ++ S R SL P L++ ++GI+
Sbjct: 444 QNSGGARSL--------SSVLSGGKPTVAVSL--SLNRHSL-----PGLQAPQTVAGINS 488
Query: 317 --IYGQDPALSTIRSSALGRASG---PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
G L++ + L SG IVT T + +P + G G+++ +R+
Sbjct: 489 RVTNGVSRGLTS-QKGGLELVSGSKTAIVTNTTVQIAVPDDVIGSVYGENGSNLARLRQI 547
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
SGA + V E R + T+ I GT + + AQ L+Q ++
Sbjct: 548 SGAKVIVHEPRPGTSDRTIIISGTPDETRAAQSLLQAFI 586
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 97/174 (55%), Gaps = 11/174 (6%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG-KEE 132
+ H FR++ +VG+IIG+ G LIK E T A+I++ D P SPDR++L+S
Sbjct: 21 YTTHVTFRLLCHASRVGAIIGKSGVLIKTLQEATGAKIRIEDAPPDSPDRVILVSAPAAA 80
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA----FCSVRLLVPSTQAINLIGKQG 188
+ VS A A ++VF RV DV A+ +G S RLL ++Q +IGK G
Sbjct: 81 SDGEVSTAQVALLKVFDRVL-----DVAAETAGTEVGDRVVSCRLLADTSQVGAVIGKAG 135
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+++ I+ ++G +RVL+ + P + IVE++G+ V KAL AV G L+
Sbjct: 136 KVVEKIRMDTGCKIRVLN-EGLPACTAPSDEIVEVEGQLTSVKKALVAVSGCLQ 188
>gi|308804768|ref|XP_003079696.1| putative KH domain containing protein (ISS) [Ostreococcus tauri]
gi|116058152|emb|CAL53341.1| putative KH domain containing protein (ISS), partial [Ostreococcus
tauri]
Length = 709
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 104/384 (27%), Positives = 178/384 (46%), Gaps = 63/384 (16%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+FR++ PV K GS+IGR GE+I++ +T A++KV + ++ +RI+ +S ++ AP+
Sbjct: 344 MFRLLCPVSKTGSVIGRNGEVIQQIRSETGAKVKVCEQINNAEERIICVSSNDDGLAPML 403
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A A RV++ + VD+ S RLLV ++Q LIGK GS+I+ I+ +
Sbjct: 404 AAQVALFRVYRCI-------VDSSGSDVPL-PFRLLVQTSQIGCLIGKGGSIIRQIRNET 455
Query: 199 GASVRVLSADEAPFYVTEDERIVEM-QGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKT 257
GA+VRVL +D P D+ ++E+ Q A + V G LR +
Sbjct: 456 GATVRVLPSDALPACANADDELLEIGQWPADACALGIRIVSGRLRGNM------------ 503
Query: 258 YNASISQERQVETWADKSSLHAATQS-AISTEYTPSTRRESLFLEREPQLESRYRLSGIS 316
+ + E +S++++A+ + ++ + TP+ ++ L + G++
Sbjct: 504 ------RHKAAERLNVESNVYSASMTPTMAVQDTPTLQQSELMMY------------GMT 545
Query: 317 IYGQDPALSTIRSSALGR--ASGPIVTQITQT-MQIPISYAEDIIGVGGTSIENIRRTSG 373
Y +P + + S +L P VT + M I + ++G GG +I R+ SG
Sbjct: 546 AYETEPVDTALASLSLSAPPVEIPGVTTVNSVHMTISSQHIGSVLGRGGCNISIARQVSG 605
Query: 374 AIITVQ--------ESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQID 425
A I + R E +EI GTS QV AQ +I+ + I SS I
Sbjct: 606 ARIKLYPGASGRNGARRAQDSERLLEISGTSEQVSSAQTIIERF-------IASSGAMI- 657
Query: 426 TGYRPSYPQLGNSSYPSSSLSTQP 449
P + LG + + +S P
Sbjct: 658 ----PEFASLGIAGNSGAQVSGVP 677
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 44/209 (21%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEE------- 132
FR++ PV ++G +IG++G +IK +T AR+KV + +R+VL++ EE
Sbjct: 72 FRLLCPVARIGRVIGKEGRVIKALRAETGARVKVAPTTRGADERVVLVASGEELMMDDGD 131
Query: 133 -PEAPVSPAMDAAVRVFKRV--------------------SGLPENDVD----AKASGAA 167
+ PV+ A A R+F V SG+PE+ + G A
Sbjct: 132 GSDVPVTTAERALFRIFDTVASESGGALDGTRDGTSSESGSGVPESSSTGGERSMNGGRA 191
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG-- 225
RLLVP Q +LIGK G++I +I+ +SGA+VR++ A P + + ++++
Sbjct: 192 VPICRLLVPRAQVGSLIGKGGAVISAIRASSGATVRLMPATMLPTCASRGDELLQITAPV 251
Query: 226 ----------EAAKVLKALEAVVGHLRKF 244
A V AL V +LR++
Sbjct: 252 RDTDGNDVDLALASVKSALRMVAKNLREY 280
>gi|294464716|gb|ADE77865.1| unknown [Picea sitchensis]
Length = 348
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 165/356 (46%), Gaps = 27/356 (7%)
Query: 72 PGWPGH-CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGK 130
P + G VFR++ P K+GS+IGR G +IK +D A+IK+ D S +RI++IS
Sbjct: 15 PSFSGEELVFRILCPNKKIGSVIGRAGSIIKSLQDDIGAKIKITDAVPGSDERIIIISAN 74
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGS 189
E E +SPA +A + + ++ L P+ D + +LL+PS Q L+GK G+
Sbjct: 75 EVLEDNLSPAQEALLHIQSQIVDLGPDKD--------GVITTKLLIPSNQTGCLLGKGGA 126
Query: 190 LIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ- 248
+I +++ + A++R+L ++ P + + +V++ G+ AL V LR F+ +
Sbjct: 127 IISEMRKQTRANIRILPREDLPPCALDSDEMVQIVGDIRAARAALVQVTSRLRSFIHREI 186
Query: 249 GVL-PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE-PQL 306
G+ P + S +R++E + S + P R P+
Sbjct: 187 GISGPFLSSSSAPDPSSKRRLEPSSPGRSYSPGLGFQAGSRSLPDAWPSKEISGRNLPEY 246
Query: 307 ESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIE 366
+ R G P S I ++ L VT+ T + IP +I G +
Sbjct: 247 DERATKQG------GPKGSGISTAGL-------VTKTTVEVVIPEHAIAPLIANSGKGVA 293
Query: 367 NIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYG 422
I + SGA + + E R D++ +EI GT Q AQ L+Q ++ N + S S G
Sbjct: 294 QIAQISGAKVNLLEVRPGSDKV-IEISGTPEQTHAAQGLLQAFILNSQSSRGSYSG 348
>gi|222618061|gb|EEE54193.1| hypothetical protein OsJ_01028 [Oryza sativa Japonica Group]
Length = 748
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 149/315 (47%), Gaps = 25/315 (7%)
Query: 106 DTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASG 165
DT IKVLD S DRIV ISG P +SPA +A + V +++ +P ++ G
Sbjct: 442 DTGCEIKVLDTVPKSEDRIVFISGPAHPGDGISPAQNAILHVQRKI--VPTSNT---KEG 496
Query: 166 AAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG 225
A C RL+V Q L+GK GS+I +++ SGA + VLS D+ P V E++ +V++ G
Sbjct: 497 PAIC--RLIVSPNQVGCLLGKGGSIIAEMRKLSGAHIIVLSKDKIPKGVPENDEVVQISG 554
Query: 226 EAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWAD-KSSLHAATQSA 284
+ + +AL + LR LF +++ + D + +A +
Sbjct: 555 ASEAIQEALMQITARLRNH--------LFRDRMASTVPNVQPPFGLVDPQFGSYAGNHDS 606
Query: 285 ISTEYTPST-RRESLFLERE-PQLESRYRLSGISIYGQDPALSTIRSSA---LGRASGP- 338
IS P+ + F+ R ++ + + + G+ + G +L I A +G GP
Sbjct: 607 ISPRIFPNVPQFHKDFIGRPLDEMSAPWTMKGMQVVGDPISLPDIPGMAHRGMGGFPGPG 666
Query: 339 ---IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGT 395
IV+ IT + +P + G G + IR SGA ITV + G + + I GT
Sbjct: 667 QPSIVSTITADVMVPKLVLPSLCGEDGGCLNRIREFSGAKITVADPMGNAMDTAILISGT 726
Query: 396 SSQVQLAQQLIQEYM 410
Q+ A+ LIQ ++
Sbjct: 727 PDQMHAARSLIQAFV 741
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGA-AFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A+ A + VF R+ + ASG S+RLLV +Q L+GK GS+IK + +S
Sbjct: 245 AVKAILLVFDRIFVNEMENGTGDASGERNHVSLRLLVLDSQVGWLLGKNGSVIKQMSTDS 304
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+RV S D+ P + + ++ GE V K L V
Sbjct: 305 CCEIRV-SKDKLPLCALPRDELCQITGELDSVRKGLNTV 342
>gi|357466759|ref|XP_003603664.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355492712|gb|AES73915.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 662
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 156/357 (43%), Gaps = 29/357 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
FR++ P VG++IG+ G +IK ++T + IKV++ S D I++ISG P+ +SP
Sbjct: 314 FRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPDDRISP 373
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+A RV R+S +D+K R++V S L+GK GS+I ++ SG
Sbjct: 374 VQEAIFRVQNRIS---RAMLDSKEHSML---ARVIVSSKHIGCLLGKGGSIIAEMRNLSG 427
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
A +R+L D+ P V+ED+ ++++ G V AL + LR + +
Sbjct: 428 AHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRDAFPSANFPSNS 487
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGIS--I 317
A + Q + + L + + ++ P L+ P + SGI I
Sbjct: 488 AFLDQHSPFPPYLGRRGL---SPPGMYSDLGPRHPHADFPLDDHPPFMNNMYRSGIPPLI 544
Query: 318 YGQDP------------------ALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIG 359
+ P A R S S PI+T T + +P + +I G
Sbjct: 545 SERKPWGPKGILEGGGHMGLPEFAGGPRRISGFAGGSQPIITSTTVEVVVPRALVAEIYG 604
Query: 360 VGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
G ++ I + S A + + + E + I GT Q AQ LIQ ++ + +ES
Sbjct: 605 ENGECLKQILQISDANVIITDPIPGAVETKIIISGTPEQTNAAQSLIQAFVMSERES 661
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
M A + VF+RV+ D S + +RLL+ S Q ++GK GS+IK + SGA
Sbjct: 141 MRAVMLVFERVA----EDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGA 196
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+R+L +E P ++ + +V++ G V +AL++V L
Sbjct: 197 QIRILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQL 237
>gi|357476219|ref|XP_003608395.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355509450|gb|AES90592.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 616
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 172/350 (49%), Gaps = 21/350 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP--VSSPDRIVLISGKEEPEAPV 137
FR++ ++G+++G+ G ++K +T A I V GP V DR++ I+ E PE+
Sbjct: 268 FRILCSGDRIGAVLGKGGSIVKALQNETGANISV--GPPVVECEDRLITITALENPESRF 325
Query: 138 SPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
SPA +A V VF R + E VD +++ + + +L+VPS Q L+GK G+++ +++
Sbjct: 326 SPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTAQLVVPSNQVGVLLGKGGAIVSEMRK 385
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK--FLVDQ---GVL 251
+ S+R+ E P + ++++V++ GE V AL LR FL+ Q G
Sbjct: 386 ATWTSIRITRNGEVPKCASFNDQVVQISGELPNVRDALYNATRRLRDHIFLIAQNSGGTG 445
Query: 252 PLFEKTYNASISQERQVETWADKS-SLHAATQSAISTEYTPSTRRESLFLEREPQL---- 306
P + + Q ++ S+H+ +QS + ++ R + P++
Sbjct: 446 PYRRPRDSIPLGLGGQSVVGSNHGPSIHSLSQSMDHLTLSRNSGRSASSGVWAPKVVGGK 505
Query: 307 ESRYRLSG---ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGT 363
SRY ++ D L++ ++ +G A+ I+T T + +P + G G+
Sbjct: 506 NSRYTDDAGRRLNPREGDLELASGSNTVIGNAA--IITNTTVEIMLPNDIIGSVYGENGS 563
Query: 364 SIENIRRTSGAIITVQESR-GLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
+++ +R+ SGA + E R G D + + GT + Q AQ L+Q Y+ N
Sbjct: 564 NLDQLRQISGAKVVFHEPRPGTSDRAKIVLSGTPDETQAAQSLLQAYILN 613
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
GH VFR++ ++G+ IG+ G +IK + T ARI++ D PV P+R++++ +
Sbjct: 18 GHVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGDG 77
Query: 136 PVS-PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
VS +A ++VF+R+ + + D G S RLLV + QA +IGK G ++ I
Sbjct: 78 DVSLNPQEALLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQAGGVIGKGGMVVAKI 137
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+ ++G +RVL+ D+ P + I+E+QG A+ V KAL AV G L+
Sbjct: 138 RADTGCRIRVLN-DKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQ 184
>gi|449516663|ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 643
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 156/337 (46%), Gaps = 13/337 (3%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ ++G +IG+ G +++ ++ A + V +R++ I+ E E+ S
Sbjct: 310 VFKILCANDRIGGVIGKGGTIVRALQNESGATVSVGPSVTGCDERLISITASENIESRYS 369
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA A V VF R + +S + RL+VPS Q ++GK G +I I++ +
Sbjct: 370 PAQKAVVLVFSRSVDVAIEKWQESSSKGSPVVARLVVPSNQVGCVLGKGGVIISEIRKVT 429
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G ++R++S+D+ P E + IV++ GE + V AL V G LR L ++P
Sbjct: 430 GTNIRIISSDQVPNCAAESDEIVQISGEFSNVQDALYNVTGRLRDNLF---LVPYGRVRD 486
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGIS-- 316
A + + V T H+ QS+ + SL P L LSGIS
Sbjct: 487 TAPLVRSTPVGTSHGSFMQHSTAQSSDDLGLS-----HSLDSPSSPGLWPPQSLSGISSR 541
Query: 317 -IYGQDPALSTIRSSA-LGRASG-PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
I L + RS LG + IVT T + +P + G GT++ +R+ SG
Sbjct: 542 AISDAGRGLPSHRSGVQLGSGNKTAIVTNTTVEIVVPDDVISLVYGENGTNLTRLRQISG 601
Query: 374 AIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
A + V E + ++ + I GT + Q AQ L+ ++
Sbjct: 602 AKVIVHEPDPITNDRLIVISGTPDETQAAQSLLHAFI 638
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 21/181 (11%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI------- 127
PGH FRM+ ++G +IG+ G +IK+ + T +I+V + P SPDR+V +
Sbjct: 55 PGHVAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEAPSESPDRVVTVIGSPALT 114
Query: 128 --------SGKEEPEAPVSPAMDAAVRVFKR---VSGLPENDVDAKASGAAFCSVRLLVP 176
SG E S A + ++VF+R V+ E G +C RLL
Sbjct: 115 SRVFLEQNSGASGEEVEASKAQEGLLKVFERILEVAAEIEGVEVGAEVGVVYC--RLLAD 172
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
Q ++IGK G +++ I++ SG +RVL+ D+ P + ++E++G+ + KAL A
Sbjct: 173 VAQVGSVIGKGGKVVEKIRKESGCRIRVLT-DKLPACAGPSDEMIEIEGDVWAIKKALLA 231
Query: 237 V 237
V
Sbjct: 232 V 232
>gi|242084058|ref|XP_002442454.1| hypothetical protein SORBIDRAFT_08g020260 [Sorghum bicolor]
gi|241943147|gb|EES16292.1| hypothetical protein SORBIDRAFT_08g020260 [Sorghum bicolor]
Length = 352
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 39 IGSENTE-HTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKG 97
+G +N E T +D + A VP++KKWPGWPG VFR++VP KVG++IGRKG
Sbjct: 67 VGGQNKEDQATPTDHGVEAGVKQQDATVPDDKKWPGWPGESVFRILVPTTKVGAVIGRKG 126
Query: 98 ELIKKTCEDTRARIKVLDGPVSSPDRIV 125
+ IKK CE++RARIKVL+GP + P+R+
Sbjct: 127 DFIKKMCEESRARIKVLEGPPAVPERVA 154
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 79/129 (61%), Gaps = 11/129 (8%)
Query: 314 GISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
GIS YG+D A ++ +A G +Q+T +MQ+P+SYA+ +IG G SI IRR SG
Sbjct: 211 GISSYGRD-APPSVPPGNQNQAHG--SSQVTHSMQVPLSYADAVIGSAGASISYIRRHSG 267
Query: 374 AIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYP 433
A I++QE G P E+TVEI G++SQVQ AQQLI+ + +DTGY SYP
Sbjct: 268 ATISIQE--GAPGEMTVEITGSASQVQTAQQLIK-----GPPAPAPPAQPVDTGYS-SYP 319
Query: 434 QLGNSSYPS 442
G +SY S
Sbjct: 320 PYGGASYGS 328
>gi|357501947|ref|XP_003621262.1| KH domain-containing protein [Medicago truncatula]
gi|355496277|gb|AES77480.1| KH domain-containing protein [Medicago truncatula]
Length = 571
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 98/176 (55%), Gaps = 13/176 (7%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-------SGKE 131
V+R + PV K+GSIIGR GE++K+ DT+A+I++ + +R+V + + E
Sbjct: 50 VYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESNDFE 109
Query: 132 EPEAPVSPAMDAAVRVFKRV-----SGLPENDVDA-KASGAAFCSVRLLVPSTQAINLIG 185
+ + PAMDA VR+ ++V G+ + DVD K G + +LLV S Q +IG
Sbjct: 110 DSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQIGCVIG 169
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
K G ++++I+ +GA +R+L D P + +V++ GE A V KAL V L
Sbjct: 170 KGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAARL 225
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+D+ A IKV D ++ IS +E E P S ++AAV + R S E D S
Sbjct: 323 QDSGANIKVDSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRCSEKVERD-----S 377
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G + RLLV S++ LIGK GS+I ++ + A++R+LS ++ P TED+ +V++
Sbjct: 378 GILSFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDEMVQIS 437
Query: 225 GEAAKVLKALEAVVGHLRKFLVDQ 248
GE AL V+ LR L D+
Sbjct: 438 GELDIAKDALLQVLTRLRANLFDK 461
>gi|255537898|ref|XP_002510014.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223550715|gb|EEF52201.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 679
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 152/340 (44%), Gaps = 37/340 (10%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVS-GLPENDVDAKA 163
++T IKVL+G S DRI+LISG P+ +S A DA +RV R++ LP + KA
Sbjct: 348 QETGCEIKVLEGVSDSEDRIILISGPAHPDDRISAAQDAVLRVQTRIARALPLPEGKEKA 407
Query: 164 SGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
RLLV S Q L+GK G+++ +++++GA +R+L D+ P +E+E +V++
Sbjct: 408 VIG-----RLLVSSNQIGCLLGKGGAIMAEMRKSTGAYIRILGKDQIPKCASENEEVVQI 462
Query: 224 QGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN-ASISQERQVETWADKSSLHAATQ 282
GE V +AL + LR + V P + N A + Q + + L
Sbjct: 463 NGEHEVVQEALLQITTRLRNHFF-RDVFPSIDHPSNPAFLDQAPPFPPYMGRRELSPPFH 521
Query: 283 SAISTEYTPSTRRESLFL---EREPQLESRYRLS----------------------GISI 317
+ S + F + P + + +R G+
Sbjct: 522 AFHSFDGMGGPPPPVGFHPHDDHSPFMHNIHRPGMPPHFERKPWGPQGLMEAGGPMGLPE 581
Query: 318 YGQDPALSTIRSSALGRASGP-IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAII 376
+G P R S G + P I+T T + +P S I G G ++ IR+ S A I
Sbjct: 582 FGGHPQR---RISGFGGVNHPAIITSTTVEVVVPRSVVPVIYGEDGACLKQIRQISDAKI 638
Query: 377 TVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
TV E + E + I GT Q AQ LIQ ++ + +ES
Sbjct: 639 TVTEPKPGAAETVIIISGTPEQTHAAQSLIQAFVMSERES 678
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 143 AAVRVFKR-VSGLPENDV-DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
A V VF+R + PE D + + + ++RLLV S+Q L+GK GS+IK + SGA
Sbjct: 151 ALVLVFERMLEAEPEMDEGNEEKKKPSMSTLRLLVLSSQVGCLLGKGGSVIKQMSAESGA 210
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+R+L D+ P + + +V++ GE + KAL++V L
Sbjct: 211 QIRILPRDKLPICASPTDELVQIAGEVDAIRKALQSVAQQL 251
>gi|414589867|tpg|DAA40438.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 640
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 104/193 (53%), Gaps = 11/193 (5%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFRMI+ VGSIIG+ G I+ +T A IK+L+ S +R+V I+ +E + S
Sbjct: 251 VFRMIILNEMVGSIIGKGGSTIRALQSETGACIKILEPVADSDERVVAITARENSDMLHS 310
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA DA VRV+ R+S E +D + A RLLVPS L+GK GS+I +++ +
Sbjct: 311 PAQDAVVRVYSRIS---EASIDRSSHTPA----RLLVPSQHIGCLLGKGGSIISEMRKIT 363
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ----GVLPLF 254
GA++R+ ++ P ++ +V++ G + AL + G +R ++ + G +P +
Sbjct: 364 GANIRIFGNEQIPRCAQRNDEMVQVTGSFQSIQDALLHITGRIRDVILPKPHPSGGMPPY 423
Query: 255 EKTYNASISQERQ 267
N + Q RQ
Sbjct: 424 PPVGNIPVHQSRQ 436
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 114 LDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSG--------LPENDVDAKASG 165
+D P + +++ISG + P A AVR ++ V G + + + + +G
Sbjct: 56 VDHPPVGDEAVLVISGPDTPAA--------AVRAWEHVVGHRVEGDEAMGGEEEEREVTG 107
Query: 166 AAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL-SADEAPFYVTEDERIVEMQ 224
A C R+L Q ++GK G ++ +++ GA +RV + ++ P + + ++ +
Sbjct: 108 AVGC--RMLAAGWQVGCVLGKGGKTVERMRQECGAQIRVFRNREQLPPWAPPGDELIHIS 165
Query: 225 GEAAKVLKALEAV 237
G ++V KAL AV
Sbjct: 166 GSFSQVRKALLAV 178
>gi|226529077|ref|NP_001146029.1| hypothetical protein [Zea mays]
gi|219885375|gb|ACL53062.1| unknown [Zea mays]
gi|414589866|tpg|DAA40437.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 624
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 104/193 (53%), Gaps = 11/193 (5%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFRMI+ VGSIIG+ G I+ +T A IK+L+ S +R+V I+ +E + S
Sbjct: 251 VFRMIILNEMVGSIIGKGGSTIRALQSETGACIKILEPVADSDERVVAITARENSDMLHS 310
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA DA VRV+ R+S E +D + A RLLVPS L+GK GS+I +++ +
Sbjct: 311 PAQDAVVRVYSRIS---EASIDRSSHTPA----RLLVPSQHIGCLLGKGGSIISEMRKIT 363
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ----GVLPLF 254
GA++R+ ++ P ++ +V++ G + AL + G +R ++ + G +P +
Sbjct: 364 GANIRIFGNEQIPRCAQRNDEMVQVTGSFQSIQDALLHITGRIRDVILPKPHPSGGMPPY 423
Query: 255 EKTYNASISQERQ 267
N + Q RQ
Sbjct: 424 PPVGNIPVHQSRQ 436
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 114 LDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSG--------LPENDVDAKASG 165
+D P + +++ISG + P A AVR ++ V G + + + + +G
Sbjct: 56 VDHPPVGDEAVLVISGPDTPAA--------AVRAWEHVVGHRVEGDEAMGGEEEEREVTG 107
Query: 166 AAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL-SADEAPFYVTEDERIVEMQ 224
A C R+L Q ++GK G ++ +++ GA +RV + ++ P + + ++ +
Sbjct: 108 AVGC--RMLAAGWQVGCVLGKGGKTVERMRQECGAQIRVFRNREQLPPWAPPGDELIHIS 165
Query: 225 GEAAKVLKALEAV 237
G ++V KAL AV
Sbjct: 166 GSFSQVRKALLAV 178
>gi|356531744|ref|XP_003534436.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 540
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 9/171 (5%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGK-------E 131
VFR + PV K+GS+IGR G+++K+ DT+A+I++ D +R+V I +
Sbjct: 45 VFRYLCPVRKIGSVIGRGGDIVKQLRADTKAKIRIGDALPGCDERVVTIHSSSEETNHFD 104
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
E + VSPA DA RV +RV + E+ + + + +LLVPS Q +IGK G ++
Sbjct: 105 ETDDLVSPAQDALFRVHQRV--IAEDAREDEDEERNHVTAKLLVPSDQIGCVIGKGGQIV 162
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
++I+ +GA +R+L D P + +V++ GEAA V KAL + +R
Sbjct: 163 QNIRSETGAQIRILKDDRLPPCALSTDELVQISGEAAVVKKALFQIAAQIR 213
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 10/179 (5%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R + P +G +IG+ G +I + +D+ A IKV D +++IS KE E SP
Sbjct: 282 RFVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIIISTKEFFEDSFSPT 341
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
++AAVR+ R S E D SG + RLLVP+++ LIGK G+++ ++ + A
Sbjct: 342 IEAAVRLQPRCSEKVERD-----SGIVSFTTRLLVPTSRIGCLIGKGGTIVTEMRRLTKA 396
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ-----GVLPLF 254
++R+LS D P +ED+ +V++ G+ AL + LR L D+ G LP+
Sbjct: 397 NIRILSKDNLPKIASEDDEMVQISGDLDVAKDALVQALTRLRANLFDKERAVSGFLPVL 455
>gi|148905782|gb|ABR16055.1| unknown [Picea sitchensis]
Length = 650
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 149/321 (46%), Gaps = 33/321 (10%)
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
IK DT A I+V D S +R++++S E + VSP ++A + + + SG + D
Sbjct: 338 IKSMRNDTGASIRVEDAQTESDERVIVVSATELADDRVSPTIEAVLLLQGKTSGTTDKD- 396
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDER 219
GA S R LVPS L+GK G++I +++ + A++R+ DE P V+E+E
Sbjct: 397 -----GA--ISTRFLVPSKHIGCLLGKGGNIISEMRKQTRANIRIFRKDERPICVSENEE 449
Query: 220 IVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHA 279
+V++ GE AL ++ LR+ +F+ AS ++ SSL
Sbjct: 450 LVQVTGEPGVAKDALIQILKRLRE--------NIFKDKDGAS-----NTDSVLPLSSLSV 496
Query: 280 ATQSAISTEYTPSTRRESLFLEREPQL-ESRYRLSGISI-------YGQDPALSTIRSSA 331
+ +S+ Y TR+ + R S LSG Y + R+
Sbjct: 497 PSAVPLSSSY--GTRKYDIVSPRGAIAGRSAAGLSGFGALQAGTGSYASLQPYAPTRTFG 554
Query: 332 LGRASGPIVTQI--TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
+G + G + + + + IP S ++G GG++I +IR SGA + +++ +
Sbjct: 555 IGLSGGHLNSSLAPSHEFAIPNSAVSSVLGRGGSNISHIREISGATVKLRDPITGASDRV 614
Query: 390 VEIKGTSSQVQLAQQLIQEYM 410
VEI GT Q AQ LIQ +M
Sbjct: 615 VEISGTPEQSHAAQSLIQAFM 635
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 21/193 (10%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVL 126
E+ PG V+R++ P +GS+IG+ G++IK ++TR++I+V D +R+++
Sbjct: 32 REQTMPGA-DSTVYRILCPSNVIGSVIGKGGKVIKSMRQETRSKIRVADAVPGVDERVIV 90
Query: 127 I-------------SGKEEPEAPVSPAMDAAVRVFKRV---SGLPENDVDAKASGAAFCS 170
I + PV PA D +RV + S +ND D K A
Sbjct: 91 IFSSPLSKDKEKDDDDDDNENEPVCPAQDGLLRVHSVIVQESSGKDNDADKKRPQDA--- 147
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
RLLV ++Q +LIGK G+ I+ ++ SGA +++ DE P + +V + G+AA V
Sbjct: 148 -RLLVANSQIGSLIGKGGNNIQKLRSESGAQIQIPRKDELPGCAFSFDELVVISGDAAAV 206
Query: 231 LKALEAVVGHLRK 243
KAL AV L K
Sbjct: 207 KKALYAVSAFLFK 219
>gi|356568682|ref|XP_003552539.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 543
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 9/171 (5%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGK-------E 131
VFR + PV K+GS+IGR G+++K+ DT+A+I++ D +R+V I +
Sbjct: 45 VFRYLCPVRKIGSVIGRGGDIVKQLRADTKAKIRIGDALPGCDERVVTIHSSSEETNHFD 104
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
E VSPA DA RV +RV + E+ + + + +LLVPS Q +IGK G ++
Sbjct: 105 ETGDLVSPAQDALFRVHQRV--IAEDAREDEDDERNHVTAKLLVPSDQIGCVIGKGGQIV 162
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
++I+ +GA +R+L D P ++ +V++ GEAA V KAL + +R
Sbjct: 163 QNIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALFQIAAQIR 213
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 10/179 (5%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R + P +G +IG+ G +I + +D+ A IKV D +++IS KE E SP
Sbjct: 282 RFVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIIISMKEFFEDSFSPT 341
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
++AAVR+ R S E D SG + RLLVP+++ LIGK G+++ ++ + A
Sbjct: 342 IEAAVRLQPRCSEKVERD-----SGIVSFTTRLLVPTSRIGCLIGKGGTIVTEMRRLTKA 396
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ-----GVLPLF 254
++R+LS + P +ED+ +V++ G+ AL + LR L D+ G LP+
Sbjct: 397 NIRILSKENLPKIASEDDEMVQISGDLDVAKDALVQALTRLRANLFDKERAVSGFLPVL 455
>gi|357159179|ref|XP_003578365.1| PREDICTED: poly(rC)-binding protein 2-like [Brachypodium
distachyon]
Length = 629
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFRMI VG IIG+ G I+ DT A +KV+D S +R+++IS +E E S
Sbjct: 254 VFRMICLNEMVGGIIGKGGATIRALQSDTGASVKVIDAVADSDERVIVISARENSEMMHS 313
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA DA +RV+ R+S E +D ++ A RLLVPS L+GK GS+I ++ +
Sbjct: 314 PAQDAVLRVYSRIS---EASMDKSSAVPA----RLLVPSQHIGCLLGKGGSIIAEMRNVT 366
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
GAS+R+ ++ P ++ +V++ G + AL + G +R ++
Sbjct: 367 GASIRIFGNEQIPRCAQRNDELVQVTGNFQSIQDALLHITGRIRDVII 414
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 24/156 (15%)
Query: 93 IGRKGELIKKTCEDTRA------RIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVR 146
I R ++ C +RA R ++ P + ++++SG P+AP AAVR
Sbjct: 33 IKRPSTTLRLLCPSSRAAALRPARDLHVEHPPVGDEVVLVVSG---PDAPA-----AAVR 84
Query: 147 VFKRVSG-------LPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
V++RV G E + + + +G C R+L Q ++GK G ++ +++ SG
Sbjct: 85 VWERVVGHRVGGDDAGEGEEEKEVTGVVGC--RMLAAGGQVGCVLGKGGKTVERMRQESG 142
Query: 200 ASVRVL-SADEAPFYVTEDERIVEMQGEAAKVLKAL 234
A +RV + D+ P + + ++ + G + KAL
Sbjct: 143 AQIRVFRNKDQVPPCALQGDELIHISGSFSAARKAL 178
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
T T + IP Y I G G+ + I++ SGA ITV + + + +V + G Q +
Sbjct: 553 TSTTTEVVIPCKYIGFICGTNGSDLAEIQKISGAAITVHDPKPGDTDASVFVCGDPEQTK 612
Query: 401 LAQQLIQEYM 410
AQ LI ++
Sbjct: 613 KAQSLIHAFI 622
>gi|326504604|dbj|BAK06593.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 531
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 12/194 (6%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFRMI VG +IG+ G I+ +T A +KV+D S +RI++IS +E E S
Sbjct: 158 VFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDPVADSDERIIVISARENSEMMRS 217
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
P+ DA +RV+ ++S E +D +S A RLLVP+ L+GK GS+I +++ +
Sbjct: 218 PSQDALLRVYSKIS---EASMDKSSSVPA----RLLVPAQHIGCLLGKGGSIIAEMRKLT 270
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV-----DQGVLPL 253
GAS+R+ ++ P ++ +V++ G + AL + G +R ++ G +P
Sbjct: 271 GASIRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDLIIPPKPHPSGGMPP 330
Query: 254 FEKTYNASISQERQ 267
+ N S Q RQ
Sbjct: 331 YPPVGNPSHHQSRQ 344
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 339 IVTQITQTMQ--IPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTS 396
+ T T T + IP Y + G G+ ++ I++ SGA ITV + + TV I G
Sbjct: 451 VATPATTTTEVVIPCKYIGFVCGTNGSDLDEIKKISGAAITVHDPKPGDTNSTVIICGDP 510
Query: 397 SQVQLAQQLIQEYM 410
Q + AQ LI ++
Sbjct: 511 EQTKKAQSLIHAFI 524
>gi|115453243|ref|NP_001050222.1| Os03g0376800 [Oryza sativa Japonica Group]
gi|18921324|gb|AAL82529.1|AC084766_15 putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|108708431|gb|ABF96226.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|108708432|gb|ABF96227.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|113548693|dbj|BAF12136.1| Os03g0376800 [Oryza sativa Japonica Group]
gi|125586438|gb|EAZ27102.1| hypothetical protein OsJ_11034 [Oryza sativa Japonica Group]
gi|215686826|dbj|BAG89676.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215695345|dbj|BAG90536.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704897|dbj|BAG94925.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 542
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 14/212 (6%)
Query: 40 GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
G N+ SD A G P + + P V+R + P K+GSIIGR GE+
Sbjct: 5 GHRNSHGKRHSDYA---ENGGGKRRNPGDDTYAPGPDDTVYRYLCPSRKIGSIIGRGGEI 61
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKE-----EPEAPVSPAMDAAVRVFKRVS 152
K+ DT+A+I++ + +R++ I S +E + E V PA DA RV +++S
Sbjct: 62 AKQMRADTQAKIRIGESVSGCDERVITIFSSSRETNTLVDAEDKVCPAQDALFRVHEKLS 121
Query: 153 GLPENDVDAKAS--GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEA 210
++D+ + S G A +VRLLVPS Q +IGK G +I+ I+ ++GA +RVLS +
Sbjct: 122 --IDDDIGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNENL 179
Query: 211 PFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
P + ++++ G++ V KAL V L
Sbjct: 180 PACAISGDELLQISGDSTVVRKALLQVSSRLH 211
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+++ A IKV D + D I+ +S KE E PVSP ++AAV + R S D +++
Sbjct: 307 QESGAFIKV-DSSNTEDDCIITVSAKEFFEDPVSPTINAAVHLQPRCS----EKTDPESA 361
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
++ + RLLV +++ LIGK GS+I I+ S A++R+LS + P EDE +V++
Sbjct: 362 IPSY-TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAAEDEEMVQIS 420
Query: 225 GEAAKVLKALEAVVGHLR-KFLVDQGVLPLF 254
G+ V AL + L+ F +G L F
Sbjct: 421 GDLDVVRHALLQITTRLKANFFEREGALSGF 451
>gi|125544080|gb|EAY90219.1| hypothetical protein OsI_11787 [Oryza sativa Indica Group]
Length = 542
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 14/212 (6%)
Query: 40 GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
G N+ SD A G P + + P V+R + P K+GSIIGR GE+
Sbjct: 5 GHRNSHGKRHSDYA---ENGGGKRRNPGDDTYAPGPDDTVYRYLCPSRKIGSIIGRGGEI 61
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKE-----EPEAPVSPAMDAAVRVFKRVS 152
K+ DT+A+I++ + +R++ I S +E + E V PA DA RV +++S
Sbjct: 62 AKQMRADTQAKIRIGESVSGCDERVITIFSSSRETNTLVDAEDKVCPAQDALFRVHEKLS 121
Query: 153 GLPENDVDAKAS--GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEA 210
++D+ + S G A +VRLLVPS Q +IGK G +I+ I+ ++GA +RVLS +
Sbjct: 122 --IDDDIGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNENL 179
Query: 211 PFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
P + ++++ G++ V KAL V L
Sbjct: 180 PACAISGDELLQISGDSTVVRKALLQVSSRLH 211
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+++ A IKV D + D I+ +S KE E PVSP ++AAV + R S D +++
Sbjct: 307 QESGAFIKV-DSSNTEDDCIITVSAKEFFEDPVSPTINAAVHLQPRCS----EKTDPESA 361
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
++ + RLLV +++ LIGK GS+I I+ S A++R+LS + P EDE +V++
Sbjct: 362 IPSY-TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAAEDEEMVQIS 420
Query: 225 GEAAKVLKALEAVVGHLR-KFLVDQGVLPLF 254
G+ V AL + L+ F +G L F
Sbjct: 421 GDLDVVRHALLQITTRLKANFFEREGALSGF 451
>gi|356530005|ref|XP_003533576.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 385
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 108/187 (57%), Gaps = 7/187 (3%)
Query: 63 AAVPEEKKWPGWPGH-CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP 121
A+ PE+ G +FR++VP ++G +IG++G I+K EDT+A IK+ D
Sbjct: 86 ASAPEQSAAKRAKGQDVIFRIVVPSRQIGKVIGKEGHRIQKIREDTKATIKIADAIARHE 145
Query: 122 DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAK---ASGAAFCSVRLLVPST 178
+R+++IS K+ E V+ A A ++ + ++ +DA A A ++RLL+ +
Sbjct: 146 ERVIIISSKDNDEK-VTDAEKALEQIAHLILKEDDSSLDASKVTAGHVAANTIRLLIAGS 204
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVT--EDERIVEMQGEAAKVLKALEA 236
QA LIG G I+ ++++SGAS+ VL+ ++ P + E +R+V++ G+ V+KALE
Sbjct: 205 QAGGLIGMSGQNIEKLRDSSGASITVLAPNQLPLCASAHESDRVVQLSGDVPAVMKALEE 264
Query: 237 VVGHLRK 243
+ LR+
Sbjct: 265 IGCQLRE 271
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 340 VTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQV 399
V +T M I + +IG G++I IR SGA+I V +G ++ G++ QV
Sbjct: 301 VDYVTFEMLISETMVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRQIQFGGSAQQV 360
Query: 400 QLAQQLIQEYM 410
LA+Q + EY+
Sbjct: 361 ALAKQRVDEYI 371
>gi|53749469|gb|AAU90323.1| KH domain containing protein [Solanum demissum]
Length = 533
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++ P VG++IG+ G +IK+ +++ A IKV D I+ +S KE E SP
Sbjct: 275 RLVCPTENVGAVIGKGGGIIKQLRQESGASIKVDSAAAEGDDCIIFVSAKEAFEDQ-SPT 333
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+DA +R+ R S E K SG A + RLLVPS++ LIGK GS+I ++ ++ A
Sbjct: 334 IDATMRLQPRSSEKTE-----KESGDAILTTRLLVPSSRVGCLIGKGGSIINEMRNSTRA 388
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD-QGVLPLF 254
S+RVLS + P +ED+ +V++ G+A AL V+ LR + +G P F
Sbjct: 389 SIRVLSKENLPKVASEDDEMVQITGDANVATNALLQVLMRLRANTFEMEGSFPAF 443
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 10/176 (5%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-SGKEEP 133
P VFR + P K+GSIIG G++ K+ +T ++I++ + +R+V I SG EE
Sbjct: 40 PEDTVFRYLCPTGKIGSIIGVGGDIAKQLRTETNSKIRISETIPGCEERVVTIYSGSEET 99
Query: 134 EAP------VSPAMDAAVRVFKRVSGLPEN-DVDAKASGAAFCSVRLLVPSTQAINLIGK 186
+SPA DA RV RV L E+ +D +VR+LVPS Q +IGK
Sbjct: 100 NVSEDTGDLISPAQDALFRVHDRV--LAEDLRMDEDLEDHQQITVRMLVPSDQIGCVIGK 157
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
G +I++++ +GA +RVLS++ P + ++++ GE A V KAL V L
Sbjct: 158 GGQVIQNLRSETGAQIRVLSSEHLPPCALNSDELLQITGEGAVVKKALYQVAARLH 213
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 51/186 (27%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP-----DRIVLISGKEEPEA 135
RM+VP ++G +IG+ G++I+ +T A+I+VL P D ++ I+G+ A
Sbjct: 143 RMLVPSDQIGCVIGKGGQVIQNLRSETGAQIRVLSSEHLPPCALNSDELLQITGEG---A 199
Query: 136 PVSPAM-DAAVR-----------------VFKRVSGLP---------------------E 156
V A+ A R +F+ +G +
Sbjct: 200 VVKKALYQVAARLHDNPSRSQHQLLSSPSIFRSGAGFVNPHAGTQVMGVTSLMGPYASYK 259
Query: 157 NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA----DEAPF 212
+D +K+S +VRL+ P+ +IGK G +IK +++ SGAS++V SA D+
Sbjct: 260 SDGRSKSSSVKEFAVRLVCPTENVGAVIGKGGGIIKQLRQESGASIKVDSAAAEGDDCII 319
Query: 213 YVTEDE 218
+V+ E
Sbjct: 320 FVSAKE 325
>gi|356557593|ref|XP_003547100.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 710
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 97/167 (58%), Gaps = 1/167 (0%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
FR++ +VG +IG+ G +++ +T A I + DR++ I+ E PE+ SP
Sbjct: 321 FRILCSNDRVGGVIGKGGNIVRALQSETGATISIGPAVAECEDRLITIAASENPESRYSP 380
Query: 140 AMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A AAV VF R + E +D+ + + +VRL+VPS+Q LIGK G ++ +++ +
Sbjct: 381 AQKAAVLVFSRSIEVGFEKGLDSGLNKGSIVTVRLVVPSSQVGCLIGKGGVIVSEMRKAT 440
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
GA++R++ D+ P ++++++V++ GE + V AL +G LR L
Sbjct: 441 GANIRIIGTDQVPKCASDNDQVVQISGEFSSVQDALYNAMGRLRDNL 487
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 21/228 (9%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI------SG 129
GH FR++ ++G +IG+ G +IK + T A+I++ D P PDRI+L+ SG
Sbjct: 43 GHVAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQELPDRIILVIADAALSG 102
Query: 130 K----EEPEAPVSPAMDAAVRVFKRV--SGLPENDVDAKASGAAFCSVRLLVPSTQAINL 183
K E VS A +A ++VF R+ SG + VD G S RL+ + QA ++
Sbjct: 103 KILLRNEEVIEVSKAQEALLKVFDRILRSGGGDRSVDV---GDRVMSCRLVADAAQAGSV 159
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
IGK G +++ I++ +G +RVL+ D+ P + + I+E++G + V KAL AV L+
Sbjct: 160 IGKGGKVVERIKKETGCKIRVLT-DDLPLCASASDEIIEIEGRVSSVKKALVAVSQRLQD 218
Query: 244 FL-VDQ----GVLPLFEKTYNASISQERQVETWADKSSLHAATQSAIS 286
VD+ G P Y A + R T A + +L AA + ++
Sbjct: 219 CHPVDRTKMMGSKPYEIVQYEALDALPRATSTAAPRVTLTAAPRGTLT 266
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 339 IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR-GLPDEITVEIKGTSS 397
IVT + +P + + G G+++ +R+ SGA + V E R G D I V I GT
Sbjct: 635 IVTNTIVEIVVPDDTIDCVYGENGSNLARLRQISGANVVVHEPRPGTSDRIIV-ISGTPD 693
Query: 398 QVQLAQQLIQEYM 410
+ Q AQ L+Q ++
Sbjct: 694 ETQAAQSLLQAFI 706
>gi|326513114|dbj|BAK06797.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 12/194 (6%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFRMI VG +IG+ G I+ +T A +KV+D S +RI++IS +E E S
Sbjct: 253 VFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDPVADSDERIIVISARENSEMMRS 312
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
P+ DA +RV+ ++S E +D +S A RLLVP+ L+GK GS+I +++ +
Sbjct: 313 PSQDALLRVYSKIS---EASMDKSSSVPA----RLLVPAQHIGCLLGKGGSIIAEMRKLT 365
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV-----DQGVLPL 253
GAS+R+ ++ P ++ +V++ G + AL + G +R ++ G +P
Sbjct: 366 GASIRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDLIIPPKPHPSGGMPP 425
Query: 254 FEKTYNASISQERQ 267
+ N S Q RQ
Sbjct: 426 YPPVGNPSHHQSRQ 439
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T + IP Y + G G+ ++ I++ SGA ITV + + TV I G Q + AQ
Sbjct: 554 TTEVVIPCKYIGFVCGTNGSDLDEIKKISGAAITVHDPKPGDTNSTVIICGDPEQTKKAQ 613
Query: 404 QLIQEYM 410
LI ++
Sbjct: 614 SLIHAFI 620
>gi|302814684|ref|XP_002989025.1| hypothetical protein SELMODRAFT_447544 [Selaginella moellendorffii]
gi|300143126|gb|EFJ09819.1| hypothetical protein SELMODRAFT_447544 [Selaginella moellendorffii]
Length = 1034
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 152/321 (47%), Gaps = 26/321 (8%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
K+G +IG+KG IKK ++T A IK+ D ++ DR VLIS K E + S A A + V
Sbjct: 512 KIGKVIGKKGSQIKKLRDETGAHIKIADPMNTTEDRAVLISSKNEGVSDRSCAELALLEV 571
Query: 148 FKRV-----SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASV 202
+ P + + G+ + RLL+ +QA +LIGK G+ IK+I+ +S ASV
Sbjct: 572 VTILLKDGDGATPSAAIGPQHQGSPNLT-RLLIAGSQAGSLIGKAGANIKNIRGSSSASV 630
Query: 203 RVLSADEAPFY--VTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGV--LPLFEKTY 258
RVL +D+ P E +R+V++ GE A V A+E V +LR + V P + Y
Sbjct: 631 RVLPSDQLPLCSAACETDRLVQISGEVAAVQMAIELVAANLRDNPPKETVPTNPEAKTAY 690
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLF-LEREPQLESRYRLSGISI 317
I + SS+ A Y S +L+ L+ P Y +
Sbjct: 691 FLGIDGNTGQQVLLPHSSVAAV--------YGHSPSSMALYGLQPHPLAGPAY---AGGV 739
Query: 318 YGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIIT 377
Q P L ++ L P++ +++ M +P S +IG GG I ++R SGA I
Sbjct: 740 LAQAPPLYANPAARL----PPMLPKVSAEMSVPSSVMGGLIGKGGFHISHMRSVSGATIK 795
Query: 378 VQESRGLPDEITVEIKGTSSQ 398
V S+ E T+ +GT Q
Sbjct: 796 VNGSKESSVERTILFEGTQEQ 816
>gi|113205451|gb|AAW28569.2| KH domain containing protein, putative [Solanum demissum]
Length = 600
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++ P VG++IG+ G +IK+ +++ A IKV D I+ +S KE E SP
Sbjct: 275 RLVCPTENVGAVIGKGGGIIKQLRQESGASIKVDSAAAEGDDCIIFVSAKEAFEDQ-SPT 333
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+DA +R+ R S E K SG A + RLLVPS++ LIGK GS+I ++ ++ A
Sbjct: 334 IDATMRLQPRSSEKTE-----KESGDAILTTRLLVPSSRVGCLIGKGGSIINEMRNSTRA 388
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD-QGVLPLF 254
S+RVLS + P +ED+ +V++ G+A AL V+ LR + +G P F
Sbjct: 389 SIRVLSKENLPKVASEDDEMVQITGDANVAANALLQVLMRLRANTFEMEGSFPAF 443
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 10/176 (5%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-SGKEEP 133
P VFR + P K+GSIIG G++ K+ +T ++I++ + +R+V I SG EE
Sbjct: 40 PEDTVFRYLCPTGKIGSIIGVGGDIAKQLRTETNSKIRISETIPGCEERVVTIYSGSEET 99
Query: 134 EAP------VSPAMDAAVRVFKRVSGLPEN-DVDAKASGAAFCSVRLLVPSTQAINLIGK 186
+SPA DA RV RV L E+ +D +VR+LVPS Q +IGK
Sbjct: 100 NVSEDTGDLISPAQDALFRVHDRV--LAEDLRMDEDLEDHQQITVRMLVPSDQIGCVIGK 157
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
G +I++++ +GA +RVLS++ P + ++++ GE A V KAL V L
Sbjct: 158 GGQVIQNLRSETGAQIRVLSSEHLPPCALNSDELLQITGEGAVVKKALYQVAARLH 213
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 51/186 (27%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP-----DRIVLISGKEEPEA 135
RM+VP ++G +IG+ G++I+ +T A+I+VL P D ++ I+G+ A
Sbjct: 143 RMLVPSDQIGCVIGKGGQVIQNLRSETGAQIRVLSSEHLPPCALNSDELLQITGEG---A 199
Query: 136 PVSPAM-DAAVR-----------------VFKRVSGLP---------------------E 156
V A+ A R +F+ +GL +
Sbjct: 200 VVKKALYQVAARLHDNPSRSQHQLLSSPSIFRSGAGLVNPHAGTQVMGVTSLMGPYASYK 259
Query: 157 NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA----DEAPF 212
+D +++S +VRL+ P+ +IGK G +IK +++ SGAS++V SA D+
Sbjct: 260 SDGRSRSSSVKEFAVRLVCPTENVGAVIGKGGGIIKQLRQESGASIKVDSAAAEGDDCII 319
Query: 213 YVTEDE 218
+V+ E
Sbjct: 320 FVSAKE 325
>gi|297610937|ref|NP_001065407.2| Os10g0564000 [Oryza sativa Japonica Group]
gi|255679638|dbj|BAF27244.2| Os10g0564000 [Oryza sativa Japonica Group]
Length = 100
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 57/67 (85%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
TQITQTMQIP++YAEDIIGV G +I IR SGA++T+QES G PD+ITVE+KGTSSQVQ
Sbjct: 25 TQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEMKGTSSQVQ 84
Query: 401 LAQQLIQ 407
A QLIQ
Sbjct: 85 AAYQLIQ 91
>gi|145347410|ref|XP_001418160.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578389|gb|ABO96453.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 651
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 155/343 (45%), Gaps = 48/343 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
FR++ PV K GS+IGR GE+I++ T A++KV + + +RI+ +S ++ AP+
Sbjct: 315 FRLLCPVSKTGSVIGRNGEVIQQIRSQTGAKVKVCEQVNGAEERIICVSSSDDGLAPMLA 374
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A A RV++ + N++ RLLV ++Q LIGK GS+IK I+ +G
Sbjct: 375 AQVALFRVYRCIVESAGNEIP--------LPFRLLVQTSQIGCLIGKGGSIIKQIRNETG 426
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
A+VRVL ++ P +DE + Q A + V G LR + + L T +
Sbjct: 427 ATVRVLPSEALPSCANDDELLEIGQWPADACALGIRIVSGRLRGNIRHKAAERL-TSTAD 485
Query: 260 ASISQERQVE-TWADKSSL-HAATQSAI-STEYTPSTRRESLFLEREPQLESRYRLSGIS 316
A +Q + TW + + TQ+A S E ++ +S R P +E
Sbjct: 486 AQNTQTMGFDATWQQAELIPYGMTQTAYGSPETVMMSKTKSTGGARAPPVEI-------- 537
Query: 317 IYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAII 376
P +S + S M I + ++G GG +I R+ SGA I
Sbjct: 538 ----APGVSVVNSV---------------QMAISSQHIGSVLGRGGCNISLARQVSGARI 578
Query: 377 TV---------QESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ R + + +EI G+S QV AQ +IQ ++
Sbjct: 579 KLYPGAAGSRRTADRSVDSDRLLEISGSSEQVASAQDIIQRFI 621
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 145/335 (43%), Gaps = 78/335 (23%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE-----EPE 134
+R++ P ++G +IG++G +IK T +T AR+KV + +R++L++ + E
Sbjct: 60 YRLLCPTTRIGRVIGKEGRVIKATRAETGARVKVAPTTRGADERVILVASGDDLTVGEDG 119
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDA---------------KASGAAFCSVRLLVPSTQ 179
++ A A R+F ++G E V A GA+ RLLVP Q
Sbjct: 120 EGMTTAEVALFRIFDTITG--EEGVTAARGGEGEGEGEASGGSTRGASTPICRLLVPRVQ 177
Query: 180 AINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG-------------- 225
+LIGK G++I +I+ +SGA+VRV+ A+ P ++ + ++++
Sbjct: 178 VGSLIGKGGTVISAIRASSGATVRVMPANMLPACASQGDELLQITAPSRDADGAERDQKL 237
Query: 226 EAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAI 285
A V AL + HLR++ + NA+ T +++S A I
Sbjct: 238 SMASVKNALRMIAKHLREY-----------PSKNAA--------TESNRSPFEAFM---I 275
Query: 286 STEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQ 345
+ P ES + + +R L+G+ + G T+IT
Sbjct: 276 GNKTAPHAGVESPGAKNGGHMSTRMNLNGVYVPGG--------------------TEITF 315
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQE 380
+ P+S +IG G I+ IR +GA + V E
Sbjct: 316 RLLCPVSKTGSVIGRNGEVIQQIRSQTGAKVKVCE 350
>gi|449438568|ref|XP_004137060.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 658
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 160/358 (44%), Gaps = 35/358 (9%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ ++G +IG+ G +++ ++ A + V +R++ I+ E E+ S
Sbjct: 305 VFKILCANDRIGGVIGKGGTIVRALQNESGATVSVGPSVTGCDERLISITASENIESRYS 364
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA A V VF R + +S + RL+VPS Q ++GK G +I I++ +
Sbjct: 365 PAQKAVVLVFSRSVDVAIEKWQESSSKGSPVVARLVVPSNQVGCVLGKGGVIISEIRKVT 424
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV----------DQ 248
G ++R++S+D+ P E + IV++ GE + V AL V G LR L +
Sbjct: 425 GTNIRIISSDQVPNCAAESDEIVQISGEFSNVQDALYNVTGRLRDNLFSSVLSNSGTRNG 484
Query: 249 GVLPLFEKTY-------NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE 301
G ++ +T A + + V T H+ QS+ + SL
Sbjct: 485 GGTSVYPETSPYGRVRDTAPLVRSTPVGTSHGSFMQHSTAQSSDDLGLS-----HSLDSP 539
Query: 302 REPQLESRYRLSGIS---IYGQDPALSTIRSSA-LGRASG-PIVTQITQTMQIPISYAED 356
P L LSGIS I L + RS LG + IVT T + +P
Sbjct: 540 SSPGLWPPQSLSGISSRAISDAGRGLPSHRSGVQLGSGNKTAIVTNTTVEIVVPDDVISL 599
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEIT----VEIKGTSSQVQLAQQLIQEYM 410
+ G GT++ +R+ SGA + V E PD IT + I GT + Q AQ L+ ++
Sbjct: 600 VYGENGTNLTRLRQISGAKVIVHE----PDPITSDRLIVISGTPDETQAAQSLLHAFI 653
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 117/464 (25%), Positives = 188/464 (40%), Gaps = 103/464 (22%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI------- 127
PGH FRM+ ++G +IG+ G +IK+ + T +I+V + P SPDR+V +
Sbjct: 50 PGHVAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEAPSESPDRVVTVIGSPALT 109
Query: 128 --------SGKEEPEAPVSPAMDAAVRVFKR---VSGLPENDVDAKASGAAFCSVRLLVP 176
SG E S A + ++VF+R V+ E G +C RLL
Sbjct: 110 SRVFLEQNSGASGEEVEASKAQEGLLKVFERILEVAAEIEGVEVGAEVGVVYC--RLLAD 167
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL-- 234
Q ++IGK G +++ I++ SG +RVL+ D+ P + ++E++G+ + KAL
Sbjct: 168 VAQVGSVIGKGGKVVEKIRKESGCRIRVLT-DKLPACAGPSDEMIEIEGDVWAIKKALLA 226
Query: 235 -------------------EAVVG------HLRKFLVDQGVLPLFEKTYNASISQERQVE 269
EAV+ H+ L VLP+ + N S +
Sbjct: 227 VSRRLQDCPPSEKRTVRPAEAVIHETLPDLHMDHILQRNSVLPILPSSSNIFASGIHSLS 286
Query: 270 TWADK---SSLHAATQSAISTEYTPSTRRESLF-----LEREPQLESRYRLS-GISIYGQ 320
AD + A Q + + R + + R Q ES +S G S+ G
Sbjct: 287 IDADMLPPVDTNVAQQDVVFKILCANDRIGGVIGKGGTIVRALQNESGATVSVGPSVTGC 346
Query: 321 DPALSTIRSSA-----LGRASGPIVTQITQTMQIPISYAED------------------- 356
D L +I +S A +V ++++ + I ++
Sbjct: 347 DERLISITASENIESRYSPAQKAVVLVFSRSVDVAIEKWQESSSKGSPVVARLVVPSNQV 406
Query: 357 --IIGVGGTSIENIRRTSGAIITVQESRGLP------DEITVEIKGTSSQVQLA-QQLIQ 407
++G GG I IR+ +G I + S +P DEI V+I G S VQ A +
Sbjct: 407 GCVLGKGGVIISEIRKVTGTNIRIISSDQVPNCAAESDEI-VQISGEFSNVQDALYNVTG 465
Query: 408 EYMNNHKESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPYG 451
+N S+ S+ G + G G S YP +S PYG
Sbjct: 466 RLRDNLFSSVLSNSGTRNGG--------GTSVYPETS----PYG 497
>gi|302803885|ref|XP_002983695.1| hypothetical protein SELMODRAFT_445667 [Selaginella moellendorffii]
gi|300148532|gb|EFJ15191.1| hypothetical protein SELMODRAFT_445667 [Selaginella moellendorffii]
Length = 1020
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 153/322 (47%), Gaps = 26/322 (8%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
K+G +IG+KG IKK ++T A IK+ D ++ DR VLIS K E + + A A + V
Sbjct: 513 KIGKVIGKKGSQIKKLRDETGAHIKIADPMNTTEDRAVLISSKNEGGSDRTCAELALLEV 572
Query: 148 FKRV-----SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASV 202
+ P + + G+ + RLL+ +QA +LIGK G+ IK+I+ +S ASV
Sbjct: 573 VTILLKDGDGATPSAAIGPQHQGSPNLT-RLLIAGSQAGSLIGKAGANIKNIRGSSSASV 631
Query: 203 RVLSADEAPFY--VTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGV--LPLFEKTY 258
RVL +D+ P E +R+V++ GE A V A+E V +LR + V P + Y
Sbjct: 632 RVLPSDQLPLCSAACETDRLVQISGEVAAVQMAIELVAANLRDNPPKETVPTTPEAKTAY 691
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLF-LEREPQLESRYRLSGISI 317
I + + SS+ A Y S +L+ L+ P Y +
Sbjct: 692 FLGIDGKTGQQVLLPHSSVAAV--------YGHSPSSMALYGLQPHPLAGPAY---AGGV 740
Query: 318 YGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIIT 377
Q P L ++ L P++ +++ M +P S +IG GG I ++R SGA I
Sbjct: 741 LAQAPPLYANPAARL----PPMLPKVSAEMSVPSSVMGGLIGKGGFHISHMRSVSGATIK 796
Query: 378 VQESRGLPDEITVEIKGTSSQV 399
V S+ E T+ +GT Q
Sbjct: 797 VNGSKESSVERTILFEGTQEQC 818
>gi|225452863|ref|XP_002283766.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|296082939|emb|CBI22240.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 97/174 (55%), Gaps = 9/174 (5%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI------- 127
P V+R + P K+GSIIGR GE++K+ DT+++I++ + +R+V I
Sbjct: 40 PEDTVYRYLCPGRKIGSIIGRGGEIVKQLRVDTKSKIRIGETVPGCEERVVTIYSSSDET 99
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQ 187
+ ++ + VSPA DA RV RV + D++ A+ +VRLLVPS Q +IGK
Sbjct: 100 NAFDDSDTFVSPAQDALFRVHDRVVSEEVHGEDSEE--ASQVTVRLLVPSDQIGCVIGKG 157
Query: 188 GSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
G +I+SI+ SGA VR+L D P + +V++ GE + V KAL + L
Sbjct: 158 GQIIQSIRSESGAQVRILKDDHLPSCALSSDELVQISGEPSLVRKALYQIASRL 211
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 6/134 (4%)
Query: 122 DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAI 181
D ++ IS KE E SP ++AAVR+ R S E D SG + RLLVP+++
Sbjct: 327 DCLIAISAKEFFEDTFSPTIEAAVRLQPRCSEKVERD-----SGIVSFTTRLLVPTSRIG 381
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
LIGK G++I +++ + A++R+LS + P +ED+ +V++ G+ AL V L
Sbjct: 382 CLIGKGGAIITEMRKLTKANIRILSKENLPKVASEDDEMVQIAGDLDVAKDALIQVTTRL 441
Query: 242 RKFLVD-QGVLPLF 254
R L D +G + F
Sbjct: 442 RANLFDREGAVSAF 455
>gi|225443339|ref|XP_002264125.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|297735779|emb|CBI18466.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 177/401 (44%), Gaps = 61/401 (15%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P++ G + V EE+ VF+++ KVGS+IG+ G +I+ +T A IK+
Sbjct: 313 PENIGANHRMVLEEE--------VVFKLLCHFEKVGSLIGKGGSIIRFLQSETGASIKIA 364
Query: 115 DGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
D S +R+V+IS +E E SPA DA +RV R++ + GAA + RLL
Sbjct: 365 DAAPDSDERVVVISARENLEQKHSPAQDAVIRVHCRIAEI------GFEPGAAVVA-RLL 417
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
V S Q L+GK G +I ++ +GAS+R+ + ++ P ++++ +V++ G V AL
Sbjct: 418 VHSQQIGCLLGKGGIIISEMRRATGASIRIFAKEQVPKCGSQNDELVQVIGSLQSVQDAL 477
Query: 235 EAVVGHLRK--FLVDQGVL----------------PLFEKTYN----ASISQERQVETWA 272
+ +R+ F + + P+F ++ S V
Sbjct: 478 FRITSRIRETIFPLKPSISNVNGPPYMSSFPEIPPPMFRPRHDPASPGHYSSPVGVPHGI 537
Query: 273 DKSSL------HAATQSAISTEYTPSTRRESLF------------LEREPQLESRYRLSG 314
D+S++ H ++ S PS + + +R P R G
Sbjct: 538 DRSAVPGHPLDHQSSFSHGVDRIGPSNLDRAPYPYGGDRPGHGPPFDR-PSSSPRMWTQG 596
Query: 315 IS--IYGQDPALSTIRSSALGRASGPIVTQITQT---MQIPISYAEDIIGVGGTSIENIR 369
+S + G D ++ S SG IT T + +P + + G +++ IR
Sbjct: 597 VSGNLRGTDVGSGSLASRNGPPGSGSQAPNITTTTVEVAVPQALLSHVYGENNSNLNQIR 656
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA + +Q+ R E V + GT Q + AQ L+Q ++
Sbjct: 657 QISGARVVIQDPRTGSSEGVVVVSGTPDQTRAAQSLVQAFI 697
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 36/195 (18%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-----SGKEEP 133
+FR++ P K G +IG+ G +I++ EDT A+I++ D + +R++LI K E
Sbjct: 57 LFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRIDDSVLGCDERVILIVADAVKSKREA 116
Query: 134 EA---------------------PV-------SPAMDAAVRVFKRVSGLPENDVDAKAS- 164
A PV SPA A VRVF+R+ + E + +
Sbjct: 117 SAICGAEANDGEESANLSNSSPNPVAVDDDESSPAQQALVRVFERILKVDEEREEKEKKE 176
Query: 165 --GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
G RLL PS Q ++G+ G +++ I++ SGA +RVL D P + + +++
Sbjct: 177 DLGNVAVCCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACASPGDELIQ 236
Query: 223 MQGEAAKVLKALEAV 237
+ G V KAL V
Sbjct: 237 ITGTFPAVRKALLLV 251
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 7/79 (8%)
Query: 163 ASGAAFCSV--RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERI 220
A+GAA V R+L P+T+ +IGK G++I+ +E++GA +R+ D++ + DER+
Sbjct: 48 AAGAAKPQVLFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRI---DDS--VLGCDERV 102
Query: 221 VEMQGEAAKVLKALEAVVG 239
+ + +A K + A+ G
Sbjct: 103 ILIVADAVKSKREASAICG 121
>gi|410900550|ref|XP_003963759.1| PREDICTED: poly(rC)-binding protein 3-like [Takifugu rubripes]
Length = 434
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 169/371 (45%), Gaps = 63/371 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G SSP+RIV I+G
Sbjct: 19 LRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SSPERIVTITG---------- 66
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A +A R F ++ E D+ A S ++ S +RL+ P +Q +LIGK GS IK I
Sbjct: 67 ATEAIFRAFAMIAQKFEEDISAAMSNSSVTSKPPVTLRLVFPGSQCGSLIGKGGSKIKEI 126
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ----GV 250
+E +GA V+V + D P ER V + G +A+ V H+ +++
Sbjct: 127 RETTGAQVQV-AGDMLP---DSTERAVTISGTP----QAITQCVRHICSVMLESPPKGAT 178
Query: 251 LPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPS----TRRESLFLEREPQL 306
+P K + A + S HA AI +YT + T+ L ++ P L
Sbjct: 179 IPYRPKAVTVGVH-----AVLAPQQSAHAF---AIPGQYTFAHQDLTKLHQLAMQHIP-L 229
Query: 307 ESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIE 366
S + S + G DP+ T +Q M IP + IIG G+ I
Sbjct: 230 PSLGQ-SNPTFPGLDPSAPT----------------SSQEMAIPNDFIGCIIGRQGSKIN 272
Query: 367 NIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYG---- 422
IR+ SGA I + + V I G+ + + +AQ LI + K ++ ++
Sbjct: 273 EIRQVSGAHIKIASTTDGSAVRQVTITGSPASINVAQYLINASLEMAKYTMQAASSATPV 332
Query: 423 QIDTGYRPSYP 433
++ G+ S P
Sbjct: 333 DLNLGFSQSAP 343
>gi|297794027|ref|XP_002864898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310733|gb|EFH41157.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 865
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/406 (23%), Positives = 178/406 (43%), Gaps = 65/406 (16%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ G +IG G++++ +T A I V + +R++ ++ E PE S
Sbjct: 461 VFKILCSTENAGGVIGSGGKVVRMLHSETGAFINVGNTLADCEERLIAVTAPENPECQSS 520
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA A + +F R+ L + + + RL+VP++Q ++GK G ++ +++ +
Sbjct: 521 PAQKAIMLLFSRLFELSTKKILDNGPRTSI-TARLVVPTSQIGCVLGKGGVIVSEMRKTT 579
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
GA++++L ++ P V+E+++++++ GE V +A+ + LR + + K+
Sbjct: 580 GATIQILKVEQNPKCVSENDQVIQITGEFPNVREAIFHITSRLRDSVFSNSMKNSITKSS 639
Query: 259 NASISQERQVETWADK-----------------SSLHAATQSAI------STEYT----- 290
+A ++ ER +D SSLH ++ + S Y+
Sbjct: 640 SA-LTTERIYHRQSDNPLSIGSHQSVSNPPTNSSSLHRRSEDSFLSGSHSSVNYSRPVGT 698
Query: 291 -PSTRRESLFLER-------EPQLESRYRL--SGISIY------------------GQDP 322
P R E F +R P R+ + S IS + G
Sbjct: 699 DPYVRPEDPFPDRFNPSAGYSPNFGRRFTMDHSDISHHLTEVPSRLWASPPPAAPRGLSD 758
Query: 323 ALSTIRSSALGRASG-----PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIIT 377
A + S+ G A G IVT T +++P + + G G ++E +R+ SGA +
Sbjct: 759 ASGGLSSARAGHALGSGHKSAIVTNTTVEIRVPENAMSFVYGEQGYNLEQLRQISGARVI 818
Query: 378 VQE-SRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYG 422
V E G D I V I GT Q Q AQ L+ ++ + S++ Y
Sbjct: 819 VHEPPLGTSDRIIV-ISGTPDQTQAAQNLLHAFILTGETSLSKKYN 863
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 114/226 (50%), Gaps = 39/226 (17%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
GH FR++ P+ VG++IG+ G +IK+ + T A+I+V + P SPDR++ I + + ++
Sbjct: 43 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPFGSPDRVITIIAQADSKS 102
Query: 136 PV---------------------SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
V S A A ++VF+ ++ ++D C RLL
Sbjct: 103 RVKLGVNNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSD-------TVVC--RLL 153
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S+ A +IGK G ++ SI++ +G + + + + P D+ +VE++G A V KAL
Sbjct: 154 TESSHAGAVIGKGGQMVGSIRKETGCKISIRT-ENLPICADTDDEMVEIEGNAIAVKKAL 212
Query: 235 EAVVGHLRKFL-VDQ----GVLPLFEKTYNASISQERQVETWADKS 275
++ L+ +D+ G PL EK + AS+ R +ET +S
Sbjct: 213 VSISRCLQNCQSIDKVRMVGNRPL-EKEFQASL--HRPIETIIQES 255
>gi|168013158|ref|XP_001759268.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689581|gb|EDQ75952.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 427
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 6/164 (3%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFR++ P K+GS+IG+ G +I +DT ARIK+ + S +R++++S E P S
Sbjct: 261 VFRLLCPSDKIGSVIGKGGSIIHNLRKDTGARIKIANAVPGSDERVIIVSALELPGDSFS 320
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA++A ++V R++ D D + RLLVP+ Q L+GK GS+I+ ++ +
Sbjct: 321 PALEAMIQVQSRITAEMGGDKD------GIITTRLLVPTNQIGCLLGKGGSIIEDMRRAT 374
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
A++RVL D P + + +V++ G+ +AL V+ LR
Sbjct: 375 RANIRVLPKDTLPRCALDTDELVQIVGDTTVAREALFQVISRLR 418
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 147/319 (46%), Gaps = 46/319 (14%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS---------- 128
VFR++ P K+GS+IG+ G +IK +++ A+IK+ D +R++LIS
Sbjct: 4 VFRILCPAPKIGSVIGKGGSIIKTLRQESGAKIKIADAIPGVDERVILISSTDRGNDRGR 63
Query: 129 GKEEPEAPVSPAMDAAVRVFKRV------SGLPENDVDAKASGAAFCSVRLLVPSTQAIN 182
GK+ ++PA +A +V R+ SG+ +D + + S RLLVP+ Q
Sbjct: 64 GKDGNSEELTPAQEALFKVHARIIADVETSGIDGSDQEEEPSQQVV--TRLLVPNNQIGC 121
Query: 183 LIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
L+GK G +I+ +++ +GA +RVL D+ P + +V++ G+ + + KAL + L+
Sbjct: 122 LLGKGGKIIEQMRQTTGAQIRVLPKDQLPGCALPTDELVQVSGDVSTLKKALLFISARLQ 181
Query: 243 KFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER 302
+ + ++R A + T Y L
Sbjct: 182 E-----------------NPPRDRPQSYAAPAPAFVPVTDYLAKDSYRSKGTGHVFGLGP 224
Query: 303 EPQLESR-YRLS--GISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIG 359
EP LE R + +S +S+ QD R S GR SG ++ + P +IG
Sbjct: 225 EP-LEGRSWTISSGNLSLDRQDN-----RRSKEGRDSGE--NELVFRLLCPSDKIGSVIG 276
Query: 360 VGGTSIENIRRTSGAIITV 378
GG+ I N+R+ +GA I +
Sbjct: 277 KGGSIIHNLRKDTGARIKI 295
>gi|242045198|ref|XP_002460470.1| hypothetical protein SORBIDRAFT_02g028920 [Sorghum bicolor]
gi|241923847|gb|EER96991.1| hypothetical protein SORBIDRAFT_02g028920 [Sorghum bicolor]
Length = 371
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 101/190 (53%), Gaps = 11/190 (5%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAM 141
MI+ VGSIIG+ G I+ +T A IK+L+ S +R+V IS +E + SPA
Sbjct: 1 MIILNEMVGSIIGKGGSTIRALQSETGACIKILELVADSDERVVAISARENSDMMHSPAQ 60
Query: 142 DAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
DA VRV+ R+S E +D + A RLLVPS L+GK GS+I +++ +GAS
Sbjct: 61 DAVVRVYSRIS---EASMDRSSPTPA----RLLVPSQHIGCLLGKGGSIITEMRKITGAS 113
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ----GVLPLFEKT 257
+R+ ++ P ++ +V++ G + AL + G +R ++ + G +P +
Sbjct: 114 IRIFGNEQIPRCAQRNDEMVQVTGSFQSIQDALLHITGRIRDVILPKPHPSGGMPPYPPV 173
Query: 258 YNASISQERQ 267
N + Q RQ
Sbjct: 174 GNIPVHQSRQ 183
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
T T + IP Y + G G+ IE IR+ SGA ITV + + V I G Q +
Sbjct: 296 TSTTTEVVIPCKYIGFVCGNSGSEIEEIRQMSGASITVHDPKPGDTNSIVVICGDPEQTK 355
Query: 401 LAQQLIQEYM 410
AQ LI ++
Sbjct: 356 KAQSLIHAFI 365
>gi|413933626|gb|AFW68177.1| hypothetical protein ZEAMMB73_133887 [Zea mays]
Length = 282
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVL 126
++ KWPGWPG VFR++VP KVG+IIGRKGE IKK CE+T+ARIK+LDGP P+R V+
Sbjct: 220 DDNKWPGWPGESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVV 279
>gi|327275209|ref|XP_003222366.1| PREDICTED: poly(rC)-binding protein 3-like [Anolis carolinensis]
Length = 461
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 164/362 (45%), Gaps = 49/362 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G S P+RIV I+G
Sbjct: 19 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGPT-------- 68
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D++A + + S +RL++P++Q +LIGK GS IK I
Sbjct: 69 --DAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEI 126
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 127 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 182
Query: 255 EKTYNASI---SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
K +A I + + +T + HA + P+ + + P + S +
Sbjct: 183 PKPASAPIIFAGGQVRADTLLASAGNHAVLAQP---QTAPAFTIQGQYAIPHPDVSSMHV 239
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQT-----------------MQIPISYA 354
L +Y P+L+ + A+ P T + QT + IP
Sbjct: 240 L--YFLYSLLPSLTKLHQLAMQH---PPFTPLGQTTPGFPGLDASTPASSHELTIPNDLI 294
Query: 355 EDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
IIG G+ I IR+ SGA I + + E V I G+ + + LAQ LI + K
Sbjct: 295 GCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLINASLEMAK 354
Query: 415 ES 416
S
Sbjct: 355 VS 356
>gi|219887089|gb|ACL53919.1| unknown [Zea mays]
gi|414868823|tpg|DAA47380.1| TPA: hypothetical protein ZEAMMB73_380288 [Zea mays]
Length = 217
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 82/131 (62%), Gaps = 10/131 (7%)
Query: 314 GISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
GIS YG+D A + +A G +Q+T +MQ+P+SYA+ +IG G SI IRR SG
Sbjct: 65 GISSYGRD-APPSAPPGNQNQAHG--SSQVTHSMQVPLSYADAVIGAAGASISYIRRHSG 121
Query: 374 AIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM---NNHKESITSSYGQ-IDTGYR 429
A I++QE G P E+TVEI G++SQVQ AQQLI+ +M + +GQ +DTGY
Sbjct: 122 ATISIQE--GAPGEMTVEITGSASQVQTAQQLIKNFMAEASPQGPPAPGPHGQPVDTGYG 179
Query: 430 PSYPQLGNSSY 440
SYP G +SY
Sbjct: 180 -SYPPYGGASY 189
>gi|110224788|emb|CAL07994.1| putative nucleic acid binding protein [Platanus x acerifolia]
Length = 288
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R++ P +G +IG+ G +IK+ +++ A IKV + D I+ IS KE E P+SP
Sbjct: 98 LRLVCPTGNIGGVIGKGGSVIKQIRQESGAFIKVDSSAAEADDCIISISSKEFFEDPISP 157
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+DAAVR+ + S + + SG + + RLLVP+++ LIGK GS+I +++ +
Sbjct: 158 TIDAAVRLQPKCS-----EKSDRESGDSTFTTRLLVPTSRIGCLIGKGGSIISEMRKVTK 212
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR-KFLVDQGVLPLF 254
A++R+LS + P +ED+ +V++ G+ AL V L+ F +G L F
Sbjct: 213 ANIRILSKENLPKVASEDDEMVQITGDLDVARNALIQVTTRLKTNFFEREGALSAF 268
>gi|302754958|ref|XP_002960903.1| hypothetical protein SELMODRAFT_73985 [Selaginella moellendorffii]
gi|300171842|gb|EFJ38442.1| hypothetical protein SELMODRAFT_73985 [Selaginella moellendorffii]
Length = 502
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 7/167 (4%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
G R++ P K+GS+IG+ G +I+ E+T ARIK+ D ++ +R++ I+ E
Sbjct: 273 GEFAVRLLCPNEKIGSVIGKGGMIIRSIREETCARIKIADAVANAEERVIHITSNEVLHE 332
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
VSPA++A +++ R+S D A+ GA + R LVPS L+GK+GS+I ++
Sbjct: 333 QVSPALEAVLQLQSRIS-----DPSAEKDGAM--TTRFLVPSANIGCLLGKKGSIIADMR 385
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
N+ A++RVLS + P ED+ +V++ G+ A+ ++ LR
Sbjct: 386 RNTRANIRVLSKEALPKCAHEDDELVQVVGDITVARDAVIEIITRLR 432
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 33/199 (16%)
Query: 60 PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS 119
P+AAA P + V+R++ P K+GS+IG+ G +IK +T A+IKV DG
Sbjct: 36 PEAAAPPVDD--------VVYRILCPGAKIGSVIGKGGSIIKSLRNETGAKIKVADGIPG 87
Query: 120 SPDRIVLISGKEEPEA---------------------PVSPAMDAAVRVFKRVSGLPEND 158
S +R++ IS +E E P+ + +A +VF R+ + +
Sbjct: 88 SDERVIFISPRERREGKPRGGSKEMDKDKEQNGEESTPLPASQEALFKVFARI--VEGEE 145
Query: 159 VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDE 218
D + + RLLVPS Q L+GK G +I+ ++ SGA +RVL ++ P +
Sbjct: 146 FDEDEDSSRNVTARLLVPSNQIGCLLGKAGKIIEQMRVESGAQIRVLPREQLPKCAYHTD 205
Query: 219 RIVEMQGEAAKVLKALEAV 237
+ + GE A V KAL +
Sbjct: 206 EL--LTGELALVKKALTTI 222
>gi|302767378|ref|XP_002967109.1| hypothetical protein SELMODRAFT_87147 [Selaginella moellendorffii]
gi|300165100|gb|EFJ31708.1| hypothetical protein SELMODRAFT_87147 [Selaginella moellendorffii]
Length = 506
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 7/167 (4%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
G R++ P K+GS+IG+ G +I+ E+T ARIK+ D ++ +R++ I+ E
Sbjct: 277 GEFAVRLLCPNEKIGSVIGKGGMIIRSIREETCARIKIADAVANAEERVIHITSNEVLHE 336
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
VSPA++A +++ R+S D A+ GA + R LVPS L+GK+GS+I ++
Sbjct: 337 QVSPALEAVLQLQSRIS-----DPSAEKDGAM--TTRFLVPSANIGCLLGKKGSIIADMR 389
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
N+ A++RVLS + P ED+ +V++ G+ A+ ++ LR
Sbjct: 390 RNTRANIRVLSKEALPKCAHEDDELVQVVGDITVARDAVIEIITRLR 436
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 33/201 (16%)
Query: 60 PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS 119
P+AAA P + V+R++ P K+GS+IG+ G +IK +T A+IKV DG
Sbjct: 36 PEAAAPPVDD--------VVYRILCPGAKIGSVIGKGGSIIKSLRNETGAKIKVADGIPG 87
Query: 120 SPDRIVLISG--------------------KE---EPEAPVSPAMDAAVRVFKRVSGLPE 156
S +R++ IS KE E P+ + +A +VF R+ +
Sbjct: 88 SDERVIFISASPRERREGKPRGGSKEMDKDKEQNGEESTPLPASQEALFKVFARI--VEG 145
Query: 157 NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
+ D + + RLLVPS Q L+GK G +I+ ++ SGA +RVL ++ P
Sbjct: 146 EEFDEDEDSSRNVTARLLVPSNQIGCLLGKAGKIIEQMRVESGAQIRVLPREQLPKCAYH 205
Query: 217 DERIVEMQGEAAKVLKALEAV 237
+ +V++ GE A V KAL +
Sbjct: 206 TDELVQLTGELALVKKALTTI 226
>gi|449527609|ref|XP_004170802.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 546
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-------SGKE 131
V+R + PV K+GS+IGR GE++K+ DT+++I++ + S +R++ I + E
Sbjct: 44 VYRYLCPVKKIGSVIGRGGEIVKQLRIDTKSKIRIGETVPGSDERVITIYSASNETNSLE 103
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
E VSPA +A ++ RV D D++ G + RLLVPS Q +IGK G ++
Sbjct: 104 ESSDYVSPAQEALFKIHDRVVADDYMDEDSEGGGHQV-TARLLVPSDQIGCIIGKGGQIV 162
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
++I+ +GA VR+L D P + +V++ GE V KAL + L
Sbjct: 163 QNIRTETGAQVRILKDDHLPRCALSSDELVQISGEPLIVKKALYQIASRL 212
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I P +G +IG+ G +I + ++T+A IKV D ++ IS KE E SP
Sbjct: 273 LRLICPTENIGGVIGKGGAIINQIRQETKAAIKVDSSATEGDDCLINISSKEFFEDSYSP 332
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
++AA+R+ R S E D SG + RLLVP+++ LIGK G++I ++ +
Sbjct: 333 TLEAALRLQPRCSEKVERD-----SGIISFTTRLLVPTSRIGCLIGKGGAIITELRRLTK 387
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ-----GVLPLF 254
A++R+LS + P ED+ +V++ G+ +AL +V LR L D+ VLP+
Sbjct: 388 ANIRILSKENLPKVALEDDEMVQISGDLDVAKEALVHIVTRLRANLFDREGALSAVLPVL 447
>gi|449447377|ref|XP_004141445.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 545
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-------SGKE 131
V+R + PV K+GS+IGR GE++K+ DT+++I++ + S +R++ I + E
Sbjct: 44 VYRYLCPVKKIGSVIGRGGEIVKQLRIDTKSKIRIGETVPGSDERVITIYSASNETNSLE 103
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
E VSPA +A ++ RV D D++ G + RLLVPS Q +IGK G ++
Sbjct: 104 ESSDYVSPAQEALFKIHDRVVADDYMDEDSEGGGHQV-TARLLVPSDQIGCIIGKGGQIV 162
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
++I+ +GA VR+L D P + +V++ GE V KAL + L
Sbjct: 163 QNIRTETGAQVRILKDDHLPRCALSSDELVQISGEPLIVKKALYQIASRL 212
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I P +G +IG+ G +I + ++T+A IKV D ++ IS KE E SP
Sbjct: 273 LRLICPTENIGGVIGKGGAIINQIRQETKAAIKVDSSATEGDDCLINISSKEFFEDSYSP 332
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
++AA+R+ R S E D SG + RLLVP+++ LIGK G++I ++ +
Sbjct: 333 TLEAALRLQPRCSEKVERD-----SGIISFTTRLLVPTSRIGCLIGKGGAIITELRRLTK 387
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ-----GVLPLF 254
A++R+LS + P ED+ +V++ G+ +AL +V LR L D+ VLP+
Sbjct: 388 ANIRILSKENLPKVALEDDEMVQISGDLDVAKEALVHIVTRLRANLFDREGALSAVLPVL 447
>gi|427796273|gb|JAA63588.1| Putative polyc-binding alphacp-1, partial [Rhipicephalus
pulchellus]
Length = 510
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 161/354 (45%), Gaps = 42/354 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KG+ IKK E++ A+I + DG S P+RIV ++G E +
Sbjct: 76 VRLIMQGKEVGSIIGKKGDNIKKFREESGAKINISDG--SCPERIVTVTGSTEA---ILK 130
Query: 140 AMDAAVRVFKRVSGL---PENDV-----DAKASGAAF----CSVRLLVPSTQAINLIGKQ 187
A R F+ + L P V + +++G+ ++RL+VP++Q +LIGK
Sbjct: 131 AFSLIARKFEEMLSLLCLPVQTVGPTLQELQSNGSHLPKPPVTLRLIVPASQCGSLIGKG 190
Query: 188 GSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD 247
GS IK I+E +GAS++V S ER V + G A + K + + + +
Sbjct: 191 GSKIKEIREVTGASIQVASE----MLPNSTERAVTVSGTAEAITKCIYQICCVMMESPPK 246
Query: 248 QGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLE 307
+P K + +A + Q AI + T+ L L+ P
Sbjct: 247 GATIPYRPKPAMPPV-------IFAGGQAYTVQGQYAI--PHPDLTKLHQLALQHAP--- 294
Query: 308 SRYRLSGISIYGQDP-ALSTIRSSALGRASGPIVTQITQT-----MQIPISYAEDIIGVG 361
L G S+ +P AL+ + ++ R + T + M IP IIG G
Sbjct: 295 ---LLPGHSVGAINPQALAALATTNNLRPNTAAAAIATASTTTTEMTIPNDLIGCIIGKG 351
Query: 362 GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
G+ I IR+ SGA I + S + TV I GT + LAQ LI M HK
Sbjct: 352 GSKINEIRQLSGATIKISNSEEGSKDRTVTISGTPEAINLAQYLINTSMELHKN 405
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 159 VDAKA--SGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
VD KA + +VRL++ + ++IGK+G IK +E SGA + + S P
Sbjct: 62 VDTKALDGPSVTLTVRLIMQGKEVGSIIGKKGDNIKKFREESGAKINI-SDGSCP----- 115
Query: 217 DERIVEMQGEAAKVLKALEAVVGHLRKF 244
ERIV + G +LKA + RKF
Sbjct: 116 -ERIVTVTGSTEAILKAFSLIA---RKF 139
>gi|148223740|ref|NP_001083021.1| poly(rC)-binding protein 3 [Danio rerio]
gi|134025331|gb|AAI35089.1| Zgc:162999 protein [Danio rerio]
Length = 350
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 158/350 (45%), Gaps = 60/350 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI V +G + P+RIV I+G
Sbjct: 18 IRLLMHGKEVGSIIGKKGETVKKMREESSARINVSEG--NCPERIVTITGPT-------- 67
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ +++A+ ++RL+VP++Q +LIGK GS IK +
Sbjct: 68 --DAIFKAFAMIAYKFEEDIINSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEM 125
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 126 RESTGAQVQV-AGDMLP---NSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYR 181
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K A + + + Q T P+T SL L+ +P L
Sbjct: 182 PKPATAPV--------------IFSGGQVRADTLTAPATANLSLLLQHQP-------LPA 220
Query: 315 ISIYGQ----DPALSTIRSSALGRASGPIVTQI--------------TQTMQIPISYAED 356
+I GQ P L+ + A+ + + Q T + IP
Sbjct: 221 YTIQGQYAIPHPDLTKLHQLAMQQTPFTSLGQTTPAFPGVDASSQASTHELTIPNDLIGC 280
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
IIG GT I IR+ SGA I + + + + I GT + + LAQ LI
Sbjct: 281 IIGRQGTKINEIRQMSGAQIKIANAMEGSSDRQITITGTPANISLAQYLI 330
>gi|224123472|ref|XP_002319086.1| predicted protein [Populus trichocarpa]
gi|222857462|gb|EEE95009.1| predicted protein [Populus trichocarpa]
Length = 179
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 54/77 (70%)
Query: 49 ESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTR 108
E++ A Q D + EK+WPGWPG VFRM+VP KVGSIIGRKGE IKK E+TR
Sbjct: 103 ENNEASKQGHDEDTVSGGGEKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETR 162
Query: 109 ARIKVLDGPVSSPDRIV 125
ARIK+LDGP + +R V
Sbjct: 163 ARIKILDGPPGTTERAV 179
>gi|414586732|tpg|DAA37303.1| TPA: hypothetical protein ZEAMMB73_623211 [Zea mays]
Length = 322
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 82/131 (62%), Gaps = 7/131 (5%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAM 141
M++P KVG+IIG KGE +++ CE+TRA ++++ G + ++ V+I G+E+ + P+ PAM
Sbjct: 1 MLIPAQKVGAIIGHKGERVRRLCEETRACVRIIGGHLCEAEQAVIIFGREQLDEPLPPAM 60
Query: 142 DAAVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGA 200
DA +RV+++ DV G VR +L PS QA +LIG+ G +I SI E S
Sbjct: 61 DALLRVYQQTINNDSLDV-----GPDNVIVRQILAPSEQAASLIGEHGVMINSIMEASQT 115
Query: 201 SVRVLSADEAP 211
+RVL +E P
Sbjct: 116 VIRVL-GNELP 125
>gi|147855522|emb|CAN83854.1| hypothetical protein VITISV_031103 [Vitis vinifera]
Length = 321
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 118/226 (52%), Gaps = 6/226 (2%)
Query: 22 ETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFR 81
E ++P +SEAP S + + + D + S + A K +FR
Sbjct: 4 EAEVPKTPIPQSEAPAPSESTSMKRPRDDDGGVIASATGEVADDHRSPKRRAKNQDVLFR 63
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAM 141
++VP ++G +IG++G I+K E+T+A IK+ D +R+++IS K + E +S A
Sbjct: 64 IVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISSK-DSENVISDAE 122
Query: 142 DAAVRVFKRVSGLPENDVDAKASGAAFC---SVRLLVPSTQAINLIGKQGSLIKSIQENS 198
+A ++ + +++ DA G ++RLL+ +QA LIG G I+ ++ +S
Sbjct: 123 NALLQXASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSGQNIEKLRNSS 182
Query: 199 GASVRVLSADEAPFYVT--EDERIVEMQGEAAKVLKALEAVVGHLR 242
GA++ +L ++ P + + +R+V++ G+ VLKALE + LR
Sbjct: 183 GATITILPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLR 228
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 44/264 (16%)
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVL 231
R++VPS Q +IGK+GS I+ I+E + A++++ A +ER++ +
Sbjct: 63 RIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADA-----IARHEERVIIISS------ 111
Query: 232 KALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSA-----IS 286
K E V+ L+ L L E N + A+ L A A +S
Sbjct: 112 KDSENVISDAENALLQXASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMS 171
Query: 287 TEYTPSTRRES------LFLEREPQLESRY---RLSGISIYGQDPAL--------STIRS 329
+ R S L + P S + R+ + I G PA+ +R+
Sbjct: 172 GQNIEKLRNSSGATITILPQNQLPLCASAHDSDRM--VQISGDVPAVLKALEEIGCQLRT 229
Query: 330 SALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
+ L +T M IP + +IG G++I IR SGA+I V +G +
Sbjct: 230 TNLA------ADYVTLNMMIPETLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQNHRQ 283
Query: 390 VEIKGTSS---QVQLAQQLIQEYM 410
++ G++ QV LA+Q + EY+
Sbjct: 284 IQFGGSAQQAYQVALAKQRVDEYI 307
>gi|115479947|ref|NP_001063567.1| Os09g0498600 [Oryza sativa Japonica Group]
gi|113631800|dbj|BAF25481.1| Os09g0498600 [Oryza sativa Japonica Group]
gi|215695028|dbj|BAG90219.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 398
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFRMI VGSIIG+ G I+ +T A IK+++ S +R+++IS E E S
Sbjct: 27 VFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEMMHS 86
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA DA +RV R+S E+ +D ++ + RLLVPS L+GK GS+I +++ +
Sbjct: 87 PAQDAVLRVHSRIS---ESSMDKSSA----VTARLLVPSQHIGCLLGKGGSIIAEMRKIT 139
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
GA +R+ ++ P ++ +V++ G + AL + G +R ++
Sbjct: 140 GAGIRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDVII 187
>gi|222641854|gb|EEE69986.1| hypothetical protein OsJ_29891 [Oryza sativa Japonica Group]
Length = 609
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFRMI VGSIIG+ G I+ +T A IK+++ S +R+++IS E E S
Sbjct: 238 VFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEMMHS 297
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA DA +RV R+S E+ +D ++ + RLLVPS L+GK GS+I +++ +
Sbjct: 298 PAQDAVLRVHSRIS---ESSMDKSSA----VTARLLVPSQHIGCLLGKGGSIIAEMRKIT 350
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
GA +R+ ++ P ++ +V++ G + AL + G +R ++
Sbjct: 351 GAGIRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDVII 398
>gi|224131214|ref|XP_002328483.1| predicted protein [Populus trichocarpa]
gi|222838198|gb|EEE76563.1| predicted protein [Populus trichocarpa]
Length = 218
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 48/61 (78%)
Query: 68 EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
EK+WPGWPG VFRM+VP KVGSIIGRKGE IKK E+TRARIK+LDGP + +R V
Sbjct: 124 EKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVSF 183
Query: 128 S 128
S
Sbjct: 184 S 184
>gi|218202392|gb|EEC84819.1| hypothetical protein OsI_31905 [Oryza sativa Indica Group]
Length = 617
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFRMI VGSIIG+ G I+ +T A IK+++ S +R+++IS E E S
Sbjct: 246 VFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEMMHS 305
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA DA +RV R+S E+ +D ++ + RLLVPS L+GK GS+I +++ +
Sbjct: 306 PAQDAVLRVHSRIS---ESSMDKSSA----VTARLLVPSQHIGCLLGKGGSIIAEMRKIT 358
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
GA +R+ ++ P ++ +V++ G + AL + G +R ++
Sbjct: 359 GAGIRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDVII 406
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 24/152 (15%)
Query: 100 IKKTCEDTRA-------RIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVS 152
++ C +RA R +D P + ++ ISG P+AP AVR ++RV
Sbjct: 38 LRILCPSSRASALRGASRDLHVDQPPVGDEAVLSISG---PDAPA-----VAVRAWERVV 89
Query: 153 GLPENDVDA------KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL- 205
G +A + G C R+L S Q ++GK G ++ +++ SGA +RV
Sbjct: 90 GHRVGGDEAAGEEEREVPGVVGC--RMLAASGQVGCVLGKGGKTVERMRQESGAQIRVFR 147
Query: 206 SADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+ D+ P + + ++ + G + V KAL V
Sbjct: 148 NRDQLPPWAAPVDELIHISGNFSAVRKALLLV 179
>gi|326917277|ref|XP_003204927.1| PREDICTED: poly(rC)-binding protein 3-like [Meleagris gallopavo]
Length = 448
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 162/347 (46%), Gaps = 35/347 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G S P+RIV I+G
Sbjct: 19 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGPT-------- 68
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D++A + ++ S +RL+VP++Q +LIGK GS IK I
Sbjct: 69 --DAIFKAFSMIALKFEEDINASMTNSSVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 127 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 182
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAIST-EYTPSTRRESLFLEREPQLESRYRLS 313
K +A I + AD A + ++ + P+ + + P L ++L+
Sbjct: 183 PKPASAPIIFAGG-QVRADTILASAGNHTVLAQPQPAPAFTIQGQYAIPHPDLTKLHQLA 241
Query: 314 GISIYGQDPALSTIRSSALG----RASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
Q P + + + G A+ P + + IP IIG G+ I IR
Sbjct: 242 -----MQHPPFTPLGQTTPGFPGLDATSPTS---SHELTIPNDLIGCIIGRQGSKINEIR 293
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+ SGA I + + E V I G+ + + LAQ LI + K S
Sbjct: 294 QMSGAQIKIANATEGSAERQVTITGSPANISLAQYLINASLEMAKVS 340
>gi|118086587|ref|XP_419049.2| PREDICTED: poly(rC)-binding protein 3 [Gallus gallus]
Length = 448
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 161/347 (46%), Gaps = 35/347 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G S P+RIV I+G
Sbjct: 19 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGPT-------- 68
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D++A + + S +RL+VP++Q +LIGK GS IK I
Sbjct: 69 --DAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 127 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 182
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAIST-EYTPSTRRESLFLEREPQLESRYRLS 313
K +A I + AD A + ++ + P+ + + P L ++L+
Sbjct: 183 PKPASAPIIFAGG-QVRADTILASAGNHTVLAQPQPAPAFTIQGQYAIPHPDLTKLHQLA 241
Query: 314 GISIYGQDPALSTIRSSALG----RASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
Q P + + + G A+ P + + IP IIG G+ I IR
Sbjct: 242 -----MQHPPFTPLGQTTPGFPGLDATSPTS---SHELTIPNDLIGCIIGRQGSKINEIR 293
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+ SGA I + + E V I G+ + + LAQ LI + K S
Sbjct: 294 QMSGAQIKIANATEGSAERQVTITGSPANISLAQYLINASLEMAKVS 340
>gi|357447239|ref|XP_003593895.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|357447243|ref|XP_003593897.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482943|gb|AES64146.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482945|gb|AES64148.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
Length = 631
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 30/339 (8%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+ RM+ P K+G +IG+ G IK+ + + ARI+V D + ++ I+ E S
Sbjct: 313 IVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDLKS 372
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A++A + + +++ ND D A S+RLLVPS +IG+ G++I I++ +
Sbjct: 373 VAVEAVLLLQEKI-----NDEDD-----APVSIRLLVPSKVIGCIIGRSGAIINEIRKRT 422
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
A +++ S P Y +++ +VE+ GE V AL +V LR + VL + +
Sbjct: 423 KADIQI-SRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLR-----EDVLKNKDIDH 476
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
N I E +A S L A P+T + +R S S Y
Sbjct: 477 NRHIGSE---SLYASSSVLSAPPM----LSSIPATAPALAYDQRTGSGTGLGMHSSRSHY 529
Query: 319 G------QDPALSTIRSSALGRASGPIVTQI-TQTMQIPISYAEDIIGVGGTSIENIRRT 371
G +D ++ S A G + + T M +P + ++G GG ++ NIR+
Sbjct: 530 GYDSYSMEDNGYGSMSSYATNLYEGHRLPPLSTLEMVVPANAVGKVMGKGGANLANIRKI 589
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
SGA + + ES+ + I GTS + + A+ LIQ ++
Sbjct: 590 SGATVEISESKSYRGDRVALISGTSEEKRAAENLIQAFI 628
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI------------ 127
+R++ P +GS+IG+ G++I +++RA++KV+D + R++ I
Sbjct: 44 YRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEI 103
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQ 187
+ + E P+ A DA ++V +S E D++ ++LVPS+Q+ LIGK
Sbjct: 104 EDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKKRKNKDECQILVPSSQSAILIGKA 163
Query: 188 GSLIKSIQENSGASVRVL---SADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
G+ IK ++ + +++V+ +AD E + V + GE+ V +AL AV + KF
Sbjct: 164 GATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFV-LVGESEAVKRALFAVSTIMYKF 222
>gi|356550877|ref|XP_003543809.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 561
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++ P +G +IG+ G +I + +D+ A IKV + + ++ IS KE E SP
Sbjct: 286 RLVCPTGNIGGVIGKGGMIINQIRQDSGATIKVDSSTIEGDECLIAISTKEFFEETFSPT 345
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
++AAVR+ R S E D SG + RLLVP+T+ LIGK GS+I ++ + A
Sbjct: 346 IEAAVRLQPRCSEKVERD-----SGIISFTTRLLVPTTRIGCLIGKGGSIITDMRRLTKA 400
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD-QGVLPLF 254
++R++S + P ED+ +V++ G+ AL V+ LR L D +G L F
Sbjct: 401 NIRIISKENLPKIANEDDEMVQISGDLDVAKDALVHVLTRLRANLFDREGALSAF 455
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 8/171 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG-KEEPEAP- 136
V+R + P K+GS+IGR GE++K+ +T+A+I++ + +R+V I G +E A
Sbjct: 43 VYRYVCPGRKIGSVIGRGGEIVKQLRVETKAKIRIGETVPGCEERVVTIYGPSDETNAVE 102
Query: 137 -----VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
VSPA DA +V RV + D G + +LLVPS Q +IGK GS++
Sbjct: 103 GGGNYVSPAQDALFKVHDRVVA-EDFHGDQDDDGGQQVTAKLLVPSDQIGCVIGKGGSIV 161
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
++I+ +GA +R+L D P + +V++ G+AA V KAL + L
Sbjct: 162 QNIRGETGAQIRILKDDHLPMCALSSDELVQITGDAAVVKKALYQIASRLH 212
>gi|15217969|ref|NP_175569.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|12321677|gb|AAG50879.1|AC025294_17 hypothetical protein [Arabidopsis thaliana]
gi|12325367|gb|AAG52626.1|AC024261_13 hypothetical protein; 15135-12645 [Arabidopsis thaliana]
gi|31711718|gb|AAP68215.1| At1g51580 [Arabidopsis thaliana]
gi|110735740|dbj|BAE99849.1| hypothetical protein [Arabidopsis thaliana]
gi|332194564|gb|AEE32685.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 621
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 29/232 (12%)
Query: 14 LPEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPG 73
P+P PE + E PP + +P+ GP V EE+
Sbjct: 234 FPQPGYPPEYHSMEYHPQWDHPPP--------------NPMPEDVGPFNRPVVEEE---- 275
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEP 133
FR++ P KVGS+IG+ G +++ ++ A IKV D S +RI++IS +E
Sbjct: 276 ----VAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENL 331
Query: 134 EAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKS 193
E S A D +RV R+ V+ +A RLLV S L+GK G LI
Sbjct: 332 ERRHSLAQDGVMRVHNRI-------VEIGFEPSAAVVARLLVHSPYIGRLLGKGGHLISE 384
Query: 194 IQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
++ +GAS+RV + D+A Y ++ + IV++ G V AL ++ LR+ +
Sbjct: 385 MRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAM 436
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 44/205 (21%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDG-PVSSPDRIVLI----------- 127
FR++ P + G+IIG+ G +I+ T ++I+V+D PV S +R+VLI
Sbjct: 21 FRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKDES 80
Query: 128 -------SGKEEP-----------------EAPVSPAMDAAVRVFKRV-----SGLPEND 158
G EEP EAP S M A +RVF+R+ + + D
Sbjct: 81 NVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQM-ALLRVFERIVFGDDAATVDGD 139
Query: 159 VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDE 218
K C R++V Q L+ K G +I+ I+E+SGA VR+ S D+ P +
Sbjct: 140 ELDKGESEGLC--RMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGD 197
Query: 219 RIVEMQGEAAKVLKALEAVVGHLRK 243
+++M G+ + V KAL V L++
Sbjct: 198 VVIQMNGKFSSVKKALLLVTNCLQE 222
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 50/253 (19%)
Query: 163 ASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
A+ A RLL P+T+ +IGK GS+I+ +Q +G+ +RV+ D+ P V +ER+V
Sbjct: 13 ATAAESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVI--DDIP--VPSEERVVL 68
Query: 223 MQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQ 282
+ + K K E+ N S+ E + A
Sbjct: 69 IIAPSGK--KKDES----------------------NVCDSENPGSEEPKQEKGSECAGT 104
Query: 283 SAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQ 342
S E PS+ + +L R+ ++G D A G + G +
Sbjct: 105 SGGDDEEAPSSAQMALL-----------RVFERIVFGDDAATVDGDELDKGESEG-LCRM 152
Query: 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR-----GLPDEITVEIKGTSS 397
I + Q+ + ++ GG I+ IR SGAI+ + + P ++ +++ G S
Sbjct: 153 IVRGNQV-----DYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFS 207
Query: 398 QVQLAQQLIQEYM 410
V+ A L+ +
Sbjct: 208 SVKKALLLVTNCL 220
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 327 IRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPD 386
+R+ +G + P++T + IP +Y + G +++ I++ SGA + V + +
Sbjct: 534 LRNEPIG-SENPVMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTT 592
Query: 387 EITVEIKGTSSQVQLAQQLIQEYM 410
E V + GTS Q AQ L+ ++
Sbjct: 593 EGLVVVSGTSDQAHFAQSLLHAFI 616
>gi|54290950|dbj|BAD61631.1| putative HEN4 [Oryza sativa Japonica Group]
Length = 662
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 155/349 (44%), Gaps = 35/349 (10%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+FR++ P KV S++G + L++ ED I++ D S +RI++I+ +E P+ +
Sbjct: 340 IFRILCPSDKVNSLVGTRDGLLEMLQEDVGVDIRLTDSLDGSDERIIIITSREGPDHELF 399
Query: 139 PAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PA +A + + + L P+ D + RLLVPS++ G+ GSL IQ
Sbjct: 400 PAQEALLHLQTHIVDLGPDKD--------NIITTRLLVPSSEIACFEGRDGSL-SDIQRQ 450
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ--GVLPLFE 255
+ A+V++L P E + ++++ GE AL + LR + + G L
Sbjct: 451 TSANVQILPRQALPSCALESDELIQIVGEIRAARDALVQITAKLRSYFYREIPGPNQLGN 510
Query: 256 KTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRES-----LFLEREPQLESRY 310
T + SIS + + S S ++ P++ ++S + E+ +
Sbjct: 511 ITVHGSISPAKGSPRGPYQGS-DIPMPSYQQAQHVPASWKDSGGGANMSFEQGSNIN--- 566
Query: 311 RLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRR 370
+R SA R + P+VT+ T + IP S + G+ + I
Sbjct: 567 --------------DDMRQSAAKRFAVPLVTRSTLEVVIPKSAVASLTMRAGSKLAQISE 612
Query: 371 TSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITS 419
SGA +T+ + R E V I GT Q AQ L+Q ++ + ++ I S
Sbjct: 613 MSGATVTLADERPDAIEKVVRISGTPEQADKAQSLLQGFILSIQDDIPS 661
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP--- 136
FR++ P KV G I K +DT A + + R++ S EA
Sbjct: 87 FRILCPQSKV---YGFPPSFIAKVRDDTNAVVTIHLPYPGDAVRVIETSDGARREADGRP 143
Query: 137 --VSPAMDAAVRVFKRVSGLPENDVD---------AKASGAAFCSVRLLVPSTQAINLIG 185
SPA +A + V +R+ +D D A + RL+VP L+G
Sbjct: 144 PSFSPAQEALLMVHRRILETEPDDGDEDGEYGPRAKDARDRGKVTTRLIVPRLHVGCLLG 203
Query: 186 KQGSLIKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
K G +I+ ++ + +R+L D+ P V+ E +V++ GE V KA+ + L++
Sbjct: 204 KGGKIIEQMRAETKTHIRILPRDQHTPRCVSLSEEVVQVVGEGNCVKKAVAIISDRLKES 263
Query: 245 L 245
L
Sbjct: 264 L 264
>gi|291237680|ref|XP_002738761.1| PREDICTED: poly(rC) binding protein 2-like [Saccoglossus
kowalevskii]
Length = 409
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 147/342 (42%), Gaps = 50/342 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+ GE IKK E + ARI + D S +RIV ++G E
Sbjct: 21 IRLIMQGKEVGSIIGKGGETIKKFREQSGARINISDS--SCAERIVTVTGSTE------- 71
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKSIQ 195
A F+ ++ E DV + ++ ++RL+VP++Q +LIGK GS IK I+
Sbjct: 72 ---AINNAFEMITKKFEEDVSNNMANSSTPKPPVTLRLVVPASQCGSLIGKGGSKIKEIR 128
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE 255
EN+GASV+V + D ER V + G + K + + + + +P
Sbjct: 129 ENTGASVQV-AGD---MLHQSTERAVTISGTPEAITKCVYQICCVMLESPPKGATIPYRP 184
Query: 256 KTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGI 315
K NA+ + A + Y + L ++ P L
Sbjct: 185 KPTNATATHPAY------------AVHGNYAVPYPDFMKLHHLTMQHTPFLP-------- 224
Query: 316 SIYGQDPALSTIRSSALGRASGPIV-TQITQTMQ------IPISYAEDIIGVGGTSIENI 368
GQ P T + G A+ TQ+ T Q IP +IG GG I I
Sbjct: 225 ---GQTPFTPTALNMGYGVANAASAGTQVATTGQQTYEIMIPNDLIGCVIGRGGAKINEI 281
Query: 369 RRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
R+ SGA I + S+ ++ +V I GT + LA LI +
Sbjct: 282 RQISGATIKIANSQEGSNDRSVTISGTVEAINLAHFLINSSL 323
>gi|125555220|gb|EAZ00826.1| hypothetical protein OsI_22856 [Oryza sativa Indica Group]
Length = 693
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 156/353 (44%), Gaps = 37/353 (10%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+FR++ P KV S++G + L++ ED I++ D S +RI++I+ +E P+ +
Sbjct: 340 IFRILCPSDKVNSLVGTRDGLLEMLQEDVGVDIRLTDSLDGSDERIIIITSREGPDHELF 399
Query: 139 PAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PA +A + + + L P+ D + RLLVPS++ G+ GSL IQ
Sbjct: 400 PAQEALLHLQTHIVDLGPDKD--------NIITTRLLVPSSEIACFEGRDGSL-SDIQRQ 450
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ--GVLPLFE 255
+ A+V++L P E + ++++ GE AL + LR + + G L
Sbjct: 451 TSANVQILPRQALPSCALESDELIQIVGEIRAARDALVQITAKLRSYFYREIPGPNQLGN 510
Query: 256 KTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRES-----LFLEREPQLESRY 310
T + SIS + + S S ++ P++ ++S + E+ +
Sbjct: 511 ITVHGSISPAKGSPRGPYQGS-DIPMPSYQQAQHVPASWKDSGGGANMSFEQGSNIN--- 566
Query: 311 RLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRR 370
+R SA R + P+VT+ T + IP S + G+ + I
Sbjct: 567 --------------DDMRQSAAKRFAVPLVTRSTLEVVIPKSAVASLTMRAGSKLAQISE 612
Query: 371 TSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM--NNHKESITSSY 421
SGA +T+ + R E V I GT Q AQ L+Q ++ + KE + +Y
Sbjct: 613 MSGATVTLADERPDAIEKVVRISGTPEQADKAQSLLQGFILSSKVKEKFSPNY 665
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP--- 136
FR++ P KV G I K +DT A + + R++ S EA
Sbjct: 87 FRILCPQSKV---YGFPPSFIAKVRDDTNAVVTIHLPYPGDAVRVIETSDGARREADGRP 143
Query: 137 --VSPAMDAAVRVFKRVSGLPENDVD---------AKASGAAFCSVRLLVPSTQAINLIG 185
SPA +A + V +R+ +D D A + RL+VP L+G
Sbjct: 144 PSFSPAQEALLMVHRRILETEPDDGDEDGEYGPRAKDARDRGKVTTRLIVPRLHVGCLLG 203
Query: 186 KQGSLIKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
K G +I+ ++ + +R+L D+ P V+ E +V++ GE V KA+ + L++
Sbjct: 204 KGGKIIEQMRAETKTHIRILPRDQHTPRCVSLSEEVVQVVGEGNCVKKAVAIISDRLKES 263
Query: 245 L 245
L
Sbjct: 264 L 264
>gi|384947752|gb|AFI37481.1| poly(rC)-binding protein 3 isoform 1 [Macaca mulatta]
Length = 370
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 159/341 (46%), Gaps = 38/341 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 95
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 96 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI + T+ L +++ P Q
Sbjct: 212 PKPASTPV-------IFAGGQAYTIQGQYAIP--HPDLTKLHQLAMQQTPFPPLGQTNPA 262
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 263 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 319
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 320 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 360
>gi|148699887|gb|EDL31834.1| poly(rC) binding protein 3, isoform CRA_c [Mus musculus]
Length = 373
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 159/341 (46%), Gaps = 38/341 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 51 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 100
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 101 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 158
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 159 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 214
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI + T+ L +++ P Q
Sbjct: 215 PKPASTPV-------IFAGGQAYTIQGQYAIP--HPDLTKLHQLAMQQTPFPPLGQTNPA 265
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 266 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 322
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 323 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 363
>gi|326512112|dbj|BAJ96037.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 541
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 99/185 (53%), Gaps = 11/185 (5%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P + + P V+R + K+GSIIGR GE+ K+ DT+A+I++ + + +R++
Sbjct: 28 PGDDTYAPGPDDTVYRYLCTSRKIGSIIGRGGEIAKQLRSDTQAKIRIGESVPACDERVI 87
Query: 126 LISGK-------EEPEAPVSPAMDAAVRVFKRVS--GLPENDVDAKASGAAFCSVRLLVP 176
I E+ E V PA DA RV ++++ P N + ++ G +VRLLVP
Sbjct: 88 TIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLATDDGPVNKENEESLGQV--TVRLLVP 145
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
S Q +IGK G +I+ I+ ++G+ +RVLS + P T + ++ + G+ V KAL
Sbjct: 146 SDQIGCIIGKGGHIIQGIRSDTGSQIRVLSNEHLPLCATSGDELLLITGDPMVVRKALLQ 205
Query: 237 VVGHL 241
V L
Sbjct: 206 VSSRL 210
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 97/180 (53%), Gaps = 13/180 (7%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+++ A IKV D + D I+ +S KE E PVSP +DA VR+ R S +DA+ S
Sbjct: 307 QESGAFIKV-DSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCS----EKIDAE-S 360
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G + RLLV +++ LIGK GS+I I+ S A++R++S + P ++DE +V +
Sbjct: 361 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLIS 420
Query: 225 GEAAKVLKALEAVVGHLR-KFLVDQGVLPLFEKT--YN---ASISQERQVETWADKSSLH 278
G+ AL + L+ F +G L F Y+ AS+S E+ + + +KS+ H
Sbjct: 421 GDLDFARHALLQITTRLKANFFEREGALSGFPPVIPYHPLPASVSDEKYL-SRDNKSAGH 479
>gi|26330216|dbj|BAC28838.1| unnamed protein product [Mus musculus]
Length = 370
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 159/341 (46%), Gaps = 38/341 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI + T+ L +++ P Q
Sbjct: 212 PKPASTPV-------IFAGGQAYTIQGQYAIP--HPDLTKLHQLAMQQTPFPPLGQTNPA 262
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 263 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 319
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 320 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 360
>gi|119629730|gb|EAX09325.1| poly(rC) binding protein 3, isoform CRA_c [Homo sapiens]
Length = 370
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 159/341 (46%), Gaps = 38/341 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 95
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 96 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI + T+ L +++ P Q
Sbjct: 212 PKPASTPV-------IFAGGQAYTIQGQYAIP--HPDLTKLHQLAMQQTPFPPLGQTNPA 262
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 263 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 319
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 320 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 360
>gi|109065035|ref|XP_001099540.1| PREDICTED: poly(rC)-binding protein 3-like isoform 4 [Macaca
mulatta]
Length = 370
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 159/341 (46%), Gaps = 38/341 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI + T+ L +++ P Q
Sbjct: 212 PKPASTPV-------IFAGGQAYTIQGQYAIP--HPDLTKLHQLAMQQTPFPPLGQTNPA 262
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 263 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 319
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 320 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 360
>gi|357496471|ref|XP_003618524.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493539|gb|AES74742.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 553
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGK-------E 131
VFR + P K+GSIIGR GE++K+ +T+A+I++ + +R+V + +
Sbjct: 48 VFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD 107
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ + VSPA DA ++ RV + D + G + +LLVPS Q ++GK G ++
Sbjct: 108 DGDKLVSPAEDALFKIHDRVVA-EDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIV 166
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
++++ +GA +R+L D P + +V++ G+AA V KAL + L
Sbjct: 167 QNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+D+ A IKV D D ++ IS KE E SP ++AAV + R S E D S
Sbjct: 316 QDSGATIKV-DSSAKGDDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSERD-----S 369
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G + RLLV S++ LIGK GS+I ++ + +++R+LS + P ++D+ +V++
Sbjct: 370 GIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQIS 429
Query: 225 GEAAKVLKALEAVVGHLRKFLVD-QGVLPLF 254
G+ AL V+ LR L D +G +P F
Sbjct: 430 GDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
>gi|348518109|ref|XP_003446574.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 349
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 159/341 (46%), Gaps = 43/341 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK ED+ ARI + +G + P+RIV I+G
Sbjct: 18 IRLLMHGKEVGSIIGKKGETVKKMREDSGARINISEG--NCPERIVTITGPT-------- 67
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK +
Sbjct: 68 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEM 125
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + L + +P
Sbjct: 126 RESTGAQVQV-AGDMLP---NSTERAVTISGAPEAIIQCVKQICVVLLESPPKGATIPYR 181
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRY 310
K + + Q R A ++L Q + P+ + + P L +
Sbjct: 182 PKPASTPVIFSGGQVRADPLGASTANLSLLLQH----QPLPAYTIQGQYAIPHPDLSKLH 237
Query: 311 RLSG----ISIYGQ-DPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSI 365
+L+ + GQ PA + +S +AS T + IP IIG GT I
Sbjct: 238 QLAMQQTPFTPLGQTTPAFPGLDAS--NQAS-------THELTIPNDLIGCIIGRQGTKI 288
Query: 366 ENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
IR+ SGA I + + E + I GT + + LAQ LI
Sbjct: 289 NEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLI 329
>gi|413949911|gb|AFW82560.1| hypothetical protein ZEAMMB73_842471 [Zea mays]
Length = 418
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 6/119 (5%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
KVG+IIG KGE +K+ CE+TRA ++++ G + + ++ V+I G+E+ + P+ PAMDA +RV
Sbjct: 117 KVGAIIGHKGERVKRLCEETRACVRIIGGHLCAAEQAVIIFGREQLDEPLPPAMDALLRV 176
Query: 148 FKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASVRVL 205
+++ DV G VR +L PS QA +LIG+ G +I SI E S +RVL
Sbjct: 177 YQQTINNDSLDV-----GPDNVIVRQILAPSEQAASLIGEHGVMINSIMEASQTDIRVL 230
>gi|224141011|ref|XP_002323868.1| predicted protein [Populus trichocarpa]
gi|222866870|gb|EEF04001.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 97/171 (56%), Gaps = 10/171 (5%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-------SGKE 131
V+R + P K+GSIIGR GE+IK+ DT+++I+V + +R+V I + E
Sbjct: 43 VYRYLCPARKIGSIIGRGGEIIKQLRIDTKSKIRVGETVPGCEERVVTIYSPSDETNEYE 102
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPEN-DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
+ +SPA DA RV +V + E+ V+ + G+ + +LLVPS Q +IGK G +
Sbjct: 103 DSGNYISPAQDALFRVHDKV--IAEDLQVEDDSEGSPQVTAKLLVPSDQIGCIIGKGGQI 160
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+++I+ +GA +R+L + P + +V++ GEAA + KAL + L
Sbjct: 161 VQNIRSETGAVIRILKDEHLPPCALSSDELVQISGEAAVLKKALYQIASRL 211
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R++ P +G++IG+ G +I + +++ A IKV D ++ IS KE + SP
Sbjct: 284 LRVVCPTANIGAVIGKGGTIINQIRQESGATIKVDSSVAEGDDCLITISAKEIYDH-YSP 342
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
++AAVR+ R S E D SG + RLLVPS++ L+GK G++I +++ +
Sbjct: 343 TIEAAVRLQPRCSEKMERD-----SGLISFTTRLLVPSSRIGCLLGKGGAIIDEMRKLTK 397
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ-----GVLPLF 254
A +R+ + P ++D+ +V++ G+ AL + LR + D+ +LP+
Sbjct: 398 AIIRIPRKENLPKVASDDDEMVQIAGDLDVAKDALIQISRRLRANVFDREGAMSAILPVL 457
>gi|357496469|ref|XP_003618523.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493538|gb|AES74741.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 569
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGK-------E 131
VFR + P K+GSIIGR GE++K+ +T+A+I++ + +R+V + +
Sbjct: 48 VFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD 107
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ + VSPA DA ++ RV + D + G + +LLVPS Q ++GK G ++
Sbjct: 108 DGDKLVSPAEDALFKIHDRVVA-EDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIV 166
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
++++ +GA +R+L D P + +V++ G+AA V KAL + L
Sbjct: 167 QNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+D+ A IKV D D ++ IS KE E SP ++AAV + R S E D S
Sbjct: 316 QDSGATIKV-DSSAKGDDCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSERD-----S 369
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G + RLLV S++ LIGK GS+I ++ + +++R+LS + P ++D+ +V++
Sbjct: 370 GIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQIS 429
Query: 225 GEAAKVLKALEAVVGHLRKFLVD-QGVLPLF 254
G+ AL V+ LR L D +G +P F
Sbjct: 430 GDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
>gi|332256670|ref|XP_003277439.1| PREDICTED: poly(rC)-binding protein 3 [Nomascus leucogenys]
Length = 393
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 43/355 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPS----------TRRESLFL 300
K + + Q R A ++L Q YT T+ L +
Sbjct: 212 PKPASTPVIFAGGQVRADPLAASTANLSLLLQHPPLPAYTIQGQYAIPHPDLTKLHQLAM 271
Query: 301 EREP-----QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAE 355
++ P Q + + ++ + A + + S+ AS P T + IP
Sbjct: 272 QQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIG 328
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
IIG GT I IR+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 329 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 383
>gi|348503027|ref|XP_003439068.1| PREDICTED: poly(rC)-binding protein 4-like [Oreochromis niloticus]
Length = 446
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 162/355 (45%), Gaps = 51/355 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ AR+ + +G S P+RI+ I+G
Sbjct: 18 LRLLMHGKEVGSIIGKKGETVKRIREESSARVNISEG--SCPERIITITG---------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+ D+ R F ++ E D+ A + S +RL++P++Q +LIGK G+ IK I
Sbjct: 66 STDSVFRAFTMITYKLEEDLTALVANGTISSKPPVTLRLVIPASQCGSLIGKGGAKIKEI 125
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA ++V + D P ER V + G V++ ++ + + + +P
Sbjct: 126 RESTGAQIQV-AGDLLP---NSTERGVTISGNQDSVIQCVKLICTVILESPPKGATIPYR 181
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTP----STRRESLFLEREPQLESRY 310
A++ L A Q ++E+ P S + L L++ L+++Y
Sbjct: 182 PSPSPAAL--------------LIAGNQVFEASEFAPHPLYSVAQGGLDLQQAYTLQNQY 227
Query: 311 --------RLSGISIY-GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVG 361
+L +S+ G P + G S +Q +Q + IP IIG
Sbjct: 228 GIPHSELAKLHQLSVQQGLSPIAQPASAVIPGMDSN---SQTSQELLIPNDLIGSIIGRQ 284
Query: 362 GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
GT I IR+ SGA I + + V I GT + LAQ LI + K +
Sbjct: 285 GTKINEIRQVSGAQIKIGSQLDGTSDRHVTITGTPVSINLAQYLITSCLETAKST 339
>gi|390478281|ref|XP_002761548.2| PREDICTED: poly(rC)-binding protein 3 [Callithrix jacchus]
Length = 393
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 43/355 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPS----------TRRESLFL 300
K + + Q R A ++L Q YT T+ L +
Sbjct: 212 PKPASTPVIFAGGQVRADPLAASTANLSLLLQHPPLPAYTIQGQYAIPHPDLTKLHQLAM 271
Query: 301 EREP-----QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAE 355
++ P Q + + ++ + A + + S+ AS P T + IP
Sbjct: 272 QQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIG 328
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
IIG GT I IR+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 329 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 383
>gi|297807547|ref|XP_002871657.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297317494|gb|EFH47916.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 544
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 8/170 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-------SGKE 131
VFR + PV K+GS+IGR GE++K+ DTR++I++ + +R++ I +
Sbjct: 45 VFRYLCPVKKIGSVIGRGGEIVKQLRMDTRSKIRIGEAIPGCDERVITIYSPSDETNAFG 104
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ E +SPA DA R+ RV D+ + G + +LLVPS Q ++G+ G ++
Sbjct: 105 DGEKVLSPAQDALFRIHDRVVADDAQSEDS-SEGEQQVTAKLLVPSDQIGCILGRGGQIV 163
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
++I+ +GA +R++ P + ++++ GE V KAL + L
Sbjct: 164 QNIRSETGAQIRIIKDRNMPLCALNSDELIQISGEVLIVKKALHQIASRL 213
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 5/170 (2%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
R++ PV + S+IG+ G LI + ++TRA IKV D ++ IS +E E S
Sbjct: 281 FIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYS 340
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
P ++A +R+ + S E D SG + RLLVPS++ ++GK G++I ++ +
Sbjct: 341 PTIEAVMRLQPKCSEKVERD-----SGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMT 395
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
A++R+L + P ++D+ +V++ GE +AL + LR + D+
Sbjct: 396 KANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDR 445
>gi|119629731|gb|EAX09326.1| poly(rC) binding protein 3, isoform CRA_d [Homo sapiens]
Length = 393
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 43/355 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPS----------TRRESLFL 300
K + + Q R A ++L Q YT T+ L +
Sbjct: 212 PKPASTPVIFAGGQVRADPLAASTANLSLLLQHPPLPAYTIQGQYAIPHPDLTKLHQLAM 271
Query: 301 EREP-----QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAE 355
++ P Q + + ++ + A + + S+ AS P T + IP
Sbjct: 272 QQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIG 328
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
IIG GT I IR+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 329 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 383
>gi|224137186|ref|XP_002327061.1| predicted protein [Populus trichocarpa]
gi|222835376|gb|EEE73811.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 21/181 (11%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+FR++VP K+G +IG++G I+K EDT+A IK+ D +R+++IS KE
Sbjct: 52 IFRIVVPSGKIGKVIGKQGHRIQKIREDTKATIKIADAVARHEERVIIISSKENENG--- 108
Query: 139 PAMDAAVRVFKRVSGLPENDVD--------------AKASGAAFCSVRLLVPSTQAINLI 184
A DA +R++ L N+ D A A ++RLL+ +QA +LI
Sbjct: 109 -ATDAE-NALQRIAELILNEDDGGSSAGGGVEIGKLVNAGHVAANTIRLLIAGSQAGSLI 166
Query: 185 GKQGSLIKSIQENSGASVRVLSADEAPFYVT--EDERIVEMQGEAAKVLKALEAVVGHLR 242
G G I ++ +SGA + VL+ ++ P + E +R+V++ G+ VLKALE + LR
Sbjct: 167 GMSGQNIVKLRNSSGAMITVLAPNQLPLCASAYESDRVVQISGDVPVVLKALEEIGCQLR 226
Query: 243 K 243
+
Sbjct: 227 E 227
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
+T M +P + +IG G++I IR SGA+I V +G +++ G+S QV LA
Sbjct: 259 VTMEMMVPETMMGGLIGRSGSNISRIRVESGAVIKVHGGKGAQKHRHIQLAGSSQQVALA 318
Query: 403 QQLIQEYM 410
+Q + EY+
Sbjct: 319 KQRVDEYI 326
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 45/203 (22%)
Query: 76 GHCV---FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP--------DRI 124
GH R+++ + GS+IG G+ I K + A I VL P P DR+
Sbjct: 146 GHVAANTIRLLIAGSQAGSLIGMSGQNIVKLRNSSGAMITVL-APNQLPLCASAYESDRV 204
Query: 125 VLISG----------------KEEPEAPV---SPAMDAAVRVFKRVSGLPENDVDAKASG 165
V ISG +E P V SP+ + + F++ A +
Sbjct: 205 VQISGDVPVVLKALEEIGCQLRENPPKQVISISPSYNYSAVPFQQY---------APQAA 255
Query: 166 AAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG 225
A + ++ ++VP T LIG+ GS I I+ SGA ++V A + R +++ G
Sbjct: 256 ADYVTMEMMVPETMMGGLIGRSGSNISRIRVESGAVIKVHGGKGA-----QKHRHIQLAG 310
Query: 226 EAAKVLKALEAVVGHLRKFLVDQ 248
+ +V A + V ++ LV Q
Sbjct: 311 SSQQVALAKQRVDEYIYSQLVQQ 333
>gi|308081899|ref|NP_001183640.1| uncharacterized protein LOC100502234 [Zea mays]
gi|238013618|gb|ACR37844.1| unknown [Zea mays]
gi|414867002|tpg|DAA45559.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
gi|414867003|tpg|DAA45560.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
gi|414867004|tpg|DAA45561.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
Length = 541
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P + + P V+R + K+GSIIGR GE+ K+ +T+A+I++ + +R+V
Sbjct: 26 PGDDTYAPGPDDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIGESVPGCDERVV 85
Query: 126 LISGK-------EEPEAPVSPAMDAAVRVFKRVS---GLPENDVDAKASGAAFCSVRLLV 175
I + E V PA DA RV +R++ GL D + + +VRLLV
Sbjct: 86 TIFSTSRKTNTIDGAEDEVCPAQDALFRVHERLASDEGLGNEDSEEISPQV---TVRLLV 142
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALE 235
PS Q +IGK G +I+ I+ +GA +RVLS D P + ++++ G+ V KAL
Sbjct: 143 PSDQIGCIIGKGGQIIQGIRSETGAQIRVLSNDHIPACAISGDELLQISGDTVVVRKALH 202
Query: 236 AVVGHLRK 243
V L
Sbjct: 203 QVSSRLHN 210
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 122 DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAI 181
D I+ +S KE E PVSP +DAAVR+ R S D +++ ++ + RLLV +++
Sbjct: 323 DCIITVSAKEFFEDPVSPTIDAAVRLQPRCS----EKSDLESAEQSY-TTRLLVSTSRIG 377
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
LIGK GS+I I+ S A+VR+LS + P ED+ +V++ G AL + L
Sbjct: 378 CLIGKGGSIITEIRRTSRANVRILSKENVPKVAAEDDEMVQITGGLDVARNALVQIATRL 437
Query: 242 R-KFLVDQGVLPLF 254
+ F +G L F
Sbjct: 438 KANFFEREGSLSAF 451
>gi|432865686|ref|XP_004070563.1| PREDICTED: poly(rC)-binding protein 4-like [Oryzias latipes]
Length = 467
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 167/353 (47%), Gaps = 37/353 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ AR+ + +G S P+RI+ I+G
Sbjct: 29 LRLLMHGKEVGSIIGKKGETVKRIREESSARVNISEG--SCPERIITITG---------- 76
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+ D+ R F ++ E D+ A + S +RL++P++Q +LIGK G+ IK I
Sbjct: 77 STDSVFRAFTMITYKLEEDLTALVANGTISSKPPVTLRLVIPASQCGSLIGKGGAKIKEI 136
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA ++V + D P ER V + G V++ ++ + + + +P +
Sbjct: 137 RESTGAQIQV-AGDLLP---NSTERGVTISGNQDSVIQCVKLICTVILESPPKGATIP-Y 191
Query: 255 EKTYN--ASISQERQVETWADKS--SLHAATQSAISTEYTPSTRRESLFLEREPQLESRY 310
T + A + QV +D + L++ TQ + + + + + E L +
Sbjct: 192 RPTPSPAALLIAGNQVFEASDFAPHPLYSVTQGGLDLQQAYALQNQYGIPHSE--LAKLH 249
Query: 311 RLS---GISIYGQDPALSTIRSSALGRASGP----IVTQITQTMQIPISYAEDIIGVGGT 363
+LS G+S Q PA STI L P +Q +Q + IP IIG GT
Sbjct: 250 QLSVQQGLSPIAQ-PA-STIMPGKLLLHFLPSGMDSTSQTSQELLIPNDLIGSIIGRQGT 307
Query: 364 SIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
I IR+ SGA I + + V I GT + LAQ LI + K +
Sbjct: 308 KINEIRQVSGAQIKIGSQLDGTSDRHVTITGTPVSINLAQYLITSCLETAKST 360
>gi|356516077|ref|XP_003526723.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 647
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 170/380 (44%), Gaps = 31/380 (8%)
Query: 43 NTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGH-CVFRMIVPVLKVGSIIGRKGELIK 101
NT + +L + P AA V ++ + G+ G VFR++ PV KV IIG +++
Sbjct: 293 NTNSRNNNHPSLSYAMEPGAAPVVDDAQ--GFYGEELVFRILCPVEKVDLIIGESDGIVE 350
Query: 102 KTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA 161
+ +KV D S ++I++I+ +E P+ + PA +A + + R+ VD
Sbjct: 351 FLQSEVGVDVKVTDPVGGSDEQIIIITSEEGPDDELFPAQEALLHIQTRI-------VDL 403
Query: 162 KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ RL+VPS++ L GK SL I+ +GA++++L D+ P V + + +V
Sbjct: 404 VLDKDNTITTRLVVPSSEIECLDGKDVSL-SEIRRLTGANIQILPRDDLPLCVAKTDELV 462
Query: 222 EMQGEAAKVLKALEAVVGHLRKFL----VDQGVLPLFEKTYNASISQERQVETWADKSSL 277
++ GE A+ V LR +L + +PL A S + A+ S+
Sbjct: 463 QIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDPIPLPAPLPGAEASSSNNIVPVAETSTT 522
Query: 278 HAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASG 337
+ Q+ + P E Q ES R D LS L R +
Sbjct: 523 YQNVQTVAAA--LPPKETGGSSTEVGKQKESGRR---------DDVLS-----GLNRIAV 566
Query: 338 PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSS 397
P+VT+ T + IP +I + + I SGA +T+ E R + ++I GT
Sbjct: 567 PLVTRSTLEVVIPEYAVPKLIAKSKSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPE 626
Query: 398 QVQLAQQLIQEYMNNHKESI 417
Q + AQ L+Q ++ + +E +
Sbjct: 627 QAERAQSLLQGFILSTQEDV 646
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 136/338 (40%), Gaps = 59/338 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG--KEEPEAPV 137
+R++ LK G +IG+ G +IK + T A I V + +RI+ IS + +PE +
Sbjct: 63 YRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRM 122
Query: 138 ---SPAMDAAVRVFKRV------SGLPENDVDAKASGAAF-----CSVRLLVPSTQAINL 183
SPA +A + + +R+ G+ E+D + A + RL+V L
Sbjct: 123 PSFSPAQEALLLIHERILESDAAFGVAEDDEEYGAGRGGGAGRDRVATRLVVSRMHVGCL 182
Query: 184 IGKQGSLIKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+GK G +I+ ++ + +R+L D P V+ E IV++ G+ V AL + LR
Sbjct: 183 LGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNALVIISSRLR 242
Query: 243 KFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQS-----AISTEYTPS----T 293
+ SQ R D+S H S + +Y P +
Sbjct: 243 E-------------------SQHR------DRSHFHGRVHSPERFFSPDDDYVPHVTSGS 277
Query: 294 RRESL----FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQI 349
RR S+ F R SR Y +P + + A G +V +I
Sbjct: 278 RRSSVDGASFGSRGSNTNSRNNNHPSLSYAMEPGAAPVVDDAQGFYGEELVFRIL----C 333
Query: 350 PISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE 387
P+ + IIG +E ++ G + V + G DE
Sbjct: 334 PVEKVDLIIGESDGIVEFLQSEVGVDVKVTDPVGGSDE 371
>gi|302142130|emb|CBI19333.3| unnamed protein product [Vitis vinifera]
Length = 672
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 11/180 (6%)
Query: 67 EEKKWPGW--PGHCV-FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDR 123
E PGW P + FR++ +VG IIG+ G +IK +T IKVLDG S DR
Sbjct: 292 HESGMPGWMKPQDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDR 351
Query: 124 IVLISGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAIN 182
++ ISG P+ +SPA DA +RV R V +P D+K RLLV STQ
Sbjct: 352 VIFISGSAHPDDRISPAQDAVLRVQSRIVRAIP----DSKEKTVI---ARLLVSSTQIGC 404
Query: 183 LIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
L+GK G++I +++ SGA +R+L D+ P +E+E +V++ GE V +AL + LR
Sbjct: 405 LLGKGGAIIAEMRKLSGAHIRILGKDQIPKCASENEEVVQINGEFEAVQEALLQITTRLR 464
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 17/180 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEP- 133
PG VFR++ P K GS+IG+ G +I + ++T +++V + +R+VLI+G ++
Sbjct: 42 PGTVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDT 101
Query: 134 --------------EAPVSPAMDAAVRVFKRVS-GLPE-NDVDAKASGAAFCSVRLLVPS 177
E +S A + VF+R++ G E N D ++ + VRLLV S
Sbjct: 102 EADNEQSKEDDSQVEKGISSVQKALLLVFERMAEGESETNGGDEDSNKSPTFVVRLLVLS 161
Query: 178 TQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+Q L+GK GS+IK + SGA +R+L D+ P + + +V++ GE +AL+++
Sbjct: 162 SQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPLCASPSDELVQITGELDACKQALQSI 221
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 339 IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQ 398
I+T T + +P S I G G + IR+ S A IT+ E + E + I GT Q
Sbjct: 594 IITSTTVEVVVPRSLVPSIYGEDGGCLRQIRQISDAKITITEPKPGASETVIIISGTPEQ 653
Query: 399 VQLAQQLIQEYMNNHKES 416
AQ LIQ ++ + ES
Sbjct: 654 THAAQSLIQAFVLSETES 671
>gi|225458964|ref|XP_002283591.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 701
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 99/180 (55%), Gaps = 11/180 (6%)
Query: 67 EEKKWPGW--PGHCV-FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDR 123
E PGW P + FR++ +VG IIG+ G +IK +T IKVLDG S DR
Sbjct: 321 HESGMPGWMKPQDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDR 380
Query: 124 IVLISGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAIN 182
++ ISG P+ +SPA DA +RV R V +P+ S RLLV STQ
Sbjct: 381 VIFISGSAHPDDRISPAQDAVLRVQSRIVRAIPD-------SKEKTVIARLLVSSTQIGC 433
Query: 183 LIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
L+GK G++I +++ SGA +R+L D+ P +E+E +V++ GE V +AL + LR
Sbjct: 434 LLGKGGAIIAEMRKLSGAHIRILGKDQIPKCASENEEVVQINGEFEAVQEALLQITTRLR 493
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 46/213 (21%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE--- 131
PG VFR++ P K GS+IG+ G +I + ++T +++V + +R+VLI+G +
Sbjct: 42 PGTVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDT 101
Query: 132 ------------------------EP-----------------EAPVSPAMDAAVRVFKR 150
EP E +S A + VF+R
Sbjct: 102 EADNEQSKEDGEDTKAAEEVSDTKEPGENDEDKESVPVEDSQVEKGISSVQKALLLVFER 161
Query: 151 VS-GLPE-NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSAD 208
++ G E N D ++ + VRLLV S+Q L+GK GS+IK + SGA +R+L D
Sbjct: 162 MAEGESETNGGDEDSNKSPTFVVRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRD 221
Query: 209 EAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+ P + + +V++ GE +AL+++ L
Sbjct: 222 KLPLCASPSDELVQITGELDACKQALQSISQQL 254
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 339 IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQ 398
I+T T + +P S I G G + IR+ S A IT+ E + E + I GT Q
Sbjct: 623 IITSTTVEVVVPRSLVPSIYGEDGGCLRQIRQISDAKITITEPKPGASETVIIISGTPEQ 682
Query: 399 VQLAQQLIQEYMNNHKES 416
AQ LIQ ++ + ES
Sbjct: 683 THAAQSLIQAFVLSETES 700
>gi|255563372|ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538165|gb|EEF39776.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 698
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 101/178 (56%), Gaps = 12/178 (6%)
Query: 71 WPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGK 130
P PGH FR++ ++G IIG+ G +IK+ + + A+I++ + P S DR++ + +
Sbjct: 49 LPLPPGHVSFRLLCHASRIGGIIGKSGTIIKQLQQQSGAKIRIEESPAESSDRVITVIAE 108
Query: 131 ---------EEPEAPVSPAMDAAVRVFKRVSGL-PEND-VDAKASGAAFCSVRLLVPSTQ 179
E E VS A + +RVF+R+ + E+D ++ A G S R+L S Q
Sbjct: 109 GQIVSKVRVESEEVDVSRAQEGLIRVFERILEVAAESDGINVVAGGGGVVSCRMLAGSKQ 168
Query: 180 AINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
A ++IGK G +++ I+++ G +RVL+ D+ P +E ++E++G+ V KAL AV
Sbjct: 169 AGSVIGKGGKVVEKIRKDCGVKIRVLT-DKLPVCAGPNEEMIEIEGDILSVKKALIAV 225
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 22/167 (13%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ P VG +IG+ G +IK +T A I + S +R++ + E PE+ S
Sbjct: 306 VFKILCPNDMVGGVIGKGGTIIKALQNETGASITIGATIAESDERLITVIASENPESRYS 365
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A A V VF R L+VPS Q L+GK G +I +++ +
Sbjct: 366 AAQKAVVLVFSR----------------------LVVPSNQVGCLLGKGGIIISDMRKTT 403
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
G S+++L+ D+ P V E+E++V++ G+ V A+ V G LR L
Sbjct: 404 GTSIKILAGDQLPKCVPENEQVVQISGDFMNVKDAVYHVTGRLRDNL 450
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 339 IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR-GLPDEITVEIKGTSS 397
IVT T +++P + + G +++ +R+ SGA + V E R G D I V I GT
Sbjct: 621 IVTNTTVEIRVPENVIGSVYGENDSNLTRLRQISGAKVIVHEPRLGSSDRIIV-ISGTPD 679
Query: 398 QVQLAQQLIQEYM 410
+ Q AQ L+Q ++
Sbjct: 680 ETQAAQSLLQAFI 692
>gi|410899813|ref|XP_003963391.1| PREDICTED: poly(rC)-binding protein 4-like [Takifugu rubripes]
Length = 447
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 163/354 (46%), Gaps = 48/354 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ AR+ + +G S P+RI+ I+G
Sbjct: 18 LRLLMHGKEVGSIIGKKGETVKRIREESSARVNISEG--SCPERIITITG---------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF-----CSVRLLVPSTQAINLIGKQGSLIKSI 194
+ D R F ++ E D+ A + ++RL++P++Q +LIGK G+ IK I
Sbjct: 66 STDCVFRAFTMITHKLEEDLAALVANGTISTKPPVTLRLVIPASQCGSLIGKGGAKIKEI 125
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA ++V + D P ER V + G V++ ++ + + + +P
Sbjct: 126 RESTGAQIQV-AGDLLP---NSTERGVTISGNQDSVIQCVKLICTVILESPPKGATIPYR 181
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRY---- 310
A++ + L A++ A Y S + L L++ L+++Y
Sbjct: 182 PSPSPAAV--------LIAGNQLFDASEFATHPMY--SVAQGGLDLQQAYTLQNQYGIPH 231
Query: 311 ----RLSGISI-YGQDPA---LSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGG 362
+L +S+ G +P ST+ + + S Q +Q + IP IIG G
Sbjct: 232 SELAKLHQLSMQQGLNPIAQPASTVIPAGMDSNS-----QTSQELLIPNDLIGSIIGRQG 286
Query: 363 TSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
T I IR+ SGA I + + V I GT + LAQ LI + K +
Sbjct: 287 TKINEIRQVSGAQIKIGSQLDGTSDRHVTITGTPVSINLAQYLITSCLETAKST 340
>gi|348537598|ref|XP_003456280.1| PREDICTED: poly(rC)-binding protein 4-like [Oreochromis niloticus]
Length = 593
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 158/352 (44%), Gaps = 34/352 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G S P+RI+ I+G
Sbjct: 130 LRLLMHGKEVGSIIGKKGETVKRIREESSARINISEG--SCPERIITITGPT-------- 179
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
D R F ++ E D+ A + S +RL++P++Q +LIGK GS IK I
Sbjct: 180 --DCVFRAFTMITFKLEEDLMALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEI 237
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E +GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 238 RETTGAQVQV-AGDLLP---NSTEREVTISGSQDAIIQCVKLICTVILESPPKGATIPYR 293
Query: 255 -EKTYNASISQERQVETWADKSS--LHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
T + QV +D S L + Q + + T + +S + +L ++
Sbjct: 294 PSPTPGTVLLAGNQVFEASDFGSHPLFSVAQGGVDLQQTYAV--QSHYGIPHSELAKLHQ 351
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQ---ITQTMQIPISYAEDIIGVGGTSIENI 368
LS Q L+ I SA G + +Q + IP IIG GT I I
Sbjct: 352 LSM-----QQQGLAPISQSATQVLPGGVEANSQTTSQELLIPNDLIGSIIGRQGTKINEI 406
Query: 369 RRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
R+ SGA I + + V I GT + LAQ LI + K + SS
Sbjct: 407 RQVSGAQIKIGSQIDSTSDRHVTISGTPIAINLAQYLITSCLETAKSTAQSS 458
>gi|224135123|ref|XP_002321989.1| predicted protein [Populus trichocarpa]
gi|222868985|gb|EEF06116.1| predicted protein [Populus trichocarpa]
Length = 685
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 168/404 (41%), Gaps = 58/404 (14%)
Query: 34 EAPPTIGSE----NTEHTTESDSA--LPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVL 87
+ PP+ GS N + S A P G D A + P + VFR++ P+
Sbjct: 305 DGPPSFGSRLSGPNYRNNNYSSRAPGFPVDAGADPNA---DSAQPFYVEDLVFRILCPID 361
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD-RIVLISGKEEPEAPVSPAMDAAVR 146
KV ++G L+ + +KV D PVS D +I+ I +E P+ + PA +A +
Sbjct: 362 KVNRVVGESDGLVDLLQNEIGVDVKVAD-PVSGSDEQIITICSEEGPDDELFPAQEALLH 420
Query: 147 VFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLS 206
+ R+ VD A + RLLVPS++ L G+ GSL ++ +GA++ +L
Sbjct: 421 IQTRI-------VDLVADKDNIITTRLLVPSSEIGCLEGRDGSL-SEMESLTGATIEILP 472
Query: 207 ADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQ-- 264
+ P Y++ + +V++QGE AL V LR +L +F+K ++S
Sbjct: 473 KEMLPTYLSGTDELVQIQGEVKAARDALVEVTSRLRSYLYKD----VFQKDLPPTVSAPG 528
Query: 265 ------------------ERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQL 306
R+ + D + + QSA + + + R S E Q
Sbjct: 529 PAGTAGGLQAASSNNPTPAREGHSGGDPPATYQNVQSASTPQPSKDARGSS--AETVKQN 586
Query: 307 ESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIE 366
ES +R + + R +VT+ + IP +I +
Sbjct: 587 ESEHR-------------EDLPPPTMNRIPVTLVTRSILEVVIPEPAVPKLITKSKNKLA 633
Query: 367 NIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I SGA +T+ E R E ++I GT Q + AQ L+Q ++
Sbjct: 634 QISELSGANVTLVEDRPDVTEKIIQISGTPEQAERAQSLLQGFI 677
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 54/245 (22%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG--KEEPEAPV 137
+R++ +K G +IG+ G +IK + T A I V + +RI+ IS + +PE +
Sbjct: 88 YRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 147
Query: 138 ---SPAMDAAVRVFKRVSGLPENDV---------------DAKASGAAFCSVRLLVPSTQ 179
SPA +A + R+ END+ + G + RL+V
Sbjct: 148 PSFSPAQEALFLIHDRIL---ENDLQYGVVSSGAGGFEEDEYVGRGGNRVATRLVVSRMH 204
Query: 180 AINLIGKQGSLIKSIQENSGASVRVLSADEA-PFYVTEDERIVEMQGEAAKVLKALEAVV 238
L+GK G +I+ ++ + +R+L D P V+ E IV++ G+ V A+ +
Sbjct: 205 VGCLLGKGGKIIEQMRMETKTQIRILPRDHTLPRCVSVSEEIVQVIGDVNAVKNAVAIIS 264
Query: 239 GHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSA---ISTEYTP--ST 293
LR+ SQ R D+S H QS + +Y P +T
Sbjct: 265 SRLRE-------------------SQHR------DRSHFHGRVQSPERFLDDDYVPHMNT 299
Query: 294 RRESL 298
RR S+
Sbjct: 300 RRSSM 304
>gi|124359392|gb|ABN05856.1| KH, type 1 [Medicago truncatula]
Length = 564
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 10/247 (4%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
F++I ++G +IG+ G +I+ +T A + V DR++ I+ E PE+ SP
Sbjct: 131 FKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASESPESRYSP 190
Query: 140 AMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A A V VF R V E +D+ + + + +L+V S Q L+GK G ++ +++ +
Sbjct: 191 AQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGKGGVIVSEMRKAT 250
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV-----DQGVLPL 253
GAS+R++ D+ ++++++V++ GE + V AL G LR L G L
Sbjct: 251 GASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLFGGTLKSAGTRSL 310
Query: 254 FEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLS 313
+ S + +SSL A T + + P + SL + P + RL
Sbjct: 311 SSVQSDTSPYGRLRDVPLGSQSSLRADTNAFVRLRDVPLVGQSSLQADTSPYV----RLR 366
Query: 314 GISIYGQ 320
+S+ GQ
Sbjct: 367 DVSLGGQ 373
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 325 STIRSSALGRASG---PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES 381
ST R L SG IVT T + +P + G G+++ +R+ SGA + + E
Sbjct: 471 STSRKGGLELVSGSKSAIVTNTTIEIVVPEDTLYLVYGENGSNLARLRQISGAKVVIHEP 530
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
R + T+ + G+ + Q AQ L+Q ++ N
Sbjct: 531 RPGTSDRTIVLSGSPDETQAAQSLLQAFILN 561
>gi|395536907|ref|XP_003770450.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Sarcophilus
harrisii]
Length = 339
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 155/348 (44%), Gaps = 47/348 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLP-- 252
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 253 --------LFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP 304
+F +I + + + LH T + P + F +
Sbjct: 180 PKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQ--QTPFPPLGQTTPAFPGEKL 237
Query: 305 QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTS 364
L S ++ GQ P L AS P T + IP IIG GT
Sbjct: 238 PLHSSEEAQ--NLMGQSPGLD---------ASPPAS---THELTIPNDLIGCIIGRQGTK 283
Query: 365 IENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
I IR+ SGA I + + E + I GT + + LAQ LI + +
Sbjct: 284 INEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTS 331
>gi|357507881|ref|XP_003624229.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355499244|gb|AES80447.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 275
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 96/169 (56%), Gaps = 6/169 (3%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+FR++VP ++G +IG++G I+K E TRA IK+ D +R+++IS K+ E V+
Sbjct: 101 IFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDNDEM-VT 159
Query: 139 PAMDAAVRVFKRVSGLPENDVDAK---ASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
A A ++ + + DA A A ++RLL+ +QA LIG G I+ ++
Sbjct: 160 DAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLR 219
Query: 196 ENSGASVRVLSADEAPFYVT--EDERIVEMQGEAAKVLKALEAVVGHLR 242
+SGA + VL+ + P + E +R+V++ G+ + V+KALE + LR
Sbjct: 220 NSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLR 268
>gi|357112153|ref|XP_003557874.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 538
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P + + P V+R + K+GSIIGR GE+ K+ DT+A+I++ + +R++
Sbjct: 28 PGDDTYAPCPDDTVYRYLCASRKIGSIIGRGGEIAKQLRTDTQAKIRIGESVPGCDERVI 87
Query: 126 LISGK-------EEPEAPVSPAMDAAVRVFKRV-----SGLPENDVDAKASGAAFCSVRL 173
I E+ E V PA DA RV +++ G EN+ G A VRL
Sbjct: 88 TIFSSSRETNTVEDTEDKVCPAQDALFRVHEKLITDDGPGDEENE-----EGLAQVIVRL 142
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA 233
LVPS Q +IGK G +I+ I+ ++G+ +RVLS + P + ++++ G+ V KA
Sbjct: 143 LVPSDQIGCIIGKGGHIIQGIRSDTGSHIRVLSTEHLPACAISGDELLQISGDPLVVRKA 202
Query: 234 LEAVVGHLR 242
L V L
Sbjct: 203 LLQVSSRLH 211
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+++ A IKV D + D I+ +S KE E P+SP +DA VR+ R S + + S
Sbjct: 307 QESGAFIKV-DSSSAEDDCIITVSAKEFFEDPISPTIDATVRLQPRCSEKTDPE-----S 360
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G + RLLV +++ LIGK GS+I I+ S A++R+LS + P +EDE +V++
Sbjct: 361 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVASEDEEMVQIS 420
Query: 225 GEAAKVLKALEAVVGHLR-KFLVDQGVLPLFE 255
G+ AL + L+ F +G L F+
Sbjct: 421 GDLDVAKHALVQITTRLKANFFEREGSLSGFQ 452
>gi|356529691|ref|XP_003533422.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 611
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 156/347 (44%), Gaps = 48/347 (13%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIVLISGKEEPEAPV 137
VFR++ GS+IG++G +++ T A I + P+S +RIV IS E E+
Sbjct: 292 VFRLLCSNNVAGSVIGKRGAIVRALESKTGASI-IFAAPLSEHAERIVTISAIESLESCN 350
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV---------RLLVPSTQAINLIGKQG 188
SPA DA + VF R+ E+ + G F V RLLV ++ + G +G
Sbjct: 351 SPAQDAVILVFARI---IEDHI-----GKGFLQVSSMESPVTARLLVATSTVNSWSGNEG 402
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
+I ++E +GA +++L + P ++D+ +V++ GE V AL + +R L
Sbjct: 403 QVILELREVTGADIQILHGESVPNGASDDDVVVQITGEYRCVQNALYKITSRIRDNL--- 459
Query: 249 GVLPLFEKTYNASISQERQVETW-ADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLE 307
+ N ++++ R W +K + S + + PS R FL R +
Sbjct: 460 --------SPNEAVTEARPKSNWKVNKDPVKGKPFSRGKSAF-PSGR----FLPRNAGVH 506
Query: 308 SRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGV----GGT 363
+ L Q+ L T S L R G + +T T + I +E + G G
Sbjct: 507 AETIL-------QNGELHTDLSENLERGRGNMFATVTNTT-VEIIVSEHVFGSVYGEDGG 558
Query: 364 SIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+++ IR+ SGA +TV + V I GT Q AQ L+Q ++
Sbjct: 559 NLDRIRQISGATVTVYDPSVGTSGGKVVISGTPDQTLAAQSLLQAFI 605
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 14/174 (8%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEP- 133
PG FR++ VG +IG G ++ + +T +I D S+ DR++L+ G P
Sbjct: 47 PGQIAFRLVCHASIVGGLIGSSGSIVSQLRRETACKIHCEDSLSSAEDRVILVIGSVSPR 106
Query: 134 ---------EAPVSPAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINL 183
E VS A +A VRVF+RV GL E V++ + + +LL ++Q +
Sbjct: 107 KGLQLGDGGEVEVSSAQEAIVRVFERVWGLEAEKGVNSNRAVNSEVFSKLLAHTSQIGAV 166
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+GK G I +I+ ++GA +RV P T+DE +V + G V KAL +V
Sbjct: 167 VGKGGKNITAIRNSTGAKIRVC---PPPQCATKDEELVLITGGILAVKKALISV 217
>gi|388511497|gb|AFK43810.1| unknown [Lotus japonicus]
Length = 279
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 10/179 (5%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++ P +G +IG+ G +I + +D+ A IKV D ++ IS KE + SP
Sbjct: 17 RVVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIAISTKEFFDDSFSPT 76
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
++AAVR+ R S E D SG + RLLVPS++ LIGK G++I ++ + A
Sbjct: 77 IEAAVRLQPRCSDKVERD-----SGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKA 131
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ-----GVLPLF 254
++R+L ++ P +ED+ +V++ G+ AL V+ L+ L D+ G LP+
Sbjct: 132 NIRILPKEDLPKIASEDDEMVQISGDLDVAKDALVQVLTRLKANLFDKERAVPGFLPVM 190
>gi|307136423|gb|ADN34230.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 331
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
Query: 49 ESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTR 108
E D + S D +A + K +FR++VP ++G +IG+ G I+K E+T+
Sbjct: 44 EDDLIVSNSDASDVSAPKRQAK----AHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETK 99
Query: 109 ARIKVLDGPVSSPDRIVLISGKEEPEA--PVSPAMDAAVRVFKRVSGLPENDVDAKASGA 166
A IK+ D +R+++IS K+ + A+ + + G ++
Sbjct: 100 ATIKIADAVARYEERVIIISSKDNENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHV 159
Query: 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVT--EDERIVEMQ 224
A ++RLL+ +QA +LIG G I+ ++ +SGAS+ +L+ ++ P + E +R+V++
Sbjct: 160 AANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQIS 219
Query: 225 GEAAKVLKALEAVVGHLRK 243
G+ VLKALE + LRK
Sbjct: 220 GDILAVLKALEEIGNQLRK 238
>gi|449493846|ref|XP_002188887.2| PREDICTED: poly(rC)-binding protein 3-like [Taeniopygia guttata]
Length = 352
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 157/335 (46%), Gaps = 29/335 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 19 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--TCPERIVTITGPT-------- 68
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D++A + ++ S +RL+VP++Q +LIGK GS IK I
Sbjct: 69 --DAIFKAFSMIALKFEEDINASMTNSSVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 127 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 182
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAIST-EYTPSTRRESLFLEREPQLESRYRLS 313
K +A I + AD A + ++ + P+ + + P L ++L+
Sbjct: 183 PKPASAPIIFAGG-QVRADTILASAGNHTVLAQPQPAPAFTIQGQYAIPHPDLTKLHQLA 241
Query: 314 GISIYGQDPALSTIRSSALGRASGPIVTQI-TQTMQIPISYAEDIIGVGGTSIENIRRTS 372
Q P + + + G T + + IP IIG G+ I IR+ S
Sbjct: 242 -----MQHPPFTPLGQTTPGFPGLDATTPTSSHELTIPNDLIGCIIGRQGSKINEIRQMS 296
Query: 373 GAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
GA I + + E V I G+ + + LAQ LI
Sbjct: 297 GAQIKIANATEGSAERQVTITGSPANISLAQYLIN 331
>gi|357445989|ref|XP_003593272.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482320|gb|AES63523.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
Length = 766
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 10/247 (4%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
F++I ++G +IG+ G +I+ +T A + V DR++ I+ E PE+ SP
Sbjct: 333 FKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASESPESRYSP 392
Query: 140 AMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A A V VF R V E +D+ + + + +L+V S Q L+GK G ++ +++ +
Sbjct: 393 AQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGKGGVIVSEMRKAT 452
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV-----DQGVLPL 253
GAS+R++ D+ ++++++V++ GE + V AL G LR L G L
Sbjct: 453 GASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLFGGTLKSAGTRSL 512
Query: 254 FEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLS 313
+ S + +SSL A T + + P + SL + P + RL
Sbjct: 513 SSVQSDTSPYGRLRDVPLGSQSSLRADTNAFVRLRDVPLVGQSSLQADTSPYV----RLR 568
Query: 314 GISIYGQ 320
+S+ GQ
Sbjct: 569 DVSLGGQ 575
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 16/191 (8%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P ++ P GH FR++ ++G +IG+ G +IK T A+I++ D P SPDR++
Sbjct: 36 PPQQPLPIPAGHVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVI 95
Query: 126 LISGKEEPEAP--------------VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
++ G + VS A +A +RVF R+ + +++ G S
Sbjct: 96 MVIGASNIDGKVMVRSHSGDGEAIEVSKAQEALLRVFDRILEVAA-EMEGIELGDRTVSC 154
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVL 231
RL+ S QA ++IGK G +++ I++++G + V D P ++ + ++E++G + V
Sbjct: 155 RLVADSAQAGSVIGKGGKVVEKIKKDTGCKIWVCK-DNLPACISSPDEVIEIEGSVSSVK 213
Query: 232 KALEAVVGHLR 242
KAL AV +L+
Sbjct: 214 KALVAVSRNLQ 224
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 325 STIRSSALGRASG---PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES 381
ST R L SG IVT T + +P + G G+++ +R+ SGA + + E
Sbjct: 673 STSRKGGLELVSGSKSAIVTNTTIEIVVPEDTLYLVYGENGSNLARLRQISGAKVVIHEP 732
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
R + T+ + G+ + Q AQ L+Q ++ N
Sbjct: 733 RPGTSDRTIVLSGSPDETQAAQSLLQAFILN 763
>gi|357112139|ref|XP_003557867.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 542
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 7/184 (3%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P + + P V+R + K+GSIIGR GE+ K+ DT+A+I++ + +R++
Sbjct: 28 PGDDTYAPGPDDTVYRYLCTSRKIGSIIGRGGEIAKQLRTDTQAKIRIGESVPGCDERVI 87
Query: 126 LISGK-------EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPST 178
I E+ E V PA DA RV +++ + G A +VRLLVPS
Sbjct: 88 TIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLIADDGPGDEENEEGLAQVTVRLLVPSD 147
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
Q +IGK G +I+ I+ ++G+ +RVLS + P + ++++ G+ V KAL V
Sbjct: 148 QIGCIIGKGGHIIQGIRSDTGSQIRVLSNERLPACGISGDELLQISGDPLVVRKALLQVS 207
Query: 239 GHLR 242
L
Sbjct: 208 SRLH 211
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 12/167 (7%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+++ A IKV D + D I+ +S KE E PVSP +DA VR+ + S + + S
Sbjct: 307 QESGAFIKV-DSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPKCSEKTDPE-----S 360
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G + RLLV ++Q LIGK GS+I I+ S A++R+LS + P +EDE +V++
Sbjct: 361 GEPSYTTRLLVSTSQIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVASEDEEMVQIS 420
Query: 225 GEAAKVLKALEAVVGHLR-KFLVDQGVLPLFEKT--YN---ASISQE 265
G+ AL + L+ F +G L F+ Y+ ASIS E
Sbjct: 421 GDLEVARHALVQITTRLKANFFEREGALSGFQPVIPYHPMPASISDE 467
>gi|355560220|gb|EHH16906.1| hypothetical protein EGK_13160 [Macaca mulatta]
Length = 361
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 43/355 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPS----------TRRESLFL 300
K + + Q R A ++L Q YT T+ L +
Sbjct: 180 PKPASTPVIFAGGQVRADPLAASTANLSLLLQHPPLPAYTIQGQYAIPHPDLTKLHQLAM 239
Query: 301 EREP-----QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAE 355
++ P Q + + ++ + A + + S+ AS P T + IP
Sbjct: 240 QQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIG 296
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
IIG GT I IR+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 297 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 351
>gi|395851184|ref|XP_003798146.1| PREDICTED: poly(rC)-binding protein 3 [Otolemur garnettii]
Length = 361
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 43/355 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIVNSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPS----------TRRESLFL 300
K + + Q R A ++L Q YT T+ L +
Sbjct: 180 PKPASTPVIFAGGQVRADPLAASTANLSLLLQHPPLPAYTIQGQYAIPHPDLTKLHQLAM 239
Query: 301 EREP-----QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAE 355
++ P Q + + ++ + A + + S+ AS P T + IP
Sbjct: 240 QQTPFPPLGQANPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIG 296
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
IIG GT I IR+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 297 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 351
>gi|413953981|gb|AFW86630.1| hypothetical protein ZEAMMB73_253509 [Zea mays]
Length = 667
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 152/343 (44%), Gaps = 39/343 (11%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+FR++ P KV +++ +++ D +++ D S +R+V+I+ +E P+ +
Sbjct: 343 IFRILCPNDKVDNLVATNDGILEMLQADVGVDVRLSDIIAGSDERVVIITSREGPDHELF 402
Query: 139 PAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PA +A + + + L P+ D + RLLVPS++ G++GSL IQ
Sbjct: 403 PAQEAVLHIQTHIVDLGPDKD--------NIITTRLLVPSSEIACFDGREGSL-SDIQRQ 453
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ--GVLPLFE 255
+ A+V++L ++ P E + ++++ GE + AL V LR FL + G + +
Sbjct: 454 TSANVQILPKEDLPLCALESDELIQIVGEISAARNALIQVTTKLRSFLYREMSGPIQVGN 513
Query: 256 KTYNASISQER------QVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESR 309
+ +IS + S+ H A+Q A S S S ++ +
Sbjct: 514 INVHGAISPVAGSPGGPNLGNDMPMSAYHQASQLATSWHSKDSGGSASGSFDQGSNI--- 570
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ IR A R + P+VT+ T + IP S + G+ + I
Sbjct: 571 --------------IDEIRQGATKRFAVPLVTRSTLEVVIPNSAVASLTMRAGSKLAQIS 616
Query: 370 RTSGAIITVQESRGLPD--EITVEIKGTSSQVQLAQQLIQEYM 410
SGA +T+ E R PD E V I GT Q A+ L+Q ++
Sbjct: 617 EISGATVTLAEDR--PDILEKVVRISGTPEQASKAENLLQGFI 657
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAA 228
+ RL+VP L+GK G +I+ ++ + +R+L D+ P V+ E +V++ G+
Sbjct: 192 TTRLIVPKMHVGCLLGKGGKIIEQMRMETKTHIRILPRDQHTPRCVSLSEEVVQVVGDGN 251
Query: 229 KVLKALEAVVGHLRKFL 245
V KA+ + L++ L
Sbjct: 252 CVKKAVAIITDRLKESL 268
>gi|387915508|gb|AFK11363.1| alphaCP-3 [Callorhinchus milii]
Length = 349
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 162/347 (46%), Gaps = 39/347 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D++ + + S +RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAFKFEEDINNSMTNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGMPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNA-SISQERQVETWADKSSL-HAATQSAISTEYTPSTRRESLFLEREPQL------ 306
K +A I Q T + ++ H +S EY + + L R PQL
Sbjct: 180 PKPASAPVIFAGGQAYTIQGQCAIPHPDDACLLSAEYKTAL---TSTLWRSPQLAHPSSQ 236
Query: 307 --ESRYRLSGISIYGQ-DPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGT 363
E+ +R S+ G+ + S G + P + T + IP IIG GT
Sbjct: 237 LKEAAWRPE--SLRGKMELKNCNEESENWGMDANPQAS--THELTIPNDLIGCIIGRQGT 292
Query: 364 SIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I IR+ SGA I + + E + I G+ + + LAQ LI +
Sbjct: 293 KINEIRQMSGAQIKIANATEGSTERQITITGSPANISLAQYLINARL 339
>gi|348507477|ref|XP_003441282.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 434
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 157/352 (44%), Gaps = 61/352 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G SSP+RIV I+G E
Sbjct: 19 LRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SSPERIVTITGPTE------- 69
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
R F ++ E D+ A + + S +RL+ P +Q +LIGK GS IK I
Sbjct: 70 ---GIFRAFSMIAQKFEEDITAAMTNSNVTSKPPVTLRLVFPGSQCGSLIGKGGSKIKEI 126
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ----GV 250
+E +GA V+V + D P ER V + G +A+ V H+ +++
Sbjct: 127 RETTGAQVQV-AGDMLP---DSTERAVTISGTP----QAITQCVRHICSVMLESPPKGAT 178
Query: 251 LPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPS----TRRESLFLEREPQL 306
+P K A T A + H+A AI +Y + T+ L ++ P
Sbjct: 179 IPYRPKVIPAG--------THAVLAPQHSAQAFAIPGQYAFAHQDLTKLHQLAMQHIP-- 228
Query: 307 ESRYRLSGISIYGQ-DPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSI 365
+ GQ +P + +SA +Q + IP + IIG G+ I
Sbjct: 229 --------LPSLGQSNPTFPGLDASA---------PTSSQELAIPNDFIGCIIGRQGSKI 271
Query: 366 ENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
IR+ SGA I + + V I G+ + + +AQ LI + K ++
Sbjct: 272 NEIRQVSGAHIKIASATDGSAMRQVTITGSPASISVAQYLINASLEMAKYTM 323
>gi|380798665|gb|AFE71208.1| poly(rC)-binding protein 3 isoform 1, partial [Macaca mulatta]
Length = 370
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 37/341 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 47 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP--------- 95
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 96 -TDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 154
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 155 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 210
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI T+ L +++ P Q
Sbjct: 211 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 262
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 263 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 319
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 320 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 360
>gi|356496890|ref|XP_003517298.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 602
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 150/346 (43%), Gaps = 46/346 (13%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIVLISGKEEPEAPV 137
VFR++ GS+IG++G +++ T A I + P+S +RIV IS E E+
Sbjct: 283 VFRLLCSNNVAGSVIGKRGAIVRALESKTGASI-IFAAPLSEHAERIVTISAVESLESCN 341
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV---------RLLVPSTQAINLIGKQG 188
SPA DA + VF R+ E+ + G F V RLLV ++ G +G
Sbjct: 342 SPAQDAVILVFARI---IEDHI-----GKGFLQVSSMESPVTARLLVATSTVNCFSGNEG 393
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
+I ++E +GA +++L + P ++++ +V++ GE V AL + +R L
Sbjct: 394 QVISELREVTGADIQILHGESVPNGASDEDVVVQITGEYRCVQNALYKITSRIRDNL--- 450
Query: 249 GVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLES 308
+ N +++ R W A PS R FL R + +
Sbjct: 451 --------SPNEVVAEARPKSNWKVNKDPIKGKPFARGKSAFPSGR----FLPRNAGVHA 498
Query: 309 RYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGV----GGTS 364
L Q+ L T S L R G + +T T + I +E + G G +
Sbjct: 499 ETIL-------QNGELHTDLSENLERGRGNMFATVTNTT-VEIIVSEHVFGSVYGEDGGN 550
Query: 365 IENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
++ IR+ SGAI+TV + V I GT Q AQ L+Q ++
Sbjct: 551 LDRIRQISGAIVTVYDPSVGTSGGKVVISGTPDQTFAAQSLLQAFI 596
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 18/177 (10%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEP 133
PG FR++ VG +IG G ++ + +T +I D S+ DR++L+ G P
Sbjct: 37 LPGQIAFRLVCHASTVGGLIGSSGSIVSQLRRETGCKIHCEDSLSSAEDRVILVIGSLSP 96
Query: 134 ----------EAPVSPAMDAAVRVFKRVSGL-PENDVDAK--ASGAAFCSVRLLVPSTQA 180
E VS A +A VRVF+RV L E V++ +G F +LL ++Q
Sbjct: 97 RKGLLLGDGGEVEVSSAQEAVVRVFERVWDLEAEKGVNSNRAVNGEVFS--KLLAHTSQI 154
Query: 181 INLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
++GK G I +I+ N+GA +RV P T+DE +V++ G V KAL +V
Sbjct: 155 GAVVGKGGKNITAIRNNTGAKIRVFP---PPQCATKDEELVQITGGILAVKKALISV 208
>gi|56566054|gb|AAV98363.1| poly(rC) binding protein 3 [Homo sapiens]
Length = 361
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 43/355 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPS----------TRRESLFL 300
K + + Q R A ++L Q YT T+ L +
Sbjct: 180 PKPASTPVIFAGGQVRADPLAASTANLSLLLQHPPLPAYTIQGQYAIPHPDLTKLHQLAM 239
Query: 301 EREP-----QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAE 355
++ P Q + + ++ + A + + S+ AS P T + IP
Sbjct: 240 QQTPLPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIG 296
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
IIG GT I IR+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 297 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 351
>gi|194306631|ref|NP_065389.2| poly(rC)-binding protein 3 isoform 1 [Homo sapiens]
gi|296439262|sp|P57721.2|PCBP3_HUMAN RecName: Full=Poly(rC)-binding protein 3; AltName: Full=Alpha-CP3
gi|119629729|gb|EAX09324.1| poly(rC) binding protein 3, isoform CRA_b [Homo sapiens]
Length = 371
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 37/341 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 95
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 96 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI T+ L +++ P Q
Sbjct: 212 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 263
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 264 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 320
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 321 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 361
>gi|332872312|ref|XP_001157899.2| PREDICTED: poly(rC)-binding protein 3 isoform 8 [Pan troglodytes]
gi|397506692|ref|XP_003823855.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Pan paniscus]
gi|426393341|ref|XP_004062983.1| PREDICTED: poly(rC)-binding protein 3 [Gorilla gorilla gorilla]
Length = 371
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 37/341 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI T+ L +++ P Q
Sbjct: 212 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 263
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 264 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 320
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 321 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 361
>gi|440894425|gb|ELR46887.1| Poly(rC)-binding protein 3 [Bos grunniens mutus]
Length = 374
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 37/341 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 51 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 100
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 101 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 158
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 159 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 214
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI T+ L +++ P Q
Sbjct: 215 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 266
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 267 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 323
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 324 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 364
>gi|171906586|ref|NP_067543.2| poly(rC)-binding protein 3 [Mus musculus]
gi|296439279|sp|P57722.3|PCBP3_MOUSE RecName: Full=Poly(rC)-binding protein 3; AltName: Full=Alpha-CP3
gi|26348076|dbj|BAC37686.1| unnamed protein product [Mus musculus]
gi|148699881|gb|EDL31828.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699882|gb|EDL31829.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699883|gb|EDL31830.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699888|gb|EDL31835.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
Length = 371
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 37/341 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI T+ L +++ P Q
Sbjct: 212 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 263
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 264 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 320
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 321 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 361
>gi|326922311|ref|XP_003207393.1| PREDICTED: poly(rC)-binding protein 3-like [Meleagris gallopavo]
Length = 313
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 148/336 (44%), Gaps = 53/336 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ S + S +RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + QG +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAI- 178
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
D + LH T +TP + F + L S
Sbjct: 179 ---------------PHPDLTKLHQLAMQ--QTPFTPLGQTTPAFPGEKLPLHSSEEAQ- 220
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
++ GQ L AS P T + IP IIG GT I IR+ SGA
Sbjct: 221 -NLMGQSSGLD---------ASPPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGA 267
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I + + E + I GT + + LAQ LI +
Sbjct: 268 QIKIANATEGSSERQITITGTPANISLAQYLINARL 303
>gi|242078463|ref|XP_002444000.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
gi|241940350|gb|EES13495.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
Length = 629
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 166/353 (47%), Gaps = 44/353 (12%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE 131
P G FR++ P K+G +IGR G IK +++ ARI V D + I+ I+ E
Sbjct: 304 PKCSGELEFRVLCPSGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDREESIITITSTE 363
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ S A++A + + +++ ++ ++ +RLLVP+ LIG+ GS++
Sbjct: 364 AIDDVKSAAVEAVLLLQAKINDYEDDRMN----------LRLLVPNKVIGCLIGRGGSIV 413
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
+++ + A++ ++S + P + + +VE+ GEA K+ AL ++ LR+ ++ + V
Sbjct: 414 NDMRKKTKANI-LISKGDKPRRASSSDELVEVSGEADKLRDALVQIILRLREDVLKESV- 471
Query: 252 PLFEKTYNASISQERQVET----WADKSSL-----HAATQSAISTEYTPSTRRESLFLER 302
++ N+ + V T + SL H + +S + + R LE
Sbjct: 472 ----ESQNSDRDGKLTVATSDSLYGSSLSLPALLPHNPQIAPLSYDRRGESERA---LEV 524
Query: 303 EPQLESRYRLSGISI----YGQDPAL-STIRSSALGRASGPIVTQITQTMQIPISYAEDI 357
P+ S Y S + + YG P+ S L R M IP S +
Sbjct: 525 FPRTSS-YGYSSMQVTDDGYGGLPSYTSKAYEEHLPR----------DEMTIPASGLSKV 573
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+G GT+++NIR+ SGA I + ES+ + I GTS Q Q A+ LI+ ++
Sbjct: 574 MGKRGTNLDNIRKISGAHIEIIESKSSRHDHIAYISGTSEQRQSAENLIKAFI 626
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 23/189 (12%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P ++ G ++R++ P +GS+IG+ G +I + T A++KV+D + R++
Sbjct: 29 PHAQESSNNDGLVLYRILCPDSLIGSVIGKNGNVINAIRQQTSAKVKVVDPYPGADKRVI 88
Query: 126 LI---------SGKEEPEAPVSPAMDAAVRVFKR-VSGLPEN--DVDAKASGAAFCSVRL 173
L+ + + PV A DA +RV V L N D D K + A +
Sbjct: 89 LVYCYVKHRDLDAEVDDNEPVCAAQDALLRVHNAIVDTLHRNRRDSDKKNTEEA----NI 144
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTED-----ERIVEMQGEAA 228
LVP++QA N+IGK G++IK ++ S A ++V D P T + V++ G A
Sbjct: 145 LVPASQASNVIGKSGAVIKHLRSTSRAFIKVSPKD--PSDATHSCAMSFDNFVQITGGAE 202
Query: 229 KVLKALEAV 237
V KAL V
Sbjct: 203 AVKKALFGV 211
>gi|354476790|ref|XP_003500606.1| PREDICTED: poly(rC)-binding protein 3 [Cricetulus griseus]
gi|149043674|gb|EDL97125.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043675|gb|EDL97126.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043676|gb|EDL97127.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043677|gb|EDL97128.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|344241934|gb|EGV98037.1| Poly(rC)-binding protein 3 [Cricetulus griseus]
Length = 371
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 37/341 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI T+ L +++ P Q
Sbjct: 212 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 263
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 264 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 320
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 321 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 361
>gi|255541092|ref|XP_002511610.1| conserved hypothetical protein [Ricinus communis]
gi|223548790|gb|EEF50279.1| conserved hypothetical protein [Ricinus communis]
Length = 363
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 105/173 (60%), Gaps = 11/173 (6%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+FR++VP ++G +IG+ G I+K E+T+A IK+ D +R+++IS KE + VS
Sbjct: 72 IFRIVVPSRQIGKVIGKVGCRIQKIREETKATIKIADAIARHEERVIIISSKES-DCVVS 130
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKAS---GAAFC---SVRLLVPSTQAINLIGKQGSLIK 192
A +A ++ + L E++ A++S GA ++RLL+ +QA +LIG G I+
Sbjct: 131 DAENALKKIATLI--LKEDESPAESSKVVGAGHLGANTIRLLIAGSQAGSLIGVSGQNIE 188
Query: 193 SIQENSGASVRVLSADEAPFYVT--EDERIVEMQGEAAKVLKALEAVVGHLRK 243
++ +SGA++ VL+ ++ P + E +R+V++ G+ VLKA+E + LR+
Sbjct: 189 KLRNSSGATITVLAPNQLPLCASAHESDRVVQISGDVPVVLKAVEEIGCQLRE 241
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
+T M + + +IG G++I IR SGA+I V +G ++ GT+ QV LA
Sbjct: 274 VTLEMMVSETLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEKKHRHIQFGGTAQQVALA 333
Query: 403 QQLIQEYM 410
+Q + EY+
Sbjct: 334 KQRVDEYI 341
>gi|449456987|ref|XP_004146230.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
gi|449517605|ref|XP_004165836.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 666
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 106/403 (26%), Positives = 176/403 (43%), Gaps = 24/403 (5%)
Query: 15 PEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGW 74
PE D P A P P + + NT S P AA V + P +
Sbjct: 273 PEDDYVPHNAR-RLPMDGRPFRPRMSASNTRGNDYSSRQSNFMVEPGAAPV-NDNMMPFY 330
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
VF+++ P+ KV S+IG +I+ D IKV D S ++I++IS E P+
Sbjct: 331 GEDLVFKILCPIEKVDSVIGESNGIIELLRNDVGVDIKVSDPVTGSNEQILIISSDEGPD 390
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ PA +A + + R+ VD + RLLVPS+ L G+ GSL++ +
Sbjct: 391 DELFPAQEALLHIQTRI-------VDLVPDKENIVTTRLLVPSSDIGCLEGRDGSLLE-M 442
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+ +GA+V ++ ++ P +V+ + +V++ G+ AL + LR L + F
Sbjct: 443 KRLTGANVHIVPREDLPMFVSGADELVQIIGDIKAARDALVELTSRLRNCLYKEP----F 498
Query: 255 EKTYNASIS-QERQVETWADKSSL--HAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
+K + +S Q V ++SS +AA + S + ST +++ QL +
Sbjct: 499 QKDASPQVSVQSTMVSLGLEESSSNNNAAAREVHSGNDSASTAFQNVQPFGTAQL---LK 555
Query: 312 LSGISIYGQDPALSTIRS----SALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIEN 367
+G S R S L R P+VT+ T + IP +I +
Sbjct: 556 ETGGSSNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAVPKLITKSKNKLAQ 615
Query: 368 IRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I SGA +T+ E R + ++I GT Q + AQ L+Q ++
Sbjct: 616 ISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFI 658
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 26/190 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG--KEEPEAPV 137
+R++ K G +IG+ G +IK + T A I V + +RI+ IS + +PE +
Sbjct: 62 YRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRM 121
Query: 138 ---SPAMDAAVRVFKRV---------SGL---PENDVD--------AKASGAAFCSVRLL 174
SPA +A + +R+ +G+ PE++ D + RL+
Sbjct: 122 PSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGGGGGCGGRVATRLV 181
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKA 233
V L+GK G +I+ ++ + +R+L D P ++ E IV++ G+ V KA
Sbjct: 182 VSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDTNAVKKA 241
Query: 234 LEAVVGHLRK 243
+ V LR+
Sbjct: 242 IAIVSSRLRE 251
>gi|147807333|emb|CAN73004.1| hypothetical protein VITISV_044058 [Vitis vinifera]
Length = 122
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 73/115 (63%), Gaps = 7/115 (6%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
MQ+P+SYA+ +IG G +I +RRTSGA I ++E++G+P E+TVEI G+ SQVQ AQQLI
Sbjct: 1 MQVPLSYADAVIGASGVNISYVRRTSGATIAIEETKGVPGEMTVEINGSVSQVQTAQQLI 60
Query: 407 QEYMNNHKES-ITSSYGQIDTGYRPSYPQLG--NSSYPSS---SLSTQPYGGYGS 455
Q +M S + + G I GY P +P G ++S PS+ L G YGS
Sbjct: 61 QNFMAEAASSTLNLAGGAISQGYNP-FPTHGAVSTSQPSNVIEHLGPSAGGSYGS 114
>gi|403297203|ref|XP_003939468.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 371
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 37/341 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI T+ L +++ P Q
Sbjct: 212 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 263
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 264 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 320
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 321 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 361
>gi|297847528|ref|XP_002891645.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297337487|gb|EFH67904.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 622
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
FR++ P KVGS+IG+ G +++ ++ A IKV D S +RI++IS +E E S
Sbjct: 279 FRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERRHSL 338
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A D +RV R+ V+ +A RLLV S L+GK G LI ++ +G
Sbjct: 339 AQDGVMRVHNRI-------VEIGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATG 391
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
AS+RV + D+A Y ++ + IV++ G V AL ++ LR+ +
Sbjct: 392 ASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAM 437
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 46/207 (22%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDG-PVSSPDRIVLI----------- 127
FR++ P + G+IIG+ G +I+ T ++I+V+D PV S +R+VLI
Sbjct: 21 FRLLCPAARTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKDDS 80
Query: 128 ------------------------SGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDA- 161
SG ++ EAP S M A +RV +R V G VD
Sbjct: 81 NVFDSENPSSEEPKQEKGSECAGTSGGDDEEAPSSAQM-ALLRVLERIVFGDDAASVDGD 139
Query: 162 ---KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDE 218
K + C R++V Q L+ K G +I+ I+E+SGA VR+ S D+ P +
Sbjct: 140 GLDKGESESLC--RMIVRGNQVDFLMSKGGKMIQRIREDSGAIVRISSTDQIPPCAFPGD 197
Query: 219 RIVEMQ--GEAAKVLKALEAVVGHLRK 243
+++M+ G+ + V KAL + L++
Sbjct: 198 VVIQMKITGKFSSVKKALLLITNCLQE 224
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 326 TIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLP 385
+R+ +G + P +T + IP +Y + G +++ I++ SGA + V + +
Sbjct: 534 ALRNEPIG-SENPAMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGA 592
Query: 386 DEITVEIKGTSSQVQLAQQLIQEYM 410
E V + GTS Q AQ L+ ++
Sbjct: 593 TEGLVVVSGTSDQAHFAQSLLHAFI 617
>gi|224141139|ref|XP_002323932.1| predicted protein [Populus trichocarpa]
gi|222866934|gb|EEF04065.1| predicted protein [Populus trichocarpa]
Length = 722
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 18/188 (9%)
Query: 60 PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS 119
P A+A P P GH FR++ ++G +IG+ G +IK + T A++++ D P
Sbjct: 22 PSASAAP----LPVPSGHVSFRLLCHASRIGGVIGKAGNIIKGLQQQTGAKVRIEDAPSD 77
Query: 120 SPDRIVLISG----------KEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFC 169
SPDR++ + G + E VS +A VRVF+R+ + + D+ A G C
Sbjct: 78 SPDRVITVIGPITQSAVVFSRIESAVEVSKGQEALVRVFERILEV-AAESDSVADGVVSC 136
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
R+L + +IGK G +++ I+++ G ++VL D+ P +E ++E++G+ +
Sbjct: 137 --RMLAEVSSVGAVIGKGGKVVEKIRKDCGCRIKVL-VDKLPDCAASNEEMIEIEGDVSA 193
Query: 230 VLKALEAV 237
V K L AV
Sbjct: 194 VKKGLVAV 201
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 102/196 (52%), Gaps = 9/196 (4%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS--PDRIVLISGKEE 132
P VFR++ ++G +IG+ G +++ +T A I V GP S +R++ ++ E
Sbjct: 297 PQQLVFRILCTTDRIGGVIGKGGNIVRALQNETGAAISV--GPTVSECDERLITVTASEN 354
Query: 133 PEAPVSPAMDAAVRVFKRV--SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
PE+ S A V VF R SG+ E +D +S + + RL+V +Q L+GK G++
Sbjct: 355 PESRYSAAQKTIVLVFSRAVESGI-EKGLDPGSSRGSPVTARLVVSPSQVGCLLGKGGTI 413
Query: 191 IKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
I +++ + S+R++ D+ P V E + +VE+ G+ V A+ V G LR L G
Sbjct: 414 ISEMRKATSTSIRIIVGDQRNPKCVPETDHVVEISGDFVNVKDAIYHVTGRLRDNLF-SG 472
Query: 250 VLPLFEKTYNASISQE 265
+L N+S+ E
Sbjct: 473 MLSTPGARSNSSVLAE 488
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 339 IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR-GLPDEITVEIKGTSS 397
VT T + +P + + G G+++ +R+ SGA + V E R G D I V I GT
Sbjct: 646 FVTNTTVEIVVPENAFGSVYGENGSNLARLRQISGAKVIVHEPRLGTSDRIVV-ISGTPD 704
Query: 398 QVQLAQQLIQEYM 410
+ Q AQ L+Q ++
Sbjct: 705 ETQAAQSLLQAFI 717
>gi|356509231|ref|XP_003523354.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 644
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 169/378 (44%), Gaps = 31/378 (8%)
Query: 43 NTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGH-CVFRMIVPVLKVGSIIGRKGELIK 101
NT + +L + P AA V ++ + G+ G VFR++ P+ KV IIG +++
Sbjct: 290 NTNSRNNNHPSLNYAMEPGAAPVVDDAQ--GFYGEELVFRILCPIEKVDRIIGESEGIVE 347
Query: 102 KTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA 161
+ +KV D S ++I++I+ +E P+ + PA +A + V R+ VD
Sbjct: 348 FLQNEVGVDVKVTDPVGGSDEQIIIITSEEGPDDELFPAQEALLHVQTRI-------VDL 400
Query: 162 KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ RL+VPS++ L GK SL I+ +GA++++L DE P V + + +V
Sbjct: 401 VLDKDNTITTRLVVPSSEIECLDGKDVSL-SEIRRLTGANIQILPRDELPLCVAKTDELV 459
Query: 222 EMQGEAAKVLKALEAVVGHLRKFL----VDQGVLPLFEKTYNASISQERQVETWADKSSL 277
++ GE A+ V LR +L + +PL A+ S + + +
Sbjct: 460 QIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDTVPLPAPLPGAAASSSNNIVPVTETPTT 519
Query: 278 HAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASG 337
+ Q+ + PS E Q ES R D L S L R +
Sbjct: 520 YQNLQTVAAA--LPSKETGGSSTETGKQKESDRR---------DDLL-----SGLNRIAV 563
Query: 338 PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSS 397
P+VT+ T + +P ++ + + I SGA +T+ E R + ++I GT
Sbjct: 564 PLVTRSTLEVVLPEYAVPKLVAKSKSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPE 623
Query: 398 QVQLAQQLIQEYMNNHKE 415
Q + AQ L+Q ++ + +E
Sbjct: 624 QAERAQSLLQGFILSTQE 641
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 134/341 (39%), Gaps = 68/341 (19%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG--KEEPEAPV 137
+R++ LK G +IG+ G +IK + T A I V + +RI+ IS + +PE +
Sbjct: 63 YRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRM 122
Query: 138 ---SPAMDAAVRVFKRVSGLPENDVDAKASGAA--------------FCSVRLLVPSTQA 180
SPA +A + + +R+ E+D A G A + RL+V
Sbjct: 123 PSFSPAQEALLLIHERIL---ESDA---AFGVAEEDEEYGGRGGGRDRIATRLVVSRMHV 176
Query: 181 INLIGKQGSLIKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKALEAVVG 239
L+GK G +I+ ++ + +R+L D P V+ E IV++ G V AL +
Sbjct: 177 GCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGNVNAVKNALVIISS 236
Query: 240 HLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQS-----AISTEYTPS-- 292
LR+ SQ R D+S H S + +Y P
Sbjct: 237 RLRE-------------------SQHR------DRSHFHGRVHSPERFFSPDDDYVPHVT 271
Query: 293 --TRRESL----FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQT 346
+RR S+ F R SR Y +P + + A G +V +I
Sbjct: 272 SGSRRSSVDGASFGSRGSNTNSRNNNHPSLNYAMEPGAAPVVDDAQGFYGEELVFRIL-- 329
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDE 387
PI + IIG +E ++ G + V + G DE
Sbjct: 330 --CPIEKVDRIIGESEGIVEFLQNEVGVDVKVTDPVGGSDE 368
>gi|348554794|ref|XP_003463210.1| PREDICTED: poly(rC)-binding protein 3-like [Cavia porcellus]
Length = 384
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 159/343 (46%), Gaps = 37/343 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 61 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 110
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 111 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 168
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 169 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 224
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI T+ L +++ P Q
Sbjct: 225 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 276
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 277 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 333
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
+ SGA I + + E + I GT + + LAQ LI + +
Sbjct: 334 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTS 376
>gi|338720838|ref|XP_001488421.3| PREDICTED: poly(rC)-binding protein 3 [Equus caballus]
Length = 393
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 43/355 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPS----------TRRESLFL 300
K + + Q R A ++L Q YT T+ L +
Sbjct: 212 PKPASTPVIFAGGQVRADPLAASTANLSLLLQPPPLPAYTIQGQYAIPHPELTKLHQLAM 271
Query: 301 EREP-----QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAE 355
++ P Q + + ++ + A + + S+ AS P T + IP
Sbjct: 272 QQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIG 328
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
IIG GT I IR+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 329 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 383
>gi|363735768|ref|XP_003641607.1| PREDICTED: poly(rC)-binding protein 3-like [Gallus gallus]
gi|449506326|ref|XP_002191682.2| PREDICTED: poly(rC)-binding protein 3 [Taeniopygia guttata]
Length = 339
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 152/346 (43%), Gaps = 47/346 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ S + S +RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLP-- 252
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 253 --------LFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP 304
+F +I + + + LH T +TP + F +
Sbjct: 180 PKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQ--QTPFTPLGQTTPAFPGEKL 237
Query: 305 QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTS 364
L S ++ GQ L AS P T + IP IIG GT
Sbjct: 238 PLHSSEEAQ--NLMGQSSGLD---------ASPPAS---THELTIPNDLIGCIIGRQGTK 283
Query: 365 IENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I IR+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 284 INEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 329
>gi|116784616|gb|ABK23409.1| unknown [Picea sitchensis]
Length = 407
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 5/171 (2%)
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPV 137
VFR++V K+G +IG++G I + EDT ARIK+ D DR+++IS K E E
Sbjct: 93 IVFRIVVASNKIGKVIGKQGSKINQLREDTGARIKIADPVTPLEDRVIIISSKGEEEEET 152
Query: 138 SPAMDAAVRVFKRV---SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
S A A +++ + SG +RLL+ +QA +LIG G IK I
Sbjct: 153 SAAEQALIQIATVILEESGESSATAKVGTRHVGPNMMRLLIAGSQAGSLIGASGKTIKEI 212
Query: 195 QENSGASVRVLSADEAPFY--VTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
+ +SGA++++L + +P +E +R+V++ GE ++VLKAL+ + LR+
Sbjct: 213 RNDSGATIKILPQNLSPICASASETDRLVQISGEVSQVLKALDHIGVTLRE 263
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QESRGLPDEITVEIKGTSSQVQ 400
++T M+IP S A +IG G +I IR SGAI+ V E G I E GT+ QV
Sbjct: 328 KVTVEMKIPSSVAGGVIGKRGDNISQIRSLSGAIVKVIGEKDGATRTIFFE--GTAHQVA 385
Query: 401 LAQQLIQEYMN 411
AQ L+ ++N
Sbjct: 386 TAQNLVNNHIN 396
>gi|147845094|emb|CAN78473.1| hypothetical protein VITISV_026793 [Vitis vinifera]
Length = 709
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
Query: 106 DTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDAKAS 164
+T IKVLDG S DR++ ISG P+ +SPA DA +RV R V +P D+K
Sbjct: 363 ETGCEIKVLDGVPDSEDRVIFISGSAHPDDRISPAQDAVLRVQSRIVRAIP----DSKEK 418
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
RLLV STQ L+GK G++I +++ SGA +R+L D+ P +E+E +V++
Sbjct: 419 TVI---ARLLVSSTQIGCLLGKGGAIIAEMRKLSGAHIRILGKDQIPKCASENEEVVQIN 475
Query: 225 GEAAKVLKALEAVVGHLR 242
GE V +AL + LR
Sbjct: 476 GEFEAVQEALLQITTRLR 493
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 46/209 (22%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE--- 131
PG VFR++ P K GS+IG+ G +I + ++T +++V + +R+VLI+G +
Sbjct: 42 PGTVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDT 101
Query: 132 ------------------------EP-----------------EAPVSPAMDAAVRVFKR 150
EP E +S A + VF+R
Sbjct: 102 EADNEQSKEDGEDTKAAEEVSDTKEPGENDEDKESVPVEDSQVEKGISSVQKALLLVFER 161
Query: 151 VS-GLPE-NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSAD 208
++ G E N D ++ + VRLLV S+Q L+GK GS+IK + SGA +R+L D
Sbjct: 162 MAEGESETNGGDEDSNKSPTFVVRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRD 221
Query: 209 EAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+ P + + +V++ GE +AL+++
Sbjct: 222 KLPLCASPSDELVQITGELDACKQALQSI 250
>gi|194306633|ref|NP_001123613.1| poly(rC)-binding protein 3 isoform 2 [Homo sapiens]
gi|119629728|gb|EAX09323.1| poly(rC) binding protein 3, isoform CRA_a [Homo sapiens]
Length = 345
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 149/336 (44%), Gaps = 53/336 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 95
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 96 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + QG +
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAI- 210
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
D + LH T + P + F + L S
Sbjct: 211 ---------------PHPDLTKLHQLAMQ--QTPFPPLGQTNPAFPGEKLPLHSSEEAQ- 252
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
++ GQ L AS P T + IP IIG GT I IR+ SGA
Sbjct: 253 -NLMGQSSGLD---------ASPPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGA 299
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I + + E + I GT + + LAQ LI +
Sbjct: 300 QIKIANATEGSSERQITITGTPANISLAQYLINARL 335
>gi|432906521|ref|XP_004077571.1| PREDICTED: poly(rC)-binding protein 3-like [Oryzias latipes]
Length = 434
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 152/342 (44%), Gaps = 61/342 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G SSP+RIV I+G E
Sbjct: 19 LRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SSPERIVTITGPTE------- 69
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
R F ++ E D+ A + + S +RL+ P +Q +LIGK GS IK I
Sbjct: 70 ---GIFRAFSMIAQKFEEDITAAMTNSNVTSKPPVTLRLVFPGSQCGSLIGKGGSKIKEI 126
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ----GV 250
+E +GA V+V + D P ER V + G +A+ V H+ +++
Sbjct: 127 RETTGAQVQV-AGDMLP---DSTERAVTISGTP----QAITQCVRHICSVMLESPPKGAT 178
Query: 251 LPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPS----TRRESLFLEREPQL 306
+P K A A + H+A AI +Y + T+ L ++ P
Sbjct: 179 IPYRPKILPAG--------AHAVLAPQHSAHAFAIPGQYAFAHQDLTKLHQLAMQHIP-- 228
Query: 307 ESRYRLSGISIYGQ-DPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSI 365
+ GQ +P + SSA + TQ + IP IIG G+ I
Sbjct: 229 --------LPSLGQSNPTFPGLDSSA---------STSTQELAIPNDLIGCIIGRQGSKI 271
Query: 366 ENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
IR+ SGA I + + V I G+ + + +AQ LI
Sbjct: 272 NEIRQVSGAHIKIASATDGSAVRQVTITGSPASISIAQYLIN 313
>gi|327260862|ref|XP_003215252.1| PREDICTED: poly(rC)-binding protein 3-like [Anolis carolinensis]
Length = 339
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 47/346 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLP-- 252
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 253 --------LFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP 304
+F +I + + + LH T +TP + F +
Sbjct: 180 PKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQ--QTPFTPLGQTTPAFPGEKL 237
Query: 305 QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTS 364
L S ++ GQ L AS P T + IP IIG GT
Sbjct: 238 PLHSSEEAQ--NLMGQSSGLD---------ASPPAS---THELTIPNDLIGCIIGRQGTK 283
Query: 365 IENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I IR+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 284 INEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 329
>gi|9957165|gb|AAG09240.1|AF176329_1 alphaCP-3 [Homo sapiens]
Length = 339
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 37/341 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI T+ L +++ P Q
Sbjct: 180 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 231
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 232 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 288
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 289 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 329
>gi|395536909|ref|XP_003770451.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Sarcophilus
harrisii]
Length = 361
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 160/355 (45%), Gaps = 43/355 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPS----------TRRESLFL 300
K + + Q R A ++L Q YT T+ L +
Sbjct: 180 PKPASTPVIFAGGQVRADPLAASTANLSLLLQHQPLPAYTIQGQYAIPHPDLTKLHQLAM 239
Query: 301 EREP-----QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAE 355
++ P Q + + ++ + A + + S AS P T + IP
Sbjct: 240 QQTPFPPLGQTTPAFPGEKLPLHSSEEAQNLMGQSPGLDASPPAS---THELTIPNDLIG 296
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
IIG GT I IR+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 297 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 351
>gi|296086352|emb|CBI31941.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 12/174 (6%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP-- 136
V+R + PV K+GSIIGR G++ K+ +T++ I++ + +R+V I E P
Sbjct: 110 VYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETNPFG 169
Query: 137 -----VSPAMDAAVRVFKRVSG--LPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGS 189
VSPA DA RV R+ LP D + A +VR+LVPS Q +IGK G
Sbjct: 170 DTGELVSPAQDALFRVHDRIVAGELP---ADEEPEEAQQVTVRMLVPSDQIGCVIGKGGQ 226
Query: 190 LIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
+I++I+ + A +R+L + P + ++++ G+A+ V KAL + L +
Sbjct: 227 VIQNIRSETRAQIRILKDEHLPPCALSSDELLQIIGDASVVRKALHQLASRLHE 280
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+++ A IKV D I+ IS KE E P SP +DAA+R+ R S E + S
Sbjct: 347 QESGASIKVDSSSAEGDDCIIFISAKEFFEDP-SPTIDAALRLQPRCSEKAE-----RES 400
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
+ + RLLVPS++ LIGK G++I ++ + A++R+LS + P +ED+ +V++
Sbjct: 401 SDSVVTTRLLVPSSRIGCLIGKGGAIISEMRSVTRANIRILSKENLPKVASEDDEMVQIT 460
Query: 225 GEAAKVLKALEAVVGHLRKFLVDQ 248
GE AL V L+ L ++
Sbjct: 461 GELNVASNALLQVTLRLKANLFER 484
>gi|115495373|ref|NP_001069752.1| poly(rC)-binding protein 3 [Bos taurus]
gi|301767382|ref|XP_002919105.1| PREDICTED: poly(rC)-binding protein 3-like [Ailuropoda melanoleuca]
gi|359323604|ref|XP_848733.3| PREDICTED: poly(rC)-binding protein 3 [Canis lupus familiaris]
gi|109659150|gb|AAI18167.1| Poly(rC) binding protein 3 [Bos taurus]
gi|296490840|tpg|DAA32953.1| TPA: poly(rC) binding protein 3 [Bos taurus]
Length = 361
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 43/355 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPS----------TRRESLFL 300
K + + Q R A ++L Q YT T+ L +
Sbjct: 180 PKPASTPVIFAGGQVRADPLAASTANLSLLLQPPPLPAYTIQGQYAIPHPDLTKLHQLAM 239
Query: 301 EREP-----QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAE 355
++ P Q + + ++ + A + + S+ AS P T + IP
Sbjct: 240 QQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIG 296
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
IIG GT I IR+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 297 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 351
>gi|148699884|gb|EDL31831.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699885|gb|EDL31832.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699886|gb|EDL31833.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699889|gb|EDL31836.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699890|gb|EDL31837.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|149043678|gb|EDL97129.1| rCG61051, isoform CRA_b [Rattus norvegicus]
gi|149043679|gb|EDL97130.1| rCG61051, isoform CRA_b [Rattus norvegicus]
gi|149043680|gb|EDL97131.1| rCG61051, isoform CRA_b [Rattus norvegicus]
Length = 339
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 37/341 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI T+ L +++ P Q
Sbjct: 180 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 231
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 232 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 288
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 289 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 329
>gi|426218395|ref|XP_004003432.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Ovis aries]
Length = 345
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 149/336 (44%), Gaps = 53/336 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + QG +
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAI- 210
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
D + LH T + P + F + L S
Sbjct: 211 ---------------PHPDLTKLHQLAMQ--QTPFPPLGQTNPAFPGEKLPLHSSEEAQ- 252
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
++ GQ L AS P T + IP IIG GT I IR+ SGA
Sbjct: 253 -NLMGQSSGLD---------ASPPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGA 299
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I + + E + I GT + + LAQ LI +
Sbjct: 300 QIKIANATEGSSERQITITGTPANISLAQYLINARL 335
>gi|195022402|ref|XP_001985568.1| GH14429 [Drosophila grimshawi]
gi|193899050|gb|EDV97916.1| GH14429 [Drosophila grimshawi]
Length = 362
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 139/332 (41%), Gaps = 28/332 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG S
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGT------TSA 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + K+ D G +RL+VP++Q +LIGK GS IK I++N+G
Sbjct: 78 IFAAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQNTG 137
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
S++V S ER V + G A ++ + + + L + E
Sbjct: 138 CSIQVASE----MLPNSTERAVTLSGSAEQITQCIYQI------------CLVMLESPPR 181
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
+ R L I Y T+ S ++ S G
Sbjct: 182 GATIPYRPKPQVTGPVILANGQAFTIQGNYAVPTQEVSKNPLASLAALGLAGMTPASTGG 241
Query: 320 -QDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
AL+ + S L A+ Q M + IIG GGT I IR+ SGA+I +
Sbjct: 242 INHTALAALAGSQLRTANANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRI 301
Query: 379 ---QESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
+E G + T+ I G V LAQ LI
Sbjct: 302 SNCEEREGGNTDRTITISGNPDSVALAQYLIN 333
>gi|356572762|ref|XP_003554535.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 548
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 94/171 (54%), Gaps = 8/171 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-SGKEEPEAP- 136
V+R + P K+GS+IGR GE++K+ +T+A+I++ + +R+V I S +E A
Sbjct: 43 VYRYVCPGRKIGSVIGRGGEIVKQLRVETKAKIRIGETVPGCEERVVTIYSPSDETNAVE 102
Query: 137 -----VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
VSPA DA +V RV + D G + +LLVPS Q +IGK GS++
Sbjct: 103 GGGNYVSPAQDALFKVHDRVVA-EDFHGDQDDDGGQQVTAKLLVPSDQIGCVIGKGGSIV 161
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
++I+ +GA +R+L D P + +V++ G+A+ V KAL + L
Sbjct: 162 QNIRSETGAQIRILKDDHLPLCALSSDELVQITGDASVVKKALCQIASRLH 212
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++ P +G +IG+ G +I + +++ A IKV + ++ IS KE E SP
Sbjct: 286 RLVCPTGNIGGVIGKGGMIINQIRQESGATIKVDSSTTEGDECLIAISTKEFFEETFSPT 345
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
++AAVR+ R S E D SG + RLLVP+++ LIGK GS+I ++ + A
Sbjct: 346 IEAAVRLQPRCSEKVERD-----SGIISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKA 400
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD-QGVLPLF 254
++R++S + P +ED+ +V++ G+ AL V+ LR L D +G L F
Sbjct: 401 NIRIISKENLPKIASEDDEMVQISGDLDIAKDALVHVLTRLRANLFDREGALSSF 455
>gi|255550443|ref|XP_002516272.1| conserved hypothetical protein [Ricinus communis]
gi|223544758|gb|EEF46274.1| conserved hypothetical protein [Ricinus communis]
Length = 79
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 56/76 (73%), Gaps = 3/76 (3%)
Query: 106 DTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS- 164
+TR I ++DGP S DRIVLISGKEEPEA +SPAMDA +RVFK VSGL + DA S
Sbjct: 4 ETRTCICIIDGPPSISDRIVLISGKEEPEATLSPAMDAVLRVFKHVSGLSAGEGDATDSV 63
Query: 165 --GAAFCSVRLLVPST 178
GAAF SVRLLV S+
Sbjct: 64 VAGAAFSSVRLLVASS 79
>gi|30685269|ref|NP_851040.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30685276|ref|NP_197031.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|110737265|dbj|BAF00580.1| hypothetical protein [Arabidopsis thaliana]
gi|110738501|dbj|BAF01176.1| hypothetical protein [Arabidopsis thaliana]
gi|332004758|gb|AED92141.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|332004759|gb|AED92142.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 548
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-------SGKE 131
VFR + PV K+GS+IGR G+++K+ DTR++I++ + +R++ I +
Sbjct: 51 VFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFG 110
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ E +SPA DA R+ RV D+ G + +LLVPS Q ++G+ G ++
Sbjct: 111 DGEKVLSPAQDALFRIHDRVVADDARSEDS-PEGEKQVTAKLLVPSDQIGCILGRGGQIV 169
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
++I+ +GA +R++ P + ++++ GE V KAL + L
Sbjct: 170 QNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRL 219
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 5/170 (2%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
R++ PV + S+IG+ G LI + ++TRA IKV D ++ IS +E E S
Sbjct: 285 FIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYS 344
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
P ++A +R+ + S E D SG + RLLVPS++ ++GK G++I ++ +
Sbjct: 345 PTIEAVMRLQPKCSDKVERD-----SGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMT 399
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
A++R+L + P ++D+ +V++ GE +AL + LR + D+
Sbjct: 400 KANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDR 449
>gi|7671496|emb|CAB89337.1| putative protein [Arabidopsis thaliana]
Length = 568
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 91/172 (52%), Gaps = 8/172 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-------SGKE 131
VFR + PV K+GS+IGR G+++K+ DTR++I++ + +R++ I +
Sbjct: 51 VFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFG 110
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ E +SPA DA R+ RV D+ G + +LLVPS Q ++G+ G ++
Sbjct: 111 DGEKVLSPAQDALFRIHDRVVADDARSEDS-PEGEKQVTAKLLVPSDQIGCILGRGGQIV 169
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
++I+ +GA +R++ P + ++++ GE V KAL + L +
Sbjct: 170 QNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHE 221
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 90/166 (54%), Gaps = 5/166 (3%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
R++ PV + S+IG+ G LI + ++TRA IKV D ++ IS +E E S
Sbjct: 285 FIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYS 344
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
P ++A +R+ + S E D SG + RLLVPS++ ++GK G++I ++ +
Sbjct: 345 PTIEAVMRLQPKCSDKVERD-----SGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMT 399
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
A++R+L + P ++D+ +V++ + +L+ ++ LR F
Sbjct: 400 KANIRILGKENLPKVASDDDEMVQVNFMVLLLKFSLQFLLSRLRYF 445
>gi|344306639|ref|XP_003421993.1| PREDICTED: poly(rC)-binding protein 3 [Loxodonta africana]
Length = 396
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 158/341 (46%), Gaps = 37/341 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 73 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 120
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 121 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 180
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 181 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 236
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI T+ L +++ P Q
Sbjct: 237 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 288
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 289 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 345
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I G+ + + LAQ LI +
Sbjct: 346 QMSGAQIKIANATEGSSERQITITGSPANISLAQYLINARL 386
>gi|359473301|ref|XP_002272287.2| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 517
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 12/174 (6%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP-- 136
V+R + PV K+GSIIGR G++ K+ +T++ I++ + +R+V I E P
Sbjct: 44 VYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETNPFG 103
Query: 137 -----VSPAMDAAVRVFKRVSG--LPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGS 189
VSPA DA RV R+ LP D + A +VR+LVPS Q +IGK G
Sbjct: 104 DTGELVSPAQDALFRVHDRIVAGELP---ADEEPEEAQQVTVRMLVPSDQIGCVIGKGGQ 160
Query: 190 LIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
+I++I+ + A +R+L + P + ++++ G+A+ V KAL + L +
Sbjct: 161 VIQNIRSETRAQIRILKDEHLPPCALSSDELLQIIGDASVVRKALHQLASRLHE 214
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+++ A IKV D I+ IS KE E P SP +DAA+R+ R S E + S
Sbjct: 281 QESGASIKVDSSSAEGDDCIIFISAKEFFEDP-SPTIDAALRLQPRCSEKAE-----RES 334
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
+ + RLLVPS++ LIGK G++I ++ + A++R+LS + P +ED+ +V++
Sbjct: 335 SDSVVTTRLLVPSSRIGCLIGKGGAIISEMRSVTRANIRILSKENLPKVASEDDEMVQIT 394
Query: 225 GEAAKVLKALEAVVGHLRKFLVDQ 248
GE AL V L+ L ++
Sbjct: 395 GELNVASNALLQVTLRLKANLFER 418
>gi|15082311|gb|AAH12061.1| PCBP3 protein [Homo sapiens]
Length = 313
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 149/336 (44%), Gaps = 53/336 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + QG +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAI- 178
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
D + LH T + P + F + L S
Sbjct: 179 ---------------PHPDLTKLHQLAMQ--QTPFPPLGQTNPAFPGEKLPLHSSEEAQ- 220
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
++ GQ L AS P T + IP IIG GT I IR+ SGA
Sbjct: 221 -NLMGQSSGLD---------ASPPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGA 267
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I + + E + I GT + + LAQ LI +
Sbjct: 268 QIKIANATEGSSERQITITGTPANISLAQYLINARL 303
>gi|9957161|gb|AAG09238.1|AF176327_1 alphaCP-3 [Mus musculus]
Length = 339
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 156/341 (45%), Gaps = 37/341 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G + + ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIFQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + +A + Q AI T+ L +++ P Q
Sbjct: 180 PKPACTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 231
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ + ++ + A + + S+ AS P T + IP IIG GT I IR
Sbjct: 232 FPGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 288
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 289 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 329
>gi|410969851|ref|XP_003991405.1| PREDICTED: poly(rC)-binding protein 3 [Felis catus]
Length = 361
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 163/357 (45%), Gaps = 47/357 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPS----------TRRESLFL 300
K + + Q R A ++L Q YT T+ L +
Sbjct: 180 PKPASTPVIFAGGQVRADPLAASTANLSLLLQPPPLPAYTIQGQYAIPHPDLTKLHQLAM 239
Query: 301 EREP-----QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVT--QITQTMQIPISY 353
++ P Q + + ++ + A + +G++SG V+ T + IP
Sbjct: 240 QQTPFPPLGQTNPAFPGEKLPLHSSEEA-----QNLMGQSSGLDVSPPASTHELTIPNDL 294
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
IIG GT I IR+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 295 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 351
>gi|449265657|gb|EMC76819.1| Poly(rC)-binding protein 3 [Columba livia]
Length = 343
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 154/350 (44%), Gaps = 49/350 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G S P+RIV I+G
Sbjct: 19 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGPT-------- 68
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D++A + + S +RL+VP++Q +LIGK GS IK I
Sbjct: 69 --DAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 127 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 182
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K +A I + AD A + + Y + ++ +Y +
Sbjct: 183 PKPASAPIIFAGG-QVRADTILASAGNHTELRLSYLTDLCLNCACCFQAFTIQGQYAIP- 240
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQT-----------------MQIPISYAEDI 357
P L+ + A+ P T + QT + IP I
Sbjct: 241 ------HPDLTKLHQLAMQH---PPFTPLGQTTPGFPGLDATTPTSSHELTIPNDLIGCI 291
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
IG G+ I IR+ SGA I + + E V I G+ + + LAQ LI
Sbjct: 292 IGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLIN 341
>gi|302803919|ref|XP_002983712.1| hypothetical protein SELMODRAFT_445677 [Selaginella moellendorffii]
gi|300148549|gb|EFJ15208.1| hypothetical protein SELMODRAFT_445677 [Selaginella moellendorffii]
Length = 668
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 34/339 (10%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFR++ P K+G+IIG+ I+ E+T A+I V D +R++++S E P+ +S
Sbjct: 348 VFRILCPSEKIGNIIGK---FIQTLQEETGAKINVPDAVPGCEERVIIVSAVESPDDDLS 404
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA +A + ++ D + RLLVPS L+GK G++I ++ ++
Sbjct: 405 PAQEAVFHIQDKLR-------DDGGETSERVVTRLLVPSNHVGCLLGKGGNIISEMRNST 457
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
A +RVL ++ P +++ +V++ GE AL + LR L EKT
Sbjct: 458 RAIIRVLDREQLPLCALDNDEVVQVLGEIRVARDALVQITSRLRANL-------YREKTD 510
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPST----RRESLFLEREPQLESRYRLSG 314
+ ++ + L A+ I +P + + E P+L S +G
Sbjct: 511 RSDDYGYQRSTSPLSNFGLQASQPPGIQAPRSPPSWLLQQTERGAYNGLPRLTS---YAG 567
Query: 315 I----SIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRR 370
I + G AL T G + +VT + IP ++G G ++ I +
Sbjct: 568 IERSYGLAGDRSALPT------GLTNLSVVTSTKIDVLIPEVTFSAVLGQNGDNLTQISK 621
Query: 371 TSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEY 409
SGA +T+ + + +EI GT Q +A+ +++ +
Sbjct: 622 MSGAKVTLADGCTATGDRLIEISGTPDQTNIAKTVVEAF 660
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS-----GKEEPE 134
FR++ P ++GS+IG+ G +IK + T A+IK+ D S +R+++I G + +
Sbjct: 62 FRILCPASRIGSVIGKGGSIIKTLRQQTGAKIKIADAIPGSDERVIIIGAFDAEGGGDED 121
Query: 135 AP---------------------------VSPAMDAAVRVFKRV--SGLPENDVDAKASG 165
P PA A +V R+ + E+D+D S
Sbjct: 122 YPAGSGGGSAAALDKDDRAMDEYTNGRDVACPAQLALFKVHSRILDADKYEDDLDDSDSV 181
Query: 166 AAFCS----VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
S R+LVP Q L+GK+G +I+ ++E +G+ +R+L ++ P + +V
Sbjct: 182 EEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMREETGSQIRILPREQLPVCALPTDEVV 241
Query: 222 EMQGEAAKVLKALEAVVGHL 241
++ G+ V +AL A+ L
Sbjct: 242 QVVGDRPSVKRALNAISTRL 261
>gi|134026176|gb|AAI35317.1| LOC733863 protein [Xenopus (Silurana) tropicalis]
Length = 475
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 161/366 (43%), Gaps = 49/366 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G S P+RIV I+G
Sbjct: 19 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGPT-------- 68
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D++A + + S +RL+VP++Q +LIGK GS IK I
Sbjct: 69 --DAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 127 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 182
Query: 255 EKTYNASI---SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLES--- 308
K + I + + ET + H + P+ + + P + S
Sbjct: 183 PKPASGPIIFAGGQVRAETILASAGNHTVLAQP---QPAPAFAIQGQYAIPHPDVSSAHA 239
Query: 309 RYRLSGISI-YGQDPALSTIRSSALGRASGPIVTQITQT-----------------MQIP 350
Y L + I +GQ + + L P T + QT + IP
Sbjct: 240 NYTLLFLFICFGQHLLSTLTKLHQLAMQHTPF-TPLGQTTPGFPGLDATSPTSSHELTIP 298
Query: 351 ISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
IIG G+ I IR+ SGA I + + E V I G+ + + LAQ LI +
Sbjct: 299 NDLIGCIIGRQGSKINEIRQMSGAQIKIANASEGNGERQVTITGSPANISLAQYLINASL 358
Query: 411 NNHKES 416
K S
Sbjct: 359 EMAKLS 364
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 157 NDVDAKASGAAF-CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVT 215
ND +A G ++RLL+ + ++IGK+G +K ++E SGA + + S P
Sbjct: 4 NDANAPEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGSCP---- 58
Query: 216 EDERIVEMQGEAAKVLKALEAV 237
ERIV + G + KA +
Sbjct: 59 --ERIVTITGPTDAIFKAFSMI 78
>gi|255583245|ref|XP_002532387.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223527911|gb|EEF29999.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 688
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 113/239 (47%), Gaps = 26/239 (10%)
Query: 13 NLPEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWP 72
+L DP E P S PP G+ T H SD+ + DA AV E
Sbjct: 235 HLASSDPHAEFF----PHLSSLLPPLSGNSGTSHPLSSDAG--EDPNQDAEAVRHEVS-- 286
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIVLISGKE 131
FR++ GSIIG+KG +++ +T A I + P+S S +R+V IS E
Sbjct: 287 -------FRLLCSNGAAGSIIGKKGTIVRTLQNETGASI-MFAAPMSMSGERVVTISALE 338
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVD-AKASG---AAFCSVRLLVPSTQAINLI--G 185
E+ SPA +AA+ VF R E+D++ SG A + RLLV S LI G
Sbjct: 339 NLESWHSPAQNAAILVFARSV---EHDIEKGHPSGLIEGATVTARLLVASDAVCCLIEKG 395
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
G++ + E SGA +R+L ++ +ED+ ++E+ GE V AL V G LR
Sbjct: 396 GTGNIDSEMIEVSGADIRILDGEQIMACASEDDVVIEITGEYKNVQNALFMVTGKLRGL 454
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 35/198 (17%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRA-------------RIKVLDGPVSSP 121
PG FR++ +G +IGR G I + DT R+ + GP S
Sbjct: 22 PGQVAFRVVCHASIIGGLIGRSGSAISQIRRDTGCTVHCDEQVQGSDHRVITIVGPASPG 81
Query: 122 DRIVLIS--------GKEEPEAPVSPAMDAAVRVFKRV---------SGLPENDVDAKAS 164
RI L S +EE + VS A +A +RV +R+ G +N+ +
Sbjct: 82 KRITLNSTTCHDHNGAEEEEKELVSVAQEAVIRVCERMWEVDGQRERRGGVDNNSNNSGL 141
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G +C LL +TQ ++GK G + ++ SGA +R L P ++D++++++
Sbjct: 142 GEGYCG--LLADTTQIGAVVGKGGKNVLRMRRESGADIRFLP---PPHCASKDDQLIQIT 196
Query: 225 GEAAKVLKALEAVVGHLR 242
G V KAL AV L
Sbjct: 197 GSILAVKKALVAVTDCLH 214
>gi|413955311|gb|AFW87960.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
gi|413955312|gb|AFW87961.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
Length = 543
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 7/185 (3%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P + + P V+R + K+GSIIGR GE+ K+ +T+A+I++ + +R++
Sbjct: 26 PGDDTYAPGPDDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIGESVPGCEERVI 85
Query: 126 LISGK-------EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPST 178
I ++ E V PA DA RV +R++ + + +VRLLVPS
Sbjct: 86 TIFSSSRRTNTIDDAEDKVCPAQDALFRVHERLATDESFGNEDSEEISPQVTVRLLVPSD 145
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
Q ++GK G +I+ I+ +GA +RVLS D P + ++++ G+ V KAL V
Sbjct: 146 QIGCILGKGGHIIQGIRSETGAQIRVLSKDHIPACAISGDELLQISGDMVVVKKALCQVS 205
Query: 239 GHLRK 243
L
Sbjct: 206 SRLHN 210
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 122 DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAI 181
D I+ +S KE E PVSP +DAAVR+ R S ++++ ++ + RLLV +++
Sbjct: 323 DCIITVSAKEFFEDPVSPTIDAAVRLQLRCSEKSDSELAEQSY-----TTRLLVSTSRIG 377
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
LIGK GS+I I+ S A++R+LS + P EDE +V++ G AL + L
Sbjct: 378 CLIGKGGSIITEIRRTSRANIRILSKENVPKVAAEDEEMVQISGGLDVARHALVQIATRL 437
Query: 242 R-KFLVDQGVLPLF 254
+ F +G L F
Sbjct: 438 KANFFEREGSLSAF 451
>gi|351697348|gb|EHB00267.1| Poly(rC)-binding protein 3 [Heterocephalus glaber]
Length = 427
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 48/355 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 91 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 140
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 141 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 198
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 199 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 254
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTE-------YTPS-----TRRESLFLER 302
K + + +A + Q AI Y PS T+ L +++
Sbjct: 255 PKPASTPV-------IFAGGQAYTIQGQYAIPHPDPLAHGLYQPSAILQLTKLHQLAMQQ 307
Query: 303 EP-----QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDI 357
P Q + + ++ + A + + S AS P T + IP I
Sbjct: 308 TPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSPGLDASPPAS---THELTIPNDLIGCI 364
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
IG GT I IR+ SGA I + + E + I GT + + LAQ LI + +
Sbjct: 365 IGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTS 419
>gi|413955310|gb|AFW87959.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
Length = 528
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 7/185 (3%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P + + P V+R + K+GSIIGR GE+ K+ +T+A+I++ + +R++
Sbjct: 26 PGDDTYAPGPDDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIGESVPGCEERVI 85
Query: 126 LISGK-------EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPST 178
I ++ E V PA DA RV +R++ + + +VRLLVPS
Sbjct: 86 TIFSSSRRTNTIDDAEDKVCPAQDALFRVHERLATDESFGNEDSEEISPQVTVRLLVPSD 145
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
Q ++GK G +I+ I+ +GA +RVLS D P + ++++ G+ V KAL V
Sbjct: 146 QIGCILGKGGHIIQGIRSETGAQIRVLSKDHIPACAISGDELLQISGDMVVVKKALCQVS 205
Query: 239 GHLRK 243
L
Sbjct: 206 SRLHN 210
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 122 DRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAI 181
D I+ +S KE E PVSP +DAAVR+ R S ++++ ++ + RLLV +++
Sbjct: 323 DCIITVSAKEFFEDPVSPTIDAAVRLQLRCSEKSDSELAEQSY-----TTRLLVSTSRIG 377
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
LIGK GS+I I+ S A++R+LS + P EDE +V++ G AL + L
Sbjct: 378 CLIGKGGSIITEIRRTSRANIRILSKENVPKVAAEDEEMVQISGGLDVARHALVQIATRL 437
Query: 242 R-KFLVDQGVLPLF 254
+ F +G L F
Sbjct: 438 KANFFEREGSLSAF 451
>gi|426218399|ref|XP_004003434.1| PREDICTED: poly(rC)-binding protein 3 isoform 3 [Ovis aries]
Length = 336
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 151/351 (43%), Gaps = 56/351 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV-------------GHL 241
+E++GA V+V + D P ER V + G +++ ++ + G
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLEVQSKSPPRGVS 179
Query: 242 RKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE 301
R P+ A Q + D + LH T + P + F
Sbjct: 180 RVVAPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQ--QTPFPPLGQTNPAF-- 235
Query: 302 REPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVG 361
G D A+ +RS + P + T + IP IIG
Sbjct: 236 ----------------PGTDRAVPFVRSPWACLDASPPAS--THELTIPNDLIGCIIGRQ 277
Query: 362 GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
GT I IR+ SGA I + + E + I GT + + LAQ LI + +
Sbjct: 278 GTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTS 328
>gi|431893776|gb|ELK03594.1| Poly(rC)-binding protein 3 [Pteropus alecto]
Length = 339
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 158/341 (46%), Gaps = 37/341 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK +++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMRDESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-----QLESR 309
K + + +A + Q AI T+ L +++ P Q
Sbjct: 180 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTPFPPLGQTNPA 231
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+ +S++ + A + + + AS P T + IP IIG GT I IR
Sbjct: 232 FPGEKLSLHSSEEAQNLMGQPSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIR 288
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA I + + E + I GT + + LAQ LI +
Sbjct: 289 QMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 329
>gi|114684793|ref|XP_001157578.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Pan troglodytes]
gi|397506694|ref|XP_003823856.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Pan paniscus]
gi|426393343|ref|XP_004062984.1| PREDICTED: poly(rC)-binding protein 3 [Gorilla gorilla gorilla]
Length = 351
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 152/338 (44%), Gaps = 47/338 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + +A + Q AI T+ L +++ P
Sbjct: 212 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTP---------- 253
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
P L + G + P + T + IP IIG GT I IR+ SGA
Sbjct: 254 ------FPPLGQTNPAFPGLDASPPAS--THELTIPNDLIGCIIGRQGTKINEIRQMSGA 305
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
I + + E + I GT + + LAQ LI + +
Sbjct: 306 QIKIANATEGSSERQITITGTPANISLAQYLINARLTS 343
>gi|356525090|ref|XP_003531160.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 625
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 151/339 (44%), Gaps = 31/339 (9%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+ RM+ P K+G +IG+ G IK + + A I+V D + + +++I+ E P S
Sbjct: 308 IIRMLCPSDKIGRVIGKGGSTIKSMRQASGAHIEVDDSKANFDECLIIITTTESPSDLKS 367
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A++A + + ++ ND D S+RLLVPS +IGK GS+I I++ +
Sbjct: 368 MAVEAVLLMQGKI-----NDEDDTT-----VSIRLLVPSKVIGCIIGKSGSIINEIRKRT 417
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
A VR+ D+ P ++ +VE+ G V AL ++ LR VL + +
Sbjct: 418 KADVRISKGDK-PKCADANDELVEVGGSVDCVRDALIQIILRLR-----DDVLRERDTGH 471
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
N SI E A SL + S P ++ R LS S Y
Sbjct: 472 NPSIGAESLYPGSA-GLSLPSMMHS------VPPVAAPMVYDHRAESGAGLGMLSPSSPY 524
Query: 319 G-------QDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
G D ++ S A + G + T M IP + ++G GG +I NIR+
Sbjct: 525 GGYGSLPMGDNGYGSMSSYAT-KLYGGLPPPSTLDMLIPANAVGKVLGKGGANIANIRKI 583
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
SGA I + +++ + I GT Q + A+ LIQ ++
Sbjct: 584 SGASIEISDNKSARGDRIALISGTPEQKRAAENLIQAFI 622
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 168/363 (46%), Gaps = 33/363 (9%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI----SGKEEPE 134
V+R++ P +GS+IG+ G++I ++TRA++KV+D S DR++ I KE+ E
Sbjct: 38 VYRILCPDEVIGSVIGKNGKVINSIRQETRAKVKVVDPFPGSKDRVITIYCYVKEKEDVE 97
Query: 135 A--------PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGK 186
P+ A DA ++V ++ D++ ++LVPS+Q+ N+IGK
Sbjct: 98 IDDEFAGKEPLCAAQDALLKVHVAIANSIAAIGDSEKKRKDRDECQILVPSSQSANIIGK 157
Query: 187 QGSLIKSIQENSGASVRVLSADEA-PFY--VTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
G+ IK ++ + A+++V + D A P + E + V + GE+ V +AL AV + K
Sbjct: 158 AGATIKKLRSKTRANIKVTAKDAADPTHSCAMEFDNFVVITGESEAVKRALFAVSSIMYK 217
Query: 244 FLVDQGV-LPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER 302
F + + L SI V + L+ A+ + TP + +
Sbjct: 218 FGPREDISLDTAVPEAPPSIIIPSDVPVYP-PGGLYPASDPIV----TPRAVPQIIGATN 272
Query: 303 EPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGG 362
P L+ Y +G S AL + R+ I+ M P +IG GG
Sbjct: 273 VPDLQG-YADAGNSWPMYSSALPVVSGVGASRSEELII-----RMLCPSDKIGRVIGKGG 326
Query: 363 TSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQL------AQQLIQEYMNNHKES 416
++I+++R+ SGA I V +S+ DE + I T S L A L+Q +N+ ++
Sbjct: 327 STIKSMRQASGAHIEVDDSKANFDECLIIITTTESPSDLKSMAVEAVLLMQGKINDEDDT 386
Query: 417 ITS 419
S
Sbjct: 387 TVS 389
>gi|326517934|dbj|BAK07219.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 632
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 154/346 (44%), Gaps = 29/346 (8%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE 131
P G + R++ P K+G +IG+ G IK +++ AR+ V D + I+ +S E
Sbjct: 306 PKCSGELLLRVVCPGDKIGLVIGKAGMTIKNIRKESGARVDVDDAKNDKEESIITVSSTE 365
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ S A++A + + +++ E+ + +RLLVP LIGK GS+I
Sbjct: 366 ATDDVKSAAVEAVLLLQAKINDETEDRM----------HLRLLVPGNVIGCLIGKGGSII 415
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
++ S A + + S P + + +VE+ GE K+ AL +V LR+ ++ V
Sbjct: 416 NDMRNKSKAIIHI-SKGTKPRKASSSDELVEVFGEVDKLRDALVQIVLRLREDVLKDSV- 473
Query: 252 PLFEKTYNASISQERQVETW--ADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESR 309
N+ + V T SS S + TP + +ER + R
Sbjct: 474 ----GRQNSGKDGKLTVATTEPVSSSSFPMPALLPYSQQITPLRHDQRGEVERGSNVFPR 529
Query: 310 YRLSGISIYGQDPALST-----IRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTS 364
L +G P + +RSS + G V + M IP S ++G GT+
Sbjct: 530 SSL----YHGYSPREAVDDGFGVRSSYTSKPYGRRVPDME--MFIPSSGLSKVMGKHGTN 583
Query: 365 IENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
++NIR+ SGA I + ES+ + I GT Q Q A+ LI+ ++
Sbjct: 584 LDNIRKISGADIEILESKSSRHDHVAHIFGTPEQWQSAENLIKAFI 629
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 175/374 (46%), Gaps = 59/374 (15%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI----------- 127
V+R++ P +GS+IG+ G++I + T A++KV+D + R++L+
Sbjct: 39 VYRILCPDKVIGSVIGKGGKVINSIRQQTNAKVKVVDPYPGADKRVILVYCYVKHRDVML 98
Query: 128 ----SGKEEPEAPVSPAMDAAVRVFKRVSG--LPENDVDAKASGAAFCSVRLLVPSTQAI 181
+ ++ PV A +A ++V + G +D D K + +LVP++QA
Sbjct: 99 SDINADDDDDREPVCAAQNALLKVHDAIVGALAVTDDSDDKEAN-------ILVPASQAA 151
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTED-----ERIVEMQGEAAKVLKALEA 236
++IGK GS+IK ++ S + ++V D P VT + V++ G+A V KAL A
Sbjct: 152 SVIGKSGSVIKKLRSVSKSFIKVKPKD--PSDVTHSCAMSFDNFVQITGDARAVKKALFA 209
Query: 237 VVGHLRKFLVDQGVLPLFEKTYNA---SISQERQVETWADKSSLHAATQSAI-----STE 288
V + K + + PL E + + +I ++ + SSL++ + +++ S
Sbjct: 210 VSTIMYKCPSKENI-PL-ETSIDELPPTIILPSELPVYP-ASSLYSVSDASMPSGHPSLS 266
Query: 289 YTPSTRRESLFLEREPQLESRYRLSGISIY-GQDPALSTIRSSALGRASGPIVTQITQTM 347
+T R S + +++ G+ IY PA+ T + + SG ++ ++
Sbjct: 267 ILGATSRGSHVPDFTVPIDTH---GGLPIYQSMVPAVPTYNTP---KCSGELLLRVV--- 317
Query: 348 QIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQL------ 401
P +IG G +I+NIR+ SGA + V +++ +E + + T + +
Sbjct: 318 -CPGDKIGLVIGKAGMTIKNIRKESGARVDVDDAKNDKEESIITVSSTEATDDVKSAAVE 376
Query: 402 AQQLIQEYMNNHKE 415
A L+Q +N+ E
Sbjct: 377 AVLLLQAKINDETE 390
>gi|294462548|gb|ADE76820.1| unknown [Picea sitchensis]
Length = 340
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 145/320 (45%), Gaps = 17/320 (5%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
++T A IKV+D +R++++S KE + +SP ++A + + + S E ++
Sbjct: 24 QETGANIKVIDQVPDCDERVIVVSSKEFVDDRISPTLEAVLHLQFKTS---EKSIEEGKE 80
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G + R LVPS L+GK GS+I +++ + A++R++S D P E+E +V++
Sbjct: 81 GV--ITTRFLVPSNSIGCLLGKGGSIISEMRKRTRANIRIMSKDNIPKCAGENEELVQVI 138
Query: 225 GEAAKVLKALEAVVGHLR-KFLVDQ-------GVLPLFEKTYNASISQERQVETWADKSS 276
GE +AL + LR DQ V+P Y + S+
Sbjct: 139 GEVDVAREALIQIATRLRSNVFKDQDGGSNAGSVVPPSLSLYGRGVPDSGFGRGDELGST 198
Query: 277 LHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRAS 336
+ ++ E T S R S +++ YG + ST R+ A G +
Sbjct: 199 GRMYSLPSLGLEGTASGRYSSASYGSLGGVQNGGAGG----YGSFSSFSTSRAPAGGLPA 254
Query: 337 GPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTS 396
G + T + IP I+G GG++I IR SGA + + ES+ + VEI GT
Sbjct: 255 GVAKSGSTVEVTIPNKSVGSILGRGGSNISQIREISGAKVKLHESKPGGTDRVVEISGTP 314
Query: 397 SQVQLAQQLIQEYMNNHKES 416
Q AQ L+Q + + + S
Sbjct: 315 EQTHAAQSLLQAFAMSGQNS 334
>gi|449445515|ref|XP_004140518.1| PREDICTED: poly(rC)-binding protein 2-like [Cucumis sativus]
gi|449529952|ref|XP_004171961.1| PREDICTED: poly(rC)-binding protein 2-like [Cucumis sativus]
Length = 276
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPV 137
+FR++VP ++G +IG+ G I+K E+T+A IK+ D +R+++IS K+ E V
Sbjct: 69 VLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDN-ENSV 127
Query: 138 SPAMDA----AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKS 193
+ A A A + K G ++ A ++RLL+ +QA +LIG G I+
Sbjct: 128 TDAEKALQQIAALILKE-DGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEK 186
Query: 194 IQENSGASVRVLSADEAPFYVT--EDERIVEMQGEAAKVLKALEAVVGHLR 242
++ +SGAS+ +L+ ++ P + E +R+V++ G+ VLKALE + LR
Sbjct: 187 LRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLR 237
>gi|414870928|tpg|DAA49485.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 770
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 69/333 (20%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
P ++R++ PV K+GS++GR G+++K E+T+A+I+V D + +R+++I +
Sbjct: 40 PIETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNEP 99
Query: 135 APVSP------------------AMDAAVRVFKR-VSGLPENDV--DAKASGAAFCSVRL 173
P A DA +++ + VS ++V D K+ A + R+
Sbjct: 100 EPTDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEIHDEVANDEKSESADDVTARI 159
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA 233
LV Q L+GK GS+I+ ++ N+GA +RVL ++ P + + +V++ G + V KA
Sbjct: 160 LVQGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQCALKSDELVQISGAPSLVRKA 219
Query: 234 LEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPST 293
L + L + + PL E+ +AS ++R+ T + S+ + +++TP
Sbjct: 220 LYEISTRLHQHPRKEN-RPL-EEIIDASTQRKRESPTLQHEYSM----LPHLHSDHTPPI 273
Query: 294 RRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPI--VTQITQTMQIPI 351
P L R SGP VT+ T+ I I
Sbjct: 274 ----------------------------PLLDPYR-------SGPQYPVTE-TEEFSIRI 297
Query: 352 SYAEDIIG-VGGTSIENIRRT---SGAIITVQE 380
A ++IG V G S N+RR +GA I VQE
Sbjct: 298 LCASELIGSVIGKSGANVRRVEQQTGARIKVQE 330
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 12/165 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV--LDGPVSSPDRIVLISGKEEPEAPV 137
R++ +GS+IG+ G +++ + T ARIKV +D S +R+++IS E P P+
Sbjct: 295 IRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG-ERLIIISSNEIPAEPI 353
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
SPA++A + + +VS E S RL+VPS++ +IG+ G +I ++
Sbjct: 354 SPAIEALILLHDKVSAPSEKH---------HSSTRLVVPSSKVGCIIGEGGKVITDMRRR 404
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+GA +RV S + P Y++ D+ +V++ G AL + LR
Sbjct: 405 TGAEIRVYSKADKPKYLSFDDELVQVAGPPTIARGALTEIASRLR 449
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 335 ASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKG 394
A+G ++ I ++IP S I+G GG ++ IR+ SGA + + E+ E VEI+G
Sbjct: 675 ATGRFLSTIE--LRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQG 732
Query: 395 TSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYPQLG 436
T Q + AQ L+Q +++ + Y + P YP G
Sbjct: 733 TLDQAKAAQSLLQGFISANSRQQQQPY----SSRMPLYPSWG 770
>gi|384248562|gb|EIE22046.1| hypothetical protein COCSUDRAFT_43031 [Coccomyxa subellipsoidea
C-169]
Length = 243
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
V+R++V KVGS+IG+ G ++K ++T ARI+V++G + +R+++IS + +
Sbjct: 104 VYRLLVQSKKVGSVIGKAGTIVKAIRDETGARIRVVEGVPNCDERVIVISARSDAARHTD 163
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A +A +V RV E A+ + R+LV TQA LIGK G++IK I+E S
Sbjct: 164 AAQEALFKVHARVHEHEEGPHPPPANA----TTRMLVCHTQAGCLIGKAGAIIKEIREAS 219
Query: 199 GASVRVLSADEAPFYVTEDERIVE 222
GA +++L A++ P ++R+V+
Sbjct: 220 GAHIKILPAEDLPPCGLSNDRVVQ 243
>gi|426218401|ref|XP_004003435.1| PREDICTED: poly(rC)-binding protein 3 isoform 4 [Ovis aries]
Length = 332
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 153/347 (44%), Gaps = 52/347 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL----RKFLV---- 246
+E++GA V+V + D P ER V + G +++ ++ + + RK +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPRKGVTVVVA 179
Query: 247 -DQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQ 305
P+ A Q + D + LH T + P + F
Sbjct: 180 PKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQ--QTPFPPLGQTNPAF------ 231
Query: 306 LESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSI 365
G D A+ +RS + P + T + IP IIG GT I
Sbjct: 232 ------------PGTDRAVPFVRSPWACLDASPPAS--THELTIPNDLIGCIIGRQGTKI 277
Query: 366 ENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
IR+ SGA I + + E + I GT + + LAQ LI + +
Sbjct: 278 NEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTS 324
>gi|195655947|gb|ACG47441.1| nucleic acid binding protein [Zea mays]
gi|414870927|tpg|DAA49484.1| TPA: nucleic acid binding protein [Zea mays]
Length = 769
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 69/333 (20%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
P ++R++ PV K+GS++GR G+++K E+T+A+I+V D + +R+++I +
Sbjct: 40 PIETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNEP 99
Query: 135 APVSP------------------AMDAAVRVFKR-VSGLPENDV--DAKASGAAFCSVRL 173
P A DA +++ + VS ++V D K+ A + R+
Sbjct: 100 EPTDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEIHDEVANDEKSESADDVTARI 159
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA 233
LV Q L+GK GS+I+ ++ N+GA +RVL ++ P + + +V++ G + V KA
Sbjct: 160 LVQGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQCALKSDELVQISGAPSLVRKA 219
Query: 234 LEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPST 293
L + L + + PL E+ +AS ++R+ T + S+ + +++TP
Sbjct: 220 LYEISTRLHQHPRKEN-RPL-EEIIDASTQRKRESPTLQHEYSM----LPHLHSDHTPPI 273
Query: 294 RRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPI--VTQITQTMQIPI 351
P L R SGP VT+ T+ I I
Sbjct: 274 ----------------------------PLLDPYR-------SGPQYPVTE-TEEFSIRI 297
Query: 352 SYAEDIIG-VGGTSIENIRRT---SGAIITVQE 380
A ++IG V G S N+RR +GA I VQE
Sbjct: 298 LCASELIGSVIGKSGANVRRVEQQTGARIKVQE 330
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 12/165 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV--LDGPVSSPDRIVLISGKEEPEAPV 137
R++ +GS+IG+ G +++ + T ARIKV +D S +R+++IS E P P+
Sbjct: 295 IRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG-ERLIIISSNEIPAEPI 353
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
SPA++A + + +VS E S RL+VPS++ +IG+ G +I ++
Sbjct: 354 SPAIEALILLHDKVSAPSEKH---------HSSTRLVVPSSKVGCIIGEGGKVITDMRRR 404
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+GA +RV S + P Y++ D+ +V++ G AL + LR
Sbjct: 405 TGAEIRVYSKADKPKYLSFDDELVQVAGPPTIARGALTEIASRLR 449
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T ++IP S I+G GG ++ IR+ SGA + + E+ E VEI+GT Q + AQ
Sbjct: 681 TIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAAQ 740
Query: 404 QLIQEYMNNHKESITSSYGQIDTGYRPSYPQLG 436
L+Q +++ + Y + P YP G
Sbjct: 741 SLLQGFISANSRQQQQPY----SSRMPLYPSWG 769
>gi|301604860|ref|XP_002932078.1| PREDICTED: poly(rC)-binding protein 3-like [Xenopus (Silurana)
tropicalis]
Length = 339
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 156/348 (44%), Gaps = 47/348 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLP-- 252
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 253 --------LFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP 304
+F SI + + + LH T +TP + F +
Sbjct: 180 PKPASAPVIFAGGQAYSIQGQYAIPHPDQLTKLHQLAMQ--QTPFTPLGQTTPAFPGEKL 237
Query: 305 QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTS 364
L S ++ GQ + A +AS T + IP IIG GT
Sbjct: 238 PLHSSEEAQ--NLMGQSAGM-----DASSQAS-------THELTIPNDLIGCIIGRQGTK 283
Query: 365 IENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
I IR+ SGA I + + E + I G+ + + LAQ LI + +
Sbjct: 284 INEIRQMSGAQIKIASAMEGSAERQITITGSPANISLAQYLINARLTS 331
>gi|403297205|ref|XP_003939469.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 351
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 152/338 (44%), Gaps = 47/338 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 97
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 98 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 211
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + +A + Q AI T+ L +++ P
Sbjct: 212 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTP---------- 253
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
P L + G + P + T + IP IIG GT I IR+ SGA
Sbjct: 254 ------FPPLGQTNPAFPGLDASPPAS--THELTIPNDLIGCIIGRQGTKINEIRQMSGA 305
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
I + + E + I GT + + LAQ LI + +
Sbjct: 306 QIKIANATEGSSERQITITGTPANISLAQYLINARLTS 343
>gi|395536911|ref|XP_003770452.1| PREDICTED: poly(rC)-binding protein 3 isoform 3 [Sarcophilus
harrisii]
Length = 318
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 153/338 (45%), Gaps = 48/338 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + +A + Q AI + T+ L +++ P
Sbjct: 180 PKPASTPV-------IFAGGQAYTIQGQYAIP--HPDLTKLHQLAMQQTP---------- 220
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
P L + G + P + T + IP IIG GT I IR+ SGA
Sbjct: 221 ------FPPLGQTTPAFPGLDASPPAS--THELTIPNDLIGCIIGRQGTKINEIRQMSGA 272
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
I + + E + I GT + + LAQ LI + +
Sbjct: 273 QIKIANATEGSSERQITITGTPANISLAQYLINARLTS 310
>gi|291414465|ref|XP_002723480.1| PREDICTED: poly(rC) binding protein 2-like [Oryctolagus cuniculus]
Length = 319
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 155/339 (45%), Gaps = 49/339 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIISSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + +A + Q AI + T+ L +++ P
Sbjct: 180 PKPASTPV-------IFAGGQAYTIQGQYAIP--HPDLTKLHQLAMQQTP---------- 220
Query: 315 ISIYGQ-DPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
GQ +PA G + P + T + IP IIG GT I IR+ SG
Sbjct: 221 FPPLGQTNPAFPA------GLDASPPAS--THELTIPNDLIGCIIGRQGTKINEIRQMSG 272
Query: 374 AIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
A I + + E + I GT + + LAQ LI + +
Sbjct: 273 AQIKIANATEGSSERQITITGTPANISLAQYLINARLTS 311
>gi|55742577|ref|NP_998282.1| poly(rC)-binding protein 4 [Danio rerio]
gi|33604078|gb|AAH56323.1| Zgc:65870 [Danio rerio]
gi|41946775|gb|AAH65955.1| Zgc:65870 [Danio rerio]
Length = 442
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/366 (26%), Positives = 163/366 (44%), Gaps = 62/366 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G S P+RI+ I+G
Sbjct: 7 LRLLMHGKEVGSIIGKKGETVKRIREESSARINISEG--SCPERIITITG---------- 54
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + R F ++ E D+ A + S +RL++P++Q +LIGK GS IK I
Sbjct: 55 ATECVFRAFTMITIKLEEDLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEI 114
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E +GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 115 REKTGAQVQV-AGDLLP---NSTERGVTISGSQDAIIQCVKLICTVILESPPKGATIP-- 168
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTP----STRRESLFLEREPQLESRY 310
Y S A + L A Q ++E+ S + L L++ ++++Y
Sbjct: 169 ---YRPS---------PAPGAVLLAGNQVFETSEFASHPLFSVAQGGLDLQQAYTVQNQY 216
Query: 311 RLSGISIYGQDPALSTIRSSALGRASGPI----VTQI------------TQTMQIPISYA 354
+ L+ + ++ + GPI TQ+ +Q + IP
Sbjct: 217 GIP-------HSELAKLHQLSMQQGLGPIAQATATQVLPAGIESSSQTASQELLIPNDLI 269
Query: 355 EDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
IIG GT I IR+ SGA I + + V I G+ + LAQ LI + K
Sbjct: 270 GSIIGRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTITGSPISINLAQYLITSCLETAK 329
Query: 415 ESITSS 420
+ SS
Sbjct: 330 STAQSS 335
>gi|392884376|gb|AFM91020.1| poly(rC) binding protein 3, isoform CRAb [Callorhinchus milii]
Length = 349
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 161/347 (46%), Gaps = 39/347 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK ++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMRVESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D++ + + S +RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAFKFEEDINNSMTNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGMPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNAS-ISQERQVETWADKSSL-HAATQSAISTEYTPSTRRESLFLEREPQL------ 306
K +A I Q T + ++ H +S EY + + L R PQL
Sbjct: 180 PKPASAPVIFAGGQAYTIQGQYAIPHPDDACLLSAEYKTAL---TSTLWRSPQLAHPSSQ 236
Query: 307 --ESRYRLSGISIYGQ-DPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGT 363
E+ +R S+ G+ + S G + P + T + IP IIG GT
Sbjct: 237 LKEAAWRPE--SLRGKMELKNCNEESENWGMDANPQAS--THELTIPNDLIGCIIGRQGT 292
Query: 364 SIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I IR+ SGA I + + E + I G+ + + LAQ LI +
Sbjct: 293 KINEIRQMSGAQIKIANATEGSTERQITITGSPANISLAQYLINARL 339
>gi|241025456|ref|XP_002406183.1| poly(rc) binding protein, putative [Ixodes scapularis]
gi|215491885|gb|EEC01526.1| poly(rc) binding protein, putative [Ixodes scapularis]
Length = 398
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 148/332 (44%), Gaps = 46/332 (13%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+VGSIIG+KG+ IKK E++ A+I + DG S P+RIV ++G E + A R
Sbjct: 3 EVGSIIGKKGDNIKKFREESGAKINISDG--SCPERIVTVTGSTE---AILKAFSLIARK 57
Query: 148 FKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
F+ VS + ++G+ ++RL+VP++Q +LIGK GS IK I+E + AS++
Sbjct: 58 FEEVS------TSSHSNGSHLPKPPVTLRLIVPASQCGSLIGKGGSKIKEIRE-ARASIQ 110
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
V S ER V + G A + K + + + + +P K +
Sbjct: 111 VASE----MLPNSTERAVTVSGTADAITKCIYQICCVMMESPPKGATIPYRPKPAMPPV- 165
Query: 264 QERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPA 323
+A + Q AI + T+ L L+ P L G S+ +P
Sbjct: 166 ------IFAGGQAYTVQGQYAI--PHPDLTKLHQLALQHAP------LLPGHSVGAINP- 210
Query: 324 LSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRG 383
+A+ + T M IP IIG GG+ I IR+ SGA I + S
Sbjct: 211 ----------QAAIATASTTTTEMTIPNDLIGCIIGKGGSKINEIRQLSGATIKISNSEE 260
Query: 384 LPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
+ TV I GT + LAQ LI M HK
Sbjct: 261 GSKDRTVTISGTPEAINLAQYLINTSMELHKN 292
>gi|357145086|ref|XP_003573519.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 632
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 161/354 (45%), Gaps = 46/354 (12%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE 131
P G + R++ P K+G +IG+ G IK +++ A I V D + I+ ++ E
Sbjct: 307 PKGSGDLLLRVVCPGDKIGLVIGKGGMTIKSIRKESGANIDVDDAKNDREESIITVTSTE 366
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ S A++A + + +++ E+ + +RLLVP LIGK GS++
Sbjct: 367 ATDDVKSAAVEAVLLLQAKINDGIEDRM----------HIRLLVPGNVIGCLIGKGGSIV 416
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
++ S A + + S P + + +VE+ GE K+ AL +V LR+ ++ V
Sbjct: 417 NDMRNKSKAIIHI-SKGSKPRRASSSDELVEVFGEVDKLRDALVQIVLRLREDVLKDSV- 474
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYT-----PSTRRES-LFLEREPQ 305
ERQ K ++ A T+ S+ ++ PSTR+ S L ++ +
Sbjct: 475 -------------ERQNSDKDGKRTI-AITEPMYSSNFSMPALLPSTRQVSPLSYDQRGE 520
Query: 306 LESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQT---------MQIPISYAED 356
+E G+ +Y + + A+ G + +++ M IP S
Sbjct: 521 VER-----GLDVYPRSSSYRYSSLQAVDDGYGAHSSYTSKSYGGRRPDIEMIIPASGLSK 575
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+IG GT+++NIR+ SGA I + ES+ + I GT Q Q A+ LI+ ++
Sbjct: 576 VIGKRGTNLDNIRKISGADIEIIESKSSRHDHVAHISGTPEQRQSAENLIRAFI 629
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 27/179 (15%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI----------- 127
V+R++ P +GS+IG+ G++I + T A++KV+D + R++L+
Sbjct: 40 VYRILCPDKVIGSVIGKNGKVINSIRQQTNAKVKVVDPYPGADKRVILVYCHVHHRDLTH 99
Query: 128 ----SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINL 183
++ PV A +A ++V + + D+ A +LVP++QA ++
Sbjct: 100 RDIDVDDDDDREPVCAAQNALLKVHDAIVEALAINSDSDDEEA-----NILVPASQAASV 154
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEAPFYVTED-----ERIVEMQGEAAKVLKALEAV 237
IGK GS+IK ++ S +S++V D P VT + V++ G+A V KAL AV
Sbjct: 155 IGKSGSVIKRLRSISKSSIKVRPKD--PSEVTHSCAMSFDNFVQITGDARAVKKALFAV 211
>gi|260829253|ref|XP_002609576.1| hypothetical protein BRAFLDRAFT_87781 [Branchiostoma floridae]
gi|229294938|gb|EEN65586.1| hypothetical protein BRAFLDRAFT_87781 [Branchiostoma floridae]
Length = 408
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 151/353 (42%), Gaps = 57/353 (16%)
Query: 68 EKKWPGWPGHCVF--RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
E K PG R+I+ VGSIIG+KG+ IK+ E++ ARI + DG SSP+RIV
Sbjct: 8 ENKVPGEAPSVTLTIRLIMQGKDVGSIIGKKGDTIKRFREESGARINISDG--SSPERIV 65
Query: 126 LISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAI 181
I+G E ++ F + E D+ A ++ ++RL+VP++Q
Sbjct: 66 TITGSTE----------NILKAFNMIGKKFEEDMKAAHVNSSVPVPPVTLRLIVPASQCG 115
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+LIGK GS IK I+E +GAS++V + D P ER V + G A+ V H+
Sbjct: 116 SLIGKGGSKIKEIREVTGASIQV-AGDMLP---NSTERAVTVSGTP----DAISQCVYHI 167
Query: 242 RKFLVDQ----GVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRES 297
+++ +P + + + + V + LH
Sbjct: 168 CCVMLESPPKGATIPYKPRPASGTSTSGPVVFAGGQLTKLH------------------Q 209
Query: 298 LFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDI 357
L L++ P + L AL+T G +Q T + IP I
Sbjct: 210 LALQQTPYITPGTTLPA--------ALATQFGVQTASQPGNPSSQ-THELTIPNELIGCI 260
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
IG GG I IR+ SGA I + + + V I GT + +AQ LI +
Sbjct: 261 IGKGGCKINEIRQCSGATIKIAGMQEGSTDRQVTITGTPESISMAQFLINTSL 313
>gi|58865460|ref|NP_001011945.1| poly(rC)-binding protein 3 [Rattus norvegicus]
gi|50927011|gb|AAH79196.1| Poly(rC) binding protein 3 [Rattus norvegicus]
Length = 319
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 151/336 (44%), Gaps = 47/336 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + +A + Q AI T+ L +++ P
Sbjct: 180 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTP---------- 221
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
P L + G + P + T + IP IIG GT I IR+ SGA
Sbjct: 222 ------FPPLGQTNPAFPGLDASPPAS--THELTIPNDLIGCIIGRQGTKINEIRQMSGA 273
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I + + E + I GT + + LAQ LI +
Sbjct: 274 QIKIANATEGSSERQITITGTPANISLAQYLINARL 309
>gi|193248243|dbj|BAC04327.2| unnamed protein product [Homo sapiens]
Length = 319
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 151/336 (44%), Gaps = 47/336 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + +A + Q AI T+ L +++ P
Sbjct: 180 PKPASTPV-------IFAGGQAYTIQGQYAIP-HPDQLTKLHQLAMQQTP---------- 221
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
P L + G + P + T + IP IIG GT I IR+ SGA
Sbjct: 222 ------FPPLGQTNPAFPGLDASPPAS--THELTIPNDLIGCIIGRQGTKINEIRQMSGA 273
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I + + E + I GT + + LAQ LI +
Sbjct: 274 QIKIANATEGSSERQITITGTPANISLAQYLINARL 309
>gi|125532489|gb|EAY79054.1| hypothetical protein OsI_34164 [Oryza sativa Indica Group]
gi|125575260|gb|EAZ16544.1| hypothetical protein OsJ_32017 [Oryza sativa Japonica Group]
Length = 769
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 108/211 (51%), Gaps = 20/211 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI---SGKE 131
P ++R++ PV K+GS++GR G+++K + T+A+I+V D + +R+++I S +
Sbjct: 50 PIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIRVADSIPGADERVIIIFNYSSQT 109
Query: 132 EPEA------------PVSPAMDAAVRVFKRVSG---LPENDVDAKASGAAFCSVRLLVP 176
E A P A DA +++ +++ L V K+ R+LVP
Sbjct: 110 EEAAQNISTDGFEDMKPHCFAQDALLKIHDKIAADEDLHAGIVHEKSENVDDVIARILVP 169
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
Q L+GK GS+I+ ++ ++GA +RVL ++ P + + +V++ G ++ V KAL
Sbjct: 170 GNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLPQCALKSDELVQISGSSSLVRKALYE 229
Query: 237 VVGHLRKFLVDQGVLPLFEKTYNASISQERQ 267
+ L + P E+ +AS ++ Q
Sbjct: 230 ISTRLHQHPRKDN--PPLEEIIDASTQRKHQ 258
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 90/162 (55%), Gaps = 10/162 (6%)
Query: 89 VGSIIGRKGELIKKTCEDTRARIKVLD-GPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+G +IG+ G +++ + T A ++V + G +S +R++++S +E P+ PVSP ++A + +
Sbjct: 313 IGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEALILL 372
Query: 148 FKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA 207
+VS L EN + RL+VPS + +IG+ G +I ++ +GA +RV S
Sbjct: 373 HSKVSTLAENH---------HLTTRLVVPSNKVGCIIGEGGKVITEMRRRTGAEIRVYSK 423
Query: 208 DEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
+ P Y++ DE +V++ G A AL + LR + G
Sbjct: 424 ADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTRTLRDG 465
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
+IP SY E +IG GG ++ IR+ SGA + + E+ E VEI+G QV+ AQ L+
Sbjct: 687 FRIPNSYLESVIGAGGVNLAEIRQISGARVKLHEAHPGSSESIVEIQGIPDQVKAAQSLL 746
Query: 407 QEYM 410
Q ++
Sbjct: 747 QGFI 750
>gi|297740744|emb|CBI30926.3| unnamed protein product [Vitis vinifera]
Length = 435
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 148/336 (44%), Gaps = 27/336 (8%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+ R++ P K+G +IGR G IK E + A ++V D + ++ ++ E + S
Sbjct: 120 IIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTESVDDLKS 179
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A++A + + ++ ND D ++RLLVPS +IGK GS+I I++ +
Sbjct: 180 MAVEAVLLLQAKI-----NDEDDDT-----VAIRLLVPSKIIGCIIGKSGSIINEIRKRT 229
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
A VR+ S E P ++ ++E+ GE V AL +V LR L + +
Sbjct: 230 RADVRI-SKSERPKCADANDELIEVVGEVGSVRDALVQIVLRLR-----DDALKDRDTGH 283
Query: 259 NASISQERQVETWAD---KSSLHAATQSA-ISTEYTPSTRRESLFLEREPQLESRYRLSG 314
N S + A S L +A A +S + T L G
Sbjct: 284 NTSAGTDSLYSGGAGLSVSSVLPSAPPVAPLSYDQRAETGSGLGLLSSSSLYGYGSLSVG 343
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
+ YG SS + G + T T M IP + ++G GG +I NIR+ SGA
Sbjct: 344 ENAYGS-------MSSYSSKLYGGLPTPSTFDMVIPANAVGKVMGKGGANIANIRKISGA 396
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+I + +S+ + I GT Q + A+ LIQ ++
Sbjct: 397 VIEISDSKSSRGDRVALISGTPEQKRTAENLIQAFI 432
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K + G P F M++P VG ++G+ G I + + A I++ D S DR+ LIS
Sbjct: 356 KLYGGLPTPSTFDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALIS 415
Query: 129 GKEE 132
G E
Sbjct: 416 GTPE 419
>gi|224118310|ref|XP_002317787.1| predicted protein [Populus trichocarpa]
gi|222858460|gb|EEE96007.1| predicted protein [Populus trichocarpa]
Length = 655
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 104/432 (24%), Positives = 183/432 (42%), Gaps = 57/432 (13%)
Query: 9 NGSINLPE----PDPQPETATTESPTTESEAPPTIGSE--NTEHTTESDSALPQSTGPDA 62
+G ++ PE D P T S + PP+ GS + + + S+ DA
Sbjct: 253 HGRVHSPERLFDDDYAPHMNTRRSSM---DGPPSFGSRVPGSNYRNNNYSSRASGFAADA 309
Query: 63 AAVP-EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP 121
A P + P + VFR++ P+ K+ ++G ++ + +KV D PVS
Sbjct: 310 GADPIADSAQPFYVEDLVFRILCPIDKLNRVVGESDGIVDLLQNEIGVDVKVAD-PVSGS 368
Query: 122 D-RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQ 179
D +I+ I +E P+ + PA +A + + R+ L P+ND + RLLV S++
Sbjct: 369 DEQIITIFSEEGPDDELFPAQEALLHIQTRIVDLVPDND--------HITTTRLLVRSSE 420
Query: 180 AINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVG 239
L G+ SL I+ +GA++ +L ++ P Y++ + IV+++GE AL V
Sbjct: 421 IGCLEGRDASL-SEIERLTGATIEILPKEKLPSYLSGIDEIVQIEGEIRAARDALVEVTS 479
Query: 240 HLRKFLVDQGVLPLFEKTYNASISQ----------------ERQVETWADKSSLHAATQS 283
LR ++ +FEK +S R+ D + + QS
Sbjct: 480 RLRSYIYKD----VFEKDLPPPVSAPGLAGGMQAASPSPTPAREGPIGGDPPASYQNVQS 535
Query: 284 AISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQI 343
A + + + R S+ ++ + E R L + + R +VT+
Sbjct: 536 AATPQPSKDARGSSVEAVKQNESERREELP---------------VTTMNRIPVTLVTRS 580
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T + IP +I + I SGA +T+ E R E ++I GT Q + AQ
Sbjct: 581 TLEVVIPEPAVPKLITKSKNKLAQISELSGANVTLVEDRPDVKEKIIKISGTPEQAERAQ 640
Query: 404 QLIQEYMNNHKE 415
L+Q ++ + +E
Sbjct: 641 SLLQGFILSTQE 652
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 141/343 (41%), Gaps = 73/343 (21%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG--KEEPEAPV 137
+R++ +K G +IG+ G +IK + T A I V + +RI+ IS + +PE +
Sbjct: 62 YRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 121
Query: 138 ---SPAMDAAVRVFKR--------------VSGLPENDVDAKASGAAFCSVRLLVPSTQA 180
SPA +A + R V GL E++ + G + RL+V
Sbjct: 122 PSFSPAQEALFLIHDRILENDLQYGVVSSGVGGLEEDEYVGR--GGNRVATRLVVSRMHV 179
Query: 181 INLIGKQGSLIKSIQENSGASVRVLSADEA-PFYVTEDERIVEMQGEAAKVLKALEAVVG 239
L+GK G +I+ ++ + +R+L D P V+ E IV++ G+ + V A+ +
Sbjct: 180 GCLLGKGGKIIEQMRMETKTQIRILPRDHTLPRCVSMSEEIVQVVGDVSAVKNAVAIISS 239
Query: 240 HLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQS---AISTEYTP--STR 294
LR+ SQ R D+S H S +Y P +TR
Sbjct: 240 RLRE-------------------SQHR------DRSHFHGRVHSPERLFDDDYAPHMNTR 274
Query: 295 RESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYA 354
R S ++ P SR + G + + S A G A+ I + Q P Y
Sbjct: 275 RSS--MDGPPSFGSR-------VPGSNYRNNNYSSRASGFAADAGADPIADSAQ-PF-YV 323
Query: 355 EDIIGVGGTSIENIRRTSGAIITVQESRGLPD----EITVEIK 393
ED++ I+ + R G ES G+ D EI V++K
Sbjct: 324 EDLVFRILCPIDKLNRVVG------ESDGIVDLLQNEIGVDVK 360
>gi|115482708|ref|NP_001064947.1| Os10g0495000 [Oryza sativa Japonica Group]
gi|22128716|gb|AAM92828.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|110289325|gb|ABB47821.2| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113639556|dbj|BAF26861.1| Os10g0495000 [Oryza sativa Japonica Group]
gi|215694845|dbj|BAG90036.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 762
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 108/211 (51%), Gaps = 20/211 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI---SGKE 131
P ++R++ PV K+GS++GR G+++K + T+A+I+V D + +R+++I S +
Sbjct: 43 PIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIRVADSIPGADERVIIIFNYSSQT 102
Query: 132 EPEA------------PVSPAMDAAVRVFKRVSG---LPENDVDAKASGAAFCSVRLLVP 176
E A P A DA +++ +++ L V K+ R+LVP
Sbjct: 103 EEAAQNISTDGFEDMKPHCFAQDALLKIHDKIAADEDLHAGIVHEKSENVDDVIARILVP 162
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
Q L+GK GS+I+ ++ ++GA +RVL ++ P + + +V++ G ++ V KAL
Sbjct: 163 GNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLPQCALKSDELVQISGSSSLVRKALYE 222
Query: 237 VVGHLRKFLVDQGVLPLFEKTYNASISQERQ 267
+ L + P E+ +AS ++ Q
Sbjct: 223 ISTRLHQHPRKDN--PPLEEIIDASTQRKHQ 251
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 90/162 (55%), Gaps = 10/162 (6%)
Query: 89 VGSIIGRKGELIKKTCEDTRARIKVLD-GPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+G +IG+ G +++ + T A ++V + G +S +R++++S +E P+ PVSP ++A + +
Sbjct: 306 IGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEALILL 365
Query: 148 FKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA 207
+VS L EN + RL+VPS + +IG+ G +I ++ +GA +RV S
Sbjct: 366 HSKVSTLAENH---------HLTTRLVVPSNKVGCIIGEGGKVITEMRRRTGAEIRVYSK 416
Query: 208 DEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
+ P Y++ DE +V++ G A AL + LR + G
Sbjct: 417 ADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTRTLRDG 458
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
+IP SY E +IG GG ++ IR+ SGA + + E+ E VEI+G QV+ AQ L+
Sbjct: 680 FRIPNSYLESVIGAGGVNLAEIRQISGARVKLHEAHPGSSESIVEIQGIPDQVKAAQSLL 739
Query: 407 QEYM 410
Q ++
Sbjct: 740 QGFI 743
>gi|326490983|dbj|BAK05591.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 688
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 156/350 (44%), Gaps = 35/350 (10%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+FR++ P K S++G + +I + +++ D S +R ++I+ +E P+ +
Sbjct: 364 IFRILCPNDKAISLVGSRDGIIDMLQAEVGVDVRLTDLIAGSDERTLIITSREGPDHELF 423
Query: 139 PAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PA +A + + + L P+ D + RLLVPS++ G+ GSL IQ
Sbjct: 424 PAQEALLHIQTFIVDLGPDKD--------NIITTRLLVPSSEIACFEGRDGSL-SDIQRQ 474
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKT 257
+ A+V++L +E P E + ++++ GE AL V LR ++ + P+
Sbjct: 475 TSANVQILPREELPSCALESDELIQIVGEIRAARNALMQVTTKLRSYIYREMPAPIQIGG 534
Query: 258 YN--ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRY--RLS 313
N SIS + L+A + ++ PQ+ + + + S
Sbjct: 535 INVHGSISPAK-----GSPRGLYAGNDLPMP------------IYQQAPQMATSWHSKDS 577
Query: 314 GISIYGQDPALSTI----RSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
G+S G S+I R S R + P+VT+ T + IP S + G+ + I
Sbjct: 578 GLSASGSFEQGSSINDDMRQSNTKRYAVPLVTRSTLEVVIPQSAVASLSMRAGSKLAQIS 637
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITS 419
SGA +T+ E R E V I GT Q AQ L+Q ++ + ++ I S
Sbjct: 638 EMSGASVTLAEERPGVTEKVVRISGTPEQADKAQSLLQGFILSIQDDIPS 687
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP--- 136
FR++ P K G I +D+ A I + P R++ + EA
Sbjct: 111 FRILCPESKA---YGFPASFINNAQDDSGAIITIHPPFPGDPVRVIETADGTLREADGRP 167
Query: 137 --VSPAMDAAVRVFKRVSGLPENDVD---------AKASGAAFCSVRLLVPSTQAINLIG 185
SPA +A + V +R+ +D D A + RL+VP L+G
Sbjct: 168 PMFSPAQEALLMVHRRILETQPDDGDEDGEYGPRGKDARDRGKVTTRLIVPRQHVGCLLG 227
Query: 186 KQGSLIKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
K G +I+ ++ + +R+L ++ P ++ E++V++ GE V KA+ + L++
Sbjct: 228 KGGKIIEQMRSETKTHIRILPREQNMPRCLSLSEKVVQVVGEGNNVKKAVAIISDRLKES 287
Query: 245 L 245
L
Sbjct: 288 L 288
>gi|147863214|emb|CAN78372.1| hypothetical protein VITISV_006585 [Vitis vinifera]
Length = 807
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 102/194 (52%), Gaps = 20/194 (10%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P++ G + V EE+ VF+++ KVGS+IG+ G +I+ +T A IK+
Sbjct: 409 PENIGANHRMVLEEE--------VVFKLLCHFEKVGSLIGKGGSIIRXLQSETGASIKIA 460
Query: 115 DGPVSSPDRIVLISGKE-----EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFC 169
D S +R+V+IS +E E SPA DA +RV R++ + GAA
Sbjct: 461 DAAPDSDERVVVISAREACTLTNXEQKHSPAQDAVIRVHCRIAEI------GFEPGAAVV 514
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
+ RLLV S Q L+GK G +I ++ +GAS+R+ + ++ P ++++ +V++ G
Sbjct: 515 A-RLLVHSQQIGCLLGKGGIIISEMRRATGASIRIFAKEQVPKCGSQNDELVQVIGSLQS 573
Query: 230 VLKALEAVVGHLRK 243
V AL + +R+
Sbjct: 574 VQDALFCITSRIRE 587
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 36/180 (20%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-----SGKEEP 133
+FR++ P K G +IG+ G +I++ EDT A+I++ D + +R++LI K E
Sbjct: 57 LFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRIDDSVLGCDERVILIVADAVKSKREA 116
Query: 134 EA---------------------PV-------SPAMDAAVRVFKRVSGLPENDVDAKAS- 164
A PV SPA A VRVF+R+ + E + +
Sbjct: 117 SAICGAEANDGEESANLSNSSPNPVAVDDDESSPAQQALVRVFERILKVDEEREEKEKKE 176
Query: 165 --GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
G RLL PS Q ++G+ G +++ I++ SGA +RVL D P + + +++
Sbjct: 177 DLGNVAVCCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACASPGDELIQ 236
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVL 231
R+L P+T+ +IGK G++I+ +E++GA +R+ D++ + DER++ + +A K
Sbjct: 59 RILCPATKTGGVIGKGGAIIRQFREDTGAKIRI---DDS--VLGCDERVILIVADAVKSK 113
Query: 232 KALEAVVG 239
+ A+ G
Sbjct: 114 REASAICG 121
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 338 PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSS 397
P +T T + +P + + G +++ IR+ SGA + +Q+ R E V + GT
Sbjct: 727 PNITXTTVEVAVPQALLSHVYGENNSNLNQIRQISGARVVIQDPRTGSSEGVVVVSGTPD 786
Query: 398 QVQLAQQLIQEYMNNHKESIT 418
Q + AQ L+Q ++ + + + T
Sbjct: 787 QTRAAQSLVQAFILSEQMTTT 807
>gi|195440454|ref|XP_002068057.1| GK10610 [Drosophila willistoni]
gi|194164142|gb|EDW79043.1| GK10610 [Drosophila willistoni]
Length = 363
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 138/333 (41%), Gaps = 29/333 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG S
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGT------TSA 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + K+ D G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 78 IFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 137
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
S++V S ER V + G A ++ + + Q L + E
Sbjct: 138 CSIQVASE----MLPNSTERAVTLSGSAEQITQC------------IYQICLVMLESPPR 181
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
+ R L I Y T+ + ++ S G
Sbjct: 182 GATIPYRPKPQVTGPVILANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTGG 241
Query: 320 --QDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIIT 377
AL+ + S L A+ Q M + IIG GGT I IR+ SGA+I
Sbjct: 242 INHTAALAALAGSQLRTANANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIR 301
Query: 378 V---QESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
+ +E G + T+ I G V LAQ LI
Sbjct: 302 ISNCEEREGGNTDRTITISGNPDSVALAQYLIN 334
>gi|293332893|ref|NP_001169297.1| uncharacterized protein LOC100383161 [Zea mays]
gi|224028485|gb|ACN33318.1| unknown [Zea mays]
Length = 664
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 148/345 (42%), Gaps = 43/345 (12%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+FR++ P K S++ + +++ D +++ D S +R+++I+ +E P+ +
Sbjct: 340 IFRILCPNDKADSLVATRDGILEMLQTDVGVDVRLSDITSDSDERVLIITSREGPDHELF 399
Query: 139 PAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PA +A + + + L P+ D + RLLVP+++ G++GSL IQ
Sbjct: 400 PAQEAVLHIQTHIVDLGPDMD--------NIITTRLLVPASEIACFDGREGSL-SDIQRQ 450
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKT 257
+ A+V++L ++ P E + ++++ GE AL V LR FL + P+
Sbjct: 451 TSANVQILPREDLPSCALESDELIQIVGEIKAARNALIQVTTKLRSFLYREMPDPIQVGN 510
Query: 258 YN--ASIS----------QERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQ 305
N +IS Q + A H A+Q A S S S E+
Sbjct: 511 INLHGAISPVAGSPRGPYQGNDIPMGA----YHQASQLATSWHSKDSGGSASGSFEQGSN 566
Query: 306 LESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSI 365
+ IR SA R + P+VT+ T + IP S + G+ +
Sbjct: 567 IN-----------------DDIRQSATKRFAVPLVTRSTLEIVIPNSAVASLTMRAGSKL 609
Query: 366 ENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I SGA +T+ E R + V I GT Q A+ L+Q ++
Sbjct: 610 AQISEISGAAVTLAEDRSDILQKVVRISGTPEQASKAENLLQGFI 654
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLS-ADEAPFYVTEDE 218
DA+ G + RL+VP L+GK G +I+ ++ + +R+LS P V+ E
Sbjct: 180 DARDRGKT--TTRLIVPKQHVGCLLGKGGKIIEQMRMETKTHIRILSRGQHTPRCVSSSE 237
Query: 219 RIVEMQGEAAKVLKALEAVVGHLRKFL 245
+V++ G+ V KA+ + L++ L
Sbjct: 238 EVVQVVGDGNCVKKAVAIITDRLKESL 264
>gi|388500506|gb|AFK38319.1| unknown [Lotus japonicus]
Length = 437
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 160/365 (43%), Gaps = 39/365 (10%)
Query: 52 SALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARI 111
SALP +G A+ EE + RM+ P K+G +IGR G IK + + RI
Sbjct: 103 SALPVVSGGVDASQSEE---------LIIRMLCPSNKIGRVIGRGGSTIKSMRQASGTRI 153
Query: 112 KVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
+V D + + +++I+ E P S A++A + + ++S E+D + S+
Sbjct: 154 EVDDSKANHDECLIIITTTESPSDLKSMAVEAVLLIQGKISD--EDDTEV--------SI 203
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVL 231
+LLVPS +IGK GS+I I++ + A +R+ D+ DE +VE+ G V
Sbjct: 204 QLLVPSKVIGCIIGKSGSIINEIRKRTRADIRISKGDKPKCADVNDE-LVEVGGAIDCVR 262
Query: 232 KALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKS------SLHAATQSAI 285
AL ++ LR VL + +N +I E A S S+ + +
Sbjct: 263 DALIQIILRLR-----DDVLRERDTGHNPTIGGESLYSGGAAYSLPPMLPSVSSVAAPMV 317
Query: 286 STEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQ 345
+ S + S YG ++S+ + G P I
Sbjct: 318 YDQRAESATGMGMLSSSSLYGYGSLSQMWESGYG---SISSYPTKLYGSLPPPSTLDIL- 373
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQL 405
IP + ++G GG +I NIR+ SGA I + ++R D I + I GT + + A+ L
Sbjct: 374 ---IPANAVGKVLGKGGANIANIRKISGATIEISDARARGDRIAL-ISGTPEEKRAAENL 429
Query: 406 IQEYM 410
IQ ++
Sbjct: 430 IQAFI 434
>gi|110289326|gb|AAP54423.2| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 677
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 108/211 (51%), Gaps = 20/211 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI---SGKE 131
P ++R++ PV K+GS++GR G+++K + T+A+I+V D + +R+++I S +
Sbjct: 43 PIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIRVADSIPGADERVIIIFNYSSQT 102
Query: 132 EPEA------------PVSPAMDAAVRVFKRVSG---LPENDVDAKASGAAFCSVRLLVP 176
E A P A DA +++ +++ L V K+ R+LVP
Sbjct: 103 EEAAQNISTDGFEDMKPHCFAQDALLKIHDKIAADEDLHAGIVHEKSENVDDVIARILVP 162
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
Q L+GK GS+I+ ++ ++GA +RVL ++ P + + +V++ G ++ V KAL
Sbjct: 163 GNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLPQCALKSDELVQISGSSSLVRKALYE 222
Query: 237 VVGHLRKFLVDQGVLPLFEKTYNASISQERQ 267
+ L + P E+ +AS ++ Q
Sbjct: 223 ISTRLHQHPRKDN--PPLEEIIDASTQRKHQ 251
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 90/162 (55%), Gaps = 10/162 (6%)
Query: 89 VGSIIGRKGELIKKTCEDTRARIKVLD-GPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+G +IG+ G +++ + T A ++V + G +S +R++++S +E P+ PVSP ++A + +
Sbjct: 306 IGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEALILL 365
Query: 148 FKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA 207
+VS L EN + RL+VPS + +IG+ G +I ++ +GA +RV S
Sbjct: 366 HSKVSTLAENH---------HLTTRLVVPSNKVGCIIGEGGKVITEMRRRTGAEIRVYSK 416
Query: 208 DEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
+ P Y++ DE +V++ G A AL + LR + G
Sbjct: 417 ADKPKYLSFDEELVQVAGLPAIARGALTEIASRLRTRTLRDG 458
>gi|414870926|tpg|DAA49483.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 541
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 69/333 (20%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
P ++R++ PV K+GS++GR G+++K E+T+A+I+V D + +R+++I +
Sbjct: 40 PIETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNEP 99
Query: 135 APVSP------------------AMDAAVRVFKR-VSGLPENDV--DAKASGAAFCSVRL 173
P A DA +++ + VS ++V D K+ A + R+
Sbjct: 100 EPTDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEIHDEVANDEKSESADDVTARI 159
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA 233
LV Q L+GK GS+I+ ++ N+GA +RVL ++ P + + +V++ G + V KA
Sbjct: 160 LVQGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQCALKSDELVQISGAPSLVRKA 219
Query: 234 LEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPST 293
L + L + + PL E+ +AS ++R+ T + S+ S ++TP
Sbjct: 220 LYEISTRLHQHPRKEN-RPL-EEIIDASTQRKRESPTLQHEYSMLPHLHS----DHTPPI 273
Query: 294 RRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPI--VTQITQTMQIPI 351
P L R SGP VT+ T+ I I
Sbjct: 274 ----------------------------PLLDPYR-------SGPQYPVTE-TEEFSIRI 297
Query: 352 SYAEDIIG-VGGTSIENIRRT---SGAIITVQE 380
A ++IG V G S N+RR +GA I VQE
Sbjct: 298 LCASELIGSVIGKSGANVRRVEQQTGARIKVQE 330
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 10/148 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD-GPVSSPDRIVLISGKEEPEAPVS 138
R++ +GS+IG+ G +++ + T ARIKV + +S +R+++IS E P P+S
Sbjct: 295 IRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIISSNEIPAEPIS 354
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA++A + + +VS E S RL+VPS++ +IG+ G +I ++ +
Sbjct: 355 PAIEALILLHDKVSAPSEKH---------HSSTRLVVPSSKVGCIIGEGGKVITDMRRRT 405
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGE 226
GA +RV S + P Y++ D+ +V+ G+
Sbjct: 406 GAEIRVYSKADKPKYLSFDDELVQAAGQ 433
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 335 ASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKG 394
A+G ++ I ++IP S I+G GG ++ IR+ SGA + + E+ E VEI+G
Sbjct: 446 ATGRFLSTIE--LRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQG 503
Query: 395 TSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYPQLG 436
T Q + AQ L+Q +++ + Y + P YP G
Sbjct: 504 TLDQAKAAQSLLQGFISANSRQQQQPY----SSRMPLYPSWG 541
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 46/185 (24%)
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGP 117
D + P EK H R++VP KVG IIG G++I T A I+V D P
Sbjct: 365 DKVSAPSEKH------HSSTRLVVPSSKVGCIIGEGGKVITDMRRRTGAEIRVYSKADKP 418
Query: 118 --VSSPDRIVL----ISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
+S D +V I G+E+ P S A+G ++
Sbjct: 419 KYLSFDDELVQAAGQIHGREDYREPTS------------------------ATGRFLSTI 454
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG--EAAK 229
L +P++ +++G G + I++ SGA +R+ A + E +VE+QG + AK
Sbjct: 455 ELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEA-----HAGSSESVVEIQGTLDQAK 509
Query: 230 VLKAL 234
++L
Sbjct: 510 AAQSL 514
>gi|225443912|ref|XP_002278367.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
Length = 623
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 148/336 (44%), Gaps = 27/336 (8%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+ R++ P K+G +IGR G IK E + A ++V D + ++ ++ E + S
Sbjct: 308 IIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTESVDDLKS 367
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A++A + + ++ ND D ++RLLVPS +IGK GS+I I++ +
Sbjct: 368 MAVEAVLLLQAKI-----NDEDDDT-----VAIRLLVPSKIIGCIIGKSGSIINEIRKRT 417
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
A VR+ S E P ++ ++E+ GE V AL +V LR L + +
Sbjct: 418 RADVRI-SKSERPKCADANDELIEVVGEVGSVRDALVQIVLRLR-----DDALKDRDTGH 471
Query: 259 NASISQERQVETWAD---KSSLHAATQSA-ISTEYTPSTRRESLFLEREPQLESRYRLSG 314
N S + A S L +A A +S + T L G
Sbjct: 472 NTSAGTDSLYSGGAGLSVSSVLPSAPPVAPLSYDQRAETGSGLGLLSSSSLYGYGSLSVG 531
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
+ YG SS + G + T T M IP + ++G GG +I NIR+ SGA
Sbjct: 532 ENAYGS-------MSSYSSKLYGGLPTPSTFDMVIPANAVGKVMGKGGANIANIRKISGA 584
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+I + +S+ + I GT Q + A+ LIQ ++
Sbjct: 585 VIEISDSKSSRGDRVALISGTPEQKRTAENLIQAFI 620
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 165/373 (44%), Gaps = 37/373 (9%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVL 126
E+ G V+R++ P +GS+IG+ G++I +DTRA+IKV+D + DR++
Sbjct: 26 NERDEKGSDELIVYRILCPDGVIGSVIGKSGKVINSIRQDTRAKIKVVDPFPGAKDRVIT 85
Query: 127 I------------SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
I + + P+ PA DA ++V + + ++ ++L
Sbjct: 86 IYCYVKEKEEVEVDDEFNDKQPLCPAQDALLKVHAAIVNAVASLENSDKKKKDKEECQIL 145
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVL---SADEAPFYVTEDERIVEMQGEAAKVL 231
VPS+Q+ N+IGK G+ IK ++ + A++++ S D + E + V + G++ V
Sbjct: 146 VPSSQSANVIGKAGATIKRLRSKTRANIKITAKDSTDPSHSCAMEFDNFVLIAGDSEAVK 205
Query: 232 KALEAVVGHLRKFLVDQGVLPLFEKTYNA--SISQERQVETWADKSSLHAATQSAISTEY 289
KAL A+ + KF + + PL A SI V + + + S +S
Sbjct: 206 KALFAISAIMYKFTPREEI-PLDTTVPEAPPSIIIPSDVPIYP-AGGFYPSADSIVSARS 263
Query: 290 TPSTRRESLFLEREPQLESRYRL-SGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQ 348
P L P+L+ + S +Y + L + R+ I+ +
Sbjct: 264 VPPV----LAATHVPELQGYSDMGSTWPVYSSN--LPVVSGYGASRSEELIIRVLC---- 313
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQL------A 402
P +IG GG+SI+++R SGA + V +++ DE + + T S L A
Sbjct: 314 -PFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTESVDDLKSMAVEA 372
Query: 403 QQLIQEYMNNHKE 415
L+Q +N+ +
Sbjct: 373 VLLLQAKINDEDD 385
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K + G P F M++P VG ++G+ G I + + A I++ D S DR+ LIS
Sbjct: 544 KLYGGLPTPSTFDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALIS 603
Query: 129 GKEE 132
G E
Sbjct: 604 GTPE 607
>gi|148909250|gb|ABR17725.1| unknown [Picea sitchensis]
Length = 435
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 20/181 (11%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI----------- 127
V+R++ P +GS+IG+ G++IK ++TR++I+V D +R+++I
Sbjct: 43 VYRILCPSNVIGSVIGKGGKVIKSMRQETRSKIRVADAVPGVDERVIVIFSSPLSKDKEK 102
Query: 128 --SGKEEPEAPVSPAMDAAVRVFKRV---SGLPENDVDAKASGAAFCSVRLLVPSTQAIN 182
+ PV PA D +RV + S +ND D K A RLLV ++Q +
Sbjct: 103 DDDDDDNENEPVCPAQDGLLRVHSVIVQESSGKDNDADKKRPQDA----RLLVANSQIGS 158
Query: 183 LIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
LIGK G+ I+ ++ SGA +++ DE P + +V + G+AA V KAL AV L
Sbjct: 159 LIGKGGNNIQKLRSESGAQIQIPRKDELPGCAFSFDELVVISGDAAAVKKALYAVSAFLF 218
Query: 243 K 243
K
Sbjct: 219 K 219
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
IK DT A I+V D S +R++++S E + VSP ++A + + + SG + D
Sbjct: 338 IKSMRNDTGASIRVEDAQTESDERVIVVSATELADDRVSPTIEAVLLLQGKTSGTTDKD- 396
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
GA S R LVPS L+GK G++I ++ NS
Sbjct: 397 -----GA--ISTRFLVPSKHIGCLLGKGGNIISEMRANS 428
>gi|302814720|ref|XP_002989043.1| hypothetical protein SELMODRAFT_10869 [Selaginella moellendorffii]
gi|300143144|gb|EFJ09837.1| hypothetical protein SELMODRAFT_10869 [Selaginella moellendorffii]
Length = 630
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 152/357 (42%), Gaps = 43/357 (12%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFR++ P K+G+IIG+ I+ E+T A+I V D +R++++S E P+ +S
Sbjct: 288 VFRILCPSEKIGNIIGK---FIQTLQEETGAKINVPDAVPGCEERVIIVSAVESPDDDLS 344
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA +A + ++ D + RLLVPS L+GK G++I ++ ++
Sbjct: 345 PAQEAVFHIQDKLR-------DDGGETSERVVTRLLVPSNHVGCLLGKGGNIISEMRNST 397
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
A +RVL ++ P +++ +V++ GE AL + LR L EKT
Sbjct: 398 RAIIRVLDREQLPLCALDNDEVVQVLGEIRVARDALVQITSRLRANLYR-------EKTD 450
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRY-------- 310
+ ++ + L A+ I +P + L P +SR
Sbjct: 451 RSDDYGYQRSTSPLSNFGLQASQPPGIQAPRSPPSWLLQQVLIPPPSFKSRLTSFLPCLD 510
Query: 311 RLSGISIYGQDPALSTIRSSA-LGRASGPIVT---QITQTMQ--------------IPIS 352
R + + L R LGR S + Q++ ++Q IP
Sbjct: 511 RKRSLQWFATAYKLCWNREKLWLGRRSFGLADWPYQVSHSIQRHLSVVTSTKIDVLIPEV 570
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEY 409
++G G ++ I + SGA +T+ + + +EI GT Q +A+ +++ +
Sbjct: 571 TFSAVLGQNGDNLTQISKMSGAKVTLADGCTATGDRLIEISGTPDQTNIAKTVVEAF 627
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 38/201 (18%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS-------GKE 131
+FR++ P ++GS+IG+ G +IK + T A+IK+ D S +R+++I G E
Sbjct: 1 LFRILCPASRIGSVIGKGGSIIKTLRQQTGAKIKIADAIPGSDERVIIIGAFDAEGGGDE 60
Query: 132 EPEAP-------------------------VSPAMDAAVRVFKRV--SGLPENDVDAKAS 164
+ A PA A +V R+ + E+D+D S
Sbjct: 61 DYPAGSGGGAPAALDKDDRAMDEYTNGRDVACPAQLALFKVHSRILDADKYEDDLDDSDS 120
Query: 165 GAAFCS----VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERI 220
S R+LVP Q L+GK+G +I+ ++E +G+ +R+L ++ P + +
Sbjct: 121 VEEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMREETGSQIRILPREQLPVCALPTDEV 180
Query: 221 VEMQGEAAKVLKALEAVVGHL 241
V++ G+ V +AL A+ L
Sbjct: 181 VQVVGDRPSVKRALNAISTRL 201
>gi|417399455|gb|JAA46731.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 351
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 168/365 (46%), Gaps = 64/365 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGV- 250
+E++GA V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVT 179
Query: 251 LPLFEKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQL 306
+P K ++ + Q+R T +D +S TPS + P L
Sbjct: 180 IPYRPKPSSSPVIFAGGQDR-YSTGSDSASF---------PHTTPS-------MCLNPDL 222
Query: 307 ESRYRLSGISIYGQ----DPALSTIRSSALGRASGPIV-------------TQITQTMQI 349
E L +I GQ P L+ + A+ ++ P+ TQ T + I
Sbjct: 223 EGP-PLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSASLDASTQTTHELTI 281
Query: 350 PISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEY 409
P + IIG G +I IR+ SGA I + V I G+++ + LAQ LI
Sbjct: 282 PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINAR 341
Query: 410 MNNHK 414
+++ K
Sbjct: 342 LSSEK 346
>gi|224076902|ref|XP_002305041.1| predicted protein [Populus trichocarpa]
gi|222848005|gb|EEE85552.1| predicted protein [Populus trichocarpa]
Length = 623
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 173/374 (46%), Gaps = 57/374 (15%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKEEPEA- 135
V+R++ P +GS+IG+ G++I ++RAR+KV+D + R++ I + KE+ +A
Sbjct: 37 VYRILCPDEVIGSVIGKSGKVINSIRNESRARVKVVDPFPGAMYRVITIYCNVKEKGDAD 96
Query: 136 ---------PVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLI 184
P+ PA DA ++V +S D D + C ++LVP++Q+ N+I
Sbjct: 97 VDDDFHQADPLCPAQDALLKVHAAISNAVAALGDSDKRCRDKKEC--QILVPTSQSANII 154
Query: 185 GKQGSLIKSIQENSGASVRVLSADEA-PFY--VTEDERIVEMQGEAAKVLKALEAVVGHL 241
GK G+ IK ++ + A++++ + D + P + + + + + GE+ V KAL AV +
Sbjct: 155 GKAGATIKKLRSKTRANIKITAKDASDPTHSCAMDFDNFLLITGESEAVKKALFAVSAIM 214
Query: 242 RKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE 301
KF S +E +ET ++ A S I + P + +
Sbjct: 215 YKF----------------SPKEEIPLET-----TVPEAPPSIIISSDVPIYQPGGFYPN 253
Query: 302 REPQLESRYR--LSGISIYGQDPALSTIRSS-ALGRASGPIVTQITQT--------MQIP 350
+P + SR + G + + +RSS + ++ P+V T + P
Sbjct: 254 ADPIVSSRSVPPILGATHIPEFQGYGDMRSSWPIYSSTVPVVPSFGNTSRSELIIRLLCP 313
Query: 351 ISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQL------AQQ 404
+IG GG++I++IR+ SGA I V +++ DE + + T S L A
Sbjct: 314 FDKIGRVIGKGGSTIKSIRQVSGARIEVDDTKADRDECIITVIATESPDDLKSMAVEAIL 373
Query: 405 LIQEYMNNHKESIT 418
L+Q +N+ I
Sbjct: 374 LLQGKINDEDNDIV 387
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+ R++ P K+G +IG+ G IK + + ARI+V D + I+ + E P+ S
Sbjct: 307 IIRLLCPFDKIGRVIGKGGSTIKSIRQVSGARIEVDDTKADRDECIITVIATESPDDLKS 366
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A++A + + ++ ND D G +R LVPS +IGK G+++ I++ +
Sbjct: 367 MAVEAILLLQGKI-----NDEDNDIVG-----IRFLVPSKVIGCIIGKSGAIVNEIRKRT 416
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
A V + D+ + DE +VE+ GE V AL +V LR
Sbjct: 417 NADVCISKVDKLKCADSNDE-LVEVAGEVGSVRDALVQIVLRLR 459
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T M +P + +IG GG +I NIR+ SGA+I + +++ + I G Q Q A+
Sbjct: 554 TLEMLVPANAVGKVIGKGGANIANIRKISGAMIEISDAKSARGDRIAYISGKPEQKQAAE 613
Query: 404 QLIQEYM 410
LIQ ++
Sbjct: 614 NLIQAFI 620
>gi|147818880|emb|CAN73780.1| hypothetical protein VITISV_042181 [Vitis vinifera]
Length = 637
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 165/373 (44%), Gaps = 37/373 (9%)
Query: 67 EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVL 126
E+ G V+R++ P +GS+IG+ G++I +DTRA+IKV+D + DR++
Sbjct: 26 NERDEKGSDELIVYRILCPDGVIGSVIGKSGKVINSIRQDTRAKIKVVDPFPGAKDRVIT 85
Query: 127 I------------SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
I + + P+ PA DA ++V + + ++ ++L
Sbjct: 86 IYCYVKEKEEVEVDDEFNDKQPLCPAQDALLKVHAAIVNAVASLENSDKKKKDKEECQIL 145
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVL---SADEAPFYVTEDERIVEMQGEAAKVL 231
VPS+Q+ N+IGK G+ IK ++ + A++++ S D + E + V + G++ V
Sbjct: 146 VPSSQSANVIGKAGATIKRLRSKTRANIKITAKDSTDPSHSCAMEFDNFVLIAGDSEAVK 205
Query: 232 KALEAVVGHLRKFLVDQGVLPLFEKTYNA--SISQERQVETWADKSSLHAATQSAISTEY 289
KAL A+ + KF + + PL A SI V + + + S +S
Sbjct: 206 KALFAISAIMYKFTPREEI-PLDTTVPEAPPSIIIPSDVPIYP-AGGFYPSADSIVSARS 263
Query: 290 TPSTRRESLFLEREPQLESRYRL-SGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQ 348
P L P+L+ + S +Y + L + R+ I+ +
Sbjct: 264 VPPV----LAATHVPELQGYSDMGSTWPVYSSN--LPVVSGYGASRSEELIIRVLC---- 313
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQL------A 402
P +IG GG+SI+++R SGA + V +++ DE + + T S L A
Sbjct: 314 -PFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTESVDDLKSMAVEA 372
Query: 403 QQLIQEYMNNHKE 415
L+Q +N+ +
Sbjct: 373 VLLLQAKINDEDD 385
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+ R++ P K+G +IGR G IK E + A ++V D + ++ ++ E + S
Sbjct: 308 IIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTESVDDLKS 367
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A++A + + ++ ND D ++RLLVPS +IGK GS+I I++ +
Sbjct: 368 MAVEAVLLLQAKI-----NDEDDDT-----VAIRLLVPSKIIGCIIGKSGSIINEIRKRT 417
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
A VR+ S E P ++ ++E+ GE V AL +V LR
Sbjct: 418 RADVRI-SKSERPKCADANDELIEVVGEVGSVRDALVQIVLRLR 460
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 337 GPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTS 396
G + T T M IP + ++G GG +I NIR+ SGA+I + +S+ + I GT
Sbjct: 561 GGLPTPSTFDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALISGTP 620
Query: 397 SQVQLAQQLIQEYM 410
Q + A+ LIQ ++
Sbjct: 621 EQKRTAENLIQAFI 634
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K + G P F M++P VG ++G+ G I + + A I++ D S DR+ LIS
Sbjct: 558 KLYGGLPTPSTFDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALIS 617
Query: 129 GKEE 132
G E
Sbjct: 618 GTPE 621
>gi|443687982|gb|ELT90806.1| hypothetical protein CAPTEDRAFT_1308 [Capitella teleta]
Length = 333
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 148/346 (42%), Gaps = 36/346 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RMI+ + GSIIG+KG+ +KK ED+ A+I + D S P+RIV ++G
Sbjct: 4 LRMIMQGKEAGSIIGKKGDNVKKFREDSGAKINISDS--SCPERIVTVTGTT-------- 53
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKSIQ 195
D + F + E D+ + ++RL+VP++Q +LIGK G+ IK I+
Sbjct: 54 --DQIFKAFTMICKKFEEDIVNTHNSTTLPKPPVTLRLIVPASQCGSLIGKGGAKIKEIR 111
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV---------GHLRKFLV 246
E +GAS++V S ER V + G+A + + + + G +
Sbjct: 112 ELTGASIQVASE----MLPNSTERAVTVSGQADAITQCIYNICCVMLESPPKGATIPYRP 167
Query: 247 DQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQL 306
V P+ + + Q + S ATQ +S P F+ +L
Sbjct: 168 KPCVPPVMLPSSCGGQAFSIQGQQILLPPSHPNATQPDVSPHCVPLP--PPCFISLRARL 225
Query: 307 ESRYRLSGI--SIY-GQDPALSTIRSSALGRASGPIVTQITQT--MQIPISYAEDIIGVG 361
++ + I +Y G + A++ R +GP QT M IP IIG G
Sbjct: 226 QTHSLICIIIRDVYPGMNAAMAAGIPQFAPRQAGPGANMSAQTHEMTIPNDLIGCIIGRG 285
Query: 362 GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
G I IR+ SGA I + + + V I G+ + AQ +I
Sbjct: 286 GAKINEIRQLSGATIKIANADEGSSDRKVTIMGSLETIHAAQYMIN 331
>gi|195128219|ref|XP_002008562.1| GI13561 [Drosophila mojavensis]
gi|193920171|gb|EDW19038.1| GI13561 [Drosophila mojavensis]
Length = 362
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 138/332 (41%), Gaps = 28/332 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGT------TNA 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + K+ D G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 78 IFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 137
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
S++V S ER V + G A ++ + + + L + E
Sbjct: 138 CSIQVASE----MLPNSTERAVTLSGSAEQITQCIYQI------------CLVMLESPPR 181
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
+ R L I Y T+ + ++ S G
Sbjct: 182 GATIPYRPKPQVTGPVILANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMTPASTGG 241
Query: 320 -QDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
AL+ + S L A+ Q M + IIG GGT I IR+ SGA+I +
Sbjct: 242 INHTALAALAGSQLRTANANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRI 301
Query: 379 ---QESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
+E G + T+ I G V LAQ LI
Sbjct: 302 SNCEEREGGNTDRTITISGNPDSVALAQYLIN 333
>gi|413933964|gb|AFW68515.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 768
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 97/188 (51%), Gaps = 18/188 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG-KEEP 133
P ++R++ P K+GS++GR G+++K E+T+A+I+V D + +R+++I + +P
Sbjct: 40 PIETIYRILCPAKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNQP 99
Query: 134 E-----------------APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVP 176
E P A DA +++ ++ D A + + R+LV
Sbjct: 100 ELTDEAAEKQISDGLGNMKPHCFAQDALLKIHDKIVADEIYDEVAHDESSDDVTARILVQ 159
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
Q L+GK GS+I+ ++ ++GA +RVLS++ P + + +V++ G + V KAL
Sbjct: 160 GNQVGCLLGKGGSIIQQLRSDTGAGIRVLSSENLPQCALQSDELVQISGAPSLVRKALYE 219
Query: 237 VVGHLRKF 244
+ L +
Sbjct: 220 ISTRLHQH 227
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV--LDGPVSSPDRIVLISGKEEPEAPV 137
R++ +GS+IG+ G +++ + T ARIKV +D S +R++++S E P P+
Sbjct: 292 IRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG-ERLIIVSSNEIPTEPI 350
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
SP ++A + + +VS +S S RL+VPS + ++G+ G +I ++
Sbjct: 351 SPTIEALILLHDKVSA---------SSEKHHSSTRLVVPSNKVGCILGEGGQVITEMRRR 401
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+GA +RV S + P Y++ + +V++ G A AL + LR
Sbjct: 402 TGAEIRVYSKADKPKYLSFGDELVQVAGPPAIARGALTEIASRLR 446
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 330 SALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
SA GR S I ++IP S E I+GVGG ++ IR+ SGA + + E+ E
Sbjct: 673 SASGRFSSTI------ELRIPNSSLESIVGVGGVNLAEIRQISGARLRLHEAHAGSSESV 726
Query: 390 VEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYPQLG 436
VEI+GT Q + AQ L++ ++ S S Q + P YP+ G
Sbjct: 727 VEIQGTLDQAKAAQSLLEGFI-----SANSRQQQSHSSRMPLYPRWG 768
>gi|212723602|ref|NP_001132277.1| uncharacterized protein LOC100193713 [Zea mays]
gi|194693942|gb|ACF81055.1| unknown [Zea mays]
Length = 510
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 12/165 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV--LDGPVSSPDRIVLISGKEEPEAPV 137
R++ +GS+IG+ G +++ + T ARIKV +D S +R+++IS E P P+
Sbjct: 35 IRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG-ERLIIISSNEIPAEPI 93
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
SPA++A + + +VS E S RL+VPS++ +IG+ G +I ++
Sbjct: 94 SPAIEALILLHDKVSAPSEKH---------HSSTRLVVPSSKVGCIIGEGGKVITDMRRR 144
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+GA +RV S + P Y++ D+ +V++ G AL + LR
Sbjct: 145 TGAEIRVYSKADKPKYLSFDDELVQVAGPPTIARGALTEIASRLR 189
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
++IP S I+G GG ++ IR+ SGA + + E+ E VEI+GT Q + AQ L+
Sbjct: 425 LRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAAQSLL 484
Query: 407 QEYMNNHKESITSSYGQIDTGYRPSYPQLG 436
Q +++ + Y + P YP G
Sbjct: 485 QGFISANSRQQQQPY----SSRMPLYPSWG 510
>gi|413917022|gb|AFW56954.1| hypothetical protein ZEAMMB73_179405 [Zea mays]
Length = 632
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 165/352 (46%), Gaps = 42/352 (11%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE 131
P G FR++ P K+G +IGR G IK +++ ARI V D + I+ I E
Sbjct: 307 PKCSGELEFRVLCPGGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDKEESIITIISTE 366
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ S A++A + + +++ ++ ++ +RLLVP+ LIG+ GS++
Sbjct: 367 STDDVKSAAVEAVLLLQAKINDSEDDRMN----------LRLLVPNKVIGCLIGRGGSIV 416
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
+++ + A++ ++S + P + + +VE+ GEA K+ AL ++ LR+ ++ + V
Sbjct: 417 NDMRKKTKANI-LISKGDKPRRASSSDELVEVSGEADKLRDALVQIILRLREAVLKESV- 474
Query: 252 PLFEKTYNASISQERQVETWADKS---------SLHAATQSAISTEYTPSTRRESLFLER 302
++ N+ ++ Q+ A S +L Q Y E LE
Sbjct: 475 ----ESQNS--DRDGQLTVAASDSLYGSSLPLPALLPHNQQIAPLGYDRRGEPERA-LEV 527
Query: 303 EPQLESRYRLSGISI----YGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
P+ S Y S + + YG P+ ++ +A V ++ T +P S ++
Sbjct: 528 FPRTSS-YGYSSMQVTDDGYGGLPSYAS-------KAYEEHVPRLEMT--VPASGISKVM 577
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
G GT+++NIR+ SGA I + E + E I GTS Q A+ LI+ ++
Sbjct: 578 GKHGTNLDNIRKISGAHIEIIEPKSSRHEHIAYISGTSEQRHSAENLIKAFI 629
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 22/190 (11%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P ++ G ++R++ P +GS+IG+ G +I T A++KV+D + R++
Sbjct: 29 PRAQESSNNDGLVLYRILCPDSLIGSVIGKHGNVINAIRHQTSAKVKVVDPYPGADKRVI 88
Query: 126 LI---------SGKEEPEAPVSPAMDAAVRVFKRV----SGLPEN--DVDAKASGAAFCS 170
L+ + + PV A DA +RV + L +N D D K++ A
Sbjct: 89 LVYCYVKHRDLDAEGDDNEPVCAAQDALLRVHNAIVDALQTLHKNHKDSDKKSTEEA--- 145
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEA-PFY--VTEDERIVEMQGEA 227
+LVP++QA N+IGK G++IK ++ S A ++V D + P + + V++ G A
Sbjct: 146 -NILVPASQASNVIGKSGAVIKHLRSTSRAFIKVSPKDPSDPTHSCAMSFDNFVQITGGA 204
Query: 228 AKVLKALEAV 237
V KAL V
Sbjct: 205 EAVKKALFGV 214
>gi|357146815|ref|XP_003574121.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 777
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 109/216 (50%), Gaps = 26/216 (12%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI------- 127
P V+R++ P K+GS++GR G ++K E+T+A+I+V D + +R+++I
Sbjct: 43 PIETVYRILCPGKKIGSVLGRGGHIVKALREETKAKIRVADSIPGAEERVIIIFDYQDQS 102
Query: 128 -------------SGKEEPEAPVSPAMDAAVRVFKRVSGLPE---NDVDAKASGAAFCSV 171
G E + A DA +++ ++S + + K+ AA +
Sbjct: 103 EQTDEAAQNISNNDGSENMKLQCF-AQDALLKIHDKISTHEDPHDGAIHEKSETAADVTA 161
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVL 231
R+LVP Q L+GK GS+I+ ++ ++GA +R+L + + P + + +V++ G + V
Sbjct: 162 RILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRILPSQDLPQCALQSDELVQISGAPSLVR 221
Query: 232 KALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQ 267
KAL + L + + P E+ +AS ++R+
Sbjct: 222 KALYEISTRLHQHPRKEN--PPLEEIIDASTQRKRE 255
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 27/242 (11%)
Query: 18 DPQPETATTESPTTESEAPPTIGSENTEHTTESDSALP-------QSTGPDAAAVPEEKK 70
+P E S + E+PP + EN + LP + P VPE ++
Sbjct: 239 NPPLEEIIDASTQRKRESPPPLPHENLMLPYQHVDRLPPMPLLDPYRSRPSQYPVPEAEE 298
Query: 71 WPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV--LDGPVSSPDRIVLIS 128
+ R++ +G +IG+ G +++ + T ARI V LD S +R++++S
Sbjct: 299 F-------SVRILCASELIGPVIGKSGANVRQVEQQTGARILVQELDKDASG-ERLIVLS 350
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
KE P PVSPA++A + + +VS +S RL+VPS++ ++G+ G
Sbjct: 351 SKEIPGDPVSPAIEALILLHSKVSA---------SSEKRHLITRLVVPSSKVGCILGEGG 401
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR-KFLVD 247
+I ++ GA +RV S + P Y++ DE +V++ G AL + LR + L D
Sbjct: 402 KVITEMRRRIGAEIRVYSKADKPKYLSFDEELVQVAGPPDIARDALTEIASRLRTRTLRD 461
Query: 248 QG 249
G
Sbjct: 462 GG 463
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
+ IP S ++G GG ++ IR+ SGA + + E E +EI+G QV+ AQ L+
Sbjct: 691 LMIPNSSLGSVLGAGGVNLAEIRQISGARMKLLEGHPGSSESIMEIQGMPDQVRAAQSLL 750
Query: 407 QEYM 410
Q ++
Sbjct: 751 QGFI 754
>gi|115475229|ref|NP_001061211.1| Os08g0200400 [Oryza sativa Japonica Group]
gi|38636959|dbj|BAD03220.1| putative KH domain protein [Oryza sativa Japonica Group]
gi|113623180|dbj|BAF23125.1| Os08g0200400 [Oryza sativa Japonica Group]
gi|215695475|dbj|BAG90642.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 441
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 157/346 (45%), Gaps = 30/346 (8%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE 131
P G V R++ P K+G +IG+ G IK +++ ARI V D + I+ I+ E
Sbjct: 116 PKCSGELVLRVLCPAGKIGLVIGKGGVTIKSIRKESGARIDVDDSKNDREESIITITSNE 175
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ S A++A + + +++ +D + K ++RLLVP LIGK GS++
Sbjct: 176 ATDDAKSAAVEAVLLLQSKIN----DDNEGK------MNLRLLVPGKVIGCLIGKGGSIV 225
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
++ + A++ + S E P + + +VE+ GE + AL +V LR ++ V
Sbjct: 226 NDMRSKTKAAIYI-SKGEKPRKASSSDELVEVFGEVENLRDALVQIVLRLRDDVLRDSV- 283
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSA-----ISTEYTPSTRRESLFLEREPQL 306
+ S++ T A L+A++ + TP +ER ++
Sbjct: 284 -------DRQNSEKDGKLTVATTDPLYASSYPLPALLPYRQQITPLGYDHRGDIERGLEV 336
Query: 307 ESRYRLSGIS-IYGQDPALSTIRSSA-LGRASGPIVTQITQTMQIPISYAEDIIGVGGTS 364
L G S + D S + S A G P ++T IP S ++G GT+
Sbjct: 337 YPHSSLYGYSSLQAIDDGYSAVSSYASKGYGGRPPHMEMT----IPASGLSKVMGKHGTN 392
Query: 365 IENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
++NI + SGA I + ES+ I GT+ Q Q A+ LI+ ++
Sbjct: 393 LDNIIKISGAHIEIIESKSSRHGHVARISGTTEQKQSAENLIKAFI 438
>gi|356528013|ref|XP_003532600.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 167
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEP 133
+ H FR++ +VG+IIG+ G LIK E T A+I+++D P SPDR++L+S
Sbjct: 21 YTTHVTFRLLCHASRVGAIIGKSGVLIKSLQEATGAKIRIVDAPPDSPDRVILVSAPSVT 80
Query: 134 E-APVSPAMDAAVRVFKRVSGLPENDVDAKAS-GAAFCSVRLLVPSTQAINLIGKQGSLI 191
E +S A +A ++VF RV DV A G S RLL ++Q +IGK G ++
Sbjct: 81 EDGELSTAQEALLKVFDRVL-----DVAAGTEVGDLVVSCRLLAETSQVGAVIGKAGKVV 135
Query: 192 KSIQENSGASVRVLS 206
+ I+ ++G +RVL+
Sbjct: 136 EKIRMDTGCKIRVLN 150
>gi|384253488|gb|EIE26963.1| hypothetical protein COCSUDRAFT_59455 [Coccomyxa subellipsoidea
C-169]
Length = 648
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 137/302 (45%), Gaps = 31/302 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
+R++ P ++G++IG+ G +I++ + T ARIKV +R++ +S +EP A +
Sbjct: 33 YRLLCPATRIGTVIGKGGSVIQQMRDSTGARIKVEPEVAGCSERLISLSSSDEPGAELCR 92
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A +A V R+S + DA A C VR+LV Q ++GK G +I ++ +G
Sbjct: 93 AQEALFAVQSRLS-----EADA-AQEDTCCVVRMLVEQAQVGCVLGKGGEVISDLRRRTG 146
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
A++RV + P ++ +V ++GEA V AL + LR
Sbjct: 147 ANIRVSDKRDLPACAGSEDSLVAVKGEAQAVSDALRQLSALLRTH--------------- 191
Query: 260 ASISQERQVETWADKS-SLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
SQ + + A + ++ A +A+ E RR+ + REP L R
Sbjct: 192 ---SQRKPQQARAPMTFNITAVATAAVQPEQA-QHRRQPM---REPVLAPIARPHQCHNC 244
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
D R +A+ AS V ++ + +P ++ +IG G I IR +GA I V
Sbjct: 245 LPDAHAMQPRMTAVQEASA--VVEVQLRLLVPATHIGCVIGRRGEMIRTIRDDTGAHIKV 302
Query: 379 QE 380
E
Sbjct: 303 HE 304
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 173/388 (44%), Gaps = 82/388 (21%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDG-------PVSSP---DRIVLISG 129
R++VP +G +IGR+GE+I+ +DT A IKV +G P S DR++ ++
Sbjct: 269 LRLLVPATHIGCVIGRRGEMIRTIRDDTGAHIKVHEGSQGARAFPPSEKKGVDRVITVAA 328
Query: 130 KEEPEAPVSPAMDAAVRVFKRV---SGLPENDVDAKASGAAFCSVRLLVPSTQ-----AI 181
E A VSP +A + + SGLP +R+LVP+ Q A+
Sbjct: 329 AEAAGAAVSPTEEAVCLMALCLLGPSGLPPVP-----------CIRILVPTPQGGTAEAL 377
Query: 182 NLI------GKQGSLIKSIQENSGASVRVLSAD-EAPFYVTED------ERIVEMQGEAA 228
+L+ GK G+ I ++++SGA VR++ + E ++ D ++V+++G
Sbjct: 378 SLLQVGGVLGKGGATITQVRKDSGAGVRLVPLEAEDDRWLPRDVAAGQMHKVVQIEGPIT 437
Query: 229 KVLKALEAVVGHLRKFLV-DQGVLPLFEKT--YNASISQERQVETWADKSSLHAATQSAI 285
+KA+ AV LR + QG P E T Y + + ++ H Q+ +
Sbjct: 438 ATVKAVRAVCAQLRAWQARSQGAQPARELTEAYGGAHAPQQ----------FHPMHQAML 487
Query: 286 STEYTPSTRRESL----------------FLEREPQLESRY--RLSGISIYGQDPALSTI 327
E P R L ER P L+ R+ L +S D A+S
Sbjct: 488 PRETAPGLRGRGLPDLSRAEMGMYDSPLRHCER-PVLQLRHPLDLQVLSRGQMDRAMS-- 544
Query: 328 RSSALGRASGPIVTQITQTMQIPISYAE----DIIGVGGTSIENIRRTSGAIITVQES-R 382
+ + + + +VT QT + ++G G +I IR+ SGA + + ++ R
Sbjct: 545 QPLMMQQVTQQVVTAPDQTQSCELRLVGVQVGCVLGKAGENITQIRKISGARVKLSDAPR 604
Query: 383 GLPDEITVEIKGTSSQVQLAQQLIQEYM 410
G+ + + + + GT QVQ A L+Q ++
Sbjct: 605 GVTERL-LRLSGTCEQVQAAVNLVQAFL 631
>gi|359386146|gb|AEV43362.1| poly C-binding protein [Citrus sinensis]
Length = 569
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 29/188 (15%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG----- 129
P V+R++ P K+G +IG+ G ++K E+T+A+I V D S +R+++I
Sbjct: 44 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 103
Query: 130 --------------KEEPEAPVSPAMDAAVRVFKRV------SGLPENDVDAKASGAAFC 169
K+E P A DA ++V R+ G+ +D + ++ A
Sbjct: 104 AKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA-- 161
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
RLLVP+ L+GK+G +I+ ++ +GA++RVL AD P + +V++ G+
Sbjct: 162 --RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNV 219
Query: 230 VLKALEAV 237
+AL V
Sbjct: 220 AKRALYEV 227
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 105/234 (44%), Gaps = 29/234 (12%)
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
+K+ ++T A I V D P S +R++ S E P S +DA +++ + S E
Sbjct: 339 VKQLQQETGASIHVEDAPTDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGT 398
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA-----DEAPFYV 214
+ RLLVPS++ ++G+ G +I ++ + A +RV+ A D P
Sbjct: 399 ---------ITTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHP--- 446
Query: 215 TEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADK 274
E IV+++G + ++ A G + F+ + + +Y Q+ +T
Sbjct: 447 GSSECIVDIRGSSEHLISAH----GTYQSFMTSGQSMKVQPSSYQNINPQQSSCQTM--- 499
Query: 275 SSLHAATQSAISTEYTPSTR---RESLFLEREPQLESRYRLSGISIYGQDPALS 325
S H ++ ++T+ +P R ++S + PQ +S Y + G +P ++
Sbjct: 500 -SSHQSSYQNMNTQQSPYHRVNAQQSPYQNINPQ-QSSYPMHTHQGAGTNPHIT 551
>gi|357124311|ref|XP_003563844.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 666
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 158/358 (44%), Gaps = 31/358 (8%)
Query: 69 KKWPGWP-GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
+ P +P +FR++ P K +++G + +++ + +++ D V S +R V+I
Sbjct: 332 NEHPEFPYDEIIFRILCPNDKANNLVGSRDGILEMLQVEVGVDVRLTDLVVGSDERTVII 391
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGK 186
+ +E P+ + PA +A + + + L P+ND + RLLVPS++ G+
Sbjct: 392 TSREGPDHELFPAQEALLHIQTHIVDLGPDND--------NIITTRLLVPSSEVACFEGR 443
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
GSL IQ + A+V++L +E P E + ++++ G AL V +R ++
Sbjct: 444 DGSL-SDIQRQTSANVQILPREELPSCALESDELIQIVGGIRAARSALMQVTTKIRSYIY 502
Query: 247 DQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQL 306
+ +P Q+ + S+ A S P ++ Q+
Sbjct: 503 REMSVP-------------NQIASINVHGSIPPANGSPRGI--YPGNDLPMAIYQQSQQM 547
Query: 307 ESRY--RLSGISIYGQDPALSTIRS---SALGRASGPIVTQITQTMQIPISYAEDIIGVG 361
+ + + SG S G S I S + R + P+VT+ T + IP S +
Sbjct: 548 TTSWHSKDSGGSASGSFEQGSNINDDIRSTIKRFAVPLVTRSTLEVVIPKSAVASLSMRA 607
Query: 362 GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITS 419
G+ + I SGA +T+ E R E V I GT Q AQ L+Q ++ + ++ I S
Sbjct: 608 GSKLAQISEMSGASVTLGEDRPGVMEKVVRISGTPEQADKAQSLLQGFILSIQDDIPS 665
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 18/181 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG---KEEPEAP 136
FR++ P K G I K +D+ A I + P R++ ++ ++ P
Sbjct: 95 FRILCPESKT---YGFPASFIIKAQDDSGAIITIHAPFAGDPVRVIEMADGVPRDVDGRP 151
Query: 137 --VSPAMDAAVRVFKRVSGLPENDVD---------AKASGAAFCSVRLLVPSTQAINLIG 185
SPA +A + V +R+ +D D A + RL+VP L+G
Sbjct: 152 PMFSPAQEALIMVHRRILETEPDDGDEDGEYGPRGKDARDRGKVTTRLVVPRLHVGCLLG 211
Query: 186 KQGSLIKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
K G +I+ ++ + +R+L D+ P V+ E +V++ GE V KA+ + L++
Sbjct: 212 KGGKIIEQMRSETKTHIRILPRDQNTPRCVSLSEEVVQIVGEGNCVKKAVAIISDRLKES 271
Query: 245 L 245
L
Sbjct: 272 L 272
>gi|432931639|ref|XP_004081713.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Oryzias
latipes]
Length = 343
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 154/340 (45%), Gaps = 29/340 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 18 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 67
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
D + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK +
Sbjct: 68 --DTIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEM 125
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 126 RESTGAQVQV-AGDMLP---NSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYR 181
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + + + + + + P+ + + P L ++L+
Sbjct: 182 PKPASTPVIFSGGQVSAELLKTTLTPNLTLLMQQKCPAYTIQGQYAIPHPDLTKLHQLA- 240
Query: 315 ISIYGQDP--ALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTS 372
Q P L + G + P + T + IP IIG GT I IR+ S
Sbjct: 241 ---MQQTPFTPLGQTTPAFPGLDAAPPAS--THELTIPNDLIGCIIGRQGTKINEIRQMS 295
Query: 373 GAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
GA I + + E + I GT + + LAQ LI + +
Sbjct: 296 GAQIKIANAMEGSSERQITITGTPANISLAQYLINARLTS 335
>gi|242039239|ref|XP_002467014.1| hypothetical protein SORBIDRAFT_01g018300 [Sorghum bicolor]
gi|241920868|gb|EER94012.1| hypothetical protein SORBIDRAFT_01g018300 [Sorghum bicolor]
Length = 542
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 113/215 (52%), Gaps = 25/215 (11%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDR--IVLISGKEE 132
P ++R++ PV K+GS++GR G+++K E+T+A+I+V D P+ D I++ + + +
Sbjct: 40 PVETIYRILCPVKKIGSVLGRGGDVVKALREETKAKIRVAD-PIPGADERVIIIFNYQNQ 98
Query: 133 PE-----------------APVSPAMDAAVRVFKRVSGLPEND---VDAKASGAAFCSVR 172
PE P A DA +++ ++ +D + K+ A + R
Sbjct: 99 PELTDEAAETKFSDGLGNMKPHCFAQDALLKIHDKIVADEIHDGVAHEEKSESADDVTAR 158
Query: 173 LLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLK 232
+LV Q L+GK GS+I+ ++ ++GA +RVL +++ P + + +V++ G + V K
Sbjct: 159 ILVQGNQVGCLLGKGGSIIQQLRSDTGAGIRVLPSEDLPQCALKSDELVQISGAPSLVRK 218
Query: 233 ALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQ 267
AL + L + + PL E+ NAS ++R+
Sbjct: 219 ALYEISTRLHQHPRKEN-RPL-EEIINASTQRKRE 251
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 84/148 (56%), Gaps = 10/148 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD-GPVSSPDRIVLISGKEEPEAPVS 138
R++ +GS+IG+ G +K+ + T ARIKV + +S + ++++S KE P P+S
Sbjct: 296 IRILCASELIGSVIGKSGANVKRVEQQTGARIKVQEIDKDASGESLIIVSSKEVPSEPIS 355
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA++A + + +VS E S RL+VPS++ ++G+ G +I ++ +
Sbjct: 356 PAIEALILLHDKVSAPSEK---------RHSSTRLVVPSSKVGCILGEGGKVITEMRRRT 406
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGE 226
GA +RV S + P Y++ D+ +V+ G+
Sbjct: 407 GAEIRVYSKADKPKYLSFDDELVQTAGQ 434
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T ++IP S E I+GVGG ++ IR+ SGA + + E+ E VEI+GT + + AQ
Sbjct: 453 TIELRIPNSSLESIVGVGGVNLAEIRQISGARLRLHEAHAGSSESVVEIQGTLEEAKAAQ 512
Query: 404 QLIQEYMNNHKESITSSYGQIDTGYRPSYPQLG 436
L+Q +++ + SI Q + P YP G
Sbjct: 513 SLLQGFISANSRSIQQ---QPQSSRMPLYPSWG 542
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 31/177 (17%)
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
D + P EK+ H R++VP KVG I+G G++I + T A I+V S
Sbjct: 366 DKVSAPSEKR------HSSTRLVVPSSKVGCILGEGGKVITEMRRRTGAEIRVY----SK 415
Query: 121 PDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS-VRLLVPSTQ 179
D+ +S +E V+ ++ G D S F S + L +P++
Sbjct: 416 ADKPKYLSFDDE-----------LVQTAGQIHG--REDYRGLTSATGFLSTIELRIPNSS 462
Query: 180 AINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG--EAAKVLKAL 234
+++G G + I++ SGA +R+ A + E +VE+QG E AK ++L
Sbjct: 463 LESIVGVGGVNLAEIRQISGARLRLHEA-----HAGSSESVVEIQGTLEEAKAAQSL 514
>gi|297791069|ref|XP_002863419.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297309254|gb|EFH39678.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 643
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 170/377 (45%), Gaps = 37/377 (9%)
Query: 54 LPQSTGPDAA---------AVPEEKKWPGWPG--HCVFRMIVPVLKVGSIIGRKGELIKK 102
LPQ G AA A+P + G V ++I K+G +IG+ G IK
Sbjct: 281 LPQGYGESAANPMPVFSASALPVVHGFGGSSKSEKLVIKVICSSSKIGRVIGKGGSTIKG 340
Query: 103 TCEDTRARIKVLDGPVSSPDRIVL-ISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA 161
+ + + I+V D + D V+ ++ E P+ S A++A + + +++ ND D
Sbjct: 341 IRQASGSHIEVNDSRANHDDDCVITVTATESPDDLKSMAVEAVLLLQEKI-----NDEDE 395
Query: 162 KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ ++LLVPS +IGK GS+I I++ + A++ + + P ++ +V
Sbjct: 396 EK-----VKMQLLVPSKVIGCIIGKSGSIISEIRKRTKANIHISKGNNKPKCADPNDELV 450
Query: 222 EMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAAT 281
E+ GE + V AL +V LR + L ++ + + E SS + T
Sbjct: 451 EISGEVSDVRDALIQIVLRLRDDV-------LRDREIGSRNQPPARSENNNFFSSGSSNT 503
Query: 282 QSAISTEYTPST-RRESLFLEREPQLESRYRL----SGISIYGQDPALSTIRSSALGRAS 336
A+ + + S + S+ +R P+ S + G+ YG P + S +S
Sbjct: 504 GLALPSSFMSSVPQVASVDFDRRPETGSSMSMLPSSGGLYGYGSFPVGNNSYGSKSSYSS 563
Query: 337 ---GPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIK 393
G + T ++IP + ++G GG +++NIRR SGA+I + +S+ I
Sbjct: 564 NLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRIALIS 623
Query: 394 GTSSQVQLAQQLIQEYM 410
GT Q + A+ L Q ++
Sbjct: 624 GTPEQKRTAENLFQAFI 640
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 170/377 (45%), Gaps = 65/377 (17%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKEEPEA- 135
V+R++ P +GS+IG+ G++I ++TRARIKV+D +R++ I S E+ +
Sbjct: 44 VYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVTEKKDII 103
Query: 136 -----------PVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINL 183
P+ A DA ++V V+ L + K RLLVPS+Q N+
Sbjct: 104 DIEHSELNYSIPLCSAQDALLKVHDAIVASLATAAENTKIDRDDIRECRLLVPSSQCSNV 163
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEA-PFYVT--EDERIVEMQGEAAKVLKALEAVVGH 240
IGK GS+IK I+ + A+V+V+S D + P + + + IV + GE+ V KAL AV
Sbjct: 164 IGKSGSIIKKIRSRTRANVKVVSKDVSDPSHTCAMDFDNIVLISGESESVKKALFAVSAI 223
Query: 241 LRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTR----RE 296
+ K +S Q+ L Q ++ PS +
Sbjct: 224 MYK------------------VSPREQIP-------LDTTVQEVPASIIIPSDLSIYPQG 258
Query: 297 SLFLEREPQLESRYRLSGI-----SIYGQDPA--LSTIRSSALGRASGPIVTQITQTMQI 349
L+ ++P + +S YG+ A + +SAL G + ++ + I
Sbjct: 259 GLYPNQDPIFQHGANVSSFIGTLPQGYGESAANPMPVFSASALPVVHGFGGSSKSEKLVI 318
Query: 350 PI----SYAEDIIGVGGTSIENIRRTSGAIITVQESRG-LPDEITVEIKGTSSQVQL--- 401
+ S +IG GG++I+ IR+ SG+ I V +SR D+ + + T S L
Sbjct: 319 KVICSSSKIGRVIGKGGSTIKGIRQASGSHIEVNDSRANHDDDCVITVTATESPDDLKSM 378
Query: 402 ---AQQLIQEYMNNHKE 415
A L+QE +N+ E
Sbjct: 379 AVEAVLLLQEKINDEDE 395
>gi|22328051|ref|NP_201244.2| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010501|gb|AED97884.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 857
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 39/226 (17%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
GH FR++ P+ VG++IG+ G +IK+ + T A+I+V + P SPDR++ I + + ++
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 136 PV---------------------SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
V S A A ++VF+ ++ ++D C RLL
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT-------VVC--RLL 155
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S+ A +IGK G ++ SI++ +G + + + P D+ +VE++G A V KAL
Sbjct: 156 TESSHAGAVIGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKAL 214
Query: 235 EAVVGHLRKFL-VDQ----GVLPLFEKTYNASISQERQVETWADKS 275
++ L+ +D+ G PL EK + AS+ R +ET +S
Sbjct: 215 VSISRCLQNCQSIDKVRMVGNRPL-EKEFQASL--HRPIETIIQES 257
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 118/226 (52%), Gaps = 7/226 (3%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ G +IG G++++ +T A I V + +R++ ++ E PE S
Sbjct: 453 VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSS 512
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA A + +F R+ L N + ++ + RL+VP++Q ++GK G ++ +++ +
Sbjct: 513 PAQKAIMLIFSRLFELATNKILDNGPRSSI-TARLVVPTSQIGCVLGKGGVIVSEMRKTT 571
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
GA++++L ++ P ++E++++V++ GE V +A+ + LR + + K+
Sbjct: 572 GAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSS 631
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPST----RRESLFL 300
+A ++ ER + +D + L + ++S T S+ R E FL
Sbjct: 632 SA-LTTERFYDRQSD-NPLSIGSHQSVSNPATNSSSLHRRSEDSFL 675
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 339 IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQE-SRGLPDEITVEIKGTSS 397
IVT T +++P + + G G ++E +R+ SGA + + E G D I V I GT
Sbjct: 772 IVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIV-ISGTPD 830
Query: 398 QVQLAQQLIQEYMNNHKESITSSY 421
Q Q AQ L+ ++ + S++ Y
Sbjct: 831 QTQAAQNLLHAFILTGETSLSKKY 854
>gi|334188619|ref|NP_001190612.1| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010502|gb|AED97885.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 866
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 39/226 (17%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
GH FR++ P+ VG++IG+ G +IK+ + T A+I+V + P SPDR++ I + + ++
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 136 PV---------------------SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
V S A A ++VF+ ++ ++D C RLL
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT-------VVC--RLL 155
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S+ A +IGK G ++ SI++ +G + + + P D+ +VE++G A V KAL
Sbjct: 156 TESSHAGAVIGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKAL 214
Query: 235 EAVVGHLRKFL-VDQ----GVLPLFEKTYNASISQERQVETWADKS 275
++ L+ +D+ G PL EK + AS+ R +ET +S
Sbjct: 215 VSISRCLQNCQSIDKVRMVGNRPL-EKEFQASL--HRPIETIIQES 257
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 118/226 (52%), Gaps = 7/226 (3%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ G +IG G++++ +T A I V + +R++ ++ E PE S
Sbjct: 453 VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSS 512
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA A + +F R+ L N + ++ + RL+VP++Q ++GK G ++ +++ +
Sbjct: 513 PAQKAIMLIFSRLFELATNKILDNGPRSSI-TARLVVPTSQIGCVLGKGGVIVSEMRKTT 571
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
GA++++L ++ P ++E++++V++ GE V +A+ + LR + + K+
Sbjct: 572 GAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSS 631
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPST----RRESLFL 300
+A ++ ER + +D + L + ++S T S+ R E FL
Sbjct: 632 SA-LTTERFYDRQSD-NPLSIGSHQSVSNPATNSSSLHRRSEDSFL 675
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 339 IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQE-SRGLPDEITVEIKGTSS 397
IVT T +++P + + G G ++E +R+ SGA + + E G D I V I GT
Sbjct: 781 IVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIV-ISGTPD 839
Query: 398 QVQLAQQLIQEYMNNHKESITSSY 421
Q Q AQ L+ ++ + S++ Y
Sbjct: 840 QTQAAQNLLHAFILTGETSLSKKY 863
>gi|158293685|ref|XP_557579.3| AGAP004942-PA [Anopheles gambiae str. PEST]
gi|157016566|gb|EAL40201.3| AGAP004942-PA [Anopheles gambiae str. PEST]
Length = 382
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 147/344 (42%), Gaps = 30/344 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + D S P+RIV +SG + +
Sbjct: 24 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD--CSCPERIVTVSGSR---SAIYK 78
Query: 140 AMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A + F+ S +N A G +RL+VP++Q +LIGK GS IK I+E +
Sbjct: 79 AFTLITKKFEEWCSQFQDN---ANTQGKPQIPIRLIVPASQCGSLIGKGGSKIKEIREIT 135
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK-- 256
G S++V S ER V + G A + + + + + + +P K
Sbjct: 136 GCSIQVASE----MLPNSTERAVTLSGSAEAITQCIYHICCVMLESPPKGATIPYRPKPQ 191
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQL-----ESRYR 311
I Q T ++ A S I+ L +Y
Sbjct: 192 VNGPVIVANGQAYTIQGNYAVPAQEVSGIAKNPLAGLAALGLAGAIPSNTGGLNPTGKYS 251
Query: 312 LSGISIYGQDPALSTIRSSAL----GRASGPIVTQITQTMQIPISYAEDIIGVGGTSIEN 367
Y AL+ + S L R P+ +Q + M +P IIG GGT I
Sbjct: 252 SPNALEYIPHAALAALAGSQLRTNNNRNVAPVQSQ-SHEMTVPNDLIGCIIGKGGTKIAE 310
Query: 368 IRRTSGAIITV----QESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
IR+ SGA+I + + G D T+ I G V LAQ LI
Sbjct: 311 IRQISGAMIRISNCEERDSGNTDR-TITITGNPDSVALAQYLIN 353
>gi|357485457|ref|XP_003613016.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355514351|gb|AES95974.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 596
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE-- 131
PG FR++ VG +IG G ++ + +T +I D V + DR++L+ G
Sbjct: 35 LPGQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSD 94
Query: 132 -------EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLI 184
+ E VS A + VRVF RV GL +++ G +LL S+Q ++
Sbjct: 95 RKGIVLGDREMEVSNAQEGVVRVFDRVWGL-----ESEKGGNGEVYGKLLAHSSQVGAIV 149
Query: 185 GKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
GK G I +I+ NSG+++RV AP +DE ++ + GE+ V KAL
Sbjct: 150 GKGGKNISNIRNNSGSNIRVC---PAPHCAAKDEELILITGESLAVKKAL 196
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 153/350 (43%), Gaps = 46/350 (13%)
Query: 76 GHCV-FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS-PDRIVLISGKEEP 133
GH V FR++ GS+IG+KG +++ T A I V P+ +RIV IS E
Sbjct: 272 GHAVVFRLLCSNNVAGSVIGKKGSIVRTFEIRTGASI-VFAPPLGQYEERIVTISAFENL 330
Query: 134 EAPVSPAMDAAVRVFKRVS-GLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
E+ SPA DA + VF R++ N + + + RLL+ ++ L G +G +I
Sbjct: 331 ESSNSPAQDAVILVFTRIAEDHIRNGFQPATAVESPVTARLLITTSTLHLLTGNEGQVIS 390
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR------KFLV 246
+++ SGA +++L + P ++++ +V++ G V AL + +R + L
Sbjct: 391 ELRQVSGADIQLLHGEPIP-NASDNDVVVQITGGYRCVENALRKITSIIRDNPLTNELLA 449
Query: 247 DQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQL 306
+ + P F + + +++ + F PQ
Sbjct: 450 EAKIKPSF------------------------PLNKDTVRSKFITRKKSSFPFARVPPQN 485
Query: 307 ESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGV----GG 362
Y+ ++ G+ + I + GR G IV +T T + I +E + G G
Sbjct: 486 AGVYQAKKVTENGESHT-NLIENVEPGR--GNIVATVTNTT-VEIIVSEHVFGSVYGEDG 541
Query: 363 TSIENIRRTSGAIITVQE--SRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+++ IR+ SGA +TV + S G V I GT Q AQ L+Q ++
Sbjct: 542 GNLDRIRQISGADVTVFDPSSTGTSGGKVV-ISGTPDQTFAAQSLLQAFI 590
>gi|348511523|ref|XP_003443293.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 321
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 151/340 (44%), Gaps = 51/340 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 18 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 67
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
D + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK +
Sbjct: 68 --DTIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEM 125
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ + + + + +P
Sbjct: 126 RESTGAQVQV-AGDMLP---NSTERAVTISGTPEAIIQCVRQICVVMLESPPKGATIPYR 181
Query: 255 EK-TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLS 313
K T I Q T + ++ Q T+ L +++ P
Sbjct: 182 PKPTSTPVIFSGGQAYTIQGQYAIPHPDQ---------LTKLHQLAMQQTP--------- 223
Query: 314 GISIYGQ-DPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTS 372
+ GQ PA + +S T + IP IIG GT I IR+ S
Sbjct: 224 -FTPLGQTTPAFPGLDASPPAS---------THELTIPNDLIGCIIGRQGTKINEIRQMS 273
Query: 373 GAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
GA I + + E + I GT + + LAQ LI + +
Sbjct: 274 GAQIKIANAMEGSSERQITITGTPANISLAQYLINARLTS 313
>gi|28261403|gb|AAO37828.1| HEN4 [Arabidopsis thaliana]
Length = 869
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 39/226 (17%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
GH FR++ P+ VG++IG+ G +IK+ + T A+I+V + P SPDR++ I + + ++
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 136 PV---------------------SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
V S A A ++VF+ ++ ++D C RLL
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT-------VVC--RLL 155
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S+ A +IGK G ++ SI++ +G + + + P D+ +VE++G A V KAL
Sbjct: 156 TESSHAGAVIGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKAL 214
Query: 235 EAVVGHLRKFL-VDQ----GVLPLFEKTYNASISQERQVETWADKS 275
++ L+ +D+ G PL EK + AS+ R +ET +S
Sbjct: 215 VSISRCLQNCQSIDKVRMVGNRPL-EKEFQASL--HRPIETIIQES 257
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 117/226 (51%), Gaps = 7/226 (3%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ G +IG G++++ +T A I V + +R++ ++ E PE S
Sbjct: 465 VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNALDDCEERLIAVTASENPECQSS 524
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA A + +F R+ L N + ++ + RL+VP++Q ++GK G ++ +++ +
Sbjct: 525 PAQKAIMLIFSRLFELATNKILDNGPRSSI-TARLVVPTSQIGCVLGKGGVIVSEMRKTT 583
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
GA++++L ++ P ++E++++V++ E V +A+ + LR + + K+
Sbjct: 584 GAAIQILKVEQNPKCISENDQVVQITEEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSS 643
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPST----RRESLFL 300
+A ++ ER + +D + L + ++S T S+ R E FL
Sbjct: 644 SA-LTTERFYDRQSD-NPLSIGSHQSVSNPATNSSSLHRRSEDSFL 687
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 339 IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQE-SRGLPDEITVEIKGTSS 397
IVT T +++P + + G G ++E +R+ SGA + + E G D I V I GT
Sbjct: 784 IVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIV-ISGTPD 842
Query: 398 QVQLAQQLIQEYMNNHKESITSSYG 422
Q Q AQ L+ ++ + S++ Y
Sbjct: 843 QTQAAQNLLHAFILTGETSLSKKYN 867
>gi|413933965|gb|AFW68516.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 537
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 97/188 (51%), Gaps = 18/188 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG-KEEP 133
P ++R++ P K+GS++GR G+++K E+T+A+I+V D + +R+++I + +P
Sbjct: 40 PIETIYRILCPAKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNQP 99
Query: 134 E-----------------APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVP 176
E P A DA +++ ++ D A + + R+LV
Sbjct: 100 ELTDEAAEKQISDGLGNMKPHCFAQDALLKIHDKIVADEIYDEVAHDESSDDVTARILVQ 159
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
Q L+GK GS+I+ ++ ++GA +RVLS++ P + + +V++ G + V KAL
Sbjct: 160 GNQVGCLLGKGGSIIQQLRSDTGAGIRVLSSENLPQCALQSDELVQISGAPSLVRKALYE 219
Query: 237 VVGHLRKF 244
+ L +
Sbjct: 220 ISTRLHQH 227
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 82/148 (55%), Gaps = 10/148 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD-GPVSSPDRIVLISGKEEPEAPVS 138
R++ +GS+IG+ G +++ + T ARIKV + +S +R++++S E P P+S
Sbjct: 292 IRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNEIPTEPIS 351
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
P ++A + + +VS +S S RL+VPS + ++G+ G +I ++ +
Sbjct: 352 PTIEALILLHDKVSA---------SSEKHHSSTRLVVPSNKVGCILGEGGQVITEMRRRT 402
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGE 226
GA +RV S + P Y++ + +V+ G+
Sbjct: 403 GAEIRVYSKADKPKYLSFGDELVQAAGQ 430
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 330 SALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEIT 389
SA GR S I ++IP S E I+GVGG ++ IR+ SGA + + E+ E
Sbjct: 442 SASGRFSSTI------ELRIPNSSLESIVGVGGVNLAEIRQISGARLRLHEAHAGSSESV 495
Query: 390 VEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYPQLG 436
VEI+GT Q + AQ L++ ++ S S Q + P YP+ G
Sbjct: 496 VEIQGTLDQAKAAQSLLEGFI-----SANSRQQQSHSSRMPLYPRWG 537
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 32/165 (19%)
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGP--VSSPDRIVLISGKE 131
H R++VP KVG I+G G++I + T A I+V D P +S D +V +G+
Sbjct: 372 HSSTRLVVPSNKVGCILGEGGQVITEMRRRTGAEIRVYSKADKPKYLSFGDELVQAAGQ- 430
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ + GLP ASG ++ L +P++ +++G G +
Sbjct: 431 -------------IHGLEDYRGLP------SASGRFSSTIELRIPNSSLESIVGVGGVNL 471
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQG--EAAKVLKAL 234
I++ SGA +R+ A + E +VE+QG + AK ++L
Sbjct: 472 AEIRQISGARLRLHEA-----HAGSSESVVEIQGTLDQAKAAQSL 511
>gi|42573788|ref|NP_974990.1| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010500|gb|AED97883.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 824
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 39/226 (17%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
GH FR++ P+ VG++IG+ G +IK+ + T A+I+V + P SPDR++ I + + ++
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 136 PV---------------------SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
V S A A ++VF+ ++ ++D C RLL
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT-------VVC--RLL 155
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S+ A +IGK G ++ SI++ +G + + + P D+ +VE++G A V KAL
Sbjct: 156 TESSHAGAVIGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKAL 214
Query: 235 EAVVGHLRKFL-VDQ----GVLPLFEKTYNASISQERQVETWADKS 275
++ L+ +D+ G PL EK + AS+ R +ET +S
Sbjct: 215 VSISRCLQNCQSIDKVRMVGNRPL-EKEFQASL--HRPIETIIQES 257
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 118/226 (52%), Gaps = 7/226 (3%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ G +IG G++++ +T A I V + +R++ ++ E PE S
Sbjct: 453 VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSS 512
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA A + +F R+ L N + ++ + RL+VP++Q ++GK G ++ +++ +
Sbjct: 513 PAQKAIMLIFSRLFELATNKILDNGPRSSI-TARLVVPTSQIGCVLGKGGVIVSEMRKTT 571
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
GA++++L ++ P ++E++++V++ GE V +A+ + LR + + K+
Sbjct: 572 GAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSS 631
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPST----RRESLFL 300
+A ++ ER + +D + L + ++S T S+ R E FL
Sbjct: 632 SA-LTTERFYDRQSD-NPLSIGSHQSVSNPATNSSSLHRRSEDSFL 675
>gi|413933963|gb|AFW68514.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 464
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 97/188 (51%), Gaps = 18/188 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG-KEEP 133
P ++R++ P K+GS++GR G+++K E+T+A+I+V D + +R+++I + +P
Sbjct: 40 PIETIYRILCPAKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNQP 99
Query: 134 E-----------------APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVP 176
E P A DA +++ ++ D A + + R+LV
Sbjct: 100 ELTDEAAEKQISDGLGNMKPHCFAQDALLKIHDKIVADEIYDEVAHDESSDDVTARILVQ 159
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
Q L+GK GS+I+ ++ ++GA +RVLS++ P + + +V++ G + V KAL
Sbjct: 160 GNQVGCLLGKGGSIIQQLRSDTGAGIRVLSSENLPQCALQSDELVQISGAPSLVRKALYE 219
Query: 237 VVGHLRKF 244
+ L +
Sbjct: 220 ISTRLHQH 227
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 88/164 (53%), Gaps = 10/164 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD-GPVSSPDRIVLISGKEEPEAPVS 138
R++ +GS+IG+ G +++ + T ARIKV + +S +R++++S E P P+S
Sbjct: 292 IRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNEIPTEPIS 351
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
P ++A + + +VS +S S RL+VPS + ++G+ G +I ++ +
Sbjct: 352 PTIEALILLHDKVSA---------SSEKHHSSTRLVVPSNKVGCILGEGGQVITEMRRRT 402
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
GA +RV S + P Y++ + +V++ G A AL + LR
Sbjct: 403 GAEIRVYSKADKPKYLSFGDELVQVAGPPAIARGALTEIASRLR 446
>gi|297814608|ref|XP_002875187.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321025|gb|EFH51446.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 469
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 11/178 (6%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDR-IVLISGKEEPEAPVSPA 140
I P VG +IG+ G I +T +++ A IKV D I+ IS KE E SP
Sbjct: 248 FICPAENVGGVIGKGGCFINQTRQESGATIKVHTPETDEDDDCIIFISAKEFFEDQ-SPT 306
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
++AA+R+ R S V +S +A S R+L+PS+Q LIGK G+LI ++ + A
Sbjct: 307 VNAALRLQTRCS----EKVGKDSSDSAI-STRVLIPSSQVGCLIGKGGALISEMRSVTKA 361
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK--FLVDQG--VLPLF 254
++R+ ++ P E+E +V++ G +KAL V+ LR F +D+G +LP F
Sbjct: 362 NIRIFQGEDVPRIARENEEMVQITGSLDAAIKALTQVMLRLRANVFDMDRGLVLLPTF 419
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGK-------E 131
V+R + PV K GSIIGR GE+ K+ +T+A +++ + +R+V I E
Sbjct: 19 VYRYLCPVRKAGSIIGRGGEIAKQIRSETKANMRINEALPGCDERVVTIYSNSEETNRIE 78
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAF-----CSVRLLVPSTQAINLIGK 186
+ E V PA DA +V + ++ +G + +VR+LVPS Q LIGK
Sbjct: 79 DDEDFVCPAFDALFKVHDMIVAEEFDNDGDYDNGDEYSERQTVTVRMLVPSDQIGCLIGK 138
Query: 187 QGSLIKSIQENSGASVRVLSADEAP---FYVTEDERIVEMQGEAAKVLKALEAV 237
G +I+ ++ ++ A +RV++ D P ++ DE ++++ G+ + V +AL V
Sbjct: 139 GGQVIQKLRNDTNAQIRVIN-DNLPICALALSHDE-LLQIIGDPSAVREALYQV 190
>gi|147789222|emb|CAN69137.1| hypothetical protein VITISV_022037 [Vitis vinifera]
Length = 587
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 23/166 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-------- 127
GH FR++ ++G +IG+ G ++K+ DT ARI+V D P +S R++L+
Sbjct: 49 GHVAFRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDSPSTSDHRVILVIAPASVNR 108
Query: 128 -----SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA---AFCSVRLLVPSTQ 179
EE EA S A +A +RVF+R+ +V A G S RLL ++Q
Sbjct: 109 RIALQGSSEEVEA--SAAQEAVLRVFERIL-----EVAAVVDGVPPGGVVSCRLLAETSQ 161
Query: 180 AINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG 225
++IGK G +++ I+ SG+ ++VL+A++ P + +VE G
Sbjct: 162 VGSVIGKGGKVVEKIRRESGSKIKVLTAEKLPTCAASTDEMVEHSG 207
>gi|9759415|dbj|BAB09870.1| unnamed protein product [Arabidopsis thaliana]
Length = 833
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 39/226 (17%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
GH FR++ P+ VG++IG+ G +IK+ + T A+I+V + P SPDR++ I + + ++
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 136 PV---------------------SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
V S A A ++VF+ ++ ++D C RLL
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT-------VVC--RLL 155
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S+ A +IGK G ++ SI++ +G + + + P D+ +VE++G A V KAL
Sbjct: 156 TESSHAGAVIGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKAL 214
Query: 235 EAVVGHLRKFL-VDQ----GVLPLFEKTYNASISQERQVETWADKS 275
++ L+ +D+ G PL EK + AS+ R +ET +S
Sbjct: 215 VSISRCLQNCQSIDKVRMVGNRPL-EKEFQASL--HRPIETIIQES 257
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 118/226 (52%), Gaps = 7/226 (3%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ G +IG G++++ +T A I V + +R++ ++ E PE S
Sbjct: 453 VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSS 512
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA A + +F R+ L N + ++ + RL+VP++Q ++GK G ++ +++ +
Sbjct: 513 PAQKAIMLIFSRLFELATNKILDNGPRSSI-TARLVVPTSQIGCVLGKGGVIVSEMRKTT 571
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
GA++++L ++ P ++E++++V++ GE V +A+ + LR + + K+
Sbjct: 572 GAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSS 631
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPST----RRESLFL 300
+A ++ ER + +D + L + ++S T S+ R E FL
Sbjct: 632 SA-LTTERFYDRQSD-NPLSIGSHQSVSNPATNSSSLHRRSEDSFL 675
>gi|386771593|ref|NP_730700.2| mushroom-body expressed, isoform G [Drosophila melanogaster]
gi|442634089|ref|NP_001262197.1| mushroom-body expressed, isoform M [Drosophila melanogaster]
gi|383292066|gb|AAN12194.2| mushroom-body expressed, isoform G [Drosophila melanogaster]
gi|440216174|gb|AGB94890.1| mushroom-body expressed, isoform M [Drosophila melanogaster]
Length = 359
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 143/336 (42%), Gaps = 39/336 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSG---------- 73
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+A F ++ E D G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 74 TTNAIFSAFTLITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 133
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
S++V S ER V + G A ++ + + + L + E
Sbjct: 134 CSIQVASE----MLPNSTERAVTLSGSAEQITQCIYQI------------CLVMLESPPR 177
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
+ R L I Y T+ + ++ S G
Sbjct: 178 GATIPYRPKPQVTGPVILANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTGG 237
Query: 320 -QDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGV----GGTSIENIRRTSGA 374
AL+ + S L R + P Q ++ +S D+IG GGT I IR+ SGA
Sbjct: 238 INHTALAALAGSQL-RTANPANRAQQQQHEMTVS--NDLIGCIIGKGGTKIAEIRQISGA 294
Query: 375 IITV---QESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
+I + +E G + T+ I G V LAQ LI
Sbjct: 295 MIRISNCEEREGGNTDRTITISGNPDSVALAQYLIN 330
>gi|356522258|ref|XP_003529764.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 559
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 95/165 (57%), Gaps = 8/165 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ KVGS+IG+ G +++ +T A I++++ S +R+V+IS +E E S
Sbjct: 195 VFKLLCHHEKVGSLIGKGGSVVRALQNETGASIQIVEAGPDSDERVVVISARETSEQKHS 254
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA +A +RV R++ ++ + S A +LLV S Q L+GK G +I ++ +
Sbjct: 255 PAQEAVIRVHCRLT-----EIGFEPSAAVV--AKLLVRSPQVGCLLGKGGLVISEMRRVT 307
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
GAS+R+ S ++ Y++++E +V++ G V AL + +R+
Sbjct: 308 GASIRIFSKEQIK-YISQNEEVVQVIGSLQSVQDALFHITSRIRE 351
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 24/159 (15%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFR++ P K + G+ K ED VS+ +R+V+I G+E S
Sbjct: 20 VFRIVCPAAKTEDVATIGGDGAKILVEDL----------VSAEERVVVIVGEE------S 63
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A A VRVF+R VD + + S +L+ PS Q ++G+ G +++ I++++
Sbjct: 64 AAQVALVRVFERT-------VDEETKNSTV-SCKLVAPSYQVGCVLGRGGKIVEKIRQDT 115
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
GA +RVL D+ P E +++ G V KA+ +V
Sbjct: 116 GAHIRVLPKDQPPLPPPPGEEFIQITGNFGAVKKAVLSV 154
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 328 RSSALGRASGPIVT--QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLP 385
R+ LG P+ +T + IP Y + G +++ IR+TSGA + V + +
Sbjct: 468 RNENLGENGNPLQNPNNLTIEITIPHMYLTHVYGENNSNLTQIRQTSGANVVVHDPKPGA 527
Query: 386 DEITVEIKGTSSQVQLAQQLIQEYM 410
E V + G Q AQ LIQ ++
Sbjct: 528 TEGLVIVSGAPDQTHAAQSLIQAFI 552
>gi|297804330|ref|XP_002870049.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297315885|gb|EFH46308.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 605
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 17/181 (9%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKEEPEA- 135
++R++ P+ VG +IG+ G++I +T+A+IKV D R++ I S KE+ E
Sbjct: 39 IYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKKEEE 98
Query: 136 ---------PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGK 186
P+ A DA ++V+ + E ++ C LLVPS+Q+ +LIGK
Sbjct: 99 IDFMKSETEPLCCAQDALLKVYDAIVASDEENIKIDRDDKKEC--LLLVPSSQSFSLIGK 156
Query: 187 QGSLIKSIQENSGASVRVLSADEA-PFYVT--EDERIVEMQGEAAKVLKALEAVVGHLRK 243
G IK I+ + ASV+V+S D + P +V + + IV + GE V KAL AV L K
Sbjct: 157 AGENIKRIRSTTRASVKVVSKDVSDPSHVCAMDYDNIVVISGEPESVKKALFAVSAILYK 216
Query: 244 F 244
Sbjct: 217 I 217
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 152/334 (45%), Gaps = 45/334 (13%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDR--IVLISGKEEPEAP 136
V +++ P+ + +IG+ G IK+ E + + I+V D D +++++ E P+
Sbjct: 312 VLKVLCPLSNITRVIGKGGSTIKRIRETSGSCIEVNDSRTKCGDDECVIIVTATESPDDM 371
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
S A++A + + + + ND DA+ ++L V S +IGK GS+I I++
Sbjct: 372 KSMAVEAVLLLQEYI-----NDEDAEK-----VKMQLFVSSKDIGCVIGKSGSVINEIRK 421
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
+ A++ + + + +VE+ GE + V A+ +V LR+ ++
Sbjct: 422 RTNANICISKGKK--------DDLVEVAGEISSVRNAIIQIVLRLREDVLGD-------- 465
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGIS 316
S++ R+ D SL + + +A YT P S SG
Sbjct: 466 --RDSVAASRKPPARTDNYSLFSGSSNA---GYTL------------PSFMSSASSSGFH 508
Query: 317 IYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAII 376
YG PA + S + G + + + IP + ++G GG ++ENIRR SGA+I
Sbjct: 509 GYGSFPAGDNVFGSVSPYSFGRLPSSSALEILIPANAMSKVMGKGGGNLENIRRISGAMI 568
Query: 377 TVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ +S+ + + GT Q++ A+ L+Q ++
Sbjct: 569 EISDSKTSQGDHIALLSGTLEQMRCAENLVQAFI 602
>gi|28261405|gb|AAO37829.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 836
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 39/226 (17%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
GH FR++ P+ VG++IG+ G +IK+ + T A+I+V + P SPDR++ I + + ++
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 136 PV---------------------SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
V S A A ++VF+ ++ ++D C RLL
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT-------VVC--RLL 155
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S+ A +IGK G ++ SI++ +G + + + P D+ +VE++G A V KAL
Sbjct: 156 TESSHAGAVIGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKAL 214
Query: 235 EAVVGHLRKFL-VDQ----GVLPLFEKTYNASISQERQVETWADKS 275
++ L+ +D+ G PL EK + AS+ R +ET +S
Sbjct: 215 VSISRCLQNCQSIDKVRMVGNRPL-EKEFQASL--HRPIETIIQES 257
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 117/226 (51%), Gaps = 7/226 (3%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ G +IG G++++ +T A I V + +R++ ++ E PE S
Sbjct: 465 VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNALDDCEERLIAVTASENPECQSS 524
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA A + +F R+ L N + ++ + RL+VP++Q ++GK G ++ +++ +
Sbjct: 525 PAQKAIMLIFSRLFELATNKILDNGPRSSI-TARLVVPTSQIGCVLGKGGVIVSEMRKTT 583
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
GA++++L ++ P ++E++++V++ E V +A+ + LR + + K+
Sbjct: 584 GAAIQILKVEQNPKCISENDQVVQITEEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSS 643
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPST----RRESLFL 300
+A ++ ER + +D + L + ++S T S+ R E FL
Sbjct: 644 SA-LTTERFYDRQSD-NPLSIGSHQSVSNPATNSSSLHRRSEDSFL 687
>gi|356526304|ref|XP_003531758.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Glycine
max]
Length = 565
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 96/167 (57%), Gaps = 8/167 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ KVGS+IG+ G +++ +T A I++++ S +R+V+IS +E E S
Sbjct: 201 VFKLLCRHDKVGSLIGKGGSVVRALQNETGASIQIVEAGPDSDERVVVISAQETSEQKHS 260
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
PA +A +RV R++ ++ + S A +LLV S Q L+GK G +I ++ +
Sbjct: 261 PAQEAVIRVHCRLT-----EIGFEPSAAVV--AKLLVRSPQVGCLLGKGGLVISEMRRAT 313
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
GAS+R+ S ++ Y++++E +V++ G V AL + +R+ +
Sbjct: 314 GASIRIFSKEQIK-YISQNEEVVQVIGSLQSVQDALFHITNRIRETI 359
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 26/165 (15%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFR++ P K + G+ K ED V + +R+V+I G E S
Sbjct: 20 VFRIVCPAAKTADVAAIGGDGAKILVEDL----------VGAEERVVVIVGDE------S 63
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A A +RV +R D + K S S +L+ PS Q ++G+ G +++ I+++S
Sbjct: 64 AAQVALIRVLERTM-----DEETKNSTV---SCKLVAPSYQVGCVLGRGGKIVEKIRQDS 115
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
GA +RVL D+ + +++ G V KA+ +V L +
Sbjct: 116 GAHIRVLPKDQP--PPPPGDEFIQITGNFGAVKKAVLSVSACLHE 158
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
+T + IP Y + G +++ IR+TSGA + V +S+ E V + G Q A
Sbjct: 491 LTIEITIPYMYLTHVYGENNSNLTQIRQTSGANVAVHDSKPGATEGLVIVSGAPDQTHAA 550
Query: 403 QQLIQEYM 410
Q LIQ ++
Sbjct: 551 QCLIQGFI 558
>gi|308798891|ref|XP_003074225.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
gi|116000397|emb|CAL50077.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
Length = 402
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 31/216 (14%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
G VFR++ +VG +IGR+G+ ++ +T A++KVL +R VLI +
Sbjct: 14 GTAVFRVLCAETRVGGLIGRQGKRVRGIVTETGAQVKVLASTARCHERAVLIFAPRARDG 73
Query: 136 P--VSPAMDAAVRVFK---RVSGLPENDVDAKASGA------------------------ 166
P A + A RV + R + E++ D +
Sbjct: 74 PGDTCAAREGARRVVRYLTRARAVTEDECDGARDESEDESDDDDDGRRGDGVGGQDLGRS 133
Query: 167 -AFCSVRLLVPSTQAINLIGKQGSLIKSIQENS-GASVRVLSADEAPFYVTEDERIVEMQ 224
A ++RLLVP+ QA +LIGK G I+ +++ + GA V V + P T ++R+VE+
Sbjct: 134 TAHVTLRLLVPAGQAGHLIGKGGENIQEVRKRANGAHVAVQEVGQVPPCATSEDRVVEIH 193
Query: 225 GEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNA 260
G+ V A +AV L+ +LVD VL ++ T A
Sbjct: 194 GKPKDVRVAADAVFESLKDYLVDSSVLGHYQPTVAA 229
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 332 LGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR-RTSGAIITVQESRGLP----- 385
LGR++ +T + +P A +IG GG +I+ +R R +GA + VQE +P
Sbjct: 130 LGRST----AHVTLRLLVPAGQAGHLIGKGGENIQEVRKRANGAHVAVQEVGQVPPCATS 185
Query: 386 DEITVEIKGTSSQVQLAQQLIQEYMNNH 413
++ VEI G V++A + E + ++
Sbjct: 186 EDRVVEIHGKPKDVRVAADAVFESLKDY 213
>gi|413933966|gb|AFW68517.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 428
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 97/188 (51%), Gaps = 18/188 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG-KEEP 133
P ++R++ P K+GS++GR G+++K E+T+A+I+V D + +R+++I + +P
Sbjct: 40 PIETIYRILCPAKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNQP 99
Query: 134 E-----------------APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVP 176
E P A DA +++ ++ D A + + R+LV
Sbjct: 100 ELTDEAAEKQISDGLGNMKPHCFAQDALLKIHDKIVADEIYDEVAHDESSDDVTARILVQ 159
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEA 236
Q L+GK GS+I+ ++ ++GA +RVLS++ P + + +V++ G + V KAL
Sbjct: 160 GNQVGCLLGKGGSIIQQLRSDTGAGIRVLSSENLPQCALQSDELVQISGAPSLVRKALYE 219
Query: 237 VVGHLRKF 244
+ L +
Sbjct: 220 ISTRLHQH 227
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 81/145 (55%), Gaps = 10/145 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD-GPVSSPDRIVLISGKEEPEAPVS 138
R++ +GS+IG+ G +++ + T ARIKV + +S +R++++S E P P+S
Sbjct: 292 IRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNEIPTEPIS 351
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
P ++A + + +VS +S S RL+VPS + ++G+ G +I ++ +
Sbjct: 352 PTIEALILLHDKVSA---------SSEKHHSSTRLVVPSNKVGCILGEGGQVITEMRRRT 402
Query: 199 GASVRVLSADEAPFYVTEDERIVEM 223
GA +RV S + P Y++ + +V++
Sbjct: 403 GAEIRVYSKADKPKYLSFGDELVQV 427
>gi|426218397|ref|XP_004003433.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Ovis aries]
Length = 319
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 152/337 (45%), Gaps = 49/337 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +A++ +++ V P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTP-------DAIIQCVKQICVVMLESPRK 172
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
T + +A + Q AI + T+ L +++ P
Sbjct: 173 GVTVVVAPKPASTPVIFAGGQAYTIQGQYAIP--HPDLTKLHQLAMQQTP---------- 220
Query: 315 ISIYGQ-DPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
GQ +PA G + P + T + IP IIG GT I IR+ SG
Sbjct: 221 FPPLGQTNPAFPA------GLDASPPAS--THELTIPNDLIGCIIGRQGTKINEIRQMSG 272
Query: 374 AIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
A I + + E + I GT + + LAQ LI +
Sbjct: 273 AQIKIANATEGSSERQITITGTPANISLAQYLINARL 309
>gi|449274935|gb|EMC83962.1| Poly(rC)-binding protein 4 [Columba livia]
Length = 324
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 150/351 (42%), Gaps = 72/351 (20%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ ++GSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 25 LRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 72
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKSIQ 195
+ DA R ++ E D+ A + GAA ++RL++P++Q +LIGK G+ I+ I+
Sbjct: 73 STDAVFRAVSMIAFKLEEDLGAGSDGAAVGRSPVTLRLVIPASQCGSLIGKAGAKIREIR 132
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE 255
E++GA V+V + D P ER V + G ++ + + + +
Sbjct: 133 ESTGAQVQV-AGDLLP---NSTERAVTVSGVPDTIIHCVRQICAVILE------------ 176
Query: 256 KTYNASISQERQVETWADKSSLHA-----ATQSAISTEYTPSTRRE----SLFLEREPQL 306
+ E + W H T S IS ++P T + ++ P +
Sbjct: 177 ------VPTESPTQAWGAFPHQHGYLPPKMTLSLIS--WSPCTHQSPPNPAVGKHWHPIM 228
Query: 307 ESRYR--------LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
Y L+ +S+ P L T ++ +Q +P II
Sbjct: 229 TDAYSYWRPTTPLLTSLSL---PPGLDTSSQNS------------SQEFLVPNDLIGCII 273
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEY 409
G G+ I IR+ SGA I + E V I G+ + +AQ LI +
Sbjct: 274 GRHGSKISEIRQMSGAHIKIGNQTEGSSERHVTITGSPVSITVAQYLITAW 324
>gi|255584811|ref|XP_002533123.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223527086|gb|EEF29268.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 405
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 5/169 (2%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R++ P +G +IG+ G +I + +++ A IKV D ++ +S KE + SP
Sbjct: 157 LRIVCPTGNIGGVIGKGGTIINQIRQESGAVIKVDSSTAEGDDCLITVSAKEFFDDQYSP 216
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
++AA+R+ R S + A+ SG + RLLVP+++ L+GK G +I +++ +
Sbjct: 217 TIEAAIRLQPRCS-----EKIARDSGLISFTTRLLVPTSRIGCLLGKGGVIINEMRKVTK 271
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
A++R+L D P +ED+ +V++ G+ AL V LR D+
Sbjct: 272 ANIRILGKDNLPKVASEDDEMVQISGDLDVAKDALTHVSRRLRANAFDR 320
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDER 219
D + G + RL+VPS Q +IGK G ++++I+ +GA +R+L + P +
Sbjct: 4 DDDSEGGHQVTARLIVPSDQIGCIIGKGGQIVQNIRSETGAQIRILKDEHLPPCALSTDE 63
Query: 220 IVEMQGEAAKVLKALEAVVGHLRK 243
+V++ GE A V KAL + L +
Sbjct: 64 LVQISGEVAVVKKALYQIATRLHE 87
>gi|417410186|gb|JAA51570.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 376
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 168/361 (46%), Gaps = 43/361 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 28 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 78 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 135
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGV- 250
+E++GA V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 136 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVT 191
Query: 251 LPLFEKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER---- 302
+P K ++ + Q+R T +D +S T S E+ ++
Sbjct: 192 IPYRPKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAI 250
Query: 303 -EPQLESRYRL----SGISIYGQDPALSTIRSSALGR----ASGPIVTQITQTMQIPISY 353
+P L ++L S + + S I SS+ AS TQ T + IP +
Sbjct: 251 PQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWASLDASTQTTHELTIPNNL 310
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
IIG G +I IR+ SGA I + V I G+++ + LAQ LI +++
Sbjct: 311 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 370
Query: 414 K 414
K
Sbjct: 371 K 371
>gi|21553916|gb|AAM62999.1| unknown [Arabidopsis thaliana]
Length = 644
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 169/377 (44%), Gaps = 37/377 (9%)
Query: 54 LPQSTGPDAA---------AVPEEKKWPG--WPGHCVFRMIVPVLKVGSIIGRKGELIKK 102
LPQ G +AA A+P + G ++I K+G +IG+ G IK
Sbjct: 282 LPQGYGENAANPLPVFSASALPVVHGFGGSSRSEKLAIKVICASSKIGRVIGKGGLTIKG 341
Query: 103 TCEDTRARIKVLDGPVSSPDRIVL-ISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA 161
+ + + I+V D + D V+ ++ E P+ S A++A + + ++++ E+ V
Sbjct: 342 IRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLLQEKINDEDEDKV-- 399
Query: 162 KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
++LLV S +IGK GS+I I++ + A + + + P ++ +V
Sbjct: 400 --------KMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKSADPNDELV 451
Query: 222 EMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAAT 281
E+ GE + V AL +V LR + L ++ + + E SS + T
Sbjct: 452 EISGEVSNVRDALIQIVLRLRDDV-------LRDRETGSRNQPPARSENNNFFSSSSSNT 504
Query: 282 QSAISTEYTPST-RRESLFLEREPQLESRYRL----SGISIYGQDPALSTIRSSALGRAS 336
A+ + S + S+ +R P+ S + GI YG P +T S +S
Sbjct: 505 GLALPQSFMSSVPQVASVDFDRRPETGSSMSMLPSSGGIYGYGSFPVGNTSYGSNSSYSS 564
Query: 337 ---GPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIK 393
G + T ++IP + ++G GG +++NIRR SGA+I + +S+ I
Sbjct: 565 NLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALIS 624
Query: 394 GTSSQVQLAQQLIQEYM 410
GTS Q + A+ L Q ++
Sbjct: 625 GTSEQKRTAENLFQAFI 641
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 171/369 (46%), Gaps = 49/369 (13%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKEEPE-- 134
V+R++ P +GS+IG+ G++I ++TRARIKV+D +R++ I S E+ +
Sbjct: 45 VYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIV 104
Query: 135 ----------APVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINL 183
P+ A A ++V V+ L + K F RLLVPS+Q +
Sbjct: 105 DIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIV 164
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEA-PFYVT--EDERIVEMQGEAAKVLKALEAVVGH 240
IGK GS+IK+I+ + A+V+V+S D + P + + + IV + GE V KAL AV
Sbjct: 165 IGKSGSIIKNIRGRTRANVKVVSKDASDPSHTCAMDFDNIVMISGETESVKKALFAVSAI 224
Query: 241 LRKFLVDQGV-LPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLF 299
+ K + + L + ASI + + ++ L+ + S S+ F
Sbjct: 225 MYKVSPREQIPLDTTVQEVPASIIIPSDLSIYP-QAGLYPSQDSIFQHGANVSS-----F 278
Query: 300 LEREPQLESRYRLSGISIYGQDPA--LSTIRSSALGRASGPIVTQITQTMQIPISYAED- 356
+ PQ YG++ A L +SAL G + ++ + I + A
Sbjct: 279 IGTLPQG-----------YGENAANPLPVFSASALPVVHGFGGSSRSEKLAIKVICASSK 327
Query: 357 ---IIGVGGTSIENIRRTSGAIITVQESR-GLPDEITVEIKGTSSQVQL------AQQLI 406
+IG GG +I+ IR+ SG+ I V +SR D+ + + T S L A L+
Sbjct: 328 IGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLL 387
Query: 407 QEYMNNHKE 415
QE +N+ E
Sbjct: 388 QEKINDEDE 396
>gi|410897345|ref|XP_003962159.1| PREDICTED: poly(rC)-binding protein 3-like [Takifugu rubripes]
Length = 321
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 149/348 (42%), Gaps = 67/348 (19%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 18 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 67
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
D + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK +
Sbjct: 68 --DTIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEM 125
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLP-- 252
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 126 RESTGAQVQV-AGDMLP---NSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYR 181
Query: 253 --------LFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP 304
+F +I + + + LH T +TP + F P
Sbjct: 182 PKPASTPVIFSGGQAYTIQGQYAIPHPDQLTKLHQLAMQ--QTPFTPLGQATPAF----P 235
Query: 305 QLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTS 364
L++ P ST + IP IIG GT
Sbjct: 236 GLDA------------SPPAST------------------HELTIPNDLIGCIIGRQGTK 265
Query: 365 IENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
I IR+ SGA I + + E + I GT + + LAQ LI + +
Sbjct: 266 INEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINARLTS 313
>gi|417399108|gb|JAA46584.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 333
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 157/356 (44%), Gaps = 64/356 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGVL 251
+E++GA V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVT 179
Query: 252 ----------PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE 301
P+ A Q + D + LH Q A+ + P T + F
Sbjct: 180 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMTHGNTGFSG 236
Query: 302 RE---PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
E P+++ + AS TQ T + IP + II
Sbjct: 237 IESSSPEVKGYW------------------------ASLDASTQTTHELTIPNNLIGCII 272
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
G G +I IR+ SGA I + V I G+++ + LAQ LI +++ K
Sbjct: 273 GRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK 328
>gi|432848574|ref|XP_004066413.1| PREDICTED: poly(rC)-binding protein 3-like [Oryzias latipes]
Length = 349
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 161/361 (44%), Gaps = 49/361 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK ED+ ARI + +G + P+RIV
Sbjct: 18 IRLLMHGKEVGSIIGKKGETVKKMREDSGARINISEG--NCPERIVTXXXXXX------- 68
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK +
Sbjct: 69 ---XIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEM 125
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 126 RESTGAQVQV-AGDMLP---NSTERAVTISGAPEAIIQCVKQICVVMLESPPKGATIPYR 181
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRY 310
K + + Q R A ++L Q + P+ + + P L +
Sbjct: 182 PKPASTPVIFSGGQVRADPLGASTANLSLLLQH----QPLPAYTIQGQYAIPHPDLSKLH 237
Query: 311 RLSG----ISIYGQ-DPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSI 365
+L+ + GQ PA + +S +AS T + IP IIG GT I
Sbjct: 238 QLAMQQTPFTPLGQTTPAFPGLDAS--NQAS-------THELTIPNDLIGCIIGRQGTKI 288
Query: 366 ENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEY------MNNHKESITS 419
IR+ SGA I + + E + I GT + + LAQ LI M N S+T+
Sbjct: 289 NEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINARFRDVAAMWNDPSSMTT 348
Query: 420 S 420
S
Sbjct: 349 S 349
>gi|224077694|ref|XP_002305366.1| predicted protein [Populus trichocarpa]
gi|222848330|gb|EEE85877.1| predicted protein [Populus trichocarpa]
Length = 262
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM+ P +G++IG+ G +I + +++ A IKV D ++ IS KE + SP
Sbjct: 33 LRMVCPTANIGAVIGKGGTIINQIRQESGATIKVDSSASEGDDCLITISAKEICDDQYSP 92
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
++AA+R+ R S E D SG + RLLVPS+ L+GK G +I +++ +
Sbjct: 93 TIEAALRLQPRCSEKMERD-----SGLFSFTTRLLVPSSHIGCLLGKGGLIIDEMRKLTK 147
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ-----GVLPLF 254
A +R+ D+ P +D+ +V++ G+ AL + LR D+ +LP+F
Sbjct: 148 AIIRIPRKDKLPKTALDDDEMVQISGDLDIAKDALIQISRRLRANAFDREGLMSAILPVF 207
>gi|15237393|ref|NP_199431.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|9757739|dbj|BAB08264.1| unnamed protein product [Arabidopsis thaliana]
gi|14532588|gb|AAK64022.1| unknown protein [Arabidopsis thaliana]
gi|21280941|gb|AAM44907.1| unknown protein [Arabidopsis thaliana]
gi|332007968|gb|AED95351.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 644
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 168/377 (44%), Gaps = 37/377 (9%)
Query: 54 LPQSTGPDAA---------AVPEEKKWPG--WPGHCVFRMIVPVLKVGSIIGRKGELIKK 102
LPQ G +AA A+P + G ++I K+G +IG+ G IK
Sbjct: 282 LPQGYGENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKG 341
Query: 103 TCEDTRARIKVLDGPVSSPDRIVL-ISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA 161
+ + + I+V D + D V+ ++ E P+ S A++A + + ++++ E+ V
Sbjct: 342 IRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLLQEKINDEDEDKV-- 399
Query: 162 KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
++LLV S +IGK GS+I I++ + A + + + P ++ +V
Sbjct: 400 --------KMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELV 451
Query: 222 EMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAAT 281
E+ GE + V AL +V LR + L ++ + + E SS + T
Sbjct: 452 EISGEVSNVRDALIQIVLRLRDDV-------LRDRETGSRNQPPARSENNNFFSSSSSNT 504
Query: 282 QSAISTEYTPST-RRESLFLEREPQLESRYRL----SGISIYGQDPALSTIRSSALGRAS 336
A+ + S + S+ R P+ S + GI YG P +T S +S
Sbjct: 505 GLALPQSFMSSVPQVASVDFNRRPETGSSMSMLPSSGGIYGYGSFPVGNTSYGSNSSYSS 564
Query: 337 ---GPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIK 393
G + T ++IP + ++G GG +++NIRR SGA+I + +S+ I
Sbjct: 565 NLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALIS 624
Query: 394 GTSSQVQLAQQLIQEYM 410
GTS Q + A+ L Q ++
Sbjct: 625 GTSEQKRTAENLFQAFI 641
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 171/369 (46%), Gaps = 49/369 (13%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKEEPE-- 134
V+R++ P +GS+IG+ G++I ++TRARIKV+D +R++ I S E+ +
Sbjct: 45 VYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIV 104
Query: 135 ----------APVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINL 183
P+ A A ++V V+ L + K F RLLVPS+Q +
Sbjct: 105 DIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIV 164
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEA-PFYVT--EDERIVEMQGEAAKVLKALEAVVGH 240
IGK GS+IK+I+ + A+V+V+S D + P + + + IV + GE V KAL AV
Sbjct: 165 IGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSAI 224
Query: 241 LRKFLVDQGV-LPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLF 299
+ K + + L + ASI + + ++ L+ + S S+ F
Sbjct: 225 MYKVSPREQIPLDTTVQEVPASIIIPSDLSIYP-QAGLYPSQDSIFQHGANVSS-----F 278
Query: 300 LEREPQLESRYRLSGISIYGQDPA--LSTIRSSALGRASGPIVTQITQTMQIPI----SY 353
+ PQ YG++ A + +SAL G + ++ + I + S
Sbjct: 279 IGTLPQG-----------YGENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVICSSSK 327
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQESR-GLPDEITVEIKGTSSQVQL------AQQLI 406
+IG GG +I+ IR+ SG+ I V +SR D+ + + T S L A L+
Sbjct: 328 IGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLL 387
Query: 407 QEYMNNHKE 415
QE +N+ E
Sbjct: 388 QEKINDEDE 396
>gi|327265639|ref|XP_003217615.1| PREDICTED: poly(rC)-binding protein 4-like [Anolis carolinensis]
Length = 422
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 156/363 (42%), Gaps = 57/363 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 30 LRMLMHGKEVGSIIGKKGETVKRIREQSTARITISEG--SCPERITTITG---------- 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+ DA R ++ E D+ A S +RL++P++Q +LIGK G+ IK I
Sbjct: 78 STDAVFRAVSMIAFKLEEDLGTGAINGGTVSKPPVTLRLVIPASQCGSLIGKAGAKIKEI 137
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E +GA V+V + D P ER V + G +++ + + + + +P
Sbjct: 138 RETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIIQCVRQICAVILESPPKGATIP-- 191
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
Y+ ++S + L A ++ +Y ++ E L+ +LSG
Sbjct: 192 ---YHPNLSLGPVL--------LSANQGFSMQGQYGGISQAEVAKLQ---------QLSG 231
Query: 315 ----ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRR 370
S GQ P++ + +S Q +P IIG G+ I IR+
Sbjct: 232 HPVSFSSLGQTPSIVAGLDTNSQNSS--------QEFLVPNDLIGCIIGRQGSKISEIRQ 283
Query: 371 TSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRP 430
SGA I + E V I GT + LAQ LI + K TS +D G
Sbjct: 284 MSGAHIKIGNQTEGSAERHVTITGTPVSITLAQYLISACLETAKS--TSQTPPVDLGMTF 341
Query: 431 SYP 433
S P
Sbjct: 342 SQP 344
>gi|326935820|ref|XP_003213964.1| PREDICTED: poly(rC)-binding protein 4-like, partial [Meleagris
gallopavo]
Length = 232
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 20/180 (11%)
Query: 60 PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS 119
PD A+ P E P RM++ ++GSIIG+KGE +K+ E + ARI + +G S
Sbjct: 4 PDRASGPRE---PQLSITLTLRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEG--S 58
Query: 120 SPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV-DAKASGAAFCSVRLLVPST 178
P+RI I+G + DA R ++ E D+ D A+G ++RL++P++
Sbjct: 59 CPERITTITG----------STDAVFRAVSMIAFKLEEDLGDGTAAGRTPVTLRLVIPAS 108
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
Q +LIGK G+ I+ I+E+SGA V+V + D P ER V + G +++ + +
Sbjct: 109 QCGSLIGKAGTKIREIRESSGAQVQV-AGDLLP---NSTERAVTVSGVPDTIIQCVRQIC 164
>gi|363746094|ref|XP_003643523.1| PREDICTED: poly(rC)-binding protein 4-like, partial [Gallus gallus]
Length = 239
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 20/180 (11%)
Query: 60 PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS 119
PD A+ P E P RM++ ++GSIIG+KGE +K+ E + ARI + +G S
Sbjct: 4 PDRASGPRE---PQLSITLTLRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEG--S 58
Query: 120 SPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV-DAKASGAAFCSVRLLVPST 178
P+RI I+G + DA R ++ E D+ D A+G ++RL++P++
Sbjct: 59 CPERITTITG----------STDAVFRAVSMIAFKLEEDLGDGTAAGRTPVTLRLVIPAS 108
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
Q +LIGK G+ I+ I+E+SGA V+V + D P ER V + G +++ + +
Sbjct: 109 QCGSLIGKAGTKIREIRESSGAQVQV-AGDLLP---NSTERAVTVSGVPDTIIQCVRQIC 164
>gi|308080276|ref|NP_001183239.1| hypothetical protein [Zea mays]
gi|238010240|gb|ACR36155.1| unknown [Zea mays]
gi|414884425|tpg|DAA60439.1| TPA: hypothetical protein ZEAMMB73_126154 [Zea mays]
Length = 647
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 97/422 (22%), Positives = 173/422 (40%), Gaps = 55/422 (13%)
Query: 29 PTTESEAP-PTIGSENTEHTTE------SDSALPQSTGPDAAAVPEEKKWPGWPGHCVFR 81
P SE P P +G+ +E +TE + + P+ DA + ++ FR
Sbjct: 230 PWASSEVPGPNMGASCSEASTEFAQGSVAKTHCPEGNTGDAQSKTLQQ--------VSFR 281
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAM 141
+++P G +IG+KG +IK +T A I V +R++ I E P++
Sbjct: 282 LLLPTYLAGGLIGKKGLIIKGIEVETGACIDVGAPVAGCKERVITICALESPDSEYHIVQ 341
Query: 142 DAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
A + +F R+ + N + F VR+LV Q L+G GS+IK + +GA
Sbjct: 342 SALLLIFDRMMEMETNTHSTFEKASQFL-VRVLVLKNQFGCLVGLGGSIIKEMVNTTGAR 400
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNAS 261
+++L E P + E +V++ GE + AL V LR + E YN S
Sbjct: 401 IQILDDTEIPACASTFELVVQITGELMNIRNALSLVFWKLRNHIFSN------ETDYNNS 454
Query: 262 -ISQERQVETWA-DKSSLHAATQSAISTEYTPSTRR---------ESLFLERE---PQLE 307
IS E+ A ++++++ Q ++ + R E F + E +++
Sbjct: 455 HISSSEIAESNATSQANIYSTIQYSVDNGHKVDHRSPLSYGVDSVEKSFSDLELSSSEIQ 514
Query: 308 SRYRLSGISIYGQDPA-------------------LSTIRSSALGRASGPIVTQITQTMQ 348
+G+ I D +S+ ++ + A +T+IT
Sbjct: 515 KPDNGNGVRINNSDSGIQNPSDWNGIVTNNLNDGIISSDENNLVRGAEHAAITRITYETA 574
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQE 408
+ S + G G+++ + SGA I V +E + + G Q Q AQ+L+ E
Sbjct: 575 VSGSILTLVYGDNGSNLAKLTEVSGADIIVYNPPSEGNEAMIVVSGPPDQAQSAQRLLVE 634
Query: 409 YM 410
+
Sbjct: 635 LI 636
>gi|326530414|dbj|BAJ97633.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 16/225 (7%)
Query: 35 APPTIGSEN-------TEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVL 87
+PP I EN +H P P VPE +++ R++
Sbjct: 24 SPPPIPHENHMLPHLHVDHPPPMPLLDPYRNRPLQYPVPEPEEF-------SIRILCASE 76
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLD-GPVSSPDRIVLISGKEEPEAPVSPAMDAAVR 146
+G +IGR G +++ + T ARI V + +S +R+++IS KE P PVSP ++A +
Sbjct: 77 LIGPVIGRSGANVRQVEQQTGARIVVQELHKDASGERLIVISSKEIPADPVSPTIEALIL 136
Query: 147 VFKRVSGLPEND-VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL 205
+ +VS ++ +++ SG RL+VPS + ++G+ G +I ++ GA +RV
Sbjct: 137 LHSKVSASKVSEPSESEPSGEHKLVTRLVVPSKKVGCILGEGGKVITEMRRRIGAEIRVY 196
Query: 206 SADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGV 250
S + P Y++ +E +V++ G +AL + LR ++ G+
Sbjct: 197 SKADKPKYLSFNEELVQVSGSPDIAREALTEIASRLRDRILRDGI 241
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
++IP S E ++G GG ++ IR+ SGA + + E+R E +EI+G + QV++AQ L+
Sbjct: 496 LRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLL 555
Query: 407 QEYMNNHKESITSSYGQIDTGYRPSYP 433
Q ++ + +S Q +R YP
Sbjct: 556 QGFIGANSQS-----AQPSQSFRDLYP 577
>gi|417410720|gb|JAA51826.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 440
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 162/384 (42%), Gaps = 63/384 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 57 LRMLMQGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 104
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 105 ---STAAVFHAVSMIAFKLDEDLCSAPANGGTVSRPPVTLRLVIPASQCGSLIGKAGTKI 161
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 162 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 217
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ +Y T E L+ +
Sbjct: 218 P-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTPAEVTKLQ---------Q 255
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
LSG ++ P++ P +Q +P +IG G+ I IR+
Sbjct: 256 LSGHAVPFASPSMVP--------GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 307
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPS 431
SGA I + E V I G+ + LAQ LI + K + + G T
Sbjct: 308 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPTDLSAP 367
Query: 432 YPQLGNSSYPSSSLSTQPYGGYGS 455
+ S P ++L T P G G+
Sbjct: 368 F------SPPLTALPTAPPGLLGA 385
>gi|47209955|emb|CAF90944.1| unnamed protein product [Tetraodon nigroviridis]
Length = 164
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 25/165 (15%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+VGSIIG+KGE +KK E++ ARI + +G SSP+RIV I+G A +A R
Sbjct: 7 EVGSIIGKKGETVKKIREESGARINISEG--SSPERIVTITG----------ATEAIFRT 54
Query: 148 FKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSIQENSGASV 202
F ++ E D++A S + S +RL+ P +Q +LIGK GS IK I+E +GA V
Sbjct: 55 FAMIAQKFEEDINAAMSNSNVTSKPPVTLRLVFPGSQCGSLIGKGGSKIKEIRETTGAQV 114
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD 247
+V + D P ER V + G +A+ V H+ +++
Sbjct: 115 QV-AGDMLP---DSTERAVTISGTP----QAITQCVRHICSVMLE 151
>gi|147853553|emb|CAN81693.1| hypothetical protein VITISV_009249 [Vitis vinifera]
Length = 543
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 24/186 (12%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP-- 136
V+R + PV K+GSIIGR G++ K+ +T++ I++ + +R+V I E P
Sbjct: 44 VYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETNPFG 103
Query: 137 -----VSPAMDAAVRVFKRVSG--LPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGS 189
VSPA DA RV R+ LP D + A +VR+LVPS Q +IGK G
Sbjct: 104 DTGELVSPAQDALFRVHDRIVAGELP---ADEEPEEAQQVTVRMLVPSDQIGCVIGKGGQ 160
Query: 190 LIKSIQENSGASVRVLSADEA-PFYVTEDERI-----------VEMQGEAAKVLKALEAV 237
+I++I+ + A +R+L + P ++ DE + ++ G+A+ V KAL +
Sbjct: 161 VIQNIRSETRAQIRILKDEHLPPCALSSDELLQAFGNVFWALTSQIIGDASVVRKALHQL 220
Query: 238 VGHLRK 243
L +
Sbjct: 221 ASRLHE 226
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+++ A IKV D I+ IS KE E P SP +DAA+R+ R S E + S
Sbjct: 322 QESGASIKVDSSSAEGDDCIIFISAKEFFEDP-SPTIDAALRLQPRCSEKAE-----RES 375
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
+ + RLLVPS++ LIGK G++I ++ + A++R+LS + P +ED+ +V++
Sbjct: 376 SDSVVTTRLLVPSSRIGCLIGKGGAIISEMRSVTRANIRILSKENLPKVASEDDEMVQIT 435
Query: 225 GEAAKVLKALEAVVGHLRKFLVDQ 248
GE AL V L+ L ++
Sbjct: 436 GELNVASNALLQVTLRLKANLFER 459
>gi|386771588|ref|NP_001246874.1| mushroom-body expressed, isoform I [Drosophila melanogaster]
gi|383292064|gb|AFH04545.1| mushroom-body expressed, isoform I [Drosophila melanogaster]
Length = 539
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 16/155 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSG---------- 73
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+A F ++ E D G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 74 TTNAIFSAFTLITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 133
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S++V S ER V + G A ++ + +
Sbjct: 134 CSIQVAS----EMLPNSTERAVTLSGSAEQITQCI 164
>gi|224095794|ref|XP_002310483.1| predicted protein [Populus trichocarpa]
gi|222853386|gb|EEE90933.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 2/169 (1%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFR++ +VG +IG+ G ++ +T A I + +R++ ++ E PE+ S
Sbjct: 314 VFRILCNNDRVGGVIGKGGNIVTALQNETGATISIGPKVAGCDERLITVTASENPESRYS 373
Query: 139 PAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
A V VF R V + E +D +S + SVRL+V Q L+GK G++I +++
Sbjct: 374 AAQKTVVLVFSRVVESVIEKGLDPGSSEGSPVSVRLVVSPNQVGCLLGKGGTIISEMRKA 433
Query: 198 SGASVRVLSADEA-PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
+ S+R++ D+ P V E++ +VE+ G+ V ++ + G LR L
Sbjct: 434 TSTSIRIIGRDQGNPKCVPENDHVVEILGDFLNVKDSIYHITGRLRDNL 482
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 96/177 (54%), Gaps = 14/177 (7%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
GH +FR++ ++G IIG+ G +IK + T A+I++ D P+ SPDR++ I G +
Sbjct: 56 GHVLFRLLCHDSRIGGIIGKGGNIIKGLQQQTGAKIRIEDAPLESPDRVITIVGSVTQSS 115
Query: 136 ----------PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIG 185
VS +A VRVF+R+ + + D+ A G C RLL + +IG
Sbjct: 116 VVFSGIGSAIEVSKGQEALVRVFERILEV-AAESDSVAGGLVSC--RLLAEISSVGAVIG 172
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
K G ++ I+++ G V+VL D+ P + +E ++E++G+ + V K L AV L+
Sbjct: 173 KGGKTVEKIRKDCGCKVKVL-IDKLPACASSNEEMIEIEGDVSAVKKGLVAVSHRLQ 228
>gi|321475563|gb|EFX86525.1| hypothetical protein DAPPUDRAFT_307836 [Daphnia pulex]
Length = 364
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 20/159 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE++K+ E++ ARI + DG S P+RIV I+G
Sbjct: 20 IRLLMAGKEVGSIIGKKGEIVKRFREESGARINISDG--SCPERIVTITGTT-------- 69
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKSIQ 195
DA + F + E +V +G A ++RL++P++Q +LIGK GS IK I+
Sbjct: 70 --DAIFKAFNLICKKLEEEVGGPLAGTAIPRPPITLRLIMPASQCGSLIGKGGSKIKEIR 127
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
E +GASV V++++ P ER V + G + + + +
Sbjct: 128 EITGASV-VVASEMLP---NSTERAVTVSGTSDAITQCI 162
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ--ESRGLPDEITVEIKGTSSQV 399
Q +Q M +P IIG GGT I IR+ SGA+I + E R E T+ I GT+ V
Sbjct: 268 QQSQEMAVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEDRESSSERTITITGTAESV 327
Query: 400 QLAQQLIQ 407
LAQ LI
Sbjct: 328 ALAQYLIN 335
>gi|281366597|ref|NP_001163493.1| mushroom-body expressed, isoform E [Drosophila melanogaster]
gi|386771584|ref|NP_001246873.1| mushroom-body expressed, isoform F [Drosophila melanogaster]
gi|134085557|gb|ABO52837.1| IP17311p [Drosophila melanogaster]
gi|272455272|gb|ACZ94764.1| mushroom-body expressed, isoform E [Drosophila melanogaster]
gi|383292063|gb|AFH04544.1| mushroom-body expressed, isoform F [Drosophila melanogaster]
Length = 557
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 16/155 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSG---------- 73
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+A F ++ E D G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 74 TTNAIFSAFTLITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 133
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S++V S ER V + G A ++ + +
Sbjct: 134 CSIQVAS----EMLPNSTERAVTLSGSAEQITQCI 164
>gi|431913482|gb|ELK15157.1| Poly(rC)-binding protein 4 [Pteropus alecto]
Length = 403
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 149/353 (42%), Gaps = 57/353 (16%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE 131
PG RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 12 PGLSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG-- 67
Query: 132 EPEAPVSPAMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINL 183
+ VF VS L E+ A A+G ++RL++P++Q +L
Sbjct: 68 -----------STAAVFHAVSMIAFKLDEDLCSATANGGNISRPPVTLRLVIPASQCGSL 116
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
IGK G+ IK I+E +GA V+V + D P ER V + G ++ + + + +
Sbjct: 117 IGKAGTKIKEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILE 172
Query: 244 FLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE 303
+P Y+ S+S + L A ++ +Y T E L++
Sbjct: 173 SPPKGATIP-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTPAEVTKLQQL 219
Query: 304 PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGT 363
+ G+ + G DP T +Q +P +IG G+
Sbjct: 220 SGHAVPFASPGM-VPGLDPGAQT----------------SSQEFLVPNDLIGCVIGRQGS 262
Query: 364 SIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 263 KISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|449473856|ref|XP_004186185.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC) binding protein 4
[Taeniopygia guttata]
Length = 245
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 105/199 (52%), Gaps = 26/199 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ ++GSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 25 LRMLMHGKEIGSIIGKKGETVKRIREQSTARITISEG--SCPERITTITG---------- 72
Query: 140 AMDAAVRVFKRVSGLPENDV----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
+ DA R ++ E D+ D ++G A ++RL++P++Q +LIGK G+ I+ I+
Sbjct: 73 STDAVFRAVSMIAFKLEEDLGAGGDGVSAGRAPVTLRLVIPASQCGSLIGKAGAKIREIR 132
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV------GHLRKFLVDQG 249
E++GA V+V + D P ER V + G +++ + + ++FLV
Sbjct: 133 ESTGAQVQV-AGDLLP---NSTERAVTVSGVPDTIIQCVRQICLDPSSQSSSQEFLVPND 188
Query: 250 VLPLFEKTYNASISQERQV 268
++ + + IS+ RQ+
Sbjct: 189 LIGCIIGRHGSKISEIRQM 207
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 20/126 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEEPEAPVS 138
R+++P + GS+IG+ G I++ E T A+++V D +S +R V +SG P
Sbjct: 108 LRLVIPASQCGSLIGKAGAKIREIRESTGAQVQVAGDLLPNSTERAVTVSG-----VP-- 160
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
D ++ +++ P + ++ LVP+ +IG+ GS I I++ S
Sbjct: 161 ---DTIIQCVRQICLDPSSQSSSQ---------EFLVPNDLIGCIIGRHGSKISEIRQMS 208
Query: 199 GASVRV 204
GA +++
Sbjct: 209 GAHIKI 214
>gi|432112571|gb|ELK35287.1| Poly(rC)-binding protein 2 [Myotis davidii]
Length = 453
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 159/364 (43%), Gaps = 61/364 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRY 310
K ++ + Q+R T +D +S T S + P LE
Sbjct: 180 PKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPS----------------MCLNPDLEGP- 221
Query: 311 RLSGISIYGQ----DPALSTIRSSALGRASGPIVTQIT--------------QTMQIPIS 352
L +I GQ P L+ + A+ ++ P+ T + IP
Sbjct: 222 PLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPND 281
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
IIG G I I + SGA I + + V I G+++ + LAQ LI + N
Sbjct: 282 LIGCIIGRQGAKINEIHQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLEN 341
Query: 413 HKES 416
K S
Sbjct: 342 AKPS 345
>gi|391348567|ref|XP_003748518.1| PREDICTED: poly(rC)-binding protein 3-like [Metaseiulus
occidentalis]
Length = 418
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 17/163 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RMI+ +VGSIIG+KG+ IKK ED+ A+I + DG + P+RIV ++G E +
Sbjct: 14 VRMIMQGKEVGSIIGKKGDNIKKFREDSGAKINISDG--TCPERIVTVTGSTEC---ILK 68
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF--------CSVRLLVPSTQAINLIGKQGSLI 191
A F+ +S L + ++ +G ++RL+VP++Q +LIGK GS I
Sbjct: 69 AFSLICAKFEEMSSLSGSPTESALNGQKVLPGQTPPPVTLRLIVPASQCGSLIGKAGSKI 128
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
+ I+E +GASV+V S ER V + G A V K +
Sbjct: 129 REIREITGASVQVASE----MLPNSTERTVTVAGTADAVTKCI 167
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
TQ MQIP +IG GG I IR+ SGA I + + E V I GT + LAQ
Sbjct: 306 TQEMQIPNDLIGCVIGKGGQKINEIRQLSGATIKISSTEEGSKERCVSISGTPEAINLAQ 365
Query: 404 QLIQ----------EYMNNHKE--SITSSYG 422
LI +NH+ S+++S+G
Sbjct: 366 YLINTRQVSLRKASRLQSNHRRDPSVSASFG 396
>gi|7486302|pir||T04533 hypothetical protein F28J12.30 - Arabidopsis thaliana
gi|2832642|emb|CAA16717.1| putative protein [Arabidopsis thaliana]
gi|7268630|emb|CAB78839.1| putative protein [Arabidopsis thaliana]
Length = 846
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 15/181 (8%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKEEPEA- 135
V+R++ P+ VG +IG+ G++I +T+A+IKV D R++ I S KE+ E
Sbjct: 345 VYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEI 404
Query: 136 --------PVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGK 186
P+ A DA ++V+ V+ EN+ RLLVP +Q+ +LIGK
Sbjct: 405 GFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGK 464
Query: 187 QGSLIKSIQENSGASVRVLSADEA-PFYVT--EDERIVEMQGEAAKVLKALEAVVGHLRK 243
G IK I+ + ASV+V+S D + P +V E + +V + GE V +AL AV + K
Sbjct: 465 AGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYK 524
Query: 244 F 244
Sbjct: 525 I 525
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 43/208 (20%)
Query: 52 SALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARI 111
S+LP + G ++ EE VF+++ P+ + +IG+ G IK+ E + + I
Sbjct: 603 SSLPVTHGFGGSSRSEE---------LVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCI 653
Query: 112 KVLDGPVSSPDR--IVLISGKE--------------EPEAPVSPAMDAAVRVFKRVSGLP 155
+V D D +++++ E P+ S A++A + + + +
Sbjct: 654 EVNDSRTKCGDDECVIIVTATEILFCCLSTPFVFMQSPDDMKSMAVEAVLLLQEYI---- 709
Query: 156 ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVT 215
ND DA+ ++LLV S +IGK GS+I I++ + A++ +
Sbjct: 710 -NDEDAEN-----VKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKG-------- 755
Query: 216 EDERIVEMQGEAAKVLKALEAVVGHLRK 243
+ + +VE+ GE + V AL +V LR+
Sbjct: 756 KKDDLVEVSGEVSSVRDALIQIVLRLRE 783
>gi|15236863|ref|NP_193572.1| KH domain-containing protein [Arabidopsis thaliana]
gi|15214341|sp|P58223.1|Y4837_ARATH RecName: Full=KH domain-containing protein At4g18375
gi|22136632|gb|AAM91635.1| unknown protein [Arabidopsis thaliana]
gi|332658636|gb|AEE84036.1| KH domain-containing protein [Arabidopsis thaliana]
Length = 606
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 163/361 (45%), Gaps = 54/361 (14%)
Query: 52 SALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARI 111
S+LP + G ++ EE VF+++ P+ + +IG+ G IK+ E + + I
Sbjct: 295 SSLPVTHGFGGSSRSEE---------LVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCI 345
Query: 112 KVLDGPVSSPDR--IVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFC 169
+V D D +++++ E P+ S A++A + + + + ND DA+
Sbjct: 346 EVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQEYI-----NDEDAEN-----V 395
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++LLV S +IGK GS+I I++ + A++ + + + +VE+ GE +
Sbjct: 396 KMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKG--------KKDDLVEVSGEVSS 447
Query: 230 VLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEY 289
V AL +V LR+ + L +K A+ R+ D S + + +A T
Sbjct: 448 VRDALIQIVLRLREDV-------LGDKDSVAT----RKPPARTDNCSFLSGSSNAGYT-- 494
Query: 290 TPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQI 349
PS + S SG YG PA + S + G + + + I
Sbjct: 495 LPSF------------MSSMASTSGFHGYGSFPAGDNVLGSTGPYSYGRLPSSSALEILI 542
Query: 350 PISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEY 409
P ++G GG ++ENIRR SGA+I + S+ + + GT Q++ A+ L+Q +
Sbjct: 543 PAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMRCAENLVQAF 602
Query: 410 M 410
+
Sbjct: 603 V 603
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 15/181 (8%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKEEPEA- 135
V+R++ P+ VG +IG+ G++I +T+A+IKV D R++ I S KE+ E
Sbjct: 37 VYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEI 96
Query: 136 --------PVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGK 186
P+ A DA ++V+ V+ EN+ RLLVP +Q+ +LIGK
Sbjct: 97 GFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGK 156
Query: 187 QGSLIKSIQENSGASVRVLSADEA-PFYVT--EDERIVEMQGEAAKVLKALEAVVGHLRK 243
G IK I+ + ASV+V+S D + P +V E + +V + GE V +AL AV + K
Sbjct: 157 AGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYK 216
Query: 244 F 244
Sbjct: 217 I 217
>gi|380024759|ref|XP_003696159.1| PREDICTED: poly(rC)-binding protein 3-like [Apis florea]
Length = 560
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 15/162 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G P +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG------PTNS 71
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF---CSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A + K+ D + SG ++RL+VP++Q +LIGK GS IK I+E
Sbjct: 72 IFKAFTLICKKFEEWCSQFHDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIKEIRE 131
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+GAS++V S D P ER V + G + + + + +
Sbjct: 132 VTGASIQVAS-DMLP---NSTERAVTISGTSEAITQCIYHIC 169
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 325 STIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV---QES 381
S +R+S R P T M +P IIG GGT I IR+ SGA+I + +E
Sbjct: 349 SQLRTSNTNRQQ-PAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEER 407
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLI 406
G + T+ I G V LAQ LI
Sbjct: 408 EGGATDRTITITGNPDAVSLAQYLI 432
>gi|345320820|ref|XP_001521752.2| PREDICTED: poly(rC)-binding protein 3-like [Ornithorhynchus
anatinus]
Length = 261
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER V + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQIC 163
>gi|412992928|emb|CCO16461.1| predicted protein [Bathycoccus prasinos]
Length = 703
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 97/170 (57%), Gaps = 7/170 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS--PDRIVLISGKEEPEAP 136
++R++ P + GS+IG+ GE +K+ D+ A+IKV + PV S +R++ I ++ +
Sbjct: 266 LYRLLCPNARAGSVIGKNGEKVKQLQRDSGAKIKV-EPPVDSTIAERVIAIEAQDVDDPT 324
Query: 137 V-SPAMDAAVRVFKRVSGLPEND--VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKS 193
V +P+ A +R+ + + E + + A +RLL+PS+Q N+IG+ G++I+
Sbjct: 325 VWAPSQIALLRIVETIVLDAERNTTIGAAEENNGHIVIRLLLPSSQIRNVIGRFGNVIER 384
Query: 194 IQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK-VLKALEAVVGHLR 242
I+ SG+ VRVL + E P ++ ++++ E+ + V AL + LR
Sbjct: 385 IRVGSGSHVRVLPSSETPRCAKRNDEVLQISAESMENVASALAMITTQLR 434
>gi|30684386|ref|NP_849406.1| KH domain-containing protein [Arabidopsis thaliana]
gi|24762211|gb|AAN64172.1| putative KH domain protein [Arabidopsis thaliana]
gi|332658635|gb|AEE84035.1| KH domain-containing protein [Arabidopsis thaliana]
Length = 532
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 15/181 (8%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKEEPEA- 135
V+R++ P+ VG +IG+ G++I +T+A+IKV D R++ I S KE+ E
Sbjct: 37 VYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEI 96
Query: 136 --------PVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGK 186
P+ A DA ++V+ V+ EN+ RLLVP +Q+ +LIGK
Sbjct: 97 GFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGK 156
Query: 187 QGSLIKSIQENSGASVRVLSADEA-PFYVT--EDERIVEMQGEAAKVLKALEAVVGHLRK 243
G IK I+ + ASV+V+S D + P +V E + +V + GE V +AL AV + K
Sbjct: 157 AGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYK 216
Query: 244 F 244
Sbjct: 217 I 217
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 20/167 (11%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDR--IVLISGKEEPEAP 136
VF+++ P+ + +IG+ G IK+ E + + I+V D D +++++ E P+
Sbjct: 313 VFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDM 372
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
S A++A + + + + ND DA+ ++LLV S +IGK GS+I I++
Sbjct: 373 KSMAVEAVLLLQEYI-----NDEDAEN-----VKMQLLVSSKVIGCVIGKSGSVINEIRK 422
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
+ A++ + + + +VE+ GE + V AL +V LR+
Sbjct: 423 RTNANICISKG--------KKDDLVEVSGEVSSVRDALIQIVLRLRE 461
>gi|397521979|ref|XP_003846057.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 2 [Pan
paniscus]
Length = 465
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 166/361 (45%), Gaps = 43/361 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGV-LPL 253
+E++GA V+V + D P ER + + G +++ ++ + + +GV +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC--VVMLESPKGVTIPY 177
Query: 254 FEKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER-----EP 304
K ++ + Q+R T +D +S T S E+ ++ +P
Sbjct: 178 RPKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQP 236
Query: 305 QLESRYRL----SGISIYGQDPALSTIRSSA---LGRASGPIVTQITQT--MQIPISYAE 355
L ++L S + + S I SS+ G +G + T + + IP
Sbjct: 237 DLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIG 296
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
IIG G I IR+ SGA I + + V I G+++ + LAQ LI + N K
Sbjct: 297 CIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLENAKP 356
Query: 416 S 416
S
Sbjct: 357 S 357
>gi|340726176|ref|XP_003401437.1| PREDICTED: poly(rC)-binding protein 3-like [Bombus terrestris]
Length = 466
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 15/162 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G P +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG------PTNS 71
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF---CSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A + K+ D + SG ++RL+VP++Q +LIGK GS IK I+E
Sbjct: 72 IFKAFTLICKKFEEWCSQFHDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIKEIRE 131
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+GAS++V S D P ER V + G + + + + +
Sbjct: 132 VTGASIQVAS-DMLP---NSTERAVTISGTSEAITQCIYHIC 169
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 325 STIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV---QES 381
S +R+S R P T M +P IIG GGT I IR+ SGA+I + +E
Sbjct: 255 SQLRTSNTNRQQ-PAGNNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEER 313
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLI 406
G + T+ I G V LAQ LI
Sbjct: 314 EGGATDRTITITGNPDAVALAQYLI 338
>gi|350405177|ref|XP_003487350.1| PREDICTED: poly(rC)-binding protein 3-like [Bombus impatiens]
Length = 466
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 15/162 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G P +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG------PTNS 71
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF---CSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A + K+ D + SG ++RL+VP++Q +LIGK GS IK I+E
Sbjct: 72 IFKAFTLICKKFEEWCSQFHDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIKEIRE 131
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+GAS++V S D P ER V + G + + + + +
Sbjct: 132 VTGASIQVAS-DMLP---NSTERAVTISGTSEAITQCIYHIC 169
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 325 STIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV---QES 381
S +R+S R P T M +P IIG GGT I IR+ SGA+I + +E
Sbjct: 255 SQLRTSNTNRQQ-PAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEER 313
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLI 406
G + T+ I G V LAQ LI
Sbjct: 314 EGGATDRTITITGNPDAVALAQYLI 338
>gi|328778258|ref|XP_391921.3| PREDICTED: poly(rC)-binding protein 3-like [Apis mellifera]
Length = 466
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 15/162 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G P +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG------PTNS 71
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF---CSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A + K+ D + SG ++RL+VP++Q +LIGK GS IK I+E
Sbjct: 72 IFKAFTLICKKFEEWCSQFHDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIKEIRE 131
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+GAS++V S D P ER V + G + + + + +
Sbjct: 132 VTGASIQVAS-DMLP---NSTERAVTISGTSEAITQCIYHIC 169
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 325 STIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV---QES 381
S +R+S R P T M +P IIG GGT I IR+ SGA+I + +E
Sbjct: 255 SQLRTSNTNRQQ-PAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEER 313
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLI 406
G + T+ I G V LAQ LI
Sbjct: 314 EGGATDRTITITGNPDAVSLAQYLI 338
>gi|417398902|gb|JAA46484.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 320
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 151/353 (42%), Gaps = 71/353 (20%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGVL 251
+E++GA V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVT 179
Query: 252 ----------PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE 301
P+ A Q + D + LH Q A+ + P T + F
Sbjct: 180 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMTHGNTGF-- 234
Query: 302 REPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVG 361
AS TQ T + IP + IIG
Sbjct: 235 --------------------------------SASLDASTQTTHELTIPNNLIGCIIGRQ 262
Query: 362 GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
G +I IR+ SGA I + V I G+++ + LAQ LI +++ K
Sbjct: 263 GANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK 315
>gi|13605589|gb|AAK32788.1|AF361620_1 AT5g46190/MCL19_25 [Arabidopsis thaliana]
Length = 640
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 171/369 (46%), Gaps = 49/369 (13%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKEEPE-- 134
V+R++ P +GS+IG+ G++I ++TRARIKV+D +R++ I S E+ +
Sbjct: 45 VYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIV 104
Query: 135 ----------APVSPAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINL 183
P+ A A ++V V+ L + K F RLLVPS+Q +
Sbjct: 105 DIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIV 164
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEA-PFYVT--EDERIVEMQGEAAKVLKALEAVVGH 240
IGK GS+IK+I+ + A+V+V+S D + P + + + IV + GE V KAL AV
Sbjct: 165 IGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSAI 224
Query: 241 LRKFLVDQGV-LPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLF 299
+ K + + L + ASI + + ++ L+ + S S+ F
Sbjct: 225 MYKVSPREQIPLDTTVQEVPASIIIPSDLSIYP-QAGLYPSQDSIFQHGANVSS-----F 278
Query: 300 LEREPQLESRYRLSGISIYGQDPA--LSTIRSSALGRASGPIVTQITQTMQIPI----SY 353
+ PQ YG++ A + +SAL G + ++ + I + S
Sbjct: 279 IGTLPQG-----------YGENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVICSSSK 327
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQESR-GLPDEITVEIKGTSSQVQL------AQQLI 406
+IG GG +I+ IR+ SG+ I V +SR D+ + + T S L A L+
Sbjct: 328 IGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLL 387
Query: 407 QEYMNNHKE 415
QE +N+ E
Sbjct: 388 QEKINDEDE 396
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 152/353 (43%), Gaps = 37/353 (10%)
Query: 54 LPQSTGPDAA---------AVPEEKKWPG--WPGHCVFRMIVPVLKVGSIIGRKGELIKK 102
LPQ G +AA A+P + G ++I K+G +IG+ G IK
Sbjct: 282 LPQGYGENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKG 341
Query: 103 TCEDTRARIKVLDGPVSSPDRIVL-ISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA 161
+ + + I+V D + D V+ ++ E P+ S A++A + + ++++ E+ V
Sbjct: 342 IRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLLQEKINDEDEDKV-- 399
Query: 162 KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
++LLV S +IGK GS+I I++ + A + + + P ++ +V
Sbjct: 400 --------KMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELV 451
Query: 222 EMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAAT 281
E+ GE + V AL +V LR + L ++ + + E SS + T
Sbjct: 452 EISGEVSNVRDALIQIVLRLRDDV-------LRDRETGSRNQPPARSENNNFFSSSSSNT 504
Query: 282 QSAISTEYTPST-RRESLFLEREPQLESRYRL----SGISIYGQDPALSTIRSSALGRAS 336
A+ + S + S+ R P+ S + GI YG P +T S +S
Sbjct: 505 GLALPQSFMSSVPQVASVDFNRRPETGSSMSMLPSSGGIYGYGSFPVGNTSYGSNSSYSS 564
Query: 337 ---GPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPD 386
G + T ++IP + ++G GG +++NIRR I + S L D
Sbjct: 565 NLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRVCLIFIFIFPSSLLSD 617
>gi|395752934|ref|XP_002830848.2| PREDICTED: poly(rC)-binding protein 3 [Pongo abelii]
Length = 432
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 89/158 (56%), Gaps = 21/158 (13%)
Query: 86 VLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAV 145
+ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G DA
Sbjct: 52 LWEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP----------TDAIF 99
Query: 146 RVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA
Sbjct: 100 KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 159
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
V+V + D P ER V + G +++ ++ +
Sbjct: 160 QVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQIC 193
>gi|291409711|ref|XP_002721142.1| PREDICTED: poly(rC) binding protein 2-like isoform 1 [Oryctolagus
cuniculus]
Length = 362
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/368 (25%), Positives = 173/368 (47%), Gaps = 48/368 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ ++ A+ ++RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPLVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGV- 250
+E++GA V+V + D P ER + + G +++ ++ H+ +++ +GV
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVK----HICVVMLESPPKGVT 175
Query: 251 LPLFEKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER---- 302
+P K ++ + Q+R T +D +S T S E+ ++
Sbjct: 176 IPYRPKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAI 234
Query: 303 -EPQLESRYRL----SGISIYGQDPALSTIRSSA---LGRASGPIVTQITQT--MQIPIS 352
+P L ++L S + + S I SS+ G +G + T + + IP
Sbjct: 235 PQPDLTKLHQLAVQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPND 294
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
IIG G I I + SGA+I + + + V I G+++ + LAQ LI +++
Sbjct: 295 LIGCIIGCQGAKINEICQMSGALIKIANTVEGSTDRQVTITGSAASISLAQYLINVRLSS 354
Query: 413 HKESITSS 420
+ SS
Sbjct: 355 ETGGMGSS 362
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|291409713|ref|XP_002721143.1| PREDICTED: poly(rC) binding protein 2-like isoform 2 [Oryctolagus
cuniculus]
Length = 340
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 167/369 (45%), Gaps = 72/369 (19%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ ++ A+ ++RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPLVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGV- 250
+E++GA V+V + D P ER + + G +++ ++ H+ +++ +GV
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVK----HICVVMLESPPKGVT 175
Query: 251 LPLFEKTYNASI----SQERQVETWADKS------------SLHAATQSAISTEYTPSTR 294
+P K ++ + Q+R T +DK+ L Q A+ + P T
Sbjct: 176 IPYRPKPSSSPVIFAGGQDR-YSTGSDKAYTIQGQYAIPQPDLTKLHQLAVQQSHFPMTH 234
Query: 295 RESLFLERE---PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPI 351
+ F E P+++ + G D + T + + IP
Sbjct: 235 GNTGFSGIESSSPEVKGYWA-------GLDASAQT----------------TSHELTIPN 271
Query: 352 SYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMN 411
IIG G I I + SGA+I + + + V I G+++ + LAQ LI ++
Sbjct: 272 DLIGCIIGCQGAKINEICQMSGALIKIANTVEGSTDRQVTITGSAASISLAQYLINVRLS 331
Query: 412 NHKESITSS 420
+ + SS
Sbjct: 332 SETGGMGSS 340
>gi|339258170|ref|XP_003369271.1| putative KH domain protein [Trichinella spiralis]
gi|316966532|gb|EFV51093.1| putative KH domain protein [Trichinella spiralis]
Length = 640
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 65/343 (18%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ G++IG+ GE IK+ A + + D S+P+R++ IS A V+
Sbjct: 284 LRLLIASKSAGAVIGKGGENIKRLRSQYCASVNIPDS--STPERVLNISC-----ANVAT 336
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
D + R+ D SG VR+LV +QA +IG+ G IK +++ +G
Sbjct: 337 LTDCVSDLIPRL--------DDGKSGPQEAEVRMLVHQSQAGAIIGRAGFKIKELRDITG 388
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGVLPLFE- 255
A +RV S + AP ER+++ G+ K++ A+ H+++ + +GV L++
Sbjct: 389 AGIRVYS-ECAPL---STERVIQFSGDKEKIVNAIR----HVKEICEETPIKGVERLYDA 440
Query: 256 KTYNASISQE----------RQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQ 305
Y+ S + + R T S +H+++ +A + +T E P
Sbjct: 441 NNYDMSYALDYGGYTTDRNWRSNSTTRRSSGIHSSSPAASTPHFTGVN-------EISPM 493
Query: 306 LESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSI 365
Y S +S+Y ++ ++T+ Q+T IP IIG GG I
Sbjct: 494 QALGY--SPMSLYAEN-LIATV--------------QVT----IPKELGGTIIGKGGERI 532
Query: 366 ENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQE 408
IR SGA I V DE + I GT+SQ++L Q L+Q+
Sbjct: 533 NRIREESGAQIVVDPPTPDSDERIITISGTTSQIKLGQYLLQQ 575
>gi|402862114|ref|XP_003895414.1| PREDICTED: poly(rC)-binding protein 3-like, partial [Papio anubis]
Length = 327
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 95
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 96 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER V + G +++ ++ +
Sbjct: 156 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQIC 195
>gi|351698877|gb|EHB01796.1| Poly(rC)-binding protein 4 [Heterocephalus glaber]
Length = 443
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 149/345 (43%), Gaps = 57/345 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 60 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 107
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G + ++RL++P++Q +LIGK G+ I
Sbjct: 108 ---STAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKI 164
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 165 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 220
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ +Y T E L+ +
Sbjct: 221 P-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTPAEVTKLQ---------Q 258
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
LSG ++ P++ P +Q +P +IG G+ I IR+
Sbjct: 259 LSGHAVPFASPSVVP--------GLDPSAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 310
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
SGA I + E V I G+ + LAQ LI + K +
Sbjct: 311 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 355
>gi|432092458|gb|ELK25073.1| Poly(rC)-binding protein 4 [Myotis davidii]
Length = 403
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 149/345 (43%), Gaps = 57/345 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCSAPANGGTVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ ++Y T E L+ +
Sbjct: 181 P-----YHPSLSLGTVL--------LSANQGFSVQSQYGGVTPAEVTKLQ---------Q 218
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
LSG ++ P++ P +Q +P +IG G+ I IR+
Sbjct: 219 LSGHAVPFGSPSMVP--------GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
SGA I + E V I G+ + LAQ LI + K +
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|12230430|sp|P57724.1|PCBP4_MOUSE RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|9957163|gb|AAG09239.1|AF176328_1 alphaCP-4 [Mus musculus]
Length = 403
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 149/345 (43%), Gaps = 57/345 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G + ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ +Y T E L+ +
Sbjct: 181 P-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTPAEVTKLQ---------Q 218
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
LSG ++ P++ P +Q +P +IG G+ I IR+
Sbjct: 219 LSGHAVPFASPSVVP--------GMDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
SGA I + E V I G+ + LAQ LI + K +
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|328709627|ref|XP_003244018.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Acyrthosiphon
pisum]
Length = 525
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 9/146 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ISG E +
Sbjct: 15 LRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTISGSTEA---IYK 69
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + + A A G ++RL+VP++Q +LIGK G+ IK I+E +G
Sbjct: 70 AFSLICTKVEEFIEMQNGKTGATAIGKCGMTLRLIVPASQCGSLIGKGGNKIKEIREATG 129
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQG 225
A ++V S D P ER V + G
Sbjct: 130 AQIQVAS-DVLP---QSTERAVTLTG 151
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-----QESRGLPDEITVEIKGTS 396
Q T M +P IIG GGT I IR+ SGA+I + +E D T+ I G
Sbjct: 313 QQTHEMTVPNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEDREGSASTDR-TITITGNP 371
Query: 397 SQVQLAQQLIQEYMNNHKESITSS 420
V LAQ LI + + S+ S
Sbjct: 372 DSVALAQYLINMSLEIQRASMLQS 395
>gi|73985377|ref|XP_849987.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Canis lupus
familiaris]
gi|301767222|ref|XP_002919000.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
Length = 403
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 162/384 (42%), Gaps = 63/384 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ +Y T E L+ +
Sbjct: 181 P-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTPAEVTKLQ---------Q 218
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
LSG ++ P++ P +Q +P +IG G+ I IR+
Sbjct: 219 LSGHAVPFASPSMVP--------GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPS 431
SGA I + E V I G+ + LAQ LI + K + + G T
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPTDLPAP 330
Query: 432 YPQLGNSSYPSSSLSTQPYGGYGS 455
+ S P ++L T P G G+
Sbjct: 331 F------SPPLTALPTAPPGLLGT 348
>gi|410951299|ref|XP_003982335.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Felis catus]
Length = 403
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 162/384 (42%), Gaps = 63/384 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ +Y T E L+ +
Sbjct: 181 P-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTPAEVTKLQ---------Q 218
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
LSG ++ P++ P +Q +P +IG G+ I IR+
Sbjct: 219 LSGHAVPFASPSMVP--------GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPS 431
SGA I + E V I G+ + LAQ LI + K + + G T
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPTDLPAP 330
Query: 432 YPQLGNSSYPSSSLSTQPYGGYGS 455
+ S P ++L T P G G+
Sbjct: 331 F------SPPLTALPTAPPGLLGT 348
>gi|386771590|ref|NP_001246875.1| mushroom-body expressed, isoform K [Drosophila melanogaster]
gi|383292065|gb|AFH04546.1| mushroom-body expressed, isoform K [Drosophila melanogaster]
Length = 573
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 12/155 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGT------TNA 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + K+ D G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 78 IFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 137
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S++V S ER V + G A ++ + +
Sbjct: 138 CSIQVASE----MLPNSTERAVTLSGSAEQITQCI 168
>gi|432110248|gb|ELK34019.1| Poly(rC)-binding protein 3 [Myotis davidii]
Length = 347
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 58 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 107
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 108 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 165
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER V + G +++ ++ +
Sbjct: 166 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQIC 205
>gi|347300276|ref|NP_001231441.1| poly(rC) binding protein 2 [Sus scrofa]
gi|417399505|gb|JAA46755.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 353
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 166/372 (44%), Gaps = 65/372 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGV- 250
+E++GA V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVT 179
Query: 251 LPLFEKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQL 306
+P K ++ + Q+R T +D +S T S + P L
Sbjct: 180 IPYRPKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPS----------------MCLNPDL 222
Query: 307 ESRYRLSGISIYGQ----DPALSTIRSSALGRASGPIVTQIT--------------QTMQ 348
E L +I GQ P L+ + A+ ++ P+ T +
Sbjct: 223 EGP-PLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELT 281
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQE 408
IP IIG G I IR+ SGA I + + V I G+++ + LAQ LI
Sbjct: 282 IPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINV 341
Query: 409 YMNNHKESITSS 420
+++ + SS
Sbjct: 342 RLSSETGGMGSS 353
>gi|27503479|gb|AAH42440.1| Pcbp3 protein [Mus musculus]
Length = 249
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER V + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQIC 163
>gi|227497228|ref|NP_067542.3| poly(rC)-binding protein 4 [Mus musculus]
gi|14715061|gb|AAH10694.1| Poly(rC) binding protein 4 [Mus musculus]
Length = 403
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 145/360 (40%), Gaps = 87/360 (24%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G + ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSG-------------------------- 154
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
+A I RQ+ +S AT Y PS ++ L
Sbjct: 155 -----VPDAIILCVRQICAVILESPPKGAT-----IPYHPSLSLGTVLLSAN-------- 196
Query: 312 LSGISIYGQDPALSTIRSSALGRASG---------------PIVTQITQTMQIPISYAED 356
G S+ GQ A++ + L + SG P +Q +P
Sbjct: 197 -QGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQTSSQEFLVPNDLIGC 255
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+IG G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|149728835|ref|XP_001494599.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Equus
caballus]
Length = 403
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 162/384 (42%), Gaps = 63/384 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A +G + ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPTNGGSVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ +Y T E L+ +
Sbjct: 181 P-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTSAEVTKLQ---------Q 218
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
LSG ++ P++ P +Q +P +IG G+ I IR+
Sbjct: 219 LSGHAVPFASPSMVP--------GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPS 431
SGA I + E V I G+ + LAQ LI + K + + G T
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSTPTDLPAP 330
Query: 432 YPQLGNSSYPSSSLSTQPYGGYGS 455
+ S P ++L T P G G+
Sbjct: 331 F------SPPLTALPTAPPGLLGT 348
>gi|348581993|ref|XP_003476761.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Cavia porcellus]
Length = 403
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 145/360 (40%), Gaps = 87/360 (24%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G + ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSG-------------------------- 154
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
+A I RQ+ +S AT Y PS ++ L
Sbjct: 155 -----VPDAIILCVRQICAVILESPPKGAT-----IPYHPSLSLGTVLLSAN-------- 196
Query: 312 LSGISIYGQDPALSTIRSSALGRASG---------------PIVTQITQTMQIPISYAED 356
G S+ GQ A++ + L + SG P +Q +P
Sbjct: 197 -QGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPAAQTSSQEFLVPNDLIGC 255
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+IG G+ I IR+ SGA I + E + I G+ + LAQ LI + K +
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHITITGSPVSIALAQYLITACLETAKST 315
>gi|328709625|ref|XP_001951678.2| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Acyrthosiphon
pisum]
Length = 411
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 9/146 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ISG E
Sbjct: 15 LRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTISGSTEAIYKAFS 72
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+ V F + A A G ++RL+VP++Q +LIGK G+ IK I+E +G
Sbjct: 73 LICTKVEEFIE---MQNGKTGATAIGKCGMTLRLIVPASQCGSLIGKGGNKIKEIREATG 129
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQG 225
A ++V S D P ER V + G
Sbjct: 130 AQIQVAS-DVLP---QSTERAVTLTG 151
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-----QESRGLPDEITVEIKGTS 396
Q T M +P IIG GGT I IR+ SGA+I + +E D T+ I G
Sbjct: 313 QQTHEMTVPNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEDREGSASTDR-TITITGNP 371
Query: 397 SQVQLAQQLIQ 407
V LAQ LI
Sbjct: 372 DSVALAQYLIN 382
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RL++ + ++IGK+G ++K +E SGA + + S P ERIV + G
Sbjct: 14 TLRLIMQGKEVGSIIGKKGEIVKRFREESGAKINI-SDGSCP------ERIVTISGSTEA 66
Query: 230 VLKALEAVVGHLRKFL 245
+ KA + + +F+
Sbjct: 67 IYKAFSLICTKVEEFI 82
>gi|300798415|ref|NP_001178812.1| poly(rC)-binding protein 4 [Rattus norvegicus]
Length = 403
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 145/360 (40%), Gaps = 87/360 (24%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G + ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSG-------------------------- 154
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
+A I RQ+ +S AT Y PS ++ L
Sbjct: 155 -----VPDAIILCVRQICAVILESPPKGAT-----IPYHPSLSLGTVLLSAN-------- 196
Query: 312 LSGISIYGQDPALSTIRSSALGRASG---------------PIVTQITQTMQIPISYAED 356
G S+ GQ A++ + L + SG P +Q +P
Sbjct: 197 -QGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQTSSQEFLVPNDLIGC 255
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+IG G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|354476373|ref|XP_003500399.1| PREDICTED: poly(rC)-binding protein 4 [Cricetulus griseus]
gi|344252773|gb|EGW08877.1| Poly(rC)-binding protein 4 [Cricetulus griseus]
Length = 403
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 145/360 (40%), Gaps = 87/360 (24%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G + ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSG-------------------------- 154
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
+A I RQ+ +S AT Y PS ++ L
Sbjct: 155 -----VPDAIILCVRQICAVILESPPKGAT-----IPYHPSLSLGTVLLSTN-------- 196
Query: 312 LSGISIYGQDPALSTIRSSALGRASG---------------PIVTQITQTMQIPISYAED 356
G S+ GQ A++ + L + SG P +Q +P
Sbjct: 197 -QGFSVQGQYGAVAPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQTSSQEFLVPNDLIGC 255
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+IG G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|281341187|gb|EFB16771.1| hypothetical protein PANDA_007698 [Ailuropoda melanoleuca]
Length = 323
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 149/336 (44%), Gaps = 43/336 (12%)
Query: 95 RKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGL 154
+KGE +KK E++ ARI + +G + P+RIV I+G DA + F ++
Sbjct: 4 QKGETVKKMREESGARINISEG--NCPERIVTITGP----------TDAIFKAFAMIAYK 51
Query: 155 PENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADE 209
E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA V+V + D
Sbjct: 52 FEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDM 110
Query: 210 APFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASI----SQE 265
P ER V + G +++ ++ + + + +P K + + Q
Sbjct: 111 LP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQV 167
Query: 266 RQVETWADKSSLHAATQSAISTEYTPS----------TRRESLFLEREP-----QLESRY 310
R A ++L Q YT T+ L +++ P Q +
Sbjct: 168 RADPLAASTANLSLLLQPPPLPAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAF 227
Query: 311 RLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRR 370
+ ++ + A + + S+ AS P T + IP IIG GT I IR+
Sbjct: 228 PGEKLPLHSSEEAQNLMGQSSGLDASPPAS---THELTIPNDLIGCIIGRQGTKINEIRQ 284
Query: 371 TSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
SGA I + + E + I GT + + LAQ LI
Sbjct: 285 MSGAQIKIANATEGSSERQITITGTPANISLAQYLI 320
>gi|116007842|ref|NP_001036619.1| mushroom-body expressed, isoform D [Drosophila melanogaster]
gi|113194920|gb|ABI31266.1| mushroom-body expressed, isoform D [Drosophila melanogaster]
Length = 539
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 12/155 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGT------TNA 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + K+ D G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 78 IFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 137
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S++V S ER V + G A ++ + +
Sbjct: 138 CSIQVAS----EMLPNSTERAVTLSGSAEQITQCI 168
>gi|148229933|ref|NP_001086212.1| MGC84166 protein [Xenopus laevis]
gi|49256273|gb|AAH74333.1| MGC84166 protein [Xenopus laevis]
Length = 225
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 66 --DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER V + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQIC 163
>gi|77736367|ref|NP_001029883.1| poly(rC)-binding protein 2 [Bos taurus]
gi|157057549|ref|NP_035172.2| poly(rC)-binding protein 2 isoform 2 [Mus musculus]
gi|291389257|ref|XP_002711065.1| PREDICTED: poly(rC) binding protein 2-like isoform 2 [Oryctolagus
cuniculus]
gi|348581077|ref|XP_003476304.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Cavia porcellus]
gi|426224370|ref|XP_004006344.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Ovis aries]
gi|74268197|gb|AAI03398.1| Poly(rC) binding protein 2 [Bos taurus]
gi|119617114|gb|EAW96708.1| poly(rC) binding protein 2, isoform CRA_c [Homo sapiens]
gi|148672028|gb|EDL03975.1| poly(rC) binding protein 2, isoform CRA_b [Mus musculus]
gi|149031923|gb|EDL86835.1| rCG50739, isoform CRA_d [Rattus norvegicus]
gi|296487920|tpg|DAA30033.1| TPA: poly(rC) binding protein 2 [Bos taurus]
Length = 349
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 162/368 (44%), Gaps = 61/368 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRY 310
K ++ + Q+R T +D +S T S + P LE
Sbjct: 180 PKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPS----------------MCLNPDLEGP- 221
Query: 311 RLSGISIYGQ----DPALSTIRSSALGRASGPIVTQIT--------------QTMQIPIS 352
L +I GQ P L+ + A+ ++ P+ T + IP
Sbjct: 222 PLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPND 281
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
IIG G I IR+ SGA I + + V I G+++ + LAQ LI +++
Sbjct: 282 LIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSS 341
Query: 413 HKESITSS 420
+ SS
Sbjct: 342 ETGGMGSS 349
>gi|383862495|ref|XP_003706719.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Megachile
rotundata]
Length = 560
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 87/162 (53%), Gaps = 15/162 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G P +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG------PTNS 71
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF---CSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A + K+ D ++ G ++RL+VP++Q +LIGK GS IK I+E
Sbjct: 72 IFKAFTLICKKFEEWCSQFHDIQSGGGVPRPPITLRLIVPASQCGSLIGKGGSKIKEIRE 131
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+GAS++V S ER V + G + + + + +
Sbjct: 132 VTGASIQVASE----MLPNSTERAVTISGTSEAITQCIYHIC 169
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 325 STIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV---QES 381
S +R+S R P T M +P IIG GGT I IR+ SGA+I + +E
Sbjct: 349 SQLRTSNTNRQQ-PAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEER 407
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQI-DTGYRPSYPQLGNSSY 440
G + T+ I G V LAQ LI + K ++ + Q +G P G S+
Sbjct: 408 EGGATDRTITITGNPDAVALAQYLISMSVELQKANLEAQNTQTPGSGTTPG--ATGASAS 465
Query: 441 PSSSLST 447
PS++ +T
Sbjct: 466 PSNTTTT 472
>gi|344266063|ref|XP_003405100.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Loxodonta
africana]
Length = 360
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 162/383 (42%), Gaps = 80/383 (20%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ V Q + +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIEC------------VKQICVVML 167
Query: 255 EKTYNASISQERQVETWADKSSLH------AATQSAISTEYTPSTRRESLFLEREPQLES 308
E + A + Q W KSS++ + SA TPS + P LE
Sbjct: 168 EVSPQA--PPKLQCIPWRLKSSIYPQDRYSTGSDSASFPHTTPS-------MCLNPDLEG 218
Query: 309 RYRLSGISIYGQ----DPALSTIRSSALGRASGPIVTQIT-------------------- 344
L +I GQ P L+ + A+ ++ P+ T
Sbjct: 219 P-PLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLD 277
Query: 345 -------QTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSS 397
+ IP IIG G I IR+ SGA I + + V I G+++
Sbjct: 278 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAA 337
Query: 398 QVQLAQQLIQEYMNNHKESITSS 420
+ LAQ LI +++ + SS
Sbjct: 338 SISLAQYLINVRLSSETGGMGSS 360
>gi|115497150|ref|NP_001068751.1| poly(rC)-binding protein 4 [Bos taurus]
gi|119390858|sp|Q0VCU0.1|PCBP4_BOVIN RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|111304931|gb|AAI20010.1| Poly(rC) binding protein 4 [Bos taurus]
gi|296474781|tpg|DAA16896.1| TPA: poly(rC)-binding protein 4 [Bos taurus]
Length = 403
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 161/384 (41%), Gaps = 63/384 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + + S+ +Y T E L+ +
Sbjct: 181 P-----YHPSLSLGTVLLSTNQGFSVQG--------QYGTVTPAEVTKLQ---------Q 218
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
LSG ++ P++ P +Q +P +IG G+ I IR+
Sbjct: 219 LSGHAVPFASPSMVP--------GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPS 431
SGA I + E V I G+ + LAQ LI + K + + G T
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPTDLPAP 330
Query: 432 YPQLGNSSYPSSSLSTQPYGGYGS 455
+ S P ++L T P G G+
Sbjct: 331 F------SPPLTALPTAPPGLLGT 348
>gi|354490195|ref|XP_003507245.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Cricetulus
griseus]
Length = 349
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 96/369 (26%), Positives = 163/369 (44%), Gaps = 63/369 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRY 310
K ++ + Q+R T +D +S T S + P LE
Sbjct: 180 PKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPS----------------MCLNPDLEGP- 221
Query: 311 RLSGISIYGQ----DPALSTIRSSALGRASGPIVTQIT--------------QTMQIPIS 352
L +I GQ P L+ + A+ ++ P+ T + IP
Sbjct: 222 PLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPND 281
Query: 353 YAEDIIGVGGTSIENIRRTSGA-IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMN 411
IIG G I IR+ SGA I T G D V I G+++ + LAQ LI ++
Sbjct: 282 LIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDR-QVTITGSAASISLAQYLINVRLS 340
Query: 412 NHKESITSS 420
+ + SS
Sbjct: 341 SETGGMGSS 349
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|1360003|emb|CAA66619.1| nuclear poly(C)-binding protein, splicevariant E [Mus musculus]
Length = 349
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 164/368 (44%), Gaps = 61/368 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRY 310
K ++ + Q+R T +D +S T S + P LE
Sbjct: 180 PKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPS----------------MSLNPDLEGP- 221
Query: 311 RLSGISIYGQ----DPALSTIRSSALGRASGPIVTQIT----------QTMQIPISYAED 356
L +I GQ P L+ + A+ ++ P+ T QT ++ D
Sbjct: 222 PLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPND 281
Query: 357 IIGV----GGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
+IG G I IR+ SGA I + + V I G+++ + LAQ LI +++
Sbjct: 282 LIGCIIRRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSS 341
Query: 413 HKESITSS 420
+ SS
Sbjct: 342 ETGGMGSS 349
>gi|198465289|ref|XP_001353580.2| GA20351 [Drosophila pseudoobscura pseudoobscura]
gi|198150092|gb|EAL31093.2| GA20351 [Drosophila pseudoobscura pseudoobscura]
Length = 330
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 12/155 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGT------TNA 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + K+ DA G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 78 IFSAFTLITKKFEEWCSQFNDAGKIGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 137
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S++V S ER V + G A ++ + +
Sbjct: 138 CSIQVAS----EMLPNSTERAVTLSGSAEQITQCI 168
>gi|386780909|ref|NP_001247796.1| poly(rC)-binding protein 4 [Macaca mulatta]
gi|332216103|ref|XP_003257183.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|332216105|ref|XP_003257184.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|332216107|ref|XP_003257185.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|402859923|ref|XP_003894386.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Papio anubis]
gi|402859925|ref|XP_003894387.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Papio anubis]
gi|402859927|ref|XP_003894388.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Papio anubis]
gi|403291118|ref|XP_003936646.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403291120|ref|XP_003936647.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
gi|355559585|gb|EHH16313.1| hypothetical protein EGK_11579 [Macaca mulatta]
gi|355746662|gb|EHH51276.1| hypothetical protein EGM_10621 [Macaca fascicularis]
gi|380788331|gb|AFE66041.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|380788333|gb|AFE66042.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|383414707|gb|AFH30567.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|384943104|gb|AFI35157.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
Length = 403
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 146/345 (42%), Gaps = 57/345 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ +Y T E L++ +
Sbjct: 181 P-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFA 227
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
+ + G DP T +Q +P +IG G+ I IR+
Sbjct: 228 TPSV-VPGLDPGTQT----------------SSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
SGA I + E V I G+ + LAQ LI + K +
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|296225349|ref|XP_002758447.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Callithrix
jacchus]
gi|296225353|ref|XP_002758449.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Callithrix
jacchus]
gi|297671175|ref|XP_002813714.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pongo abelii]
gi|297671177|ref|XP_002813715.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Pongo abelii]
gi|395733705|ref|XP_003776278.1| PREDICTED: poly(rC)-binding protein 4 [Pongo abelii]
Length = 403
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 146/345 (42%), Gaps = 57/345 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ +Y T E L++ +
Sbjct: 181 P-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFA 227
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
+ + G DP T +Q +P +IG G+ I IR+
Sbjct: 228 TPSV-VPGLDPGTQT----------------SSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
SGA I + E V I G+ + LAQ LI + K +
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|26346528|dbj|BAC36915.1| unnamed protein product [Mus musculus]
Length = 403
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 146/360 (40%), Gaps = 87/360 (24%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G + ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSG-------------------------- 154
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
+A I RQ+ S AT Y PS ++ L
Sbjct: 155 -----VPDAIILCVRQICAVILGSPPKGAT-----IPYHPSLSLGTVLLSAN-------- 196
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIV--------------TQI-TQTMQIPISYAED 356
G S+ GQ A++ + L + SG V TQ +Q +P
Sbjct: 197 -QGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQTSSQEFLVPNDLIGC 255
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+IG G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|426340771|ref|XP_004034301.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|426340773|ref|XP_004034302.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Gorilla gorilla
gorilla]
gi|426340775|ref|XP_004034303.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Gorilla gorilla
gorilla]
Length = 403
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 146/345 (42%), Gaps = 57/345 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ +Y T E L++ +
Sbjct: 181 P-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTPTEVTKLQQLSSHAVPFA 227
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
+ + G DP T +Q +P +IG G+ I IR+
Sbjct: 228 TPSV-VPGLDPGTQT----------------SSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
SGA I + E V I G+ + LAQ LI + K +
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|255557235|ref|XP_002519648.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223541065|gb|EEF42621.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 462
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 150/341 (43%), Gaps = 37/341 (10%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP--------DRIVLISGKEE 132
R++VP + +IIG+ G IKK TRA IKV S P D ++
Sbjct: 145 RILVPSSQSANIIGKAGTTIKKLRSKTRATIKVTPKDASDPTHSCAMDFDNFIM-----S 199
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
P+ S A++A + + +++ ++ V S+RLLVP +IGK GS+I
Sbjct: 200 PDDLKSMAVEAILLLQGKINDEDDDTV----------SIRLLVPCKVIGCIIGKSGSIIN 249
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLP 252
I+ + A +R+ S + P + +VE+ GE V AL +V LR L
Sbjct: 250 EIRRRTKADIRI-SKGQKPKCADSSDELVEVLGEVGSVRDALVQIVLRLR-----DDALK 303
Query: 253 LFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTP---STRRESLFLEREPQLESR 309
+ ++N S+ + ++ S + + + TP R E+ +
Sbjct: 304 EKDGSHNPSVGAD---PLYSGGSGISVPSLLSSVPPVTPLAYDQRPETGSGLGLLSSSNL 360
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
Y +++ D ++ S + + G + T M +P + ++G GG +I NIR
Sbjct: 361 YGYGSLTM--GDNGYDSMSSYSSSKLYGGLPPPSTLEMLVPANAVGKVLGKGGANIANIR 418
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ SGA+I + +++ + I GT Q + A+ LIQ ++
Sbjct: 419 KISGAMIEISDAKSARGDRIAHISGTPEQKRAAENLIQAFI 459
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 79/144 (54%), Gaps = 18/144 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP-DRIVLI----SGKEEPE 134
+R++ P +GS+IG+ G++I ++TRA++KV+D P P DR++ I KE+ E
Sbjct: 41 YRILCPDEVIGSVIGKNGKVINSIRQETRAKVKVVD-PFPGPNDRVITIYCYVKKKEDVE 99
Query: 135 A--------PVSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLI 184
P A DA +RV +S + D D K C R+LVPS+Q+ N+I
Sbjct: 100 LDDEFHDHQPFCAAQDALLRVHSAISNAVSSVLDSDRKMKDKEEC--RILVPSSQSANII 157
Query: 185 GKQGSLIKSIQENSGASVRVLSAD 208
GK G+ IK ++ + A+++V D
Sbjct: 158 GKAGTTIKKLRSKTRATIKVTPKD 181
>gi|383862493|ref|XP_003706718.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Megachile
rotundata]
Length = 466
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 87/162 (53%), Gaps = 15/162 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G P +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG------PTNS 71
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF---CSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A + K+ D ++ G ++RL+VP++Q +LIGK GS IK I+E
Sbjct: 72 IFKAFTLICKKFEEWCSQFHDIQSGGGVPRPPITLRLIVPASQCGSLIGKGGSKIKEIRE 131
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+GAS++V S ER V + G + + + + +
Sbjct: 132 VTGASIQVASE----MLPNSTERAVTISGTSEAITQCIYHIC 169
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 325 STIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV---QES 381
S +R+S R P T M +P IIG GGT I IR+ SGA+I + +E
Sbjct: 255 SQLRTSNTNRQQ-PAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEER 313
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQI-DTGYRPSYPQLGNSSY 440
G + T+ I G V LAQ LI + K ++ + Q +G P G S+
Sbjct: 314 EGGATDRTITITGNPDAVALAQYLISMSVELQKANLEAQNTQTPGSGTTPG--ATGASAS 371
Query: 441 PSSSLST 447
PS++ +T
Sbjct: 372 PSNTTTT 378
>gi|30696273|ref|NP_200118.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|17065220|gb|AAL32764.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|30725478|gb|AAP37761.1| At5g53060 [Arabidopsis thaliana]
gi|332008915|gb|AED96298.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 652
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 162/341 (47%), Gaps = 31/341 (9%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ P K+ ++G +I + ++V D S ++I+ IS +E P+ P
Sbjct: 326 VFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFF 385
Query: 139 PAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PA +A + + ++ L P+ D + RLLVPS +I L GK GS + I
Sbjct: 386 PAQEALLHIQTQIIDLIPDKD--------NLITTRLLVPSRDSICLEGKAGS-VSEISRL 436
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK- 256
+G SV++L+ +E P + ++ ++++ GE +AL + LR + + L +K
Sbjct: 437 TGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMFKE----LSQKE 492
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE----PQLESRY-- 310
T AS S +E A + A++ + I + P++ +L L++ PQ + +
Sbjct: 493 TPPASTSTTGPLEGVAGVMEV-ASSNNTIQSREGPTS--SNLNLQQVSTILPQFKEGFGS 549
Query: 311 -RLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+G S + ++ ++T R + P+VT+ T + +P + ++ + I
Sbjct: 550 VAKAGESEHREEVPVTT------SRMAVPLVTRSTLEVVLPEAVVPKLVTKSRNKLAQIS 603
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
SGA +T+ E R + + I GT Q + AQ L+Q ++
Sbjct: 604 EWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQGFI 644
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 37/247 (14%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K P +R++ K G +IG+ G +IK + T A I V + +RI+ IS
Sbjct: 59 KSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEIS 118
Query: 129 G--KEEPEAPV---SPAMDAAVRVFKRV---------SGLP---ENDVDAKASGAAFCSV 171
+ +P+ + SPA +A V R+ G P E D G
Sbjct: 119 DNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVT 178
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSAD-EAPFYVTEDERIVEMQGEAAKV 230
RL+V L+GK G +I+ ++ + +R+L + P V+ E IV++ GE V
Sbjct: 179 RLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAV 238
Query: 231 LKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYT 290
AL V LR+ SQ R + +S + +A +Y
Sbjct: 239 KNALAIVSSRLRE-------------------SQHRDRSNFQGRSHSPERSFAAAGDDYM 279
Query: 291 PSTRRES 297
P RR+S
Sbjct: 280 PQLRRQS 286
>gi|195377361|ref|XP_002047459.1| GJ11921 [Drosophila virilis]
gi|194154617|gb|EDW69801.1| GJ11921 [Drosophila virilis]
Length = 589
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 12/155 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGT------TNA 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + K+ D G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 78 IFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 137
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S++V S ER V + G A ++ + +
Sbjct: 138 CSIQVAS----EMLPNSTERAVTLSGSAEQITQCI 168
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 323 ALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV---Q 379
AL+ + S L A+ Q M + IIG GGT I IR+ SGA+I + +
Sbjct: 246 ALAALAGSQLRTANANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCE 305
Query: 380 ESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQ 423
E G + T+ I G V LAQ LI + K ++ Q
Sbjct: 306 EREGGNTDRTITISGNPDSVALAQYLINMSVELQKANLQDQAAQ 349
>gi|386771595|ref|NP_001246876.1| mushroom-body expressed, isoform H [Drosophila melanogaster]
gi|383292067|gb|AFH04547.1| mushroom-body expressed, isoform H [Drosophila melanogaster]
Length = 433
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGT------TNA 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + K+ D G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 78 IFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 137
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
S++V S ER V + G A ++ + + +
Sbjct: 138 CSIQVASE----MLPNSTERAVTLSGSAEQITQCIYQIC 172
>gi|17737727|ref|NP_524208.1| mushroom-body expressed, isoform A [Drosophila melanogaster]
gi|1770212|emb|CAA67719.1| nucleic acid binding protein [Drosophila melanogaster]
gi|7296507|gb|AAF51792.1| mushroom-body expressed, isoform A [Drosophila melanogaster]
Length = 386
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 12/155 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGT------TNA 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + K+ D G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 78 IFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 137
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S++V S ER V + G A ++ + +
Sbjct: 138 CSIQVASE----MLPNSTERAVTLSGSAEQITQCI 168
>gi|189234912|ref|XP_969611.2| PREDICTED: similar to AGAP004942-PA [Tribolium castaneum]
Length = 446
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 20/159 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G
Sbjct: 19 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG---------- 66
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKSIQ 195
+ +A + F + E D + G+ ++RL+VP++Q +LIGK GS IK I+
Sbjct: 67 STNAIFKAFTLICKKFEEFQDINSGGSGVPRPPITLRLIVPASQCGSLIGKGGSKIKEIR 126
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
E +GAS++V S ER V + G + + +
Sbjct: 127 EVTGASIQVASE----MLPNSTERAVTISGTGEAITQCI 161
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES----RGLPDEITVEIKGTS 396
Q T M +P IIG GGT I IR+ SGA+I + G+ D T+ I G
Sbjct: 264 NQQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCDDRESGVTDR-TITISGNP 322
Query: 397 SQVQLAQQLIQ 407
V LAQ LI
Sbjct: 323 DAVALAQYLIN 333
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RL++ + ++IGK+G ++K +E SGA + + S P ERIV + G
Sbjct: 18 TIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINI-SDGSCP------ERIVTVTGSTNA 70
Query: 230 VLKALEAVVGHLRKF 244
+ KA + +F
Sbjct: 71 IFKAFTLICKKFEEF 85
>gi|14670369|ref|NP_127501.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|14670373|ref|NP_127503.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|291575148|ref|NP_001167571.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|114587184|ref|XP_001170982.1| PREDICTED: poly(rC)-binding protein 4 isoform 12 [Pan troglodytes]
gi|114587188|ref|XP_001171026.1| PREDICTED: poly(rC)-binding protein 4 isoform 14 [Pan troglodytes]
gi|410037040|ref|XP_003950173.1| PREDICTED: poly(rC)-binding protein 4 [Pan troglodytes]
gi|12230429|sp|P57723.1|PCBP4_HUMAN RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|9957167|gb|AAG09241.1|AF176330_1 alphaCP-4 [Homo sapiens]
gi|10436225|dbj|BAB14761.1| unnamed protein product [Homo sapiens]
gi|12804299|gb|AAH03008.1| Poly(rC) binding protein 4 [Homo sapiens]
gi|13278756|gb|AAH04153.1| Poly(rC) binding protein 4 [Homo sapiens]
gi|119585571|gb|EAW65167.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585572|gb|EAW65168.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585573|gb|EAW65169.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585576|gb|EAW65172.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585577|gb|EAW65173.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|261861404|dbj|BAI47224.1| poly(rC) binding protein 4 [synthetic construct]
gi|410227440|gb|JAA10939.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410227442|gb|JAA10940.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410227444|gb|JAA10941.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262892|gb|JAA19412.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262894|gb|JAA19413.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262896|gb|JAA19414.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410301312|gb|JAA29256.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410301314|gb|JAA29257.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350315|gb|JAA41761.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350319|gb|JAA41763.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350321|gb|JAA41764.1| poly(rC) binding protein 4 [Pan troglodytes]
Length = 403
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 146/345 (42%), Gaps = 57/345 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ +Y T E L++ +
Sbjct: 181 P-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFA 227
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
+ + G DP T +Q +P +IG G+ I IR+
Sbjct: 228 TPSV-VPGLDPGTQT----------------SSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
SGA I + E V I G+ + LAQ LI + K +
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|193083112|ref|NP_001122385.1| poly(rC)-binding protein 2 isoform f [Homo sapiens]
gi|66911068|gb|AAH97410.1| Pcbp2 protein [Rattus norvegicus]
gi|78395095|gb|AAI07689.1| PCBP2 protein [Homo sapiens]
gi|417399138|gb|JAA46599.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 335
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 158/362 (43%), Gaps = 63/362 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGVL 251
+E++GA V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVT 179
Query: 252 ----------PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE 301
P+ A Q + D + LH Q A+ + P T + F
Sbjct: 180 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMTHGNTGFSG 236
Query: 302 RE---PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
E P+++ + G D + T + + IP II
Sbjct: 237 IESSSPEVKGYW-------AGLDASAQT----------------TSHELTIPNDLIGCII 273
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESIT 418
G G I IR+ SGA I + + V I G+++ + LAQ LI +++ +
Sbjct: 274 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMG 333
Query: 419 SS 420
SS
Sbjct: 334 SS 335
>gi|442634098|ref|NP_001262198.1| mushroom-body expressed, isoform L [Drosophila melanogaster]
gi|440216175|gb|AGB94891.1| mushroom-body expressed, isoform L [Drosophila melanogaster]
Length = 368
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 12/155 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGT------TNA 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + K+ D G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 78 IFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 137
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S++V S ER V + G A ++ + +
Sbjct: 138 CSIQVASE----MLPNSTERAVTLSGSAEQITQCI 168
>gi|335299138|ref|XP_003358505.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Sus scrofa]
Length = 403
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 146/360 (40%), Gaps = 87/360 (24%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSG-------------------------- 154
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
+A I RQ+ +S AT Y PS ++ L
Sbjct: 155 -----VPDAIILCVRQICAVILESPPKGAT-----IPYHPSLSLGTVLLSTN-------- 196
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIV--------------TQI-TQTMQIPISYAED 356
G S+ GQ A++ + L + SG V TQ +Q +P
Sbjct: 197 -QGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVPGLDPGTQTSSQEFLVPNDLIGC 255
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+IG G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|395832731|ref|XP_003789409.1| PREDICTED: poly(rC)-binding protein 4 [Otolemur garnettii]
Length = 403
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 146/360 (40%), Gaps = 87/360 (24%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSG-------------------------- 154
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
+A I RQ+ +S AT Y PS ++ L
Sbjct: 155 -----VPDAIILCVRQICAVILESPPKGAT-----IPYHPSLSLGTVLLSAN-------- 196
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIV--------------TQI-TQTMQIPISYAED 356
G S+ GQ A++ + L + SG V TQ +Q +P
Sbjct: 197 -QGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPGTQTSSQEFLVPNDLIGC 255
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+IG G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|90652817|ref|NP_001035073.1| uncharacterized protein LOC664755 [Danio rerio]
gi|68533566|gb|AAH98540.1| Zgc:110045 [Danio rerio]
Length = 222
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + DG SSP+RIV I+G
Sbjct: 19 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISDG--SSPERIVTITG---------- 66
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + + F ++ E D+ A + S +RL+ P++Q +LIGK GS IK I
Sbjct: 67 ASEVIFKAFAMIAEKFEEDILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEI 126
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER V + G + + ++ +
Sbjct: 127 RESTGAQVQV-AGDLLP---DSTERAVTISGTPHAITQCVKHIC 166
>gi|45553235|ref|NP_996145.1| mushroom-body expressed, isoform C [Drosophila melanogaster]
gi|194876029|ref|XP_001973701.1| GG16232 [Drosophila erecta]
gi|195496648|ref|XP_002095782.1| GE22592 [Drosophila yakuba]
gi|16648354|gb|AAL25442.1| LD32520p [Drosophila melanogaster]
gi|45446078|gb|AAS65095.1| mushroom-body expressed, isoform C [Drosophila melanogaster]
gi|190655484|gb|EDV52727.1| GG16232 [Drosophila erecta]
gi|194181883|gb|EDW95494.1| GE22592 [Drosophila yakuba]
gi|220951950|gb|ACL88518.1| mub-PC [synthetic construct]
Length = 364
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 12/155 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++ + E++ A+I + DG S P+RIV +SG +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGT------TNA 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + K+ D G +RL+VP++Q +LIGK GS IK I++ +G
Sbjct: 78 IFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 137
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
S++V S ER V + G A ++ + +
Sbjct: 138 CSIQVASE----MLPNSTERAVTLSGSAEQITQCI 168
>gi|397495989|ref|XP_003818826.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Pan paniscus]
gi|397495991|ref|XP_003818827.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pan paniscus]
Length = 403
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 146/345 (42%), Gaps = 57/345 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ +Y T E L++ +
Sbjct: 181 P-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFA 227
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
+ + G DP T +Q +P +IG G+ I IR+
Sbjct: 228 TPSM-VPGLDPGTQT----------------SSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
SGA I + E V I G+ + LAQ LI + K +
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|14141168|ref|NP_005007.2| poly(rC)-binding protein 2 isoform a [Homo sapiens]
gi|47940610|gb|AAH71942.1| Poly(rC) binding protein 2 [Homo sapiens]
gi|119617115|gb|EAW96709.1| poly(rC) binding protein 2, isoform CRA_d [Homo sapiens]
Length = 366
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 170/368 (46%), Gaps = 44/368 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGV- 250
+E++GA V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVT 179
Query: 251 LPLFEKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER---- 302
+P K ++ + Q+R T +D +S T S E+ ++
Sbjct: 180 IPYRPKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAI 238
Query: 303 -EPQLESRYRL----SGISIYGQDPALSTIRSSA---LGRASGPIVTQITQT--MQIPIS 352
+P L ++L S + + S I SS+ G +G + T + + IP
Sbjct: 239 PQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPND 298
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
IIG G I IR+ SGA I + + V I G+++ + LAQ LI +++
Sbjct: 299 LIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSS 358
Query: 413 HKESITSS 420
+ SS
Sbjct: 359 ETGGMGSS 366
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|297821485|ref|XP_002878625.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297324464|gb|EFH54884.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 633
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 164/371 (44%), Gaps = 51/371 (13%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF++I + G IIG++G +I+ +T A I + S +R+V IS +E E+ S
Sbjct: 278 VFKIIFTSVVAGGIIGKQGTIIRALQNETGASISIGAPLKVSGERVVTISARENLESRYS 337
Query: 139 PAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLI--GKQGSLIKSIQ 195
A +A VF R V E + A +LLVPS A +L+ G + ++I
Sbjct: 338 HAQNALALVFARSVEIDVEKGLRPGLHNGAVVKTKLLVPSQFANSLVGNGNREAIIA--- 394
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE 255
+GA V + ++ +++E+E ++E++GE V KAL V LR+ L+ + VL
Sbjct: 395 --TGADVHIPVDNQILEWISENEVVIEIKGEYGHVQKALTHVSSKLRENLLPKKVLGEMR 452
Query: 256 -------------KTYNASISQE-----------------RQVETWADKSSLHAATQSAI 285
+ YN SQ+ + V + A+ L++ + +
Sbjct: 453 ARVSNPYESAGTSQIYNLKQSQQNSSRGDSLSVSDGEQNFKMVRSGAEVMKLNSVMHTEV 512
Query: 286 ---STEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQ 342
E T +SL + Q + ++S ++ +S++ R G V +
Sbjct: 513 LKEVDELKGFTLPQSLLEDDLTQEMKQLQMS------RNGDVSSLPQR---RGKGVYVRK 563
Query: 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
IT + + + G GT ++N+R+ SGA + V++ G+ + + I G Q + A
Sbjct: 564 ITLELTVEKDALGSLYGRDGTGVDNLRQISGAGVDVKDPTGIEATVLI-ISGNPEQTRTA 622
Query: 403 QQLIQEYMNNH 413
LI+ +++
Sbjct: 623 MSLIESILDDQ 633
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 107/261 (40%), Gaps = 38/261 (14%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI------- 127
P R++ +G IIG G ++ K +T +I + PV+ D V+
Sbjct: 22 PDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHC-ESPVNGSDHWVVFIVGSTAV 80
Query: 128 -------------SGKEEPE---APVSPAMDAAVRVFKRV-SGLPENDVDAKASGA---A 167
SG E + VS A A +RV +R L D G A
Sbjct: 81 NKSVLLTDRVGDFSGGEHEDWVTCDVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEA 140
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEA 227
+C + L Q ++G G ++ ++ +SGA +RVL P T + ++++ G+
Sbjct: 141 YCGI--LADRNQIGAVLGLGGKNVEWMRRSSGAMIRVLP---PPICGTNTDELIQITGDV 195
Query: 228 AKVLKALEAVVGHLRKFLVDQGV-LPLFEKTYNASI---SQERQVETWAD-KSSLHAATQ 282
V KAL V ++ G PL K Y +S S++ E + + +SS+ A+
Sbjct: 196 LAVKKALVMVSTCIQDNPPVNGYPQPLCIKAYESSTDGNSEDPHSEFFPNLRSSVPNASD 255
Query: 283 SAISTEYTPSTRRESLFLERE 303
SA S + P+ E ER+
Sbjct: 256 SASSNRHLPAVYDEGNGTERK 276
>gi|66472276|ref|NP_001018567.1| poly(rC) binding protein 3 [Danio rerio]
gi|63101380|gb|AAH95089.1| Poly(rC) binding protein 3 [Danio rerio]
gi|182890686|gb|AAI65090.1| Pcbp3 protein [Danio rerio]
Length = 241
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 18 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 67
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK +
Sbjct: 68 --DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEM 125
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER V + G +++ ++ +
Sbjct: 126 RESTGAQVQV-AGDMLP---NSTERAVTISGTPEAIIQCVKQIC 165
>gi|432931637|ref|XP_004081712.1| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Oryzias
latipes]
Length = 321
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 18 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 67
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
D + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK +
Sbjct: 68 --DTIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEM 125
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER V + G +++ ++ +
Sbjct: 126 RESTGAQVQV-AGDMLP---NSTERAVTISGTPEAIIQCVKQIC 165
>gi|126345445|ref|XP_001362564.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Monodelphis
domestica]
Length = 338
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 156/355 (43%), Gaps = 61/355 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRY 310
K ++ + Q+R T +D +S T S + P LE
Sbjct: 180 PKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPS----------------MCLNPDLEGP- 221
Query: 311 RLSGISIYGQ----DPALSTIRSSALGRASGPIVTQIT--------------QTMQIPIS 352
L +I GQ P L+ + A+ ++ P+ T + IP
Sbjct: 222 PLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPND 281
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
IIG G I IR+ SGA I + + V I G+++ + LAQ LI
Sbjct: 282 LIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 336
>gi|156388117|ref|XP_001634548.1| predicted protein [Nematostella vectensis]
gi|156221632|gb|EDO42485.1| predicted protein [Nematostella vectensis]
Length = 338
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 18/177 (10%)
Query: 70 KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG 129
K G + V +MI+ +GSIIG++G IK+ +++ A I + DG S+P+RIV ++G
Sbjct: 19 KGRGHSSNLVLKMIMQGKDIGSIIGKEGSTIKQFRQESNAHINISDG--STPERIVSVTG 76
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPENDV--DAKASGAAFCSVRLLVPSTQAINLIGKQ 187
+ DA V F + E+++ ++K++ ++RL+VP +Q ++IGK
Sbjct: 77 TK----------DAVVTAFALIGQKLEDELKSNSKSNTTPPVTLRLIVPGSQCGSIIGKG 126
Query: 188 GSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244
G+ IK I+E SGASV V F ER V + G + ++ + G + +F
Sbjct: 127 GAKIKEIREVSGASVVV----AGEFLPGSSERAVTLSGTPEALETCIDLLCGVMIEF 179
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
+ TM I IIG G+ I IR+ SGA I + +S D+ V I GT+ V LAQ
Sbjct: 248 SHTMTILKGAVGSIIGQKGSYITGIRQMSGASIKIGDSENGDDKREVLITGTAEAVGLAQ 307
Query: 404 QLIQEYMNNHKES 416
LI + +S
Sbjct: 308 FLINARLRQDGKS 320
>gi|8809595|dbj|BAA97146.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 660
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 164/345 (47%), Gaps = 31/345 (8%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ P K+ ++G +I + ++V D S ++I+ IS +E P+ P
Sbjct: 326 VFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFF 385
Query: 139 PAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PA +A + + ++ L P+ D + RLLVPS +I L GK GS + I
Sbjct: 386 PAQEALLHIQTQIIDLIPDKD--------NLITTRLLVPSRDSICLEGKAGS-VSEISRL 436
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK- 256
+G SV++L+ +E P + ++ ++++ GE +AL + LR + + L +K
Sbjct: 437 TGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMFKE----LSQKE 492
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE----PQLESRY-- 310
T AS S +E A + A++ + I + P++ +L L++ PQ + +
Sbjct: 493 TPPASTSTTGPLEGVAGVMEV-ASSNNTIQSREGPTS--SNLNLQQVSTILPQFKEGFGS 549
Query: 311 -RLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+G S + ++ ++T R + P+VT+ T + +P + ++ + I
Sbjct: 550 VAKAGESEHREEVPVTT------SRMAVPLVTRSTLEVVLPEAVVPKLVTKSRNKLAQIS 603
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
SGA +T+ E R + + I GT Q + AQ L+Q ++ + K
Sbjct: 604 EWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQGFILSSK 648
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 37/247 (14%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K P +R++ K G +IG+ G +IK + T A I V + +RI+ IS
Sbjct: 59 KSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEIS 118
Query: 129 G--KEEPEAPV---SPAMDAAVRVFKRV---------SGLP---ENDVDAKASGAAFCSV 171
+ +P+ + SPA +A V R+ G P E D G
Sbjct: 119 DNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVT 178
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSAD-EAPFYVTEDERIVEMQGEAAKV 230
RL+V L+GK G +I+ ++ + +R+L + P V+ E IV++ GE V
Sbjct: 179 RLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAV 238
Query: 231 LKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYT 290
AL V LR+ SQ R + +S + +A +Y
Sbjct: 239 KNALAIVSSRLRE-------------------SQHRDRSNFQGRSHSPERSFAAAGDDYM 279
Query: 291 PSTRRES 297
P RR+S
Sbjct: 280 PQLRRQS 286
>gi|296189557|ref|XP_002742821.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Callithrix
jacchus]
Length = 375
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 94/163 (57%), Gaps = 20/163 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ +++ ARIK+L+G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIRKESGARIKILEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDA---KASGAA-FCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
+A + F + E D+++ K++ A+ ++RL+VP+TQ +LIGK G IK I+
Sbjct: 66 --NAIFKAFAMIIYKLEEDINSSMTKSTAASRLVTLRLVVPATQCGSLIGKGGCKIKEIR 123
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+++GA V+V + D P ER + + G V K ++ +
Sbjct: 124 KSTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTKCVKQIC 162
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
TQIT + IP + IIG GT+I IR+ SGA I + V I G+++ +
Sbjct: 277 TQITHELTIPNNLIGCIIGRQGTNINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 336
Query: 401 LAQQLIQEYMNNHKESITS--SYGQIDTGY 428
LAQ LI+ +++ K S S G +D +
Sbjct: 337 LAQYLIKARLSSEKGMGCSWNSVGSLDNPF 366
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I++ SGA +++L + P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIRKESGARIKILEGN-CP------ERIITLTGPTNA 67
Query: 230 VLKALEAVV 238
+ KA ++
Sbjct: 68 IFKAFAMII 76
>gi|255562910|ref|XP_002522460.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538345|gb|EEF39952.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 559
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 20/185 (10%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-SGKEEPEAP- 136
V+R + P+ K+GSIIGR GE+ K+ ++++ I++ + +RIV I S EE
Sbjct: 51 VYRYLCPLRKIGSIIGRGGEIAKQLRSESKSNIRISEAMAGFEERIVTIYSNSEESNLFG 110
Query: 137 -----VSPAMDAAVRVFKRVSGLPENDVDAKA-------------SGAAFCSVRLLVPST 178
V PA DA V R+ N+ + S +VR+LVP+
Sbjct: 111 DSGEFVCPAQDALFMVHDRIIAEDLNNSNNNNEEEDDEEEEEFGESKEQVVTVRMLVPAD 170
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
Q +IGK G +I+SI+ +GA +R+L + P + ++ + GE A V KAL V
Sbjct: 171 QIGCVIGKGGQVIQSIRSETGAQIRILKDEHLPPLALSSDELLLIIGEPAVVRKALYQVA 230
Query: 239 GHLRK 243
L +
Sbjct: 231 TRLHE 235
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 7/151 (4%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+++RA IKV D I+ IS KE E S + AA+R+ R S E D S
Sbjct: 324 QESRASIKVDSSAAEGDDCIIFISAKEFFEDQ-SATLTAALRLQPRCSEKTERD-----S 377
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G + + RLLVP +Q L+GK G++I ++ + AS+R+L+ D P +ED+ +V++
Sbjct: 378 GDSVITTRLLVPRSQIGCLMGKGGAIISEMRNVTRASIRILAEDNLPKVASEDDEMVQIT 437
Query: 225 GEAAKVLKALEAVVGHLRKFLVDQ-GVLPLF 254
G AL VV L+ L + G L F
Sbjct: 438 GSHDVASNALLHVVLRLKANLFGRDGALTAF 468
>gi|12837891|dbj|BAB23990.1| unnamed protein product [Mus musculus]
Length = 403
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 147/339 (43%), Gaps = 57/339 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G + ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A ++ +Y T E L+ +
Sbjct: 181 P-----YHPSLSLGTVL--------LSANQGFSVQGQYGAVTPAEVTKLQ---------Q 218
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
LSG ++ P++ P +Q +P +IG G+ I IR+
Sbjct: 219 LSGHAVPFASPSVVP--------GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
SGA I + E V I G+ + LAQ LI +
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACL 309
>gi|118485588|gb|ABK94645.1| unknown [Populus trichocarpa]
Length = 294
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R++ P +G++IG+ G +I + +++ A IKV D ++ IS KE + SP
Sbjct: 33 LRVVCPTANIGAVIGKGGTIINQIRQESGATIKVDSSVAEGDDCLITISAKEIYDH-YSP 91
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
++AAVR+ R S E D SG + RLLVPS++ L+GK G++I +++ +
Sbjct: 92 TIEAAVRLQPRCSEKMERD-----SGLISFTTRLLVPSSRIGCLLGKGGAIIDEMRKLTK 146
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ-----GVLPLF 254
A +R+ + P ++D+ +V++ G+ AL + LR + D+ +LP+
Sbjct: 147 AIIRIPRKENLPKVASDDDEMVQIAGDLDVAKDALIQISRRLRANVFDREGAMSAILPVL 206
>gi|417410200|gb|JAA51577.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 378
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 170/368 (46%), Gaps = 44/368 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 28 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 78 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 135
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGV- 250
+E++GA V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 136 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVT 191
Query: 251 LPLFEKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER---- 302
+P K ++ + Q+R T +D +S T S E+ ++
Sbjct: 192 IPYRPKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAI 250
Query: 303 -EPQLESRYRL----SGISIYGQDPALSTIRSSA---LGRASGPIVTQITQT--MQIPIS 352
+P L ++L S + + S I SS+ G +G + T + + IP
Sbjct: 251 PQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPND 310
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
IIG G I IR+ SGA I + + V I G+++ + LAQ LI +++
Sbjct: 311 LIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSS 370
Query: 413 HKESITSS 420
+ SS
Sbjct: 371 ETGGMGSS 378
Score = 38.1 bits (87), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 27 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 79
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 80 IFKAFAMIIDKL 91
>gi|358252903|dbj|GAA50475.1| poly(rC)-binding protein 2/3/4 [Clonorchis sinensis]
Length = 859
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 91/181 (50%), Gaps = 34/181 (18%)
Query: 71 WPGWPGHCVFRMIVPVL----KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVL 126
P P F +IV +L +VGSIIG++GE +KK E++ ARI + DG SSP+RIV
Sbjct: 189 LPVHPNPQTFVLIVRLLMSGKEVGSIIGKRGENVKKYREESGARINISDG--SSPERIVT 246
Query: 127 ISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGK 186
I+G E +S A + F E+D LL +TQ ++IGK
Sbjct: 247 ITGTTE---QISVAFTLMSQKF-------EDDFTQG----------LLRMATQCGSIIGK 286
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
GS IK ++E +GAS++V A EA ER V + G A KA+ V HL V
Sbjct: 287 GGSRIKEVRELTGASIQV--ASEA--LPASTERTVTISGAA----KAISKCVRHLCDIFV 338
Query: 247 D 247
D
Sbjct: 339 D 339
>gi|218200638|gb|EEC83065.1| hypothetical protein OsI_28176 [Oryza sativa Indica Group]
gi|222640076|gb|EEE68208.1| hypothetical protein OsJ_26373 [Oryza sativa Japonica Group]
Length = 431
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 151/346 (43%), Gaps = 40/346 (11%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE 131
P G V R++ P K+G +IG+ G IK +++ ARI V D + I+ I+ E
Sbjct: 116 PKCSGELVLRVLCPAGKIGLVIGKGGVTIKSIRKESGARIDVDDSKNDREESIITITSNE 175
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ S A++A + + +++ +D + K G LIGK GS++
Sbjct: 176 ATDDAKSAAVEAVLLLQSKIN----DDNEGKVIGC----------------LIGKGGSIV 215
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
++ + A++ + S E P + + +VE+ GE + AL +V LR ++ V
Sbjct: 216 NDMRSKTKAAIYI-SKGEKPRKASSSDELVEVFGEVENLRDALVQIVLRLRDDVLRDSV- 273
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSA-----ISTEYTPSTRRESLFLEREPQL 306
+ S++ T A L+A++ + TP +ER ++
Sbjct: 274 -------DRQNSEKDGKLTVATTDPLYASSYPLPALLPYRQQITPLGYDHRGDIERGLEV 326
Query: 307 ESRYRLSGI-SIYGQDPALSTIRSSA-LGRASGPIVTQITQTMQIPISYAEDIIGVGGTS 364
L G S+ D S + S A G P ++T IP S ++G GT+
Sbjct: 327 YPHSSLYGYSSLQAIDDGYSAVSSYASKGYGGRPPHMEMT----IPASGLSKVMGKHGTN 382
Query: 365 IENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
++NI + SGA I + ES+ I GT+ Q Q A+ LI+ ++
Sbjct: 383 LDNIIKISGAHIEIIESKSSRHGHVARISGTTEQKQSAENLIKAFI 428
>gi|14141166|ref|NP_114366.1| poly(rC)-binding protein 2 isoform b [Homo sapiens]
gi|157041229|ref|NP_001096635.1| poly(rC)-binding protein 2 isoform 1 [Mus musculus]
gi|73996203|ref|XP_534789.2| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Canis lupus
familiaris]
gi|149714829|ref|XP_001504573.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Equus caballus]
gi|297692024|ref|XP_002823365.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Pongo abelii]
gi|301775803|ref|XP_002923308.1| PREDICTED: poly(rC)-binding protein 2-like [Ailuropoda melanoleuca]
gi|332206039|ref|XP_003252097.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Nomascus
leucogenys]
gi|332839234|ref|XP_003313706.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Pan troglodytes]
gi|395541533|ref|XP_003772697.1| PREDICTED: poly(rC)-binding protein 2 [Sarcophilus harrisii]
gi|403296804|ref|XP_003939285.1| PREDICTED: poly(rC)-binding protein 2 [Saimiri boliviensis
boliviensis]
gi|410964553|ref|XP_003988818.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Felis catus]
gi|426224368|ref|XP_004006343.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Ovis aries]
gi|426372753|ref|XP_004053282.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Gorilla gorilla
gorilla]
gi|2500577|sp|Q61990.1|PCBP2_MOUSE RecName: Full=Poly(rC)-binding protein 2; AltName: Full=Alpha-CP2;
AltName: Full=CTBP; Short=CBP; AltName: Full=Putative
heterogeneous nuclear ribonucleoprotein X; Short=hnRNP X
gi|436894|gb|AAA03705.1| nucleic acid binding protein [Mus musculus]
gi|12654635|gb|AAH01155.1| Poly(rC) binding protein 2 [Homo sapiens]
gi|13172240|gb|AAK14059.1| alpha-CP2 [Mus musculus]
gi|50925529|gb|AAH78909.1| Pcbp2 protein [Rattus norvegicus]
gi|119617113|gb|EAW96707.1| poly(rC) binding protein 2, isoform CRA_b [Homo sapiens]
gi|148672029|gb|EDL03976.1| poly(rC) binding protein 2, isoform CRA_c [Mus musculus]
gi|149031920|gb|EDL86832.1| rCG50739, isoform CRA_a [Rattus norvegicus]
gi|158257714|dbj|BAF84830.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 166/364 (45%), Gaps = 40/364 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER-----EPQ 305
K ++ + Q+R T +D +S T S E+ ++ +P
Sbjct: 180 PKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 238
Query: 306 LESRYRL----SGISIYGQDPALSTIRSSA---LGRASGPIVTQITQT--MQIPISYAED 356
L ++L S + + S I SS+ G +G + T + + IP
Sbjct: 239 LTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGC 298
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
IIG G I IR+ SGA I + + V I G+++ + LAQ LI +++
Sbjct: 299 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGG 358
Query: 417 ITSS 420
+ SS
Sbjct: 359 MGSS 362
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|148226696|ref|NP_001080123.1| poly(rC) binding protein 3 [Xenopus laevis]
gi|27370875|gb|AAH41241.1| Pcbp2b protein [Xenopus laevis]
Length = 353
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 164/366 (44%), Gaps = 53/366 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ ++ AS ++RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI-----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESR 309
K ++ + RQ A ++ L +S +T +++ L ++ +
Sbjct: 180 PKPSSSPVIFAGGQVSRQAGGHACETDLWEGRRS-----HTGGVSLDAVDLHGAYTIQGQ 234
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPI---------------VTQITQTMQIPISYA 354
Y + P L+ + A+ ++ P+ + + IP
Sbjct: 235 YAIP-------QPDLTKLHQLAMQQSHFPMSHSGNTGFSGGIDASAQATSHELTIPNDLI 287
Query: 355 EDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
IIG G I IR+ SGA I + ++ V I G+++ + LAQ LI +++
Sbjct: 288 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTASISLAQYLINVRLSSEA 347
Query: 415 ESITSS 420
+ SS
Sbjct: 348 GGMGSS 353
>gi|147903491|ref|NP_001091320.1| poly(rC) binding protein 1 [Xenopus laevis]
gi|124481736|gb|AAI33216.1| LOC100037147 protein [Xenopus laevis]
Length = 221
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK I
Sbjct: 64 PTDAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++G+ V+V + D P ER V + G +++ ++ +
Sbjct: 124 RESTGSQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQIC 163
>gi|53749712|ref|NP_001005451.1| poly(rC) binding protein 3 [Xenopus (Silurana) tropicalis]
gi|49250542|gb|AAH74565.1| poly(rC) binding protein 2 [Xenopus (Silurana) tropicalis]
gi|89266917|emb|CAJ82240.1| novel protein similar to poly(rC) binding protein 2 [Xenopus
(Silurana) tropicalis]
Length = 353
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 164/366 (44%), Gaps = 53/366 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ ++ AS ++RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI-----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESR 309
K ++ + RQ A ++ L +S +T +++ L ++ +
Sbjct: 180 PKPSSSPVIFAGGQVSRQAGGHACETDLWEGRRS-----HTGGVSLDAVDLHGAYTIQGQ 234
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPI---------------VTQITQTMQIPISYA 354
Y + P L+ + A+ ++ P+ + + IP
Sbjct: 235 YAIP-------QPDLTKLHQLAMQQSHFPMSHSGNTGFSGGIDASAQTTSHELTIPNDLI 287
Query: 355 EDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
IIG G I IR+ SGA I + ++ V I G+++ + LAQ LI +++
Sbjct: 288 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTASISLAQYLINVRLSSEA 347
Query: 415 ESITSS 420
+ SS
Sbjct: 348 GGMGSS 353
>gi|410920039|ref|XP_003973491.1| PREDICTED: poly(rC)-binding protein 2-like [Takifugu rubripes]
Length = 327
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 42/347 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTT- 66
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + F + E D+ + + + S +R++VP++Q +LIGK G IK I
Sbjct: 67 ---AIFKAFSMIIDKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G A +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGTAHSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + +A + Q AI P + ++ PQL ++L+
Sbjct: 180 PKPSGSPV-------IFAGGQAYAVQGQHAIP---QPDSSSAAI----SPQLSKLHQLA- 224
Query: 315 ISIYGQDP-ALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
Q P ++T G + + M IP IIG G I IR+ SG
Sbjct: 225 ---MQQGPFPMATCNQGFTGMDAS--AQACSHEMTIPNDLIGCIIGRQGAKISEIRQMSG 279
Query: 374 AIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
A I + + V I G+ + + LA+ LI+ +++ + S+
Sbjct: 280 AQIKIANPVDGSTDRQVTITGSPASIGLAEYLIKARLSSEATGLASN 326
>gi|291393785|ref|XP_002713277.1| PREDICTED: poly(rC) binding protein 4 [Oryctolagus cuniculus]
Length = 403
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 160/384 (41%), Gaps = 63/384 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K I+E +GA V+V + D P ER V + G ++ + + + + +
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
P Y+ S+S + L A + +Y T E L+ +
Sbjct: 181 P-----YHPSLSLGTVL--------LSANQGFPVQGQYGAVTPAEVTKLQ---------Q 218
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
LSG ++ P++ P +Q +P +IG G+ I IR+
Sbjct: 219 LSGHAVPFASPSVVP--------GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPS 431
SGA I + E V I G+ + LAQ LI + K + + G
Sbjct: 271 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSTPADLSAP 330
Query: 432 YPQLGNSSYPSSSLSTQPYGGYGS 455
+ S P ++L T P G G+
Sbjct: 331 F------SPPLTALPTAPPGLLGT 348
>gi|354490191|ref|XP_003507243.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Cricetulus
griseus]
gi|344239259|gb|EGV95362.1| Poly(rC)-binding protein 2 [Cricetulus griseus]
Length = 362
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 167/365 (45%), Gaps = 42/365 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER-----EPQ 305
K ++ + Q+R T +D +S T S E+ ++ +P
Sbjct: 180 PKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 238
Query: 306 LESRYRL----SGISIYGQDPALSTIRSSA---LGRASGPIVTQITQT--MQIPISYAED 356
L ++L S + + S I SS+ G +G + T + + IP
Sbjct: 239 LTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGC 298
Query: 357 IIGVGGTSIENIRRTSGA-IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
IIG G I IR+ SGA I T G D V I G+++ + LAQ LI +++
Sbjct: 299 IIGRQGAKINEIRQMSGAQIKTANPVEGSTDR-QVTITGSAASISLAQYLINVRLSSETG 357
Query: 416 SITSS 420
+ SS
Sbjct: 358 GMGSS 362
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|61557337|ref|NP_001013241.1| poly(rC)-binding protein 2 [Rattus norvegicus]
gi|193083108|ref|NP_001122383.1| poly(rC)-binding protein 2 isoform d [Homo sapiens]
gi|6707736|sp|Q15366.1|PCBP2_HUMAN RecName: Full=Poly(rC)-binding protein 2; AltName: Full=Alpha-CP2;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E2; Short=hnRNP E2
gi|460773|emb|CAA55015.1| hnRNP-E2 [Homo sapiens]
gi|50926841|gb|AAH78906.1| Poly(rC) binding protein 2 [Rattus norvegicus]
gi|119617116|gb|EAW96710.1| poly(rC) binding protein 2, isoform CRA_e [Homo sapiens]
Length = 365
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 167/367 (45%), Gaps = 43/367 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGV- 250
+E++GA V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVT 179
Query: 251 LPLFEKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER---- 302
+P K ++ + Q+R T +D +S T S E+ ++
Sbjct: 180 IPYRPKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAI 238
Query: 303 -EPQLESRYRL----SGISIYGQDPALSTIRSSA---LGRASGPIVTQIT-QTMQIPISY 353
+P L ++L S + + S I SS+ G Q T + IP
Sbjct: 239 PQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDL 298
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413
IIG G I IR+ SGA I + + V I G+++ + LAQ LI +++
Sbjct: 299 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 358
Query: 414 KESITSS 420
+ SS
Sbjct: 359 TGGMGSS 365
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|387017714|gb|AFJ50975.1| Poly(rC)-binding protein 2-like [Crotalus adamanteus]
Length = 347
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 163/364 (44%), Gaps = 55/364 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ ++ AS ++RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRY 310
K ++ + Q+R + S H A ++++ LE PQ Y
Sbjct: 180 PKPSSSPVIFAGGQDRY--SSGSASYPHTAPSMCLNSD-----------LEGPPQ--EAY 224
Query: 311 RLSGISIYGQDPALSTIRSSALGRASGPI--------------VTQITQTMQIPISYAED 356
+ G Q P L+ + A+ ++ P+ + + IP
Sbjct: 225 TIQGQYAIPQ-PDLTKLHQLAMQQSHFPMSHGNTGFSAGLDASAQTTSHELTIPNDLIGC 283
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
IIG G I IR+ SGA I + + V I G+++ + LAQ LI +++
Sbjct: 284 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGG 343
Query: 417 ITSS 420
+ SS
Sbjct: 344 MGSS 347
>gi|147901405|ref|NP_001084264.1| poly(rC) binding protein 2 [Xenopus laevis]
gi|5459450|emb|CAB50743.1| hnRNP-E2 protein [Xenopus laevis]
Length = 353
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 164/366 (44%), Gaps = 53/366 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ ++ AS ++RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI-----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESR 309
K ++ + RQ A ++ L +S +T +++ L ++ +
Sbjct: 180 PKPSSSPVIFAGGQVSRQAGGHACETDLWEGRRS-----HTGGVSLDAVDLHGAYTIQGQ 234
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPI---------------VTQITQTMQIPISYA 354
Y + P L+ + A+ ++ P+ + + IP
Sbjct: 235 YAIP-------QPDLTKLHQLAMQQSHFPMSHSGNTGFSGGIDASAQTTSHELTIPNDLI 287
Query: 355 EDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
IIG G I IR+ SGA I + ++ V I G+++ + LAQ LI +++
Sbjct: 288 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTASISLAQYLINVRLSSEA 347
Query: 415 ESITSS 420
+ SS
Sbjct: 348 GGMGSS 353
>gi|30681758|ref|NP_850026.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|330252232|gb|AEC07326.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 632
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 107/432 (24%), Positives = 178/432 (41%), Gaps = 75/432 (17%)
Query: 24 ATTESPTTESEAPPTIGSENTEHTTE---SDSALPQSTGPDAAAVPEEKKWPGWPGHCVF 80
+E P SE P + S + + TE S+ LP G E+K VF
Sbjct: 234 GNSEDP--HSEFFPNLRSSSLSNATEIVASNRHLPYDGGNST-----ERK-------VVF 279
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
++I + G IIG++G +I+ +T A I V S +R+V +S +E E+ S A
Sbjct: 280 KIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRYSHA 339
Query: 141 MDAAVRVFKRVSGLP-ENDVDAKASGAAFCSVRLLVPS--TQAINLIGKQGSLIKSIQEN 197
+A VF R + E + A +LLVPS + N G + ++I
Sbjct: 340 QNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNGNREAIIA----- 394
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE-- 255
+GA V + ++ +++E+E ++E++GE + V KAL V LR+ L+ + VL
Sbjct: 395 TGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVLGEMRAR 454
Query: 256 ------------KTYNASISQERQVETWADKSSLHAA---------------TQSAISTE 288
+ YN SQ Q + D S+ AA + S + TE
Sbjct: 455 VSNPYESAGGRSQIYNLQPSQ--QDASRGDSLSVSAAVPDLKMVRSGAEVLKSNSVMHTE 512
Query: 289 YTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALG-------RASGPIVT 341
+ F + LE + ++ S+ G R+ G V
Sbjct: 513 VLKEVDELNDFTLPQSLLEEDL----------TQGMKQLQMSSNGDVSSLPPRSKGVSVR 562
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQL 401
+IT + + + G GT ++N+++ SGA + V++ G E TV I G Q +
Sbjct: 563 KITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPTG--TEATVLISGNPEQART 620
Query: 402 AQQLIQEYMNNH 413
A LI+ + +
Sbjct: 621 AMSLIESILTDQ 632
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 106/264 (40%), Gaps = 45/264 (17%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI------- 127
P R++ +G IIG G ++ K +T +I + PV+ D V+
Sbjct: 22 PDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHC-ESPVNGSDHWVVFIVGSTAV 80
Query: 128 -------------SGKEEPE---APVSPAMDAAVRVFKRV-SGLPENDVDAKASGA---A 167
SG E + VS A A +RV +R L D G A
Sbjct: 81 NQSILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEA 140
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEA 227
+C + L Q ++G G ++ ++ NSGA +RVL P T+++ ++++ G+
Sbjct: 141 YCGI--LADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLP---PPICGTKNDELIQITGDV 195
Query: 228 AKVLKALEAVVGHLRKFLVDQGVLP-----LFEKTYNASISQERQVETWAD--KSSLHAA 280
V KAL V +++ G P +E S++ E + + SSL A
Sbjct: 196 LAVKKALVMVSSYIQNNAPLNGYPPPLSIKGYESLSTDGNSEDPHSEFFPNLRSSSLSNA 255
Query: 281 TQSAISTEYTP-----STRRESLF 299
T+ S + P ST R+ +F
Sbjct: 256 TEIVASNRHLPYDGGNSTERKVVF 279
>gi|449492545|ref|XP_004159029.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 716
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 19/218 (8%)
Query: 42 ENTEHTTESDSALP--QSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
N ++ + S S++P ++ G A EE VFR++ KVGS+IG+ G +
Sbjct: 314 HNADYRSRSYSSIPGHENAGAGPRAAMEED--------VVFRLLCQPDKVGSLIGKGGTV 365
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
++ +T A IK++D P +R+V+IS +E E SPA +A +R R++ +
Sbjct: 366 VRALQNETGASIKIVDTP-DLDERLVVISARETLEQTYSPAQEAVIRAHCRIAEI----- 419
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDER 219
GAA + RLLV Q L+G+ G +I ++ +G S+++ D+ +
Sbjct: 420 -GYEPGAAVVA-RLLVHGQQIGYLVGRGGHIINDMRRGTGTSIQIFPRDQIQNGGPMSDE 477
Query: 220 IVEMQGEAAKVLKALEAVVGHLRK-FLVDQGVLPLFEK 256
+V++ G V AL + +R F + +P F
Sbjct: 478 VVQVIGNLPSVQDALFHITNRIRDTFFPMRPHVPNFNN 515
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 56/214 (26%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE 131
P P +FR++ P KV SI+ + + ARI V D P+ S + VL+
Sbjct: 62 PSSPSDTLFRLLCPASKVSSIL-------RHLRDIPGARIHV-DEPLPSCEECVLVILAG 113
Query: 132 EPEAPV-------------------------------SPAMDAAVRVFKRVSGLPE---- 156
P P S A A +R F+ + + E
Sbjct: 114 SPSKPTHTNPGNDREFREHDVHRNVSSDTVAGDSDERSQAQQALLRTFESIVRMNEDSGE 173
Query: 157 -------------NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
ND + RLL PS Q ++G+ G ++ I++ S A V+
Sbjct: 174 NQEIQKKNADSAPNDRISGGETDGLVVCRLLAPSHQVGRVLGRGGKTVEKIRQESMAHVK 233
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+ D+ P + + ++++ G + V+KAL +V
Sbjct: 234 IFPKDQNPACASPQDELIQISGNFSAVMKALSSV 267
>gi|405977635|gb|EKC42074.1| Poly(rC)-binding protein 3 [Crassostrea gigas]
Length = 439
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 17/160 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RMI+ +VGSIIG+KG+ IKK ED+ A+I + DG S P+RIV ++G E
Sbjct: 14 VRMIMQGKEVGSIIGKKGDNIKKFREDSGAKINISDG--SCPERIVTVTGTTE------- 64
Query: 140 AMDAAVRVFKRVSGLPENDV-DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
+ F + E D+ + ++RL+VP++Q +LIGK GS IK I+E +
Sbjct: 65 ---CIHKAFTMICKKFEEDLQNTPTVPKPPVTLRLVVPASQCGSLIGKGGSKIKEIRETT 121
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
GAS++V S ER V + G A + ++ +
Sbjct: 122 GASIQVASE----MLPNSTERAVTVSGTADAITLCIQNIC 157
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405
M IP IIG GG I IR+ SGA+I + + G PD V I GT + LAQ L
Sbjct: 274 MAIPNDLIGCIIGRGGQKINEIRQMSGAMIKISNAEEGAPDR-KVTITGTPETIGLAQYL 332
Query: 406 IQEYMNNHK 414
I M HK
Sbjct: 333 INTSMELHK 341
>gi|357117002|ref|XP_003560265.1| PREDICTED: uncharacterized protein LOC100827626 [Brachypodium
distachyon]
Length = 656
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
FR++ V G +IG+KG +IK +T A I V + +R++ IS E P S
Sbjct: 283 FRLLCHVNLAGGLIGKKGMIIKGFETETGASIDVGNPFSGCMERVITISALESP-GKHSK 341
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + +F R+ + N + K CS R+LVP +Q +L+G G++IK + +++G
Sbjct: 342 VQSAILCIFDRMEEVERNLMFGKPE----CSARVLVPKSQFSSLVGLGGAIIKEMVKSTG 397
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
A + +L + P + ER++++ G V AL V LR
Sbjct: 398 ARIEILDEMDVPACASNCERVLQITGNLVNVRDALFVVSEKLRN 441
>gi|148672030|gb|EDL03977.1| poly(rC) binding protein 2, isoform CRA_d [Mus musculus]
Length = 316
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 153/349 (43%), Gaps = 56/349 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIP-- 177
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE---PQLESRYR 311
Y S + + LH Q A+ + P T + F E P+++
Sbjct: 178 ---YRPKPSSSPVIFAGGQLTKLH---QLAMQQSHFPMTHGNTGFSGIESSSPEVKGY-- 229
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
+G D + T + + IP IIG G I IR+
Sbjct: 230 ------WGLDASAQT----------------TSHELTIPNDLIGCIIGRQGAKINEIRQM 267
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
SGA I + + V I G+++ + LAQ LI +++ + SS
Sbjct: 268 SGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 316
>gi|149031922|gb|EDL86834.1| rCG50739, isoform CRA_c [Rattus norvegicus]
Length = 317
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 153/349 (43%), Gaps = 55/349 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIP-- 177
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE---PQLESRYR 311
Y S + + LH Q A+ + P T + F E P+++ +
Sbjct: 178 ---YRPKPSSSPVIFAGGQLTKLH---QLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW- 230
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
G D + T + + IP IIG G I IR+
Sbjct: 231 ------AGLDASAQT----------------TSHELTIPNDLIGCIIGRQGAKINEIRQM 268
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
SGA I + + V I G+++ + LAQ LI +++ + SS
Sbjct: 269 SGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 317
>gi|449448150|ref|XP_004141829.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 716
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 19/218 (8%)
Query: 42 ENTEHTTESDSALP--QSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
N ++ + S S++P ++ G A EE VFR++ KVGS+IG+ G +
Sbjct: 314 HNADYRSRSYSSIPGHENAGAGPRAAMEED--------VVFRLLCQPDKVGSLIGKGGTV 365
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
++ +T A IK++D P +R+V+IS +E E SPA +A +R R++ +
Sbjct: 366 VRALQNETGASIKIVDTP-DLDERLVVISARETLEQTYSPAQEAVIRAHCRIAEI----- 419
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDER 219
GAA + RLLV Q L+G+ G +I ++ +G S+++ D+ +
Sbjct: 420 -GYEPGAAVVA-RLLVHGQQIGYLVGRGGHIINDMRRGTGTSIQIFPRDQIQNGGPMSDE 477
Query: 220 IVEMQGEAAKVLKALEAVVGHLRK-FLVDQGVLPLFEK 256
+V++ G V AL + +R F + +P F
Sbjct: 478 VVQVIGNLPSVQDALFHITNRIRDTFFPMRPHVPNFNN 515
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 56/214 (26%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE 131
P P +FR++ P KV SI+ + + ARI V D P+ S + VL+
Sbjct: 62 PSSPSDTLFRLLCPASKVSSIL-------RHLRDIPGARIHV-DEPLPSCEECVLVILAG 113
Query: 132 EPEAPV-------------------------------SPAMDAAVRVFKRVSGLPE---- 156
P P S A A +R F+ + + E
Sbjct: 114 SPSKPAHTNPGNDREFREHDVHRNVSSDTVAGDSDERSQAQQALLRTFESIVRMNEDSGE 173
Query: 157 -------------NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
ND + RLL PS Q ++G+ G ++ I++ S A V+
Sbjct: 174 NQEIQKKNADSAPNDRISGGETDGLVVCRLLAPSHQVGRVLGRGGKTVEKIRQESMAHVK 233
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+ D+ P + + ++++ G + V+KAL +V
Sbjct: 234 IFPKDQNPACASPQDELIQISGNFSAVMKALSSV 267
>gi|126345443|ref|XP_001362482.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Monodelphis
domestica]
gi|351706147|gb|EHB09066.1| Poly(rC)-binding protein 2 [Heterocephalus glaber]
gi|440900676|gb|ELR51755.1| Poly(rC)-binding protein 2, partial [Bos grunniens mutus]
Length = 351
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 160/351 (45%), Gaps = 40/351 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER-----EPQ 305
K ++ + Q+R T +D +S T S E+ ++ +P
Sbjct: 180 PKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 238
Query: 306 LESRYRL----SGISIYGQDPALSTIRSSA---LGRASGPIVTQITQT--MQIPISYAED 356
L ++L S + + S I SS+ G +G + T + + IP
Sbjct: 239 LTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGC 298
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
IIG G I IR+ SGA I + + V I G+++ + LAQ LI
Sbjct: 299 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 349
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|193083110|ref|NP_001122384.1| poly(rC)-binding protein 2 isoform e [Homo sapiens]
gi|291389255|ref|XP_002711064.1| PREDICTED: poly(rC) binding protein 2-like isoform 1 [Oryctolagus
cuniculus]
gi|348581079|ref|XP_003476305.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Cavia porcellus]
gi|184186908|gb|ACC69194.1| poly(rC) binding protein 2 [Mus musculus]
gi|208967068|dbj|BAG73548.1| poly(rC) binding protein 2 [synthetic construct]
Length = 361
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 39/363 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER-----EPQ 305
K ++ + Q+R T +D +S T S E+ ++ +P
Sbjct: 180 PKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 238
Query: 306 LESRYRL----SGISIYGQDPALSTIRSSA---LGRASGPIVTQIT-QTMQIPISYAEDI 357
L ++L S + + S I SS+ G Q T + IP I
Sbjct: 239 LTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCI 298
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
IG G I IR+ SGA I + + V I G+++ + LAQ LI +++ +
Sbjct: 299 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGM 358
Query: 418 TSS 420
SS
Sbjct: 359 GSS 361
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|4314357|gb|AAD15568.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 649
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 110/438 (25%), Positives = 182/438 (41%), Gaps = 70/438 (15%)
Query: 24 ATTESPTTESEAPPTIGSENTEHTTE---SDSALPQSTGPDAAAVPEEKKWPGWPGHCVF 80
+E P SE P + S + + TE S+ LP G E+K VF
Sbjct: 234 GNSEDP--HSEFFPNLRSSSLSNATEIVASNRHLPYDGGNST-----ERK-------VVF 279
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
++I + G IIG++G +I+ +T A I V S +R+V +S +E E+ S A
Sbjct: 280 KIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRYSHA 339
Query: 141 MDAAVRVFKRVSGLP-ENDVDAKASGAAFCSVRLLVPS--TQAINLIGKQGSLIKSIQEN 197
+A VF R + E + A +LLVPS + N G + ++I
Sbjct: 340 QNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNGNREAIIA----- 394
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE-- 255
+GA V + ++ +++E+E ++E++GE + V KAL V LR+ L+ + VL
Sbjct: 395 TGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVLGEMRAR 454
Query: 256 ------------KTYNASISQE------RQVETWADKSSLHAA---------------TQ 282
+ YN SQ+ Q + D S+ AA +
Sbjct: 455 VSNPYESAGGRSQIYNLQPSQQPSNSIKPQDASRGDSLSVSAAVPDLKMVRSGAEVLKSN 514
Query: 283 SAIST-------EYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRA 335
S + T E T +SL E Q + ++S P S + + R+
Sbjct: 515 SVMHTEVLKEVDELNDFTLPQSLLEEDLTQGMKQLQMSSNGDVSSLPPRSVL-AKQQRRS 573
Query: 336 SGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGT 395
G V +IT + + + G GT ++N+++ SGA + V++ G E TV I G
Sbjct: 574 KGVSVRKITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPTG--TEATVLISGN 631
Query: 396 SSQVQLAQQLIQEYMNNH 413
Q + A LI+ + +
Sbjct: 632 PEQARTAMSLIESILTDQ 649
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 106/264 (40%), Gaps = 45/264 (17%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI------- 127
P R++ +G IIG G ++ K +T +I + PV+ D V+
Sbjct: 22 PDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHC-ESPVNGSDHWVVFIVGSTAV 80
Query: 128 -------------SGKEEPE---APVSPAMDAAVRVFKRV-SGLPENDVDAKASGA---A 167
SG E + VS A A +RV +R L D G A
Sbjct: 81 NQSILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEA 140
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEA 227
+C + L Q ++G G ++ ++ NSGA +RVL P T+++ ++++ G+
Sbjct: 141 YCGI--LADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLP---PPICGTKNDELIQITGDV 195
Query: 228 AKVLKALEAVVGHLRKFLVDQGVLP-----LFEKTYNASISQERQVETWAD--KSSLHAA 280
V KAL V +++ G P +E S++ E + + SSL A
Sbjct: 196 LAVKKALVMVSSYIQNNAPLNGYPPPLSIKGYESLSTDGNSEDPHSEFFPNLRSSSLSNA 255
Query: 281 TQSAISTEYTP-----STRRESLF 299
T+ S + P ST R+ +F
Sbjct: 256 TEIVASNRHLPYDGGNSTERKVVF 279
>gi|54037961|gb|AAH84195.1| Pcbp2 protein [Xenopus laevis]
Length = 353
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 166/366 (45%), Gaps = 53/366 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ ++ AS ++RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASI-----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESR 309
K ++ + RQ A ++ L +S +T +++ L ++ +
Sbjct: 180 PKPSSSPVIFAGGQVSRQAGGHACETDLWEGRRS-----HTGGVSLDAVDLHGAYIIQGQ 234
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPI-----------VTQITQT----MQIPISYA 354
Y + P L+ + A+ ++ P+ + QT + IP
Sbjct: 235 YAIP-------QPDLTKLHQLAMQQSHFPMSHSGNTGFSGGIDASAQTTSHELTIPNDLI 287
Query: 355 EDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
IIG G I IR+ SGA I + ++ V I G+++ + LAQ LI +++
Sbjct: 288 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTASISLAQYLINVRLSSEA 347
Query: 415 ESITSS 420
+ SS
Sbjct: 348 GGMGSS 353
>gi|270001418|gb|EEZ97865.1| hypothetical protein TcasGA2_TC000237 [Tribolium castaneum]
Length = 415
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 24/167 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G
Sbjct: 17 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG---------- 64
Query: 140 AMDAAVRVFKRVSGLPE------NDVDAKASGAAF--CSVRLLVPSTQAINLIGKQGSLI 191
+ +A + F + E D+++ SG ++RL+VP++Q +LIGK GS I
Sbjct: 65 STNAIFKAFTLICKKFEEWCSQFQDINSGGSGVPRPPITLRLIVPASQCGSLIGKGGSKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
K I+E +GAS++V S ER V + G + + + +
Sbjct: 125 KEIREVTGASIQVASE----MLPNSTERAVTISGTGEAITQCIYHIC 167
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES----RGLPDEITVEIKGTS 396
Q T M +P IIG GGT I IR+ SGA+I + G+ D T+ I G
Sbjct: 317 NQQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCDDRESGVTDR-TITISGNP 375
Query: 397 SQVQLAQQLIQ 407
V LAQ LI
Sbjct: 376 DAVALAQYLIN 386
>gi|297262518|ref|XP_001105618.2| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Macaca mulatta]
Length = 335
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 158/357 (44%), Gaps = 53/357 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFK 70
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + + V + ++ A+ ++RL+VP++Q +LIGK G IK I+E++G
Sbjct: 71 AFAMIIDKLEEV--FSSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGVL----- 251
A V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 129 AQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRP 184
Query: 252 -----PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE--- 303
P+ A Q + D + LH Q A+ + P T + F E
Sbjct: 185 KPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMTHGNTGFSGIESSS 241
Query: 304 PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGT 363
P+++ + G D + T + + IP IIG G
Sbjct: 242 PEVKGYW-------AGLDASAQT----------------TSHELTIPNDLIGCIIGRQGA 278
Query: 364 SIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
I IR+ SGA I + + V I G+++ + LAQ LI +++ + SS
Sbjct: 279 KINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 335
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHLRKFL 245
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEEVF 83
>gi|33150676|gb|AAP97216.1|AF092441_1 CBP [Homo sapiens]
Length = 397
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 152/344 (44%), Gaps = 55/344 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S +RI I+G +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SFLERITTITGS-------TA 70
Query: 140 AMDAAVRV--FKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKS 193
A+ AV + FK L E+ A A+G ++RL++P++Q +LIG+ G+ IK
Sbjct: 71 AVFHAVSMIAFK----LDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGQAGTKIKE 126
Query: 194 IQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPL 253
I+E +GA V+V + D + ER V + G ++ + + + + +P
Sbjct: 127 IRETTGAQVQV-AGD---LFPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIP- 181
Query: 254 FEKTYNASISQERQVETWADKSSLHAATQS-AISTEYTPSTRRESLFLEREPQLESRYRL 312
Y+ S+S + L +A Q ++ +Y T+RE L++ +
Sbjct: 182 ----YHPSLSL---------GTVLLSANQGFSVQGQYGAVTQREVTKLQQLSSHAVPFAT 228
Query: 313 SGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTS 372
+ + G DP T +Q +P +IG G+ I IR+ S
Sbjct: 229 PSV-VPGLDPGTQT----------------SSQEFLVPNDLIGCVIGRQGSKISEIRQMS 271
Query: 373 GAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
GA I + E V I G+ + LAQ LI + K +
Sbjct: 272 GAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|324516472|gb|ADY46541.1| Poly(rC)-binding protein 3 [Ascaris suum]
Length = 360
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 18/164 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG++G+ IK + + A+I + DG S P+RIV I+G
Sbjct: 25 IRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINISDG--SCPERIVTITGN--------- 73
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF--CSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
+D + F + + D+ A + ++RL+VP+TQ +LIGK GS IK I+E
Sbjct: 74 -VDTINKAFSMICNKFQEDMQALPNSVPKPPITMRLIVPATQCGSLIGKGGSKIKEIREA 132
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+GAS++V S + ER V + G A ++ ++ + L
Sbjct: 133 TGASIQVASE----MLPSSTERAVTISGSADAIVLCMQHICHIL 172
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G IKSI++ SGA + + S P ERIV + G
Sbjct: 24 TIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINI-SDGSCP------ERIVTITGNVDT 76
Query: 230 VLKALEAVVGHLRKFLVDQGVLP 252
+ KA + KF D LP
Sbjct: 77 INKAFSMICN---KFQEDMQALP 96
>gi|62087230|dbj|BAD92062.1| poly(rC)-binding protein 2 isoform b variant [Homo sapiens]
Length = 373
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 39/363 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 28 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 77
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 78 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 135
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 136 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 191
Query: 255 EKTYNASI----SQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER-----EPQ 305
K ++ + Q+R T +D +S T S E+ ++ +P
Sbjct: 192 PKPSSSPVIFAGGQDR-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 250
Query: 306 LESRYRL----SGISIYGQDPALSTIRSSA---LGRASGPIVTQIT-QTMQIPISYAEDI 357
L ++L S + + S I SS+ G Q T + IP I
Sbjct: 251 LTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCI 310
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
IG G I IR+ SGA I + + V I G+++ + LAQ LI +++ +
Sbjct: 311 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGM 370
Query: 418 TSS 420
SS
Sbjct: 371 GSS 373
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 27 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 79
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 80 IFKAFAMIIDKLEE 93
>gi|224112243|ref|XP_002316129.1| predicted protein [Populus trichocarpa]
gi|222865169|gb|EEF02300.1| predicted protein [Populus trichocarpa]
Length = 553
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-SGKEEPEA-- 135
V+R + P+ K+GSIIG+ GE+ K+ D+++ I++ + +RIV I S EE
Sbjct: 43 VYRYLCPLRKIGSIIGKGGEIAKQLRADSKSNIRISEAMPGYDERIVTIYSSSEETNLFG 102
Query: 136 ----PVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--F-----CSVRLLVPSTQAINLI 184
V PA DA V RV N+ A+ F +VR+LVP+ Q +I
Sbjct: 103 ETGEYVCPAQDALFMVHDRVIAEDLNNAAAEEEEGEDNFGEVQQVTVRMLVPADQIGCVI 162
Query: 185 GKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
GK G +I++I+ + A +R+ D P + ++ + GE + V KAL V L +
Sbjct: 163 GKGGQVIQNIRSETCAQIRITKDDHLPPLALSIDELLLIHGEPSAVRKALYQVATRLHE 221
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+++RA IKV D I+ IS KE E SP M+AA+R+ R S D K S
Sbjct: 306 QESRASIKVDSSGAEGDDCIIFISAKEFFEDQ-SPTMNAALRLQPRCS-----DKTEKES 359
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G + + RLLV +Q L+GK G++I ++ + A++R++S D P ED+ +V++
Sbjct: 360 GDSVITTRLLVGRSQIGCLMGKGGAIISEMRNQTRANIRIISEDNLPKVAVEDDEMVQVN 419
>gi|297849822|ref|XP_002892792.1| hypothetical protein ARALYDRAFT_471578 [Arabidopsis lyrata subsp.
lyrata]
gi|297338634|gb|EFH69051.1| hypothetical protein ARALYDRAFT_471578 [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 8/157 (5%)
Query: 99 LIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND 158
I + ++T A I+V D I++IS KE E SPA++AA+R+ +R S
Sbjct: 288 FINQIRQETGATIRVNTSETDEDDCIIVISSKEFYEDQ-SPAVNAAIRLQQRCS----EK 342
Query: 159 VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDE 218
V A+ A S RLLV S+Q LIGK G++I ++ + A++R+L ++ P EDE
Sbjct: 343 VGKDANDLAI-STRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDE 401
Query: 219 RIVEMQGEAAKVLKALEAVVGHLR--KFLVDQGVLPL 253
+V++ G +KAL V+ LR F +D G++ L
Sbjct: 402 EMVQITGNPDAAMKALTQVILRLRANSFDMDHGLVLL 438
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 15/176 (8%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-SGKEEPEA-- 135
V+R + PV K GSIIG+ G++ K+ +T++ +++ + +R+V I S EE
Sbjct: 45 VYRYLCPVKKTGSIIGKGGDIAKQIRSETKSNMRINEALPGCEERVVTIYSTNEELNHFG 104
Query: 136 ----PVSPAMDAAVRVFKRVSGLPENDVDAKASGAA---FCSVRLLVPSTQAINLIGKQG 188
V PA+DA +V V ++D +VR+LVPS Q +IGK G
Sbjct: 105 DDGELVCPALDALFKVHDMVVADIDHDDGNDDDDLGEKQTVTVRMLVPSDQIGCVIGKGG 164
Query: 189 SLIKSIQENSGASVRVLSADEAP---FYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+I++++ ++ A +RV+ D P ++ DE ++++ GE V +AL V L
Sbjct: 165 QVIQNLRNDTNAQIRVIK-DHLPSCALTLSHDE-LLQIIGEPLVVREALYQVASLL 218
>gi|148833484|ref|NP_001092090.1| poly(rC)-binding protein 2 isoform c [Homo sapiens]
gi|157042772|ref|NP_001096636.1| poly(rC)-binding protein 2 isoform 3 [Mus musculus]
gi|73996241|ref|XP_857995.1| PREDICTED: poly(rC)-binding protein 2 isoform 20 [Canis lupus
familiaris]
gi|149714839|ref|XP_001504575.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Equus caballus]
gi|291389259|ref|XP_002711066.1| PREDICTED: poly(rC) binding protein 2-like isoform 3 [Oryctolagus
cuniculus]
gi|332206041|ref|XP_003252098.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Nomascus
leucogenys]
gi|348581075|ref|XP_003476303.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Cavia porcellus]
gi|410964551|ref|XP_003988817.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Felis catus]
gi|426224372|ref|XP_004006345.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Ovis aries]
gi|426372755|ref|XP_004053283.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Gorilla gorilla
gorilla]
gi|51491472|dbj|BAD36897.1| poly(rC) binding protein 2 [Homo sapiens]
gi|119617112|gb|EAW96706.1| poly(rC) binding protein 2, isoform CRA_a [Homo sapiens]
gi|148672027|gb|EDL03974.1| poly(rC) binding protein 2, isoform CRA_a [Mus musculus]
gi|149031921|gb|EDL86833.1| rCG50739, isoform CRA_b [Rattus norvegicus]
Length = 331
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 154/358 (43%), Gaps = 59/358 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV---------GHLRKFL 245
+E++GA V+V + D P ER + + G +++ ++ + G +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE-- 303
P+ A Q + D + LH Q A+ + P T + F E
Sbjct: 180 PKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMTHGNTGFSGIESS 236
Query: 304 -PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGG 362
P+++ + G D + T + + IP IIG G
Sbjct: 237 SPEVKGYW-------AGLDASAQT----------------TSHELTIPNDLIGCIIGRQG 273
Query: 363 TSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
I IR+ SGA I + + V I G+++ + LAQ LI +++ + SS
Sbjct: 274 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 331
>gi|186478468|ref|NP_001117282.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|5080792|gb|AAD39302.1|AC007576_25 Unknown protein [Arabidopsis thaliana]
gi|332190995|gb|AEE29116.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 479
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 8/157 (5%)
Query: 99 LIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND 158
I + ++T A I+V D I+ IS KE E SPA++AA+R+ +R S
Sbjct: 290 FINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCS----EK 344
Query: 159 VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDE 218
V A+ A S RLLV S+Q LIGK G++I ++ + A++R+L ++ P EDE
Sbjct: 345 VGKDANDLAI-STRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDE 403
Query: 219 RIVEMQGEAAKVLKALEAVVGHLR--KFLVDQGVLPL 253
+V++ G +KAL V+ LR F +D G++ L
Sbjct: 404 EMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 440
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV-LISGKEEPEA-- 135
V+R + PV K GSIIG+ GE+ K+ +T++ +++ + +R+V + S EE
Sbjct: 45 VYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFG 104
Query: 136 ----PVSPAMDAAVRVFKRVSGLPENDVDAKASGAA----FCSVRLLVPSTQAINLIGKQ 187
V PA+DA +V V + D +VR+LVPS Q +IGK
Sbjct: 105 DDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKG 164
Query: 188 GSLIKSIQENSGASVRVLSADEAP---FYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
G +I++++ ++ A +RV+ D P ++ DE ++ + GE V +AL V L
Sbjct: 165 GQVIQNLRNDTNAQIRVIK-DHLPACALTLSHDELLL-IIGEPLVVREALYQVASLL 219
>gi|354490193|ref|XP_003507244.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Cricetulus
griseus]
Length = 331
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 155/359 (43%), Gaps = 61/359 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV---------GHLRKFL 245
+E++GA V+V + D P ER + + G +++ ++ + G +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE-- 303
P+ A Q + D + LH Q A+ + P T + F E
Sbjct: 180 PKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMTHGNTGFSGIESS 236
Query: 304 -PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGG 362
P+++ + G D + T + + IP IIG G
Sbjct: 237 SPEVKGYW-------AGLDASAQT----------------TSHELTIPNDLIGCIIGRQG 273
Query: 363 TSIENIRRTSGA-IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
I IR+ SGA I T G D V I G+++ + LAQ LI +++ + SS
Sbjct: 274 AKINEIRQMSGAQIKTANPVEGSTDR-QVTITGSAASISLAQYLINVRLSSETGGMGSS 331
>gi|296213265|ref|XP_002753197.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Callithrix
jacchus]
Length = 342
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 78/371 (21%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S + L+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDIRSSMTNSTAASRPPVTLSLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV-----DQG 249
+E++GA V+V + D P ER + + G +++ ++ + F+V +G
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQI------FVVMLESPPKG 173
Query: 250 VL----------PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLF 299
V P+ A Q + D + LH Q AI + P T + F
Sbjct: 174 VTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAIQQSHFPMTHGNTGF 230
Query: 300 LEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIG 359
G D + T + + IP IIG
Sbjct: 231 SA-----------------GLDASAQT----------------TSHELTIPNDLIGCIIG 257
Query: 360 VGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITS 419
G I IR+ SGA I + + V I G+++ + LAQ LI ++ + S
Sbjct: 258 RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSLVTGGMGS 317
Query: 420 SYGQIDTGYRP 430
SY D+ P
Sbjct: 318 SYNNADSSIIP 328
>gi|126336339|ref|XP_001367908.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Monodelphis
domestica]
Length = 410
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 145/358 (40%), Gaps = 83/358 (23%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RMI+ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G +
Sbjct: 20 LRMIMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGS-------TG 70
Query: 140 AMDAAVRV--FKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKS 193
A+ AV + FK L E+ +G + ++RL++P++Q +LIGK G+ IK
Sbjct: 71 AVFHAVSMIAFK----LDEDLCTGPPNGGSISKPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 194 IQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPL 253
I+E +GA V+V + D P ER V + G
Sbjct: 127 IRETTGAQVQV-AGDLLP---NSTERAVTVSG---------------------------- 154
Query: 254 FEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLS 313
+A I RQ+ +S AT Y PS ++ L
Sbjct: 155 ---VPDAIILCVRQICAVILESPPKGAT-----IPYHPSLSLGTVLLSAN---------Q 197
Query: 314 GISIYGQDPALSTIRSSALGRASG---------------PIVTQITQTMQIPISYAEDII 358
G S+ GQ ++ S L + SG P +Q +P +I
Sbjct: 198 GFSVQGQYGTVTPAEVSKLQQLSGHPVPFASPSVVPGLDPSAQTSSQEFLVPNDLIGCVI 257
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
G G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 258 GRQGSKISEIRQMSGAHIKIGNQAEGSGERHVTITGSPVSIALAQYLITACLETAKST 315
>gi|50545305|ref|XP_500190.1| YALI0A18161p [Yarrowia lipolytica]
gi|49646055|emb|CAG84122.1| YALI0A18161p [Yarrowia lipolytica CLIB122]
Length = 385
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 145/346 (41%), Gaps = 55/346 (15%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
V R +V + G IIG+ G + + + + V PDRI+ ++G A VS
Sbjct: 68 VLRALVSTKEAGVIIGKDGATVAGLRDAAKVKAGVTKSVAGIPDRILSVAGT---AAGVS 124
Query: 139 PA--MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A + AA V SG N V G +VRLL+P + +++GK G IK+IQ
Sbjct: 125 RAIGLAAAALVAHPPSGYVLNLVPPGPQGT--TTVRLLIPHQRMGSILGKGGVRIKAIQA 182
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
G + V S P ERIVE+QGE + A+ VV L L EK
Sbjct: 183 KYGVRI-VASKHRLPH---SSERIVEIQGEPLALQTAVYTVVQCL-----------LEEK 227
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGIS 316
DKS L A Y P + S+ L +P+ + +G
Sbjct: 228 ----------------DKSILVA--------YYNPRSLEGSMTLREDPEDKEYVSFAGYR 263
Query: 317 IYGQDPA--LSTIRSSALGRASGPI-----VTQITQTMQIPISYAEDIIGVGGTSIENIR 369
QD T R + + G Q+ IP S+A IIG G +I +R
Sbjct: 264 GRHQDGGSDTDTDREATVSDHGGDAEALSSSDACVQSTIIPASFAGYIIGRRGDNIRELR 323
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
+ SGA I++ S E T+ ++G+ + V LA ++Q+ M+ +E
Sbjct: 324 KRSGAAISI--SSEYERERTLLMRGSEAAVALAMSMLQQQMDEERE 367
>gi|324519086|gb|ADY47282.1| Poly(rC)-binding protein 3 [Ascaris suum]
Length = 342
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 18/164 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG++G+ IK + + A+I + DG S P+RIV I+G
Sbjct: 25 IRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINISDG--SCPERIVTITGN--------- 73
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF--CSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
+D + F + + D+ A + ++RL+VP+TQ +LIGK GS IK I+E
Sbjct: 74 -VDTINKAFSMICNKFQEDMQALPNSVPKPPITMRLIVPATQCGSLIGKGGSKIKEIREA 132
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+GAS++V S + ER V + G A ++ ++ + L
Sbjct: 133 TGASIQVASE----MLPSSTERAVTISGSADAIVLCMQHICHIL 172
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G IKSI++ SGA + + S P ERIV + G
Sbjct: 24 TIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINI-SDGSCP------ERIVTITGNVDT 76
Query: 230 VLKALEAVVGHLRKFLVDQGVLP 252
+ KA + KF D LP
Sbjct: 77 INKAFSMIC---NKFQEDMQALP 96
>gi|308460519|ref|XP_003092563.1| CRE-PES-4 protein [Caenorhabditis remanei]
gi|308253083|gb|EFO97035.1| CRE-PES-4 protein [Caenorhabditis remanei]
Length = 436
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 14/151 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KG+ IKK E++ A+I + DG S P+RIV I+G +
Sbjct: 75 IRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG--SCPERIVTITGTL---GVIGK 129
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + F+ L N V ++R++VP+TQ +LIGK GS IK I+E +G
Sbjct: 130 AFNMVCNKFEEDMLLLPNSVPKPP-----ITMRVIVPATQCGSLIGKGGSKIKDIREATG 184
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
AS++V S + P ER V + G A +
Sbjct: 185 ASIQVAS-EMLPH---STERAVTLSGTADAI 211
>gi|392894107|ref|NP_497351.3| Protein PES-4 [Caenorhabditis elegans]
gi|373220643|emb|CCD73932.1| Protein PES-4 [Caenorhabditis elegans]
Length = 432
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 14/159 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KG+ IKK E++ A+I + DG S P+RIV I+G +
Sbjct: 74 IRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG--SCPERIVTITGTL---GVIGK 128
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + F+ L N V ++R++VP+TQ +LIGK GS IK I+E +G
Sbjct: 129 AFNMVCNKFEEDMLLLPNSVPKPP-----ITMRVIVPATQCGSLIGKGGSKIKDIREATG 183
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
AS++V S + P ER V + G A + + V
Sbjct: 184 ASIQVAS-EMLPH---STERAVTLSGTADAINLCMTQVC 218
>gi|79317957|ref|NP_001031044.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|222424209|dbj|BAH20063.1| AT1G14170 [Arabidopsis thaliana]
gi|332190994|gb|AEE29115.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 446
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 8/157 (5%)
Query: 99 LIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND 158
I + ++T A I+V D I+ IS KE E SPA++AA+R+ +R S
Sbjct: 257 FINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCS----EK 311
Query: 159 VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDE 218
V A+ A S RLLV S+Q LIGK G++I ++ + A++R+L ++ P EDE
Sbjct: 312 VGKDANDLAI-STRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDE 370
Query: 219 RIVEMQGEAAKVLKALEAVVGHLR--KFLVDQGVLPL 253
+V++ G +KAL V+ LR F +D G++ L
Sbjct: 371 EMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 407
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV-LISGKEEPEA-- 135
V+R + PV K GSIIG+ GE+ K+ +T++ +++ + +R+V + S EE
Sbjct: 12 VYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFG 71
Query: 136 ----PVSPAMDAAVRVFKRVSGLPENDVDAKASGAA----FCSVRLLVPSTQAINLIGKQ 187
V PA+DA +V V + D +VR+LVPS Q +IGK
Sbjct: 72 DDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKG 131
Query: 188 GSLIKSIQENSGASVRVLSADEAP---FYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
G +I++++ ++ A +RV+ D P ++ DE ++ + GE V +AL V L
Sbjct: 132 GQVIQNLRNDTNAQIRVIK-DHLPACALTLSHDELLL-IIGEPLVVREALYQVASLL 186
>gi|403286483|ref|XP_003934516.1| PREDICTED: poly(rC)-binding protein 1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286485|ref|XP_003934517.1| PREDICTED: poly(rC)-binding protein 1-like isoform 2 [Saimiri
boliviensis boliviensis]
Length = 376
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 171/370 (46%), Gaps = 38/370 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+ E +K+ E++ AR + +G + P+RI+ ++G P
Sbjct: 16 IRLLMHGKEVGSIIGKNEESVKRIREESGARFSISEG--NCPERIITLTG------PTCA 67
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + ++ E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 68 IFKAFAMMINKL----EEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL--VDQG-VL 251
+E++GA V+V S D P E+ + + V + ++ + + + L QG V+
Sbjct: 124 RESTGAQVQV-SGDMLP---NSTEQAITVAVVPQSVTECVQQICLVMLETLPQCPQGRVM 179
Query: 252 PLFEKTYNAS--ISQERQVETWADKSSL-HAATQSAISTEYTPSTRRES----LFLEREP 304
P+ + AS ++ + +D + HA + ST+ + L L +
Sbjct: 180 PIPYQPMPASSPVTCAGGQDRGSDAAGYPHATRDLGVPPLDACSTQGQHTISPLHLAKLN 239
Query: 305 QLESRYRLSGISIYGQDPALSTIRSSALG----RASGPIVTQITQTMQIPISYAEDIIGV 360
Q+ + S I++ + I SS+ RAS TQ T + IP + IIG
Sbjct: 240 QVARQQ--SHIAMLHGGTGFAGIESSSPEVKGYRASLDASTQTTHELTIPNNLIGCIIGR 297
Query: 361 GGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
G +I IR+ SGA I + V I G+++ + LAQ LI + + K + S
Sbjct: 298 QGVNINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLFSEK-GMGCS 356
Query: 421 YGQIDTGYRP 430
Y + + + P
Sbjct: 357 YNNVGSLHNP 366
>gi|164655395|ref|XP_001728827.1| hypothetical protein MGL_3994 [Malassezia globosa CBS 7966]
gi|159102713|gb|EDP41613.1| hypothetical protein MGL_3994 [Malassezia globosa CBS 7966]
Length = 382
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 164/405 (40%), Gaps = 88/405 (21%)
Query: 27 ESPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPV 86
+SP+ + AP G NT TT+S S+ P PG V R ++
Sbjct: 51 QSPSLYASAPALSGVTNTS-TTQSPSSY----------------TPSTPGPIVMRALIIT 93
Query: 87 LKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVR 146
IIG++G I + E + AR+ + + S+P+RI+ +SG A+DA +
Sbjct: 94 SDASVIIGKQGRHINEIRELSNARLNISESIPSNPERILTVSG----------ALDAVSK 143
Query: 147 VF----KRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASV 202
F +R++ P + S AA S+R ++P+++ +IG+QGS IK IQE SGA
Sbjct: 144 AFGLLVRRINDEPFDQPSLPGSRAA--SIRFIIPNSRMGAIIGRQGSKIKEIQEASGAR- 200
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASI 262
L A E ERI+ + G V AL V ++ L++
Sbjct: 201 --LHAGET-MLPGSTERILSITG----VADALHIAVYYVGATLLEH-------------- 239
Query: 263 SQERQVETWADKSSLHAATQ-SAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQD 321
D+ S + + +A++ TPS L P + +S
Sbjct: 240 ---------PDRGSNNLPYRPAAVNRALTPS-------LVGSPLNSPSASMLALSATNSP 283
Query: 322 PALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES 381
AL+++ + L TQ + IP IIG GG I IR+ S + I + E
Sbjct: 284 KALASVLTPGLQ----------TQQIFIPNDLVGCIIGKGGQKINEIRQLSASHIKIMER 333
Query: 382 R------GLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
G E V I G +Q+A L+ + + K + S
Sbjct: 334 NAGIAAGGSGSERLVTITGPPPNIQMAVTLLYQRLEQEKMRLAHS 378
>gi|341891904|gb|EGT47839.1| CBN-PES-4 protein [Caenorhabditis brenneri]
Length = 438
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 14/151 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KG+ IKK E++ A+I + DG S P+RIV I+G +
Sbjct: 78 IRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG--SCPERIVTITGTL---GVIGK 132
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + F+ L N V ++R++VP+TQ +LIGK GS IK I+E +G
Sbjct: 133 AFNMVCNKFEEDMLLLPNSVPKPP-----ITMRVIVPATQCGSLIGKGGSKIKDIREATG 187
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
AS++V S + P ER V + G A +
Sbjct: 188 ASIQVAS-EMLPH---STERAVTLSGTADAI 214
>gi|196009850|ref|XP_002114790.1| hypothetical protein TRIADDRAFT_28388 [Trichoplax adhaerens]
gi|190582852|gb|EDV22924.1| hypothetical protein TRIADDRAFT_28388 [Trichoplax adhaerens]
Length = 360
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 162/371 (43%), Gaps = 65/371 (17%)
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPE 134
V ++++P GSIIG+ G++I D++ RI++ + P +R+++I+G
Sbjct: 22 VVLKLLIPNYAAGSIIGKGGDVINDLQNDSKTRIRLSHNNDTFPGTKERVIVITGSI--- 78
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV---------RLLVPSTQAINLIG 185
A VR R L + + KA A V +++VP+ A +IG
Sbjct: 79 --------AGVRQVNRFI-LEKVSEEGKADKAIQYGVLDKNRNRQLKMIVPNAAAGVIIG 129
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
K GS IK IQ+ SGA V+V S +A + + DERI+ + GE + L A E ++ K L
Sbjct: 130 KGGSNIKEIQDKSGAHVQV-SQKKAQYAI--DERILTVTGEFNERLTAWELIIW---KCL 183
Query: 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHA------------ATQSAISTEYTPST 293
D LP N S+S VE +LH+ SA S + S
Sbjct: 184 EDINNLP------NTSVSYS-HVEPAGTLPALHSNYYGGGNANDRPMDSSAASYDPYTSE 236
Query: 294 RRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISY 353
R + ++ Q + +Y G+ Y P R S+ G + + +P S
Sbjct: 237 RYSPTQVTQDAQADRQY---GMQSY--PPTARNNRPSSYG--------ETVIKIPVPDSI 283
Query: 354 AEDIIGVGGTSIENIRRTSGAIITV-QESRGLP--DEITVEIKGTSSQVQLAQQLIQEYM 410
I+G G I +I+ SGA I V Q +P + V + GT+ A +LI+ Y+
Sbjct: 284 IGAILGKRGKVISDIQNISGAHIQVSQRGDYIPGTKDREVTVTGTNDAAHYADKLIKGYL 343
Query: 411 NNHKESITSSY 421
+ + S++
Sbjct: 344 DKEYKKQASNF 354
>gi|30683629|ref|NP_172869.2| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30102666|gb|AAP21251.1| At1g14170 [Arabidopsis thaliana]
gi|110743444|dbj|BAE99608.1| hypothetical protein [Arabidopsis thaliana]
gi|332190993|gb|AEE29114.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 454
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 8/157 (5%)
Query: 99 LIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND 158
I + ++T A I+V D I+ IS KE E SPA++AA+R+ +R S
Sbjct: 265 FINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCS----EK 319
Query: 159 VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDE 218
V A+ A S RLLV S+Q LIGK G++I ++ + A++R+L ++ P EDE
Sbjct: 320 VGKDANDLAI-STRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDE 378
Query: 219 RIVEMQGEAAKVLKALEAVVGHLR--KFLVDQGVLPL 253
+V++ G +KAL V+ LR F +D G++ L
Sbjct: 379 EMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 415
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV-LISGKEEPEA-- 135
V+R + PV K GSIIG+ GE+ K+ +T++ +++ + +R+V + S EE
Sbjct: 20 VYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFG 79
Query: 136 ----PVSPAMDAAVRVFKRVSGLPENDVDAKASGAA----FCSVRLLVPSTQAINLIGKQ 187
V PA+DA +V V + D +VR+LVPS Q +IGK
Sbjct: 80 DDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKG 139
Query: 188 GSLIKSIQENSGASVRVLSADEAP---FYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
G +I++++ ++ A +RV+ D P ++ DE ++ + GE V +AL V L
Sbjct: 140 GQVIQNLRNDTNAQIRVIK-DHLPACALTLSHDELLL-IIGEPLVVREALYQVASLL 194
>gi|345311367|ref|XP_001520914.2| PREDICTED: poly(rC)-binding protein 4-like [Ornithorhynchus
anatinus]
Length = 447
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 152/360 (42%), Gaps = 48/360 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 19 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTG------- 69
Query: 140 AMDAAVRV--FKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
A+ AV + FK L + + ++RL++P++Q +LIGK G+ IK I+E+
Sbjct: 70 AVFHAVSMIAFKLDEDLCTGPPNGGSVSKPPVTLRLVIPASQCGSLIGKAGAKIKEIRES 129
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLP----- 252
+GA V+V + D P ER V + G ++ + + + + +P
Sbjct: 130 TGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSL 185
Query: 253 -----LFEKTYNASIS---QER-------QVETWADK-SSLHAATQSAISTEYTPSTRRE 296
L A+I+ QER QVE + + L Q A+ +
Sbjct: 186 SLGTVLLSTNQVANIAIQKQERGSNRQYHQVEHGSGQPGKLRGNGQEAVEV----AAVSM 241
Query: 297 SLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAED 356
EP++ +LSG + P++ P +Q +P
Sbjct: 242 GPLPPPEPKVSKLQQLSGPPVPFTSPSVVP--------GLDPGAQTSSQEFLVPNDLIGC 293
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+IG G+ I IR+ SGA I + E V I G+ + LAQ LI + K +
Sbjct: 294 VIGRQGSKISEIRQMSGAHIKIGNQTEGSGERHVTITGSPVSIALAQYLITACLETAKST 353
>gi|124359391|gb|ABN05855.1| KH, type 1 [Medicago truncatula]
Length = 222
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 66 PEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P ++ P GH FR++ ++G +IG+ G +IK T A+I++ D P SPDR++
Sbjct: 36 PPQQPLPIPAGHVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVI 95
Query: 126 LISGKEEPEAP--------------VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
++ G + VS A +A +RVF R+ + +++ G S
Sbjct: 96 MVIGASNIDGKVMVRSHSGDGEAIEVSKAQEALLRVFDRILEVAA-EMEGIELGDRTVSC 154
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVL 231
RL+ S QA ++IGK G +++ I++++G + V D P ++ + ++E +
Sbjct: 155 RLVADSAQAGSVIGKGGKVVEKIKKDTGCKIWVCK-DNLPACISSPDEVIECSASRSMFG 213
Query: 232 KALEAVV 238
A+ +V
Sbjct: 214 SAVTRIV 220
>gi|268570691|ref|XP_002640810.1| C. briggsae CBR-PES-4 protein [Caenorhabditis briggsae]
Length = 447
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 14/148 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KG+ IKK E++ A+I + DG S P+RIV I+G +
Sbjct: 76 IRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG--SCPERIVTITGTL---GVIGK 130
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + F+ L N V ++R++VP+TQ +LIGK GS IK I+E +G
Sbjct: 131 AFNMVCNKFEEDMLLLPNSVPKPP-----ITMRVIVPATQCGSLIGKGGSKIKDIREATG 185
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEA 227
AS++V S + P ER V + G A
Sbjct: 186 ASIQVAS-EMLPH---STERAVTLSGTA 209
>gi|196016215|ref|XP_002117961.1| hypothetical protein TRIADDRAFT_61998 [Trichoplax adhaerens]
gi|190579434|gb|EDV19529.1| hypothetical protein TRIADDRAFT_61998 [Trichoplax adhaerens]
Length = 364
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 142/329 (43%), Gaps = 38/329 (11%)
Query: 90 GSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFK 149
G IIG+ G IK E + ARI + DG S P+RIV ++G +DA + FK
Sbjct: 58 GRIIGKGGAKIKSFREQSTARINISDG--SLPERIVTVNG----------PIDAVCKAFK 105
Query: 150 RVSGLPEND---VDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLS 206
+ + D ++ + LL+P ++IGK G +K I+E++GA V + S
Sbjct: 106 LICQKLDEDFRIINNSSKSEPTIKFDLLIPVPHCRSIIGKGGGTVKEIRESTGAQVSIAS 165
Query: 207 ADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQER 266
+ P +R++ + G ++ + K ++ + L + + Q V P K N
Sbjct: 166 -NVLP---NSSDRVMTITGSSSAISKCIQRLSQLLSELPLGQHV-PYQPKPPNVP----- 215
Query: 267 QVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQD-PALS 325
T +H T + P + L P + ++ I+ Y D P++
Sbjct: 216 --PTAFQNGQVHELTFAVPGPFPIPPHAQ----LPYGPPVPV---ITQIAPYSVDIPSIV 266
Query: 326 TIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLP 385
T SA+ ++G + TQ ++IP IIG GG I IR+ SGA I + G
Sbjct: 267 TQNFSAM--SNGGTFARSTQLLKIPHDLIGCIIGRGGVKINEIRQISGANIKIASPNGDT 324
Query: 386 DEITVEIKGTSSQVQLAQQLI-QEYMNNH 413
V I GT + AQ LI Q Y H
Sbjct: 325 TGRQVTISGTPESISAAQYLISQSYKGLH 353
>gi|334350022|ref|XP_003342305.1| PREDICTED: poly(rC)-binding protein 2-like [Monodelphis domestica]
Length = 320
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 148/345 (42%), Gaps = 59/345 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV---------GHLRKFL 245
+E++GA V+V + D P ER + + G +++ ++ + G +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE-- 303
P+ A Q + D + LH Q A+ + P T + F E
Sbjct: 180 PKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMTHGNTGFSGIESS 236
Query: 304 -PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGG 362
P+++ + G D + T + + IP IIG G
Sbjct: 237 SPEVKGYW-------AGLDASAQT----------------TSHELTIPNDLIGCIIGRQG 273
Query: 363 TSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
I IR+ SGA I + + V I G+++ + LAQ LI
Sbjct: 274 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 318
>gi|413953982|gb|AFW86631.1| hypothetical protein ZEAMMB73_253509 [Zea mays]
Length = 581
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
+FR++ P KV +++ +++ D +++ D S +R+V+I+ +E P+ +
Sbjct: 343 IFRILCPNDKVDNLVATNDGILEMLQADVGVDVRLSDIIAGSDERVVIITSREGPDHELF 402
Query: 139 PAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PA +A + + + L P+ D + RLLVPS++ G++GSL IQ
Sbjct: 403 PAQEAVLHIQTHIVDLGPDKD--------NIITTRLLVPSSEIACFDGREGSL-SDIQRQ 453
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
+ A+V++L ++ P E + ++++ GE + AL V LR FL
Sbjct: 454 TSANVQILPKEDLPLCALESDELIQIVGEISAARNALIQVTTKLRSFL 501
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAA 228
+ RL+VP L+GK G +I+ ++ + +R+L D+ P V+ E +V++ G+
Sbjct: 192 TTRLIVPKMHVGCLLGKGGKIIEQMRMETKTHIRILPRDQHTPRCVSLSEEVVQVVGDGN 251
Query: 229 KVLKALEAVVGHLRKFL 245
V KA+ + L++ L
Sbjct: 252 CVKKAVAIITDRLKESL 268
>gi|449433573|ref|XP_004134572.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 625
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 88/372 (23%), Positives = 161/372 (43%), Gaps = 59/372 (15%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV----LISGKEEPE 134
V+R++ P +GS+IG+ G++I ++TRA+IKV+D + DR++ + KE+ E
Sbjct: 37 VYRILCPDEVIGSVIGKSGKVINSIRQETRAKIKVVDPFPGAKDRVITIFCFVKDKEDVE 96
Query: 135 AP--------VSPAMDAAVRVF--KRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLI 184
+ A DA ++V + D+D K C ++L+PS+Q+ N+I
Sbjct: 97 VDDEFNDRQTLCAAQDALLKVHAAIANALASAGDLDRKQRDKEQC--QILIPSSQSANVI 154
Query: 185 GKQGSLIKSIQENSGASVRVLSADEA-PFY--VTEDERIVEMQGEAAKVLKALEAVVGHL 241
GK GS IK ++ + S+++ D P + + + + GE V +AL A+ +
Sbjct: 155 GKAGSTIKKLRSKTRTSIKISPKDATDPIHSCAMDFDNFAVIAGEPEGVRRALFAISSIM 214
Query: 242 RKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE 301
KF + + PL ++++ A + I P L+
Sbjct: 215 YKFPPREEI-PL--------------------DTNVNEAPPNIIIPSDVPLYSAGGLYPS 253
Query: 302 REPQLESR--------YRLSGISIYGQDPALSTIRSSAL-----GRASGPIVTQITQTMQ 348
+P L R + + Y + + SS+L G + P ++ +
Sbjct: 254 ADPILPPRSIPPMLGAQHVQDLHDYPESGNAWPLYSSSLPVVPGGISGHPPSEELVVRVL 313
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQ---- 404
P +IG GG +I++IR+ SGA + V +++ DE + I S L
Sbjct: 314 CPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRDCDECIITISSFESLDDLKSMAVET 373
Query: 405 --LIQEYMNNHK 414
L+QE +N+ +
Sbjct: 374 VLLLQEKINDDE 385
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 29/217 (13%)
Query: 36 PPTIGSENTEHTT---ESDSALP--QSTGPDAAAVPEEKKWPGWPGH-----CVFRMIVP 85
PP +G+++ + ES +A P S+ P VP G GH V R++ P
Sbjct: 264 PPMLGAQHVQDLHDYPESGNAWPLYSSSLP---VVPG-----GISGHPPSEELVVRVLCP 315
Query: 86 VLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAV 145
+G +IG+ G IK + + AR++V D + I+ IS E + S A++ +
Sbjct: 316 FDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRDCDECIITISSFESLDDLKSMAVETVL 375
Query: 146 RVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL 205
L + ++ G +RLL+PS +IGK GS+I I++++ A +R+
Sbjct: 376 --------LLQEKINDDEGGTVI--MRLLIPSKVIGCIIGKSGSIINEIRKSTRADIRIS 425
Query: 206 SADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
D+ + DE +VE+ G+ V AL +V LR
Sbjct: 426 KGDKLKCASSSDE-LVEVTGKVGCVRDALVQIVLRLR 461
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 347 MQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
M IP + A +IG GG +I NIR+ SGA+I + +S+ + I GTS Q + A+ LI
Sbjct: 559 MLIPANAAGKVIGKGGANIANIRKISGALIEISDSKSSRGDRIALISGTSEQKRTAENLI 618
Query: 407 QEYM 410
Q ++
Sbjct: 619 QAFI 622
>gi|67969673|dbj|BAE01185.1| unnamed protein product [Macaca fascicularis]
Length = 324
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 142/337 (42%), Gaps = 71/337 (21%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G +A +
Sbjct: 5 EVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT----------NAIFKA 52
Query: 148 FKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSIQENSGASV 202
F + E D+ + + + S +RL+VP++Q +LIGK G IK I+E++GA V
Sbjct: 53 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 112
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGVL-------- 251
+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 113 QV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPS 168
Query: 252 --PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESR 309
P+ A Q + D + LH Q A+ + P T + F
Sbjct: 169 SSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMTHGNTGF---------- 215
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
SG+ Q + + IP IIG G I IR
Sbjct: 216 ---SGLDASAQT---------------------TSHELTIPNDLIGCIIGRQGAKINEIR 251
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
+ SGA I + + V I G+++ + LAQ LI
Sbjct: 252 QMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 288
>gi|449525363|ref|XP_004169687.1| PREDICTED: KH domain-containing protein At4g18375-like, partial
[Cucumis sativus]
Length = 531
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 160/370 (43%), Gaps = 59/370 (15%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV----LISGKEEPE 134
V+R++ P +GS+IG+ G++I ++TRA+IKV+D + DR++ + KE+ E
Sbjct: 37 VYRILCPDEVIGSVIGKSGKVINSIRQETRAKIKVVDPFPGAKDRVITIFCFVKDKEDVE 96
Query: 135 AP--------VSPAMDAAVRVF--KRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLI 184
+ A DA ++V + D+D K C ++L+PS+Q+ N+I
Sbjct: 97 VDDEFNDRQTLCAAQDALLKVHAAIANALASAGDLDRKQRDKEQC--QILIPSSQSANVI 154
Query: 185 GKQGSLIKSIQENSGASVRVLSADEA-PFY--VTEDERIVEMQGEAAKVLKALEAVVGHL 241
GK GS IK ++ + S+++ D P + + + + GE V +AL A+ +
Sbjct: 155 GKAGSTIKKLRSKTRTSIKISPKDATDPIHSCAMDFDNFAVIAGEPEGVRRALFAISSIM 214
Query: 242 RKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE 301
KF + + PL ++++ A + I P L+
Sbjct: 215 YKFPPREEI-PL--------------------DTNVNEAPPNIIIPSDVPLYSAGGLYPS 253
Query: 302 REPQLESR--------YRLSGISIYGQDPALSTIRSSAL-----GRASGPIVTQITQTMQ 348
+P L R + + Y + + SS+L G + P ++ +
Sbjct: 254 ADPILPPRSIPPMLGAQHVQDLHDYPESGNAWPLYSSSLPVVPGGISGHPPSEELVVRVL 313
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQ---- 404
P +IG GG +I++IR+ SGA + V +++ DE + I S L
Sbjct: 314 CPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRDCDECIITISSFESLDDLKSMAVET 373
Query: 405 --LIQEYMNN 412
L+QE +N+
Sbjct: 374 VLLLQEKIND 383
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 100/215 (46%), Gaps = 25/215 (11%)
Query: 36 PPTIGSENTEHTT---ESDSALPQSTGPDAAAVPEEKKWPGWPGH-----CVFRMIVPVL 87
PP +G+++ + ES +A P + VP G GH V R++ P
Sbjct: 264 PPMLGAQHVQDLHDYPESGNAWPLYSS-SLPVVPG-----GISGHPPSEELVVRVLCPFD 317
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+G +IG+ G IK + + AR++V D + I+ IS E + S A++ +
Sbjct: 318 NIGRVIGKGGGTIKSIRQASGARVEVDDTKRDCDECIITISSFESLDDLKSMAVETVL-- 375
Query: 148 FKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA 207
L + ++ G +RLL+PS +IGK GS+I I++++ A +R+
Sbjct: 376 ------LLQEKINDDEGGTVI--MRLLIPSKVIGCIIGKSGSIINEIRKSTRADIRISKG 427
Query: 208 DEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
D+ + DE +VE+ G+ V AL +V LR
Sbjct: 428 DKLKCASSSDE-LVEVTGKVGCVRDALVQIVLRLR 461
>gi|224116392|ref|XP_002317286.1| predicted protein [Populus trichocarpa]
gi|222860351|gb|EEE97898.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 19/186 (10%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-------- 127
G V+R++ P +GS+IG+ G++I ++RAR+KV+D + DRI+ I
Sbjct: 34 GLIVYRILCPDGVIGSVIGKSGKVINSIRHESRARVKVVDPFPGAKDRIITIYCHIKEKE 93
Query: 128 ----SGKEEPEAPVSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAI 181
P+ A DA ++V +S + D D + C ++LVP++Q+
Sbjct: 94 DVDVDDDFNHTNPLCAAQDALLKVHAAISNAVASLGDSDKRLRDKEEC--QILVPASQSA 151
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEA-PFY--VTEDERIVEMQGEAAKVLKALEAVV 238
N+IGK G+ IK ++ + S+++++ D P + + + + + GE+ V KAL AV
Sbjct: 152 NIIGKAGATIKRLRSKTRTSIKIIAKDSTDPTHSCAMDFDNFLLITGESEAVKKALFAVS 211
Query: 239 GHLRKF 244
+ KF
Sbjct: 212 AIMYKF 217
>gi|308321889|gb|ADO28082.1| poly(rc)-binding protein 2 [Ictalurus furcatus]
Length = 318
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 158/350 (45%), Gaps = 56/350 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTT- 66
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + F + E D+ + S + S +R++VP++Q +LIGK G IK I
Sbjct: 67 ---AIFKAFSMIIDKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGTPLSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + T+A + Q AI +P L ++L+
Sbjct: 180 PKPSGSPV-------TFAGGQAYAVQGQHAIP----------------QPDLTKLHQLA- 215
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQT----MQIPISYAEDIIGVGGTSIENIRR 370
Q P + S+ G +G T TQT + IP IIG G I IR+
Sbjct: 216 ---MQQSPF--PLAPSSQGFTAGMDAT--TQTGSHELTIPNDLIGCIIGRQGAKINEIRQ 268
Query: 371 TSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
SGA I + ++ V I G+ + + LA+ LI +++ + ++
Sbjct: 269 MSGAQIKIANPVEGSNDRQVTITGSPASISLAEYLINARLSSEATGLATN 318
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTTA 67
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 68 IFKAFSMIIDKL 79
>gi|392347468|ref|XP_003749842.1| PREDICTED: poly(rC)-binding protein 1 [Rattus norvegicus]
Length = 516
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 176 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGP--------- 224
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 225 -TNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 283
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 284 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 323
>gi|397521888|ref|XP_003831016.1| PREDICTED: poly(rC)-binding protein 1 [Pan paniscus]
Length = 455
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 115 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGP--------- 163
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 164 -TNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 222
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 223 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 262
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 114 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 166
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 167 IFKAFAMIIDKL 178
>gi|291327528|ref|NP_001167544.1| poly(rC)-binding protein 2 isoform 4 [Mus musculus]
gi|348581081|ref|XP_003476306.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Cavia porcellus]
gi|74149644|dbj|BAE36444.1| unnamed protein product [Mus musculus]
gi|194378584|dbj|BAG63457.1| unnamed protein product [Homo sapiens]
gi|417398924|gb|JAA46495.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 322
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 152/359 (42%), Gaps = 70/359 (19%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGVL 251
+E++GA V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVT 179
Query: 252 ----------PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE 301
P+ A Q + D + LH Q A+ + P T + F
Sbjct: 180 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMTHGNTGFSA 236
Query: 302 REPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVG 361
G D + T + + IP IIG
Sbjct: 237 -----------------GLDASAQT----------------TSHELTIPNDLIGCIIGRQ 263
Query: 362 GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
G I IR+ SGA I + + V I G+++ + LAQ LI +++ + SS
Sbjct: 264 GAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 322
>gi|242021846|ref|XP_002431354.1| polyrC binding protein, putative [Pediculus humanus corporis]
gi|212516622|gb|EEB18616.1| polyrC binding protein, putative [Pediculus humanus corporis]
Length = 234
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 18/133 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G
Sbjct: 17 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG---------- 64
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF------CSVRLLVPSTQAINLIGKQGSLIKS 193
+A + F + E + ++ G + ++RL+VP++Q +LIGK GS IK
Sbjct: 65 PTNAIFKAFSLICKKFEEFQELQSGGGSMGIPKPPITLRLIVPASQCGSLIGKGGSKIKE 124
Query: 194 IQENSGASVRVLS 206
I+E +GAS++V S
Sbjct: 125 IREVTGASIQVAS 137
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RL++ + ++IGK+G ++K +E SGA + + S P ERIV + G
Sbjct: 16 TIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINI-SDGSCP------ERIVTVTGPTNA 68
Query: 230 VLKALEAVVGHLRKF 244
+ KA + +F
Sbjct: 69 IFKAFSLICKKFEEF 83
>gi|354490197|ref|XP_003507246.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Cricetulus
griseus]
Length = 322
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/360 (25%), Positives = 153/360 (42%), Gaps = 72/360 (20%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGVL 251
+E++GA V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVT 179
Query: 252 ----------PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE 301
P+ A Q + D + LH Q A+ + P T + F
Sbjct: 180 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMTHGNTGFSA 236
Query: 302 REPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVG 361
G D + T + + IP IIG
Sbjct: 237 -----------------GLDASAQT----------------TSHELTIPNDLIGCIIGRQ 263
Query: 362 GTSIENIRRTSGA-IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
G I IR+ SGA I T G D V I G+++ + LAQ LI +++ + SS
Sbjct: 264 GAKINEIRQMSGAQIKTANPVEGSTDR-QVTITGSAASISLAQYLINVRLSSETGGMGSS 322
>gi|392340090|ref|XP_002726454.2| PREDICTED: poly(rC)-binding protein 1, partial [Rattus norvegicus]
Length = 365
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 25 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 74
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 75 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 132
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 133 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 172
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 24 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 76
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 77 IFKAFAMIIDKL 88
>gi|302143921|emb|CBI23026.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 150/334 (44%), Gaps = 21/334 (6%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFR++ PV KV ++G +I+ + +KV D S ++I++I+ +E P+ +
Sbjct: 253 VFRILCPVDKVECVVGESDGIIELLQNEIGVDVKVADHVAGSNEQIIVITSEEGPDDELF 312
Query: 139 PAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PA +A + + R V+ LP+ + + RLLVPS++ G+ SL ++
Sbjct: 313 PAQEALLHIQTRIVNLLPDKE--------NVITTRLLVPSSEIGCFEGRDCSL-SEMRRL 363
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKT 257
+GA+++++ ++ P +++ + ++E+ GE AL V LR +L + F K
Sbjct: 364 TGANIQIVPREQLPAFISGTDELLEIVGEIKAARDALVEVTSRLRSYLYRE----FFPKD 419
Query: 258 Y-NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGIS 316
SIS +E + + A S T + + +P +S +G
Sbjct: 420 MPPPSISAPGSLEASSPNNITPAREGHTASDPPTTNYQNVQAIASVQPSKDSGG--TGGE 477
Query: 317 IYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAII 376
Q+ + S L R +VT+ T + IP +I + I SGA +
Sbjct: 478 TVKQNETV----PSVLNRIPVTLVTRSTLEVVIPEHAVPKLITRSKNKLAQISEWSGANV 533
Query: 377 TVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
T+ E R ++I GT Q + AQ L+Q ++
Sbjct: 534 TLLEDRLEATGKIIQISGTPEQTEKAQSLLQGFI 567
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG--KEEPEAPV 137
+R++ +K G +IG+ G +IK + T A I V + +RI+ IS + +PE +
Sbjct: 6 YRILCHDVKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 65
Query: 138 ---SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
SPA +A + R+ S A F + ++V L+GK G +I+ +
Sbjct: 66 PQFSPAQEALFMIHDRI----------LESDAGFGN-GMVVSRMHVGCLLGKGGKIIEQM 114
Query: 195 QENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
+ + +R+L D P V+ E IV++ G+ V A+ + LR+
Sbjct: 115 RIETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNAIANISSRLRE 164
>gi|327263852|ref|XP_003216731.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Anolis
carolinensis]
Length = 360
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ ++ AS ++RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|403260495|ref|XP_003922705.1| PREDICTED: poly(rC)-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 302
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|417410101|gb|JAA51528.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 365
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 25 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 74
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 75 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 132
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 133 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 172
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 24 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 76
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 77 IFKAFAMIIDKL 88
>gi|213511793|ref|NP_001133381.1| poly(rC)-binding protein 2 [Salmo salar]
gi|209152662|gb|ACI33123.1| PolyrC-binding protein 2 [Salmo salar]
Length = 327
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 152/338 (44%), Gaps = 39/338 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTTA 67
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + +++ E D+ + + + S +R++VP++Q +LIGK G IK I
Sbjct: 68 IFKAFSMIIEKL----EEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + +A + Q AI P + S+ PQL ++L+
Sbjct: 180 PKPSGSPV-------IFAGGQAYAVQGQHAIP---QPDSSSASI----SPQLTKLHQLA- 224
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
Q P + + M IP IIG G+ I IR+ SGA
Sbjct: 225 ---MQQSPFPMGPNNPGFQGGMDASAQTSSHEMTIPNDLIGCIIGRQGSKINEIRQMSGA 281
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412
I + + V I G+++ + LA+ LI +++
Sbjct: 282 QIKIANPVEGSADRQVTITGSAASISLAEYLINARLSS 319
>gi|198433420|ref|XP_002121389.1| PREDICTED: similar to neuro-oncological ventral antigen 1 [Ciona
intestinalis]
Length = 543
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 12/171 (7%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKE 131
PG + ++++P G++IG+ G++I + +D+ A IK+ P DR+VLI G
Sbjct: 44 PGQLILKVLIPGYAAGAVIGKGGQIIVQLQKDSGAIIKLSKAKDFYPGTQDRVVLIQGTA 103
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
E M + ++V P A G V+++VP+T A +IGK G+ I
Sbjct: 104 EG------LMKVQNTIIEKVYEFPVPKDLAAIIGDRPKQVKIIVPNTTAGLVIGKAGATI 157
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
K+I E SG+ V++ + P V ER++ ++GE +++ A ++ ++
Sbjct: 158 KTIMEESGSKVQL---SQKPDGVNVQERVITIKGEKHQLMTASNIIIDKIK 205
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 156 ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVT 215
EN V A +++L+P A +IGK G +I +Q++SGA +++ A + FY
Sbjct: 34 ENGVTFSAPPPGQLILKVLIPGYAAGAVIGKGGQIIVQLQKDSGAIIKLSKAKD--FYPG 91
Query: 216 EDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
+R+V +QG A ++K ++ + +F V
Sbjct: 92 TQDRVVLIQGTAEGLMKVQNTIIEKVYEFPV 122
>gi|410355313|gb|JAA44260.1| poly(rC) binding protein 1 [Pan troglodytes]
Length = 356
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 67
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 68 IFKAFAMIIDKL 79
>gi|444021|emb|CAA82631.1| sub2.3 [Homo sapiens]
Length = 299
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|74141926|dbj|BAE41029.1| unnamed protein product [Mus musculus]
Length = 278
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|218192926|gb|EEC75353.1| hypothetical protein OsI_11789 [Oryza sativa Indica Group]
Length = 478
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS 164
+++ A IKV D + D I+ +S KE E PVSP ++AAV + R S D +++
Sbjct: 243 QESGAFIKV-DSSNTEDDCIITVSAKEFFEDPVSPTINAAVHLQPRCS----EKTDPESA 297
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
++ + RLLV +++ LIGK GS+I I+ S A++R+LS + P EDE +V++
Sbjct: 298 IPSY-TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAAEDEEMVQIS 356
Query: 225 GEAAKVLKALEAVVGHLR-KFLVDQGVLPLF 254
G+ V AL + L+ F +G L F
Sbjct: 357 GDLDVVRHALLQITTRLKANFFEREGALSGF 387
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 106 DTRARIKVLDGPVSSPDRIVLI--SGKE-----EPEAPVSPAMDAAVRVFKRVSGLPEND 158
DT+A+I++ + +R++ I S +E + E V PA DA RV +++S ++D
Sbjct: 4 DTQAKIRIGESVSGCDERVITIFSSSRETNTLVDAEDKVCPAQDALFRVHEKLS--IDDD 61
Query: 159 VDAKAS--GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
+ + S G A +VRLLVPS Q +IGK G +I+ I+ ++GA +RVLS + P
Sbjct: 62 IGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNENLPACAIS 121
Query: 217 DERIVEMQGEAAKVLKALEAVVGHLR 242
+ ++++ G++ V KAL V L
Sbjct: 122 GDELLQISGDSTVVRKALLQVSSRLH 147
>gi|327263854|ref|XP_003216732.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Anolis
carolinensis]
Length = 331
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 153/357 (42%), Gaps = 57/357 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ ++ AS ++RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV---------GHLRKFL 245
+E++GA V+V + D P ER + + G +++ ++ + G +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLF--LERE 303
P+ A Q + D + LH Q A+ + P + + F +E
Sbjct: 180 PKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMSHGNTGFSGVESS 236
Query: 304 PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGT 363
E Y G D + T + + IP IIG G
Sbjct: 237 SPDEKGYW------AGLDASAQT----------------TSHELTIPNDLIGCIIGRQGA 274
Query: 364 SIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
I IR+ SGA I + + V I G+++ + LAQ LI +++ + SS
Sbjct: 275 KINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 331
>gi|440907813|gb|ELR57910.1| Poly(rC)-binding protein 1 [Bos grunniens mutus]
Length = 356
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 67
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 68 IFKAFAMIIDKL 79
>gi|351712813|gb|EHB15732.1| Poly(rC)-binding protein 1 [Heterocephalus glaber]
Length = 355
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 15 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 64
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 65 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 122
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 123 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 162
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 14 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 66
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 67 IFKAFAMIIDKL 78
>gi|6754994|ref|NP_035995.1| poly(rC)-binding protein 1 [Mus musculus]
gi|62751650|ref|NP_001015565.1| poly(rC)-binding protein 1 [Bos taurus]
gi|126723096|ref|NP_001075593.1| poly(rC)-binding protein 1 [Oryctolagus cuniculus]
gi|222352151|ref|NP_006187.2| poly(rC)-binding protein 1 [Homo sapiens]
gi|379642963|ref|NP_001243850.1| poly(rC)-binding protein 1 [Equus caballus]
gi|114577924|ref|XP_515530.2| PREDICTED: poly(rC)-binding protein 1 isoform 3 [Pan troglodytes]
gi|296223628|ref|XP_002757702.1| PREDICTED: poly(rC)-binding protein 1-like [Callithrix jacchus]
gi|297667414|ref|XP_002811975.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Pongo abelii]
gi|301758216|ref|XP_002914950.1| PREDICTED: poly(rC)-binding protein 1-like [Ailuropoda melanoleuca]
gi|332226765|ref|XP_003262561.1| PREDICTED: poly(rC)-binding protein 1 [Nomascus leucogenys]
gi|348566575|ref|XP_003469077.1| PREDICTED: poly(rC)-binding protein 1-like [Cavia porcellus]
gi|354491739|ref|XP_003508012.1| PREDICTED: poly(rC)-binding protein 1-like [Cricetulus griseus]
gi|395731716|ref|XP_003775951.1| PREDICTED: poly(rC)-binding protein 1 isoform 2 [Pongo abelii]
gi|395841306|ref|XP_003793486.1| PREDICTED: poly(rC)-binding protein 1 [Otolemur garnettii]
gi|402891162|ref|XP_003908824.1| PREDICTED: poly(rC)-binding protein 1 [Papio anubis]
gi|410954989|ref|XP_003984141.1| PREDICTED: poly(rC)-binding protein 1 [Felis catus]
gi|426223390|ref|XP_004005858.1| PREDICTED: poly(rC)-binding protein 1 [Ovis aries]
gi|426335835|ref|XP_004029412.1| PREDICTED: poly(rC)-binding protein 1 [Gorilla gorilla gorilla]
gi|12230408|sp|O19048.1|PCBP1_RABIT RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1
gi|42559420|sp|P60335.1|PCBP1_MOUSE RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1
gi|42560548|sp|Q15365.2|PCBP1_HUMAN RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1; AltName: Full=Nucleic acid-binding
protein SUB2.3
gi|75040221|sp|Q5E9A3.1|PCBP1_BOVIN RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1
gi|2134737|pir||S58529 alpha-complex protein 1 - human
gi|5805273|gb|AAD51920.1|AF139894_1 RNA-binding protein alpha-CP1 [Mus musculus]
gi|5805275|gb|AAD51921.1|AF139895_1 RNA-binding protein alpha-CP1 [Mus musculus]
gi|1215671|gb|AAA91317.1| alpha-CP1 [Homo sapiens]
gi|2644966|emb|CAA05814.1| hnRNP-E1 protein [Oryctolagus cuniculus]
gi|13435897|gb|AAH04793.1| Poly(rC) binding protein 1 [Mus musculus]
gi|24980783|gb|AAH39742.1| Poly(rC) binding protein 1 [Homo sapiens]
gi|47124405|gb|AAH69915.1| Poly(rC) binding protein 1 [Mus musculus]
gi|59858399|gb|AAX09034.1| poly(rC) binding protein 1 [Bos taurus]
gi|62702265|gb|AAX93191.1| unknown [Homo sapiens]
gi|119620240|gb|EAW99834.1| poly(rC) binding protein 1 [Homo sapiens]
gi|148666767|gb|EDK99183.1| mCG130511 [Mus musculus]
gi|189054893|dbj|BAG36897.1| unnamed protein product [Homo sapiens]
gi|208968661|dbj|BAG74169.1| poly(rC) binding protein 1 [synthetic construct]
gi|281346699|gb|EFB22283.1| hypothetical protein PANDA_002891 [Ailuropoda melanoleuca]
gi|296482414|tpg|DAA24529.1| TPA: poly(rC)-binding protein 1 [Bos taurus]
gi|312151908|gb|ADQ32466.1| poly(rC) binding protein 1 [synthetic construct]
gi|344250809|gb|EGW06913.1| Poly(rC)-binding protein 1 [Cricetulus griseus]
gi|355565760|gb|EHH22189.1| hypothetical protein EGK_05412 [Macaca mulatta]
gi|355751386|gb|EHH55641.1| hypothetical protein EGM_04885 [Macaca fascicularis]
gi|380813262|gb|AFE78505.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|380813264|gb|AFE78506.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|383418769|gb|AFH32598.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|384940310|gb|AFI33760.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|384947378|gb|AFI37294.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|410262902|gb|JAA19417.1| poly(rC) binding protein 1 [Pan troglodytes]
gi|431912608|gb|ELK14626.1| Poly(rC)-binding protein 1 [Pteropus alecto]
gi|444723406|gb|ELW64063.1| Poly(rC)-binding protein 1 [Tupaia chinensis]
Length = 356
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 67
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 68 IFKAFAMIIDKL 79
>gi|57093423|ref|XP_538537.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Canis lupus
familiaris]
Length = 356
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 67
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 68 IFKAFAMIIDKL 79
>gi|410227970|gb|JAA11204.1| poly(rC) binding protein 1 [Pan troglodytes]
Length = 356
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 67
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 68 IFKAFAMIIDKL 79
>gi|351714348|gb|EHB17267.1| Poly(rC)-binding protein 1 [Heterocephalus glaber]
Length = 355
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 15 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 64
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 65 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 122
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 123 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 162
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 14 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 66
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 67 IFKAFAMIIDKL 78
>gi|225455340|ref|XP_002272224.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 661
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 151/334 (45%), Gaps = 21/334 (6%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VFR++ PV KV ++G +I+ + +KV D S ++I++I+ +E P+ +
Sbjct: 339 VFRILCPVDKVECVVGESDGIIELLQNEIGVDVKVADHVAGSNEQIIVITSEEGPDDELF 398
Query: 139 PAMDAAVRVFKR-VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PA +A + + R V+ LP+ + + RLLVPS++ G+ SL ++
Sbjct: 399 PAQEALLHIQTRIVNLLPDKE--------NVITTRLLVPSSEIGCFEGRDCSL-SEMRRL 449
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKT 257
+GA+++++ ++ P +++ + ++E+ GE AL V LR +L + F K
Sbjct: 450 TGANIQIVPREQLPAFISGTDELLEIVGEIKAARDALVEVTSRLRSYLYRE----FFPKD 505
Query: 258 Y-NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGIS 316
SIS +E + + A S T + + +P +S +G
Sbjct: 506 MPPPSISAPGSLEASSPNNITPAREGHTASDPPTTNYQNVQAIASVQPSKDSGG--TGGE 563
Query: 317 IYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAII 376
Q+ + ++ L R +VT+ T + IP +I + I SGA +
Sbjct: 564 TVKQNETVPSV----LNRIPVTLVTRSTLEVVIPEHAVPKLITRSKNKLAQISEWSGANV 619
Query: 377 TVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
T+ E R ++I GT Q + AQ L+Q ++
Sbjct: 620 TLLEDRLEATGKIIQISGTPEQTEKAQSLLQGFI 653
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG--KEEPEAPV 137
+R++ +K G +IG+ G +IK + T A I V + +RI+ IS + +PE +
Sbjct: 69 YRILCHDVKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 128
Query: 138 ---SPAMDAAVRVFKRVSGLPENDVDAKASGAAF---------------CSVRLLVPSTQ 179
SPA +A + R+ E+D + R++V
Sbjct: 129 PQFSPAQEALFMIHDRIL---ESDAGFGNGFGGNGDDDDDFGPRGGGNRVATRMVVSRMH 185
Query: 180 AINLIGKQGSLIKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKALEAVV 238
L+GK G +I+ ++ + +R+L D P V+ E IV++ G+ V A+ +
Sbjct: 186 VGCLLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNAIANIS 245
Query: 239 GHLRK 243
LR+
Sbjct: 246 SRLRE 250
>gi|363747261|ref|XP_003643959.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Gallus
gallus]
Length = 348
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
>gi|311252459|ref|XP_003125105.1| PREDICTED: poly(rC)-binding protein 1-like [Sus scrofa]
Length = 356
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 67
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 68 IFKAFAMIIDKL 79
>gi|460771|emb|CAA55016.1| hnRNP-E1 [Homo sapiens]
Length = 356
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 67
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 68 IFKAFAMIIDKL 79
>gi|363747265|ref|XP_003643961.1| PREDICTED: poly(rC)-binding protein 2-like isoform 3 [Gallus
gallus]
Length = 320
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 148/345 (42%), Gaps = 59/345 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV---------GHLRKFL 245
+E++GA V+V + D P ER + + G +++ ++ + G +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE-- 303
P+ A Q + D + LH Q A+ + P + + F E
Sbjct: 180 PKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMSHGNTGFSGIESS 236
Query: 304 -PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGG 362
P+++ + G D + T + + IP IIG G
Sbjct: 237 SPEVKGYW-------AGLDASAQT----------------TSHELTIPNDLIGCIIGRQG 273
Query: 363 TSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
I IR+ SGA I + + V I G+++ + LAQ LI
Sbjct: 274 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 318
>gi|384947380|gb|AFI37295.1| poly(rC)-binding protein 1 [Macaca mulatta]
Length = 358
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|417409319|gb|JAA51170.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 283
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 25 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 74
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 75 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 132
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 133 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 172
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 24 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 76
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 77 IFKAFAMIIDKL 88
>gi|363747263|ref|XP_003643960.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Gallus
gallus]
Length = 349
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
>gi|431921619|gb|ELK18971.1| Poly(rC)-binding protein 2 [Pteropus alecto]
Length = 446
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 150/350 (42%), Gaps = 61/350 (17%)
Query: 94 GRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSG 153
G+KGE +KK E++ ARI + +G + P+RI+ ++G +A + F +
Sbjct: 22 GKKGESVKKMREESGARINISEG--NCPERIITLAGPT----------NAIFKAFAMIID 69
Query: 154 LPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSAD 208
E D+ + + + S +RL+VP++Q +LIGK G IK I+E++GA V+V + D
Sbjct: 70 KLEEDISSSMTNSTAASKPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGD 128
Query: 209 EAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASI----SQ 264
P ER + + G +++ ++ + + + +P K ++ + Q
Sbjct: 129 MLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQ 185
Query: 265 ERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQ---- 320
+R T +D +S T S + P LE L +I GQ
Sbjct: 186 DR-YSTGSDSASFPHTTPS----------------MCLNPDLEGP-PLEAYTIQGQYAIP 227
Query: 321 DPALSTIRSSALGRASGPIVTQIT--------------QTMQIPISYAEDIIGVGGTSIE 366
P L+ + A+ ++ P+ T + IP IIG G I
Sbjct: 228 QPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKIN 287
Query: 367 NIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
IR+ SGA I + + V I G+++ + LAQ LI + N K S
Sbjct: 288 EIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLENAKPS 337
>gi|147817258|emb|CAN62067.1| hypothetical protein VITISV_030085 [Vitis vinifera]
Length = 288
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 36/181 (19%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-----SGKEEP 133
+FR++ P K G +IG+ G +I++ EDT A+I++ D + +R++LI K E
Sbjct: 101 LFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRIDDSVLGCDERVILIVADAVKSKREA 160
Query: 134 EA---------------------PV-------SPAMDAAVRVFKRVSGLPENDVDAKAS- 164
A PV SPA A VRVF+R+ + E + +
Sbjct: 161 SAICGAEANDGEESANLRNSSPNPVAVDDDESSPAQQALVRVFERILKVDEEREEKEKKE 220
Query: 165 --GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
G RLL PS Q ++G+ G +++ I++ SGA +RVL D P + + +++
Sbjct: 221 DLGNVAVCCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACASPGDELIQ 280
Query: 223 M 223
+
Sbjct: 281 V 281
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 7/79 (8%)
Query: 163 ASGAAFCSV--RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERI 220
A+GAA V R+L P+T+ +IGK G++I+ +E++GA +R+ D++ + DER+
Sbjct: 92 AAGAAKPQVLFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRI---DDS--VLGCDERV 146
Query: 221 VEMQGEAAKVLKALEAVVG 239
+ + +A K + A+ G
Sbjct: 147 ILIVADAVKSKREASAICG 165
>gi|344266065|ref|XP_003405101.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Loxodonta
africana]
Length = 293
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 148/346 (42%), Gaps = 73/346 (21%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + QG
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLEAYTIQG----- 174
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
+I Q D + LH Q A+ + P T + F
Sbjct: 175 ----QYAIPQ-------PDLTKLH---QLAMQQSHFPMTHGNTGFSA------------- 207
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
G D + T + + IP IIG G I IR+ SGA
Sbjct: 208 ----GLDASAQT----------------TSHELTIPNDLIGCIIGRQGAKINEIRQMSGA 247
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
I + + V I G+++ + LAQ LI +++ + SS
Sbjct: 248 QIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 293
>gi|85838458|gb|ABC86135.1| nova [Paracentrotus lividus]
Length = 553
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 16/172 (9%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEA 135
+ +M++P GSIIG+ G+ I + DT +K+ P +R+ L++G
Sbjct: 75 ILKMLIPSTAAGSIIGKGGQTIAQLQRDTGTNVKLSKANDFYPGTQERVALLTG------ 128
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKA----SGAAFCSVRLLVPSTQAINLIGKQGSLI 191
PV + AV V +++ P+ V A A S V+++VP++ A +IGK G++I
Sbjct: 129 PVESLNNVAVFVLEKIKESPQLGVKAGAETITSPERARQVKIVVPNSTAGLIIGKGGAMI 188
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
KSI E SG+ V++ + +T ER++ + GE KA+ +V +++
Sbjct: 189 KSIMEQSGSRVQISQKSDG---ITLSERVITISGEPENNRKAMSFIVNKIQE 237
>gi|332019831|gb|EGI60292.1| Poly(rC)-binding protein 3 [Acromyrmex echinatior]
Length = 566
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 20/167 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G P +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG------PTNS 71
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF--------CSVRLLVPSTQAINLIGKQGSLI 191
A + K+ D SGA ++RL+VP++Q +LIGK GS I
Sbjct: 72 IFKAFTLICKKFEEWCSQFHDVPGSGAGGGGGVSRPPITLRLIVPASQCGSLIGKGGSKI 131
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
K I+E +GAS++V S ER V + G + + + + +
Sbjct: 132 KEIREVTGASIQVASE----MLPNSTERAVTISGTSEAITQCIYHIC 174
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 338 PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV---QESRGLPDEITVEIKG 394
P T M +P IIG GGT I IR+ SGA+I + +E G + T+ I G
Sbjct: 366 PAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITG 425
Query: 395 TSSQVQLAQQLIQ 407
V LAQ LI
Sbjct: 426 NPDAVALAQYLIN 438
>gi|307199010|gb|EFN79734.1| Poly(rC)-binding protein 3 [Harpegnathos saltator]
Length = 469
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 20/167 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G P +
Sbjct: 17 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG------PTNS 68
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF--------CSVRLLVPSTQAINLIGKQGSLI 191
A + K+ D + GA ++RL+VP++Q +LIGK GS I
Sbjct: 69 IFKAFTLICKKFEEWCSQFHDIQGGGAGGGGGVSRPPITLRLIVPASQCGSLIGKGGSKI 128
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
K I+E +GAS++V S ER V + G + + + + +
Sbjct: 129 KEIREVTGASIQVASE----MLPNSTERAVTISGTSEAITQCIYHIC 171
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 325 STIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV---QES 381
S +R+S R P T M +P IIG GGT I IR+ SGA+I + +E
Sbjct: 257 SQLRTSNTNRQQ-PAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEER 315
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
G + T+ I G V LAQ LI + K ++
Sbjct: 316 EGGATDRTITITGNPDAVALAQYLINMSVELQKANL 351
>gi|28317389|tpe|CAD29864.1| TPA: hnRNP-E2 b [Xenopus laevis]
Length = 319
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ ++ AS ++RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
>gi|344231257|gb|EGV63139.1| hypothetical protein CANTEDRAFT_93908 [Candida tenuis ATCC 10573]
Length = 562
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
FRM PV + G I+G+KGE I + ++ V D P+RIV + G E V+
Sbjct: 143 FRMYCPVKEAGLIVGKKGEQINHIRDRANVKVFVSDNIKGVPERIVTVRGSAE---NVAK 199
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A AVR L E + +A + ++ +RLL+P +IGKQGS + I+ENS
Sbjct: 200 AFGLAVRAI-----LDEPEDEASSINSSSYDLRLLIPHPLVGYIIGKQGSKFREIEENSA 254
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
A L A E P + D RI+ + G + + H+ + V Q VL
Sbjct: 255 AK---LKAAETPLPYSTD-RILLINGVSDAI---------HIAVYYVAQVVL 293
>gi|495128|emb|CAA53546.1| mCBP [Mus musculus]
Length = 331
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
>gi|225707620|gb|ACO09656.1| PolyrC-binding protein 2 [Osmerus mordax]
Length = 318
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 157/347 (45%), Gaps = 50/347 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTTA 67
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + +++ E D+ + + + S +R++VP++Q +LIGK G IK I
Sbjct: 68 IFKAFSMIIEKL----EEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGV-LPL 253
+E++GA V+V + D P ER + + G +++ ++ + + + +GV +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGTPQSIIECVKQICVVMLEQSPPKGVTIPY 179
Query: 254 FEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLS 313
K + + +A + Q AI T+ L +++ P
Sbjct: 180 RPKPSGSPV-------IFAGGQAYAVQGQHAIPQPDL--TKLHQLAMQQSP--------- 221
Query: 314 GISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
I + + + +SA + M IP IIG G+ I IR+ SG
Sbjct: 222 -FPIAPNNQGFTGMDASA---------QTSSHEMTIPNDLIGCIIGRQGSKINEIRQMSG 271
Query: 374 AIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
A I + + V I G+ + + LA+ LI +++ + ++
Sbjct: 272 AQIKIANPVDGSADRQVTITGSPASISLAEYLINARLSSEATGLAAN 318
>gi|255561850|ref|XP_002521934.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538859|gb|EEF40458.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 704
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 157/344 (45%), Gaps = 52/344 (15%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD-RIVLISGK 130
P + VFRM+ P KV ++G ++ D +KV D PVS D ++++IS +
Sbjct: 338 PFYGDDLVFRMLCPADKVNKVVGESDGILDLLQNDIGVDVKVSD-PVSGSDEQMIIISSE 396
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGS 189
E P+ + PA +A + + + L P++D +L+V S + L G+ GS
Sbjct: 397 EGPDDELFPAQEALLHIQTHIIDLVPDSD--------NIIKTKLIVSSGEIGCLEGRDGS 448
Query: 190 LIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
L ++ +GA +++L ++ P V+E + +V+++GE AL V LR +L +
Sbjct: 449 L-SEMERLTGAKIQILPREKLPACVSEADELVQIEGEIKAARDALVEVTSRLRSYLYKE- 506
Query: 250 VLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESR 309
F+K IS V + + + AA+ + I+ R
Sbjct: 507 ---YFQKDTPPPIS----VPSTGNALGMEAASPNNINP--------------------PR 539
Query: 310 YRLSGISIYGQDPALS--TIRSSALGRASGPIVTQITQT-MQIPISYAEDIIGVGGTSIE 366
SG G+ PA + T +++A + S I+ + + + S++ + + +++
Sbjct: 540 DGHSG----GEPPAANYHTPKTAAPIQLSKVIILWLCRIFFLLHFSFSRSYVQLLLSTV- 594
Query: 367 NIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
SGA +T+ E R E ++I GT QV+ AQ L+Q ++
Sbjct: 595 ----LSGANVTLLEDRPEVTEKIIQISGTPEQVERAQSLLQGFI 634
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG--KEEPEAPV 137
+R++ +K G +IG+ G +IK + T A I V + +RI+ IS + +PE +
Sbjct: 77 YRILCHDMKAGGVIGKSGTIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 136
Query: 138 ---SPAMDAAVRVFKRV------SGLPENDVDAKASGAAF------CSVRLLVPSTQAIN 182
SPA +A + R+ G+ + + + G + RL+V
Sbjct: 137 PAFSPAQEALFLIHDRILESDGQFGMSYANEEDEYGGRGINNSNNRVATRLVVSRMHVGC 196
Query: 183 LIGKQGSLIKSIQENSGASVRVLSADEA-PFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
L+GK G +I+ ++ + +R+L D P V+ E IV++ G+ V A+ + L
Sbjct: 197 LLGKGGKIIEQMRIETKTQIRILPRDHTLPRCVSMSEEIVQVVGDVNAVKNAIAIISSRL 256
Query: 242 RK 243
R+
Sbjct: 257 RE 258
>gi|322796009|gb|EFZ18633.1| hypothetical protein SINV_09712 [Solenopsis invicta]
Length = 440
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 20/167 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G P +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG------PTNS 71
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF--------CSVRLLVPSTQAINLIGKQGSLI 191
A + K+ D + GA ++RL+VP++Q +LIGK GS I
Sbjct: 72 IFKAFTLICKKFEEWCSQFHDIQGGGAGGGGGVSRPPITLRLIVPASQCGSLIGKGGSKI 131
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
K I+E +GAS++V S ER V + G + + + + +
Sbjct: 132 KEIREVTGASIQVASE----MLPNSTERAVTISGTSEAITQCIYHIC 174
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 325 STIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV---QES 381
S +R+S R P T M +P IIG GGT I IR+ SGA+I + +E
Sbjct: 354 SQLRTSNTNRQQ-PAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEER 412
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLIQ 407
G + T+ I G V LAQ LI
Sbjct: 413 EGGATDRTITITGNPDAVALAQYLIN 438
>gi|72084060|ref|XP_790705.1| PREDICTED: uncharacterized protein LOC585801 isoform 2
[Strongylocentrotus purpuratus]
Length = 557
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 72 PGWP---GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIV 125
PG P + +M++P GSIIG+ G+ I + DT +K+ P +R+
Sbjct: 68 PGGPIDDNKYMLKMLIPSTAAGSIIGKGGQTIAQLQRDTGTNVKLSKANDFYPGTQERVA 127
Query: 126 LISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKA----SGAAFCSVRLLVPSTQAI 181
L++G PV + AV + ++ P+ V A A S V+++VP++ A
Sbjct: 128 LLTG------PVESLNNVAVFILDKIKESPQLGVKAGAETITSPERARQVKIVVPNSTAG 181
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G++IKSI E SG+ V++ + +T ER++ + GE+ KA+ +V +
Sbjct: 182 LIIGKGGAMIKSIMEQSGSRVQISQKSDG---ITLSERVITISGESDNNRKAMSFIVNKI 238
Query: 242 RK 243
++
Sbjct: 239 QE 240
>gi|291402366|ref|XP_002717547.1| PREDICTED: poly(rC) binding protein 2-like [Oryctolagus cuniculus]
Length = 334
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 157/362 (43%), Gaps = 64/362 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKMR-EESGARINISEG--NCPERIITLAGPT-------- 64
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 65 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 122
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGVL 251
+E++GA V+V + D P ER + + G +++ ++ + + + L +GV
Sbjct: 123 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVT 178
Query: 252 ----------PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE 301
P+ A Q + D + LH Q A+ + P T + F
Sbjct: 179 IPYWPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLH---QLAMQQSHFPMTHGNTGFSG 235
Query: 302 RE---PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
E P+++ + G D + T + + IP II
Sbjct: 236 IESSSPEVKGYW-------AGLDASAQT----------------TSHELTIPNDLIGCII 272
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESIT 418
G G I IR+ SGA I + + V I G+++ + LAQ LI +++ +
Sbjct: 273 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMG 332
Query: 419 SS 420
SS
Sbjct: 333 SS 334
>gi|193083114|ref|NP_001122386.1| poly(rC)-binding protein 2 isoform g [Homo sapiens]
gi|73996231|ref|XP_857798.1| PREDICTED: poly(rC)-binding protein 2 isoform 15 [Canis lupus
familiaris]
gi|291389261|ref|XP_002711067.1| PREDICTED: poly(rC) binding protein 2-like isoform 4 [Oryctolagus
cuniculus]
gi|338726296|ref|XP_003365293.1| PREDICTED: poly(rC)-binding protein 2 [Equus caballus]
gi|426224374|ref|XP_004006346.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Ovis aries]
gi|119617117|gb|EAW96711.1| poly(rC) binding protein 2, isoform CRA_f [Homo sapiens]
Length = 318
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
>gi|444513545|gb|ELV10391.1| Poly(rC)-binding protein 4 [Tupaia chinensis]
Length = 399
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 27/178 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G+ ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGSNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
K I+E +GA V+V + D P ER V + G ++ + + + + QG
Sbjct: 125 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILEGFSVQG 178
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 109/284 (38%), Gaps = 49/284 (17%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++R+L+ + ++IGK+G +K I+E S A + + S P ERI + G A
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP------ERITTITGSTAA 71
Query: 230 VLKALEAVVGHLRKFLVDQGVLPLFEKTYNAS--------ISQERQVETWADKSSLH--- 278
V A+ + F +D+ + N S + Q + K+
Sbjct: 72 VFHAVSMIA-----FKLDEDLCAAPANGSNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 279 ----AATQSAISTEYTPSTRRESLFLEREPQ---LESR----YRLSGISIYGQDPALSTI 327
Q ++ + P++ ++ + P L R L G S+ GQ A++
Sbjct: 127 IRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILEGFSVQGQYGAVTPA 186
Query: 328 RSSALGRASGPIV--------------TQIT-QTMQIPISYAEDIIGVGGTSIENIRRTS 372
+ L + SG V TQ + Q +P +IG G+ I IR+ S
Sbjct: 187 EVTKLQQLSGHAVPFASPSVVPGLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMS 246
Query: 373 GAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
GA I + E V I G+ + LAQ LI + K +
Sbjct: 247 GAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKST 290
>gi|194384644|dbj|BAG59482.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 68 IFKAFAMIIDKL 79
>gi|169647179|gb|ACA61608.1| hypothetical protein AP1_E07.1 [Arabidopsis lyrata subsp. petraea]
Length = 532
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 44/205 (21%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDG-PVSSPDRIVLI----------- 127
FR++ P + G+IIG+ G +I+ T ++I+V+D PV S +R+VLI
Sbjct: 244 FRLLCPASRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKDDS 303
Query: 128 ------------------------SGKEEPEAPVSPAMDAAVRVFKR-VSGLPENDVDA- 161
SG ++ EAP S M A +RV +R V G VD
Sbjct: 304 NVFDSENPSSEEPKQEKGSECAGTSGGDDEEAPSSAQM-ALLRVLERIVFGDDAASVDGD 362
Query: 162 ---KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDE 218
K + C R++V Q L+ K G +I+ I+E+SGA VR+ S D+ P +
Sbjct: 363 GLDKGESESLC--RMIVRGNQVDFLMSKGGKMIQRIREDSGAIVRISSTDQIPPCAFPGD 420
Query: 219 RIVEMQGEAAKVLKALEAVVGHLRK 243
++++ G+ + V KAL + L++
Sbjct: 421 VVIQITGKFSSVKKALLLITNCLQE 445
>gi|448538474|ref|XP_003871504.1| Pbp2 RNA binding protein [Candida orthopsilosis Co 90-125]
gi|380355861|emb|CCG25380.1| Pbp2 RNA binding protein [Candida orthopsilosis]
Length = 579
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 32/268 (11%)
Query: 5 ETTDNGSINLPEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGPD--- 61
+ TDN + E D +P+ E+ T+ + E E + L + + P
Sbjct: 104 DQTDNHNNGEKEEDEEPKFNAVTDNNEENSKAKTVSQDEVEKFLEEAALLSKLSQPQPEP 163
Query: 62 -----------AAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRAR 110
+ V +K + P + FRM PV + +++G++G I E +
Sbjct: 164 QQHLEESAQATSNPVASQKDYESDPSYVSFRMYCPVKEASTVVGKQGAKINHLREKADVK 223
Query: 111 IKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
I++ D P+RI+ + G E V+ A VR + G PE DV A S + +
Sbjct: 224 IQISDNLRGVPERIITVRGTAE---NVARAFGLIVRT---ILGEPE-DVPANLSSQQY-N 275
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
++LLVP+ +IGKQG + I+ENS A L A E P + D R++ + G A +
Sbjct: 276 LKLLVPNAIIGYIIGKQGLKFREIEENSAAK---LKAAEQPLPHSTD-RVLSVLGVADAI 331
Query: 231 LKAL----EAVVGHLRKFLVDQGVLPLF 254
A+ E V+ H K ++ +G + L+
Sbjct: 332 HIAVYFIAEVVIEH--KDVLKKGRVILY 357
>gi|410900025|ref|XP_003963497.1| PREDICTED: poly(rC)-binding protein 2-like [Takifugu rubripes]
Length = 318
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 92/164 (56%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTTS 67
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
A + +++ E D+ ++ A+ ++RL+VP++Q +LIGK G IK I
Sbjct: 68 IFKAFSMIIEKL----EEDISTSMTNSTATSKPPVTIRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESAGAQVQV-AGDMLP---NSTERAITIAGTPQSIIECVKQIC 163
>gi|318054596|ref|NP_001188110.1| poly(rC)-binding protein 2 [Ictalurus punctatus]
gi|308322769|gb|ADO28522.1| poly(rc)-binding protein 2 [Ictalurus punctatus]
Length = 318
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 157/350 (44%), Gaps = 56/350 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTT- 66
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + F + E D+ + S + S +R++VP++Q +LIGK G IK I
Sbjct: 67 ---AIFKAFSMIIDKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGTPLSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + +A + Q AI +P L ++L+
Sbjct: 180 PKPSGSPV-------IFAGGQAYAVQGQHAIP----------------QPDLTKLHQLA- 215
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQT----MQIPISYAEDIIGVGGTSIENIRR 370
Q P + S+ G +G T TQT + IP IIG G I IR+
Sbjct: 216 ---MQQSPF--PLAPSSQGFTAGMDAT--TQTGSHELTIPNDLIGCIIGRQGAKINEIRQ 268
Query: 371 TSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
SGA I + ++ V I G+ + + LA+ LI +++ + ++
Sbjct: 269 MSGAQIKIANPVEGSNDRQVTITGSPASISLAEYLINARLSSEATGLATN 318
>gi|334350025|ref|XP_003342306.1| PREDICTED: poly(rC)-binding protein 2-like [Monodelphis domestica]
gi|444513888|gb|ELV10473.1| Poly(rC)-binding protein 2 [Tupaia chinensis]
Length = 307
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
>gi|147789387|emb|CAN73316.1| hypothetical protein VITISV_043333 [Vitis vinifera]
Length = 511
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGK-------E 131
++R + P K+GSII R +++K+ DT+ +I + D + +V I +
Sbjct: 293 IYRYLCPGKKIGSIIRRGWKIVKQQRVDTKPKISIGDTVSGCEEHVVTIYNFSIESNVFD 352
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
VSP + RV RV +D + + + C +IGK G +I
Sbjct: 353 NSNTFVSPTQNVLFRVHDRVISDEVHDENFEEASQIGC-------------VIGKGGQII 399
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+SI+ SGA +R+L D P V ++++++ GE + V+KAL + L
Sbjct: 400 QSIRSESGAQIRILKDDHLPSRVLSSDKLIQISGEPSLVMKALYQIASRLH 450
>gi|148689196|gb|EDL21143.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
gi|148689197|gb|EDL21144.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
gi|148689198|gb|EDL21145.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
Length = 244
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 23/152 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGS-------TA 70
Query: 140 AMDAAVRV--FKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKS 193
A+ AV + FK L E+ A A+G + ++RL++P++Q +LIGK G+ IK
Sbjct: 71 AVFHAVSMIAFK----LDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 194 IQENSGASVRVLSADEAPFYVTEDERIVEMQG 225
I+E +GA V+V + D P ER V + G
Sbjct: 127 IRETTGAQVQV-AGDLLP---NSTERAVTVSG 154
>gi|432857624|ref|XP_004068722.1| PREDICTED: poly(rC)-binding protein 2-like [Oryzias latipes]
Length = 317
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 154/346 (44%), Gaps = 49/346 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTTA 67
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + +++ E D+ + + + S +R++VP++Q +LIGK G IK I
Sbjct: 68 IFKAFSMIIEKL----EEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + +A + Q AI T+ L +++ P
Sbjct: 180 PKPSGSPV-------IFAGGQAYAVQGQHAIPQPDL--TKLHQLAMQQSP---------- 220
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
I + + I +SA + M IP IIG G I IR+ SGA
Sbjct: 221 FPIAPSNQGFTGIDASA---------QTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGA 271
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSS 420
I + + V I G+ + + LA+ LI +++ ++++
Sbjct: 272 QIKIANPVDGSTDRQVTITGSPASISLAEYLINARLSSEATGLSAN 317
>gi|363747267|ref|XP_423701.3| PREDICTED: poly(rC)-binding protein 2-like isoform 4 [Gallus
gallus]
Length = 307
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
>gi|149036630|gb|EDL91248.1| similar to Pol(yrC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)
(predicted) [Rattus norvegicus]
Length = 337
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 21/156 (13%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G +A +
Sbjct: 5 EVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT----------NAIFKA 52
Query: 148 FKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSIQENSGASV 202
F + E D+++ + + S +RL+VP+TQ +LIGK G IK I+E++GA V
Sbjct: 53 FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 112
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+V + D P ER + + G V + ++ +
Sbjct: 113 QV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 144
>gi|224098894|ref|XP_002311309.1| predicted protein [Populus trichocarpa]
gi|222851129|gb|EEE88676.1| predicted protein [Populus trichocarpa]
Length = 447
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-SGKEEPEAP- 136
V+R + P+ K+GSIIG+ GE+ K+ D+++ I++ + +R+V I S EE
Sbjct: 11 VYRYLCPLRKIGSIIGKGGEIAKQLRADSKSNIRISEAMPGYDERVVTIFSSSEETNLFE 70
Query: 137 -----VSPAMDAAVRVFKRVSGLPENDVDA-------KASGAAFCSVRLLVPSTQAINLI 184
V PA DA V RV N+ A + +VR+LVP+ Q +I
Sbjct: 71 DTGEYVCPAQDALFMVHDRVIAEDLNNAAAAEEEEEDRFGEVQQVTVRMLVPTDQIGCVI 130
Query: 185 GKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
GK G +I++I+ + A +R+ + P + ++ + GE + V KAL V L +
Sbjct: 131 GKGGQVIQNIRSETRAQIRITKDEHLPPLALSTDELLLIHGEPSVVRKALYQVATRLHE 189
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 7/176 (3%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R++ P+ +G +IG+ G +IK+ +++RA IKV D I+ IS KE E SP
Sbjct: 251 LRLVCPIANIGGVIGKGGGIIKQIRQESRASIKVDSSGAEGNDCIIFISAKEFFEDQ-SP 309
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
M+AA+R+ R S E K SG + + RLLV +Q L+GK G++I ++ +
Sbjct: 310 TMNAALRMQPRCSEKTE-----KESGDSVITTRLLVGRSQIGCLMGKGGAIISEMRNLTR 364
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ-GVLPLF 254
A++R++S D P ED+ +V++ G AL V+ L+ + + G L F
Sbjct: 365 ANIRIISEDNLPKVAGEDDEMVQITGSLEVASNALLQVILRLKANIFGRDGALTTF 420
>gi|41055221|ref|NP_957486.1| poly(rC)-binding protein 2 [Danio rerio]
gi|28279638|gb|AAH45508.1| Poly(rC) binding protein 2 [Danio rerio]
gi|37681899|gb|AAQ97827.1| poly(rC) binding protein 2 [Danio rerio]
gi|42744604|gb|AAH66603.1| Pcbp2 protein [Danio rerio]
Length = 318
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 91/164 (55%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTTA 67
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + +++ E D+ + S + S +R++VP++Q +LIGK G IK I
Sbjct: 68 IFKAFSMIIEKL----EEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGTPLSIIECVKQIC 163
>gi|390458234|ref|XP_003732080.1| PREDICTED: poly(rC)-binding protein 1-like [Callithrix jacchus]
Length = 349
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 88/164 (53%), Gaps = 18/164 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
++++GA V+V + D P + I M + +K + V+
Sbjct: 124 RKSTGAQVQV-AGDMLPNSTEQAITIAGMPQSVTECVKQICLVM 166
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|345486914|ref|XP_001607400.2| PREDICTED: poly(rC)-binding protein 3-like [Nasonia vitripennis]
Length = 476
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 21/168 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+I+ +VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G P +
Sbjct: 22 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTG------PTNS 73
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF---------CSVRLLVPSTQAINLIGKQGSL 190
A + K+ D + G A ++RL+VP++Q +LIGK GS
Sbjct: 74 IFKAFTLICKKFEEWCSQFHDIQGGGNAGGGGGVPRPPITLRLIVPASQCGSLIGKGGSK 133
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
IK I+E +GAS++V S ER V + G + + + + +
Sbjct: 134 IKEIREVTGASIQVASE----MLPNSTERAVTISGTSEAITQCIYHIC 177
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 325 STIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV---QES 381
S +R++ R P T M +P IIG GGT I IR+ SGA+I + +E
Sbjct: 263 SQLRTNNANRQQ-PAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEER 321
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
G P + T+ I G V LAQ LI + K ++
Sbjct: 322 EGGPTDRTITITGNPDSVALAQYLINMSVELQKANL 357
>gi|355709446|gb|AES03594.1| Poly rC-binding protein 1 [Mustela putorius furo]
Length = 209
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +K+ E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPT-------- 65
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+++ + + S +RL+VP+TQ +LIGK G IK I
Sbjct: 66 --NAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K I+E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPTNA 67
Query: 230 VLKALEAVVGHL 241
+ KA ++ L
Sbjct: 68 IFKAFAMIIDKL 79
>gi|348502908|ref|XP_003439009.1| PREDICTED: poly(rC)-binding protein 2-like [Oreochromis niloticus]
Length = 324
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 92/164 (56%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTTS 67
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
A + +++ E D+ ++ A+ ++RL+VP++Q +LIGK G IK I
Sbjct: 68 IFKAFSMIIEKL----EEDISTSMTNSTATSKPPVTMRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESAGAQVQV-AGDMLP---NSTERAITVAGTPQSIIECVKQIC 163
>gi|90081810|dbj|BAE90186.1| unnamed protein product [Macaca fascicularis]
Length = 300
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 141/316 (44%), Gaps = 38/316 (12%)
Query: 105 EDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV----- 159
E++ ARI + +G + P+RIV I+G DA + F ++ E D+
Sbjct: 3 EESGARINISEG--NCPERIVTITGP----------TDAIFKAFAMIAYKFEEDIINSMS 50
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDER 219
++ A+ ++RL+VP++Q +LIGK GS IK I+E++GA V+V + D P ER
Sbjct: 51 NSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP---NSTER 106
Query: 220 IVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHA 279
V + G +++ ++ + + + +P K + + +A +
Sbjct: 107 AVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPV-------IFAGGQAYTI 159
Query: 280 ATQSAISTEYTPSTRRESLFLEREP-----QLESRYRLSGISIYGQDPALSTIRSSALGR 334
Q AI + T+ L +++ P Q + + ++ + A + + S+
Sbjct: 160 QGQYAIP--HPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLD 217
Query: 335 ASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKG 394
AS P T + IP IIG GT I IR+ SGA I + + E + I G
Sbjct: 218 ASPPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITG 274
Query: 395 TSSQVQLAQQLIQEYM 410
T + + LAQ LI +
Sbjct: 275 TPANISLAQYLINARL 290
>gi|432866565|ref|XP_004070866.1| PREDICTED: poly(rC)-binding protein 2-like [Oryzias latipes]
Length = 318
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 91/160 (56%), Gaps = 13/160 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTTS 67
Query: 140 AMDAAVRVFKRVSGLPENDV-DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A + +++ N + ++ A+ ++RL+VP++Q +LIGK G IK I+E++
Sbjct: 68 IFKAFSMIIEKLEEDISNSMTNSTATSKPPVTMRLVVPASQCGSLIGKGGCKIKEIRESA 127
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
GA V+V + D P ER + + G +++ ++ +
Sbjct: 128 GAQVQV-AGDMLP---NSTERAITVAGTPQSIIECVKQIC 163
>gi|297806983|ref|XP_002871375.1| hypothetical protein ARALYDRAFT_325507 [Arabidopsis lyrata subsp.
lyrata]
gi|297317212|gb|EFH47634.1| hypothetical protein ARALYDRAFT_325507 [Arabidopsis lyrata subsp.
lyrata]
Length = 525
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 14/201 (6%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
V +++ ++G +IG I+ +T A I + + + + I+ E+P A S
Sbjct: 276 VLKILCSKERIGRVIGNGRATIRDLQSETGAFITLGSNRLDCDEGLFTITASEDPNAKNS 335
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCS---VRLLVPSTQAINLIGKQGSLIKSIQ 195
P+ A V VF S + EN AK + S RL+V S Q L+G++G + +IQ
Sbjct: 336 PSQRALVLVF---SKMYENTT-AKVLDSGLTSSITARLVVRSNQINCLMGEEGHIKSTIQ 391
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGV----- 250
+ +GA + VL+ ++ P V+E+ +IV++ G V +A+ V LR+ L++Q
Sbjct: 392 QRTGAFITVLNVEQNPKCVSENNQIVQISGAFPNVKEAINQVTSMLREDLINQSFQMGSH 451
Query: 251 LPLFEKTYNASISQERQVETW 271
P+ +N I E W
Sbjct: 452 FPV--NYFNPCIRPEDSFPNW 470
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 33/191 (17%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
G+ +FR++ V +VG +IG+ G +I++ E T ++I V P+ S R++ I +
Sbjct: 22 GYVLFRILGHVSQVGDVIGKDGRVIRQLKESTNSQIWVEKAPLDSLYRVITIIADVGSTS 81
Query: 136 PV------------------------SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
V S A A +RVF+ ++ + ++ S
Sbjct: 82 RVKLGVIVNNASNRKKEEVQEQEVEVSRAQGALIRVFE--------ALNVRFGTSSTVSS 133
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVL 231
RLL+ + + +IGK G L++ I++ +G +V + + P D+ +V+++G V
Sbjct: 134 RLLMEACHVVTVIGKGGELMEMIRKETGCNVEICQYN-LPSCADPDDVMVKIEGNVFAVK 192
Query: 232 KALEAVVGHLR 242
K L ++ L+
Sbjct: 193 KVLVSISSRLQ 203
>gi|317418810|emb|CBN80848.1| PolyrC-binding protein 2 [Dicentrarchus labrax]
Length = 306
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 147/332 (44%), Gaps = 49/332 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTTA 67
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + +++ E D+ + + + S +R++VP++Q +LIGK G IK I
Sbjct: 68 IFKAFSMIIEKL----EEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E++GA V+V + D P ER + + G +++ ++ + + + +P
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTIPYR 179
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
K + + +A + Q AI T+ L +++ P
Sbjct: 180 PKPSGSPV-------IFAGGQAYAVQGQHAIPQPDL--TKLHQLAMQQSP---------- 220
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
I + + I +SA + M IP IIG G I IR+ SGA
Sbjct: 221 FPIAPSNQGFTGIDASA---------QTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGA 271
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
I + + V I G+ + + LA+ LI
Sbjct: 272 QIKIANPVDGSTDRQVTITGSPASISLAEYLI 303
>gi|209156062|gb|ACI34263.1| PolyrC-binding protein 2 [Salmo salar]
Length = 318
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 91/164 (55%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTTA 67
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + +++ E D+ + + + S +R++VP++Q +LIGK G IK I
Sbjct: 68 IFKAFSMIIEKL----EEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGTPQSIIECVKQIC 163
>gi|348528761|ref|XP_003451884.1| PREDICTED: poly(rC)-binding protein 2-like [Oreochromis niloticus]
Length = 317
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 91/164 (55%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTTA 67
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A + +++ E D+ + + + S +R++VP++Q +LIGK G IK I
Sbjct: 68 IFKAFSMIIEKL----EEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGTPQSIIECVKQIC 163
>gi|449281891|gb|EMC88850.1| Poly(rC)-binding protein 3 [Columba livia]
Length = 330
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 144/344 (41%), Gaps = 49/344 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKT--CEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPV 137
R+++ +VGSIIG+ K + ARI + +G + P+RIV I+G
Sbjct: 16 IRLLMHGKEVGSIIGKVRMSFKSLPFSFQSGARINISEG--NCPERIVTITGPT------ 67
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIK 192
DA + F ++ E D+ S + S +RL+VP++Q +LIGK GS IK
Sbjct: 68 ----DAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIK 123
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLP 252
I+E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 124 EIRESTGAQVQV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIP 179
Query: 253 ----------LFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER 302
+F +I + + + LH T +TP + F
Sbjct: 180 YRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQ--QTPFTPLGQTTPAFPGE 237
Query: 303 EPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGG 362
+ L S ++ GQ L AS P T + IP IIG G
Sbjct: 238 KLPLHSSEEAQ--NLMGQSSGLD---------ASPPAS---THELTIPNDLIGCIIGRQG 283
Query: 363 TSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
T I IR+ SGA I + + E + I GT + + LAQ LI
Sbjct: 284 TKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 327
>gi|47214279|emb|CAG01336.1| unnamed protein product [Tetraodon nigroviridis]
Length = 408
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 153/373 (41%), Gaps = 68/373 (18%)
Query: 95 RKGELIKKTCEDTRARIKV-LDGPVSSPDRIVLISGKE--------EPEAP-----VSPA 140
+KGE +KK ED R+ L G + PD +L+S ++ E P ++
Sbjct: 57 QKGETVKKMREDVGGRVSTWLSGRLPLPDARLLLSFQQSGARINISEGNCPERIVTITGP 116
Query: 141 MDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
DA + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK ++
Sbjct: 117 TDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMR 176
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLP--- 252
E++GA V+V + D P ER V + G +++ ++ + + + +P
Sbjct: 177 ESTGAQVQV-AGDMLP---NSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRP 232
Query: 253 -------LFEKTYNASISQERQVETWADKSSLH------------AATQSAISTEYTPST 293
+F +I + + S LH T A Y P+
Sbjct: 233 KPASTPVIFSGGQAYTIQGQYAIPHPDQLSKLHQLAMQQPPFTPLGQTTPAFPGTYPPTW 292
Query: 294 RRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISY 353
R R PQL LS + + + T A +AS T + IP
Sbjct: 293 R------PRWPQL----LLSFVPADARSSSSVTAALDAGNQAS-------THELTIPNDL 335
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEY---- 409
IIG GT I IR+ SGA I + + E + I GT + + LAQ LI
Sbjct: 336 IGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINARFRDV 395
Query: 410 --MNNHKESITSS 420
M N S+T+S
Sbjct: 396 AAMWNDPSSMTTS 408
>gi|149018652|gb|EDL77293.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018654|gb|EDL77295.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018655|gb|EDL77296.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018656|gb|EDL77297.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018658|gb|EDL77299.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018659|gb|EDL77300.1| rCG25644, isoform CRA_a [Rattus norvegicus]
Length = 183
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 23/152 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGS-------TA 70
Query: 140 AMDAAVRV--FKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKS 193
A+ AV + FK L E+ A A+G + ++RL++P++Q +LIGK G+ IK
Sbjct: 71 AVFHAVSMIAFK----LDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 194 IQENSGASVRVLSADEAPFYVTEDERIVEMQG 225
I+E +GA V+V + D P ER V + G
Sbjct: 127 IRETTGAQVQV-AGDLLP---NSTERAVTVSG 154
>gi|355709455|gb|AES03597.1| poly binding protein 4 [Mustela putorius furo]
Length = 206
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 27/154 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 29 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 76
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 77 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 133
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQG 225
K I+E +GA V+V + D P ER V + G
Sbjct: 134 KEIRETTGAQVQV-AGDLLP---NSTERAVTVSG 163
>gi|119585581|gb|EAW65177.1| poly(rC) binding protein 4, isoform CRA_f [Homo sapiens]
Length = 244
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 19/150 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G A V
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST---AAVFH 74
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKSIQ 195
A+ ++ FK L E+ A A+G ++RL++P++Q +LIGK G+ IK I+
Sbjct: 75 AV--SMIAFK----LDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQG 225
E +GA V+V + D P ER V + G
Sbjct: 129 ETTGAQVQV-AGDLLP---NSTERAVTVSG 154
>gi|358055492|dbj|GAA98612.1| hypothetical protein E5Q_05299 [Mixia osmundae IAM 14324]
Length = 549
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 92/391 (23%), Positives = 156/391 (39%), Gaps = 70/391 (17%)
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP 136
H R ++ IIG+ G+ IK+ E ++ V + ++P+RI+ +SG
Sbjct: 187 HVTLRALIVTQDASIIIGKGGQSIKEIREKAGVKVLVSESIPNNPERILNVSG------- 239
Query: 137 VSPAMDAAVRVF----KRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
+D + F +R++ P DV + G+ ++R +VP+ + ++IGKQG+ IK
Sbjct: 240 ---LLDGVSKAFGLIVRRINDEPF-DVPS-VPGSRAVTIRFIVPNHRMGSIIGKQGAKIK 294
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLP 252
IQ+ SGA L A E+ ERI+ + G V A+ V + L +
Sbjct: 295 EIQDASGAR---LQATES-MLPGSTERILSISG----VADAIHIAVYYTGAILAEHSDRA 346
Query: 253 LFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQL-----E 307
+ Y + S +A Y P+ + P +
Sbjct: 347 VNNTPYRPGLPPTSYGPPPPRPGSGPSA-----GGYYPPAPPHHDPYRVAAPMVNPTGYH 401
Query: 308 SRYR---------------------LSGISIYGQDPALSTIRSSALGR-----ASGPIVT 341
YR + + G PA + +SA+ A+GP+
Sbjct: 402 DPYRGMGGPPAAMAPPQHGQAPQQHFAAPPVQGMPPAQAQATTSAMPFGPPPVATGPVGP 461
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR--GL-PD-EITVEIKGTSS 397
TQ + IP IIG GG I +R SGA I + E GL P+ E V + G +
Sbjct: 462 NQTQQVYIPNELVGPIIGKGGLKINELRNNSGAHIKIMEPSEGGLNPNGERLVNVSGQPA 521
Query: 398 QVQLAQQLIQEYMNNHKESITSSYGQIDTGY 428
+Q+A Q++ + + K + +++ GY
Sbjct: 522 NIQMAVQMLYQRLEQEKAN------KMNQGY 546
>gi|380792097|gb|AFE67924.1| poly(rC)-binding protein 2 isoform f, partial [Macaca mulatta]
Length = 197
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
>gi|380792087|gb|AFE67919.1| poly(rC)-binding protein 2 isoform g, partial [Macaca mulatta]
Length = 193
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 163
>gi|357463999|ref|XP_003602281.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355491329|gb|AES72532.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 646
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/387 (23%), Positives = 159/387 (41%), Gaps = 50/387 (12%)
Query: 38 TIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKG 97
T S N H + S S D A P + +FR++ PV +V I+G G
Sbjct: 298 TTNSRNNNHASISYSM-------DQGAAPVAHDEQPFYEDLIFRILCPVDRVDRIVGESG 350
Query: 98 ELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEN 157
+++ + +++ D S +++V+I+ +E P + PA +A + + + L +
Sbjct: 351 GILELLQDRVGVDVQISDRVGGSDEQMVIITSEEGPNDTMFPAQEALLHIQTHIVDLSD- 409
Query: 158 DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTED 217
+ + RL+VPS+ L GK SL I+ ++GASV++L +E P +
Sbjct: 410 ---------SIITTRLIVPSSDIECLDGKNASL-SEIERSTGASVQILPREELPPCIANT 459
Query: 218 ERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL---------PLFEKTYNASISQERQV 268
+ +V++ GE + V LR + V + +L PL ++S S
Sbjct: 460 DELVQIVGEIEAARNVILDVTAKLRSY-VYRDILQWDTVPPSAPLPSVEASSSNSMATVA 518
Query: 269 ETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIR 328
ET ++ + + S E ST E Q ES R D R
Sbjct: 519 ETATANQNMQSVAVALASKESGGST-------EMGKQKESDRR--------DDLPTGLNR 563
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEI 388
+ +L VT+ + IP ++ + + I SGA + + E R E
Sbjct: 564 TVSL-------VTRSILEVVIPEYAVPKLLAKSKSKLAQISELSGANVKLVEDRPDEKEK 616
Query: 389 TVEIKGTSSQVQLAQQLIQEYMNNHKE 415
++I GT Q + Q L+Q ++ + +E
Sbjct: 617 IIQISGTPEQAERGQSLLQGFILSTQE 643
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG--KEEPEAPV 137
+R++ L+ G +IG+ G +IK + T A I V + +RI+ IS + +P+ +
Sbjct: 65 YRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEISDTRRRDPDGRM 124
Query: 138 ---SPAMDAAVRVFKRVSGLPEND---------VDAKASGAAFCSVRLLVPSTQAINLIG 185
SPA +A + + +R L END + G S RL+V +L+G
Sbjct: 125 PQFSPAQEALLLIHER---LLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSLLG 181
Query: 186 KQGSLIKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
K G +I+ ++ + +R+L D P V+ E IV++ G+ V A + LR+
Sbjct: 182 KGGKIIEQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISSRLRE 240
>gi|354475601|ref|XP_003500016.1| PREDICTED: poly(rC)-binding protein 2-like [Cricetulus griseus]
Length = 325
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 75/125 (60%), Gaps = 9/125 (7%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+++ +VGSII +KGE +KK E++ AR + DG + P+RI+ ++G P +
Sbjct: 17 RLLMHGKEVGSIIAKKGESVKKMREESGARTSISDG--NCPERIITLAG------PTNAI 68
Query: 141 MDAAVRVFKRVS-GLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + ++ G+ + ++ A+ ++RL+VP++Q +LIGK G IK I+E++G
Sbjct: 69 FKAFAMIIDKLEEGISSSMTNSTAASRPPVALRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 200 ASVRV 204
A V+V
Sbjct: 129 AQVQV 133
>gi|395516948|ref|XP_003762645.1| PREDICTED: poly(rC)-binding protein 4 [Sarcophilus harrisii]
Length = 338
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 15/161 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RMI+ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMIMHGKEVGSIIGKKGETVKRIREQSCARITISEG--SCPERITTITGSTG------- 70
Query: 140 AMDAAVRV--FKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
A+ AV + FK L + + ++RL++P++Q +LIGK G+ IK I+E
Sbjct: 71 AVFHAVSMIAFKLDEDLCTGPPNGGSISKPPVTLRLVIPASQCGSLIGKAGTKIKEIRET 130
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+GA V+V + D P ER V + G ++ + +
Sbjct: 131 TGAQVQV-AGDLLP---NSTERAVTVSGVPDAIILCVRQIC 167
>gi|74007267|ref|XP_548937.2| PREDICTED: poly(rC)-binding protein 1-like [Canis lupus familiaris]
Length = 362
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE K+ +++ ARI + +G + P+RI+ ++G P +
Sbjct: 16 IRLLMHRKEVGSIIGKKGESPKRFRKESGARINISEG--NCPERIITLTG------PTNA 67
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
A V + ++ E D+++ + + S +RL+VP+ Q +LIGK G IK I
Sbjct: 68 IFKAFVMIIDKL----EEDINSSMTNSTAASRPPVTLRLVVPAYQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G V + ++ +
Sbjct: 124 RESTGAQVQV-AGDMLP---NSTERAITIAGVPQSVTECVKQIC 163
>gi|196049606|pdb|2JZX|A Chain A, Pcbp2 Kh1-Kh2 Domains
Length = 160
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 7 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---------- 54
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 55 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 114
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E++GA V+V + D P ER + + G +++ ++ +
Sbjct: 115 RESTGAQVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 154
>gi|344250764|gb|EGW06868.1| Poly(rC)-binding protein 2 [Cricetulus griseus]
Length = 306
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 9/118 (7%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+VGSII +KGE +KK E++ AR + DG + P+RI+ ++G P + A +
Sbjct: 5 EVGSIIAKKGESVKKMREESGARTSISDG--NCPERIITLAG------PTNAIFKAFAMI 56
Query: 148 FKRVS-GLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
++ G+ + ++ A+ ++RL+VP++Q +LIGK G IK I+E++GA V+V
Sbjct: 57 IDKLEEGISSSMTNSTAASRPPVALRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 114
>gi|355733298|gb|AES10985.1| poly binding protein 2 [Mustela putorius furo]
Length = 148
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 75/130 (57%), Gaps = 17/130 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 28 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---------- 75
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 76 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 135
Query: 195 QENSGASVRV 204
+E++GA V+V
Sbjct: 136 RESTGAQVQV 145
>gi|255551350|ref|XP_002516721.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223544094|gb|EEF45619.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 537
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
+K +DT A I V D S +R++ +S E P S +DA +++ + S E
Sbjct: 335 VKVVQQDTGASIHVEDASAESDERVIRVSASEALWNPRSQTIDAILQLQNKTSDFSEK-- 392
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDER 219
+ RLLVPS++ ++G+ G +I ++ + A +RV S DE P +EDE
Sbjct: 393 -------GTITTRLLVPSSKVGCILGQGGQVINEMRRRTQADIRVYSKDEKPKCASEDEE 445
Query: 220 IVEMQGEAAKVLKALEAVVGHLR 242
+V++ G+ AL + LR
Sbjct: 446 LVQISGKFGVAKDALAEIASRLR 468
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 29/188 (15%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI------- 127
P V+R++ P K+G +IG+ G +IK E+T+A+I V D S +R+++I
Sbjct: 42 PVDTVYRILCPSRKIGGVIGKGGGIIKGLREETQAKITVADPVPGSDERVIIIYSSPEKI 101
Query: 128 ------------SGKEEPEAPVSPAMDAAVRVFKRV------SGLPENDVDAKASGAAFC 169
+++ P A DA ++V R+ G+ +D + F
Sbjct: 102 SRNHNDHEDLTMENEQDIMEPYCAAQDALLKVHDRIVEEDLFGGMTSDDDNENG----FV 157
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
+ RLLVP+ L+GK+G +I+ ++ +GA++RVL AD P + +V++ +
Sbjct: 158 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADHLPTCAMSTDELVQISAKPDV 217
Query: 230 VLKALEAV 237
KAL V
Sbjct: 218 AKKALYEV 225
>gi|148222025|ref|NP_001090223.1| neuro-oncological ventral antigen 2 [Xenopus laevis]
gi|49256115|gb|AAH72959.1| Nova1 protein [Xenopus laevis]
Length = 413
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + +T A IK+ P +R+ L+ G E
Sbjct: 32 GELFLKVLIPSYAAGSIIGKGGQTIVQLQRETGATIKLSKSKDFYPGTTERVCLVQGSAE 91
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDV------DAKASGAAFCSVRLLVPSTQAINLIGK 186
V + VR + G P+ND+ + + +L+VP+T A +IGK
Sbjct: 92 ALLSVHNFIAEKVREVPQ--GAPKNDLGVLLPPQSTINAERAKQAKLIVPNTTAGLIIGK 149
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
G+ +++I E SGA V++ + P ER+V + GE ++V KA+ +++ R+
Sbjct: 150 GGATVRNIMEESGAWVQL---SQKPAGSNLHERVVTVSGEPSQVQKAIHSIIHKSRE 203
>gi|347968782|ref|XP_312014.5| AGAP002896-PA [Anopheles gambiae str. PEST]
gi|333467844|gb|EAA08028.5| AGAP002896-PA [Anopheles gambiae str. PEST]
Length = 537
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
F+ +VP + G+IIG+ GE I +D AR+K+ P +RI LISG E
Sbjct: 26 FKTLVPSVAAGAIIGKGGETIASLQKDAGARVKMSKAHDFYPGTTERICLISGTVEGILA 85
Query: 137 VSPAMDAAVR----VFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
V + +R + K ++ + DAK + V++LVP+T A +IGK G+ IK
Sbjct: 86 VLDFITDKIREKPDITKALT-----EADAKQAQERDKQVKILVPNTTAGMIIGKAGAYIK 140
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGE 226
I+E SG+ V++ + P +T ER + + GE
Sbjct: 141 QIKEESGSYVQI---SQKPKDLTLQERCITIIGE 171
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVL 231
+ LVPS A +IGK G I S+Q+++GA V++ A + FY ERI + G +L
Sbjct: 27 KTLVPSVAAGAIIGKGGETIASLQKDAGARVKMSKAHD--FYPGTTERICLISGTVEGIL 84
Query: 232 KALEAVVGHLRK 243
L+ + +R+
Sbjct: 85 AVLDFITDKIRE 96
>gi|297792661|ref|XP_002864215.1| hypothetical protein ARALYDRAFT_495374 [Arabidopsis lyrata subsp.
lyrata]
gi|297310050|gb|EFH40474.1| hypothetical protein ARALYDRAFT_495374 [Arabidopsis lyrata subsp.
lyrata]
Length = 652
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 157/341 (46%), Gaps = 31/341 (9%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVS 138
VF+++ P K+ ++G ++ + ++V D S ++I+ IS +E P+ P
Sbjct: 326 VFQILCPADKIVRVVGESQGILDLLQNEIGVDVRVSDPVTGSDEQIITISSEEAPDDPFF 385
Query: 139 PAMDAAVRVFKRV-SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
PA +A + + ++ LP+ D + RLLV S ++ L GK GS + I
Sbjct: 386 PAQEALLHIQTQIIDLLPDKD--------NLITTRLLVSSRDSVCLEGKAGS-VSEISRL 436
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK- 256
+G SV++L+ +E P + ++ ++++ G+ AL + LR + + L +K
Sbjct: 437 TGTSVQILAREEIPRCASINDVVIQITGDIRAARDALVELTLLLRSHMFKE----LSQKE 492
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE----PQLESRY-- 310
T AS S +E A + ++ + S E + +L L++ PQ + +
Sbjct: 493 TPPASTSTTGPLEGVAGVMEVASSNNTIQSREGLTGS---NLKLQQTSTILPQFKEGFGS 549
Query: 311 -RLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIR 369
+G S + ++ ++T R + P+VT+ T + +P + ++ + I
Sbjct: 550 VAKAGESEHREEVPVTT------SRMAVPLVTRSTLEVVLPEAVVPKLVTKSRNKLAQIS 603
Query: 370 RTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
SGA +T+ E R + + I GT Q + AQ L+Q ++
Sbjct: 604 EWSGASVTLVEDRPEETQNIIRISGTPEQAERAQSLLQGFI 644
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 18/193 (9%)
Query: 69 KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLIS 128
K P +R++ K G +IG+ G +IK + T A I V + +RI+ IS
Sbjct: 60 KSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDVERIIEIS 119
Query: 129 G--KEEPEAPV---SPAMDAAVRVFKRV----------SGLPENDVD--AKASGAAFCSV 171
+ +P+ + SPA +A V R+ PE + D G
Sbjct: 120 DNRRRDPDGRMPSFSPAQEALFNVHDRILESEPQFGYGGAQPEEEEDYGGVRPGGGRVVT 179
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSAD-EAPFYVTEDERIVEMQGEAAKV 230
RL+V L+GK G +I+ ++ + +R+L + P V+ E IV++ GE + V
Sbjct: 180 RLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELSAV 239
Query: 231 LKALEAVVGHLRK 243
AL V LR+
Sbjct: 240 KNALLIVSSRLRE 252
>gi|193848519|gb|ACF22709.1| hypothetical protein-2 [Brachypodium distachyon]
Length = 429
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
FR++ V G +IG+KG +IK +T A I V + +R++ IS E P S
Sbjct: 283 FRLLCHVNLAGGLIGKKGMIIKGFETETGASIDVGNPFSGCMERVITISALESP-GKHSK 341
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + +F R+ + N + K CS R+LVP +Q +L+G G++IK + +++G
Sbjct: 342 VQSAILCIFDRMEEVERNLMFGKPE----CSARVLVPKSQFSSLVGLGGAIIKEMVKSTG 397
Query: 200 ASVRVLSADEAPFYVTEDERIVE 222
A + +L + P + ER+++
Sbjct: 398 ARIEILDEMDVPACASNCERVLQ 420
>gi|68475799|ref|XP_718106.1| hypothetical protein CaO19.5771 [Candida albicans SC5314]
gi|68475932|ref|XP_718039.1| hypothetical protein CaO19.13193 [Candida albicans SC5314]
gi|46439785|gb|EAK99099.1| hypothetical protein CaO19.13193 [Candida albicans SC5314]
gi|46439861|gb|EAK99174.1| hypothetical protein CaO19.5771 [Candida albicans SC5314]
gi|238882982|gb|EEQ46620.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 529
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 48 TESDSALPQSTGPDAAAVP-EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCED 106
+ESD A Q+TG +++ P + P RM PV + +I+GRKGE I E
Sbjct: 129 SESDHADDQNTGSSSSSKPVSNHRDRDDPTFIQLRMYCPVKEASTIVGRKGETINHLREK 188
Query: 107 TRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA 166
RI V + P+RIV + G P V+ A RV L E + + + +
Sbjct: 189 ANVRITVSENLKGVPERIVAVKG---PAENVARAFGLITRVI-----LEEPEDEPASINS 240
Query: 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG 225
+++LL+P +IGKQG + I+ENS A ++ +A+ A Y T +R++ + G
Sbjct: 241 QQYNLKLLIPHPMIGFIIGKQGLKFREIEENSAAKLK--AAENALPYST--DRVLSVMG 295
>gi|294655167|ref|XP_457273.2| DEHA2B07238p [Debaryomyces hansenii CBS767]
gi|199429743|emb|CAG85274.2| DEHA2B07238p [Debaryomyces hansenii CBS767]
Length = 486
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 18 DPQPETATT----ESPTTESEAPPTIGSENTE--HTTESDSALP----QSTGPDAAAVP- 66
D Q E A T + TE PT ++ TE H +D A ST DA++ P
Sbjct: 38 DKQQEVAHTAPVISNGITEESTTPTEDNQETEESHKAPNDEAEAFTDDASTTTDASSKPV 97
Query: 67 -EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
++ P + +FRM PV + +++G+KGE I + RI V + + P+RIV
Sbjct: 98 SNHREKERDPTYVMFRMYCPVKEASTVVGKKGEKINHIRDKANVRINVSENLKNVPERIV 157
Query: 126 LISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIG 185
+ G P V+ A R L E + + + + +++LL+P +IG
Sbjct: 158 SVRG---PAENVARAFGLITRTI-----LEEPEDEPASMLSRQYNLKLLIPHPMVGYIIG 209
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG 225
KQG + I+ENS A L A E P + D RI+ + G
Sbjct: 210 KQGVKFREIEENSAAK---LKAAEQPLPYSTD-RILSITG 245
>gi|321455064|gb|EFX66209.1| hypothetical protein DAPPUDRAFT_332423 [Daphnia pulex]
Length = 384
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 150/368 (40%), Gaps = 47/368 (12%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
G R++V GSIIG+ G I K + A I + D P P+RI+ I G
Sbjct: 31 GDTELRLLVYSKVAGSIIGKGGSNISKLRTENHATILLPDCP--GPERILTIQGN----- 83
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV-----RLLVPSTQAINLIGKQGSL 190
+DA + V + V LP + +K G V RLLV +Q +IG+ G+
Sbjct: 84 -----LDAVINVLQNV--LPSLEEVSKIRGERTGRVGDSDARLLVHQSQIGCIIGRGGAK 136
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGV 250
+K ++E++G + V S +RIV++ G+ + + ++ ++ +++ V +
Sbjct: 137 VKELRESTGTRITVYSV----CCPRSTDRIVQILGKPSDCGECIKQIIALVKESQVKGPI 192
Query: 251 LPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTR---RESLF--LERE-- 303
Y+ S +QE A R RE L R+
Sbjct: 193 DQYNPYNYDESFAQEYGGYGEGGVLVGMGAGGGGGGMRNPGGPRGPERELKIPTLVRDVP 252
Query: 304 -PQLESRYRLSGISIYGQD---PALSTIRSSALGRASGPI------------VTQITQTM 347
P R+R Y +D P+L + G G T+ TQ +
Sbjct: 253 RPLSPPRHRGYRAGSYERDLPPPSLMGVGQPVRGGPGGMYHDERIFREDDRGHTETTQ-V 311
Query: 348 QIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
IP A IIG GG I IR SGA IT+ E R E + I G+S Q+ AQ L+Q
Sbjct: 312 SIPKDLAGAIIGKGGARIRKIRGDSGASITIDEPRPGSTERIITISGSSHQIWKAQYLLQ 371
Query: 408 EYMNNHKE 415
+ + + +
Sbjct: 372 QSVRENSQ 379
>gi|326470883|gb|EGD94892.1| KH domain RNA-binding protein [Trichophyton tonsurans CBS 112818]
gi|326478447|gb|EGE02457.1| KH domain RNA-binding protein [Trichophyton equinum CBS 127.97]
Length = 367
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 138/326 (42%), Gaps = 42/326 (12%)
Query: 60 PDAAAVPE-EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV 118
P+A A P+ E+++ R IV + G IIG+ G+ + ++T + V
Sbjct: 31 PEAEATPKTEEEYA--QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQ 88
Query: 119 SSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPST 178
DR++ ++G P S A + + G P+ + SVRLL+
Sbjct: 89 GVHDRVLTVTG---PLQGTSKAYSIVAKSL--LEGAPQMGMGGVVQNNGTHSVRLLISHN 143
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
Q +IG+QG IK IQ+ SG VR+++ E ERIVE+QG + +E +
Sbjct: 144 QMGTIIGRQGLKIKYIQDASG--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAI 195
Query: 239 GHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESL 298
+ K L+D YN ++ + SS + + +T Y S+R
Sbjct: 196 WEIGKCLIDDWQRGTGTVLYNPAVRA-------SVGSSSGQGSVTGTATSYGGSSR---- 244
Query: 299 FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASG-PIVTQI-----TQTMQIPIS 352
S R + + P+ + R + G P+VT+ TQ + IP
Sbjct: 245 ---------SYNRTGNGADFSDHPSSYSRRGNNDNPNRGIPLVTEDGEEVQTQNISIPSD 295
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITV 378
IIG GGT I IRR+SGA I++
Sbjct: 296 MVGCIIGRGGTKISEIRRSSGARISI 321
>gi|358335626|dbj|GAA29562.2| RNA-binding protein Nova [Clonorchis sinensis]
Length = 673
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 25/177 (14%)
Query: 74 WPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGK 130
+ G+ F+++VP + G+IIG+ GE I T A++K+ P +R+ LI G
Sbjct: 24 YEGNVHFKILVPSIAAGAIIGKGGEAITDIQNKTSAKVKMSKANDFYPGTTERVCLIVG- 82
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGL----PENDVDAKASGAAFCS-----VRLLVPSTQAI 181
+D+ +RVF+ +S PE+ + + G + V++LVP++ A
Sbjct: 83 ---------TIDSILRVFQYISEKIYEKPESILRSTNKGGRMPAERHKQVKILVPNSTAG 133
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK GS IK ++E++G ++V + + ER V + GE + +A++ ++
Sbjct: 134 IIIGKGGSFIKEVKESTGVFIQVSQKSKE---LNLAERCVTVAGELPQTFEAVKQLL 187
>gi|413944062|gb|AFW76711.1| hypothetical protein ZEAMMB73_249479 [Zea mays]
Length = 426
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 121/297 (40%), Gaps = 43/297 (14%)
Query: 127 ISGKEEPEAPVSPAMDAAVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIG 185
+ + P+ + PA +A + + + L P+ D + RLLVP+++ G
Sbjct: 150 VDSRRGPDHELFPAQEAVLHIQTHIVDLGPDMD--------NIITTRLLVPASEIACFDG 201
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
++GSL IQ + A+V++L ++ P E + ++++ GE AL V LR FL
Sbjct: 202 REGSL-SDIQRQTSANVQILPREDLPSCALESDELIQIVGEIKAARNALIQVTTKLRSFL 260
Query: 246 VDQGVLPLFEKTYN--ASIS----------QERQVETWADKSSLHAATQSAISTEYTPST 293
+ P+ N +IS Q + A H A+Q A S S
Sbjct: 261 YREMPDPIQVGNINLHGAISPVAGSPRGPYQGNDIPMGA----YHQASQLATSWHSKDSG 316
Query: 294 RRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISY 353
S E+ + IR SA R + P+VT+ T + IP S
Sbjct: 317 GSASGSFEQGSNIN-----------------DDIRQSATKRFAVPLVTRSTLEIVIPNSA 359
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+ G+ + I SGA +T+ E R + V I GT Q A+ L+Q ++
Sbjct: 360 VASLTMRAGSKLAQISEISGAAVTLAEDRSDILQKVVRISGTPEQASKAENLLQGFI 416
>gi|321468687|gb|EFX79671.1| hypothetical protein DAPPUDRAFT_225024 [Daphnia pulex]
Length = 573
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G +++VP + G+IIG+ GE I + ++ ARIK+ P +R+ LI G E
Sbjct: 54 GSIYLKVLVPSVAAGAIIGKGGETIAQVQKEVNARIKMSKANDFYPGTTERVCLIKGTTE 113
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
+ + +R + P D D+K V++LVP++ A +IGK GS IK
Sbjct: 114 SVMSMLTFICEKIRDKPDPNAKPAMDFDSKTPAERDKQVKILVPNSTAGMIIGKGGSFIK 173
Query: 193 SIQENSGASVRV 204
I+E SGA +++
Sbjct: 174 QIKEESGAYIQI 185
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVPS A +IGK G I +Q+ A +++ A++ FY ER+ ++G V
Sbjct: 58 LKVLVPSVAAGAIIGKGGETIAQVQKEVNARIKMSKAND--FYPGTTERVCLIKGTTESV 115
Query: 231 LKALEAVVGHLR 242
+ L + +R
Sbjct: 116 MSMLTFICEKIR 127
>gi|324518489|gb|ADY47116.1| Heterogeneous nuclear ribonucleoprotein K [Ascaris suum]
gi|324519835|gb|ADY47493.1| Heterogeneous nuclear ribonucleoprotein K, partial [Ascaris suum]
Length = 361
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 137/336 (40%), Gaps = 45/336 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R++VP G++IG+ GE IK+ + A + + D +P+RIV I +
Sbjct: 40 LRLLVPSRGAGAVIGKGGESIKRLRAECDATLTIPDS--QTPERIVTIVAE--------- 88
Query: 140 AMDAAVRVFKRV-----SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+D +R + L D D + S +RLLV + A +IG+ G IK +
Sbjct: 89 -IDNVIRCVNEIIPRLDECLKTRDSDDEGSARGESELRLLVHQSHAGAIIGRGGYRIKEL 147
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+E + ++V S ER++++ G K++ + ++ L++ + P
Sbjct: 148 REETSTQLKVYSQ----CCPQSTERVIQIIGVPEKIIACVILIINMLKEIPIKGPSRPYE 203
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
Y+ + E D++ + + P R P+ R G
Sbjct: 204 SMFYDPNFVHEYG-GFPPDRNYRGMGPRGGMYGGGLPP---------RAPRFPYGGRGMG 253
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
+ + S A Q TQ + IP IIG GG I IR SGA
Sbjct: 254 MGV------------SPFPPAPFGGPMQTTQ-VTIPNELGGTIIGKGGERINRIREESGA 300
Query: 375 IITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
I V+ + + I + I G+ +Q+Q AQ L+Q+++
Sbjct: 301 HIVVEPQQPNSERI-ITISGSHAQIQTAQYLLQQWI 335
>gi|170048061|ref|XP_001851517.1| nova [Culex quinquefasciatus]
gi|167870269|gb|EDS33652.1| nova [Culex quinquefasciatus]
Length = 534
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 11/152 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
F+ +VP + G+IIG+ GE I +D AR+K+ P +R+ LISG +
Sbjct: 29 FKTLVPSVAAGAIIGKGGETIASLQKDAGARVKMSKAHDFYPGTSERVCLISGTVDG--- 85
Query: 137 VSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ +D + + + + + DAK + V++LVP++ A +IGK G+ IK I
Sbjct: 86 ILTVLDFIIDKIREKPDMTKALTEADAKQAAERDKQVKVLVPNSTAGMIIGKAGAFIKQI 145
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGE 226
+E+SG+ V++ + P +T ER + + GE
Sbjct: 146 KEDSGSYVQI---SQKPKELTLQERCITIIGE 174
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+ LVPS A +IGK G I S+Q+++GA V++ A + FY ER+ + G +
Sbjct: 29 FKTLVPSVAAGAIIGKGGETIASLQKDAGARVKMSKAHD--FYPGTSERVCLISGTVDGI 86
Query: 231 LKALEAVVGHLRK 243
L L+ ++ +R+
Sbjct: 87 LTVLDFIIDKIRE 99
>gi|260064185|gb|ACX30053.1| MIP13670p [Drosophila melanogaster]
Length = 346
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 148 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 204
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 205 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 264
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 265 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKI 308
>gi|255719726|ref|XP_002556143.1| KLTH0H06050p [Lachancea thermotolerans]
gi|238942109|emb|CAR30281.1| KLTH0H06050p [Lachancea thermotolerans CBS 6340]
Length = 392
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 146/343 (42%), Gaps = 46/343 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM+ V + I+G GE I + E+T RI V D P+R++ I G+ E A
Sbjct: 58 LRMLCLVKQASMIVGPGGEKISRMKEETNTRINVSDNIRGVPERVIFIRGRCEDVA---- 113
Query: 140 AMDAAVRVFKRVSGLPENDVDAKAS-GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
+VF V + D ++S +A ++ +L+P +IG+QGS ++ I+E S
Sbjct: 114 ------KVFGMVVRAINGETDGESSEQSATLTLNILIPHHMMGCVIGRQGSRLREIEELS 167
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
A L A ++ D RI+ + G A + H+ + V Q +L +
Sbjct: 168 AAK---LMAGPQTLPMSND-RILCVSGVADAI---------HIATYYVGQTIL-----NH 209
Query: 259 NASISQERQVETWADKSSLHA--------ATQSAISTEYTPSTRRESLFLEREPQLESRY 310
A+ + ++ + + S LH+ + Q +Y P + + Y
Sbjct: 210 KATFASKKCI--FYLPSLLHSVLVNSYGVSLQHQQQHQYRPGENGKKRLHRYSASPDFGY 267
Query: 311 RLSGI------SIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTS 364
G+ +++ A T+ ++ + A P ++ I Q + I +Y ++IG GG
Sbjct: 268 AYPGVPSAPHMAVHNVRVA-DTLAAATIPPALAPQLSLIQQEVYIDDNYVGNVIGKGGKH 326
Query: 365 IENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
I +I+ T+G I + + E + I+GT Q A LI
Sbjct: 327 INSIKETTGCSIQIDDHVEGCSERKILIRGTPIGSQTAILLIN 369
>gi|332023471|gb|EGI63714.1| Far upstream element-binding protein 1 [Acromyrmex echinatior]
Length = 731
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 94/422 (22%), Positives = 169/422 (40%), Gaps = 55/422 (13%)
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPV 137
C + VP VG IIGR GE I + +T +I++ P+R+ ++G E
Sbjct: 101 CNEDIRVPDKMVGLIIGRGGEQITRLQTETGCKIQMAPESGGLPERVCTLTGSREAVNRA 160
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS----VRLLVPSTQAINLIGKQGSLIKS 193
+ + V R G+ D++ SG+ V +++P + +IGK G IK
Sbjct: 161 KELVLSIVNQRSRSEGI--GDMNMSGSGSGMMGHPGFVEIMIPGPKVGLIIGKGGETIKQ 218
Query: 194 IQENSGASVRVL-----SADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR--KFLV 246
+QE SGA + V+ E P +T D + VE + L A + + R +
Sbjct: 219 LQEKSGAKMVVIQEGPSQEQEKPLRITGDPQKVEYAKQLVYELIAEKEIQMFHRGGRGAT 278
Query: 247 DQGVLPLFEKTYNASISQERQVETWADKSSL------------------HAATQSAISTE 288
D+ + +N + VE ++++ A Q E
Sbjct: 279 DRTGNYSNDSGFNHGPANSDGVEVLVPRAAVGVVIGKGGDMIKKIQAESGAKVQFQQGRE 338
Query: 289 YTPSTRRESLFLEREPQLESRYRLSGI--SIYGQDPALSTI-------RSSALG------ 333
P R+ L + + ++R R+ + S+ +D + + R + G
Sbjct: 339 EGPGDRKCLLSGKHQAVEQARQRIQELIDSVMRRDDGRNNMGGRGSGPRGNGFGGNRNPN 398
Query: 334 -------RASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QESRGLP 385
R GP+ +I T +P S IIG GG +I+ I + +GA + + ++
Sbjct: 399 EYGTWDRRQGGPMQDKIETTFTVPSSKCGIIIGKGGETIKQINQQTGAHCELDRRNQSNE 458
Query: 386 DEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYPQLGNSSYPSSSL 445
+E I+G QV+ A+++ E + + + Q GY P++ G ++P+
Sbjct: 459 NEKIFIIRGNPEQVEHAKRIFSEKLGMGPAGSSYTAAQGAVGYNPNW-NTGYQAWPNQPQ 517
Query: 446 ST 447
ST
Sbjct: 518 ST 519
>gi|390347463|ref|XP_792931.3| PREDICTED: poly(rC)-binding protein 3-like [Strongylocentrotus
purpuratus]
Length = 369
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 12/241 (4%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
S+RL+VP++Q +LIGK GS IK I+E + AS+ V S + ER V + G
Sbjct: 19 SLRLIVPTSQCGSLIGKGGSKIKDIRETTSASITVASE----MLPSSTERAVTISGTPEA 74
Query: 230 VLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEY 289
+ KA+ V + + +P K A I + ++ LH A+ Y
Sbjct: 75 ITKAIYQVCCVMLESPPKGATIPYRPKPATAPIIFAGGSVSMTEQH-LHQQQAYAVHGNY 133
Query: 290 TPSTRRESLFLEREPQLESRYRLSGISIYGQDP-ALSTIRSSALGRASGPIVTQ---ITQ 345
+ + QL ++ + +I GQ P + + + A A+ P Q TQ
Sbjct: 134 A---LAQPDLTKLHHQLALHHQQTPYAIPGQTPFSPAALTQFAAQTAAPPPQVQGQATTQ 190
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQL 405
+ IP +IG GGT I+ IR+ SGA I + S+ + +V I G+ V +AQ L
Sbjct: 191 EITIPNHLIGCVIGRGGTKIQEIRQMSGANIKIANSQEGSTDRSVTITGSPESVAVAQCL 250
Query: 406 I 406
I
Sbjct: 251 I 251
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 72 PGWPGHCV-FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV-SSPDRIVLISG 129
PG P V R+IVP + GS+IG+ G IK E T A I V + SS +R V ISG
Sbjct: 11 PGTPKPPVSLRLIVPTSQCGSLIGKGGSKIKDIRETTSASITVASEMLPSSTERAVTISG 70
Query: 130 KEE 132
E
Sbjct: 71 TPE 73
>gi|393905262|gb|EJD73914.1| hypothetical protein LOAG_18700 [Loa loa]
Length = 228
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 19/175 (10%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+VGSIIG++G+ IK + + A+I + DG S P+RIV I+G + +
Sbjct: 12 EVGSIIGKRGDHIKLIRDQSGAKINISDG--SCPERIVTITG----------STGTINKA 59
Query: 148 FKRVSGLPENDVDAKASGAAF--CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL 205
F + + D+ A + ++RL+VP+TQ +IGK GS IK I+E +GAS++V
Sbjct: 60 FIMICAKLQQDLQALPNSIPKPPITMRLIVPATQCGCIIGKGGSKIKEIREATGASIQVA 119
Query: 206 SADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK-TYN 259
S + ER V + G A ++ + + L + LP K T+N
Sbjct: 120 SE----MLPSSTERAVTISGSADSIVDCMRNICQILLEAPAKGNTLPYRPKPTFN 170
>gi|390177062|ref|XP_003736268.1| GA30025, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858892|gb|EIM52341.1| GA30025, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 714
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 244 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 300
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDA--KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ +D + + L +DA K + V++LVP++ A +IGK G+ IK I
Sbjct: 301 IMVVLDFIMDKIREKPDLTTKIIDAESKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 360
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E+SG+ V++ + P V+ ER + + G+ A + ++
Sbjct: 361 KEDSGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMIL 401
>gi|328720738|ref|XP_001949210.2| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 436
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 14/166 (8%)
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP 136
+ R++ +VG++IG+ GE +K + + AR+ + DG S+P+RIV I+G
Sbjct: 20 NLTIRILFHGREVGNVIGKGGETVKNIRDQSGARVLISDG--STPERIVTITGTTNAICK 77
Query: 137 VSPAMDAAVR-VFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
+ + V F+R +G D + + F +L+VP++Q +IGK G IK I+
Sbjct: 78 ATELIGLKVEEFFERQNG----DWNGPKAPLTF---KLIVPASQCGFIIGKGGCKIKEIR 130
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
E+SGA+++V S D P ER+V + G + + + V L
Sbjct: 131 ESSGAAIQVAS-DMLP---NSTERLVSITGTTGTISQCVYQVCNVL 172
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 158 DVDAKASGAAF-------CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEA 210
+V ++G++F ++R+L + N+IGK G +K+I++ SGA RVL +D
Sbjct: 3 NVQQSSNGSSFNDYNDVNLTIRILFHGREVGNVIGKGGETVKNIRDQSGA--RVLISDG- 59
Query: 211 PFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
+ ERIV + G + KA E + + +F Q
Sbjct: 60 ----STPERIVTITGTTNAICKATELIGLKVEEFFERQ 93
>gi|255732373|ref|XP_002551110.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131396|gb|EER30956.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 576
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 110/245 (44%), Gaps = 25/245 (10%)
Query: 8 DNGSINLP-EPDPQPETATTESPTTESEAPPTIGSENT---EHTTESDSALPQSTGPDAA 63
DNG + P E DPQ E+ + T +S A E E +TES + P S+
Sbjct: 110 DNGERDAPVEKDPQDESGEKDE-TNDSSAKQDATLEPAYVPEASTESHAEEPSSSS-KPI 167
Query: 64 AVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDR 123
+ EK P + FRM PV + +I+G+KGE I E RI V D P+R
Sbjct: 168 SNHREKDDPTF---VSFRMYCPVKEASAIVGKKGETISHLREKAAVRITVSDNLKGVPER 224
Query: 124 IVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINL 183
IV + G P V+ A RV L E + + + + +++LL+P +
Sbjct: 225 IVTVKG---PAENVARAFGLITRVI-----LNEPEDEPASINSLQYNLKLLIPHPLIGFI 276
Query: 184 IGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
IGK G + I+ENS A L A E P + D R++ + G V A+ V ++ +
Sbjct: 277 IGKSGLKFREIEENSAAK---LKAAETPLPYSTD-RVLSVMG----VGDAIHIAVYYISQ 328
Query: 244 FLVDQ 248
+++
Sbjct: 329 VILEH 333
>gi|384490263|gb|EIE81485.1| hypothetical protein RO3G_06190 [Rhizopus delemar RA 99-880]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 18/175 (10%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
G+ R +V + G IIG+ G+ + + + + AR+ + D + +RI+ + G
Sbjct: 77 GNISLRSLVGMKDAGLIIGKGGKNVSEIRDSSMARVNISDIVPGAAERILTVVG------ 130
Query: 136 PVSPAMDAAVRVFKRVSGLPENDV--DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKS 193
PVS A V +++ + EN + D K ++++L+ + + ++IGK GS+I+S
Sbjct: 131 PVSAVAKAYALVAEKI--IEENTLAEDNKGPIQQDVTIKILILANRMGSIIGKSGSVIRS 188
Query: 194 IQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
IQE SGA V SA E P ++ ER+V + G A+E V + LVDQ
Sbjct: 189 IQETSGAKV---SAQEEPLPLST-ERVVTIHGTP----DAIEQAVKKIGDILVDQ 235
>gi|406608142|emb|CCH40576.1| Poly(rC)-binding protein 2 [Wickerhamomyces ciferrii]
Length = 457
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 97/413 (23%), Positives = 162/413 (39%), Gaps = 59/413 (14%)
Query: 39 IGSENTEHTTESDSALPQSTGPDAA----AVPEEK-KWPGWPGHCVFRMIVPVLKVGSII 93
I +E+ + + +SA+ + G +++ A+ K G P + FRM+ V + ++
Sbjct: 43 IKTEDNQENNDINSAIAAAVGGESSEGSRAISSHKVHQDGDPTYVHFRMLCQVKEAALVV 102
Query: 94 GRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSG 153
G+ GE I E + RI V + +R++ + G E A M A+
Sbjct: 103 GKGGEKISHIKEVSGTRINVSENIRGVTERVIHVRGPAENVAKAFGLMTRAI-------- 154
Query: 154 LPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFY 213
L E + + +++LL+P +IGKQG K I+ENS A + S+ PF
Sbjct: 155 LDEEENVPSTVDSHHFALQLLIPHQVIGYVIGKQGGKFKEIEENSAAKLNA-SSHSMPFS 213
Query: 214 VTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL---PLFEKT---YNASISQERQ 267
+R + + G A + H+ + V Q VL P F+ Y+ +
Sbjct: 214 T---DRCLTIAGVADSI---------HIATYYVAQTVLTHKPNFKGKVIFYDPGQQHQHH 261
Query: 268 VETWADKSSL--HAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISI-------- 317
+ +L H P + + PQ + R L +
Sbjct: 262 QQQQQQHLNLPQHHLQHHQPGLPPNPLLFNGMMNFGQLPQFDQRQLLQFNNFARPQHNRN 321
Query: 318 ----YGQDPALST----------IRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGT 363
+ Q P S + SS G P QITQ + IP Y ++IG G
Sbjct: 322 HNGKFQQRPPFSMNVPINPLTLPLASSTGGVGGSP---QITQEIFIPNEYVGNVIGKSGK 378
Query: 364 SIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKES 416
+I+ I+ TSG+ I + + E + + GTS+ Q A LI + + K S
Sbjct: 379 NIKLIKDTSGSKIQIADPNPESKERKITLVGTSAGNQTAIFLINNRIESDKRS 431
>gi|402590061|gb|EJW83992.1| hypothetical protein WUBG_05097, partial [Wuchereria bancrofti]
Length = 210
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 19/175 (10%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+VGSIIG++G+ IK + + A+I + DG S P+RIV I+G ++ +
Sbjct: 1 EVGSIIGKRGDHIKLIRDQSGAKINISDG--SCPERIVTITG----------SIGTINKA 48
Query: 148 FKRVSGLPENDVDAKASGAAF--CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL 205
F + + D+ A + ++RL+VP+TQ +IGK G+ IK I+E +GAS++V
Sbjct: 49 FGMICAKLQQDLQALPNSIPKPPITMRLIVPATQCGCIIGKGGTKIKEIREATGASIQVA 108
Query: 206 SADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK-TYN 259
S + ER V + G A ++ + + L + LP K T+N
Sbjct: 109 SE----MLPSSTERAVTISGSADSIVDCMRNICQILLEAPPKGNTLPYRPKPTFN 159
>gi|334187557|ref|NP_196518.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|332004027|gb|AED91410.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 612
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Query: 99 LIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND 158
++ KT T A I V D +R+V I+ E+ + S + A V VF S + EN
Sbjct: 325 VVIKTRSVTDASISVGDRHPDCDERLVTITAFEKTKDITSESQRALVLVF---SNMYEN- 380
Query: 159 VDAKASGAAFCS---VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVT 215
AK + S RL+V S Q L+G++G + +IQ+ +GA + VL+ ++ P V+
Sbjct: 381 ATAKVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVS 440
Query: 216 EDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
E+ ++V++ GE V +A+ V LR+ L++Q
Sbjct: 441 ENNQVVQISGEFPNVREAINQVTSMLREDLINQ 473
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 34/191 (17%)
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIVLISGKEEPEA 135
+ FR++ V + G +IG+ G ++KK + T + I V P+ SP RI+ I G +
Sbjct: 29 YVTFRILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSVS 88
Query: 136 PV-----------------------SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVR 172
V S A A +RVF+ + N D +S S
Sbjct: 89 RVKLGVIVNNVSNREKKEQEQEVEVSRAQYALIRVFEAL-----NFGDCTSSTV---SCN 140
Query: 173 LLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE-AAKVL 231
LL+ + + +IGK G L++ I E +G +V++ S D + + +++++G + V+
Sbjct: 141 LLMEGSHVVTVIGKNGELMQRILEETGCNVQLRSHDLS-ICTNPGDVVLKIEGNRLSAVM 199
Query: 232 KALEAVVGHLR 242
KAL ++ L+
Sbjct: 200 KALVSISSRLQ 210
>gi|224127654|ref|XP_002329331.1| predicted protein [Populus trichocarpa]
gi|222870785|gb|EEF07916.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 94/185 (50%), Gaps = 30/185 (16%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI-------- 127
G V+R++ P K+G +IG+ G ++K E+T+++I V D S +R+++I
Sbjct: 42 GDTVYRILCPSRKIGGVIGKGGNIVKALREETQSKITVADSVQGSDERVIIIYSSSDKPP 101
Query: 128 ------------SGKEEPEAPVSPAMDAAVRVFKRV------SGLPENDVDAKASGAAFC 169
+G++E P A DA ++V R+ G+ +D +
Sbjct: 102 RKMDGDEGLPAGNGQQEAFEPHCAAQDALLKVHDRIVEEDLFGGMASDDDNDNN----VV 157
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
+ RLLVP+ ++GK+G +I+ ++ +GA++RVL AD P + + +V++ G+ A
Sbjct: 158 TARLLVPNNMVGCVLGKRGDVIQRLRSETGANIRVLPADHLPSCAMDTDELVQISGKPAV 217
Query: 230 VLKAL 234
+AL
Sbjct: 218 AKRAL 222
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
+K ++T A I V D S +R + +S E P S +DA +++ + S E
Sbjct: 333 VKIVQQETGASIHVEDASAESEERAIRVSAFEGLWNPRSQTIDAILQLQDKTSDFSEK-- 390
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDER 219
RLLVPS++ ++G+ G +I ++ A +RV ++ P ++DE
Sbjct: 391 -------GMIITRLLVPSSKVGCILGQGGQVINEMRRRLQADIRVYPKNDKPKCASDDEE 443
Query: 220 IVEMQGEAAKVLKALEAVVGHLR 242
+V++ G AL + LR
Sbjct: 444 LVQISGNYGVAKDALAEIASRLR 466
>gi|218184819|gb|EEC67246.1| hypothetical protein OsI_34185 [Oryza sativa Indica Group]
Length = 470
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 116 GPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLV 175
G +S +R++++S +E P+ PVSP ++A + + +VS L EN + RL+V
Sbjct: 218 GKNASEERLIVVSSQEIPDDPVSPTIEALILLHSKVSTLAENHQ---------LTTRLVV 268
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
PS + ++G+ G +I ++ +GA +RV S + P Y++ DE +V+
Sbjct: 269 PSNKVGCILGEGGKVITEMRRRTGAEIRVYSKADKPKYLSFDEELVQ 315
>gi|255943089|ref|XP_002562313.1| Pc18g04820 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587046|emb|CAP94706.1| Pc18g04820 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 366
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 129/307 (42%), Gaps = 37/307 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G+ S
Sbjct: 49 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGQLR-----SL 103
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A A+ + G P+ + S VRLL+ Q +IG+QG IK IQ+ SG
Sbjct: 104 ARAYAIVAKGLLEGAPQMGMGGIVSNNGTHPVRLLISHNQMGTIIGRQGLKIKHIQDASG 163
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
VR+++ E T ERIVE+QG + +E + + K L+D YN
Sbjct: 164 --VRMVAQKEMLPQST--ERIVEVQGTP----EGIEKAIWEIGKCLLDDWQRGTGTVLYN 215
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
++ + + L+ + + S+R +Y +G
Sbjct: 216 PAVR-----ASLSGSQPLNNNPPAGNGYQNNTSSR--------------QYNRTGNGADF 256
Query: 320 QDPALSTIRSSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
D + +S G P+VT+ TQ + IP IIG GGT I IRR+SGA
Sbjct: 257 SDGGYNRRSNSDAGNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGTKITEIRRSSGA 316
Query: 375 IITVQES 381
I++ ++
Sbjct: 317 RISIAKA 323
>gi|320542558|ref|NP_001189200.1| pasilla, isoform L [Drosophila melanogaster]
gi|318068744|gb|ADV37291.1| pasilla, isoform L [Drosophila melanogaster]
Length = 758
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 254 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 310
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 311 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 370
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E SG+ V++ + P V+ ER + + G+ A + ++
Sbjct: 371 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMIL 411
>gi|71895775|ref|NP_001025686.1| neuro-oncological ventral antigen 2 [Xenopus (Silurana) tropicalis]
gi|62205009|gb|AAH93475.1| neuro-oncological ventral antigen 2 [Xenopus (Silurana) tropicalis]
Length = 413
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 60 PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS 119
P A + G G ++++P GSIIG+ G+ I + +T A IK+
Sbjct: 16 PTEATSTKRSNTAGEDGELFLKVLIPSYAAGSIIGKGGQTIVQLQRETGATIKLSKSKDF 75
Query: 120 SP---DRIVLISGKEEPEAPVSPAMDAAVRVF-----KRVSGL---PENDVDAKASGAAF 168
P +R+ L+ G E V + VR K G+ P+ ++A+ + A
Sbjct: 76 YPGTTERVCLVQGSAESLLSVHNFIAEKVREVPQGGTKNDLGVLLPPQTTINAERAKQA- 134
Query: 169 CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAA 228
+L+VP+T A +IGK G+ ++SI E SGA V++ P ER+V + GE +
Sbjct: 135 ---KLIVPNTTAGLIIGKGGATVRSIMEESGAWVQLSQKPAGPNL---HERVVTVSGEPS 188
Query: 229 KVLKALEAVVGHLRK 243
+V KA+ +++ R+
Sbjct: 189 QVQKAIRSIIHKSRE 203
>gi|296825084|ref|XP_002850758.1| KH domain RNA-binding protein [Arthroderma otae CBS 113480]
gi|238838312|gb|EEQ27974.1| KH domain RNA-binding protein [Arthroderma otae CBS 113480]
Length = 367
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 142/345 (41%), Gaps = 46/345 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P S
Sbjct: 50 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG---PLQGTSK 106
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + + G P+ + SVRLL+ Q +IG+QG IK IQ+ SG
Sbjct: 107 AYSIVAKSL--LEGAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQGLKIKYIQDASG 164
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
VR+++ E ERIVE+QG + +E + + K L+D YN
Sbjct: 165 --VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAIWEIGKCLIDDWQRGTGTVLYN 216
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
++ ++S+ + A + PS S S R + +
Sbjct: 217 PAV-----------RASVGSGPGQASAAGSNPSYGGNS---------RSYNRTGNGADFS 256
Query: 320 QDPALSTIRSSALGRASG-PIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
P R + G P+VT+ TQ + IP IIG GGT I IRR+SG
Sbjct: 257 DHPGSYGRRGNNDNPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGTKISEIRRSSG 316
Query: 374 AIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
A I++ ++ P + T E I G++ + A L+ E + K
Sbjct: 317 ARISIAKA---PHDDTGERMFTIMGSAQANEKALYLLYENLEAEK 358
>gi|442618214|ref|NP_001262415.1| pasilla, isoform R [Drosophila melanogaster]
gi|440217247|gb|AGB95797.1| pasilla, isoform R [Drosophila melanogaster]
Length = 780
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 276 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 332
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 333 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 392
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E SG+ V++ + P V+ ER + + G+ A + ++
Sbjct: 393 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMIL 433
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 276 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 333
Query: 231 LKALEAVVGHLRK 243
+ +E ++ +R+
Sbjct: 334 MVVMEFIMDKIRE 346
>gi|350646767|emb|CCD58488.1| soluble guanylate cyclase gcy, putative [Schistosoma mansoni]
Length = 1102
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 17/162 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
F+++VP + G+IIG+KGE I+ T AR+K+ P +R+ LI G E
Sbjct: 6 FKILVPNVAAGAIIGKKGEAIETIKRQTGARLKMSRADDFYPGTTERVCLIIGTLE---- 61
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+ V ++S P+N +G V++LVP + A +IGK G+ I+ I+E
Sbjct: 62 --ACIQLHDYVMAKISKRPQNIAIITPTG-----VKILVPDSTAGIIIGKFGNFIERIKE 114
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
S A ++V + P + ER + + GE + KA+E ++
Sbjct: 115 ESNAFIQV---SQRPKDIRLFERCIVITGELKERRKAVEMIL 153
>gi|360042755|emb|CCD78165.1| putative poly(rc) binding protien [Schistosoma mansoni]
Length = 862
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 13/147 (8%)
Query: 94 GRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKR--V 151
G++GE ++K E++ ARI + DG SSP+RIV I+G E + A R F+
Sbjct: 190 GKRGENVRKYREESGARINISDG--SSPERIVTITGTTEQ---IYIAFTLMSRKFEDDFT 244
Query: 152 SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAP 211
GL + + + ++RLLVP Q ++IGK GS IK ++E +GAS++V A EA
Sbjct: 245 QGLLR--MGDETANCPPVTLRLLVPVAQCGSIIGKGGSKIKDVRELTGASIQV--ASEA- 299
Query: 212 FYVTEDERIVEMQGEAAKVLKALEAVV 238
T ER V + G A + K + +
Sbjct: 300 -LPTSTERTVTISGTADSISKCIRLLC 325
>gi|350412234|ref|XP_003489579.1| PREDICTED: far upstream element-binding protein 1-like [Bombus
impatiens]
Length = 736
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 94/407 (23%), Positives = 162/407 (39%), Gaps = 54/407 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
G C + VP VG IIGR GE I + +T +I++ P+R+ ++G E
Sbjct: 106 GICNEDIRVPDNMVGLIIGRGGEQITRLQSETGCKIQMAPESGGLPERLCTLTGSREAVN 165
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS--VRLLVPSTQAINLIGKQGSLIKS 193
+ + V R G+ D+ + G S V +++P + +IGK G IK
Sbjct: 166 RAKELVLSIVNQRSRTEGI--GDMGGSSGGIMSHSGFVEIMIPGPKVGLIIGKGGETIKQ 223
Query: 194 IQENSGASVRVL-----SADEAPFYVTEDERIVEMQGEAA-KVLKALEAVVGHLRKFLVD 247
+QE SGA + V+ E P +T D + VE + +++ E + H D
Sbjct: 224 LQEKSGAKMVVIQEGPSQEQEKPLRITGDPQKVEYAKQLVYELIAEKEMQMFHRGARGND 283
Query: 248 QGVLPLFEKTYNASISQERQVETWADKSSL------------------HAATQSAISTEY 289
+ + ++N VE ++++ A Q E
Sbjct: 284 RSGNYSNDSSFNHGSGTTDGVEVLVPRAAVGVVIGKGGDMIKKIQAETGARVQFQQGRED 343
Query: 290 TPSTRRESLFLEREPQLESRYRLSGI--SIYGQDPALSTI------RSSALG-------- 333
P R+ + + + + R R+ + S+ +D S I R + G
Sbjct: 344 GPGDRKCIVSGKHQAVEQVRQRIQELIDSVMRRDDGRSNIGARSGPRGNGFGNNRNPNEY 403
Query: 334 -----RASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QESRGLPDE 387
R GP+ +I +P S IIG GG +I+ I + +GA + + ++ +E
Sbjct: 404 GGWDRRQGGPMQDKIETMFTVPSSKCGIIIGKGGETIKQINQQTGAHCELDRRNQSNENE 463
Query: 388 ITVEIKGTSSQVQLAQQLIQEY--MNNHKESITSSYGQIDTGYRPSY 432
I+G QV+ A+++ E M S T + G I GY P++
Sbjct: 464 KIFIIRGNPEQVEHAKRIFSEKLGMAPANTSFTGTQGAI--GYNPTW 508
>gi|256073934|ref|XP_002573282.1| poly(rc) binding protien [Schistosoma mansoni]
Length = 862
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 13/147 (8%)
Query: 94 GRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKR--V 151
G++GE ++K E++ ARI + DG SSP+RIV I+G E + A R F+
Sbjct: 190 GKRGENVRKYREESGARINISDG--SSPERIVTITGTTEQ---IYIAFTLMSRKFEDDFT 244
Query: 152 SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAP 211
GL + + + ++RLLVP Q ++IGK GS IK ++E +GAS++V A EA
Sbjct: 245 QGLLR--MGDETANCPPVTLRLLVPVAQCGSIIGKGGSKIKDVRELTGASIQV--ASEA- 299
Query: 212 FYVTEDERIVEMQGEAAKVLKALEAVV 238
T ER V + G A + K + +
Sbjct: 300 -LPTSTERTVTISGTADSISKCIRLLC 325
>gi|390177070|ref|XP_003736272.1| GA30025, isoform F [Drosophila pseudoobscura pseudoobscura]
gi|388858896|gb|EIM52345.1| GA30025, isoform F [Drosophila pseudoobscura pseudoobscura]
Length = 800
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 266 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 322
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDA--KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ +D + + L +DA K + V++LVP++ A +IGK G+ IK I
Sbjct: 323 IMVVLDFIMDKIREKPDLTTKIIDAESKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 382
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E+SG+ V++ + P V+ ER + + G+ A + ++
Sbjct: 383 KEDSGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMIL 423
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 266 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 323
Query: 231 LKALEAVVGHLRK 243
+ L+ ++ +R+
Sbjct: 324 MVVLDFIMDKIRE 336
>gi|340728851|ref|XP_003402727.1| PREDICTED: far upstream element-binding protein 1-like [Bombus
terrestris]
Length = 738
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 94/407 (23%), Positives = 162/407 (39%), Gaps = 54/407 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
G C + VP VG IIGR GE I + +T +I++ P+R+ ++G E
Sbjct: 106 GICNEDIRVPDNMVGLIIGRGGEQITRLQSETGCKIQMAPESGGLPERLCTLTGSREAVN 165
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS--VRLLVPSTQAINLIGKQGSLIKS 193
+ + V R G+ D+ + G S V +++P + +IGK G IK
Sbjct: 166 RAKELVLSIVNQRSRTEGI--GDMGGSSGGLMSHSGFVEIMIPGPKVGLIIGKGGETIKQ 223
Query: 194 IQENSGASVRVL-----SADEAPFYVTEDERIVEMQGEAA-KVLKALEAVVGHLRKFLVD 247
+QE SGA + V+ E P +T D + VE + +++ E + H D
Sbjct: 224 LQEKSGAKMVVIQEGPSQEQEKPLRITGDPQKVEYAKQLVYELIAEKEMQMFHRGARGND 283
Query: 248 QGVLPLFEKTYNASISQERQVETWADKSSL------------------HAATQSAISTEY 289
+ + ++N VE ++++ A Q E
Sbjct: 284 RSGNYSNDSSFNHGSGTTDGVEVLVPRAAVGVVIGKGGDMIKKIQAETGARVQFQQGRED 343
Query: 290 TPSTRRESLFLEREPQLESRYRLSGI--SIYGQDPALSTI------RSSALG-------- 333
P R+ + + + + R R+ + S+ +D S I R + G
Sbjct: 344 GPGDRKCIVSGKHQAVEQVRQRIQELIDSVMRRDDGRSNIGARSGPRGNGFGNNRNPNEY 403
Query: 334 -----RASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QESRGLPDE 387
R GP+ +I +P S IIG GG +I+ I + +GA + + ++ +E
Sbjct: 404 GGWDRRQGGPMQDKIETMFTVPSSKCGIIIGKGGETIKQINQQTGAHCELDRRNQSNENE 463
Query: 388 ITVEIKGTSSQVQLAQQLIQEY--MNNHKESITSSYGQIDTGYRPSY 432
I+G QV+ A+++ E M S T + G I GY P++
Sbjct: 464 KIFIIRGNPEQVEHAKRIFSEKLGMAPANTSFTGTQGAI--GYNPTW 508
>gi|388579892|gb|EIM20211.1| hypothetical protein WALSEDRAFT_33458 [Wallemia sebi CBS 633.66]
Length = 349
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 148/350 (42%), Gaps = 55/350 (15%)
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP 136
+ R ++ IIG+ G+ I K E + ++ V ++P+R++ +G+ +
Sbjct: 37 YLTVRSLIDTRDASIIIGKGGQNIAKIRETSGIKLVVSGSIPNNPERLLTATGQLDA--- 93
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAK---ASGAAFCSVRLLVPSTQAINLIGKQGSLIKS 193
VS A VR ND D G+ +++ +P+ + +IG+ G+ IK
Sbjct: 94 VSKAFGLVVRTI--------NDEDFNQPSLPGSKAVTLKFAIPNMKMGFIIGRAGAKIKE 145
Query: 194 IQENSGASVRVLSADEAPFYVTED--ERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
IQE SGA ++ ++D YV + ER++ + G V A+ + H+ L DQ +
Sbjct: 146 IQEASGA--KISTSD----YVLPNSTERVLSIDG----VADAVHIAIYHVGMILADQTAV 195
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTE-YTPSTRRESLFLEREPQLESRY 310
P E+ + Q +++ D SS + A + Y S P
Sbjct: 196 PSKERGDRRRV----QNQSYGDTSSYGSPAPYAAAPPVYGMLPTYASTVPGPAPA----- 246
Query: 311 RLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRR 370
+L G +G P L P+ +Q + +P + +IG GG+ I IR
Sbjct: 247 QLGGAPPFGGYPTL-------------PVAETTSQKIYVPNNLVGGLIGKGGSKINQIRY 293
Query: 371 TSGAIITV------QESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
TS I + +++ G E V I G +S +Q+A ++ E NN K
Sbjct: 294 TSQCSIKILEPGEGEQTEGPSIERLVLISGPASGIQIAINMLSEVSNNLK 343
>gi|402886179|ref|XP_003906515.1| PREDICTED: poly(rC)-binding protein 2 [Papio anubis]
Length = 340
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 17/129 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---------- 63
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSI 194
+A + F + E D+ + + + S +RL+VP++Q +LIGK G IK I
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 195 QENSGASVR 203
+E + A+++
Sbjct: 124 REVTEAALK 132
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++RLL+ + ++IGK+G +K ++E SGA + + S P ERI+ + G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNA 67
Query: 230 VLKALEAVVGHLRK 243
+ KA ++ L +
Sbjct: 68 IFKAFAMIIDKLEE 81
>gi|224097168|ref|XP_002310861.1| predicted protein [Populus trichocarpa]
gi|222853764|gb|EEE91311.1| predicted protein [Populus trichocarpa]
Length = 404
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 9/166 (5%)
Query: 64 AVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD- 122
A ++ K P FRMI P GSIIG+ G +++ T A I +L P+++ D
Sbjct: 242 ATDKDHKKPNEQLQVQFRMICPHGAAGSIIGKGGSVVRALQNQTGASI-ILAPPITNSDG 300
Query: 123 RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAF----CSVRLLVPST 178
R+V +S E E+ SPA +A + VF R E+D++ S + LL+PS
Sbjct: 301 RLVTVSALENLESSHSPAQNALLLVFARSI---EHDIERARSLGLIEEITVTATLLLPSN 357
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
+ LI + G + + E +GA +++L D+ + + ++ ++++Q
Sbjct: 358 RVSCLIERGGRIDSEMIETTGADIQILQGDQFFYCASNNDVVLQVQ 403
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
PG FR++ K+G++IG G +I + +T + + S R ++++G PE
Sbjct: 23 PGQVAFRVVCHASKIGALIGHSGSVISQIRLETGCLVHCEEAVKGSEHRAIVVAGSASPE 82
Query: 135 ----------APVSPAMDAAVRVFKRVSGLPENDVDAKASGA---AFCSVRLLVPSTQAI 181
VS A +A VRV +R+ +VDA G +C LL ++Q
Sbjct: 83 RKIAVGEDETVEVSAAQEAVVRVLERMW-----EVDAVKDGGDCEGYCG--LLANTSQIG 135
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEA-AKVLKALEAVVGH 240
++G++G IK ++ SGA + +L AP ++++++++ G + V KA+ A+
Sbjct: 136 AVVGREGRNIKRMKRASGAHIWILP---APLCALKEDQLIQITGSSTVAVKKAVIAITSC 192
Query: 241 LR 242
L+
Sbjct: 193 LQ 194
>gi|121710626|ref|XP_001272929.1| KH domain RNA-binding protein [Aspergillus clavatus NRRL 1]
gi|119401079|gb|EAW11503.1| KH domain RNA-binding protein [Aspergillus clavatus NRRL 1]
Length = 362
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 131/316 (41%), Gaps = 56/316 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P+
Sbjct: 46 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTG------PLQG 99
Query: 140 AMDAAVRVFK-RVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A V K + G P+ + + VRLL+ Q +IG+QG IK IQ+ S
Sbjct: 100 TARAYALVAKGLLEGAPQMGMGGIVNNNGTHPVRLLISHNQMGTIIGRQGLKIKHIQDAS 159
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E ERIVE+QG + +E V + K L+D Y
Sbjct: 160 G--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTGTILY 211
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
N ++ ++S+ T S+I+T T S S R
Sbjct: 212 NPAV-----------RASV--GTGSSINTNTTASNGYNSRPYNRT--------------- 243
Query: 319 GQDPALSTIRSSALGRASGP--------IVTQI-----TQTMQIPISYAEDIIGVGGTSI 365
G S +S+ R S P +VT+ TQ + IP IIG GG+ I
Sbjct: 244 GNGADFSDGQSAGYSRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGSKI 303
Query: 366 ENIRRTSGAIITVQES 381
IRR+SGA I++ ++
Sbjct: 304 TEIRRSSGARISIAKA 319
>gi|47220208|emb|CAF98973.1| unnamed protein product [Tetraodon nigroviridis]
Length = 345
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+KGE +KK E++ ARI + +G + P+RIV I+G
Sbjct: 18 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT-------- 67
Query: 140 AMDAAVRVFKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
D + F ++ E D+ ++ A+ ++RL+VP++Q +LIGK GS IK +
Sbjct: 68 --DTIFKAFAMIAYKFEEDIINSMSNSLATSKPPVTLRLVVPASQCGSLIGKGGSKIKEM 125
Query: 195 QE 196
+E
Sbjct: 126 RE 127
>gi|348578485|ref|XP_003475013.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Cavia
porcellus]
Length = 338
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 145/350 (41%), Gaps = 74/350 (21%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA---- 135
R+++ G++IG+ G+ IK D A + V D S P+RI+ IS E
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSISADIETIGEILK 102
Query: 136 PVSPAMDAAVRVFK--RVSGLP-ENDV-----DAKASGAAF-CSVRLLVPSTQAINLIGK 186
+ P ++ +++ S LP E+D G+ F C +RLL+ + A +IG
Sbjct: 103 KIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGV 162
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
+G+ IK ++E ++ + + + D + +G + +VG F
Sbjct: 163 KGAKIKELREIHIGVCECMNCNYSKYCTFRDLMAYDRRGRPGD---RYDGMVG----FSA 215
Query: 247 DQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQL 306
D ETW SAI T ++PS + + EPQ
Sbjct: 216 D---------------------ETW----------DSAIDT-WSPSEWQ----MAYEPQG 239
Query: 307 ESRYRLSGISIYGQDPALSTIRSSALGRASGPIVT-QITQTMQIPISYAEDIIGVGGTSI 365
S Y D + + R S G GPI+T Q+T IP A IIG GG I
Sbjct: 240 GSGY----------DYSYAGGRGS-YGDLGGPIITTQVT----IPKDLAGSIIGKGGQRI 284
Query: 366 ENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
+ IR SGA I + E ++ + I GT Q+Q AQ L+Q + + +
Sbjct: 285 KQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYAD 334
>gi|7671433|emb|CAB89374.1| putative protein [Arabidopsis thaliana]
Length = 567
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Query: 99 LIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEND 158
++ KT T A I V D +R+V I+ E+ + S + A V VF S + EN
Sbjct: 329 VVIKTRSVTDASISVGDRHPDCDERLVTITAFEKTKDITSESQRALVLVF---SNMYEN- 384
Query: 159 VDAKASGAAFCS---VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVT 215
AK + S RL+V S Q L+G++G + +IQ+ +GA + VL+ ++ P V+
Sbjct: 385 ATAKVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVS 444
Query: 216 EDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
E+ ++V++ GE V +A+ V LR+ L++Q
Sbjct: 445 ENNQVVQISGEFPNVREAINQVTSMLREDLINQ 477
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 44/195 (22%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV-SSPDRIVLISGKEEPEAPV- 137
FR++ V + G +IG+ G ++KK + T + I V P+ SP RI+ I G + V
Sbjct: 32 FRILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSVSRVK 91
Query: 138 ----------------------SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLV 175
S A A +RVF+ + N D +S S LL+
Sbjct: 92 LGVIVNNVSNREKKEQEQEVEVSRAQYALIRVFEAL-----NFGDCTSSTV---SCNLLM 143
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV-------EMQGE-A 227
+ + +IGK G L++ I E +G + S +A + + RI+ +++G
Sbjct: 144 EGSHVVTVIGKNGELMQRILEETGCN----SLIKALLFGSSSCRIIHGTYARDKIEGNRL 199
Query: 228 AKVLKALEAVVGHLR 242
+ V+KAL ++ L+
Sbjct: 200 SAVMKALVSISSRLQ 214
>gi|348581995|ref|XP_003476762.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Cavia porcellus]
Length = 360
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 23/126 (18%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G + ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQEN 197
K I+E+
Sbjct: 125 KEIRES 130
>gi|357621941|gb|EHJ73587.1| hypothetical protein KGM_22691 [Danaus plexippus]
Length = 431
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 11/151 (7%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+VGSIIG+KGE++K+ E++ A+I + DG S P+RIV ++G S A +
Sbjct: 5 EVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTGN------TSSIFKAFTLI 56
Query: 148 FKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA 207
K+ + A ++RL+VP++Q +LIGK GS IK I++ +G +++
Sbjct: 57 CKKFEEWCSQFNEGGGGSRAPITLRLIVPASQCGSLIGKGGSKIKEIRDVTGRLYVHVAS 116
Query: 208 DEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+ P ER V + G + + + +
Sbjct: 117 EMLP---NSTERAVTISGTCDAITQCIYHIC 144
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 325 STIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV---QES 381
S +RSS GR P Q + M +P IIG GGT I IR+ SGA+I + +E
Sbjct: 261 SQLRSSNTGRNQ-PATNQQSHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEER 319
Query: 382 RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
G + T+ I G V LAQ LI + K ++
Sbjct: 320 EGGSTDRTITISGNPDSVALAQYLINMSVELQKANL 355
>gi|302508471|ref|XP_003016196.1| hypothetical protein ARB_05593 [Arthroderma benhamiae CBS 112371]
gi|291179765|gb|EFE35551.1| hypothetical protein ARB_05593 [Arthroderma benhamiae CBS 112371]
Length = 531
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 144/345 (41%), Gaps = 46/345 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P S
Sbjct: 214 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG---PLQGTSK 270
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + + G P+ + SVRLL+ Q +IG+QG IK IQ+ SG
Sbjct: 271 AYSIVAKSL--LEGAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQGLKIKYIQDASG 328
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
VR+++ E ERIVE+QG + +E + + K L+D YN
Sbjct: 329 --VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAIWEIGKCLIDDWQRGTGTVLYN 380
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
++ ++S+ + + T PS S S R + +
Sbjct: 381 PAV-----------RASVGSGSGQGSVTGTNPSYGGSS---------RSYNRTGNGADFS 420
Query: 320 QDPALSTIRSSALGRASG-PIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
P+ + R + G P+VT+ TQ + IP IIG GGT I IRR+SG
Sbjct: 421 DHPSSYSRRGNNDNPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGTKISEIRRSSG 480
Query: 374 AIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
A I++ ++ P + T E I G++ + A L+ E + K
Sbjct: 481 ARISIAKA---PHDDTGERMFTIMGSAQANEKALYLLYENLEAEK 522
>gi|406866101|gb|EKD19141.1| KH domain RNA-binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 372
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 147/366 (40%), Gaps = 44/366 (12%)
Query: 59 GPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV 118
GPD +P+ + G R IV + G IIG+ G+ + ++T A+ V
Sbjct: 31 GPDGEPLPKTDEEYG-ESQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGAKAGVSKVVQ 89
Query: 119 SSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPST 178
DR++ I+G E +S A R + G P+ + S + ++LL+
Sbjct: 90 GVHDRVLTIAGGCEA---ISKAYAIVARAL--LEGAPQMGMGGVVSTSGTHPIKLLISHN 144
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
Q +IG+QG IK IQ+ SG VR+++ E ERIVE+QG + KA+ +
Sbjct: 145 QMGTIIGRQGLKIKHIQDASG--VRMVAQKE--MLPQSTERIVEIQGTPEGIQKAIWEIC 200
Query: 239 GHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESL 298
K L+D YN + + + + S+ T +
Sbjct: 201 ----KCLIDDWQRGTGTVLYNPVVRTQPGGGPGMGQGGGGNGRDNYNSSPRVMRTGNGND 256
Query: 299 FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQ------ITQTMQIPIS 352
F E P+ ++ RS++ GP TQ + IP
Sbjct: 257 FSENAPR-----------------TYNSRRSNSDAGQRGPPTHDENGEEYQTQNISIPSD 299
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQE 408
IIG G+ I IR++SGA I++ ++ P + T E I GT+ + A L+ E
Sbjct: 300 MVGCIIGRAGSKISEIRKSSGARISIAKA---PHDDTGERMFTIMGTTKANEAALYLLYE 356
Query: 409 YMNNHK 414
+ K
Sbjct: 357 NLEAEK 362
>gi|241956872|ref|XP_002421156.1| RNA binding protein, putative [Candida dubliniensis CD36]
gi|223644499|emb|CAX41315.1| RNA binding protein, putative [Candida dubliniensis CD36]
Length = 533
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 17/201 (8%)
Query: 49 ESDSALPQSTGPDAAAVP-EEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDT 107
ESD A Q+T +++ P + P RM PV + +I+GRKGE I E
Sbjct: 130 ESDHADEQNTASSSSSKPVSNHRDRDDPTFIQLRMYCPVKEASTIVGRKGETINHLREKA 189
Query: 108 RARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA 167
RI V + P+RIV + G P V+ A RV L E + + + +
Sbjct: 190 NVRITVSENLKGVPERIVAVKG---PAENVARAFGLITRVI-----LEEPEDEPASITSQ 241
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEA 227
+++LL+P +IGKQG + I+ENS A L A E P + D R++ + G
Sbjct: 242 QYNLKLLIPHPMIGFIIGKQGLKFREIEENSAAK---LKAAENPLPYSTD-RVLSVMG-- 295
Query: 228 AKVLKALEAVVGHLRKFLVDQ 248
V A+ V ++ + +++
Sbjct: 296 --VGDAIHIAVYYIAQVMLEH 314
>gi|161078118|ref|NP_001036691.1| pasilla, isoform I [Drosophila melanogaster]
gi|113194762|gb|ABI31151.1| pasilla, isoform I [Drosophila melanogaster]
Length = 519
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 79 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 135
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 136 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 195
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 196 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKI 239
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 79 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 136
Query: 231 LKALEAVVGHLRK 243
+ +E ++ +R+
Sbjct: 137 MVVMEFIMDKIRE 149
>gi|402593291|gb|EJW87218.1| KH domain-containing protein [Wuchereria bancrofti]
Length = 359
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 117/271 (43%), Gaps = 54/271 (19%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+R+LV S+ A +IG+QGS IK ++E G ++V + + P TE R+V ++G K+
Sbjct: 122 LRVLVHSSHAGAVIGRQGSKIKEMKEELGVQMKVFA--QCPPQSTE--RVVSIKGAPDKI 177
Query: 231 LKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEY- 289
L + ++ L++ + +GV +E + + S+EY
Sbjct: 178 LACVNHIMNMLKEIPI-KGVTKPYESMF----------------------YDPSYSSEYG 214
Query: 290 -TPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPI-VTQITQTM 347
P R + R P + Y G S Q + + AL GP TQ+T
Sbjct: 215 GYPPDRNYRGPMIRGPMAVTSYGNYGRSFQRQIGGRGPLSAVALPPYMGPEESTQVT--- 271
Query: 348 QIPISYAEDIIGVGGTSIENIRRTSGAIITV---QESRGLPDEITVEIKGTSSQVQLAQQ 404
IP IIG GG I +R SGA I V QES E + I GTS+ +Q AQ
Sbjct: 272 -IPNELGGTIIGKGGERINRVREESGAQIVVGPQQES----GERIITITGTSTAIQTAQY 326
Query: 405 LIQEYM-------------NNHKESITSSYG 422
L+Q+++ N+H E S G
Sbjct: 327 LLQQWLVLVSLGLKKFVQHNDHTEHYQDSSG 357
>gi|378726019|gb|EHY52478.1| hypothetical protein HMPREF1120_00690 [Exophiala dermatitidis
NIH/UT8656]
Length = 365
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 139/347 (40%), Gaps = 50/347 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + E+T + V DR++ ++G P+S
Sbjct: 48 LRAIVSTKEAGVIIGKAGKNVADLREETGVKAGVSKVVQGVHDRVLTVTG------PLSG 101
Query: 140 AMDAAVRVFK-RVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A V K + G P+ + +RLL+ Q +IG+QG IK IQ+ S
Sbjct: 102 IAKAYSLVAKGLLEGAPQVGMGGVVQNNGTHPIRLLISHNQMGTIIGRQGLKIKHIQDVS 161
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E ERIVE+QG + KA V + K LVD Y
Sbjct: 162 G--VRMVAQKE--MLPQSTERIVEVQGTPEGIDKA----VWEIGKCLVDDWQRGTGTVLY 213
Query: 259 NASISQERQVETWADKSSLHAATQSAI--STEYTPSTRRESLFLEREPQLESRYRLSGIS 316
N + V L A + Y R + ESR
Sbjct: 214 NPA------VRVQVGSGPLPPAVGGGLPAGNNYIGGGRSYNRTGNGADFSESR------- 260
Query: 317 IYGQDPALSTIRSSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRT 371
R + L R P+VT+ TQ + IP IIG GG+ I IR+T
Sbjct: 261 --------GYTRGNDLPRGGIPMVTEDGEEVQTQNISIPADMVGCIIGRGGSKISEIRKT 312
Query: 372 SGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
SGA I++ ++ P + T E I G++S + A L+ E + K
Sbjct: 313 SGARISIAKA---PHDDTGERMFTIMGSASANERALYLLYENLEAEK 356
>gi|335299140|ref|XP_003358506.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Sus scrofa]
Length = 360
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 29/179 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQEN--SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA----LEAVVGHLRKF 244
K I+E+ GA++ + + + +QG+ V A L+ + GH F
Sbjct: 125 KEIRESPPKGATIPYHPSLSLGTVLLSTNQGFSVQGQYGAVTPAEVTKLQQLSGHAVPF 183
>gi|154295229|ref|XP_001548051.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347829292|emb|CCD44989.1| similar to KH domain RNA-binding protein [Botryotinia fuckeliana]
Length = 371
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 148/366 (40%), Gaps = 44/366 (12%)
Query: 59 GPDAAAVPE-EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP 117
GPD +P+ ++++ R IV + G IIG+ G+ + ++T + V
Sbjct: 32 GPDGEPLPKTDEEYA--ESQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVV 89
Query: 118 VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPS 177
DR++ ISG + +S A + + G P+ + S ++LL+
Sbjct: 90 QGVHDRVLTISGGCDS---ISRAYSIVAKAL--LEGAPQMGMGGVVSNNGTHPIKLLISH 144
Query: 178 TQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
Q +IG+QG IK IQ+ SG VR+++ E T ERIVE+QG + KA+ +
Sbjct: 145 NQMGTIIGRQGLKIKHIQDASG--VRMVAQKEMLPQST--ERIVEVQGNPEGIQKAIWEI 200
Query: 238 VGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPS----T 293
K LVD YN + + + + EY S T
Sbjct: 201 C----KCLVDDWARGTGTVLYNPMVRTQ-----TGNSGGMSQGNVGGTGREYGSSRVMRT 251
Query: 294 RRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISY 353
+ F E P+ +R S + G P L TQ + IP
Sbjct: 252 GNGADFSESAPRSYNRRSESDAAQRG--PPTHDENGEEL----------QTQNISIPADM 299
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEY 409
IIG G+ I IR+TSGA I++ +S P + T E I GT+ A L+ E
Sbjct: 300 VGCIIGRAGSKISEIRKTSGARISIAKS---PHDETGERMFTIMGTAKANDSALYLLYEN 356
Query: 410 MNNHKE 415
+ K+
Sbjct: 357 LEAEKQ 362
>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 952
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 116 GPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLV 175
G +S +R++++S +E P+ PVSP ++A + + + S L EN + RL+V
Sbjct: 559 GKNASEERLIVVSSQEIPDDPVSPTIEALILLHSKASTLAENHQ---------LTTRLVV 609
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
PS + ++G+ G +I ++ +GA +RV S + P Y++ DE +V+
Sbjct: 610 PSNKVGCILGEGGKVITEMRRRTGAEIRVYSKADKPKYLSFDEELVQ 656
>gi|359488265|ref|XP_003633728.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
gi|296087281|emb|CBI33655.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 27/183 (14%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI----------- 127
V+R++ P K+G +IG+ G ++K E+T+A+I V D S +R+++I
Sbjct: 46 VYRILCPSKKIGGVIGKGGGIVKALREETQAKITVADSVPGSDERVIIIYSAPTKNPKEH 105
Query: 128 SGKEEPEA--------PVSPAMDAAVRVFKRV-----SGLPENDVDAKASGAAFCSVRLL 174
E+PE P PA DA ++V +R+ G E + D + + + RLL
Sbjct: 106 DSNEDPEMEEEQDHMEPHCPAQDALMKVHERIIEEDLFGGTEFEDDNENT---VVTARLL 162
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
VP+ L+GK+G +I+ ++ +GA++RVL A+ P + +V++ G+ A KAL
Sbjct: 163 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPTCAMSSDELVQISGKPAVAKKAL 222
Query: 235 EAV 237
V
Sbjct: 223 YEV 225
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
+K+ ++T A I V D S +R++ +S E P S ++A +++ + S
Sbjct: 336 VKQLQQETGASIHVEDALAESEERVIRVSSFEALWNPRSQTIEAILQLQNKTS------- 388
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDER 219
+ S + RLLVPS++ ++G+ G +I ++ + A +RV S ++ P ++DE
Sbjct: 389 --EYSDKGGMTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYSKEDKPKCASDDEE 446
Query: 220 IVEMQGEAAKVLKALEAVVGHLR 242
+V++ G AL + LR
Sbjct: 447 LVQISGNFGVAKDALAEIASRLR 469
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 348 QIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
+IP + +IG+GG ++ N+ +GA + +Q+ + E VEI+G+S + AQ ++Q
Sbjct: 550 KIPNNSVSSVIGMGGGNVANMSEMAGARVKLQDPQSGGSECVVEIRGSSEHLTAAQSILQ 609
Query: 408 EYM 410
+M
Sbjct: 610 AFM 612
>gi|354542879|emb|CCE39597.1| hypothetical protein CPAR2_600100 [Candida parapsilosis]
Length = 607
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 18/184 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
P + FRM PV + +++G+ G I E + +I++ + P+RI+ + G E
Sbjct: 209 PSYVSFRMYCPVKEASTVVGKGGAKINHLREKAQVKIQISENLKDVPERIITVKGTAE-- 266
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
V+ A VR + G PE D A + + +++LL+P+ ++IGKQG + I
Sbjct: 267 -NVAKAFGLIVRT---ILGEPE-DEPANLNSQQY-NLKLLIPNVIIGHIIGKQGLKFREI 320
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL----EAVVGHLRKFLVDQGV 250
+ENS A L A E+P + D R++ + G A + A+ E V+ H K ++ +G
Sbjct: 321 EENSAAK---LKAAESPLPHSTD-RVLSVLGVADAIHIAVYFIGEVVIEH--KDVLKRGK 374
Query: 251 LPLF 254
+ L+
Sbjct: 375 VILY 378
>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
Length = 861
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 116 GPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLV 175
G +S +R++++S +E P+ PVSP ++A + + + S L EN + RL+V
Sbjct: 541 GKNASEERLIVVSSQEIPDDPVSPTIEALILLHSKASTLAENHQ---------LTTRLVV 591
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
PS + ++G+ G +I ++ +GA +RV S + P Y++ DE +V+
Sbjct: 592 PSNKVGCILGEGGKVITEMRRRTGAEIRVYSKADKPKYLSFDEELVQ 638
>gi|307110043|gb|EFN58280.1| hypothetical protein CHLNCDRAFT_142255 [Chlorella variabilis]
Length = 306
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 107/238 (44%), Gaps = 32/238 (13%)
Query: 26 TESPTTESEAPPTIGSENTEHTTESDSALPQSTGP--DAAAVPEEKKWPGWPGHCVFRMI 83
T+ P E+ AP GS + A Q P A+VP E V+R++
Sbjct: 59 TKRPYDEAGAPAVAGSYQGTAAGYATDAKRQHVAPPLTPASVPRE---------TVYRLV 109
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI--SGKEEP---EAPVS 138
+ V+ IIGR G +++ + T R+K L P + +++V++ S +E P +
Sbjct: 110 LDVVDTALIIGRGGNTVRQIEQTTGGRVKRLQEPPGAREQVVVVWNSARELPSPGRMARN 169
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A +A V +RV EN A S RLL+ TQ ++ +++ EN
Sbjct: 170 TAQEALVDCVRRVV-FQEN-----APMGQPMSARLLISRTQEAGVMDNMNAIVA---ENP 220
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
G S+ + A E P +++ +VE+ GE +L A+EA+ LR+ P+ E+
Sbjct: 221 GISIELKRAQELPACALDNDVLVELSGEKYSLLAAVEALSHVLREH-------PILER 271
>gi|402225510|gb|EJU05571.1| hypothetical protein DACRYDRAFT_20011 [Dacryopinax sp. DJM-731 SS1]
Length = 413
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 134/357 (37%), Gaps = 78/357 (21%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
P + R ++ IIG+ G + + E + ARI V + +P+RI+ ++G
Sbjct: 119 PQNIHMRALIVTQDASIIIGKGGSHVNEIREKSGARITVSESIPGNPERILNVTGP---- 174
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDAKAS--GAAFCSVRLLVPSTQAINLIGKQGSLIK 192
+DA + F + ++ + S G+ +++ ++P+++ LIGK GS IK
Sbjct: 175 ------LDAVAKAFGLIVRQINDEPFEQPSVPGSRAVTIKFIIPNSRMGTLIGKAGSKIK 228
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLP 252
IQE SGA L A E ER++ + G A + H+ + V +L
Sbjct: 229 EIQEASGAK---LHASEG-LLPGSTERVLNVSGVADAI---------HIATYYVGNSLL- 274
Query: 253 LFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRL 312
+ SS HA+ + +R P + Y
Sbjct: 275 ----------------NSHPSYSSTHASYKQ-----------------QRRPMASTTY-- 299
Query: 313 SGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTS 372
Y + +S A P+ Q TQ IP IIG GG I IR S
Sbjct: 300 -----YPPNTPVSNYGYPGPAAAPAPVSLQQTQNFYIPNDLVGSIIGKGGAKINEIRHVS 354
Query: 373 GAIITVQESRGLP------------DEITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
G I + E P E V I G + +Q+A QL+ + K+ +
Sbjct: 355 GCQIKILEPGQGPAPGSGAVQPMSETERMVTITGGIANIQMAVQLLASRIEQEKQRL 411
>gi|147790774|emb|CAN72739.1| hypothetical protein VITISV_027256 [Vitis vinifera]
Length = 668
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 96/183 (52%), Gaps = 27/183 (14%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI----------- 127
V+R++ P K+G +IG+ G ++K E+T+A+I V D S +R+++I
Sbjct: 74 VYRILCPSKKIGGVIGKGGGIVKALREETQAKITVADSVPGSDERVIIIYSAPTKNPKEH 133
Query: 128 SGKEEPE--------APVSPAMDAAVRVFKRV-----SGLPENDVDAKASGAAFCSVRLL 174
+ E+PE P PA DA ++V +R+ G E + D + + + RLL
Sbjct: 134 NSNEDPEREEEQDHMEPHCPAQDALMKVHERIIEEDLFGGTEFEDDNENT---VVTARLL 190
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
VP+ L+GK+G +I+ ++ +GA++RVL A+ P + +V++ G+ A KAL
Sbjct: 191 VPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPTCAMSSDELVQISGKPAVAKKAL 250
Query: 235 EAV 237
V
Sbjct: 251 YEV 253
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV 159
+K+ ++T A I V D S +R++ +S E P S ++A +++ + S
Sbjct: 364 VKQLQQETGASIHVEDALAESEERVIRVSSFEALWNPRSQTIEAILQLQNKTS------- 416
Query: 160 DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDER 219
+ S + RLLVPS++ ++G+ G +I ++ + A +RV S ++ P ++DE
Sbjct: 417 --EYSDKGGMTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYSKEDKPKCASDDEE 474
Query: 220 IVEMQGEAAKVLKALEAVVGHLR 242
+V++ G AL + LR
Sbjct: 475 LVQISGNFGVAKDALAEIASRLR 497
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 348 QIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
+IP + +IG+GG ++ N+ +GA + +Q+ + E VEI+G+S + AQ ++Q
Sbjct: 578 KIPNNSVSSVIGMGGGNVANMSEMAGARVKLQDPQSGGSECVVEIRGSSEHLTAAQSILQ 637
Query: 408 EYM 410
+M
Sbjct: 638 AFM 640
>gi|51092069|gb|AAT94448.1| RE39088p [Drosophila melanogaster]
Length = 563
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 123 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 179
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 180 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 239
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E SG+ V++ + P V+ ER + + G+ A + ++
Sbjct: 240 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMIL 280
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 123 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 180
Query: 231 LKALEAVVGHLRK 243
+ +E ++ +R+
Sbjct: 181 MVVMEFIMDKIRE 193
>gi|426340777|ref|XP_004034304.1| PREDICTED: poly(rC)-binding protein 4 isoform 4 [Gorilla gorilla
gorilla]
Length = 360
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 23/126 (18%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQEN 197
K I+E+
Sbjct: 125 KEIRES 130
>gi|161078112|ref|NP_001036692.1| pasilla, isoform F [Drosophila melanogaster]
gi|164449760|ref|NP_731351.3| pasilla, isoform H [Drosophila melanogaster]
gi|164449762|ref|NP_731352.3| pasilla, isoform G [Drosophila melanogaster]
gi|320542556|ref|NP_001189199.1| pasilla, isoform N [Drosophila melanogaster]
gi|320542564|ref|NP_001189203.1| pasilla, isoform O [Drosophila melanogaster]
gi|11526806|gb|AAG36789.1|AF220422_1 PASILLA splice variant 3 [Drosophila melanogaster]
gi|158030195|gb|AAF54377.3| pasilla, isoform F [Drosophila melanogaster]
gi|158030196|gb|AAN13425.2| pasilla, isoform G [Drosophila melanogaster]
gi|158030197|gb|AAN13424.2| pasilla, isoform H [Drosophila melanogaster]
gi|318068743|gb|ADV37290.1| pasilla, isoform N [Drosophila melanogaster]
gi|318068747|gb|ADV37294.1| pasilla, isoform O [Drosophila melanogaster]
Length = 572
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 124
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 125 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 184
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 185 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKI 228
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 125
Query: 231 LKALEAVVGHLRK 243
+ +E ++ +R+
Sbjct: 126 MVVMEFIMDKIRE 138
>gi|161078122|ref|NP_001036695.1| pasilla, isoform K [Drosophila melanogaster]
gi|320542560|ref|NP_001189201.1| pasilla, isoform P [Drosophila melanogaster]
gi|320542562|ref|NP_001189202.1| pasilla, isoform M [Drosophila melanogaster]
gi|113194763|gb|ABI31152.1| pasilla, isoform K [Drosophila melanogaster]
gi|318068745|gb|ADV37292.1| pasilla, isoform P [Drosophila melanogaster]
gi|318068746|gb|ADV37293.1| pasilla, isoform M [Drosophila melanogaster]
Length = 550
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 46 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 102
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 103 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 162
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 163 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKI 206
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 155 PENDVDAKA---SGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAP 211
PEN+ ++ SG +++LVP+ + +IGK G I S+Q+++GA V++ + +
Sbjct: 27 PENEQTKRSHFSSGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD-- 84
Query: 212 FYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
FY ER+ + G ++ +E ++ +R+
Sbjct: 85 FYPGTTERVCLITGSTEAIMVVMEFIMDKIRE 116
>gi|24645370|ref|NP_731356.1| pasilla, isoform C [Drosophila melanogaster]
gi|11526808|gb|AAG36790.1|AF220423_1 PASILLA splice variant 4 [Drosophila melanogaster]
gi|23170800|gb|AAF54378.2| pasilla, isoform C [Drosophila melanogaster]
Length = 561
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 57 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 113
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 114 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 173
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 174 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKI 217
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 167 AFC----SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
+FC +++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+
Sbjct: 49 SFCETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCL 106
Query: 223 MQGEAAKVLKALEAVVGHLRK 243
+ G ++ +E ++ +R+
Sbjct: 107 ITGSTEAIMVVMEFIMDKIRE 127
>gi|291575150|ref|NP_065151.2| poly(rC)-binding protein 4 isoform a [Homo sapiens]
gi|114587204|ref|XP_001170813.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pan troglodytes]
gi|16877720|gb|AAH17098.1| PCBP4 protein [Homo sapiens]
gi|119585570|gb|EAW65166.1| poly(rC) binding protein 4, isoform CRA_b [Homo sapiens]
Length = 360
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 23/126 (18%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQEN 197
K I+E+
Sbjct: 125 KEIRES 130
>gi|444519891|gb|ELV12903.1| Poly(rC)-binding protein 3 [Tupaia chinensis]
Length = 300
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 130/307 (42%), Gaps = 47/307 (15%)
Query: 109 ARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDV-----DAKA 163
ARI + +G + P+RIV I+G DA + F ++ E D+ ++ A
Sbjct: 26 ARINISEG--NCPERIVTITGPT----------DAIFKAFAMIAYKFEEDIINSMSNSPA 73
Query: 164 SGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
+ ++RL+VP++Q +LIGK GS IK I+E++GA V+V + D P ER V +
Sbjct: 74 TSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP---NSTERAVTI 129
Query: 224 QGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQS 283
G +++ ++ + + + +P K + + +A + Q
Sbjct: 130 SGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPV-------IFAGGQAYTIQGQY 182
Query: 284 AISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQI 343
AI T+ L +++ P P L + G + P +
Sbjct: 183 AIP-HPDQLTKLHQLAMQQTP----------------FPPLGQTNPAFPGLDASPPAS-- 223
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T + IP IIG GT I IR+ SGA I + + E + I GT + + LAQ
Sbjct: 224 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 283
Query: 404 QLIQEYM 410
LI +
Sbjct: 284 YLINARL 290
>gi|410951301|ref|XP_003982336.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Felis catus]
Length = 360
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 29/179 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQEN--SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA----LEAVVGHLRKF 244
K I+E+ GA++ + + + +QG+ V A L+ + GH F
Sbjct: 125 KEIRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPF 183
>gi|395506297|ref|XP_003757471.1| PREDICTED: far upstream element-binding protein 3 [Sarcophilus
harrisii]
Length = 623
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 92/399 (23%), Positives = 171/399 (42%), Gaps = 53/399 (13%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 135 VPDKMVGFIIGRGGEQISRIQAESGCKIQIAPESSGIPERPCVLTGT--PES-IEQAKRL 191
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P NDVD + +L+P+++ +IGK G IK +QE +G
Sbjct: 192 LGQIVDRCRNGPGFHNDVDGNNT-----IQEILIPASKVGLVIGKGGETIKQLQERTG-- 244
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNAS 261
V+++ + P D + + + G+ KV +A E V+ +R+ DQ +++
Sbjct: 245 VKMIMIQDGPLPTGAD-KPLRITGDPFKVQQAREMVLEIIRE--KDQADFRGVRSDFSSR 301
Query: 262 I---SQERQVETWA--------DKSSLHAATQSAISTEYTPSTRRESLFLEREPQL---- 306
+ S E V +A + + + ++ P + + ER Q+
Sbjct: 302 MGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD---DGISPERVAQVMGLP 358
Query: 307 ----ESRYRLSGISIYGQD----PALSTIRSSALGRASGPI-----VTQITQTMQIPISY 353
+ + +S + + Q+ +LS R GR+ + + ++T T +P
Sbjct: 359 ERCQHAAHVISDLILTAQERDGFGSLSVPRGRGRGRSDWSVGAPGGLQEVTYT--VPADK 416
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+IG GG +I++I + SGA + +Q + P I+G Q++LA+ LI E +
Sbjct: 417 CGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPSVRIFTIRGIPQQIELARHLIDEKV 476
Query: 411 NNHKESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQP 449
S+GQ P+ P +++P S P
Sbjct: 477 GGTNMGAPGSFGQSPFNQAPATPH--QNTFPPRSSGCFP 513
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAPVSP 139
+++P KVG +IG+ GE IK+ E T + I + DGP+ + D+ + I+G V
Sbjct: 218 ILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPLPTGADKPLRITGD---PFKVQQ 274
Query: 140 AMDAAVRVFKR-----VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
A + + + + G+ +D ++ G S+ + VP +IG+ G +IK I
Sbjct: 275 AREMVLEIIREKDQADFRGV-RSDFSSRMGGG---SIEVSVPRFAVGIVIGRNGEMIKKI 330
Query: 195 QENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKAL 234
Q ++G ++ D +P V + + E AA V+ L
Sbjct: 331 QNDAGVRIQFKPDDGISPERVAQVMGLPERCQHAAHVISDL 371
>gi|301767224|ref|XP_002919001.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
Length = 360
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 23/126 (18%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A A+G ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQEN 197
K I+E+
Sbjct: 125 KEIRES 130
>gi|24645368|ref|NP_731355.1| pasilla, isoform D [Drosophila melanogaster]
gi|23170799|gb|AAN13428.1| pasilla, isoform D [Drosophila melanogaster]
Length = 583
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 79 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 135
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 136 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 195
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 196 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKI 239
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 79 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 136
Query: 231 LKALEAVVGHLRK 243
+ +E ++ +R+
Sbjct: 137 MVVMEFIMDKIRE 149
>gi|358368755|dbj|GAA85371.1| KH domain RNA-binding protein [Aspergillus kawachii IFO 4308]
Length = 360
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 135/317 (42%), Gaps = 58/317 (18%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P++
Sbjct: 45 LRAIVSSKEAGIIIGKSGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTG------PLNG 98
Query: 140 AMDAAVRVFK-RVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A V K + G P+ + S VRLL+ Q +IG+QG IK IQ+ S
Sbjct: 99 TARAYALVAKGLLEGAPQMGMGGIVSNNGTHPVRLLISHNQMGTIIGRQGLKIKHIQDAS 158
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E T ERIVE+QG + +E V + K L+D Y
Sbjct: 159 G--VRMVAQKEMLPQST--ERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTGTILY 210
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESR-YRLSGISI 317
N A ++++ T + ST +S+ SR Y +G
Sbjct: 211 N-------------------PAVRASVGTTPSTSTMNQSVG----NGYNSRPYNRTG--- 244
Query: 318 YGQDPALSTIRSSALGRASG--------PIVTQI-----TQTMQIPISYAEDIIGVGGTS 364
+ A + +S GR S P+VT+ TQ + IP IIG GG+
Sbjct: 245 ---NGADFSDQSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGSK 301
Query: 365 IENIRRTSGAIITVQES 381
I IRR+SGA I++ ++
Sbjct: 302 ITEIRRSSGARISIAKA 318
>gi|242019024|ref|XP_002429966.1| polyrC binding protein, putative [Pediculus humanus corporis]
gi|212515021|gb|EEB17228.1| polyrC binding protein, putative [Pediculus humanus corporis]
Length = 319
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEP-EA 135
+++VP + G+IIG+ GE I + +DT AR+K+ P +R+ L++G E A
Sbjct: 70 LKILVPCIAAGAIIGKGGETIAQLQKDTGARMKMSKANDFYPCTTERVCLVTGSVEAIMA 129
Query: 136 PVSPAMDAAVRVFKRVS-GLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+S MD S + +D ++K S V++L+P++ A +IGK G+ IK +
Sbjct: 130 VMSFIMDKIKEKPDLTSKAINTSDTESKLSADRSKQVKILIPNSTAGMIIGKGGNYIKQM 189
Query: 195 QENSGASVRVLSADEAPFYVTEDERIV----EMQGEAAKVLKALEAVV 238
+E SG+ ++ LS + ER V EM+ +LK L VV
Sbjct: 190 KEESGSYIQ-LSQKSNDASLQLQERCVTIIGEMENNKKAILKLLAKVV 236
>gi|402587695|gb|EJW81630.1| KH domain-containing protein [Wuchereria bancrofti]
Length = 273
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 110/257 (42%), Gaps = 33/257 (12%)
Query: 156 ENDVDAKASGAAFCS--VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFY 213
++D D + C +++LV + A +IG+ GS IK ++E +GA ++V S AP
Sbjct: 31 DDDHDRRMKKTDRCDSEMKVLVHESHAGAVIGRGGSRIKELREKTGAQLKVFSR-CAP-- 87
Query: 214 VTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQER--QVETW 271
ERIV + GE K++ + ++ L++ + V P Y+ I + V
Sbjct: 88 -QSTERIVLLNGEVEKIIDCINIIIDVLKEIPIKGPVRPYDPMYYDPDIISDYGGYVPDR 146
Query: 272 ADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSA 331
S + S+ PS R P + RY G+
Sbjct: 147 NFISRVGRGRDFGFSSGIIPS---------RYPGRDDRY--GGMR-------------DM 182
Query: 332 LGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVE 391
+GR S PI T + IP IIG GG+ I +R SGA I V+ R + +
Sbjct: 183 MGRYS-PIPAMQTTQVTIPDELGGAIIGKGGSRINRVREESGAQIEVEPHRDNGGDRIIT 241
Query: 392 IKGTSSQVQLAQQLIQE 408
I GT Q+Q AQ L+Q+
Sbjct: 242 ISGTREQIQAAQYLLQQ 258
>gi|327307466|ref|XP_003238424.1| KH domain RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326458680|gb|EGD84133.1| KH domain RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 367
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 141/341 (41%), Gaps = 42/341 (12%)
Query: 45 EHTTESDSALPQSTGPDAAAVPE-EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKT 103
E ES S + + P+A A P+ E+++ R IV + G IIG+ G+ +
Sbjct: 16 ETLAESFSRVSVNDQPEAEAPPKTEEEYA--QSMLTLRAIVSSKEAGVIIGKAGKNVADL 73
Query: 104 CEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKA 163
++T + V DR++ ++G P S A + + G P+ +
Sbjct: 74 RDETGVKAGVSKVVQGVHDRVLTVTG---PLQGTSKAYSIVAKSL--LEGAPQMGMGGVV 128
Query: 164 SGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
SVRLL+ Q +IG+QG IK IQ+ SG VR+++ E ERIVE+
Sbjct: 129 QNNGTHSVRLLISHNQMGTIIGRQGLKIKYIQDASG--VRMVAQKE--MLPQSTERIVEV 184
Query: 224 QGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQS 283
QG + +E + + K L+D YN ++ R + T
Sbjct: 185 QGTP----EGIEKAIWEIGKCLIDDWQRGTGTVLYNPAV---RASVGSSSGQGSVTGTNP 237
Query: 284 AISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASG-PIVTQ 342
+ Y S+R S R + + P+ + R + G P+VT+
Sbjct: 238 S----YGGSSR-------------SYNRTGNGADFSDHPSSYSRRGNNDNPNRGIPLVTE 280
Query: 343 I-----TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
TQ + IP IIG GGT I IRR+SGA I++
Sbjct: 281 DGEEVQTQNISIPSDMVGCIIGRGGTKISEIRRSSGARISI 321
>gi|25012554|gb|AAN71378.1| RE36563p, partial [Drosophila melanogaster]
Length = 605
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 101 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 157
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 158 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 217
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 218 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKI 261
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 167 AFC----SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
+FC +++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+
Sbjct: 93 SFCETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCL 150
Query: 223 MQGEAAKVLKALEAVVGHLRK 243
+ G ++ +E ++ +R+
Sbjct: 151 ITGSTEAIMVVMEFIMDKIRE 171
>gi|383858339|ref|XP_003704659.1| PREDICTED: far upstream element-binding protein 1-like [Megachile
rotundata]
Length = 736
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 92/406 (22%), Positives = 164/406 (40%), Gaps = 51/406 (12%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS-PDRIVLISGKEEPE 134
G C + VP VG IIGR GE I + +T +I++ P S P+R+ ++G E
Sbjct: 104 GICNEDIRVPDKMVGLIIGRGGEQITRLQSETGCKIQMA--PESGLPERVCTLTGSREAV 161
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAF--CSVRLLVPSTQAINLIGKQGSLIK 192
+ + V R G+ + ++ + G V +++P + +IGK G IK
Sbjct: 162 NRAKELVLSIVNQRSRTEGIGDMNMSGSSGGMMGHPGFVEIMIPGPKVGLIIGKGGETIK 221
Query: 193 SIQENSGASVRVL-----SADEAPFYVTEDERIVEMQGEAA-KVLKALEAVVGHLRKFLV 246
+QE SGA + V+ E P +T D + VE + +++ E + H
Sbjct: 222 QLQEKSGAKMVVIQEGPSQEQEKPLRITGDPQKVEYAKQLVYELIAEKEMQMFHRGARGN 281
Query: 247 DQGVLPLFEKTYNASISQERQVETWADKSSL------------------HAATQSAISTE 288
D+ + ++N VE ++++ A Q E
Sbjct: 282 DRSGSYSNDSSFNHGSGTTDGVEVLVPRAAVGVVIGKGGDMIKKIQAETGARVQFQQGRE 341
Query: 289 YTPSTRRESLFLEREPQLESRYRLSGI--SIYGQDPALSTI------RSSALG------- 333
P R+ L + + + R R+ + S+ +D S + R + G
Sbjct: 342 DGPGDRKCILSGKHQAVEQVRQRIQELIDSVMRRDDGRSPMGTRSGPRGNGFGNNRNPNE 401
Query: 334 ------RASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV-QESRGLPD 386
R GP+ +I T +P S IIG GG +I+ I + +GA + + ++ +
Sbjct: 402 YGGWDRRQGGPMQDKIETTFTVPSSKCGIIIGKGGETIKQINQQTGAHCELDRRNQSNEN 461
Query: 387 EITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSY 432
E I+G QV+ A+++ E + + + S Q GY P++
Sbjct: 462 EKIFIIRGNPEQVEHAKRIFSEKLGMAPANTSFSGTQGAIGYNPTW 507
>gi|312380039|gb|EFR26147.1| hypothetical protein AND_07973 [Anopheles darlingi]
Length = 552
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 11/152 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
F+ +VP + G+IIG+ GE I +D AR+K+ D + +R+ LISG +
Sbjct: 43 FKTLVPSVAAGAIIGKGGETIASLQKDAGARVKMSKSHDFYPGTTERVCLISGTVDG--- 99
Query: 137 VSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ +D + + + + + DAK + V++LVP++ A +IGK G+ IK I
Sbjct: 100 ILTVLDFIIDKIREKPDMTKALTEADAKQAQERDKQVKILVPNSTAGMIIGKAGAYIKQI 159
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGE 226
+E SG+ V++ + P +T ER + + GE
Sbjct: 160 KEESGSYVQI---SQKPKDLTLQERCITIIGE 188
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVL 231
+ LVPS A +IGK G I S+Q+++GA V++ + + FY ER+ + G +L
Sbjct: 44 KTLVPSVAAGAIIGKGGETIASLQKDAGARVKMSKSHD--FYPGTTERVCLISGTVDGIL 101
Query: 232 KALEAVVGHLRK 243
L+ ++ +R+
Sbjct: 102 TVLDFIIDKIRE 113
>gi|24645366|ref|NP_731354.1| pasilla, isoform B [Drosophila melanogaster]
gi|11526802|gb|AAG36787.1|AF220420_1 PASILLA splice variant 1 [Drosophila melanogaster]
gi|11526804|gb|AAG36788.1|AF220421_1 PASILLA splice variant 2 [Drosophila melanogaster]
gi|23170798|gb|AAN13427.1| pasilla, isoform B [Drosophila melanogaster]
Length = 475
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 35 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 91
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 92 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 151
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E SG+ V++ + P V+ ER + + G+ A + ++
Sbjct: 152 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMIL 192
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 35 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 92
Query: 231 LKALEAVVGHLRK 243
+ +E ++ +R+
Sbjct: 93 MVVMEFIMDKIRE 105
>gi|390177068|ref|XP_003736271.1| GA30025, isoform E [Drosophila pseudoobscura pseudoobscura]
gi|388858895|gb|EIM52344.1| GA30025, isoform E [Drosophila pseudoobscura pseudoobscura]
Length = 548
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 46 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 102
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDA--KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ +D + + L +DA K + V++LVP++ A +IGK G+ IK I
Sbjct: 103 IMVVLDFIMDKIREKPDLTTKIIDAESKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 162
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E+SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 163 KEDSGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 206
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 155 PENDVDAKA---SGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAP 211
PEN+ ++ SG +++LVP+ + +IGK G I S+Q+++GA V++ + +
Sbjct: 27 PENEQTKRSHFSSGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD-- 84
Query: 212 FYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
FY ER+ + G ++ L+ ++ +R+
Sbjct: 85 FYPGTTERVCLITGSTEAIMVVLDFIMDKIRE 116
>gi|125773159|ref|XP_001357838.1| GA30025, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|54637571|gb|EAL26973.1| GA30025, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 570
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 124
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDA--KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ +D + + L +DA K + V++LVP++ A +IGK G+ IK I
Sbjct: 125 IMVVLDFIMDKIREKPDLTTKIIDAESKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 184
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E+SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 185 KEDSGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 228
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 125
Query: 231 LKALEAVVGHLRK 243
+ L+ ++ +R+
Sbjct: 126 MVVLDFIMDKIRE 138
>gi|338714774|ref|XP_003363150.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Equus
caballus]
Length = 360
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 29/179 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM++ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITG---------- 67
Query: 140 AMDAAVRVFKRVS----GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLI 191
+ VF VS L E+ A +G + ++RL++P++Q +LIGK G+ I
Sbjct: 68 ---STAAVFHAVSMIAFKLDEDLCAAPTNGGSVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 192 KSIQEN--SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA----LEAVVGHLRKF 244
K I+E+ GA++ + + + +QG+ V A L+ + GH F
Sbjct: 125 KEIRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTSAEVTKLQQLSGHAVPF 183
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 120/316 (37%), Gaps = 59/316 (18%)
Query: 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAK 229
++R+L+ + ++IGK+G +K I+E S A + + S P ERI + G A
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP------ERITTITGSTAA 71
Query: 230 VLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQE----RQVETWADKSSLHAATQSAI 285
V A+ + F +D+ + T S+S+ R V + SL + I
Sbjct: 72 VFHAVSMIA-----FKLDEDLC--AAPTNGGSVSRPPVTLRLVIPASQCGSLIGKAGTKI 124
Query: 286 -----------STEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGR 334
+ Y PS ++ L G S+ GQ A+++ + L +
Sbjct: 125 KEIRESPPKGATIPYHPSLSLGTVLLSAN---------QGFSVQGQYGAVTSAEVTKLQQ 175
Query: 335 ASG---------------PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ 379
SG P +Q +P +IG G+ I IR+ SGA I +
Sbjct: 176 LSGHAVPFASPSMVPGLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIG 235
Query: 380 ESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYPQLGNSS 439
E V I G+ + LAQ LI + K + + G T + S
Sbjct: 236 NQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSTPTDLPAPF------S 289
Query: 440 YPSSSLSTQPYGGYGS 455
P ++L T P G G+
Sbjct: 290 PPLTALPTAPPGLLGT 305
>gi|256089056|ref|XP_002580633.1| soluble guanylate cyclase gcy [Schistosoma mansoni]
Length = 1553
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 18/167 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
F+++VP + G+IIG+KGE I+ T AR+K+ P +R+ LI G E
Sbjct: 6 FKILVPNVAAGAIIGKKGEAIETIKRQTGARLKMSRADDFYPGTTERVCLIIGTLE---- 61
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFC-----SVRLLVPSTQAINLIGKQGSLI 191
+ V ++S P+N +G C V++LVP + A +IGK G+ I
Sbjct: 62 --ACIQLHDYVMAKISKRPQNIAIITPTGVN-CMERHKQVKILVPDSTAGIIIGKFGNFI 118
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+ I+E S A ++V + P + ER + + GE + KA+E ++
Sbjct: 119 ERIKEESNAFIQV---SQRPKDIRLFERCIVITGELKERRKAVEMIL 162
>gi|256079872|ref|XP_002576208.1| rna-binding protein related [Schistosoma mansoni]
gi|353231011|emb|CCD77429.1| rna-binding protein related [Schistosoma mansoni]
Length = 666
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 24/174 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G+ F+++VP + G+IIG+ GE I + T A++K+ P +R+ LI G
Sbjct: 41 GNVHFKILVPSIAAGAIIGKGGEAITEIQNQTSAKVKMSKANAFYPGTTERVCLIVG--- 97
Query: 133 PEAPVSPAMDAAVRVFKRVS--------GLPENDVDAKASGAAFCSVRLLVPSTQAINLI 184
+++ +RVF+ +S +P+ + + V++LVP++ A +I
Sbjct: 98 -------TIESILRVFQYISEKIYEKPESVPKTGCEGRVLTERHKQVKILVPNSTAGMII 150
Query: 185 GKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
GK GS IK +++ +G ++V + + ER V + GE ++ A+ ++
Sbjct: 151 GKGGSFIKELKDTTGVFIQV---SQKSKELNLAERCVTVAGELSQTRDAIALIL 201
>gi|119498177|ref|XP_001265846.1| KH domain RNA-binding protein [Neosartorya fischeri NRRL 181]
gi|119414010|gb|EAW23949.1| KH domain RNA-binding protein [Neosartorya fischeri NRRL 181]
Length = 360
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 125/316 (39%), Gaps = 57/316 (18%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P+
Sbjct: 45 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTG------PLQG 98
Query: 140 AMDAAVRVFK-RVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A V K + G P+ + + VRLL+ Q +IG+QG IK IQ+ S
Sbjct: 99 TARAYALVAKGLLEGAPQMGMGGIVNNNGTHPVRLLISHNQMGTIIGRQGLKIKHIQDAS 158
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E ERIVE+QG + +E V + K L+D Y
Sbjct: 159 G--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTGTILY 210
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
N ++ T + SS+ S P R
Sbjct: 211 NPAVRASVGGSTSMNTSSVGNGYNS------RPYNR-----------------------T 241
Query: 319 GQDPALSTIRSSALGRASG--------PIVTQI-----TQTMQIPISYAEDIIGVGGTSI 365
G S +S GR S P+VT+ TQ + IP IIG GG+ I
Sbjct: 242 GNGADFSDGQSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGSKI 301
Query: 366 ENIRRTSGAIITVQES 381
IRR+SGA I++ ++
Sbjct: 302 TEIRRSSGARISIAKA 317
>gi|195158519|ref|XP_002020133.1| GL13824 [Drosophila persimilis]
gi|194116902|gb|EDW38945.1| GL13824 [Drosophila persimilis]
Length = 554
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 74 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 130
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDA--KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ +D + + L +DA K + V++LVP++ A +IGK G+ IK I
Sbjct: 131 IMVVLDFIMDKIREKPDLTTKIIDAESKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 190
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E+SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 191 KEDSGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 234
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 74 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 131
Query: 231 LKALEAVVGHLRK 243
+ L+ ++ +R+
Sbjct: 132 MVVLDFIMDKIRE 144
>gi|344283688|ref|XP_003413603.1| PREDICTED: poly(rC)-binding protein 1-like [Loxodonta africana]
Length = 438
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 21/151 (13%)
Query: 93 IGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVS 152
+GRKG +K+ E++ ARI + +G + P+RI+ ++G +A + F +
Sbjct: 111 LGRKGTSVKRIREESGARINISEG--NCPERIITLTGP----------TNAIFKAFAMII 158
Query: 153 GLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA 207
E D+++ + + S +RL+VP+TQ +LIGK G IK I+E++GA V+V +
Sbjct: 159 DKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AG 217
Query: 208 DEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
D P ER + + G V + ++ +
Sbjct: 218 DMLP---NSTERAITIAGVPQSVTECVKQIC 245
>gi|390177066|ref|XP_003736270.1| GA30025, isoform D [Drosophila pseudoobscura pseudoobscura]
gi|388858894|gb|EIM52343.1| GA30025, isoform D [Drosophila pseudoobscura pseudoobscura]
Length = 576
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 74 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 130
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDA--KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ +D + + L +DA K + V++LVP++ A +IGK G+ IK I
Sbjct: 131 IMVVLDFIMDKIREKPDLTTKIIDAESKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 190
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E+SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 191 KEDSGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 234
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 74 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 131
Query: 231 LKALEAVVGHLRK 243
+ L+ ++ +R+
Sbjct: 132 MVVLDFIMDKIRE 144
>gi|189239335|ref|XP_973573.2| PREDICTED: similar to pasilla CG16765-PK [Tribolium castaneum]
Length = 535
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLIS 128
PG G F+++VP + G+IIG+ GE I + ++T AR+K+ D + +R+ LI+
Sbjct: 39 PGGDGTYHFKVLVPSVAAGAIIGKGGETIAQLQKETGARVKMSKSHDFYPGTTERVCLIT 98
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
G + V+ + +R ++ P + ++K V++LVP++ A +IGK G
Sbjct: 99 GSVDAIMVVADFIADKIREKPDLTK-PLVETESKLMQDRDKQVKILVPNSTAGMIIGKAG 157
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+ IK I+E SG+ V++ + V+ ER + + GE + +A + ++ +
Sbjct: 158 NYIKQIKETSGSYVQI---SQKAKDVSLQERCITVIGEKEQNRQACQMILAKI 207
>gi|161078120|ref|NP_001036697.1| pasilla, isoform J [Drosophila melanogaster]
gi|19527741|gb|AAL89985.1| AT03366p [Drosophila melanogaster]
gi|113194765|gb|ABI31154.1| pasilla, isoform J [Drosophila melanogaster]
Length = 539
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 35 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 91
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 92 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 151
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 152 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKI 195
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 35 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 92
Query: 231 LKALEAVVGHLRK 243
+ +E ++ +R+
Sbjct: 93 MVVMEFIMDKIRE 105
>gi|442618212|ref|NP_001262414.1| pasilla, isoform Q [Drosophila melanogaster]
gi|440217246|gb|AGB95796.1| pasilla, isoform Q [Drosophila melanogaster]
Length = 517
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 13 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 69
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L D D+K + V++LVP++ A +IGK G+ IK I
Sbjct: 70 IMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 129
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 130 KEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKI 173
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 13 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 70
Query: 231 LKALEAVVGHLRK 243
+ +E ++ +R+
Sbjct: 71 MVVMEFIMDKIRE 83
>gi|296477630|tpg|DAA19745.1| TPA: neuro-oncological ventral antigen 2-like [Bos taurus]
Length = 640
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 179 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 238
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 239 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 291
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 292 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 345
>gi|402906002|ref|XP_003915796.1| PREDICTED: RNA-binding protein Nova-2 [Papio anubis]
Length = 618
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 157 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 216
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 217 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 269
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 270 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 323
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 157 NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTE 216
N ++ G F +++L+PS A ++IGK G I +Q+ +GA++++ + + FY
Sbjct: 149 NTINLLEEGEYF--LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD--FYPGT 204
Query: 217 DERIVEMQGEAAKVLKALEAV 237
ER+ +QG A +AL AV
Sbjct: 205 TERVCLVQGTA----EALNAV 221
>gi|322780737|gb|EFZ09994.1| hypothetical protein SINV_05815 [Solenopsis invicta]
Length = 483
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 7/172 (4%)
Query: 71 WPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLI 127
+ G G +++VP + G+IIG+ G+ I + +DT AR+K+ D + +R+ LI
Sbjct: 7 FVGGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLI 66
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA-KASGAAFCSVRLLVPSTQAINLIGK 186
+G + V + +R ++ D D+ KA+ V++LVP++ A +IGK
Sbjct: 67 TGTVDAIMEVMEFIMDKIREKPDLTSKTTVDFDSGKATAERDKQVKILVPNSTAGMIIGK 126
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
G+ IK I+E SG+ V++ + ++ ER + + GE +AL ++
Sbjct: 127 AGNYIKQIKEESGSYVQI---SQKAKDLSLQERCITVIGEKENNHRALHMIL 175
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP A +IGK G I +Q+++GA V++ + + FY ER+ + G +
Sbjct: 16 LKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHD--FYPGTTERVCLITGTVDAI 73
Query: 231 LKALEAVVGHLRK 243
++ +E ++ +R+
Sbjct: 74 MEVMEFIMDKIRE 86
>gi|390177064|ref|XP_003736269.1| GA30025, isoform C [Drosophila pseudoobscura pseudoobscura]
gi|388858893|gb|EIM52342.1| GA30025, isoform C [Drosophila pseudoobscura pseudoobscura]
Length = 554
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 52 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 108
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDA--KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ +D + + L +DA K + V++LVP++ A +IGK G+ IK I
Sbjct: 109 IMVVLDFIMDKIREKPDLTTKIIDAESKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 168
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E+SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 169 KEDSGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 212
>gi|315055291|ref|XP_003177020.1| hypothetical protein MGYG_01105 [Arthroderma gypseum CBS 118893]
gi|311338866|gb|EFQ98068.1| hypothetical protein MGYG_01105 [Arthroderma gypseum CBS 118893]
Length = 367
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 142/345 (41%), Gaps = 46/345 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P S
Sbjct: 50 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG---PLQGTSK 106
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + + G P+ + SVRLL+ Q +IG+QG IK IQ+ SG
Sbjct: 107 AYSIVAKSL--LEGAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQGLKIKYIQDASG 164
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
VR+++ E ERIVE+QG + +E + + K L+D YN
Sbjct: 165 --VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAIWEIGKCLIDDWQRGTGTVLYN 216
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
++ V + + + + S Y S+R S R + +
Sbjct: 217 PAV--RASVGSGPGQGPVAGSNPS-----YGGSSR-------------SYNRTGNGADFS 256
Query: 320 QDPALSTIRSSALGRASG-PIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
P R + G P+VT+ TQ + IP IIG GGT I IRR+SG
Sbjct: 257 DHPGSYNRRGNNDNPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGTKISEIRRSSG 316
Query: 374 AIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
A I++ ++ P + T E I G++ + A L+ E + K
Sbjct: 317 ARISIAKA---PHDDTGERMFTIMGSAQANEKALYLLYENLEAEK 358
>gi|170578788|ref|XP_001894545.1| KH domain containing protein [Brugia malayi]
gi|158598797|gb|EDP36609.1| KH domain containing protein [Brugia malayi]
Length = 377
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 109/244 (44%), Gaps = 41/244 (16%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+R+LV S+ A +IG+QGS IK ++E G ++V + + P TE R+V ++G K+
Sbjct: 154 LRVLVHSSHAGAVIGRQGSKIKEMKEELGVQMKVFA--QCPPQSTE--RVVSIKGAPDKI 209
Query: 231 LKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEY- 289
L + ++ L++ + +GV +E + + S+EY
Sbjct: 210 LACVNHIMNMLKEIPI-KGVTKPYESMF----------------------YDPSYSSEYG 246
Query: 290 -TPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPI-VTQITQTM 347
P R + R P + Y G S Q + + AL GP TQ+T
Sbjct: 247 GYPPDRNYRGPMIRGPMAVTSYGNYGRSFQRQIGGRGPLSAVALPPYMGPEESTQVT--- 303
Query: 348 QIPISYAEDIIGVGGTSIENIRRTSGAIITV---QESRGLPDEITVEIKGTSSQVQLAQQ 404
IP IIG GG I +R SGA I V QES E + I GTS+ +Q AQ
Sbjct: 304 -IPNELGGTIIGKGGERINRVREESGAQIVVGPQQES----GERIITITGTSTAIQTAQY 358
Query: 405 LIQE 408
L+Q+
Sbjct: 359 LLQQ 362
>gi|194741910|ref|XP_001953430.1| GF17214 [Drosophila ananassae]
gi|190626489|gb|EDV42013.1| GF17214 [Drosophila ananassae]
Length = 532
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 124
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDA--KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ +D + + L +DA K + V++LVP++ A +IGK G+ IK I
Sbjct: 125 IMFVLDFIMDKIREKPDLTTKIIDAESKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 184
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 185 KEESGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 228
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 125
Query: 231 LKALEAVVGHLRK 243
+ L+ ++ +R+
Sbjct: 126 MFVLDFIMDKIRE 138
>gi|425769369|gb|EKV07864.1| hypothetical protein PDIP_71440 [Penicillium digitatum Pd1]
gi|425770994|gb|EKV09451.1| hypothetical protein PDIG_62050 [Penicillium digitatum PHI26]
Length = 364
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 130/307 (42%), Gaps = 37/307 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G+ S
Sbjct: 47 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGQLR-----SL 101
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A A+ + G P+ + S +RLL+ Q +IG+QG IK IQ+ SG
Sbjct: 102 ARAYAIVAKGLLEGAPQMGMGGIVSNNGTHPIRLLISHNQMGTIIGRQGLKIKHIQDASG 161
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
VR+++ E T ERIVE+QG + +E + + K L+D YN
Sbjct: 162 --VRMVAQKEMLPQST--ERIVEVQGTP----EGIEKAIWEIGKCLLDDWQRGTGTVLYN 213
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
++ + + L++ + + ++R +Y +G
Sbjct: 214 PAVR-----ASLSGSQPLNSNPPAGNGYQNNANSR--------------QYNRTGNGADF 254
Query: 320 QDPALSTIRSSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
D + + +S G P VT+ TQ + IP IIG GGT I IRR+SGA
Sbjct: 255 SDGSYNRRSNSDAGNRGYPQVTEDGEEIQTQNISIPADMVGCIIGRGGTKITEIRRSSGA 314
Query: 375 IITVQES 381
I++ ++
Sbjct: 315 RISIAKA 321
>gi|2673961|gb|AAB88661.1| astrocytic NOVA-like RNA-binding protein [Homo sapiens]
Length = 498
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G
Sbjct: 34 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 93
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPST 178
E V + VR + PE N AK + +L+VP++
Sbjct: 94 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNS 146
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A +IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 147 TAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 203
>gi|224097170|ref|XP_002310862.1| predicted protein [Populus trichocarpa]
gi|222853765|gb|EEE91312.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 9/177 (5%)
Query: 52 SALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARI 111
S LP T + A + K P FRMI G IIG G +++ T A I
Sbjct: 58 SLLP--TYSENIATDGDHKKPNEQSQVQFRMICSHGAAGRIIGTGGSVVRALQNQTGASI 115
Query: 112 KVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVD-AKASGA---A 167
+S DR+V +S E E+ SPA +A + VF R E+D++ A++ G
Sbjct: 116 IFARPITNSDDRLVTVSALENLESSHSPAQNALLLVFARS---IEHDIERARSLGLIEEI 172
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
+ LL+PS + LIG+ G + + E +GA ++++ D+ ++++ +V++Q
Sbjct: 173 TVTATLLLPSNKVYCLIGRGGRVDSEMIETTGADIQIMQGDQFFDLASKNDAVVQVQ 229
>gi|195330414|ref|XP_002031899.1| GM23807 [Drosophila sechellia]
gi|194120842|gb|EDW42885.1| GM23807 [Drosophila sechellia]
Length = 572
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 124
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L DV++K + V++LVP++ A +IGK G+ IK I
Sbjct: 125 IMVVMEFIMDKIREKPDLTNKIVDVESKQTQERDRQVKILVPNSTAGMIIGKGGAFIKQI 184
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 185 KEESGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 228
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 125
Query: 231 LKALEAVVGHLRK 243
+ +E ++ +R+
Sbjct: 126 MVVMEFIMDKIRE 138
>gi|335289843|ref|XP_003127279.2| PREDICTED: RNA-binding protein Nova-2 [Sus scrofa]
Length = 492
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G
Sbjct: 28 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 87
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPST 178
E V + VR + PE N AK + +L+VP++
Sbjct: 88 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNS 140
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A +IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 141 TAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 197
>gi|334311844|ref|XP_001369630.2| PREDICTED: far upstream element-binding protein 3 [Monodelphis
domestica]
Length = 574
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 169/398 (42%), Gaps = 51/398 (12%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 86 VPDKMVGFIIGRGGEQISRIQAESGCKIQIAPESSGIPERPCVLTGT--PES-IEQAKRL 142
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P NDVD + +L+P+++ +IGK G IK +QE +G
Sbjct: 143 LGQIVDRCRNGPGFHNDVDGNNT-----IQEILIPASKVGLVIGKGGETIKQLQERTG-- 195
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR-KFLVD-QGVLPLFEKTYN 259
V+++ + P D + + + G+ KV +A E V+ +R K D +GV F
Sbjct: 196 VKMIMIQDGPLPTGAD-KPLRITGDPFKVQQAREMVLEIIREKDQADFRGVRSDFSSRMG 254
Query: 260 ASISQERQVETWA--------DKSSLHAATQSAISTEYTPSTRRESLFLEREPQL----- 306
S E V +A + + + ++ P + + ER Q+
Sbjct: 255 GG-SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD---DGISPERVAQVMGLPE 310
Query: 307 ---ESRYRLSGISIYGQD----PALSTIRSSALGRASGPI-----VTQITQTMQIPISYA 354
+ + +S + + Q+ +LS R GR+ I + ++T T +P
Sbjct: 311 RCQHAAHVISDLILTAQERDGFGSLSVPRGRGRGRSDWSIGAPGGLQEVTYT--VPADKC 368
Query: 355 EDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQLIQEYMN 411
+IG GG +I++I + SGA + +Q + P I+G Q++LA+ LI E +
Sbjct: 369 GLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPSVRIFTIRGVPQQIELARHLIDEKVG 428
Query: 412 NHKESITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQP 449
+GQ P+ P +++P S P
Sbjct: 429 GTNMGAPGGFGQSPFNQAPATPH--QNTFPPRSSGCFP 464
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAPVSP 139
+++P KVG +IG+ GE IK+ E T + I + DGP+ + D+ + I+G V
Sbjct: 169 ILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPLPTGADKPLRITGD---PFKVQQ 225
Query: 140 AMDAAVRVFKR-----VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
A + + + + G+ +D ++ G S+ + VP +IG+ G +IK I
Sbjct: 226 AREMVLEIIREKDQADFRGV-RSDFSSRMGGG---SIEVSVPRFAVGIVIGRNGEMIKKI 281
Query: 195 QENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKAL 234
Q ++G ++ D +P V + + E AA V+ L
Sbjct: 282 QNDAGVRIQFKPDDGISPERVAQVMGLPERCQHAAHVISDL 322
>gi|291219869|ref|NP_001025048.2| neuro-oncological ventral antigen 2 [Mus musculus]
Length = 492
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G
Sbjct: 28 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 87
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPST 178
E V + VR + PE N AK + +L+VP++
Sbjct: 88 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNS 140
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A +IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 141 TAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 197
>gi|70989127|ref|XP_749413.1| KH domain RNA-binding protein [Aspergillus fumigatus Af293]
gi|66847044|gb|EAL87375.1| KH domain RNA-binding protein [Aspergillus fumigatus Af293]
gi|159128828|gb|EDP53942.1| KH domain RNA-binding protein [Aspergillus fumigatus A1163]
Length = 355
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 125/316 (39%), Gaps = 57/316 (18%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P+
Sbjct: 40 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTG------PLQG 93
Query: 140 AMDAAVRVFK-RVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A V K + G P+ + + VRLL+ Q +IG+QG IK IQ+ S
Sbjct: 94 TARAYALVAKGLLEGAPQMGMGGIVNNNGTHPVRLLISHNQMGTIIGRQGLKIKHIQDAS 153
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E ERIVE+QG + +E V + K L+D Y
Sbjct: 154 G--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTGTILY 205
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
N ++ T + SS+ S P R
Sbjct: 206 NPAVRASVGGSTSMNTSSVGNGYSS------RPYNR-----------------------T 236
Query: 319 GQDPALSTIRSSALGRASG--------PIVTQI-----TQTMQIPISYAEDIIGVGGTSI 365
G S +S GR S P+VT+ TQ + IP IIG GG+ I
Sbjct: 237 GNGADFSDGQSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGSKI 296
Query: 366 ENIRRTSGAIITVQES 381
IRR+SGA I++ ++
Sbjct: 297 TEIRRSSGARISIAKA 312
>gi|345785612|ref|XP_855043.2| PREDICTED: RNA-binding protein Nova-2 [Canis lupus familiaris]
Length = 597
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 136 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 195
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 196 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 248
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 249 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 302
>gi|291415485|ref|XP_002723980.1| PREDICTED: neuro-oncological ventral antigen 2 [Oryctolagus
cuniculus]
Length = 492
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G
Sbjct: 28 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 87
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPST 178
E V + VR + PE N AK + +L+VP++
Sbjct: 88 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNS 140
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A +IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 141 TAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 197
>gi|329663502|ref|NP_001193038.1| RNA-binding protein Nova-2 [Bos taurus]
Length = 492
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G
Sbjct: 28 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 87
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPST 178
E V + VR + PE N AK + +L+VP++
Sbjct: 88 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNS 140
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A +IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 141 TAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 197
>gi|5902724|ref|NP_002507.1| RNA-binding protein Nova-2 [Homo sapiens]
gi|33516944|sp|Q9UNW9.1|NOVA2_HUMAN RecName: Full=RNA-binding protein Nova-2; AltName: Full=Astrocytic
NOVA1-like RNA-binding protein; AltName:
Full=Neuro-oncological ventral antigen 2
gi|3851553|gb|AAC72355.1| RNA-binding protein Nova-2 [Homo sapiens]
gi|195934809|gb|AAI68367.1| Neuro-oncological ventral antigen 2 [synthetic construct]
Length = 492
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G
Sbjct: 28 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 87
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPST 178
E V + VR + PE N AK + +L+VP++
Sbjct: 88 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNS 140
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A +IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 141 TAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 197
>gi|312079807|ref|XP_003142332.1| hypothetical protein LOAG_06748 [Loa loa]
gi|307762504|gb|EFO21738.1| hypothetical protein LOAG_06748 [Loa loa]
Length = 342
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 110/262 (41%), Gaps = 43/262 (16%)
Query: 156 ENDVDAKASGAAF--CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFY 213
E+D D + A +++LV + A +IG+ GS IK ++E +GA ++V S AP
Sbjct: 100 EDDHDRRGKKADRPDSEMKVLVHESHAGAVIGRGGSRIKELREKTGAQLKVFSRC-AP-- 156
Query: 214 VTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQ-------ER 266
ERIV + GE K++ + ++ L++ + V P Y+ I +R
Sbjct: 157 -QSTERIVLLNGEVEKIIDCINIIIDVLKEIPIKGPVRPYDPMYYDPDIISDYGGYVPDR 215
Query: 267 QVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALST 326
+ + + S I + Y G+D S
Sbjct: 216 NFISRVGRGRDYGFGGSVIPSRYP----------------------------GRDDRYSG 247
Query: 327 IRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPD 386
+R +GR S PI T + IP IIG GG+ I +R SGA I V+ R
Sbjct: 248 MR-DMIGRYS-PIPAMQTTQVTIPDELGGAIIGKGGSRINRVREESGAQIEVEPHRDNGG 305
Query: 387 EITVEIKGTSSQVQLAQQLIQE 408
+ + I GT Q+Q AQ L+Q+
Sbjct: 306 DRIITISGTREQIQAAQYLLQQ 327
>gi|357602329|gb|EHJ63352.1| hypothetical protein KGM_14186 [Danaus plexippus]
Length = 546
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
F+++VP + G+IIG+ GE I + +DT AR+K+ D + +R LI+G E
Sbjct: 68 FKVLVPSMVAGAIIGKGGETIAQLQKDTGARVKMSKSHDFYPGTTERACLITGSVEG--- 124
Query: 137 VSPAMDAAVRVFKR----VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
+ +D + K V PE VDAK V++LVP++ A +IGK G+ IK
Sbjct: 125 IMVVLDFIMEKIKEKPELVKPFPEG-VDAKMPQDRDKQVKILVPNSTAGMIIGKGGNYIK 183
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
I+E SG+ V++ + ++ ER + + GE KA ++
Sbjct: 184 QIKEQSGSYVQI---SQKAKELSLQERCITVVGEKENNKKACLMIL 226
>gi|395854336|ref|XP_003799652.1| PREDICTED: RNA-binding protein Nova-2, partial [Otolemur garnettii]
Length = 487
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G
Sbjct: 23 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 82
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPST 178
E V + VR + PE N AK + +L+VP++
Sbjct: 83 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNS 135
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A +IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 136 TAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 192
>gi|390479167|ref|XP_002762342.2| PREDICTED: RNA-binding protein Nova-2-like [Callithrix jacchus]
Length = 608
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 128 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 187
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 188 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 240
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 241 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 294
>gi|47229298|emb|CAG04050.1| unnamed protein product [Tetraodon nigroviridis]
Length = 455
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 17/119 (14%)
Query: 88 KVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147
+VGSIIG+KGE +KK E++ ARI + +G + P+RI+ ++G P + A +
Sbjct: 51 EVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG------PTTSIFKAFSMI 102
Query: 148 FKRVSGLPENDV-----DAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
+++ E D+ ++ A+ ++RL+VP++Q +LIGK G IK I+E SG +
Sbjct: 103 IEKL----EEDISTSMTNSTATSKPPVTIRLVVPASQCGSLIGKGGCKIKEIREVSGVA 157
>gi|119577801|gb|EAW57397.1| neuro-oncological ventral antigen 2 [Homo sapiens]
Length = 556
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G
Sbjct: 92 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 151
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPST 178
E V + VR + PE N AK + +L+VP++
Sbjct: 152 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNS 204
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A +IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 205 TAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 261
>gi|148691147|gb|EDL23094.1| neuro-oncological ventral antigen 2 [Mus musculus]
Length = 411
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 2 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 61
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 62 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 114
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 115 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 168
>gi|297742912|emb|CBI35779.3| unnamed protein product [Vitis vinifera]
Length = 340
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 6/164 (3%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS-SPDRIVLISGKEEPEAPVS 138
R++ P+ +G +I + G I + ++ A IKV + + D +V I KE P
Sbjct: 45 LRLVCPIRNIGGVIRKGGVFINQIRRESGAIIKVDSTSAAEADDCLVTILAKERLHFPRG 104
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
P + +++ L D F +VRLLV Q +IGK G +I+SI+ S
Sbjct: 105 PQTSHCIFLYRMCMRLW----DWNCPSGTF-TVRLLVSFNQIGCVIGKGGQIIQSIRSES 159
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
GA +R+L D P ++++ E + V K L + L
Sbjct: 160 GAQIRILKDDHLPSCSLSSNELIQISKEPSIVRKILYQIASRLH 203
>gi|270009705|gb|EFA06153.1| hypothetical protein TcasGA2_TC008998 [Tribolium castaneum]
Length = 564
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLIS 128
PG G F+++VP + G+IIG+ GE I + ++T AR+K+ D + +R+ LI+
Sbjct: 39 PGGDGTYHFKVLVPSVAAGAIIGKGGETIAQLQKETGARVKMSKSHDFYPGTTERVCLIT 98
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
G + V+ + +R ++ P + ++K V++LVP++ A +IGK G
Sbjct: 99 GSVDAIMVVADFIADKIREKPDLTK-PLVETESKLMQDRDKQVKILVPNSTAGMIIGKAG 157
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+ IK I+E SG+ V++ + V+ ER + + GE + +A + ++ +
Sbjct: 158 NYIKQIKETSGSYVQI---SQKAKDVSLQERCITVIGEKEQNRQACQMILAKI 207
>gi|324505572|gb|ADY42393.1| Heterogeneous nuclear ribonucleoprotein K [Ascaris suum]
Length = 415
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 136/330 (41%), Gaps = 37/330 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R++VP G++IG+ GE IK+ + A + + D +P+RIV I A +
Sbjct: 107 LRLLVPSRGAGAVIGKGGESIKRLRAECDATLTIPDS--QTPERIVTIV------AEIDN 158
Query: 140 AMDAAVRVFKRVS-GLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
+ + R+ L D D + S +RLLV + A +IG+ G IK ++E +
Sbjct: 159 VIRCVNEIIPRLDECLKTRDSDDEGSARGESELRLLVHQSHAGAIIGRGGYRIKELREET 218
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
++V S P ER++++ G K++ + ++ L++ + P Y
Sbjct: 219 STQLKVYSQC-CP---QSTERVIQIIGVPEKIIACVILIINMLKEIPIKGPSRPYESMFY 274
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
+ + E D++ + + P R P+ R G+ +
Sbjct: 275 DPNFVHEYG-GFPPDRNYRGMGPRGGMYGGGLPP---------RAPRFPYGGRGMGMGV- 323
Query: 319 GQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
S A Q TQ + IP IIG GG I IR SGA I V
Sbjct: 324 -----------SPFPPAPFGGPMQTTQ-VTIPNELGGTIIGKGGERINRIREESGAHIVV 371
Query: 379 QESRGLPDEITVEIKGTSSQVQLAQQLIQE 408
+ + + I + I G+ +Q+Q AQ L+Q+
Sbjct: 372 EPQQPNSERI-ITISGSHAQIQTAQYLLQQ 400
>gi|441656325|ref|XP_004093124.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein Nova-2
[Nomascus leucogenys]
Length = 500
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 65 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 124
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 125 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 177
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 178 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 231
>gi|403299426|ref|XP_003940488.1| PREDICTED: RNA-binding protein Nova-2 [Saimiri boliviensis
boliviensis]
Length = 508
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 215 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 274
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 275 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 327
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 328 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 381
>gi|225682425|gb|EEH20709.1| KH domain RNA-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 364
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 141/345 (40%), Gaps = 46/345 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P+
Sbjct: 47 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG------PLQG 100
Query: 140 AMDAAVRVFKRV-SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A A V K + G P+ + S VRLL+ Q +IG+QG IK IQ+ S
Sbjct: 101 AAKAYAIVAKSLLEGAPQLGMGGVVSNNGTHPVRLLISHNQMGTIIGRQGLKIKYIQDAS 160
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E ERIVE+QG + +E V + K L+D Y
Sbjct: 161 G--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTGTVLY 212
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
N ++ ++S+ A + S R +G
Sbjct: 213 NPAV-----------RASVGGAPINNSLGSGGSSGGYGGRSYNRTG--------NGADFS 253
Query: 319 GQDPALSTIRSSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
Q S +S P+VT+ TQ + IP IIG GG+ I IRR+SG
Sbjct: 254 DQTGGYSRRSNSDAANRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKISEIRRSSG 313
Query: 374 AIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
A I++ ++ P + T E I G+++ + A L+ E + K
Sbjct: 314 ARISIAKA---PHDETGERMFTIMGSAAANEKALYLLYENLEAEK 355
>gi|295660901|ref|XP_002791006.1| KH domain RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280933|gb|EEH36499.1| KH domain RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 364
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 141/345 (40%), Gaps = 46/345 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P+
Sbjct: 47 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG------PLQG 100
Query: 140 AMDAAVRVFKRV-SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A A V K + G P+ + S VRLL+ Q +IG+QG IK IQ+ S
Sbjct: 101 AAKAYAIVAKSLLEGAPQLGMGGVVSNNGTHPVRLLISHNQMGTIIGRQGLKIKYIQDAS 160
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E ERIVE+QG + +E V + K L+D Y
Sbjct: 161 G--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTGTVLY 212
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
N ++ ++S+ A + S R +G
Sbjct: 213 NPAV-----------RASVGGAPINNSLGSGASSGGYGGRSYNRTG--------NGADFS 253
Query: 319 GQDPALSTIRSSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
Q S +S P+VT+ TQ + IP IIG GG+ I IRR+SG
Sbjct: 254 DQTGGYSRRSNSDAANRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKISEIRRSSG 313
Query: 374 AIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
A I++ ++ P + T E I G+++ + A L+ E + K
Sbjct: 314 ARISIAKA---PHDETGERMFTIMGSAAANEKALYLLYENLEAEK 355
>gi|345495410|ref|XP_001602171.2| PREDICTED: hypothetical protein LOC100118119 [Nasonia vitripennis]
Length = 533
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 7/170 (4%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISG 129
G G +++VP + G+IIG+ GE I + +DT AR+K+ D + +R+ LI+G
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGETIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA-KASGAAFCSVRLLVPSTQAINLIGKQG 188
+ V + +R ++ D D+ KA+ V++LVP++ A +IGK G
Sbjct: 100 SVDAIMAVMDFIMEKIREKPDLTTKTTVDFDSGKATAERDKQVKILVPNSTAGMIIGKAG 159
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+ IK I+E SG+ V++ + V+ ER + + GE AL ++
Sbjct: 160 NYIKQIKEESGSYVQI---SQKAKDVSLQERCITVIGEKENNRNALLMIL 206
>gi|4235140|gb|AAD13116.1| RNA-binding protein Nova-2 [AA 29-492] [Homo sapiens]
Length = 464
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 3 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 62
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 63 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 115
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 116 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 169
>gi|332026626|gb|EGI66735.1| RNA-binding protein Nova-1 [Acromyrmex echinatior]
Length = 514
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISG 129
G G +++VP + G+IIG+ G+ I + +DT AR+K+ D + +R+ LI+G
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA-KASGAAFCSVRLLVPSTQAINLIGKQG 188
+ V + +R ++ D D+ KA+ V++LVP++ A +IGK G
Sbjct: 100 TVDAIMEVMEFIMDKIREKPDLTSKTTVDFDSGKATAERDKQVKILVPNSTAGMIIGKAG 159
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+ IK I+E SG+ V++ + ++ ER + + GE +AL ++
Sbjct: 160 NYIKQIKEESGSYVQI---SQKAKDLSLQERCITVIGEKENNHRALHMIL 206
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP A +IGK G I +Q+++GA V++ + + FY ER+ + G +
Sbjct: 47 LKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHD--FYPGTTERVCLITGTVDAI 104
Query: 231 LKALEAVVGHLRK 243
++ +E ++ +R+
Sbjct: 105 MEVMEFIMDKIRE 117
>gi|154275678|ref|XP_001538690.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415130|gb|EDN10492.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|225556762|gb|EEH05050.1| KH domain RNA-binding protein [Ajellomyces capsulatus G186AR]
Length = 363
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 143/346 (41%), Gaps = 48/346 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P+
Sbjct: 46 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG------PLQG 99
Query: 140 AMDAAVRVFK-RVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A V K + G P+ + AS VRLL+ Q +IG+QG IK IQ+ S
Sbjct: 100 TAKAYAIVAKGLLEGAPQLGMGGVASNNGTHPVRLLISHNQMGTIIGRQGLKIKYIQDAS 159
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E ERIVE+QG + +E V + K L+D Y
Sbjct: 160 G--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTGTVLY 211
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
N + V L+ + S ST S R + +
Sbjct: 212 NPA------VRASVGGGPLNNSLGSGASTGGYGG--------------RSYNRTGNGADF 251
Query: 319 GQDPALSTIRSSALGRASG-PIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRTS 372
RS++ + G P+VT+ TQ + IP IIG GG+ I IRR+S
Sbjct: 252 SDQTGGYNRRSNSDAASRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKISEIRRSS 311
Query: 373 GAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
GA I++ ++ P + T E I G+++ + A L+ E + K
Sbjct: 312 GARISIAKA---PHDETGERMFTIMGSAAANEKALYLLYENLEAEK 354
>gi|332856422|ref|XP_524310.3| PREDICTED: RNA-binding protein Nova-2 [Pan troglodytes]
Length = 607
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 146 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 205
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 206 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 258
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 259 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 312
>gi|307181420|gb|EFN69015.1| RNA-binding protein Nova-1 [Camponotus floridanus]
Length = 514
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISG 129
G G +++VP + G+IIG+ G+ I + +DT AR+K+ D + +R+ LI+G
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA-KASGAAFCSVRLLVPSTQAINLIGKQG 188
+ V + +R ++ D D+ KA+ V++LVP++ A +IGK G
Sbjct: 100 TVDAIMEVMEFIMDKIREKPDLTSKTTVDFDSGKATAERDKQVKILVPNSTAGMIIGKAG 159
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+ IK I+E SG+ V++ + ++ ER + + GE +AL ++
Sbjct: 160 NYIKQIKEESGSYVQI---SQKAKDLSLQERCITVIGEKENNHRALHMIL 206
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP A +IGK G I +Q+++GA V++ + + FY ER+ + G +
Sbjct: 47 LKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHD--FYPGTTERVCLITGTVDAI 104
Query: 231 LKALEAVVGHLRK 243
++ +E ++ +R+
Sbjct: 105 MEVMEFIMDKIRE 117
>gi|301786262|ref|XP_002928556.1| PREDICTED: RNA-binding protein Nova-2-like [Ailuropoda melanoleuca]
Length = 329
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 24/185 (12%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G
Sbjct: 28 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 87
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPST 178
E V + VR + PE N AK + +L+VP++
Sbjct: 88 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNS 140
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A +IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 141 TAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 197
Query: 239 GHLRK 243
+++
Sbjct: 198 QKVQE 202
>gi|195499424|ref|XP_002096942.1| GE25952 [Drosophila yakuba]
gi|194183043|gb|EDW96654.1| GE25952 [Drosophila yakuba]
Length = 572
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 17/170 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 124
Query: 137 VSPAMDAAVRVFKRVSGLPE-----NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
M + ++ P+ DV++K + V++LVP++ A +IGK G+ I
Sbjct: 125 ---IMVVLEFIMDKIREKPDLTNKIVDVESKQTQERDKQVKILVPNSTAGMIIGKGGAFI 181
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
K I+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 182 KQIKEESGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 228
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 125
Query: 231 LKALEAVVGHLRK 243
+ LE ++ +R+
Sbjct: 126 MVVLEFIMDKIRE 138
>gi|195107855|ref|XP_001998509.1| GI24011 [Drosophila mojavensis]
gi|193915103|gb|EDW13970.1| GI24011 [Drosophila mojavensis]
Length = 574
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 13/173 (7%)
Query: 76 GHCVFRM--IVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGK 130
G F M +VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G
Sbjct: 62 GDTTFHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCSVRLLVPSTQAINLIGKQG 188
E + +D + + L +DA++ A V++LVP++ A +IGK G
Sbjct: 122 VEG---IMTVVDFIMDKIREKPDLTTKIIDAESKQAQERDKQVKILVPNSTAGMIIGKGG 178
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+ IK I+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 179 AFIKQIKEESGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 228
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSVEGI 125
Query: 231 LKALEAVVGHLRK 243
+ ++ ++ +R+
Sbjct: 126 MTVVDFIMDKIRE 138
>gi|296420990|ref|XP_002840050.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636260|emb|CAZ84241.1| unnamed protein product [Tuber melanosporum]
Length = 386
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 141/336 (41%), Gaps = 18/336 (5%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + E+T + V PDR++ ++G P+
Sbjct: 54 LRAIVSSKEAGVIIGKAGKNVADLREETGVKAGVSKVVTGIPDRVLTVTG------PLDG 107
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A V + + P + + ++RLL+ Q +IG+QG IK IQ+ SG
Sbjct: 108 VAKAYAMVSQTLLDSPPSTIGGGPP-PGPGTLRLLISHNQMGTIIGRQGLKIKHIQDVSG 166
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
R+ +A E T ER+V++ G+ +A+ + + K LVD YN
Sbjct: 167 --TRMTAAKEMLPQST--ERVVDVAGDP----EAIRTAIWEIGKCLVDDWQRGTGTVLYN 218
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
++ + + + + + T S R + R G S
Sbjct: 219 PAVRSPGGSSSVGMGNGMGGSDRYGGERGNTRSYARTGNGADFSDSSPPYRRHDGPSGRP 278
Query: 320 QDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ 379
D + S+ + + G + TQ + IP IIG GGT I++IRR+SGA I++
Sbjct: 279 SDRSPSSSNTQPMHTDDGEEIQ--TQNISIPADMVGCIIGRGGTKIQDIRRSSGARISIA 336
Query: 380 ES-RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414
++ G E I G++S + A L+ E + K
Sbjct: 337 KTPHGDTGERMFTIMGSASSNEKALYLLYENLEAEK 372
>gi|431909188|gb|ELK12778.1| RNA-binding protein Nova-2 [Pteropus alecto]
Length = 334
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 24/185 (12%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G
Sbjct: 28 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 87
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPST 178
E V + VR + PE N AK + +L+VP++
Sbjct: 88 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNS 140
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A +IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 141 TAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 197
Query: 239 GHLRK 243
+++
Sbjct: 198 QKVQE 202
>gi|156051102|ref|XP_001591512.1| hypothetical protein SS1G_06958 [Sclerotinia sclerotiorum 1980]
gi|154704736|gb|EDO04475.1| hypothetical protein SS1G_06958 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 371
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 148/362 (40%), Gaps = 36/362 (9%)
Query: 59 GPDAAAVPE-EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP 117
GPD +P+ ++++ R IV + G IIG+ G+ + ++T + V
Sbjct: 32 GPDGEPLPKTDEEYA--ESQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVV 89
Query: 118 VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPS 177
DR++ ISG + +S A + + G P+ + S ++LL+
Sbjct: 90 QGVHDRVLTISGGCDS---ISRAYSIVAKAL--LEGAPQMGMGGVVSNNGTHPIKLLISH 144
Query: 178 TQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
Q +IG+QG IK IQ+ SG VR+++ E T ERIVE+QG + KA+ +
Sbjct: 145 NQMGTIIGRQGLKIKHIQDVSG--VRMVAQKEMLPQST--ERIVEVQGNPEGIQKAVWEI 200
Query: 238 VGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRES 297
K LVD YN + + + +L T + T +
Sbjct: 201 C----KCLVDDWARGTGTVLYNPVVRTQTGGSGGMSQGNL-GGTGREYGSSRVMRTGNGA 255
Query: 298 LFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDI 357
F E P+ +R S + G P L TQ + IP I
Sbjct: 256 DFSEGAPRSYNRRSDSDAAQRG--PPTHDENGEEL----------QTQNISIPSDMVGCI 303
Query: 358 IGVGGTSIENIRRTSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNH 413
IG G+ I IR+TSGA I++ +S P + T E I GT+ A L+ E +
Sbjct: 304 IGRAGSKISEIRKTSGARISIAKS---PHDETGERMFTIMGTAKANDSALYLLYENLEAE 360
Query: 414 KE 415
K+
Sbjct: 361 KQ 362
>gi|281348784|gb|EFB24368.1| hypothetical protein PANDA_018514 [Ailuropoda melanoleuca]
Length = 346
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 24/185 (12%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G
Sbjct: 28 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 87
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPST 178
E V + VR + PE N AK + +L+VP++
Sbjct: 88 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNS 140
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A +IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 141 TAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 197
Query: 239 GHLRK 243
+++
Sbjct: 198 QKVQE 202
>gi|334343559|ref|XP_003341817.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Monodelphis
domestica]
Length = 367
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 19/124 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RMI+ +VGSIIG+KGE +K+ E + ARI + +G S P+RI I+G +
Sbjct: 20 LRMIMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGS-------TG 70
Query: 140 AMDAAVRV--FKRVSGLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKS 193
A+ AV + FK L E+ +G + ++RL++P++Q +LIGK G+ IK
Sbjct: 71 AVFHAVSMIAFK----LDEDLCTGPPNGGSISKPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 194 IQEN 197
I+E+
Sbjct: 127 IRES 130
>gi|307213191|gb|EFN88688.1| RNA-binding protein Nova-1 [Harpegnathos saltator]
Length = 514
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISG 129
G G +++VP + G+IIG+ G+ I + +DT AR+K+ D + +R+ LI+G
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPENDVDA-KASGAAFCSVRLLVPSTQAINLIGKQG 188
E V + +R ++ D D+ KA+ V++LVP++ A +IGK G
Sbjct: 100 SVEAIMAVMDFIMEKIREKPDLTSKTTVDFDSGKATAERDKQVKILVPNSTAGMIIGKAG 159
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+ IK I+E SG+ V++ + ++ ER + + GE AL ++ +
Sbjct: 160 NYIKQIKEESGSYVQI---SQKAKDLSLQERCITVIGEKENNRNALLMILAKV 209
>gi|195445981|ref|XP_002070572.1| GK10958 [Drosophila willistoni]
gi|194166657|gb|EDW81558.1| GK10958 [Drosophila willistoni]
Length = 578
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEG--- 124
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDA--KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ +D + + L +DA K + V++LVP++ A +IGK G+ IK I
Sbjct: 125 IMTVLDFIMDKIREKPDLTTKIIDAESKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 184
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+E SG+ V++ + P V+ ER + + G+ A + ++
Sbjct: 185 KEESGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMIL 225
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEGI 125
Query: 231 LKALEAVVGHLRK 243
+ L+ ++ +R+
Sbjct: 126 MTVLDFIMDKIRE 138
>gi|351697928|gb|EHB00847.1| RNA-binding protein Nova-2 [Heterocephalus glaber]
Length = 320
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 24 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 83
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 84 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 136
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V L
Sbjct: 137 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKL 193
>gi|195572282|ref|XP_002104125.1| GD18616 [Drosophila simulans]
gi|194200052|gb|EDX13628.1| GD18616 [Drosophila simulans]
Length = 330
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 83 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 139
Query: 137 VSPAMDAAVRVFKRVSGLPEN--DVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ M+ + + L DV++K + V++LVP++ A +IGK G+ IK I
Sbjct: 140 IMVVMEFIMDKIREKPDLTNKIVDVESKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 199
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 200 KEESGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 243
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 83 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 140
Query: 231 LKALEAVVGHLR 242
+ +E ++ +R
Sbjct: 141 MVVMEFIMDKIR 152
>gi|195388678|ref|XP_002053006.1| GJ23641 [Drosophila virilis]
gi|194151092|gb|EDW66526.1| GJ23641 [Drosophila virilis]
Length = 574
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 13/173 (7%)
Query: 76 GHCVFRM--IVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGK 130
G F M +VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G
Sbjct: 62 GDTTFHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCSVRLLVPSTQAINLIGKQG 188
E + +D + + L +DA++ A V++LVP++ A +IGK G
Sbjct: 122 VEG---IMTVVDFIMDKIREKPDLTTKIIDAESKQAQERDKQVKILVPNSTAGMIIGKGG 178
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+ IK I+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 179 AFIKQIKEESGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 228
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSVEGI 125
Query: 231 LKALEAVVGHLRK 243
+ ++ ++ +R+
Sbjct: 126 MTVVDFIMDKIRE 138
>gi|397493518|ref|XP_003817651.1| PREDICTED: RNA-binding protein Nova-2 [Pan paniscus]
Length = 349
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 4 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 63
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 64 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 116
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 117 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 170
>gi|432101641|gb|ELK29690.1| RNA-binding protein Nova-2 [Myotis davidii]
Length = 294
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 39 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 98
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 99 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 151
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V L
Sbjct: 152 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKL 208
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 19/126 (15%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP--VSSPDRIVLISGKEEPEAPVS 138
++IVP G IIG+ G +K E + A +++ P ++ +R+V +SG EPE
Sbjct: 142 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSG--EPE---- 195
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
+V K VS + V A+ +A V + VP ++GK G + QE +
Sbjct: 196 -------QVHKAVSAI----VQKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELT 244
Query: 199 GASVRV 204
GA +++
Sbjct: 245 GARIQI 250
>gi|297824455|ref|XP_002880110.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325949|gb|EFH56369.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 163
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 18/103 (17%)
Query: 300 LEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIG 359
+E++P + IS YG++P ++ SSA P+V QI P+ + + +IG
Sbjct: 1 MEKQPHQD-------ISAYGREPPMNVHVSSA-----PPMVAQI------PLPHTDTVIG 42
Query: 360 VGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLA 402
G++ R SGA +T QE+RGLP E+TVE+ T SQVQ A
Sbjct: 43 TSGSNKSYTRLLSGATVTSQETRGLPCEMTVEVSRTGSQVQTA 85
>gi|392337608|ref|XP_001075246.3| PREDICTED: RNA-binding protein Nova-2 [Rattus norvegicus]
Length = 560
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 28/231 (12%)
Query: 26 TESPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPE----EKKWPGWPGHCVFR 81
T T E PPT G ++ P S PE ++ G G +
Sbjct: 62 TTGSTAEVSVPPTSGLLTSDXXXXXXXXXPDSRKRPLETPPEVVCTKRINTGEEGEYFLK 121
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAPVS 138
+++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 122 VLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAAH 181
Query: 139 PAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAINLIGKQ 187
+ VR + PE N AK + +L+VP++ A +IGK
Sbjct: 182 SFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAGLIIGKG 234
Query: 188 GSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 235 GATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 282
>gi|226289821|gb|EEH45305.1| KH domain RNA-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 364
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 140/345 (40%), Gaps = 46/345 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P+
Sbjct: 47 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG------PLQG 100
Query: 140 AMDAAVRVFKRV-SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A A V K + G P+ + S VRLL+ Q +IG+QG IK IQ+ S
Sbjct: 101 AAKAYAIVAKSLLEGAPQLGMGGVVSNNGTHPVRLLISHNQMGTIIGRQGLKIKYIQDAS 160
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E ERIVE+QG + +E V + K L+D Y
Sbjct: 161 G--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTGTVLY 212
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
N ++ ++S+ A + S R +G
Sbjct: 213 NPAV-----------RASVGGAPINNSLGSGGSSGGYGGRSYNRTG--------NGADFS 253
Query: 319 GQDPALSTIRSSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
Q S +S P+VT+ TQ + IP IIG GG+ I IRR SG
Sbjct: 254 DQTGGYSRRSNSDAANRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKISEIRRVSG 313
Query: 374 AIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
A I++ ++ P + T E I G+++ + A L+ E + K
Sbjct: 314 ARISIAKA---PHDETGERMFTIMGSAAANEKALYLLYENLEAEK 355
>gi|346324545|gb|EGX94142.1| KH domain RNA-binding protein [Cordyceps militaris CM01]
Length = 420
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 143/366 (39%), Gaps = 41/366 (11%)
Query: 59 GPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV 118
GPD P+ + R IV + G IIG+ G+ + ++T + V
Sbjct: 29 GPDGEPAPKTDEEYAQ-AQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQ 87
Query: 119 SSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPST 178
DR++ I+G + +S A R + G P + G ++LL+
Sbjct: 88 GVHDRVLTITGGCDA---ISRAYAIVARAL--LEGAPAMGMGGVVQGNGTHPIKLLISHN 142
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
Q +IG+QG IK IQ+ SG VR+++ E ERIVE+QG + +AL +
Sbjct: 143 QMGTVIGRQGLKIKHIQDVSG--VRMVAQKE--MLPQSTERIVEVQGTPEGIQRALWEIC 198
Query: 239 GHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESL 298
K LVD YN + + + AAT + + TP R
Sbjct: 199 ----KCLVDDWQRGTGTVLYNPVVRTQAGTTGSTGSTGSFAATGNTRAEYSTPRVMRTG- 253
Query: 299 FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQ------ITQTMQIPIS 352
S S G S RS + + GP TQ + IP
Sbjct: 254 ------------NGSDFSNGGGSRPFSR-RSDSDAASRGPPTHDENGEEIQTQNISIPAD 300
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQE 408
IIG G+ I IR+TSGA I++ ++ P + T E I GT+ + A L+ E
Sbjct: 301 MVGCIIGRAGSKISEIRKTSGARISIAKA---PHDETGERMFTIMGTAKANESALFLLYE 357
Query: 409 YMNNHK 414
+ K
Sbjct: 358 NLEAEK 363
>gi|67536752|ref|XP_662150.1| hypothetical protein AN4546.2 [Aspergillus nidulans FGSC A4]
gi|40741699|gb|EAA60889.1| hypothetical protein AN4546.2 [Aspergillus nidulans FGSC A4]
gi|259482624|tpe|CBF77283.1| TPA: KH domain RNA-binding protein (AFU_orthologue; AFUA_2G02780)
[Aspergillus nidulans FGSC A4]
Length = 542
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 144/379 (37%), Gaps = 76/379 (20%)
Query: 29 PTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWP--------GHCVF 80
P + S P + EN + T ++ + T DA V +E P
Sbjct: 172 PVSSSTTPLKL--ENMDTTDIHETPIADETMTDAVNVGDEGDLEVAPKTEEEYAQSMLTL 229
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R IV + G IIG+ G+ + ++T + V DR++ ++G A
Sbjct: 230 RAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTG----------A 279
Query: 141 MDAAVRVFKRVS-----GLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
+ R + V+ G P+ + S +RLL+ Q +IG+QG IK IQ
Sbjct: 280 LSGTARAYALVAKGLLEGAPQMGMGGIVSNNGTHPIRLLISHNQMGTIIGRQGLKIKHIQ 339
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE 255
+ SG VR+++ E ERIVE+QG + +E + + K L+D
Sbjct: 340 DASG--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAIWEIGKCLIDDWQRGTGT 391
Query: 256 KTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGI 315
YN + V + S+ ++ S P R
Sbjct: 392 ILYNPA------VRSSVGSGSIQHNGGNSDSYNSRPYNR--------------------- 424
Query: 316 SIYGQDPALSTIRSSALGRASG--------PIVTQI-----TQTMQIPISYAEDIIGVGG 362
G S +S GR S P+VT+ TQ + IP IIG GG
Sbjct: 425 --TGNGADFSD-QSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGG 481
Query: 363 TSIENIRRTSGAIITVQES 381
T I IRR+SGA I++ ++
Sbjct: 482 TKITEIRRSSGARISIAKA 500
>gi|195037250|ref|XP_001990077.1| GH18435 [Drosophila grimshawi]
gi|193894273|gb|EDV93139.1| GH18435 [Drosophila grimshawi]
Length = 569
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 13/173 (7%)
Query: 76 GHCVFRM--IVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGK 130
G F M +VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G
Sbjct: 62 GDTTFHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA--FCSVRLLVPSTQAINLIGKQG 188
E + +D + + L +DA++ A V++LVP++ A +IGK G
Sbjct: 122 VEG---IMTVVDFIMDKIREKPDLTTKIIDAESKQAQERDKQVKILVPNSTAGMIIGKGG 178
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+ IK I+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 179 AFIKQIKEESGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 228
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSVEGI 125
Query: 231 LKALEAVVGHLRK 243
+ ++ ++ +R+
Sbjct: 126 MTVVDFIMDKIRE 138
>gi|385305943|gb|EIF49885.1| kh domain rna binding protein [Dekkera bruxellensis AWRI1499]
Length = 541
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
P + FRM+ + + +++G+ GE IKK E + ARI V D P+R++ + G P
Sbjct: 153 PTYVHFRMLCTISEAATVVGKGGETIKKIKELSNARINVSDNLKGVPERVISVRG---PA 209
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
V+ A VR+ G P N V + + ++RLL P T +IGK+GS + I
Sbjct: 210 EYVAKAFGLIVRM---QLGEPLN-VPSSLESQQY-NLRLLFPHTIMGYIIGKKGSRFREI 264
Query: 195 QENSGASVRV 204
+E+S A+++
Sbjct: 265 EESSAAALKA 274
>gi|116787292|gb|ABK24450.1| unknown [Picea sitchensis]
Length = 357
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 18/167 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
R++V GS+IG+ G + + ARI++ P DRI+L++G
Sbjct: 48 LRLLVSNAAAGSVIGKGGATVSDFQTQSGARIQLSRNHEFFPGTTDRIILVTGS------ 101
Query: 137 VSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
++ + AA + +++ E NDVD K S VRL++P++ +IGK G+ IKS
Sbjct: 102 INEILTAANLILQKLLSEAEDNNDVDEKTS-----QVRLVLPNSVCGGIIGKGGATIKSF 156
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
E+S AS+++ S D+ V+ +R+V + G + L+A+ +V L
Sbjct: 157 VEHSQASIKLSSQDQILPGVS--DRLVTITGTLEQQLRAIFLIVSKL 201
>gi|194903195|ref|XP_001980824.1| GG16798 [Drosophila erecta]
gi|190652527|gb|EDV49782.1| GG16798 [Drosophila erecta]
Length = 572
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ GE I +DT AR+K+ D + +R+ LI+G E
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEA--- 124
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDA--KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ ++ + + L VDA K + V++LVP++ A +IGK G+ IK I
Sbjct: 125 IMVVLEFIMDKIREKPDLTNKIVDAESKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQI 184
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+E SG+ V++ + P V+ ER + + G+ A + ++ +
Sbjct: 185 KEESGSYVQI---SQKPKDVSLQERCITIIGDKENNKNACKMILSKI 228
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP+ + +IGK G I S+Q+++GA V++ + + FY ER+ + G +
Sbjct: 68 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHD--FYPGTTERVCLITGSTEAI 125
Query: 231 LKALEAVVGHLRK 243
+ LE ++ +R+
Sbjct: 126 MVVLEFIMDKIRE 138
>gi|70950652|ref|XP_744631.1| RNA binding protein [Plasmodium chabaudi chabaudi]
gi|56524664|emb|CAH77202.1| RNA binding protein, putative [Plasmodium chabaudi chabaudi]
Length = 410
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 30/175 (17%)
Query: 61 DAAAVPEEK-----KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD 115
D +VP EK K+ CV R ++ V IIG+ G IK+ T A ++D
Sbjct: 21 DNFSVPREKNLLLHKFGKEASSCVVRFVLDVETTAWIIGKAGCHIKEIRTITGAGAVIVD 80
Query: 116 GP-----VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
P V + DRI+ +SG E + A+++ + E +++ S
Sbjct: 81 APDNIENVKTCDRILTLSGSAENKY-------NALKLIVKQMEEREKNINN--------S 125
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG 225
+R+LVP A LIG++GS+IK I E SG+ ++V E +E+E++V + G
Sbjct: 126 MRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKE-----SENEKLVLISG 175
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPV 137
RM+VP +IGRKG +IK E + ++I+V S +++VLISG PE+ +
Sbjct: 126 MRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKESENEKLVLISG--SPESKI 181
>gi|426243970|ref|XP_004015811.1| PREDICTED: RNA-binding protein Nova-2 [Ovis aries]
Length = 255
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 24/182 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 12 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 71
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 72 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 124
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V +
Sbjct: 125 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKV 181
Query: 242 RK 243
++
Sbjct: 182 QE 183
>gi|146422870|ref|XP_001487369.1| hypothetical protein PGUG_00746 [Meyerozyma guilliermondii ATCC
6260]
Length = 545
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 28 SPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVP---EEKKWPGWPGHCVFRMIV 84
+P T S IG+ + T+++ +P + D + P + + P + FRM
Sbjct: 149 NPITNSGVSQAIGTTTSYGTSQAYDPVPFANHLDYTSRPMANHQAERELDPTYVSFRMYC 208
Query: 85 PVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAA 144
PV + +IG++G++I E ARI+V + +RI+L+ G P V+ A
Sbjct: 209 PVKEASFVIGKRGDMINHLREKANARIQVSENIKDVQERIILVKG---PAENVAKAFGLI 265
Query: 145 VRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
R L E + + + + ++++L+P +IGK GS + I+ENS A
Sbjct: 266 TRAI-----LEEPEDEPASIMSRQYNLKVLIPHPMVGYIIGKGGSKFREIEENSAAK--- 317
Query: 205 LSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
L A E P + D R++ + G V A+ + ++ + +++
Sbjct: 318 LKAAEQPLPNSTD-RVLSVLG----VGDAIHIAIYYISQVIIEH 356
>gi|189238821|ref|XP_968538.2| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein k
[Tribolium castaneum]
gi|270010156|gb|EFA06604.1| hypothetical protein TcasGA2_TC009519 [Tribolium castaneum]
Length = 414
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++P GSIIG+ G+ I K +A I V D P P+R++ +S
Sbjct: 23 VRLLIPSKVAGSIIGKGGQNITKLRSQYKASITVPDCP--GPERMLTLSSD--------- 71
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+D + V +P + + +R+++ +QA +IGK G IK ++E +G
Sbjct: 72 -LDTICNIVTDV--VPNLEENGGRVNGNELDLRMMIHQSQAGCVIGKAGYKIKELREKTG 128
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
A +++ S + AP +RI+++ GE +K + ++ ++ ++ + V P Y+
Sbjct: 129 ARIKIFS-NVAP---QSTDRIIQIVGEPSKCVDSIREIITLIKSNPIKGIVNPYDPHNYD 184
Query: 260 ASISQE 265
++E
Sbjct: 185 DYYAEE 190
>gi|147906092|ref|NP_001080641.1| far upstream element (FUSE) binding protein 1 [Xenopus laevis]
gi|28278093|gb|AAH44277.1| Fubp1 protein [Xenopus laevis]
Length = 653
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 17/181 (9%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +D+ +I++ PDR +++G + ++ A
Sbjct: 95 VPDGMVGFIIGRGGEQISRIQQDSGCKIQIAPDSAGMPDRSCMLTGSPD-------SVQA 147
Query: 144 AVRVFKRV--SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
A R+ ++ G P G+ +++P+++A +IGK G IK +QE +G
Sbjct: 148 AKRLLDQIVEKGRPTPGFH-HGEGSGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG-- 204
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNAS 261
V+++ + P D + + + G+ KV +A E V+ +R DQG Y +
Sbjct: 205 VKMVMIQDGPQNTGAD-KPLRIAGDPYKVQQAKEMVLELIR----DQGGFREIRNEYGSR 259
Query: 262 I 262
I
Sbjct: 260 I 260
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGKE 131
G+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 172 GNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRIAG-- 227
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+P V A + + + + G E + + A + + +P +IG+ G +I
Sbjct: 228 DPYK-VQQAKEMVLELIRDQGGFREIRNEYGSRIGANEGIDVPIPRFAVGIVIGRSGEMI 286
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
K IQ ++G ++ D + ERI ++ G A E + LR
Sbjct: 287 KKIQNDAGVRIQFKPDDG-----SVPERIAQITGPQDGCQHAAEIINDLLR 332
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IGR GE+IKK D RI+ S P+RI I+G ++ + ++
Sbjct: 270 IPRFAVGIVIGRSGEMIKKIQNDAGVRIQFKPDDGSVPERIAQITGPQDGCQHAAEIIND 329
Query: 144 AVRVFKRVSGLPENDVDAKASG----------AAFCSVRLLVPSTQAINLIGKQGSLIKS 193
+R + + +VP+ + +IGK G IK+
Sbjct: 330 LLRSVQSGNAGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFVVPTVKTGLIIGKGGETIKN 389
Query: 194 IQENSGASVRV 204
I + SGA + +
Sbjct: 390 ISQTSGARIEL 400
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 357 IIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQLIQE 408
IIG GG +I+NI +TSGA I +Q + P+ I+G+ Q+ A+QL++E
Sbjct: 379 IIGKGGETIKNISQTSGARIELQRNPPPNADPNVKLFTIRGSPQQIDYARQLVEE 433
>gi|440907529|gb|ELR57670.1| RNA-binding protein Nova-2, partial [Bos grunniens mutus]
Length = 298
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 3 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 62
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 63 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 115
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 116 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 169
>gi|326935642|ref|XP_003213877.1| PREDICTED: poly(rC)-binding protein 2-like, partial [Meleagris
gallopavo]
Length = 168
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 22/155 (14%)
Query: 89 VGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVF 148
VGSIIG KG+ +KK E++ ARI + +G + P+RI+ ++G +A + F
Sbjct: 1 VGSIIG-KGKSVKKMREESGARINISEG--NCPERIITLAG----------PTNAIFKAF 47
Query: 149 KRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ E D+ + + + S +RL+VP++Q +LIGK G IK I+E++GA V+
Sbjct: 48 AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQ 107
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
V + D P ER + + G +++ ++ +
Sbjct: 108 V-AGDMLP---NSTERAITIAGIPQSIIECVKQIC 138
>gi|82594082|ref|XP_725277.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23480217|gb|EAA16842.1| KH domain, putative [Plasmodium yoelii yoelii]
Length = 759
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 31/185 (16%)
Query: 61 DAAAVPEEK-----KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD 115
D +VP EK K+ CV R ++ V IIG+ G IK+ T A ++D
Sbjct: 337 DNFSVPREKNLLLHKFGKESSSCVIRFVLDVETTAWIIGKAGCHIKEIRTITGAGAVIVD 396
Query: 116 GP-----VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
P V + DRI+ +SG PE + A+++ + E +++ S
Sbjct: 397 APDNIENVKTCDRILTLSG--SPENKYN-----ALKLIVKQMEEREKNINN--------S 441
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE-AAK 229
+R+LVP A LIG++GS+IK I E SG+ ++V E+ E+E++V + G +K
Sbjct: 442 MRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKES-----ENEKLVLISGSPESK 496
Query: 230 VLKAL 234
+L ++
Sbjct: 497 ILASV 501
>gi|269784927|ref|NP_001161615.1| NOVA-like protein [Saccoglossus kowalevskii]
gi|268054231|gb|ACY92602.1| NOVA-like protein [Saccoglossus kowalevskii]
Length = 516
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEA 135
+ +M++P GS+IG+ G+ + + +T A IK+ P +R+VLI+G E
Sbjct: 47 ILKMLIPSAAAGSVIGKGGQTVVQLQRETGANIKLSKSNDYYPGTSERVVLITGTVESLT 106
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
V + VR +++ N+ + S V++++P++ A +IGK G+ IK+
Sbjct: 107 AVGNFVIEKVRDSPQLAAKTGNE--SAVSQERARQVKIIIPNSTAGLIIGKGGATIKAFM 164
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
E +G+ +++ E V ER++ + GE KA+ AV+ +++
Sbjct: 165 EQTGSKLQISQKSEG---VNLSERVLTISGEGDANKKAMNAVISKVQE 209
>gi|395751404|ref|XP_003780598.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein Nova-2 [Pongo
abelii]
Length = 681
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEE 132
G + ++P GSIIG+ G+ I + ++T A IK + + +R+ L+ G E
Sbjct: 131 GEYFLKELIPSYAAGSIIGKGGQTIVQLQKETGATIKXXXXVPWHTGTTERVCLVQGTAE 190
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK +L+VP++ A
Sbjct: 191 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAK-------QAKLIVPNSTAG 243
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 244 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 297
>gi|405957027|gb|EKC23265.1| Heterogeneous nuclear ribonucleoprotein K [Crassostrea gigas]
Length = 594
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 23/161 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R ++ G+IIG+ G IK+ +D +A + V D +SP+R++ I A +
Sbjct: 80 LRFLLASKNAGAIIGKGGSNIKRLRQDYKASVTVPDS--TSPERVLTIG------ANLGT 131
Query: 140 AMDAAVRVFKRV---SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A++ + + ++ ND D C +RLLV +QA +IG+ G IK ++E
Sbjct: 132 ALECVLDIIPKLEDYKNYKNNDFD--------CEMRLLVHQSQAGCIIGRAGFKIKELRE 183
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+GA ++V S P ER+V + G+ V+ +E +
Sbjct: 184 RTGAQIKVYSQ-CCP---ESTERVVAIGGKPKIVVDCIETI 220
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLP--DEITVEIKGTSSQ 398
TQ+T IP A IIG GG I+ IRR S A I + E GLP ++ + I GT Q
Sbjct: 473 TQVT----IPKDLAGAIIGKGGARIQEIRRQSNAQIVIDE--GLPGSNDRIITITGTHEQ 526
Query: 399 VQLAQQLIQ 407
+Q AQ L+Q
Sbjct: 527 IQSAQFLLQ 535
>gi|189188542|ref|XP_001930610.1| Poly(rC)-binding protein 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972216|gb|EDU39715.1| Poly(rC)-binding protein 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 364
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 142/350 (40%), Gaps = 49/350 (14%)
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP 136
R IV + G IIG+ G+ + ++T R V DR++ ++G +
Sbjct: 44 QLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGVHDRVLSVTGSL---SG 100
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+S A A + + G P + +RLL+ Q +IG+QG IK IQ+
Sbjct: 101 ISKAYGLAAKGL--LEGAPAMGMGGVIRTDGTHPIRLLISHNQMGTIIGRQGLKIKQIQD 158
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
SG VR+++ E ERIVE+QG A + KA V + K L+D
Sbjct: 159 ASG--VRMVAQKE--MLPQSTERIVEVQGSPAGIEKA----VWEIGKCLIDDHERGYGTV 210
Query: 257 TYNASISQERQVETWADKSSLH---AATQSAISTEYTPSTRRESLFLEREPQLESRYRLS 313
YN + +V+ A L +A ++ T + F + P R S
Sbjct: 211 LYNPVV----RVQPGAGPGPLSNGGSAPSGSMGGRSYNRTGHGADFSDSPPAFSRR---S 263
Query: 314 GISIYGQDPALSTIRSSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENI 368
G S A R P T+ TQ + IP IIG GGT I I
Sbjct: 264 G--------------SDAASRPPPPTHTEDGEEMQTQNISIPSDMVGCIIGRGGTKISEI 309
Query: 369 RRTSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
R+TS A I++ ++ P + T E I G++S + A L+ E + K
Sbjct: 310 RKTSNARISIAKA---PHDDTGERMFTITGSASANEKALYLLYENLEAEK 356
>gi|19424312|ref|NP_598286.1| far upstream element-binding protein 2 [Rattus norvegicus]
gi|37078084|sp|Q99PF5.1|FUBP2_RAT RecName: Full=Far upstream element-binding protein 2;
Short=FUSE-binding protein 2; AltName: Full=KH
type-splicing regulatory protein; Short=KSRP; AltName:
Full=MAP2 RNA trans-acting protein 1; Short=MARTA1
gi|12584134|gb|AAG59811.1|AF308818_1 MAP2 RNA trans-acting protein MARTA1 [Rattus norvegicus]
Length = 721
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 211
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 212 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 268
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 269 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 310
>gi|340959534|gb|EGS20715.1| hypothetical protein CTHT_0025510 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 373
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 143/348 (41%), Gaps = 64/348 (18%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R +V + G IIG+ G+ + E+T + V DR++ I+G + VS
Sbjct: 53 LRALVSSKEAGVIIGKGGQNVANLREETGVKAGVSKVVQGVYDRVLTITGGCDA---VSR 109
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A R + G P + ++LL+ Q +IG+QG IK IQ+ SG
Sbjct: 110 AYAVVARAL--LEGAPAVSMGGVVQHNGTHPIKLLISHNQMGTIIGRQGQRIKYIQDVSG 167
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD---QGVLPLFEK 256
VR+++ E ERIVE+QG + +A+ + K LVD +G +F
Sbjct: 168 --VRMVAQKE--MLPQSTERIVEVQGTPEGIQRAVWEIC----KCLVDDWQRGTGTVF-- 217
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGIS 316
YN ++ QV + D+ ++ +++ +R
Sbjct: 218 -YNPAV--RTQVGGFHDRYGSR-VLRTGNGADFSNGSRS--------------------- 252
Query: 317 IYGQDPALSTIRSSALGRASGPIVTQ------ITQTMQIPISYAEDIIGVGGTSIENIRR 370
YG+ RS + G GP TQ + IP IIG GG+ I IR+
Sbjct: 253 -YGR-------RSDSEGGPRGPPTHDENGEEIQTQNISIPADMVGCIIGRGGSKISEIRK 304
Query: 371 TSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
TSGA I++ ++ P + T E I GT+ + A L+ E + K
Sbjct: 305 TSGARISIAKA---PHDETGERMFTIMGTAKANETALFLLYENLEAEK 349
>gi|119195161|ref|XP_001248184.1| hypothetical protein CIMG_01955 [Coccidioides immitis RS]
gi|303310665|ref|XP_003065344.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105006|gb|EER23199.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|392862573|gb|EAS36772.2| KH domain RNA-binding protein [Coccidioides immitis RS]
Length = 366
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 128/309 (41%), Gaps = 42/309 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P+
Sbjct: 50 LRAIVSTKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG------PLQG 103
Query: 140 AMDAAVRVFKRV-SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A V K + G P+ + VRLL+ Q +IG+ G IK IQ+ S
Sbjct: 104 TAKAYGMVAKSLLEGAPQMGMGGIIQNNGTHPVRLLISHNQMGTIIGRNGLKIKCIQDAS 163
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E ERIVE+QG + +E V + K L+D Y
Sbjct: 164 G--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTGTVLY 215
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
N ++ ++++ A+ ++ P+T + R + +
Sbjct: 216 NPAV-----------RANVGGASMNSAFVGPNPNTYSGRPY----------NRTGNGADF 254
Query: 319 GQDPALSTIRSSALGRASG-PIVTQ-----ITQTMQIPISYAEDIIGVGGTSIENIRRTS 372
P R ++ G P+VT+ TQ + IP IIG GG+ I IRR+S
Sbjct: 255 SDHPGTYNRRHNSDAPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKISEIRRSS 314
Query: 373 GAIITVQES 381
GA I++ ++
Sbjct: 315 GARISIAKA 323
>gi|68069073|ref|XP_676447.1| RNA binding protein [Plasmodium berghei strain ANKA]
gi|56496150|emb|CAH94902.1| RNA binding protein, putative [Plasmodium berghei]
Length = 735
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 31/185 (16%)
Query: 61 DAAAVPEEK-----KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD 115
D +VP EK K+ CV R ++ V IIG+ G IK+ T A ++D
Sbjct: 335 DNFSVPREKNLLLHKFGKESSSCVIRFVLDVETTAWIIGKAGCHIKEIRTITGAGAVIVD 394
Query: 116 GP-----VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
P V + DRI+ +SG PE + A+++ + E +++ S
Sbjct: 395 APDNIENVKTCDRILTLSG--SPENKYN-----ALKLIVKQMEEREKNINN--------S 439
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE-AAK 229
+R+LVP A LIG++GS+IK I E SG+ ++V E+ E+E++V + G +K
Sbjct: 440 MRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKES-----ENEKLVLISGSPESK 494
Query: 230 VLKAL 234
+L ++
Sbjct: 495 ILASV 499
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIK---KTCEDTRARIKVLDGPVSSP--DRIVLISGKEEPE 134
+ +++P +G +IG+ G ++ K C+ K D V P ++I+ +SGK+E +
Sbjct: 70 YCILLPNRAIGYVIGKSGNNVREIEKVCDVIIKCQKEFDISVYPPPSEKILTVSGKKENK 129
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
A++ + K V E D S+ ++VP+ +IG++GS I S+
Sbjct: 130 KK---ALELVLNKSKTVMDFQEEDGKE--------SIVIIVPTRSIPIIIGQKGSKISSL 178
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
E S + V D+ P +D+ I + K++ + +++ L + + + G+L +
Sbjct: 179 SERSLCEINV-HKDDVPG--IKDKAIFIKSNQITKIIDCI-SIIYDLLEEVTENGILEIA 234
Query: 255 E 255
E
Sbjct: 235 E 235
>gi|397523648|ref|XP_003831836.1| PREDICTED: far upstream element-binding protein 2-like [Pan
paniscus]
Length = 630
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 70 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 129
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 130 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 186
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 187 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 228
>gi|390478449|ref|XP_003735512.1| PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding
protein 2 [Callithrix jacchus]
Length = 657
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 97 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 156
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 157 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 213
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 214 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 255
>gi|410982764|ref|XP_003997718.1| PREDICTED: RNA-binding protein Nova-2 [Felis catus]
Length = 372
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G
Sbjct: 36 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 95
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPST 178
E V + VR + PE N AK + +L+VP++
Sbjct: 96 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNS 148
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A +IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 149 TAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 205
>gi|313229072|emb|CBY18224.1| unnamed protein product [Oikopleura dioica]
gi|313246840|emb|CBY35700.1| unnamed protein product [Oikopleura dioica]
Length = 293
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 103/208 (49%), Gaps = 19/208 (9%)
Query: 40 GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGEL 99
GSE+ + + S + +G ++++ +K P + +++VP GSIIG+ G+
Sbjct: 65 GSEDNQESKRHQSDI---SGTTSSSLMLREKTEAGP--LLLKILVPAYAAGSIIGKCGQT 119
Query: 100 IKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAPVSPAMDAAVRVF-KRVSGLP 155
I + +D+ A IK+ P +RI L++G + A+ R ++ P
Sbjct: 120 ITQLQKDSGAVIKLSKAKDFYPGTTERIGLVTGD-------AAALKHVYRFMTEKTFEFP 172
Query: 156 ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVT 215
A +G +++VP+T A +IGK G+ IK I E++GA V++ + P +
Sbjct: 173 VPKDMAIQNGDRHKQAKIIVPNTTAGLIIGKAGATIKHIMESTGAKVQL---SQKPEQIN 229
Query: 216 EDERIVEMQGEAAKVLKALEAVVGHLRK 243
ER++ + GE +++ A + ++ +++
Sbjct: 230 LQERVITVTGEKSELYNAGDVILAKIKE 257
>gi|392344006|ref|XP_002728759.2| PREDICTED: RNA-binding protein Nova-2 [Rattus norvegicus]
Length = 576
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 115 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 174
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
+ VR + PE N AK + +L+VP++ A
Sbjct: 175 ALNAAHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 227
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 228 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 281
>gi|389584761|dbj|GAB67493.1| RNA binding protein [Plasmodium cynomolgi strain B]
Length = 782
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 35/224 (15%)
Query: 61 DAAAVPEEK-----KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD 115
D +VP+E+ K+ CV R ++ V IIG+ G IK+ T A ++D
Sbjct: 341 DNFSVPKERNLLLHKYGKEASACVIRFVLDVETTAWIIGKSGCHIKEIRTITGAGAVIVD 400
Query: 116 GP-----VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
P V + DRI+ +SG E + A+++ R E +++
Sbjct: 401 APDNIENVKTCDRILTLSGSAENKF-------NALKLIVRQMEEREKNINH--------P 445
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+R+LVP A LIG++GS+IK I E SG+ ++V E +E+E++V + G
Sbjct: 446 MRMLVPGKAASFLIGRKGSIIKYITEMSGSQIQVAKNKE-----SENEKLVLISGSPDSK 500
Query: 231 LKALEAVVGHLRKF----LVDQGVL-PLFEKTYNASISQERQVE 269
+ A V+ L ++ +V +G+L PL + ++ S ++ V+
Sbjct: 501 ILASILVLQKLEEYENPAIVREGLLIPLNDVFFSLSSNKYANVK 544
>gi|410910370|ref|XP_003968663.1| PREDICTED: RNA-binding protein Nova-1-like [Takifugu rubripes]
Length = 496
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 52 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 111
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + VR + VS L P+ V+ A +L+VP++ A
Sbjct: 112 TVEALNGVHNFIAEKVREMPQSTQKTEPVSILQPQTTVNPDRVKQA----KLIVPNSTAG 167
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K++ E SGA V++ + P + ER+V + GE + KA+E +V +
Sbjct: 168 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTISGEPEQNRKAVEIIVQKI 224
Query: 242 RK 243
++
Sbjct: 225 QE 226
>gi|297275911|ref|XP_001090850.2| PREDICTED: far upstream element-binding protein 2 [Macaca mulatta]
Length = 686
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 90 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 149
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 150 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 206
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 207 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 248
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 70 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 128
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 129 RSVSLTGAPESVQKAKMMLDD 149
>gi|82540955|ref|XP_724754.1| RNA-binding protein Nova-2 [Plasmodium yoelii yoelii 17XNL]
gi|23479512|gb|EAA16319.1| RNA-binding protein Nova-2 [Plasmodium yoelii yoelii]
Length = 338
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 85/377 (22%), Positives = 157/377 (41%), Gaps = 62/377 (16%)
Query: 61 DAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSS 120
D A+ E++ C +M++ L GSIIG+ GE+I T +K+
Sbjct: 7 DGQAIEEDRTQL-----CFVKMLINNLVAGSIIGKNGEIISGIENKTGCSLKLSPNNSFF 61
Query: 121 PD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPS 177
P+ R+++I GK++ V + +R ++S L N + K + R++VP
Sbjct: 62 PNTQKRVLVICGKKKQINNVVLIILDKIR---QISSLANNKNEKKIKTY---TCRIVVPK 115
Query: 178 TQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV----LKA 233
+ +IGK G IK +Q +G ++V S E Y ERI+ + G A + K
Sbjct: 116 SAVSAIIGKGGYQIKQLQNKTGTKIQV-SNRECGLY----ERIITIVGSFASIKDTATKV 170
Query: 234 LEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPST 293
+EA+ D + L YN ++ E + +++ + + + I+ +
Sbjct: 171 IEAI-------QTDPNLKDLLNVNYNKELNIE-TITKINNRNYIKKFSHNFINHVHM--- 219
Query: 294 RRESLFLEREPQLESRYRL-SGISIYGQDPALSTIRSSALGRASGPIVT-QITQTMQIPI 351
+RY + I+ + + + L R + + Q +++IP
Sbjct: 220 --------------NRYLIPQQYGIFQHEHYVDANMINYLMRNNRDLFNLQCEISIEIPD 265
Query: 352 SYAEDIIGVGGTSIENIRRTSGAIITVQESR----GLPDEITVEIKGTSSQVQLAQQLIQ 407
+ +IG G+ + NI ++GA I + + G D T +I GT + V A L+
Sbjct: 266 KFIGSVIGKNGSRLTNIMNSTGAKIKISKKGELIPGTFDRKT-KIIGTVAAVHAAHVLVL 324
Query: 408 EYMNNHKESITSSYGQI 424
+ + S+Y QI
Sbjct: 325 -------QCLESAYMQI 334
>gi|403296273|ref|XP_003939037.1| PREDICTED: far upstream element-binding protein 2, partial [Saimiri
boliviensis boliviensis]
Length = 644
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 84 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 143
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 144 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 200
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 201 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 242
>gi|395850961|ref|XP_003798040.1| PREDICTED: far upstream element-binding protein 2 [Otolemur
garnettii]
Length = 712
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 211
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 212 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 268
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 269 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 310
>gi|354479313|ref|XP_003501856.1| PREDICTED: far upstream element-binding protein 2-like [Cricetulus
griseus]
Length = 639
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 70 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 129
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 130 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 186
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 187 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 228
>gi|406607447|emb|CCH41238.1| Insulin-like growth factor 2 mRNA-binding protein 2
[Wickerhamomyces ciferrii]
Length = 329
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 21/161 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA---- 135
FR++V V + G +IG+ G +I + T + V PDRI+ ++G + A
Sbjct: 38 FRILVSVKEAGIVIGKNGSVIADIRDQTGVKAGVSRVVQGCPDRILTVTGPLDSTAQALG 97
Query: 136 ------PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGS 189
SP + + F LP + + S+RLL+P+ Q +IG+QG+
Sbjct: 98 MIAKALATSPLDETIFQYFPLKRLLPPGEEGS-------TSLRLLIPNAQMGTIIGRQGA 150
Query: 190 LIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
IK++QEN VR++++ + F ER+VE+QG K+
Sbjct: 151 RIKTLQEN--YDVRLVASKD--FLQNSTERLVELQGLPEKI 187
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQL 401
+I++T+ P + +IG G+ I+ IR+ SGA IT+ +E + + G++ V
Sbjct: 245 EISKTVNFPSQFVGCLIGKAGSRIQEIRKVSGAQITIASEDDDNNERSFTLVGSNKSVDK 304
Query: 402 AQQLIQEYMNNHKE 415
A +Q+ + KE
Sbjct: 305 ALSFLQQNLEKEKE 318
>gi|431922364|gb|ELK19455.1| Far upstream element-binding protein 2 [Pteropus alecto]
Length = 709
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 113 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 172
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 173 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 229
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 230 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 271
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 93 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 151
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 152 RSVSLTGAPESVQKAKMMLDD 172
>gi|440901061|gb|ELR52061.1| Far upstream element-binding protein 2, partial [Bos grunniens
mutus]
Length = 664
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 127
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 128 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 184
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 185 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 226
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 48 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 106
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 107 RSVSLTGAPESVQKAKMMLDD 127
>gi|392558575|gb|EIW51762.1| hypothetical protein TRAVEDRAFT_156921 [Trametes versicolor
FP-101664 SS1]
Length = 378
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 144/350 (41%), Gaps = 60/350 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R ++ IIG+ G + + E + AR+ V + +P+RI+ +SG P VS
Sbjct: 65 MRCLIVTQDASIIIGKAGSHVNEIREKSGARVVVSESIPGNPERILNVSG---PLDAVSK 121
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A VR R++ P + S A +++ ++P+++ ++IGK G+ IK IQE SG
Sbjct: 122 AFGLIVR---RINDEPFDKPSVPGSRA--VTIKFMIPNSRMGSVIGKGGTKIKEIQEASG 176
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
A L+A E ER++ + G V A+ ++ L++
Sbjct: 177 AR---LNASET-MLPGSTERLLSVSG----VADAIHIATYYIGNILIE------------ 216
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
+ ER T + SS ++ A S + + R R P S Y G YG
Sbjct: 217 ---ANERMPTT--NNSSYRPSSYQASSAPPSSTPR------GRPPYSGSSYVPGG---YG 262
Query: 320 QDPALSTIRSSALGRASGPIVTQI-TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITV 378
Q+P ++ +Q+ TQ + IP IIG GG I IR S + I +
Sbjct: 263 QNPYAPAAPAAPAPGPP----SQLQTQQIYIPNDLVGCIIGKGGAKINEIRHMSASQIKI 318
Query: 379 QE-------------SRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
E G E V I G + +Q+A QL+ + K+
Sbjct: 319 MEPGAVGVGLNGAAAPAGSEGERLVVITGQPANIQMAVQLLYSRLEQEKQ 368
>gi|73976022|ref|XP_863341.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
isoform 7 [Canis lupus familiaris]
Length = 580
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P ++GP +A P ++ P + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 384 PPTSGPPSAMTPPYPQFEQAPQTETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI- 442
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P +PD R+V+I+G PEA A R++ ++ EN V K +
Sbjct: 443 -APAEAPDAKVRMVIITGP--PEA----QFKAQGRIYGKIKE--ENFVSPKEEVKLEAHI 493
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE 226
R VPS A +IGK G + +Q S A V V+ D+ P D+ +V++ G
Sbjct: 494 R--VPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTP--DENDQVVVKITGH 543
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL--DGPVSSPDRIVLISGKEE 132
P R++VP VG+IIG++G I+ + T+++I V + ++ I ++S E
Sbjct: 193 PCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPE- 251
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
AA + + D+ +++L + LIGK+G +K
Sbjct: 252 -------GTSAACKSILEIMHKEAQDIKFTEE----IPLKILAHNNFVGRLIGKEGRNLK 300
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
I++++ + + E Y ER + ++G KA E ++ +R+
Sbjct: 301 KIEQDTDTKITISPLQELTLY--NPERTITVKGNVETCAKAEEEIMKKIRE 349
>gi|2055427|gb|AAB53222.1| KSRP [Homo sapiens]
Length = 711
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 210
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 211 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 267
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 268 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 309
>gi|363749247|ref|XP_003644841.1| hypothetical protein Ecym_2278 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888474|gb|AET38024.1| Hypothetical protein Ecym_2278 [Eremothecium cymbalariae
DBVPG#7215]
Length = 398
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 136/328 (41%), Gaps = 47/328 (14%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
P + RM+ V ++G KGE I + EDT+ RI V D + P+R+V + G E
Sbjct: 45 PDYVHMRMLCLVKHASMVVGAKGERISRIKEDTKTRINVSDNIKNVPERVVYLRGSCE-- 102
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAF-CSVRLLVPSTQAINLIGKQGSLIKS 193
D A + F ++S ++ D +++ + +V LL+P +IGKQGS ++
Sbjct: 103 -------DVA-KAFGKISRAINDEDDRESNERSLPLTVNLLIPHHLMGYVIGKQGSRLRE 154
Query: 194 IQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL-- 251
I++ S A + V + P ++R++ + G A + H+ + V Q +L
Sbjct: 155 IEDLSAARL-VAGPQQLPM---SNDRVLCITGVADAI---------HIATYYVGQTILTC 201
Query: 252 -PLFEKT----YNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQ- 305
P ++ Y + V + Q + S R S L P
Sbjct: 202 EPKYKNKKTIFYQPNPLHSVLVNNYGIAIQHQQHHQYHPGDKIKRSKSRMSPVLPPTPNE 261
Query: 306 --LESRYRLSGISIYGQDPALSTIRSSALG-----------RASGPIVTQITQTMQIPIS 352
L+ + G+ G P+ STI +S P VT + Q + I S
Sbjct: 262 MMLQPSHNNGGVIPIG--PSGSTISNSTSAVVLPHVRIVEIMNPQPQVTPVVQEIFIEDS 319
Query: 353 YAEDIIGVGGTSIENIRRTSGAIITVQE 380
++IG GG SI I+ ++G I + E
Sbjct: 320 MVGNVIGKGGKSIAQIKGSTGCSIQISE 347
>gi|154355000|ref|NP_003676.2| far upstream element-binding protein 2 [Homo sapiens]
gi|332852032|ref|XP_512315.3| PREDICTED: far upstream element-binding protein 2 [Pan troglodytes]
gi|402903923|ref|XP_003914804.1| PREDICTED: far upstream element-binding protein 2 [Papio anubis]
gi|313104306|sp|Q92945.4|FUBP2_HUMAN RecName: Full=Far upstream element-binding protein 2;
Short=FUSE-binding protein 2; AltName: Full=KH
type-splicing regulatory protein; Short=KSRP; AltName:
Full=p75
gi|119589503|gb|EAW69097.1| KH-type splicing regulatory protein (FUSE binding protein 2),
isoform CRA_c [Homo sapiens]
Length = 711
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 210
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 211 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 267
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 268 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 309
>gi|149716720|ref|XP_001496194.1| PREDICTED: far upstream element-binding protein 2 [Equus caballus]
Length = 667
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 71 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 130
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 131 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 187
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 188 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 229
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 51 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 109
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 110 RSVSLTGAPESVQKAKMMLDD 130
>gi|149028151|gb|EDL83589.1| KH-type splicing regulatory protein, isoform CRA_b [Rattus
norvegicus]
Length = 721
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 211
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 212 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 268
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 269 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 310
>gi|348537887|ref|XP_003456424.1| PREDICTED: RNA-binding protein Nova-1-like isoform 1 [Oreochromis
niloticus]
Length = 496
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 52 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 111
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + VR + VS L P+ V+ A +L+VP++ A
Sbjct: 112 TVEALNGVHDFIAEKVREMPQSTQKTEPVSILQPQTTVNPDRVKQA----KLIVPNSTAG 167
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K++ E SGA V++ + P + ER+V + GE + KA+E +V +
Sbjct: 168 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTISGEPEQNRKAVEIIVQKI 224
Query: 242 RK 243
++
Sbjct: 225 QE 226
>gi|313229517|emb|CBY18332.1| unnamed protein product [Oikopleura dioica]
Length = 488
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 23/176 (13%)
Query: 78 CV-FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP 136
CV R++ +VG++IGRKG I + E++ +K+ G +RIV +SG
Sbjct: 22 CVTIRLLFKGNQVGTLIGRKGSKIMQIREESGCEVKI-KGNEKDIERIVSVSG------- 73
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAF---CSVRLLVPSTQAINLIGKQGSLIKS 193
SPA R +V E D++ +G ++ ++VP+ Q ++IGK G IK
Sbjct: 74 -SPA--GVTRAIGKVGEFVEADLNDGLTGRTTKIPVTLHMIVPTGQCGSIIGKGGFRIKE 130
Query: 194 IQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
I+E +G +V++ A+E E+++ + GE + ++ VG + + ++++G
Sbjct: 131 IREKTGCNVKI--ANE--LLPASTEKLITLYGEP----RVIQQCVGSICQVMIEEG 178
>gi|261197389|ref|XP_002625097.1| KH domain RNA-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239595727|gb|EEQ78308.1| KH domain RNA-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239606718|gb|EEQ83705.1| KH domain RNA-binding protein [Ajellomyces dermatitidis ER-3]
gi|327358051|gb|EGE86908.1| KH domain RNA-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 363
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 142/345 (41%), Gaps = 46/345 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P+
Sbjct: 46 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG------PLQG 99
Query: 140 AMDAAVRVFK-RVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A V K + G P+ + S VRLL+ Q +IG+QG IK IQ+ S
Sbjct: 100 TAKAYAIVAKGLLEGAPQLGMGGVVSNTGTHPVRLLISHNQMGTIIGRQGLKIKYIQDAS 159
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E ERIVE+QG + +E V + K L+D Y
Sbjct: 160 G--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTGTVLY 211
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
N ++ V +SL + T A S R + Q R S
Sbjct: 212 NPAV--RASVGGGPMNNSLGSGT--AAGGYGGRSYNRTGNGADFSDQTGGYNRRS----- 262
Query: 319 GQDPALSTIRSSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRTSG 373
S A R P+VT+ TQ + IP IIG GG+ I IRR+SG
Sbjct: 263 ---------NSDAANRGI-PLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKISEIRRSSG 312
Query: 374 AIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
A I++ ++ P + T E I G+++ + A L+ E + K
Sbjct: 313 ARISIAKA---PHDETGERMFTIMGSAAANEKALYLLYENLEAEK 354
>gi|119589502|gb|EAW69096.1| KH-type splicing regulatory protein (FUSE binding protein 2),
isoform CRA_b [Homo sapiens]
Length = 747
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 210
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 211 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 267
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 268 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 309
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 131 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 189
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 190 RSVSLTGAPESVQKAKMMLDD 210
>gi|410952456|ref|XP_003982896.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
isoform 2 [Felis catus]
Length = 580
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P ++GP +A P ++ P + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 384 PPTSGPPSAMTPPYPQFEQAPETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI- 442
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P +PD R+V+I+G PEA A R++ ++ EN V K +
Sbjct: 443 -APAEAPDAKVRMVIITGP--PEA----QFKAQGRIYGKIKE--ENFVSPKEEVKLEAHI 493
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE 226
R VPS A +IGK G + +Q S A V V+ D+ P D+ +V++ G
Sbjct: 494 R--VPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTP--DENDQVVVKITGH 543
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL--DGPVSSPDRIVLISGKEE 132
P R++VP VG+IIG++G I+ + T+++I V + ++ I ++S E
Sbjct: 193 PCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPE- 251
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
AA + + D+ +++L + LIGK+G +K
Sbjct: 252 -------GTSAACKSILEIMHKEAQDIKFTEE----IPLKILAHNNFVGRLIGKEGRNLK 300
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
I++++ + + E Y ER + ++G KA E ++ +R+
Sbjct: 301 KIEQDTDTKITISPLQELTLY--NPERTITVKGNVETCAKAEEEIMKKIRE 349
>gi|380800867|gb|AFE72309.1| far upstream element-binding protein 2, partial [Macaca mulatta]
Length = 660
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 100 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 159
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 160 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 216
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 217 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 258
>gi|148232337|ref|NP_001090834.1| far upstream element (FUSE) binding protein 3 [Xenopus (Silurana)
tropicalis]
gi|134023819|gb|AAI35377.1| fubp3 protein [Xenopus (Silurana) tropicalis]
Length = 546
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 88/373 (23%), Positives = 162/373 (43%), Gaps = 51/373 (13%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 85 VPDKMVGFIIGRGGEQISRIQTESGCKIQIAPDSGGMPERPCVLTGT--PES-IEQAKRL 141
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P ND+D ++ +L+P+++ +IGK G IK +QE +G
Sbjct: 142 LGQIVDRCRNGPGFHNDMDGNST-----VQEILIPASKVGLVIGKGGETIKQLQERTG-- 194
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNAS 261
V+++ + P D + + + G+ KV +A + V+ +R+ DQ +++
Sbjct: 195 VKMIMIQDGPLPTGAD-KPLRITGDPFKVQQARDLVLEIIRE--KDQADFRGIRSDFSSR 251
Query: 262 I---SQERQVETWA--------DKSSLHAATQSAISTEYTPSTRRESLFLEREPQL---- 306
I S E V +A + + + ++ P + + ER Q+
Sbjct: 252 IGGGSVEVSVPRFAVGIIIGRNGEMIKKIQNDAGVRIQFKPD---DGISPERAAQVMGLP 308
Query: 307 ----ESRYRLSGISIYGQD----PALSTIRSSALGRASGPIVT-----QITQTMQIPISY 353
+ + ++ + + Q+ AL+ R R + T +IT T +P
Sbjct: 309 DLCQHAAHIINELILTAQERDGFGALALARGRGRSRGDWNLSTPGSMQEITYT--VPADK 366
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+IG GG +I+NI + SGA + +Q + P I+G Q++LA+ LI E +
Sbjct: 367 CGLVIGKGGENIKNINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIELARHLIDEKV 426
Query: 411 NNHKESITSSYGQ 423
SS+GQ
Sbjct: 427 GGPTIGGPSSFGQ 439
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 14/137 (10%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAP 136
V +++P KVG +IG+ GE IK+ E T + I + DGP+ + D+ + I+G +P
Sbjct: 165 VQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPLPTGADKPLRITG--DP-FK 221
Query: 137 VSPAMDAAVRVFKR-----VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
V A D + + + G+ +D ++ G SV + VP +IG+ G +I
Sbjct: 222 VQQARDLVLEIIREKDQADFRGI-RSDFSSRIGGG---SVEVSVPRFAVGIIIGRNGEMI 277
Query: 192 KSIQENSGASVRVLSAD 208
K IQ ++G ++ D
Sbjct: 278 KKIQNDAGVRIQFKPDD 294
>gi|403256748|ref|XP_003921014.1| PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding
protein 3 [Saimiri boliviensis boliviensis]
Length = 611
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 153/371 (41%), Gaps = 60/371 (16%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 186 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-IEQAKRL 242
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P ND+D+ ++ +L+P+++ +IG+ G IK +QE +G
Sbjct: 243 LGQIVDRCRNGPGFHNDIDSNST-----IQEILIPASKVGLVIGRGGETIKQLQERTG-- 295
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNAS 261
V+++ + P D + + + G+ KV + +K ++
Sbjct: 296 VKMVMIQDGPLPTGAD-KPLRITGDPFKVQ---------------------VGKKPWHDG 333
Query: 262 ISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQD 321
IS ER + A I E L L + R G+++
Sbjct: 334 ISPERAAQVMGPPDRCQHAAH--IINE---------LILT----AQERDGFGGLAVARG- 377
Query: 322 PALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES 381
++G G V +IT T +P +IG GG +I++I + SGA + +Q +
Sbjct: 378 -RGRGRGDWSVGAPGG--VQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRN 432
Query: 382 ---RGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPSYPQLGNS 438
P+ I+G Q+++A+QLI E + ++GQ P+ P +
Sbjct: 433 PPPNSDPNLRRFTIRGIPQQIEVARQLIDEKVGGTSLGAPGAFGQSPFSQPPAPPH--QN 490
Query: 439 SYPSSSLSTQP 449
++P S P
Sbjct: 491 TFPPRSSGCFP 501
>gi|345780248|ref|XP_003431966.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
[Canis lupus familiaris]
Length = 441
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P ++GP +A P ++ P + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 245 PPTSGPPSAMTPPYPQFEQAPQTETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI- 303
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P +PD R+V+I+G PEA A R++ ++ EN V K +
Sbjct: 304 -APAEAPDAKVRMVIITGP--PEA----QFKAQGRIYGKIKE--ENFVSPKEEVKLEAHI 354
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE 226
R VPS A +IGK G + +Q S A V V+ D+ P D+ +V++ G
Sbjct: 355 R--VPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTP--DENDQVVVKITGH 404
>gi|395750296|ref|XP_002828567.2| PREDICTED: far upstream element-binding protein 2 [Pongo abelii]
Length = 757
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 197 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 256
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 257 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 313
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 314 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 355
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 177 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 235
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 236 RSVSLTGAPESVQKAKMMLDD 256
>gi|345566886|gb|EGX49826.1| hypothetical protein AOL_s00076g710 [Arthrobotrys oligospora ATCC
24927]
Length = 379
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 143/355 (40%), Gaps = 38/355 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G + A
Sbjct: 51 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGNLDGVAKAY- 109
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
AM A V +P + VRLL+ Q +IG+QG IK IQ+ SG
Sbjct: 110 AMVAQTLVDSPPGAIPTTPMGTHP-------VRLLISHNQMGTIIGRQGLKIKHIQDVSG 162
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
VR+++ E ERIVE+QG A + +A + + K LVD YN
Sbjct: 163 --VRMVAQKE--MLPQSTERIVEVQGSADGIRQA----IWEIGKCLVDDWQRGTGTILYN 214
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
++ ++ S ++ S IS ++ F P +G
Sbjct: 215 PAVR--------SNTSHGTGSSPSVISNGGAGTSGPTDRFTNERPNRGPVRTGNGTDFSE 266
Query: 320 QDPAL-STIRSSALGRASGPIVTQ------ITQTMQIPISYAEDIIGVGGTSIENIRRTS 372
P+ S + RAS P TQ + IP IIG GG+ I IR++S
Sbjct: 267 PSPSFPRRGHSDSTSRASAPAPNTENGEELQTQNISIPADMVGCIIGRGGSKISEIRKSS 326
Query: 373 GAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHKESITSSYGQ 423
GA I++ ++ P + T E I G+ + A L+ E + K + GQ
Sbjct: 327 GARISIAKA---PHDDTGERMFTIVGSPQSNEKALYLLYENLEAEKTRRSQGSGQ 378
>gi|302654659|ref|XP_003019130.1| hypothetical protein TRV_06814 [Trichophyton verrucosum HKI 0517]
gi|291182834|gb|EFE38485.1| hypothetical protein TRV_06814 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 130/309 (42%), Gaps = 41/309 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P S
Sbjct: 62 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG---PLQGTSK 118
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A + + G P+ + SVRLL+ Q +IG+QG IK IQ+ SG
Sbjct: 119 AYSIVAKSL--LEGAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQGLKIKYIQDASG 176
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
VR+++ E ERIVE+QG + +E + + K L+D YN
Sbjct: 177 --VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAIWEIGKCLIDDWQRGTGTVLYN 228
Query: 260 ASISQERQVETWADKSSLHAAT-QSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIY 318
++ ++S+ + + Q A++ + S R + +
Sbjct: 229 PAV-----------RASVGSGSGQGAVTGTNSSYGGSSR----------SYNRTGNGADF 267
Query: 319 GQDPALSTIRSSALGRASG-PIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRTS 372
P+ + R + G P+VT+ TQ + IP IIG GGT I IRR+S
Sbjct: 268 SDHPSSYSRRGNNDNPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGTKISEIRRSS 327
Query: 373 GAIITVQES 381
GA I++ ++
Sbjct: 328 GARISIAKA 336
>gi|410950239|ref|XP_004001515.1| PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding
protein 2 [Felis catus]
Length = 667
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 71 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 130
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 131 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 187
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 188 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 229
Score = 38.1 bits (87), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 51 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 109
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 110 RSVSLTGAPESVQKAKMMLDD 130
>gi|355707685|gb|AES03033.1| neuro-oncological ventral antigen 2 [Mustela putorius furo]
Length = 171
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 3 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 62
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +L+VP++ A
Sbjct: 63 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAG 115
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 116 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 169
>gi|149028150|gb|EDL83588.1| KH-type splicing regulatory protein, isoform CRA_a [Rattus
norvegicus]
Length = 729
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 211
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 212 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 268
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 269 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 310
>gi|350580630|ref|XP_003123158.3| PREDICTED: far upstream element-binding protein 2-like [Sus scrofa]
Length = 747
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 210
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 211 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 267
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 268 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 309
>gi|189528952|ref|XP_001923490.1| PREDICTED: RNA-binding protein Nova-1 isoform 1 [Danio rerio]
Length = 496
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 52 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 111
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + VR + VS L P+ V+ A +L+VP++ A
Sbjct: 112 TVEALNNVHDFIAEKVREMPQSAQKTEPVSILQPQTTVNPDRVKQA----KLIVPNSTAG 167
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K++ E SGA V++ + P + ER+V + GE + KA+E +V +
Sbjct: 168 LIIGKGGATVKAVMEQSGAWVQL---SQKPDGINLQERVVTISGEPEQNRKAVEIIVQKI 224
Query: 242 RK 243
++
Sbjct: 225 QE 226
>gi|163954948|ref|NP_034743.3| far upstream element-binding protein 2 [Mus musculus]
gi|341940718|sp|Q3U0V1.2|FUBP2_MOUSE RecName: Full=Far upstream element-binding protein 2;
Short=FUSE-binding protein 2; AltName: Full=KH
type-splicing regulatory protein; Short=KSRP
Length = 748
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 211
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 212 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 268
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 269 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 310
>gi|154319404|ref|XP_001559019.1| hypothetical protein BC1G_02183 [Botryotinia fuckeliana B05.10]
Length = 453
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 97/418 (23%), Positives = 168/418 (40%), Gaps = 62/418 (14%)
Query: 18 DPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGH 77
D Q +T ++PTTE+ P S +ALP +E W
Sbjct: 82 DAQGDTEVVDAPTTEAAQPIQTTVPAKTEGASSGNALPH----------DESGW------ 125
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPV 137
R ++ + ++IG+ GE + + + A+ V D + +RI+ +SG
Sbjct: 126 IHVRSVITSAEAATVIGKGGENVSLVRKLSGAKCTVSDYQKGAVERILTVSG-------- 177
Query: 138 SPAMDAAVRVFKRVSGLPEND-VDAKA-SGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
+DA + F + N+ ++A + S + +RLL+P ++IGK G IK IQ
Sbjct: 178 --VVDAVAKAFGLIIRTLNNEPLEAPSDSTSKTYPLRLLIPHILIGSIIGKGGVRIKEIQ 235
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFE 255
E SGA L+A ++ ++ + +V VL +AV H+ + V +
Sbjct: 236 EASGAR---LNASDSYLPLSTERSLV--------VLGVADAV--HIATYYVGSTLFEQLT 282
Query: 256 KTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP-QLESRYRLSG 314
+ + + +A +S A +T R L + P + +
Sbjct: 283 ERFGGPAA-----SAYASRSGGPAGVVPGAMPNHTVKDRH--LTNSQLPLHITGGHASPA 335
Query: 315 ISIYG----QDPALSTIRSSALGRASGP--------IVTQ-ITQTMQIPISYAEDIIGVG 361
+ YG Q P + A+GP I Q +TQ + IP IIG G
Sbjct: 336 VGGYGGVGPQQPQQAGHAVPQPHGATGPQGQPMPGAIPGQPLTQQIFIPNDMVGAIIGKG 395
Query: 362 GTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITS 419
G I IR+ SG++I + E + +E V I GT+ Q+A ++ + + + +S
Sbjct: 396 GAKINEIRQLSGSVIKINEPQDNSNERLVTITGTAECNQMALYMLYSRLESERHRASS 453
>gi|359067148|ref|XP_003586314.1| PREDICTED: far upstream element-binding protein 2-like, partial
[Bos taurus]
Length = 679
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 98 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 157
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 158 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 214
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 215 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 256
>gi|74224349|dbj|BAE33750.1| unnamed protein product [Mus musculus]
Length = 748
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 211
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 212 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 268
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 269 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 310
>gi|355697562|gb|AES00713.1| KH-type splicing regulatory protein [Mustela putorius furo]
Length = 663
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 127
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 128 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 184
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 185 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 226
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 48 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 106
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 107 RSVSLTGAPESVQKAKMMLDD 127
>gi|410952458|ref|XP_003982897.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
isoform 3 [Felis catus]
Length = 441
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P ++GP +A P ++ P + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 245 PPTSGPPSAMTPPYPQFEQAPETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI- 303
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P +PD R+V+I+G PEA A R++ ++ EN V K +
Sbjct: 304 -APAEAPDAKVRMVIITGP--PEA----QFKAQGRIYGKIKE--ENFVSPKEEVKLEAHI 354
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE 226
R VPS A +IGK G + +Q S A V V+ D+ P D+ +V++ G
Sbjct: 355 R--VPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTP--DENDQVVVKITGH 404
>gi|348550680|ref|XP_003461159.1| PREDICTED: far upstream element-binding protein 2 [Cavia porcellus]
Length = 718
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 122 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 181
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 182 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 238
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 239 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 280
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 102 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 160
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 161 RSVSLTGAPESVQKAKMMLDD 181
>gi|314122361|ref|NP_001186642.1| RNA-binding protein Nova-1 isoform 2 [Gallus gallus]
gi|114652477|ref|XP_001170656.1| PREDICTED: RNA-binding protein Nova-1 isoform 2 [Pan troglodytes]
gi|224051380|ref|XP_002200538.1| PREDICTED: RNA-binding protein Nova-1 isoform 1 [Taeniopygia
guttata]
gi|291403673|ref|XP_002718161.1| PREDICTED: neuro-oncological ventral antigen 1 isoform 2
[Oryctolagus cuniculus]
gi|296214718|ref|XP_002753742.1| PREDICTED: RNA-binding protein Nova-1 isoform 2 [Callithrix
jacchus]
gi|297694851|ref|XP_002824681.1| PREDICTED: RNA-binding protein Nova-1-like isoform 2 [Pongo abelii]
gi|332223199|ref|XP_003260755.1| PREDICTED: RNA-binding protein Nova-1-like isoform 2 [Nomascus
leucogenys]
gi|344273489|ref|XP_003408554.1| PREDICTED: RNA-binding protein Nova-1-like isoform 1 [Loxodonta
africana]
gi|345804243|ref|XP_860979.2| PREDICTED: RNA-binding protein Nova-1 isoform 6 [Canis lupus
familiaris]
gi|395838272|ref|XP_003792041.1| PREDICTED: RNA-binding protein Nova-1-like isoform 2 [Otolemur
garnettii]
gi|410962022|ref|XP_003987576.1| PREDICTED: RNA-binding protein Nova-1-like isoform 2 [Felis catus]
gi|426376606|ref|XP_004055088.1| PREDICTED: RNA-binding protein Nova-1-like isoform 2 [Gorilla
gorilla gorilla]
gi|122064615|sp|Q2PFW9.1|NOVA1_MACFA RecName: Full=RNA-binding protein Nova-1; AltName:
Full=Neuro-oncological ventral antigen 1; AltName:
Full=Ventral neuron-specific protein 1
gi|84579135|dbj|BAE73001.1| hypothetical protein [Macaca fascicularis]
gi|90079349|dbj|BAE89354.1| unnamed protein product [Macaca fascicularis]
gi|380813128|gb|AFE78438.1| RNA-binding protein Nova-1 isoform 2 [Macaca mulatta]
Length = 483
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + +R + VS L P+ V+ V+++VP++ A
Sbjct: 105 TVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDR----IKQVKIIVPNSTAG 160
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K+I E SGA V++ + P + ER+V + GE + KA+E ++ +
Sbjct: 161 LIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKI 217
Query: 242 RK 243
++
Sbjct: 218 QE 219
>gi|417412327|gb|JAA52553.1| Putative k-logy type rna binding protein, partial [Desmodus
rotundus]
Length = 689
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 93 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 152
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 153 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 209
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 210 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 251
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 73 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 131
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 132 RSVSLTGAPESVQKAKMMLDD 152
>gi|397497276|ref|XP_003846118.1| PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding
protein 2 [Pan paniscus]
Length = 738
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 177 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLD- 235
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
+ R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 236 --DIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 293
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 294 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 335
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 157 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 215
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 216 RSVSLTGAPESVQKAKMMLDD 236
>gi|348558005|ref|XP_003464809.1| PREDICTED: RNA-binding protein Nova-1 isoform 2 [Cavia porcellus]
Length = 483
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + +R + VS L P+ V+ V+++VP++ A
Sbjct: 105 TVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDR----IKQVKIIVPNSTAG 160
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K+I E SGA V++ + P + ER+V + GE + KA+E ++ +
Sbjct: 161 LIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKI 217
Query: 242 RK 243
++
Sbjct: 218 QE 219
>gi|225000564|gb|AAI72604.1| Neuro-oncological ventral antigen 2 [synthetic construct]
Length = 583
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 24/173 (13%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 126 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 185
Query: 137 VSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAINLIG 185
V + VR + PE N AK + +L+VP++ A +IG
Sbjct: 186 VHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQA-------KLIVPNSTAGLIIG 238
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
K G+ +K++ E SGA V++ + P + ER+V + GE +V KA+ A+V
Sbjct: 239 KGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIV 288
>gi|156100765|ref|XP_001616076.1| RNA binding protein [Plasmodium vivax Sal-1]
gi|148804950|gb|EDL46349.1| RNA binding protein, putative [Plasmodium vivax]
Length = 810
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 35/208 (16%)
Query: 61 DAAAVPEEK-----KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD 115
D +VP+E+ K+ CV R ++ V IIG+ G IK+ T A ++D
Sbjct: 327 DNFSVPKERNLLLHKYGKEVSACVIRFVLDVETTAWIIGKAGCHIKEIRTITGAGAVIVD 386
Query: 116 GP-----VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
P V + DRI+ +SG E + A+++ R E +++
Sbjct: 387 APDNIENVKTCDRILTLSGSAENKF-------NALKLIVRQMEEREKNINH--------P 431
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+R+LVP A LIG++GS+IK I E SG+ ++V E +E+E++V + G
Sbjct: 432 MRMLVPGKAASFLIGRKGSIIKYITEMSGSQIQVAKNKE-----SENEKLVLISGSPDSK 486
Query: 231 LKALEAVVGHLRKF----LVDQGVL-PL 253
+ A V+ L ++ +V +G+L PL
Sbjct: 487 ILASILVLQKLEEYENPAIVREGLLIPL 514
>gi|125559909|gb|EAZ05357.1| hypothetical protein OsI_27561 [Oryza sativa Indica Group]
gi|125601956|gb|EAZ41281.1| hypothetical protein OsJ_25788 [Oryza sativa Japonica Group]
Length = 700
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 27/193 (13%)
Query: 73 GWPGHCVFRMI-VPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLIS 128
G PG R+I VP KVG +IG+ GE I+ ++ A+I++ + ++P R V +
Sbjct: 146 GAPGQETSRIINVPNNKVGVLIGKSGETIRNLQMNSGAKIQITKDAEADANAPTRSVELV 205
Query: 129 GKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA----AFCS-------VRLLVPS 177
G E ++D A R+ K V + DA S A F S +LVP
Sbjct: 206 GTLE-------SIDKAERLIKNVIA----EADAGGSPALIARGFGSGQSGSEQFEMLVPD 254
Query: 178 TQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+ +IGK G IK++Q SGA ++++ P VT ER V + G ++ A + +
Sbjct: 255 NKVGLIIGKGGETIKTLQTRSGARIQLIP-QHPPEGVTLTERTVRITGNKKQIEAAKDMI 313
Query: 238 VGHLRKFLVDQGV 250
+ + G
Sbjct: 314 KQAMSQTFSRHGA 326
>gi|393907134|gb|EFO25357.2| hypothetical protein LOAG_03127 [Loa loa]
Length = 341
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 108/242 (44%), Gaps = 37/242 (15%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+R+LV S+ A +IG+QGS IK ++E G ++V + + P TE R+V ++G K+
Sbjct: 118 LRVLVHSSHAGAVIGRQGSKIKEMKEELGVQMKVFA--QCPPQSTE--RVVSIKGAPDKI 173
Query: 231 LKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYT 290
+ + ++ L++ + +GV +E S + + SA Y
Sbjct: 174 IACVNHIMNMLKEIPI-KGVTKPYE-------------------SMFYDPSYSAEYGGYP 213
Query: 291 PSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPI-VTQITQTMQI 349
P + R P + Y G + Q + + AL GP TQ+T I
Sbjct: 214 PDRNYRGPMI-RGPMAMTSYGNYGRNFPRQIGGRGPLSAVALPPYMGPEESTQVT----I 268
Query: 350 PISYAEDIIGVGGTSIENIRRTSGAIITV---QESRGLPDEITVEIKGTSSQVQLAQQLI 406
P IIG GG I +R SGA I V QES E + I GTS+ +Q AQ L+
Sbjct: 269 PNELGGTIIGKGGERINRVREESGAQIVVGPQQES----GERIITITGTSTAIQTAQYLL 324
Query: 407 QE 408
Q+
Sbjct: 325 QQ 326
>gi|346971553|gb|EGY15005.1| Poly(rC)-binding protein [Verticillium dahliae VdLs.17]
Length = 514
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 148/370 (40%), Gaps = 46/370 (12%)
Query: 59 GPDAAAVPE-EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP 117
GPD P+ E+++ R IV + G IIG+ G+ + ++T + V
Sbjct: 29 GPDGEPAPKTEEEYA--QAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVV 86
Query: 118 VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKR--VSGLPENDVDAKASGAAFCSVRLLV 175
DR++ I+G E A+ A + + + G P + ++LL+
Sbjct: 87 QGVHDRVLTITGGCE-------AISRAYAIVAQALLEGAPSLGMGGVPQSNGTHPIKLLI 139
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALE 235
Q +IG+QG IK IQ+ SG VR+++ E ERIVE+QG +
Sbjct: 140 SHNQMGTIIGRQGLKIKHIQDVSG--VRMVAQKE--MLPQSTERIVEVQGTP----DGIR 191
Query: 236 AVVGHLRKFLVDQGVLPLFEKTYNASI-SQERQVETWADKSSLHAATQSAISTEYTPSTR 294
A + + K LVD YN + +Q S + +T S EY+
Sbjct: 192 AAIWEISKCLVDDWQRGTGTVLYNPVVRTQPGSTPAVGGTSPSYPSTGGGRSQEYS---- 247
Query: 295 RESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQ------ITQTMQ 348
P++ + S G + RS + + GP TQ +
Sbjct: 248 --------SPRVLRTGNGADFSSNGGGQRPYSRRSDSDAASRGPPTHDENGEELQTQNIS 299
Query: 349 IPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQ 404
IP IIG G+ I IR+TSGA I++ ++ P + T E I GTS + A
Sbjct: 300 IPADMVGCIIGRAGSKISEIRKTSGARISIAKA---PHDETGERMFTIMGTSKANESALF 356
Query: 405 LIQEYMNNHK 414
L+ E + K
Sbjct: 357 LLYENLEAEK 366
>gi|148706278|gb|EDL38225.1| mCG140911, isoform CRA_b [Mus musculus]
Length = 773
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 177 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 236
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 237 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 293
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 294 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 335
>gi|256078989|ref|XP_002575774.1| far upstream (fuse) binding protein [Schistosoma mansoni]
gi|360043995|emb|CCD81541.1| putative far upstream (fuse) binding protein [Schistosoma mansoni]
Length = 530
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IG+ GE I + DT+ ++++ +P+R V ++G + + A
Sbjct: 105 IPDRYVGLVIGKGGEQITQLQNDTQCKVQISQ--AGTPERTVTLTGTPQQ---IDHAKQM 159
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ +R A S + ++ ++VP +A +IGK G IK++QE +G +
Sbjct: 160 IGDIIERAGKNGTPTTPAYNSTGSITTIEMMVPGLKAGLVIGKNGETIKNLQEENGVKMV 219
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
++ P T +++ + + GE A+V KA +AV+
Sbjct: 220 LIQQSNNP---TPEDKPLRISGEPARVEKARQAVL 251
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
M+VP LK G +IG+ GE IK E+ ++ VL ++P D+ + ISG+
Sbjct: 187 IEMMVPGLKAGLVIGKNGETIKNLQEENGVKM-VLIQQSNNPTPEDKPLRISGEPARVEK 245
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A+ + R G D + + + VP+ +A +IGK G IK I
Sbjct: 246 ARQAVLVLINSRDRPGGSMHYGYDGQETS------QYAVPAEKAGLVIGKGGESIKEICR 299
Query: 197 NSGASVRV 204
SGA V +
Sbjct: 300 VSGAHVEI 307
>gi|308465473|ref|XP_003094996.1| hypothetical protein CRE_23697 [Caenorhabditis remanei]
gi|308246261|gb|EFO90213.1| hypothetical protein CRE_23697 [Caenorhabditis remanei]
Length = 580
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 21/172 (12%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEE----PEAP 136
+IVP + G IIG+ GE+IK+ +T +I+ D +S DR+ +I G +
Sbjct: 244 VIVPRVSAGMIIGKGGEMIKRLAMETGTKIQFKPDANPNSEDRVAVIMGTRDQIYRATER 303
Query: 137 VSPAMDAAVRVFKRVSG--LPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
++ ++ A++ + SG L N++ +++ + VP+T+ +IGK G IK I
Sbjct: 304 ITEIVNRAIKNGQAGSGSILGGNNILGQST------FYMHVPATKCGLVIGKGGENIKQI 357
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
+ +SGAS + +A E EDE++ E++G ++ A HL K V
Sbjct: 358 ERDSGASCGLAAASEQK---NEDEKVFEIKGTQYQIHHA-----SHLVKIKV 401
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 339 IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA---IITVQESRGLPDEITVEIKGT 395
I+ Q T M +P + +IG GG +I+ I R SGA + E + DE EIKGT
Sbjct: 328 ILGQSTFYMHVPATKCGLVIGKGGENIKQIERDSGASCGLAAASEQKN-EDEKVFEIKGT 386
Query: 396 SSQVQLAQQLIQ 407
Q+ A L++
Sbjct: 387 QYQIHHASHLVK 398
>gi|150864547|ref|XP_001383407.2| PAB1 binding protein [Scheffersomyces stipitis CBS 6054]
gi|149385803|gb|ABN65378.2| PAB1 binding protein [Scheffersomyces stipitis CBS 6054]
Length = 500
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
P + RM PV + I+G+KGE I E RI V + + P+RI+ + G P
Sbjct: 102 PTYVSIRMYCPVKEASCIVGKKGEKINHIREKASVRINVSENLKNVPERIISVRG---PA 158
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
V+ A R L E + + + + ++++LVP +IGKQGS + I
Sbjct: 159 ENVARAFGLITRTI-----LDEPEDEPASMISQQYNLKILVPHPMIGFIIGKQGSKFREI 213
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQG 225
+ENS A L A E P + D RI+ + G
Sbjct: 214 EENSAAK---LKAAEQPLPYSTD-RILSITG 240
>gi|432887611|ref|XP_004074938.1| PREDICTED: far upstream element-binding protein 3-like [Oryzias
latipes]
Length = 562
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 7/161 (4%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAM 141
++VP VG IIGR GE+IKK D RI+ SPDR+ + G+ E +
Sbjct: 263 VVVPRFAVGIIIGRNGEMIKKIQNDAGVRIQFKQDDGISPDRVAQVMGQPEHCHHAVHLI 322
Query: 142 DAAVRVFKRVSGLP----ENDVDAKASGA-AFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+ V+ + G VD GA V VP+ + +IGK G IK+I+E
Sbjct: 323 NELVQTAQERDGYGVMGRRGRVDCNTGGAGGLQEVTYAVPADKCGLVIGKGGETIKNIKE 382
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
S A V + P + RI ++G ++ KA + +
Sbjct: 383 QSRAHVELQR--NPPPSTDPNVRIFSIRGTPQQLEKARQLI 421
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 11/166 (6%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIG+ GE I + +++ +I++ DR ++G E +
Sbjct: 89 VPDKMVGFIIGKGGEQISRIQQESGCKIQIASDSGGMLDRPCTLTGSPENIEQAKRLLSE 148
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ + G ND+D S ++L+P+ + +IGK G IK +QE +G +
Sbjct: 149 IIEQCRYGPGF-HNDMDGNGS-----IQQMLIPANKVGLVIGKGGETIKQLQERTGVQMM 202
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ D P T ++ + + G+ KV +A E VV +R DQG
Sbjct: 203 MIQDDPMP---TGADKPLRITGDPLKVQQARELVVKLIRD--KDQG 243
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 16/136 (11%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPV-SSPDRIVLISGKEEPEAPVS 138
+M++P KVG +IG+ GE IK+ E T ++ ++ D P+ + D+ + I+G +P V
Sbjct: 171 QMLIPANKVGLVIGKGGETIKQLQERTGVQMMMIQDDPMPTGADKPLRITG--DP-LKVQ 227
Query: 139 PAMDAAVRVFKRVSGLPENDVDAKASGAAF------CSVRLLVPSTQAINLIGKQGSLIK 192
A + V++ + ++ D + A F S+ ++VP +IG+ G +IK
Sbjct: 228 QARELVVKLIR-----DKDQGDFRTGRAEFGSKMGGTSLDVVVPRFAVGIIIGRNGEMIK 282
Query: 193 SIQENSGASVRVLSAD 208
IQ ++G ++ D
Sbjct: 283 KIQNDAGVRIQFKQDD 298
>gi|45383580|ref|NP_989608.1| far upstream element-binding protein 2 [Gallus gallus]
gi|25091747|sp|Q8UVD9.1|FUBP2_CHICK RecName: Full=Far upstream element-binding protein 2;
Short=FUSE-binding protein 2; AltName: Full=KH
type-splicing regulatory protein; Short=KSRP; AltName:
Full=Zipcode-binding protein 2
gi|18252632|gb|AAL66365.1|AF461020_1 zipcode-binding protein [Gallus gallus]
Length = 769
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G PEA V A
Sbjct: 215 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGS--PEA-VQKAKLM 271
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ R G P A+G +++P+ +A +IGK G IK +QE +G +
Sbjct: 272 LDDIVSRGRGGPPGQFHDYANGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMI 331
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
+ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 332 FIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 372
>gi|148706277|gb|EDL38224.1| mCG140911, isoform CRA_a [Mus musculus]
Length = 765
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 188 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 247
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 248 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 304
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 305 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 346
>gi|148222190|ref|NP_001086143.1| neuro-oncological ventral antigen 1 [Xenopus laevis]
gi|49258011|gb|AAH74252.1| MGC84002 protein [Xenopus laevis]
Length = 484
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 45 GEDGQFFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + +R + VS L P+ V+ V+++VP++ A
Sbjct: 105 TVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDR----IKQVKIIVPNSTAG 160
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K++ E SGA V++ + P + ER+V + GE + KA+E +V +
Sbjct: 161 LIIGKGGATVKAVMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELIVQKI 217
Query: 242 RK 243
++
Sbjct: 218 QE 219
>gi|426386866|ref|XP_004059901.1| PREDICTED: far upstream element-binding protein 2 [Gorilla gorilla
gorilla]
Length = 813
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 253 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 312
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 313 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 369
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 370 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 411
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 233 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 291
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 292 RSVSLTGAPESVQKAKMMLDD 312
>gi|1575607|gb|AAC50892.1| FUSE binding protein 2, partial [Homo sapiens]
Length = 652
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 95 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 154
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 155 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 211
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
++ V + RI+ G+ KV +A E V+ LR
Sbjct: 212 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILR 248
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGP----VSSPDRIVLISGKE 131
V +++P K G +IG+ GE IK+ E RA +K++ DG V P RI+ K
Sbjct: 179 VQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTNVDKPLRIIGDPYK- 235
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
V A + + + + V+ D + S + + VP +IG+ G +I
Sbjct: 236 -----VQQACEMVMDILRNVTKAGFGDRNEYGSRIG-GGIDVPVPRHSVGVVIGRSGEMI 289
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQG------EAAKVLKAL 234
K IQ ++G ++ D T E+I + G AA+++ L
Sbjct: 290 KKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEHAARIINDL 333
>gi|54648253|gb|AAH85004.1| KHSRP protein [Homo sapiens]
Length = 710
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 210
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 211 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 267
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 268 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 309
>gi|451172115|ref|NP_001094011.1| RNA-binding protein Nova-1 [Rattus norvegicus]
Length = 482
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 44 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 103
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + +R + VS L P+ V+ V+++VP++ A
Sbjct: 104 TIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDR----IKQVKIIVPNSTAG 159
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K+I E SGA V++ + P + ER+V + GE + KA+E ++ +
Sbjct: 160 LIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKI 216
Query: 242 RK 243
++
Sbjct: 217 QE 218
>gi|33516919|sp|Q80WA4.1|NOVA1_RAT RecName: Full=RNA-binding protein Nova-1; AltName:
Full=Neuro-oncological ventral antigen 1
gi|30230625|gb|AAP20872.1| neuro-oncological ventral antigen 1-like protein [Rattus
norvegicus]
Length = 474
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 44 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 103
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + +R + VS L P+ V+ V+++VP++ A
Sbjct: 104 TIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDR----IKQVKIIVPNSTAG 159
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K+I E SGA V++ + P + ER+V + GE + KA+E ++ +
Sbjct: 160 LIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKI 216
Query: 242 RK 243
++
Sbjct: 217 QE 218
>gi|355755365|gb|EHH59112.1| hypothetical protein EGM_09154, partial [Macaca fascicularis]
Length = 629
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 127
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 128 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 184
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 185 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 226
>gi|116192195|ref|XP_001221910.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88181728|gb|EAQ89196.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 375
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 122/310 (39%), Gaps = 40/310 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ I+G E +S
Sbjct: 52 LRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVYDRVLTITGGCEA---ISR 108
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A R + G P + ++LL+ Q +IG+QG IK IQ+ SG
Sbjct: 109 AYAVVARAL--LEGAPTIGMGGVVQSNGTHPIKLLISHNQMGTIIGRQGLKIKHIQDVSG 166
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
VR+++ E ERIVE+QG + +A+ + K LVD YN
Sbjct: 167 --VRMVAQKE--MLPQSTERIVEVQGTPEGIQRAIWEIC----KCLVDDWQRGAGTVLYN 218
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLS--GISI 317
+ TQ A + T + +R P SR + G
Sbjct: 219 PVVR-----------------TQGAGAAPGVTGT--TNFVQDRAPYGGSRVTRTGNGADF 259
Query: 318 YGQDPALSTIRSSALGRASGPIVTQ------ITQTMQIPISYAEDIIGVGGTSIENIRRT 371
P RS + A GP TQ + IP IIG GG+ I IR+T
Sbjct: 260 SNGGPRPYNRRSDSDAAARGPPTHDENGEEIQTQNISIPADMVGCIIGRGGSKISEIRKT 319
Query: 372 SGAIITVQES 381
SGA I++ ++
Sbjct: 320 SGARISIAKA 329
>gi|149051189|gb|EDM03362.1| neuro-oncological ventral antigen 1, isoform CRA_c [Rattus
norvegicus]
Length = 483
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + +R + VS L P+ V+ V+++VP++ A
Sbjct: 105 TIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDR----IKQVKIIVPNSTAG 160
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K+I E SGA V++ + P + ER+V + GE + KA+E ++ +
Sbjct: 161 LIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKI 217
Query: 242 RK 243
++
Sbjct: 218 QE 219
>gi|358412988|ref|XP_003582441.1| PREDICTED: far upstream element-binding protein 2-like [Bos taurus]
Length = 841
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 205 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 264
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 265 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 321
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 322 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 363
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 185 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 243
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 244 RSVSLTGAPESVQKAKMMLDD 264
>gi|326674258|ref|XP_003200102.1| PREDICTED: RNA-binding protein Nova-1 isoform 2 [Danio rerio]
Length = 517
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G E
Sbjct: 76 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 135
Query: 133 PEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLI 184
V + VR + VS L P+ V+ A +L+VP++ A +I
Sbjct: 136 ALNNVHDFIAEKVREMPQSAQKTEPVSILQPQTTVNPDRVKQA----KLIVPNSTAGLII 191
Query: 185 GKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
GK G+ +K++ E SGA V++ + P + ER+V + GE + KA+E +V +++
Sbjct: 192 GKGGATVKAVMEQSGAWVQL---SQKPDGINLQERVVTISGEPEQNRKAVEIIVQKIQE 247
>gi|359322253|ref|XP_542140.4| PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding
protein 2 [Canis lupus familiaris]
Length = 840
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 280 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 339
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 340 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 396
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 397 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 438
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 260 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 318
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 319 RSVSLTGAPESVQKAKMMLDD 339
>gi|355703041|gb|EHH29532.1| hypothetical protein EGK_09989, partial [Macaca mulatta]
Length = 625
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 127
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 128 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 184
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 185 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 226
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 48 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 106
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 107 RSVSLTGAPESVQKAKMMLDD 127
>gi|113677906|ref|NP_001038254.1| neuro-oncological ventral antigen 1 [Danio rerio]
gi|213624727|gb|AAI71499.1| Neuro-oncological ventral antigen 1 [Danio rerio]
gi|213627516|gb|AAI71495.1| Neuro-oncological ventral antigen 1 [Danio rerio]
Length = 495
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 52 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 111
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + VR + VS L P+ V+ +L+VP++ A
Sbjct: 112 TVEALNGVHNFIAEKVREMPQSSQKTEPVSILQPQTTVNPDR----IKQAKLIVPNSTAG 167
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K++ E SGA V++ + P + ER+V + GE + KA+E +V +
Sbjct: 168 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQNRKAVEIIVQKI 224
Query: 242 RK 243
++
Sbjct: 225 QE 226
>gi|432895613|ref|XP_004076075.1| PREDICTED: RNA-binding protein Nova-1-like isoform 1 [Oryzias
latipes]
Length = 503
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 18/177 (10%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 60 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 119
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + VR + VS L P+ V+ A +L+VP++ A
Sbjct: 120 TVEALNSVHNFIAEKVREMPQSAQKPEPVSILQPQTTVNPDRVKQA----KLIVPNSTAG 175
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
+IGK G+ +K++ E SGA V++ + P + ER+V + GE + KA+E +V
Sbjct: 176 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTISGEPEQNRKAVEIIV 229
>gi|327264009|ref|XP_003216809.1| PREDICTED: far upstream element-binding protein 2-like [Anolis
carolinensis]
Length = 699
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 142 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPESVQKAKMMLDD 201
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V R G P + ++G +++P+ +A +IGK G IK +QE +G +
Sbjct: 202 IV---SRGRGGPPSQFHDNSNGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMI 258
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 259 LIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 299
>gi|449304748|gb|EMD00755.1| hypothetical protein BAUCODRAFT_60994 [Baudoinia compniacensis UAMH
10762]
Length = 333
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 124/305 (40%), Gaps = 33/305 (10%)
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP 136
R IV + G IIG+ G+ + + + T R V DR++ ++G P
Sbjct: 17 QITLRAIVTSKEAGVIIGKAGQNVAELRDKTGVRAGVSKVVPGVHDRVLTVTG---PLTG 73
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+S A V G P+ + + +RLL+ Q +IG+QG IK IQ+
Sbjct: 74 ISEAYGLVADGL--VKGAPQMGMGGVVANPNTHPIRLLISHNQMGTIIGRQGLKIKQIQD 131
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
SG VR+++ E ERIVE+QG V KA V + K L+D
Sbjct: 132 ASG--VRMVAQKE--MLPQSTERIVEIQGTPDGVQKA----VWEIGKCLIDDQERGYGTV 183
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGIS 316
Y+ ++ + T A + + A + T +R R +G S
Sbjct: 184 LYSPAVRVQGAAPTPAMNGTGYGAPRGYNRTGNGADFTGSGAPYQR--------RSTGPS 235
Query: 317 IYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAII 376
G PA+ G + TQ + IP IIG GG+ I IR++SGA I
Sbjct: 236 DTGPPPAVE----------DGEDIQ--TQNISIPADMVGCIIGRGGSKISEIRKSSGARI 283
Query: 377 TVQES 381
++ ++
Sbjct: 284 SIAKA 288
>gi|392573629|gb|EIW66768.1| hypothetical protein TREMEDRAFT_65168 [Tremella mesenterica DSM
1558]
Length = 350
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 149/350 (42%), Gaps = 53/350 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R +V + G +IG+ G+ T D RA+ V G VS ++ G ++ VS
Sbjct: 27 LRALVSTKEAGILIGKGGQ----TIADIRAKTNVKAG-VSK-----VVPGVQDRVFSVSG 76
Query: 140 AMDAAVRVFKRVSGL----PENDVDAKAS-GAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
A+D F V+ L P +D AF SVRLL+ +IG+ G+ IK I
Sbjct: 77 AVDHVAAAFAEVARLLLETPLSDSSLPPPPVGAFTSVRLLISHNLMGTVIGRSGAKIKQI 136
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
Q+ SGA R++++ E ER+VE+QG ++A++ V + K L++ +
Sbjct: 137 QDESGA--RMVASKE--MLPQSTERVVEIQGS----VEAIKTAVLEIGKCLMED-----W 183
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQ--LESRYRL 312
E+ + D L + T RR S+ P R+
Sbjct: 184 ERNTGTVLYHP---GAAGDAGVLAGGLGAQTVTGGLGGIRRSSV----APSFGFGGERRM 236
Query: 313 SGISIYGQDPALSTIRSSALGRASGPIVTQ---ITQTMQIPISYAEDIIGVGGTSIENIR 369
SG P++S + + P+V TQ + IP IIG GGT I IR
Sbjct: 237 SG------RPSISAPSETRRVSDAPPMVNDPNLRTQNISIPSDMVGCIIGRGGTKITEIR 290
Query: 370 RTSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHKE 415
R SG+ I++ ++ P + T E I GT+ + A L+ + + KE
Sbjct: 291 RLSGSRISIAKA---PHDETGERMFTIVGTADATERALMLLYSQLESEKE 337
>gi|441629120|ref|XP_003281628.2| PREDICTED: far upstream element-binding protein 2-like [Nomascus
leucogenys]
Length = 805
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 238 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 297
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 298 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 354
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 355 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 396
>gi|348524725|ref|XP_003449873.1| PREDICTED: RNA-binding protein Nova-1-like [Oreochromis niloticus]
Length = 503
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 60 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 119
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + VR + VS L P+ V+ A +L+VP++ A
Sbjct: 120 TVEALNGVHNFIAEKVREMPQSAQKPEPVSILQPQTTVNPDRVKQA----KLIVPNSTAG 175
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K++ E SGA V++ + P + ER+V + GE + KA+E +V +
Sbjct: 176 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTISGEPEQNRKAVEIIVQKI 232
Query: 242 RK 243
++
Sbjct: 233 QE 234
>gi|325191228|emb|CCA26015.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 534
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 19/140 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSPDRIVLISGKEE 132
G ++M VP VG IIGR GE I+ + A I+++ +G +PDR V I+G EE
Sbjct: 166 GSQAYQMPVPRTYVGYIIGRGGETIRDLQARSGAHIQIVREEEGAAFTPDRFVSIAGTEE 225
Query: 133 PEAPVSPAMDAAVRVFK-----RVSGLPENDVDAKASGA---AFCSVRLLVPSTQAINLI 184
A+++A ++ + R SG D DA+ G+ ++ +LVP+ + +I
Sbjct: 226 -------AVESAKKLIQNLLDERASGGGSGD-DARYGGSNPDGSETLEILVPNDRVGLVI 277
Query: 185 GKQGSLIKSIQENSGASVRV 204
G+ G+ I+SIQ +G ++ V
Sbjct: 278 GRGGATIRSIQVRTGTNITV 297
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 337 GPIVTQITQTMQIPI--SYAEDIIGVGGTSIENIRRTSGAII-TVQESRG---LPDEITV 390
GP +Q Q+P+ +Y IIG GG +I +++ SGA I V+E G PD V
Sbjct: 160 GPGSADGSQAYQMPVPRTYVGYIIGRGGETIRDLQARSGAHIQIVREEEGAAFTPDRF-V 218
Query: 391 EIKGTSSQVQLAQQLIQEYMN 411
I GT V+ A++LIQ ++
Sbjct: 219 SIAGTEEAVESAKKLIQNLLD 239
>gi|32564028|ref|NP_491825.2| Protein F26B1.2, isoform c [Caenorhabditis elegans]
gi|373218907|emb|CCD64193.1| Protein F26B1.2, isoform c [Caenorhabditis elegans]
Length = 380
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
G R++V G+IIG+ GE IK+ + A ++V D ++P+R+ ++ E+
Sbjct: 31 GKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPD--SNTPERVCTVTADEK--- 85
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
+ + K V E++ + C VR+LV + A LIG+ GS IK ++
Sbjct: 86 -------TVLNILKDVLPRLEDNFSERDP----CEVRMLVHQSHAGALIGRNGSKIKELR 134
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
E A +++ + AP +R++ GE VL +E V+ L++ + P
Sbjct: 135 EKCSARLKIFTGC-AP---GSTDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYL 189
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T + IP IIG GG I IR+ SGA IT+++S G P+ I + IKGT Q+ AQ
Sbjct: 301 TAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQPERI-ITIKGTEQQIHSAQ 359
Query: 404 QLIQEYMNN 412
L+Q+ + N
Sbjct: 360 YLLQQCVRN 368
>gi|451997944|gb|EMD90409.1| hypothetical protein COCHEDRAFT_1225891 [Cochliobolus
heterostrophus C5]
Length = 365
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 138/347 (39%), Gaps = 42/347 (12%)
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP 136
R IV + G IIG+ G+ + ++T R V DR++ ++G +
Sbjct: 44 QLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGVHDRVLSVTGSL---SG 100
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+S A A + + G P + +RLL+ Q +IG+QG IK IQ+
Sbjct: 101 ISKAYGLAAKGL--LEGAPAMGMGGVIRTDGTHPIRLLISHNQMGTIIGRQGLKIKQIQD 158
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
SG VR+++ E ERIVE+QG A + KA V + K L+D
Sbjct: 159 ASG--VRMVAQKE--MLPQSTERIVEVQGSPAGIEKA----VWEIGKCLIDDHERGYGTV 210
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGIS 316
YN ++ + V + A T + F + P R SG
Sbjct: 211 LYNPAVRVQPGVGPGPAANGGSAPAGGMGGGRSYNRTGHGADFSDSPPAFSRR---SG-- 265
Query: 317 IYGQDPALSTIRSSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRT 371
S A R P T+ TQ + IP IIG GG+ I IR+T
Sbjct: 266 ------------SDAASRPPPPTHTEDGEEMQTQNISIPSDMVGCIIGRGGSKISEIRKT 313
Query: 372 SGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
S A I++ ++ P + T E I G++S + A L+ E + K
Sbjct: 314 SNARISIAKA---PHDDTGERMFTITGSASANEKALYLLYENLEAEK 357
>gi|221058238|ref|XP_002261627.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|194247632|emb|CAQ41032.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 756
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 30/202 (14%)
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP-----VSSPDRIVLISGKEE 132
CV R ++ V IIG+ G IK+ T A ++D P V + DRI+ +SG E
Sbjct: 347 CVIRFVLDVETTAWIIGKAGCHIKEIRTITGAGAVIVDAPDNIENVKTCDRILTLSGSAE 406
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
+ A+++ R E +++ +R+LVP A LIGK+GS+IK
Sbjct: 407 NKY-------NALKLIVRQMEEREKNINH--------PMRMLVPGKAASFLIGKKGSIIK 451
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF----LVDQ 248
I + SG+ ++V E +E+E++V + G + A V+ L ++ +V +
Sbjct: 452 YITDMSGSQIQVAKNKE-----SENEKLVLISGSPDSKILASILVLQKLEEYENPAIVRE 506
Query: 249 GVL-PLFEKTYNASISQERQVE 269
G+L PL E ++++ ++ V+
Sbjct: 507 GLLIPLNEVLFSSNNNKYANVK 528
>gi|147899778|ref|NP_001083390.1| far upstream element (FUSE) binding protein 3 [Xenopus laevis]
gi|38014650|gb|AAH60400.1| MGC68532 protein [Xenopus laevis]
Length = 546
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 161/373 (43%), Gaps = 51/373 (13%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + ++ +I++ P+R +++G PE+ + A
Sbjct: 85 VPDKMVGFIIGRGGEQISRIQAESGCKIQIAPDSGGMPERPCVLTGT--PES-IEQAKRL 141
Query: 144 AVRVFKRVSGLP--ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
++ R P ND+D ++ +L+P+++ +IGK G IK +QE +G
Sbjct: 142 LGQIVDRCRNGPGFHNDMDGSST-----VQEILIPASKVGLVIGKGGETIKQLQERTG-- 194
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNAS 261
V+++ + P D + + + G+ KV +A + V+ +R+ DQ +++
Sbjct: 195 VKMIMIQDGPLPTGAD-KPLRITGDPFKVQQARDLVLEIIRE--KDQADFRGIRSDFSSR 251
Query: 262 I---SQERQVETWA--------DKSSLHAATQSAISTEYTPSTRRESLFLEREPQL---- 306
I S E V +A + + + ++ P + L ER Q+
Sbjct: 252 IGGGSVEVSVPRFAVGIIIGRNGEMIKKIQNDAGVRIQFKPD---DGLSPERVAQVMGLP 308
Query: 307 ----ESRYRLSGISIYGQD----PALSTIRSSALGRASGPIVTQITQTMQ-----IPISY 353
+ + ++ + + Q+ LS R GR+ G +MQ +P
Sbjct: 309 DRCQHAAHIINELILTAQERDGFGGLSLARGR--GRSRGDWNLSTPGSMQEINYTVPADK 366
Query: 354 AEDIIGVGGTSIENIRRTSGAIITVQES---RGLPDEITVEIKGTSSQVQLAQQLIQEYM 410
+IG GG +I+NI + SGA + +Q + P I+G Q++LA+ LI E +
Sbjct: 367 CGLVIGKGGENIKNINQQSGAHVELQRNPPPNTDPAVRIFTIRGVPQQIELARHLIDEKV 426
Query: 411 NNHKESITSSYGQ 423
SS+GQ
Sbjct: 427 GGTTIGGPSSFGQ 439
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 14/137 (10%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPV-SSPDRIVLISGKEEPEAP 136
V +++P KVG +IG+ GE IK+ E T + I + DGP+ + D+ + I+G +P
Sbjct: 165 VQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPLPTGADKPLRITG--DP-FK 221
Query: 137 VSPAMDAAVRVFKR-----VSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
V A D + + + G+ +D ++ G SV + VP +IG+ G +I
Sbjct: 222 VQQARDLVLEIIREKDQADFRGI-RSDFSSRIGGG---SVEVSVPRFAVGIIIGRNGEMI 277
Query: 192 KSIQENSGASVRVLSAD 208
K IQ ++G ++ D
Sbjct: 278 KKIQNDAGVRIQFKPDD 294
>gi|320583120|gb|EFW97336.1| RNA binding protein, putative [Ogataea parapolymorpha DL-1]
Length = 404
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 170/411 (41%), Gaps = 53/411 (12%)
Query: 22 ETATTESPTTESEAPPTIGSENTEHTTESDSA----LPQSTGPDAAAVPEEKKWPGWPGH 77
E+A + PT + P + T+ +SD +PQ P+ V + P +
Sbjct: 22 ESADQDEPTESNSQPGSPEPSKTDQPADSDQQSQERIPQPEAPEP--VTHHRPTNDDPTY 79
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPV 137
FRM+ + + +I+G+ GE I + E + AR+ V + P+R++ + G P V
Sbjct: 80 VHFRMLCSINETAAIVGKGGETINRIKEMSSARVNVSENLKGIPERVITVRG---PAEYV 136
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
+ A R + V++K +++LL P T +IGK+G+ + I++N
Sbjct: 137 AKAFGLITRAIMDEPFNQASTVESKQ-----INLKLLFPHTIIGYIIGKRGARFREIEDN 191
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKT 257
S A+++ ++D+ +RI+ + G A + H+ + V Q V+ +
Sbjct: 192 SAAALK--ASDQ--ILPASTDRILHITGVADAI---------HIATYYVAQTVIEHKQHL 238
Query: 258 -----YNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRL 312
YN + + + S + A Y P + P ++S Y
Sbjct: 239 AKAVFYNPANCNQPSTPVGGNASRM------AYGNGYPPQVMQVPA-----PIMQSPYMG 287
Query: 313 SGISI-YGQ------DPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSI 365
+ YGQ A++ + + SG +I Q + +P + +IG GG ++
Sbjct: 288 QPVQQPYGQYIPGAAAGAVAAPVPAPMQAQSG--QEKINQDIYVPQMHIGLVIGKGGKNL 345
Query: 366 ENIRRTSGAIITVQESRGLPDEITVEIKGTSS-QVQLAQQLIQEYMNNHKE 415
++IR +G + V + E + + TS +Q A LI + N K+
Sbjct: 346 KDIRTITGCYVKVNDEVPGATERKLTLMSTSPFAIQQAIMLINNKIENEKQ 396
>gi|149236583|ref|XP_001524169.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452545|gb|EDK46801.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 733
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R+I PV + +I+G++G I E RI+V + P+RIV + G E ++ A
Sbjct: 337 RIICPVKEASTIVGKQGSKINHLREKANVRIQVSENIRDVPERIVTVRGTPE---NIARA 393
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
VR L E + + + +++LL+P LIGKQGS + I+ENS A
Sbjct: 394 YGLIVRTI-----LSEPEDEPANINSQQYTLKLLIPHALIGFLIGKQGSKFREIEENSAA 448
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD-QGVL 251
L A E P + D R++ + G V A+ V +L L D Q VL
Sbjct: 449 K---LKAAEQPLPYSTD-RVLSVSG----VGDAIHIAVYYLSLLLNDHQDVL 492
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 15/78 (19%)
Query: 166 AAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTED-----ERI 220
A+F SVR++ P +A ++GKQGS I ++E A+VR+ V+E+ ERI
Sbjct: 331 ASFISVRIICPVKEASTIVGKQGSKINHLREK--ANVRI--------QVSENIRDVPERI 380
Query: 221 VEMQGEAAKVLKALEAVV 238
V ++G + +A +V
Sbjct: 381 VTVRGTPENIARAYGLIV 398
>gi|25144314|ref|NP_740869.1| Protein F26B1.2, isoform a [Caenorhabditis elegans]
gi|373218905|emb|CCD64191.1| Protein F26B1.2, isoform a [Caenorhabditis elegans]
Length = 397
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
G R++V G+IIG+ GE IK+ + A ++V D ++P+R+ ++ E+
Sbjct: 48 GKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPD--SNTPERVCTVTADEK--- 102
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
+ + K V E++ + C VR+LV + A LIG+ GS IK ++
Sbjct: 103 -------TVLNILKDVLPRLEDNFSERDP----CEVRMLVHQSHAGALIGRNGSKIKELR 151
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
E A +++ + AP +R++ GE VL +E V+ L++ + P
Sbjct: 152 EKCSARLKIFTGC-AP---GSTDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYL 206
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T + IP IIG GG I IR+ SGA IT+++S G P+ I + IKGT Q+ AQ
Sbjct: 318 TAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQPERI-ITIKGTEQQIHSAQ 376
Query: 404 QLIQEYMNN 412
L+Q+ + N
Sbjct: 377 YLLQQCVRN 385
>gi|71023653|ref|XP_762056.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
gi|46101621|gb|EAK86854.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
Length = 850
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 12/158 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R ++ IIG+ G+ I + + + AR+ + + +P+RI+ +SG P VS
Sbjct: 549 MRTLIVTSDASIIIGKSGKHINEIRDKSNARLNISEIIPGNPERILTVSG---PLDAVSK 605
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A VR R++ P + A G+ ++R +VP+++ ++IGKQGS IK IQE SG
Sbjct: 606 AFGLIVR---RINDEPFDL--ASVPGSKSVTIRFIVPNSRMGSVIGKQGSKIKEIQEASG 660
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
A L+A EA ER++ + G A V A+ V
Sbjct: 661 AR---LTAGEA-MLPGSTERVLSISGVADAVHIAVYYV 694
>gi|301768705|ref|XP_002919771.1| PREDICTED: RNA-binding protein Nova-1-like isoform 2 [Ailuropoda
melanoleuca]
Length = 493
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G E
Sbjct: 58 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 117
Query: 133 PEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLI 184
V + +R + VS L P+ V+ V+++VP++ A +I
Sbjct: 118 ALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDR----IKQVKIIVPNSTAGLII 173
Query: 185 GKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
GK G+ +K+I E SGA V++ + P + ER+V + GE + KA+E ++ +++
Sbjct: 174 GKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 229
>gi|190344879|gb|EDK36648.2| hypothetical protein PGUG_00746 [Meyerozyma guilliermondii ATCC
6260]
Length = 545
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 19/224 (8%)
Query: 28 SPTTESEAPPTIGSENTEHTTESDSALPQSTGPDAAAVP---EEKKWPGWPGHCVFRMIV 84
+P T S IG+ + T+++ +P + D + P + + P + FRM
Sbjct: 149 NPITNSGVSQAIGTTTSYGTSQAYDPVPFANHLDYTSRPMANHQAERESDPTYVSFRMYC 208
Query: 85 PVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAA 144
PV + +IG++G++I E ARI+V + +RI+ + G P V+ A
Sbjct: 209 PVKEASFVIGKRGDMINHLREKANARIQVSENIKDVQERIISVKG---PAENVAKAFGLI 265
Query: 145 VRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRV 204
R L E + + + + ++++L+P +IGK GS + I+ENS A
Sbjct: 266 TRAI-----LEEPEDEPASIMSRQYNLKVLIPHPMVGYIIGKGGSKFREIEENSAAK--- 317
Query: 205 LSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
L A E P + D R++ + G V A+ + ++ + +++
Sbjct: 318 LKAAEQPLPNSTD-RVLSVLG----VGDAIHIAIYYISQVIIEH 356
>gi|430813652|emb|CCJ29027.1| unnamed protein product [Pneumocystis jirovecii]
Length = 383
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 152/340 (44%), Gaps = 55/340 (16%)
Query: 69 KKWPGWPGHCV-FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLI 127
+++ G+ G V R +V + G IIGR+G+ + + + V + DR++ I
Sbjct: 62 EEYDGYGGSQVTLRALVSTKEAGIIIGRQGKNVAELRGANGIKAGVSKVVPNIHDRVLTI 121
Query: 128 SGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQ 187
SG + VS A A + F + + + A +S S+RLL+ +IG+Q
Sbjct: 122 SGSLDG---VSKAYAAIAQAFID-NPIGHSTNHASSSSEPQSSIRLLISHNMMGTIIGRQ 177
Query: 188 GSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD 247
G IK IQ+ SGA R+++ E ERIVE+QG V+ +++ + + K L+D
Sbjct: 178 GLKIKHIQDLSGA--RMIAFKE--ILPQSTERIVEVQG----VVSSIQTAIWEIGKCLID 229
Query: 248 ---QGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREP 304
+G+ +F YN S+ + +S+ + Q +Y +R+
Sbjct: 230 DWERGIGTVF---YNPSLRLSSTLVPGHQGNSILSGAQPGHYLQY-----------QRQS 275
Query: 305 QLESRYRLSGISIYGQDPALST---IRSSALGRASGPIVTQITQTMQIPISYAEDIIGVG 361
+ RL + + Q+P ++ IR Q + IP IIG G
Sbjct: 276 SQMNYSRLGNMPSHFQEPLDTSNQDIR---------------VQNISIPSDMVGCIIGRG 320
Query: 362 GTSIENIRRTSGAIITVQESRGLPDEITVE----IKGTSS 397
G+ I IRR SG+ I++ ++ P + T E I+GT+S
Sbjct: 321 GSKISEIRRISGSKISIAKA---PHDETGERMFTIQGTAS 357
>gi|86170571|ref|XP_966041.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|46362283|emb|CAG25221.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 755
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 31/185 (16%)
Query: 61 DAAAVPEEK-----KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD 115
D +VP+EK K+ CV R ++ V IIG+ G IK+ T A ++D
Sbjct: 359 DNYSVPKEKNLLLHKYGKEVSPCVVRFVLDVETTAWIIGKAGCHIKEIRSVTGAGAVIVD 418
Query: 116 GP-----VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
P V + DRI+ +SG E + A+++ R E +++
Sbjct: 419 APDNIENVKTCDRILTLSGSAENKF-------NALKLIVRQMEEREKNINN--------P 463
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE-AAK 229
+R+LVP A LIG++GS+IK I E SG+ ++V E +E+E++V + G AK
Sbjct: 464 MRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKE-----SENEKLVLITGSPEAK 518
Query: 230 VLKAL 234
+L ++
Sbjct: 519 ILASV 523
>gi|426230667|ref|XP_004009386.1| PREDICTED: far upstream element-binding protein 2 [Ovis aries]
Length = 484
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 71 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 130
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 131 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 187
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 188 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 229
>gi|395512937|ref|XP_003760689.1| PREDICTED: far upstream element-binding protein 2 [Sarcophilus
harrisii]
Length = 777
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 182 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 241
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P ++G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 242 IV---SRGRGGPPGQFHDNSNGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 298
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 299 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 340
>gi|330917577|ref|XP_003297863.1| hypothetical protein PTT_08419 [Pyrenophora teres f. teres 0-1]
gi|311329164|gb|EFQ93994.1| hypothetical protein PTT_08419 [Pyrenophora teres f. teres 0-1]
Length = 371
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 136/348 (39%), Gaps = 38/348 (10%)
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP 136
R IV + G IIG+ G+ + ++T R V DR++ ++G +
Sbjct: 44 QLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGVHDRVLSVTGSL---SG 100
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+S A A + + G P + +RLL+ Q +IG+QG IK IQ+
Sbjct: 101 ISKAYGLAAKGL--LEGAPAMGMGGVIRTDGTHPIRLLISHNQMGTIIGRQGLKIKQIQD 158
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
SG VR+++ E ERIVE+QG A + KA V + K L+D
Sbjct: 159 ASG--VRMVAQKE--MLPQSTERIVEVQGSPAGIEKA----VWEIGKCLIDDHERGYGTV 210
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGIS 316
YN + +V+ A L + R G
Sbjct: 211 LYNPVV----RVQPGAGPGPLSNGGGAPSGGGSGGGGGMGGRSYNRTGH--------GAD 258
Query: 317 IYGQDPALSTIR-SSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRR 370
PA S S A R P T+ TQ + IP IIG GGT I IR+
Sbjct: 259 FSDSPPAFSRRSGSDAASRPPPPTHTEDGEEMQTQNISIPSDMVGCIIGRGGTKISEIRK 318
Query: 371 TSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
TS A I++ ++ P + T E I G++S + A L+ E + K
Sbjct: 319 TSNARISIAKA---PHDDTGERMFTITGSASANEKALYLLYENLEAEK 363
>gi|426249910|ref|XP_004018689.1| PREDICTED: poly(rC)-binding protein 4 [Ovis aries]
Length = 425
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 145/384 (37%), Gaps = 93/384 (24%)
Query: 95 RKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVS-- 152
R E +K+ E + ARI + +G S P+RI I+G + VF VS
Sbjct: 57 RPQETVKRIREQSSARITISEG--SCPERITTITG-------------STAAVFHAVSMI 101
Query: 153 --GLPENDVDAKASGAAF----CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLS 206
L E+ A A+G ++RL++P++Q +LIGK G+ IK I+E +GA V+V +
Sbjct: 102 AFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV-A 160
Query: 207 ADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQER 266
D P ER V + G ++ + R
Sbjct: 161 GDLLP---NSTERAVTVSGVPDAIILCV-------------------------------R 186
Query: 267 QVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALST 326
Q+ +S AT Y PS ++ L G S+ GQ A++
Sbjct: 187 QICAVILESPPKGAT-----IPYHPSLSLGTVLLSTN---------QGFSVQGQYGAVTP 232
Query: 327 IRSSALGRASG---------------PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRT 371
+ L + SG P +Q +P +IG G+ I IR+
Sbjct: 233 AEVTKLQQLSGHAVPFASPSMVPGLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 292
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKESITSSYGQIDTGYRPS 431
SGA I + E V I G+ + LAQ LI + K + + G T
Sbjct: 293 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPTDLPAP 352
Query: 432 YPQLGNSSYPSSSLSTQPYGGYGS 455
+ S P ++L T P G G+
Sbjct: 353 F------SPPLTALPTAPPGLLGT 370
>gi|56549651|ref|NP_006480.2| RNA-binding protein Nova-1 isoform 2 [Homo sapiens]
gi|119586394|gb|EAW65990.1| neuro-oncological ventral antigen 1, isoform CRA_a [Homo sapiens]
gi|119586396|gb|EAW65992.1| neuro-oncological ventral antigen 1, isoform CRA_a [Homo sapiens]
Length = 483
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 18/182 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 130 KEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAI 181
E V + +R + VS L P+ V+ V+++VP++ A
Sbjct: 105 TVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDR----IKQVKIIVPNSTAG 160
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K++ E SGA V++ + P + ER+V + GE + KA+E ++ +
Sbjct: 161 LIIGKGGATVKAVMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKI 217
Query: 242 RK 243
++
Sbjct: 218 QE 219
>gi|451847129|gb|EMD60437.1| hypothetical protein COCSADRAFT_99089 [Cochliobolus sativus ND90Pr]
Length = 364
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 139/347 (40%), Gaps = 43/347 (12%)
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP 136
R IV + G IIG+ G+ + ++T R V DR++ ++G +
Sbjct: 44 QLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGVHDRVLSVTGSL---SG 100
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+S A A + + G P + +RLL+ Q +IG+QG IK IQ+
Sbjct: 101 ISKAYGLAAKGL--LEGAPAMGMGGVIRTDGTHPIRLLISHNQMGTIIGRQGLKIKQIQD 158
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEK 256
SG VR+++ E ER+VE+QG A + KA V + K L+D
Sbjct: 159 ASG--VRMVAQKE--MLPQSTERVVEVQGSPAGIEKA----VWEIGKCLIDDHERGYGTV 210
Query: 257 TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGIS 316
YN ++ + V + A Y T + F + P R SG
Sbjct: 211 LYNPAVRVQPGVGPGPAANGGSAPAGGMGGRSYN-RTGHGADFSDSPPAFSRR---SG-- 264
Query: 317 IYGQDPALSTIRSSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRRT 371
S A R P T+ TQ + IP IIG GG+ I IR+T
Sbjct: 265 ------------SDAASRPPPPTHTEDGEEMQTQNISIPSDMVGCIIGRGGSKISEIRKT 312
Query: 372 SGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
S A I++ ++ P + T E I G++S + A L+ E + K
Sbjct: 313 SNARISIAKA---PHDDTGERMFTITGSASANEKALYLLYENLEAEK 356
>gi|389748653|gb|EIM89830.1| hypothetical protein STEHIDRAFT_118925 [Stereum hirsutum FP-91666
SS1]
Length = 304
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 143/336 (42%), Gaps = 68/336 (20%)
Query: 92 IIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRV 151
IIG+ G + + E + AR+ V + +P+RI+ +SG P VS A VR R+
Sbjct: 13 IIGKAGSHVNEIREKSGARVMVSESIPGNPERILNVSG---PLDAVSKAFGLIVR---RI 66
Query: 152 SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAP 211
+ P DV + G+ +++ ++P+++ ++IGKQGS IK IQ+ SGA L+A E
Sbjct: 67 NDEP-FDVPS-VPGSRAVTIKFMIPNSRMGSVIGKQGSKIKEIQDASGAR---LNASEG- 120
Query: 212 FYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETW 271
ER++ + G V A+ ++ L++ +QER
Sbjct: 121 MLPGSTERVLSVAG----VADAIHIATYYIGNILIE---------------AQERMPSAG 161
Query: 272 ADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSA 331
SS Y PS R + P + S Y + G S +P + T +
Sbjct: 162 TAMSS------------YRPSNRSTT---RSTPYVGSSY-VPGYS----NPYVQTAPPAP 201
Query: 332 LGRASGPIVTQI-TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQE----SRGL-- 384
QI TQ + IP IIG GG+ I IR S + I + E + G+
Sbjct: 202 GNPP-----PQIQTQQIYIPNDLVGCIIGKGGSKINEIRHMSASQIKIMEPGAGAGGVNP 256
Query: 385 -----PDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
E V I G + +Q+A QL+ + K+
Sbjct: 257 APAPGEGERLVVITGPPANIQMAVQLLYHRLEQEKQ 292
>gi|258566349|ref|XP_002583919.1| hypothetical protein UREG_06886 [Uncinocarpus reesii 1704]
gi|237907620|gb|EEP82021.1| hypothetical protein UREG_06886 [Uncinocarpus reesii 1704]
Length = 366
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 125/317 (39%), Gaps = 64/317 (20%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P+
Sbjct: 50 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG------PLQG 103
Query: 140 AMDAAVRVFKRV-SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A V K + G P+ + VRLL+ Q +IG+QG IK IQ+ S
Sbjct: 104 TAKAYGMVAKSLLEGAPQVGMGGIIQNNGTHPVRLLISHNQMGTIIGRQGLKIKYIQDAS 163
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E ERIVE+QG + +E V + K L+D
Sbjct: 164 G--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAVWEIGKCLIDD---------- 205
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTR-------RESLFLEREPQLESR-Y 310
W + + Y P+ R S FL P R Y
Sbjct: 206 ------------WQRGTG---------TVLYNPAVRANVGGGQMNSSFLGPNPNYGGRSY 244
Query: 311 RLSGISI-YGQDPALSTIR---SSALGRASGPIVTQ-----ITQTMQIPISYAEDIIGVG 361
+G + P+ R S A R P+VT+ TQ + IP IIG G
Sbjct: 245 NRTGNGADFSDQPSSGYNRRHNSDAPNRGI-PLVTEDGEEVQTQNISIPSDMVGCIIGRG 303
Query: 362 GTSIENIRRTSGAIITV 378
G+ I IRR+SGA I++
Sbjct: 304 GSKISEIRRSSGARISI 320
>gi|432895615|ref|XP_004076076.1| PREDICTED: RNA-binding protein Nova-1-like isoform 2 [Oryzias
latipes]
Length = 444
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G E
Sbjct: 4 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 63
Query: 133 PEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLI 184
V + VR + VS L P+ V+ A +L+VP++ A +I
Sbjct: 64 ALNSVHNFIAEKVREMPQSAQKPEPVSILQPQTTVNPDRVKQA----KLIVPNSTAGLII 119
Query: 185 GKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
GK G+ +K++ E SGA V++ + P + ER+V + GE + KA+E +V +++
Sbjct: 120 GKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTISGEPEQNRKAVEIIVQKIQE 175
>gi|281339770|gb|EFB15354.1| hypothetical protein PANDA_017644 [Ailuropoda melanoleuca]
Length = 481
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 127
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 128 IV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 184
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 185 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 226
>gi|189441939|gb|AAI67653.1| LOC100170586 protein [Xenopus (Silurana) tropicalis]
Length = 449
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +++ ++++ P+R+V ++G + +D
Sbjct: 100 VPDGMVGLIIGRGGEQINKIQQESGCKVQISPDSGGMPERVVSLTGSPDSVQKAKMLLDD 159
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V R G P + ++G +++P+ +A +IGK G IK +QE +G +
Sbjct: 160 IV---ARGRGGPPSQFHDNSNGQNGSLQEIMIPAGKAGLIIGKGGETIKQLQERAGVKMI 216
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
++ + + RIV GE KV +A E V+ LR+
Sbjct: 217 LIQDGSQNTNMDKPLRIV---GEPFKVQQACEMVMDLLRE 253
>gi|341894976|gb|EGT50911.1| hypothetical protein CAEBREN_13773 [Caenorhabditis brenneri]
Length = 397
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
G R++V G+IIG+ GE IK+ + A ++V D ++P+R+ ++ E+
Sbjct: 48 GKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTVTADEK--- 102
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
+ + K V E++ + C VR+L+ + A LIG+ GS IK ++
Sbjct: 103 -------TVLNILKDVLPRLEDNFSERDP----CEVRMLIHQSHAGALIGRNGSKIKELR 151
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
E A +++ + AP +R++ GE VL +E V+ L++ + P
Sbjct: 152 EKCSARLKIFTGC-AP---GSTDRVLITSGEQKNVLAIIEEVMRELKEIPIKGSATPYL 206
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T + IP IIG GG I IR+ SGA IT++ S G P+ I + IKGT Q+ AQ
Sbjct: 318 TAQVTIPSDLGGTIIGRGGERIARIRQDSGAQITLEPSNGQPERI-ITIKGTEQQIHSAQ 376
Query: 404 QLIQEYMNN 412
L+Q+ + N
Sbjct: 377 YLLQQCVRN 385
>gi|348668189|gb|EGZ08013.1| hypothetical protein PHYSODRAFT_339892 [Phytophthora sojae]
Length = 644
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 34/179 (18%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSPDRIVLISGKEE 132
G + M VP VG IIGR GE I+ + A I+++ +G +PDR V I+G ++
Sbjct: 188 GQSSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTPDRFVNITGNQD 247
Query: 133 PEAPVSPAMDAAVRVFKRV----------SGLPE-NDVDAKASGAAFC-----SVRLLVP 176
A+D A R+ + + G E +D D A SV LLVP
Sbjct: 248 -------ALDLAQRLIQNLIDERQQNQGAGGFRERDDRDRMARYGGINPDGTDSVELLVP 300
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG-----EAAKV 230
+ + +IG+ G IK+IQ+ +G SV + + P D R++ ++G EAAK
Sbjct: 301 NERVGLIIGRGGCTIKAIQQRTGTSVTIP---QTPDPNHPDMRLITIRGTMEAKEAAKF 356
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAII-TVQESRGLPD--EITVEIKGTSSQ 398
Q + M++P IIG GG +I +++ SGA I V+E G P + V I G
Sbjct: 189 QSSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTPDRFVNITGNQDA 248
Query: 399 VQLAQQLIQEYMNNHKES 416
+ LAQ+LIQ ++ +++
Sbjct: 249 LDLAQRLIQNLIDERQQN 266
>gi|51472291|gb|AAU04539.1| neurological oncogenic ventral antigen protein [Danio rerio]
Length = 473
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G E
Sbjct: 61 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 120
Query: 133 PEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLI 184
V + VR + VS L P+ V+ A +L+VP++ A +I
Sbjct: 121 ALNNVHDFIAEKVREMPQSAQKTEPVSILQPQTTVNPDRVKQA----KLVVPNSTAGLII 176
Query: 185 GKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
GK G+ +K++ E SGA V++ + P + ER+V + GE + KA+E +V +++
Sbjct: 177 GKGGATVKAVMEQSGAWVQL---SQKPDGINLQERVVTISGEPEQNRKAVEIIVQKIQE 232
>gi|344300282|gb|EGW30622.1| hypothetical protein SPAPADRAFT_63451 [Spathaspora passalidarum
NRRL Y-27907]
Length = 374
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 27/245 (11%)
Query: 7 TDNGSINLPEP-DPQPETATTESPTTESEAPPTIGSENTEHTTESDSALPQSTGPD-AAA 64
T+ S N P+P D Q + T E PT+ S SE++E E + ST D +
Sbjct: 8 TNFTSENEPKPVDEQVQPTTDEQPTSVSTESQPSNSESSEQAEEVPVSASSSTNHDQSTT 67
Query: 65 VPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRI 124
+P R++V + G +IG+ G++I ++T + + S +RI
Sbjct: 68 LPSLNDKSNGDAVINVRVLVSAKEAGCLIGQNGKVIDGIRDETNTKAGISRLQPGSHERI 127
Query: 125 VLISGKEEPEAP-----VSPAMDAAVRVF-----KRVSGLP--ENDVDAKASGAAFCSVR 172
+ +SGK + A D+ + + K++S P EN+ +R
Sbjct: 128 LTVSGKLDNCAKALSYFAQALCDSTIETYNYFPLKQLSANPCIENETTI---------LR 178
Query: 173 LLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLK 232
LLVP+ Q LIG +G I+ IQ N S+ F +ER+VE+QG +
Sbjct: 179 LLVPNAQMGTLIGSKGLRIQQIQSNYHISMIA----SKSFLPGSNERLVELQGTVNDLYD 234
Query: 233 ALEAV 237
AL +
Sbjct: 235 ALRII 239
>gi|320580877|gb|EFW95099.1| RNA binding protein [Ogataea parapolymorpha DL-1]
Length = 689
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 33/184 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARI---KVLDGPVSSPDRIVLISG--KEEPE 134
+RM+V + G+IIG+ G+ I + E T + KV++G + DRI+ ++G P
Sbjct: 388 YRMLVSRREAGAIIGKNGDNITRIREQTNVKAGVSKVIEGCI---DRILTVTGIVDNVPR 444
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVD-----------------AKASGAAF----CSVRL 173
A V A + V+ N D A+ F S+RL
Sbjct: 445 ALVQFAKAVTDSNVQTVASASANGTDPTSLITYNFFPLKPLCPTPAASDPFYAETLSLRL 504
Query: 174 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA 233
L+P +Q LIGK GS IKSIQE + V S D + ERIVE+QG +++A
Sbjct: 505 LIPHSQMGTLIGKGGSRIKSIQETYNIKM-VASKD---YLRNSTERIVEVQGAKTNLVEA 560
Query: 234 LEAV 237
L +
Sbjct: 561 LNTI 564
>gi|145238284|ref|XP_001391789.1| RNA-binding protein rnc1 [Aspergillus niger CBS 513.88]
gi|134076273|emb|CAL00757.1| unnamed protein product [Aspergillus niger]
gi|350635790|gb|EHA24151.1| hypothetical protein ASPNIDRAFT_209528 [Aspergillus niger ATCC
1015]
Length = 360
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 131/317 (41%), Gaps = 58/317 (18%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P++
Sbjct: 45 LRAIVSSKEAGIIIGKSGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTG------PLNG 98
Query: 140 AMDAAVRVFK-RVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A V K + G P+ + S VRLL+ Q +IG+QG IK IQ+ S
Sbjct: 99 TARAYALVAKGLLEGAPQMGMGGIVSNNGTHPVRLLISHNQMGTIIGRQGLKIKHIQDAS 158
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E T ERIVE+QG + +E V + K L+D Y
Sbjct: 159 G--VRMVAQKEMLPQST--ERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTGTILY 210
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESR-YRLSGISI 317
N + V ++ + ++ Y SR Y +G
Sbjct: 211 NPA------VRASVGTTTSTSTMNQSVGNGYN-----------------SRPYNRTG--- 244
Query: 318 YGQDPALSTIRSSALGRASG--------PIVTQI-----TQTMQIPISYAEDIIGVGGTS 364
+ A + +S GR S P+VT+ TQ + IP IIG GG+
Sbjct: 245 ---NGADFSDQSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGSK 301
Query: 365 IENIRRTSGAIITVQES 381
I IRR+SGA I++ ++
Sbjct: 302 ITEIRRSSGARISIAKA 318
>gi|351713497|gb|EHB16416.1| Far upstream element-binding protein 2, partial [Heterocephalus
glaber]
Length = 522
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 69 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 128
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR--LLVPSTQAINLIGKQGSLIKSIQENSGAS 201
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G
Sbjct: 129 IV---SRGRGGPPGQFHDSANGGQNGTVQEEIMIPAGKAGLVIGKGGETIKQLQERAGVK 185
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
+ ++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 186 MILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 228
>gi|356535513|ref|XP_003536289.1| PREDICTED: RNA-binding protein Nova-1-like [Glycine max]
Length = 337
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 15/166 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGK-EEPEA 135
R +V GS+IG+ G I + ARI++ P DRI+++SG E +
Sbjct: 38 IRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGAINEIQR 97
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
V + ++ + +ND + K VRL+VP+ +IGK G+ I+S
Sbjct: 98 AVELILS---KLLSELHSEDDNDAEPK------TKVRLVVPNGSCGGIIGKGGATIRSFI 148
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
E+S A +++ D Y +++R+V + G + ++A+E +V L
Sbjct: 149 EDSQAGIKISPQDNN--YYGQNDRLVTLTGSFDEQMRAIELIVSKL 192
>gi|432101996|gb|ELK29816.1| Far upstream element-binding protein 2, partial [Myotis davidii]
Length = 664
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 127
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P ++G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 128 IV---SRGRGGPPGQFHDNSNGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 184
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 185 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 226
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ-ESRGLPDE 387
SS LG P T +T+ ++P IIG GG I I++ SG + + +S GLP E
Sbjct: 48 SSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP-E 106
Query: 388 ITVEIKGTSSQVQLAQQLIQE 408
+V + G VQ A+ ++ +
Sbjct: 107 RSVSLTGAPESVQKAKMMLDD 127
>gi|357437527|ref|XP_003589039.1| Far upstream element-binding protein [Medicago truncatula]
gi|355478087|gb|AES59290.1| Far upstream element-binding protein [Medicago truncatula]
Length = 605
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 34/208 (16%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAPV 137
++ +P +VG IIG+ GE IK + A+I+V +D +SP+R+V ++G +
Sbjct: 115 KIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSD----- 169
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL-----------VPSTQAINLIGK 186
A+ A ++ K V +A++ G + R+ +P+ + +IGK
Sbjct: 170 --AIATAEKLIKEVL------AEAESGGNGLVTRRMTGQGGADEFSMKIPNNKVGLIIGK 221
Query: 187 QGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
G IKS+Q +GA ++V+ P T ER ++++G + ++ A + V L
Sbjct: 222 GGETIKSMQATTGARIQVIPLHLPPG-DTSTERTLKIEGTSEQIESAKQLV----DSILS 276
Query: 247 DQGVL--PLFEKTYNASISQERQVETWA 272
+ L P Y+ Q R +WA
Sbjct: 277 GENRLRNPSMSGGYSQQGYQARPPSSWA 304
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPD----EITVEIKGTSSQVQL 401
+M+IP + IIG GG +I++++ T+GA I V P E T++I+GTS Q++
Sbjct: 207 SMKIPNNKVGLIIGKGGETIKSMQATTGARIQVIPLHLPPGDTSTERTLKIEGTSEQIES 266
Query: 402 AQQLIQEYMNNHKE----SITSSYGQIDTGYRPSYPQLGNSSYPSSSLSTQPYGGYGSSG 457
A+QL+ ++ S++ Y Q RP SS+ + S QP GYG +
Sbjct: 267 AKQLVDSILSGENRLRNPSMSGGYSQQGYQARPP------SSWAPPAASQQP--GYGYAQ 318
Query: 458 VGGY 461
G Y
Sbjct: 319 PGAY 322
>gi|388854780|emb|CCF51673.1| related to PBP2-PAB1 binding protein [Ustilago hordei]
Length = 446
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R ++ IIG+ G+ I + + + AR+ + + +P+RI+ +SG P VS
Sbjct: 142 MRTLIVTSDASIIIGKSGKHINEIRDKSNARLNISEIIPGNPERILTVSG---PLDAVSK 198
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A VR R++ P + G+ ++R +VP+++ ++IGKQGS IK IQE SG
Sbjct: 199 AFGLIVR---RINDEPFDQ--PSVPGSKSVTIRFIVPNSRMGSVIGKQGSKIKEIQEASG 253
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
A L+A EA ER++ + G A V A+
Sbjct: 254 AR---LTAGEA-MLPGSTERVLSISGVADAVHIAV 284
>gi|212542979|ref|XP_002151644.1| KH domain RNA-binding protein [Talaromyces marneffei ATCC 18224]
gi|210066551|gb|EEA20644.1| KH domain RNA-binding protein [Talaromyces marneffei ATCC 18224]
Length = 367
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 126/313 (40%), Gaps = 49/313 (15%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G
Sbjct: 50 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG---------- 99
Query: 140 AMDAAVRVFKRVS-----GLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+ R + V+ G P+ + +RLL+ Q +IG+QG IK I
Sbjct: 100 GLQGCARAYSIVAKGLLEGAPQVGMGGVVQNNGTHPIRLLISHNQMGTIIGRQGLKIKHI 159
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
Q+ SG VR+++ E T ERIVE+QG + +E V + K L+D
Sbjct: 160 QDASG--VRMVAQKEMLPQST--ERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTG 211
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLE-REPQLESRYRLS 313
YN ++ +V H ++ S S R + EP R S
Sbjct: 212 TVLYNPAV----RVSVGGSGQPSHNGDRTGGSYGGGRSYNRTGNGADFSEPSGGYNRRGS 267
Query: 314 GISIYGQDPALSTIRSSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENI 368
G D A +I P+VT TQ + IP IIG GG+ I I
Sbjct: 268 G------DNANRSI----------PMVTDDGEEVQTQNISIPADMVGCIIGRGGSKISEI 311
Query: 369 RRTSGAIITVQES 381
RR+SGA I++ ++
Sbjct: 312 RRSSGARISIAKA 324
>gi|448085571|ref|XP_004195892.1| Piso0_005318 [Millerozyma farinosa CBS 7064]
gi|359377314|emb|CCE85697.1| Piso0_005318 [Millerozyma farinosa CBS 7064]
Length = 492
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
P + FRM PV + +I+G+KGE I + RI V + + P+RI+ + G P
Sbjct: 125 PTYVSFRMYCPVKEASTIVGKKGEKINHIRDKANVRINVSENLKNVPERIISVRG---PA 181
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
V+ A R L E + + + + +++LLVP +IGKQG + I
Sbjct: 182 ENVAKAFGLIARTI-----LEEPEDEPASILSRQYNLKLLVPHPMVGFIIGKQGVKFREI 236
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
+++S A L A E P + D RI+ + G V A+ + ++ + +++
Sbjct: 237 EDSSAAK---LKAAEQPLPYSTD-RILSITG----VGDAIHIAIYYISQVMIEH 282
>gi|344306102|ref|XP_003421728.1| PREDICTED: far upstream element-binding protein 2-like [Loxodonta
africana]
Length = 766
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 121 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 180
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
V R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 181 IV---SRGRGGPPGQFHDSANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 237
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 238 ILIQDGAQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 279
>gi|448081084|ref|XP_004194801.1| Piso0_005318 [Millerozyma farinosa CBS 7064]
gi|359376223|emb|CCE86805.1| Piso0_005318 [Millerozyma farinosa CBS 7064]
Length = 492
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE 134
P + FRM PV + +I+G+KGE I + RI V + + P+RI+ + G P
Sbjct: 125 PTYVSFRMYCPVKEASTIVGKKGEKINHIRDKANVRINVSENLKNVPERIISVRG---PA 181
Query: 135 APVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
V+ A R L E + + + + +++LLVP +IGKQG + I
Sbjct: 182 ENVAKAFGLIARTI-----LEEPEDEPASILSRQYNLKLLVPHPMVGFIIGKQGVKFREI 236
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248
+++S A L A E P + D RI+ + G V A+ + ++ + +++
Sbjct: 237 EDSSAAK---LKAAEQPLPYSTD-RILSITG----VGDAIHIAIYYISQVMIEH 282
>gi|328702094|ref|XP_003241800.1| PREDICTED: hypothetical protein LOC100161431 isoform 2
[Acyrthosiphon pisum]
gi|328702096|ref|XP_001944651.2| PREDICTED: hypothetical protein LOC100161431 isoform 1
[Acyrthosiphon pisum]
Length = 657
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSPDRIVLISGKEEPEAP 136
++++P + G+IIG+ GE I + +T +IK+ D + +R+ +ISG
Sbjct: 198 MKILIPCITAGAIIGKGGETIAQLQTETNTKIKMSKTNDFYPGTTERVCIISGSSSEHI- 256
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS----VRLLVPSTQAINLIGKQGSLIK 192
M A + +R+ P+ + SG A V++L+P++ A +IGK G+ IK
Sbjct: 257 ----MAALTFIMERIREKPDASNRVQNSGDAIADREKQVKILIPNSTAGMIIGKAGAYIK 312
Query: 193 SIQENSGASVRV 204
++E+SG V++
Sbjct: 313 QLKEDSGCFVQI 324
>gi|327289205|ref|XP_003229315.1| PREDICTED: RNA-binding protein Nova-1-like [Anolis carolinensis]
Length = 507
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 24/182 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ L+ G E
Sbjct: 68 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 127
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE-----------NDVDAKASGAAFCSVRLLVPSTQAI 181
V + VR + PE N AK + +++VP++ A
Sbjct: 128 ALNAVHNFIAEKVREIPQSVVKPESVNILQPQTTMNPDRAKQA-------KVIVPNSTAG 180
Query: 182 NLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IGK G+ +K+I E SGA V++ + P + ER+V + GE ++ KA++ +V +
Sbjct: 181 LIIGKGGATVKAIMEQSGAWVQL---SQKPEGINLQERVVTISGEPEQIHKAVDIIVQKI 237
Query: 242 RK 243
++
Sbjct: 238 QE 239
>gi|326378263|gb|ADZ57231.1| neuro-oncological ventral antigen [Branchiostoma floridae]
Length = 511
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 15/173 (8%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEE 132
G + ++++P GSIIG+ G+ I + ++T A IK+ P +RIV+I+G E+
Sbjct: 64 GQLLLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSNDFYPGTTERIVVITGSED 123
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPE----NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
V + +++S P+ + + A+ V+++VP++ A +IGK G
Sbjct: 124 SLKSVHKFL------MEKISQAPQPPAKSPSEQNANNNRAKQVKIVVPNSTAGLIIGKGG 177
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+ IK I E +G+ V++ + +A + ER++ + GE + KA +V +
Sbjct: 178 ATIKFIMEQTGSRVQI--SQKATNGINLPERVITITGEPEQNDKACAFIVNKI 228
>gi|344237643|gb|EGV93746.1| Far upstream element-binding protein 2 [Cricetulus griseus]
Length = 593
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Query: 89 VGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVF 148
VG IIGR GE I K +D+ ++++ P+R V ++G E +D V
Sbjct: 2 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIV--- 58
Query: 149 KRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA 207
R G P A+G +V+ +++P+ +A +IGK G IK +QE +G + ++
Sbjct: 59 SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQD 118
Query: 208 DEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 119 GSQNTNVDKPLRII---GDPYKVQQACEMVMDILRE--RDQG 155
>gi|308486259|ref|XP_003105327.1| hypothetical protein CRE_21277 [Caenorhabditis remanei]
gi|308256835|gb|EFP00788.1| hypothetical protein CRE_21277 [Caenorhabditis remanei]
Length = 441
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 6/166 (3%)
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEP 133
H ++++P VG+IIG+ GE ++ D R+++ + P +RI L+ G+
Sbjct: 42 HLSIKILIPSSAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLVKGRLNN 101
Query: 134 EAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKS 193
V ++ +R ++ + ND + + +++++P+T A +IGK G+ IK
Sbjct: 102 IMAVIESIQDKIR--EKCADQAGNDAFDHKNTSRGNEIKIVMPNTSAGMVIGKSGANIKD 159
Query: 194 IQENSGASVRVLSADEAPFYVTEDERIVEM-QGEAAKVLKALEAVV 238
I+E G ++V + T ER+V + E+A +L+A V+
Sbjct: 160 IREQFGCQIQVYPKAGSVEAKTSLERVVTVAHEESAALLQAASRVL 205
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G S+++L+PS+ +IGK G +++++ ++ + RV + + Y ERI ++
Sbjct: 39 GGDHLSIKILIPSSAVGAIIGKGGEAMRNLKNDN--NCRVQMSKNSETYPGTSERICLVK 96
Query: 225 GEAAKVLKALEAVVGHLRKFLVDQGVLPLFE 255
G ++ +E++ +R+ DQ F+
Sbjct: 97 GRLNNIMAVIESIQDKIREKCADQAGNDAFD 127
>gi|328712758|ref|XP_003244898.1| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 436
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 168/385 (43%), Gaps = 65/385 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VG++IG +GE +K + AR+ + +G S+P+RIV+ISG +
Sbjct: 30 IRILLNSREVGNVIGIRGETVKNIRSQSGARVLISNG--STPERIVIISGNTIAICRATE 87
Query: 140 AMDAAVRVF-KRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
+ V F +R++G N + K +++L+VP++Q +IGK GS I+ I+++S
Sbjct: 88 LIGLKVEEFSERLNG---NWIGPKTP----LTLKLIVPASQCGFIIGKNGSKIREIRDSS 140
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
A++ ++ ++ P ER+V + G + + V L+D
Sbjct: 141 RAAI-LVGSNMLP---NSTERLVSITGTTGTISHCVYLVC----NVLLD----------- 181
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRL-SGISI 317
S E+ A H + ++ + T + L E L + L SG +
Sbjct: 182 ----SPPPNCESIA----YHPCKEISV---FETCTVIKDLGTEHNIPLTNLAALGSGTAT 230
Query: 318 YGQ-DPALSTIRSSALGRASGPIVTQI--------------TQTMQIPISYAEDIIGVGG 362
G +PA T + + RAS + + T T+ +P IIG G
Sbjct: 231 NGGINPAALTALAGSQLRASNRLNNNVSGQQYDKNSNSDIDTTTISVPDDLIGCIIGRRG 290
Query: 363 TSIENIRRTSGAIITVQESRGLPD-----EITVEIKGTSSQVQLAQQLIQEYMNNHKESI 417
+ I IR+ SGA + + S+G + + + I G V +A+ LI+ + K ++
Sbjct: 291 SKIAKIRQISGATVHIFRSQGTIENREKVDRRITITGNKESVSVAKYLIEMSVELQKANL 350
Query: 418 TSSYGQIDTGYRPSYPQLGNSSYPS 442
G+++ P + SS P+
Sbjct: 351 ----GEVNLSTLPDNGSITTSSTPT 371
>gi|427792957|gb|JAA61930.1| Putative pasilla, partial [Rhipicephalus pulchellus]
Length = 538
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
F+++VP + G+IIG+ GE I ++ AR+K+ P +R+ LI+G E
Sbjct: 40 FKILVPAVAAGAIIGKGGETIALLQKEAGARVKMSKSNDFYPGTTERVCLITGSVEGVLR 99
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+ + ++ + D D K V++LVP++ A +IGK GS IK I+E
Sbjct: 100 IHEFIMEKIKEKPDPTAKIAIDFDHKQPAEREKQVKILVPNSTAGMIIGKGGSYIKQIKE 159
Query: 197 NSGASVRV--LSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
SGA V++ S D A ER + + GE KA + ++ +
Sbjct: 160 ESGAYVQISQKSKDHA-----LAERCITVIGEMDNNKKACQLILAKI 201
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 162 KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ASG ++LVP+ A +IGK G I +Q+ +GA V++ +++ FY ER+
Sbjct: 31 RASGNGTFHFKILVPAVAAGAIIGKGGETIALLQKEAGARVKMSKSND--FYPGTTERVC 88
Query: 222 EMQGEAAKVLKALEAVVGHLRK 243
+ G VL+ E ++ +++
Sbjct: 89 LITGSVEGVLRIHEFIMEKIKE 110
>gi|392595587|gb|EIW84910.1| hypothetical protein CONPUDRAFT_117160 [Coniophora puteana
RWD-64-598 SS2]
Length = 378
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 23/206 (11%)
Query: 23 TATTESPTTESEAPPTIGSENTEHTTESDSALPQ-STGPDAAAVPEEKKWPGWPGHCVFR 81
A+T SP S A GS++ + + SA P ST P+A A R
Sbjct: 12 NASTPSPNPASSARKEDGSDDAVRSLATTSAAPSASTNPNAPA----------SAMIHMR 61
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAM 141
++ IIG+ G + + E + AR+ V + +P+RI+ +SG P VS A
Sbjct: 62 CLIVTQDASIIIGKGGTHVNEIREKSGARVVVSESIPGNPERILNVSG---PLDAVSKAF 118
Query: 142 DAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
VR R++ P DV + G+ +++ ++P+++ ++IGKQGS IK IQ+ SGA
Sbjct: 119 GLIVR---RINDEPF-DVPS-VPGSRAVTIKFMIPNSRMGSVIGKQGSKIKEIQDASGAR 173
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEA 227
L+A E ER++ + G A
Sbjct: 174 ---LNASEG-MLPGSTERVLSVAGVA 195
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 142 DAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
D AVR S P + A +A +R L+ + A +IGK G+ + I+E SGA
Sbjct: 31 DDAVRSLATTSAAPSASTNPNAPASAMIHMRCLIVTQDASIIIGKGGTHVNEIREKSGA- 89
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
RV+ ++ P ERI+ + G V KA +V
Sbjct: 90 -RVVVSESIP---GNPERILNVSGPLDAVSKAFGLIV 122
>gi|115442854|ref|XP_001218234.1| hypothetical protein ATEG_09612 [Aspergillus terreus NIH2624]
gi|114188103|gb|EAU29803.1| hypothetical protein ATEG_09612 [Aspergillus terreus NIH2624]
Length = 355
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 142/348 (40%), Gaps = 58/348 (16%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G P+
Sbjct: 44 LRAIVSSKEAGIIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTG------PLHG 97
Query: 140 AMDAAVRVFK-RVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENS 198
A V K + G P+ + S VRLL+ Q +IG+QG IK IQ+ S
Sbjct: 98 TARAYALVAKGLLEGAPQMGMGGIVSNNGTHPVRLLISHNQMGTIIGRQGLKIKHIQDAS 157
Query: 199 GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
G VR+++ E ERIVE+QG + +E V + K L+D Y
Sbjct: 158 G--VRMVAQKE--MLPQSTERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTGTILY 209
Query: 259 NASISQERQVETWADKSSLHAATQSAISTEY--TPSTRRESLFLEREPQLESRYRLSGIS 316
N ++ S +T + + Y P R +G
Sbjct: 210 NPAVR----------ASVGSGSTNTNMGNGYGSRPYNRTG----------------NGAD 243
Query: 317 IYGQDPALSTIRS-SALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTSIENIRR 370
Q S+ RS S GR P+V + TQ + IP IIG G+ I IRR
Sbjct: 244 FSDQSGGYSSRRSNSDAGRF--PMVAEDGDEIQTQNISIPADMVGCIIGRAGSKITEIRR 301
Query: 371 TSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
+SGA I++ ++ P + T E I G+++ + A L+ E + K
Sbjct: 302 SSGARISIAKA---PHDETGERMFTIMGSAAANEKALYLLYENLEAEK 346
>gi|410924031|ref|XP_003975485.1| PREDICTED: uncharacterized protein LOC101068273 [Takifugu rubripes]
Length = 652
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ PDR V ++G E ++
Sbjct: 98 VPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTGLPE-------SIQT 150
Query: 144 AVRVFKRV--SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
A R+ + G P + G +++P+++A +IGK G IKS+QE +G
Sbjct: 151 AKRLLTEIVEKGRPAPAFNPN-DGPGMTVQEIMIPASKAGLVIGKGGETIKSLQERAG-- 207
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGV 250
V+++ + P D + + + GE KV +A E V+ +R DQG
Sbjct: 208 VKMVMIQDGPQNTGAD-KPLRISGEPFKVQQAKEMVMDLIR----DQGF 251
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 51/131 (38%), Gaps = 13/131 (9%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG +IGR GE+IKK DT RI+ S+PDRI I G P A D
Sbjct: 271 VPRFAVGIVIGRNGEMIKKIQNDTGVRIQFKPDDGSTPDRIAQIMG---PPNQAQHAADI 327
Query: 144 AVRVFKRVSGLPENDVDAKASG----------AAFCSVRLLVPSTQAINLIGKQGSLIKS 193
+ + V VP+ + +IGK G IK
Sbjct: 328 ITDLLRSVQAGGPPGGGRGRGRGQGNWNMGPPGGLQEFTFTVPTVKTGLIIGKGGETIKG 387
Query: 194 IQENSGASVRV 204
I + SGA + +
Sbjct: 388 ISQQSGARIEL 398
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG V +++P K G +IG+ GE IK E RA +K++ DGP ++ D+ + ISG
Sbjct: 174 PGMTVQEIMIPASKAGLVIGKGGETIKSLQE--RAGVKMVMIQDGPQNTGADKPLRISG- 230
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
EP V A + + + R G E + S S+ + VP +IG+ G +
Sbjct: 231 -EPFK-VQQAKEMVMDLI-RDQGFREQRGEY-GSRVGGDSLDVPVPRFAVGIVIGRNGEM 286
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
IK IQ ++G ++ D + +RI ++ G + A + + LR
Sbjct: 287 IKKIQNDTGVRIQFKPDDG-----STPDRIAQIMGPPNQAQHAADIITDLLR 333
>gi|350529341|ref|NP_001123831.2| KH-type splicing regulatory protein [Xenopus (Silurana) tropicalis]
Length = 675
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +++ ++++ P+R+V ++G + +D
Sbjct: 100 VPDGMVGLIIGRGGEQINKIQQESGCKVQISPDSGGMPERVVSLTGSPDSVQKAKMLLDD 159
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V R G P + ++G +++P+ +A +IGK G IK +QE +G +
Sbjct: 160 IV---ARGRGGPPSQFHDNSNGQNGSLQEIMIPAGKAGLIIGKGGETIKQLQERAGVKMI 216
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
++ + + RIV GE KV +A E V+ LR+
Sbjct: 217 LIQDGSQNTNMDKPLRIV---GEPFKVQQACEMVMDLLRE 253
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG 129
VP VG +IGR G++IKK D RI+ + PD+I I G
Sbjct: 281 VPRHSVGVVIGRNGDMIKKIQNDAGVRIQFKQDDGTGPDKIAHIMG 326
>gi|367050644|ref|XP_003655701.1| hypothetical protein THITE_2119679 [Thielavia terrestris NRRL 8126]
gi|347002965|gb|AEO69365.1| hypothetical protein THITE_2119679 [Thielavia terrestris NRRL 8126]
Length = 374
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 143/360 (39%), Gaps = 33/360 (9%)
Query: 59 GPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV 118
GPD P+ + R IV + G IIG+ G+ + E+T + V
Sbjct: 32 GPDGEPAPKTDQEYAQT-QLTLRAIVSSKEAGVIIGKGGKNVADLREETGVKAGVSKVVQ 90
Query: 119 SSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPST 178
DR++ I+G E +S A A R + G P + ++LL+
Sbjct: 91 GVYDRVLTITGGCEA---ISRAYAAVARSL--LEGAPTMGMGGVIQNNGTHPIKLLISHN 145
Query: 179 QAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
Q +IG+QG IK IQ+ SG VR+++ E ERIVE+QG + +A+ +
Sbjct: 146 QMGTIIGRQGLKIKHIQDVSG--VRMVAQKE--MLPQSTERIVEVQGTPEGIQRAVWEIC 201
Query: 239 GHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESL 298
K LVD YN + + S + ++ T +
Sbjct: 202 ----KCLVDDWQRGTGTVLYNPVVRTQGVGAPGISGGSGYVQDRAPYGGSRVTRTGNGAD 257
Query: 299 FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
F P+ +R S DP + R +G + TQ + IP II
Sbjct: 258 FSNGGPRSYNRRSDS-------DP---SNRGPPTHDENGEEIQ--TQNISIPADMVGCII 305
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHK 414
G G+ I IR+TSGA I++ ++ P + T E I GTS + A L+ E + K
Sbjct: 306 GRAGSKISEIRKTSGARISIAKA---PHDETGERMFTIMGTSKANETALFLLYENLEAEK 362
>gi|403417714|emb|CCM04414.1| predicted protein [Fibroporia radiculosa]
Length = 420
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 170/425 (40%), Gaps = 86/425 (20%)
Query: 10 GSINLPEPDPQPETATTESPTTESEAPPTIGSENTEHTTESDSA---LPQSTGPDAAAVP 66
G +N+ E P +A + +T S + P+ + + + +S A L + + +AA
Sbjct: 51 GDVNMSE---APASADDTAASTPSHSQPSDKAASADMADQSGDAHVKLEEGSATTSAAPS 107
Query: 67 EEKKWPGWPGHCV-FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIV 125
P + R ++ IIG+ G + + E + AR+ V + +P+RI+
Sbjct: 108 TSSATGAAPAANIHMRCLIVTQDASIIIGKGGSHVNEIREKSSARVMVSESIPGNPERIL 167
Query: 126 LISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIG 185
+SG P VS A VR R++ P + S A +++ ++P+++ ++IG
Sbjct: 168 NVSG---PLDAVSKAFGLIVR---RINDEPFDKPSVPGSRA--VTIKFMIPNSRMGSVIG 219
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
K G+ IK IQ+ SGA L+A E ER++ + G A + H+ +
Sbjct: 220 KGGAKIKEIQDASGAR---LNASEG-MLPGSTERVLSVSGVADAI---------HIATYY 266
Query: 246 VDQGVLPLFEK--TYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLERE 303
+ ++ E+ +YN S+ Y PS+ R
Sbjct: 267 IGNILIEANERLPSYNN-------------------------SSYYRPSSNS-----RRP 296
Query: 304 PQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGT 363
P S Y + G S ++ G + GP TQ + IP IIG GG+
Sbjct: 297 PPNGSSY-VPGYS------------NTYPGSSHGPPQQLQTQQIYIPNDLVGCIIGKGGS 343
Query: 364 SIENIRRTSGAIITVQE-------SRGLP------DEITVEIKGTSSQVQLAQQLIQEYM 410
I IR S + I + E G P E V I G + +Q+A QL+ +
Sbjct: 344 KINEIRHMSASNIKIMEPGAVGVGMNGAPAPAGGEGERLVVITGQPANIQMAVQLLYHRL 403
Query: 411 NNHKE 415
K+
Sbjct: 404 EQEKQ 408
>gi|147902659|ref|NP_001083916.1| RNA-binding protein VgRBP71 [Xenopus laevis]
gi|25992561|gb|AAN77160.1| RNA-binding protein VgRBP71 [Xenopus laevis]
gi|213625145|gb|AAI69923.1| RNA-binding protein VgRBP71 [Xenopus laevis]
Length = 672
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +++ ++++ P+RIV ++G P+A V A
Sbjct: 100 VPDGMVGLIIGRGGEQINKIQQESGCKVQISPDSGGMPERIVSLTGN--PDA-VQKAKML 156
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ R G P + ++G +++P+ +A +IGK G IK +QE +G +
Sbjct: 157 LDDIVLRGRGGPPSQFHDSSNGQNGSLQEIMIPAGKAGLIIGKGGETIKQLQERAGVKMI 216
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
++ + + RIV GE KV +A E V+ L++
Sbjct: 217 LIQDGSQNTNMDKPLRIV---GEPFKVQQACEMVMDLLKE 253
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG 129
VP VG +IGR G++IKK D RI+ + PD+I I G
Sbjct: 283 VPRHSVGVVIGRSGDMIKKIQNDAGVRIQFKQDDGTGPDKIAHIMG 328
>gi|291221774|ref|XP_002730893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Saccoglossus kowalevskii]
Length = 437
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 17/164 (10%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ G+IIG+ G I + A + V D S P+RI+ ++ +E +S
Sbjct: 50 LRILLQSKNAGAIIGKGGNNIHRLRTQYNATVTVPD--CSGPERILTVTTNQE--TALSC 105
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
+D + V + + D D C +R+LV +QA +IG+ G IK ++E +G
Sbjct: 106 LLDV-IPVLEEYQQYKDLDFD--------CEMRMLVHQSQAGAIIGRAGFKIKELREQTG 156
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
A+++V S + P ER+V+M G V+ + ++ L +
Sbjct: 157 ANIKVYS-EVCP---NSTERVVQMNGSPEVVINCMRMILDVLNQ 196
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQ 400
TQ+T IP A IIG GG+ I IR SGA+I + E ++ + IKGT Q+Q
Sbjct: 357 TQVT----IPKDLAGSIIGKGGSRIGQIREDSGALIKIDEPLPGSNDRIITIKGTPEQIQ 412
Query: 401 LAQQLIQEYMNNHKESITSSYGQ 423
AQ L+Q + + S+GQ
Sbjct: 413 NAQYLLQNRVRASQSYQQQSFGQ 435
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 47 TTESDSALPQSTGPDAAAVPEE-KKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCE 105
TT ++AL S D V EE +++ C RM+V + G+IIGR G IK+ E
Sbjct: 96 TTNQETAL--SCLLDVIPVLEEYQQYKDLDFDCEMRMLVHQSQAGAIIGRAGFKIKELRE 153
Query: 106 DTRARIKVLDGPV-SSPDRIVLISGKEE 132
T A IKV +S +R+V ++G E
Sbjct: 154 QTGANIKVYSEVCPNSTERVVQMNGSPE 181
>gi|339242773|ref|XP_003377312.1| poly(rC)-binding protein 3 [Trichinella spiralis]
gi|316973900|gb|EFV57443.1| poly(rC)-binding protein 3 [Trichinella spiralis]
Length = 410
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 41/214 (19%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ +VGSIIG+ + A+I + DG + P+RIV I+G +
Sbjct: 42 IRLLMQGKEVGSIIGK-----------SMAKINISDG--TCPERIVTITGSVQ------- 81
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAF--CSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
A+D A FK + E D + RL+VP+TQ LIG+ GS IK I+E
Sbjct: 82 AIDTA---FKMICKKFEEDQQQIPDSVPKPPITFRLIVPATQCGCLIGRGGSKIKDIREA 138
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKT 257
+GAS++V S ER V + G A +++ + +Q L L E
Sbjct: 139 TGASIQVASE----MLPNSTERAVTLSGTAEAIIQCM------------NQICLILLESP 182
Query: 258 YNASISQERQVETWADKSSLHAATQSAISTEYTP 291
+I R + + S +A+ + IS P
Sbjct: 183 PKGAIVPYRPIPSIPFLCSNNASVANTISKSIPP 216
>gi|197127216|gb|ACH43714.1| putative neuro-oncological ventral antigen 1-like protein
[Taeniopygia guttata]
Length = 220
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 93/186 (50%), Gaps = 26/186 (13%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 45 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 104
Query: 130 KEEPEAPVSPAMDAAVRVF--KRVSGLPENDVDAK----------ASGAAFCSVRLLVPS 177
E A++A V F +++ +P+N + + V+++VP+
Sbjct: 105 TVE-------ALNA-VHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPN 156
Query: 178 TQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+ A +IGK G+ +K+I E SGA V++ + P + ER+V + GE + KA+E +
Sbjct: 157 STAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELI 213
Query: 238 VGHLRK 243
+ +++
Sbjct: 214 IQKIQE 219
>gi|147898765|ref|NP_001090218.1| far upstream element (FUSE) binding protein 1 [Xenopus laevis]
gi|47718038|gb|AAH70981.1| MGC78835 protein [Xenopus laevis]
gi|213626654|gb|AAI69815.1| Hypothetical protein MGC78835 [Xenopus laevis]
Length = 653
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 13/179 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ PDR +++G + +D
Sbjct: 95 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPDRSCMLTGSPDSVQEAKMLLDQ 154
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G G+ +++P+++A +IGK G IK +QE +G V+
Sbjct: 155 IVEKGRPTPGF------HHGEGSGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 206
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASI 262
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 207 MVMIQDGPQNTGAD-KPLRIAGDPYKVQQAKEMVL----ELICDQGGFREVRNEYGSRI 260
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IGR GE+IKK D RI+ S+P+R+ I+G ++ + ++
Sbjct: 270 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGSTPERVAQITGPQDRCQHAAEIVND 329
Query: 144 AVRVFKRVSGLPENDVDAKASG----------AAFCSVRLLVPSTQAINLIGKQGSLIKS 193
+R + + +VPS + +IGK G IK+
Sbjct: 330 LLRSVQSGNAGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFVVPSVKTGLIIGKGGETIKN 389
Query: 194 IQENSGASVRV 204
I + SGA + +
Sbjct: 390 ISQQSGARIEL 400
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 18/173 (10%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGKE 131
G+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 172 GNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRIAG-- 227
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGS 189
+P V A + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 228 DPYK-VQQAKEMVLELICDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNGE 284
Query: 190 LIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D + ER+ ++ G + A E V LR
Sbjct: 285 MIKKIQNDAGVRIQFKPDDG-----STPERVAQITGPQDRCQHAAEIVNDLLR 332
>gi|89272465|emb|CAJ82621.1| fubp1 [Xenopus (Silurana) tropicalis]
Length = 653
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 17/181 (9%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ PDR +++G + ++ A
Sbjct: 95 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPDRSCMLTGSPD-------SVQA 147
Query: 144 AVRVFKRV--SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
A R+ ++ G P G+ +++P+++A +IGK G IK +QE +G
Sbjct: 148 AKRLLDQIVEKGRPTPGFH-HGEGSGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG-- 204
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNAS 261
V+++ + P D + + + G+ KV +A E V+ +R DQG Y +
Sbjct: 205 VKMVMIQDGPQNTGAD-KPLRIAGDPYKVQQAKEMVLELIR----DQGGFREIRNEYGSR 259
Query: 262 I 262
I
Sbjct: 260 I 260
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 18/173 (10%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGKE 131
G+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 172 GNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRIAG-- 227
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGS 189
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 228 DPYK-VQQAKEMVLELIRDQGGFREIRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNGE 284
Query: 190 LIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D + ERI ++ G + A E + LR
Sbjct: 285 MIKKIQNDAGVRIQFKPDDG-----STPERIAQITGPQHRCQHAAEIINDLLR 332
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IGR GE+IKK D RI+ S+P+RI I+G + + ++
Sbjct: 270 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGSTPERIAQITGPQHRCQHAAEIIND 329
Query: 144 AVRVFKRVSGLPENDVDAKASG----------AAFCSVRLLVPSTQAINLIGKQGSLIKS 193
+R + + +VP+ + +IGK G IK+
Sbjct: 330 LLRSVQSGNAGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFVVPTVKTGLIIGKGGETIKN 389
Query: 194 IQENSGASVRV 204
I + SGA + +
Sbjct: 390 ISQQSGARIEL 400
>gi|326378247|gb|ADZ57223.1| neuro-oncological ventral antigen [Branchiostoma lanceolatum]
Length = 508
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSPDRIVLISGKEE 132
G + ++++P GSIIG+ G+ I + ++T A IK+ D + +RIV+I+G E+
Sbjct: 64 GQLLLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSNDFYPGTTERIVVITGSED 123
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
V + + R ++ +A + A V+++VP++ A +IGK G+ IK
Sbjct: 124 SLKSVHKFLMEKIGQAPRPPAKSPSEQNANNNRAK--QVKIVVPNSTAGLIIGKGGATIK 181
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
I E +G+ V++ + +A + ER++ + GE + KA +V +
Sbjct: 182 FIMEQTGSRVQI--SQKATSGINLPERVITITGEPEQNDKACAFIVNKI 228
>gi|293331673|ref|NP_001170496.1| uncharacterized protein LOC100384498 [Zea mays]
gi|238005660|gb|ACR33865.1| unknown [Zea mays]
Length = 239
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 32/255 (12%)
Query: 169 CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAA 228
++RLLVP+ LIG+ GS++ +++ + A++ ++S + P + + +VE+ GEA
Sbjct: 1 MNLRLLVPNKVIGCLIGRGGSIVNDMRKKTKANI-LISKGDKPRRASSSDELVEVSGEAD 59
Query: 229 KVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKS---------SLHA 279
K+ AL ++ LR+ ++ + V ++ N+ ++ Q+ A S +L
Sbjct: 60 KLRDALVQIILRLREAVLKESV-----ESQNS--DRDGQLTVAASDSLYGSSLPLPALLP 112
Query: 280 ATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISI----YGQDPALSTIRSSALGRA 335
Q Y E LE P+ S Y S + + YG P+ ++ +A
Sbjct: 113 HNQQIAPLGYDRRGEPER-ALEVFPRTSS-YGYSSMQVTDDGYGGLPSYAS-------KA 163
Query: 336 SGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGT 395
V ++ T +P S ++G GT+++NIR+ SGA I + E + E I GT
Sbjct: 164 YEEHVPRLEMT--VPASGISKVMGKHGTNLDNIRKISGAHIEIIEPKSSRHEHIAYISGT 221
Query: 396 SSQVQLAQQLIQEYM 410
S Q A+ LI+ ++
Sbjct: 222 SEQRHSAENLIKAFI 236
>gi|194374941|dbj|BAG62585.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 107 VPNGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESAQKAKMMLDD 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
+ R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 167 ---IVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 223
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 224 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRER--DQG 265
>gi|410914634|ref|XP_003970792.1| PREDICTED: RNA-binding protein Nova-1-like [Takifugu rubripes]
Length = 501
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 18/195 (9%)
Query: 60 PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS 119
P+ A ++ G G ++++P GSIIG+ G+ I + ++T A IK+
Sbjct: 45 PEEEAGCTKRTNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF 104
Query: 120 SP---DRIVLISGKEEPEAPVSPAMDAAVRVFKR-------VSGL-PENDVDAKASGAAF 168
P +R+ LI G E V + VR + VS L P+ V+ A
Sbjct: 105 YPGTTERVCLIQGTVEALNGVHNFIAEKVREMPQSAQKPEPVSILQPQTTVNPDRVKQA- 163
Query: 169 CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAA 228
+++VP++ A +IGK G+ +K++ E SGA V++ + P + ER+V + GE
Sbjct: 164 ---KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTISGEPE 217
Query: 229 KVLKALEAVVGHLRK 243
+ KA+E +V +++
Sbjct: 218 QNRKAVEIIVQKIQE 232
>gi|348521966|ref|XP_003448497.1| PREDICTED: far upstream element-binding protein 1 [Oreochromis
niloticus]
Length = 631
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ PDR V ++G E +
Sbjct: 94 VPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTGLPESIQTAKRLLTE 153
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + ND G ++VP+++A +IGK G IKS+QE +G V+
Sbjct: 154 IVEKGRPAPAFHHND------GPGMTVQEIMVPASKAGLVIGKGGETIKSLQERAG--VK 205
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGV 250
++ + P D + + + GE KV +A E V+ +R DQG
Sbjct: 206 MVMIQDGPQNTGAD-KPLRISGEPFKVQQAKEMVMELIR----DQGF 247
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG V ++VP K G +IG+ GE IK E RA +K++ DGP ++ D+ + ISG
Sbjct: 170 PGMTVQEIMVPASKAGLVIGKGGETIKSLQE--RAGVKMVMIQDGPQNTGADKPLRISG- 226
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSL 190
EP V A + + + R G E + S S+ + VP +IG+ G +
Sbjct: 227 -EPFK-VQQAKEMVMELI-RDQGFREQRGEY-GSRIGGDSLDVPVPRFAVGIVIGRNGEM 282
Query: 191 IKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 283 IKKIQNDTGVRIQFKPDDG-----TTPDRIAQIMGPPDQAQHAAEIISDLLR 329
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 9/130 (6%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG +IGR GE+IKK DT RI+ ++PDRI I G + + +
Sbjct: 267 VPRFAVGIVIGRNGEMIKKIQNDTGVRIQFKPDDGTTPDRIAQIMGPPDQAQHAAEIISD 326
Query: 144 AVRVFKRVSGLPENDVDAKASG---------AAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
+R + + G VP+ + +IGK G IK I
Sbjct: 327 LLRSVQAGGPPGHGGGRGRGRGQGNWNMGPPGGLQEFTFTVPTMKTGLIIGKGGETIKGI 386
Query: 195 QENSGASVRV 204
+ SGA + +
Sbjct: 387 SQQSGARIEL 396
>gi|45361433|ref|NP_989293.1| far upstream element (FUSE) binding protein 1 [Xenopus (Silurana)
tropicalis]
gi|39794540|gb|AAH63902.1| far upstream element (FUSE) binding protein 1 [Xenopus (Silurana)
tropicalis]
Length = 653
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 17/181 (9%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ PDR +++G + ++ A
Sbjct: 95 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPDRSCMLTGSPD-------SVQA 147
Query: 144 AVRVFKRV--SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
A R+ ++ G P G+ +++P+++A +IGK G IK +QE +G
Sbjct: 148 AKRLLDQIVEKGRPTPGFH-HGEGSGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG-- 204
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNAS 261
V+++ + P D + + + G+ KV +A E V+ +R DQG Y +
Sbjct: 205 VKMVMIQDGPQNTGAD-KPLRIAGDPYKVQQAKEMVLELIR----DQGGFREIRNEYGSR 259
Query: 262 I 262
I
Sbjct: 260 I 260
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 18/173 (10%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGKE 131
G+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 172 GNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRIAG-- 227
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGS 189
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 228 DPYK-VQQAKEMVLELIRDQGGFREIRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNGE 284
Query: 190 LIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D + ERI ++ G + A E + LR
Sbjct: 285 MIKKIQNDAGVRIQFKPDDG-----STPERIAQITGPQDRCQHAAEIINDLLR 332
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IGR GE+IKK D RI+ S+P+RI I+G ++ + ++
Sbjct: 270 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGSTPERIAQITGPQDRCQHAAEIIND 329
Query: 144 AVRVFKRVSGLPENDVDAKASG----------AAFCSVRLLVPSTQAINLIGKQGSLIKS 193
+R + + +VP+ + +IGK G IK+
Sbjct: 330 LLRSVQSGNAGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFVVPTVKTGLIIGKGGETIKN 389
Query: 194 IQENSGASVRV 204
I + SGA + +
Sbjct: 390 ISQQSGARIEL 400
>gi|348519757|ref|XP_003447396.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 1 [Oreochromis niloticus]
Length = 611
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 60 PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS 119
P A+A+P + P V + +P VG++IG+KG+ IK+ A IK+ P
Sbjct: 421 PPASAIPHQHSQQA-PEQEVVYLFIPTQAVGALIGKKGQHIKQLAHFAGASIKI--APAE 477
Query: 120 SPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVP 176
SPD R+V+I+G PEA A R+F ++ EN AK + VP
Sbjct: 478 SPDVTERMVIITGT--PEA----QFKAQGRIFGKLK--EENFFSAKEE--VKLETHIKVP 527
Query: 177 STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE 226
S+ A +IGK G + +Q + A V ++ D+ P DE V++ G
Sbjct: 528 SSAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENDEVFVKISGH 574
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD----GPVSSPDRIVLISGKEEPEA 135
RM+VP VG+IIG++G IK + T++++ + G P I+ PE
Sbjct: 201 LRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDIHRKENAGAAEKP-----ITIHSTPE- 254
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
AA R+ + N+ +++L ++ LIGK+G +K I+
Sbjct: 255 ----GCSAACRMILDIMQKEANETKTTED----IPLKILAHNSLVGRLIGKEGRNLKKIE 306
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
E++G + + S + Y ER + ++G KA + LR+
Sbjct: 307 EDTGTKITISSLQDLTIY--NPERTITVKGSIDACCKAEVEITKKLRE 352
>gi|391326103|ref|XP_003737564.1| PREDICTED: RNA-binding protein Nova-1-like [Metaseiulus
occidentalis]
Length = 430
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 10/167 (5%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
F+++VP + G+IIG+ GE I + +D AR+K+ P +R+ LI+G E
Sbjct: 27 FKILVPAVAAGAIIGKGGETIAQVQKDCGARVKMSKSNDFYPGTTERVCLITGTVEGIVK 86
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+ + ++ + D D K V++LVP++ A +IGK GS IK I+E
Sbjct: 87 IHNFIMDKIKEKPDPNSRTGVDFDHKQPAEREKQVKILVPNSTAGMIIGKGGSYIKQIKE 146
Query: 197 NSGASVRV--LSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+S +++ S D A ER + + GE KA++ V+ +
Sbjct: 147 DSNVYIQLSQKSRDHA-----LAERSITIIGELEPTRKAVDLVLAKI 188
>gi|256078995|ref|XP_002575777.1| far upstream (fuse) binding protein [Schistosoma mansoni]
gi|360043992|emb|CCD81538.1| putative far upstream (fuse) binding protein [Schistosoma mansoni]
Length = 396
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IG+ GE I + DT+ ++++ +P+R V ++G + + A
Sbjct: 105 IPDRYVGLVIGKGGEQITQLQNDTQCKVQISQ--AGTPERTVTLTGTPQQ---IDHAKQM 159
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ +R A S + ++ ++VP +A +IGK G IK++QE +G +
Sbjct: 160 IGDIIERAGKNGTPTTPAYNSTGSITTIEMMVPGLKAGLVIGKNGETIKNLQEENGVKMV 219
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
++ P T +++ + + GE A+V KA +AV+
Sbjct: 220 LIQQSNNP---TPEDKPLRISGEPARVEKARQAVL 251
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 16/131 (12%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
M+VP LK G +IG+ GE IK E+ ++ VL ++P D+ + ISG EP A
Sbjct: 187 IEMMVPGLKAGLVIGKNGETIKNLQEENGVKM-VLIQQSNNPTPEDKPLRISG--EP-AR 242
Query: 137 VSPAMDAAVRVFK---RVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKS 193
V A A + + R G D + + + VP+ +A +IGK G IK
Sbjct: 243 VEKARQAVLVLINSRDRPGGSMHYGYDGQETS------QYAVPAEKAGLVIGKGGESIKE 296
Query: 194 IQENSGASVRV 204
I SGA V +
Sbjct: 297 ICRVSGAHVEI 307
>gi|242785360|ref|XP_002480578.1| KH domain RNA-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218720725|gb|EED20144.1| KH domain RNA-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 367
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 129/317 (40%), Gaps = 57/317 (17%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R IV + G IIG+ G+ + ++T + V DR++ ++G
Sbjct: 50 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG---------- 99
Query: 140 AMDAAVRVFKRVS-----GLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSI 194
A+ R + V+ G P+ + +RLL+ Q +IG+QG IK I
Sbjct: 100 ALQGCARAYSIVAKGLLEGAPQVGMGGVVQNNGTHPIRLLISHNQMGTIIGRQGLKIKHI 159
Query: 195 QENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ-----G 249
Q+ SG VR+++ E T ERIVE+QG + +E V + K L+D G
Sbjct: 160 QDASG--VRMVAQKEMLPQST--ERIVEVQGTP----EGIEKAVWEIGKCLIDDWQRGTG 211
Query: 250 VLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESR 309
+ L+ SI Q+ D++ + + T + F EP
Sbjct: 212 TV-LYNPAVRVSIGGSGQLNHNGDRTGGSYGGGRSYN-----RTGNGADF--SEPSGGYN 263
Query: 310 YRLSGISIYGQDPALSTIRSSALGRASGPIVTQI-----TQTMQIPISYAEDIIGVGGTS 364
R SG + G + P+VT TQ + IP IIG GG+
Sbjct: 264 RRGSGDN----------------GNRNLPLVTDDGEEVQTQNISIPADMVGCIIGRGGSK 307
Query: 365 IENIRRTSGAIITVQES 381
I IRR+SGA I++ ++
Sbjct: 308 ISEIRRSSGARISIAKA 324
>gi|367027192|ref|XP_003662880.1| hypothetical protein MYCTH_2304021 [Myceliophthora thermophila ATCC
42464]
gi|347010149|gb|AEO57635.1| hypothetical protein MYCTH_2304021 [Myceliophthora thermophila ATCC
42464]
Length = 374
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 131/336 (38%), Gaps = 46/336 (13%)
Query: 56 QSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLD 115
Q GPD P+ + R IV + G IIG+ G+ + E+T + V
Sbjct: 29 QRLGPDGEPAPKTDEEYAQT-QLTLRAIVSSKEAGVIIGKGGKNVADLREETGVKAGVSK 87
Query: 116 GPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLV 175
DR++ ISG E +S A R + G P + ++LL+
Sbjct: 88 VVQGVYDRVLTISGGCEA---ISRAYSVVARSL--LEGAPTMGMGGVIQNNGTHPIKLLI 142
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALE 235
Q +IG+QG IK IQ+ SG VR+++ E ERIVE+QG + +A+
Sbjct: 143 SHNQMGTIIGRQGLKIKYIQDVSG--VRMVAQKE--MLPQSTERIVEVQGTPEGIQRAVW 198
Query: 236 AVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRR 295
+ K LVD YN + + + A S S
Sbjct: 199 EIC----KCLVDDWQRGTGTVLYNPVVRTQ----------GVGAPGISGGS--------- 235
Query: 296 ESLFLEREPQLESRYRLSG----ISIYGQDPALSTIRSSALGRASGPIVTQ------ITQ 345
S +R P SR +G S G P T RS + A GP TQ
Sbjct: 236 -SYMQDRAPYGGSRVTRTGNGADFSGGGSRP--YTRRSDSDPAARGPPTHDENGEEIQTQ 292
Query: 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES 381
+ IP IIG G+ I IR+TSGA I++ ++
Sbjct: 293 NISIPADMVGCIIGRAGSKISEIRKTSGARISIAKA 328
>gi|359486525|ref|XP_002264331.2| PREDICTED: RNA-binding protein Nova-1-like [Vitis vinifera]
Length = 309
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
R +V GS+IG+ G I + ARI++ P DRI++ISG
Sbjct: 36 IRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTSDRIIMISGATNE--- 92
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+ AM+ + + K +S + D D VRL+VP++ +IGK GS IKS E
Sbjct: 93 IIKAME--LILAKLLSEMHTEDGD---EADPRSKVRLIVPNSSCGGIIGKGGSTIKSFIE 147
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+S AS+++ D Y+ +R+V + G + ++A++ ++ L
Sbjct: 148 DSQASIKISPQDNN--YLGLTDRLVTLMGSLEEQMRAIDLILSKL 190
>gi|390335391|ref|XP_003724135.1| PREDICTED: far upstream element-binding protein 3-like isoform 1
[Strongylocentrotus purpuratus]
Length = 695
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 32/178 (17%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPVSSP-DRIVLISGK--- 130
G+ M++P KVG +IG+ GE IK+ E R + + +GPV++ D+ + ISG
Sbjct: 201 GNMTVDMLIPATKVGLVIGKGGETIKQLQEQAGVRMVMIQEGPVATGMDKPLRISGDSQK 260
Query: 131 -EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLI 184
EE + VS M+ A ND ++SG F S ++VP +I
Sbjct: 261 IEEAKRLVSEVMENA----------KNND---RSSGDNFYSRGGPHKDVIVPKHAVGMVI 307
Query: 185 GKQGSLIKSIQENSGASVRVLSAD-EAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
G+ G +IK IQE + A V+ D +AP ER+ + G A V A E++V L
Sbjct: 308 GRGGDMIKRIQEQTKARVQFKPGDRDAP------ERVALITGSAESVSMA-ESMVNDL 358
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 15/165 (9%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEE 132
G GH VP VG IIGR+G+ I ++ I++ S DR V ++G
Sbjct: 119 GRDGHGTEEFFVPNKMVGLIIGRQGQQISSLQSESGCNIQIAPENGISGDRQVTLTGT-- 176
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
PEA M A + V+ +N+ + +V +L+P+T+ +IGK G IK
Sbjct: 177 PEA----VMHAKSLILDIVNKASQNEAEGN------MTVDMLIPATKVGLVIGKGGETIK 226
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+QE +G VR++ E P D + + + G++ K+ +A V
Sbjct: 227 QLQEQAG--VRMVMIQEGPVATGMD-KPLRISGDSQKIEEAKRLV 268
>gi|170586586|ref|XP_001898060.1| KH domain containing protein [Brugia malayi]
gi|158594455|gb|EDP33039.1| KH domain containing protein [Brugia malayi]
Length = 451
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 111/258 (43%), Gaps = 32/258 (12%)
Query: 156 ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVT 215
++D K + + +++LV + A +IG+ GS IK ++E +GA ++V S AP
Sbjct: 206 DHDRRMKKADRSDSEMKVLVHESHAGAVIGRGGSRIKELREKTGAQLKVFSRC-AP---Q 261
Query: 216 EDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQER--QVETWAD 273
ERIV + GE K++ + ++ L++ + V P Y+ I + V
Sbjct: 262 STERIVLLNGEVEKIIDCINIIIDVLKEIPIKGPVRPYDPMYYDPDIISDYGGYVPDRNF 321
Query: 274 KSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRY--RLSGISIYGQDPALSTIRSSA 331
S + S+ PS R P + RY + Y PA+ T
Sbjct: 322 ISRVGRGRDFGFSSGIIPS---------RYPGRDDRYGGMRDMMGRYSPIPAMQT----- 367
Query: 332 LGRASGPIVTQI-TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITV 390
TQ+ T + IP IIG GG+ I +R SGA I V+ R + +
Sbjct: 368 ---------TQVETTDVTIPDELGGAIIGKGGSRINRVREESGAQIEVEPHRDNGGDRII 418
Query: 391 EIKGTSSQVQLAQQLIQE 408
I GT Q+Q AQ L+Q+
Sbjct: 419 TISGTREQIQAAQYLLQQ 436
>gi|383863653|ref|XP_003707294.1| PREDICTED: RNA-binding protein Nova-2-like isoform 1 [Megachile
rotundata]
Length = 514
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISG 129
G G +++VP + G+IIG+ G+ I + +DT A++K+ D + +R+ LI+G
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGAKVKISKSHDFYPGTTERVCLITG 99
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLP-ENDVDA---KASGAAFCSVRLLVPSTQAINLIG 185
E + MD + + L + VD+ K + V++LVP++ A +IG
Sbjct: 100 SLEA---IMAVMDFIMDKIREKPDLTLKTTVDSESGKTTAERDKQVKILVPNSTAGMIIG 156
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
K G+ IK I+E SG+ V++ + V+ ER + + GE AL ++ +
Sbjct: 157 KAGNYIKQIKEESGSYVQI---SQKAKDVSLQERCITVIGEKENNRNALMMILAKV 209
>gi|390335395|ref|XP_003724137.1| PREDICTED: far upstream element-binding protein 3-like isoform 3
[Strongylocentrotus purpuratus]
Length = 689
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 24/174 (13%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPVSSP-DRIVLISGKEEP 133
G+ M++P KVG +IG+ GE IK+ E R + + +GPV++ D+ + ISG
Sbjct: 215 GNMTVDMLIPATKVGLVIGKGGETIKQLQEQAGVRMVMIQEGPVATGMDKPLRISGD--- 271
Query: 134 EAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQG 188
S ++ A R+ V +N + ++SG F S ++VP +IG+ G
Sbjct: 272 ----SQKIEEAKRLVSEVMENAKN--NDRSSGDNFYSRGGPHKDVIVPKHAVGMVIGRGG 325
Query: 189 SLIKSIQENSGASVRVLSAD-EAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+IK IQE + A V+ D +AP ER+ + G A V A E++V L
Sbjct: 326 DMIKRIQEQTKARVQFKPGDRDAP------ERVALITGSAESVSMA-ESMVNDL 372
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 15/162 (9%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
GH VP VG IIGR+G+ I ++ I++ S DR V ++G PEA
Sbjct: 136 GHGTEEFFVPNKMVGLIIGRQGQQISSLQSESGCNIQIAPENGISGDRQVTLTGT--PEA 193
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
M A + V+ +N+ + +V +L+P+T+ +IGK G IK +Q
Sbjct: 194 ----VMHAKSLILDIVNKASQNEAEGN------MTVDMLIPATKVGLVIGKGGETIKQLQ 243
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
E +G VR++ E P D + + + G++ K+ +A V
Sbjct: 244 EQAG--VRMVMIQEGPVATGMD-KPLRISGDSQKIEEAKRLV 282
>gi|327276689|ref|XP_003223100.1| PREDICTED: far upstream element-binding protein 1-like [Anolis
carolinensis]
Length = 660
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 105 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPERSCMLTGTPESVQSAKRLLDQ 164
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 165 IVEKGRPTPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 216
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 217 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLDLIR----DQGGFREVRNEYGSRIG 271
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 181 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 237
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G V +P +IG+ G
Sbjct: 238 -DPYK-VQQAKEMVLDLIRDQGGFREVRNEYGSRIGGNEGLDV--PIPRFAVGIVIGRNG 293
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 294 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 342
>gi|148229383|ref|NP_001090529.1| far upstream element (FUSE) binding protein 1 [Xenopus laevis]
gi|25992563|gb|AAN77161.1| FUSE binding protein-like protein [Xenopus laevis]
Length = 610
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ PDR +++G + +D
Sbjct: 95 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPDRSCMLTGSPDSVQEAKMLLDQ 154
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G G+ +++P+++A +IGK G IK +QE +G V+
Sbjct: 155 IVEKGRPTPGF------HHGEGSGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 206
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 207 MVMIQDGPQNTGAD-KPLRIAGDPYKVQQAKEMVL----ELICDQGGFREVRNEYGSRIG 261
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 18/173 (10%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGKE 131
G+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 172 GNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRIAG-- 227
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGS 189
+P V A + + + G E N+ ++ G + L +IG+ G
Sbjct: 228 DPYK-VQQAKEMVLELICDQGGFREVRNEYGSRIGGNE--GIDFLYHDVAVGIVIGRNGE 284
Query: 190 LIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D + ER+ ++ G + A E V LR
Sbjct: 285 MIKKIQNDAGVRIQFKPDDG-----STPERVAQITGPQDRCQHAAEIVNDLLR 332
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 87 LKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVR 146
+ VG +IGR GE+IKK D RI+ S+P+R+ I+G ++ + ++ +R
Sbjct: 273 VAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGSTPERVAQITGPQDRCQHAAEIVNDLLR 332
Query: 147 VFKRVSGLPENDVDAKASG----------AAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+ + +VPS + +IGK G IK+I +
Sbjct: 333 SVQSGNAGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFVVPSVKTGLIIGKGGETIKNISQ 392
Query: 197 NSGASVRV 204
SGA + +
Sbjct: 393 QSGARIEL 400
>gi|400593892|gb|EJP61786.1| KH domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 373
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 148/367 (40%), Gaps = 42/367 (11%)
Query: 59 GPDAAAVPE-EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP 117
GPD P+ ++++ R IV + G IIG+ G+ + ++T + V
Sbjct: 28 GPDGEPAPKTDEEYA--QAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVV 85
Query: 118 VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPS 177
DR++ I+G + +S A R + G P + G ++LL+
Sbjct: 86 QGVHDRVLTITGGCDA---ISRAYAIVARAL--LEGAPAMGMGGILQGNGTHPIKLLISH 140
Query: 178 TQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
Q +IG+QG IK IQ+ SG VR+++ E T ERIVE+QG + +AL +
Sbjct: 141 NQMGTVIGRQGLKIKHIQDVSG--VRMVAQKEMLPQST--ERIVEVQGTPEGIQRALWEI 196
Query: 238 VGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRES 297
K LVD YN + + + AT + EY+
Sbjct: 197 C----KCLVDDWQRGTGTVLYNPVVRTQPGTTGGTGSTGSFGATGNG-RAEYS------- 244
Query: 298 LFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQ------ITQTMQIPI 351
P++ S S G + RS + + GP TQ + IP
Sbjct: 245 -----SPRVMRTGNGSDFSNGGGGTRPFSRRSDSDAASRGPPTHDENGEEIQTQNISIPA 299
Query: 352 SYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQ 407
IIG G+ I IR+TSGA I++ ++ P + T E I GT+ + A L+
Sbjct: 300 DMVGCIIGRAGSKISEIRKTSGARISIAKA---PHDETGERMFTIMGTAKANESALFLLY 356
Query: 408 EYMNNHK 414
E + K
Sbjct: 357 ENLEAEK 363
>gi|343427422|emb|CBQ70949.1| related to PBP2-PAB1 binding protein [Sporisorium reilianum SRZ2]
Length = 416
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 92 IIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRV 151
IIG+ G+ I + + + AR+ + + +P+RI+ +SG P VS A VR R+
Sbjct: 127 IIGKSGKHINEIRDKSNARLNISEIIPGNPERILTVSG---PLDAVSKAFGLIVR---RI 180
Query: 152 SGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAP 211
+ P + G+ ++R +VP+++ ++IGKQGS IK IQE SGA L+A EA
Sbjct: 181 NDEPFDQ--PSVPGSKSVTIRFIVPNSRMGSVIGKQGSKIKEIQEASGAR---LTAGEA- 234
Query: 212 FYVTEDERIVEMQGEAAKVLKAL 234
ER++ + G A V A+
Sbjct: 235 MLPGSTERVLSISGVADAVHIAV 257
>gi|256078997|ref|XP_002575778.1| far upstream (fuse) binding protein [Schistosoma mansoni]
gi|360043991|emb|CCD81537.1| putative far upstream (fuse) binding protein [Schistosoma mansoni]
Length = 373
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IG+ GE I + DT+ ++++ +P+R V ++G + + A
Sbjct: 105 IPDRYVGLVIGKGGEQITQLQNDTQCKVQISQ--AGTPERTVTLTGTPQQ---IDHAKQM 159
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ +R A S + ++ ++VP +A +IGK G IK++QE +G +
Sbjct: 160 IGDIIERAGKNGTPTTPAYNSTGSITTIEMMVPGLKAGLVIGKNGETIKNLQEENGVKMV 219
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
++ P T +++ + + GE A+V KA +AV+
Sbjct: 220 LIQQSNNP---TPEDKPLRISGEPARVEKARQAVL 251
>gi|432911382|ref|XP_004078652.1| PREDICTED: uncharacterized protein LOC101169884 [Oryzias latipes]
Length = 666
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 23/167 (13%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R V ++G ++ ++ A
Sbjct: 105 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPERSVTLTGPQD-------SIQA 157
Query: 144 AVRVFKRV--SGLP-----ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A R+ + G P ND G ++VP+++A +IGK G IKS+QE
Sbjct: 158 AKRLLSEIVEKGRPAPAFHHND------GPGMTVQEIMVPASKAGLVIGKGGETIKSLQE 211
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
+G V+++ + P D + + + GE KV +A E V+ +R+
Sbjct: 212 RAG--VKMVMIQDGPQNTGAD-KPLRISGEPFKVQQAKEMVMELIRE 255
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 51/133 (38%), Gaps = 15/133 (11%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG +IGR GE+IKK DT RI+ S+PDRI I G P A D
Sbjct: 278 VPRFAVGIVIGRNGEMIKKIQNDTGVRIQFKPDDGSAPDRIAQIMG---PPDQAQHAADI 334
Query: 144 AVRVFKRVSGLPENDVDAKASG------------AAFCSVRLLVPSTQAINLIGKQGSLI 191
+ + V VP+ + +IGK G I
Sbjct: 335 IADLLRSVQSGGPPGHGGGRGRGRGQGNWNMGPPGGLQEFTFTVPTMKTGLIIGKGGETI 394
Query: 192 KSIQENSGASVRV 204
K I + SGA + +
Sbjct: 395 KGISQQSGARIEL 407
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 22/175 (12%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG V ++VP K G +IG+ GE IK E RA +K++ DGP ++ D+ + ISG
Sbjct: 181 PGMTVQEIMVPASKAGLVIGKGGETIKSLQE--RAGVKMVMIQDGPQNTGADKPLRISG- 237
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
EP V A + + + R G E + ++ G S+ + VP +IG+ G
Sbjct: 238 -EPFK-VQQAKEMVMELI-REQGFREQRGEYGSRIGGE---SLDVPVPRFAVGIVIGRNG 291
Query: 189 SLIKSIQENSGASVRVLSAD-EAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D AP +RI ++ G + A + + LR
Sbjct: 292 EMIKKIQNDTGVRIQFKPDDGSAP------DRIAQIMGPPDQAQHAADIIADLLR 340
>gi|387015918|gb|AFJ50078.1| Far upstream element-binding protein 1-like [Crotalus adamanteus]
Length = 682
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 13/179 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 126 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 185
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 186 IVEKGRPTPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 237
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASI 262
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 238 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLDLIR----DQGGFREVRNEYGSRI 291
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 202 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 258
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G V +P +IG+ G
Sbjct: 259 -DPYK-VQQAKEMVLDLIRDQGGFREVRNEYGSRIGGNEGLDV--PIPRFAVGIVIGRNG 314
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 315 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 363
>gi|156375798|ref|XP_001630266.1| predicted protein [Nematostella vectensis]
gi|156217283|gb|EDO38203.1| predicted protein [Nematostella vectensis]
Length = 688
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 154/359 (42%), Gaps = 44/359 (12%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP----VSSPDRIVLISGKEEPEAPVSP 139
+P VG +IGR GE I K +T ARI+V P +S PDR V I G +
Sbjct: 163 IPNKYVGLVIGRGGEQINKLQSETGARIQVAPDPPAGMMSPPDRSVTIGGTVQ------- 215
Query: 140 AMDAAVRVFKRVS---GLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A++ A +V ++ +P++ + + +++P+++ +IGK G IK++QE
Sbjct: 216 AVEKAKQVLNKICEEGKIPDSLMSVPVVAPGEQVIEMMIPASKVGLIIGKGGETIKNLQE 275
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG--VLPLF 254
A R++ + P Y E+ + + G+ + + + V L + ++Q L
Sbjct: 276 R--AQCRMVMVQDGP-YANAPEKPLRIMGDNTRCQRGKDLVTDLLTEKELEQSKPALDFL 332
Query: 255 EKTYN--------ASISQERQVETW----ADKSSLHAATQSAISTEYTP------STRRE 296
K + I R V + ++ +S ++ P S+ R
Sbjct: 333 GKRQDNRQLGATTLEIPVPRDVVGFVIGKGGETIKRIQAESGARVQFNPAKDNPNSSDRM 392
Query: 297 SLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAED 356
+ + Q++ ++ I + A+ P + T M +P +
Sbjct: 393 ATVQGSQEQIQKVEKIINEIISQVESRQRGGPPPRGPPANMPGIN--TLEMPVPGNKCGL 450
Query: 357 IIGVGGTSIENIRRTSGAIITVQESRGLPDEITVE---IKGTSSQVQLAQQLIQEYMNN 412
IIG GG +I+ I SGA V+ +R +P+ + I+GT Q+Q A+++I E +++
Sbjct: 451 IIGKGGETIKQIIAVSGA--HVELNRNVPENNPTKFFVIRGTDQQIQQAEKMINEKISD 507
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 39/187 (20%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPVSS----PDRIV---- 125
PG V M++P KVG IIG+ GE IK E + R + V DGP ++ P RI+
Sbjct: 245 PGEQVIEMMIPASKVGLIIGKGGETIKNLQERAQCRMVMVQDGPYANAPEKPLRIMGDNT 304
Query: 126 -----------LISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
L++ KE ++ PA+D + KR D + GA ++ +
Sbjct: 305 RCQRGKDLVTDLLTEKELEQS--KPALDF---LGKRQ--------DNRQLGAT--TLEIP 349
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
VP +IGK G IK IQ SGA V+ A + P +R+ +QG ++ K +
Sbjct: 350 VPRDVVGFVIGKGGETIKRIQAESGARVQFNPAKDNP---NSSDRMATVQGSQEQIQK-V 405
Query: 235 EAVVGHL 241
E ++ +
Sbjct: 406 EKIINEI 412
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEE 132
G + VP VG +IG+ GE IK+ ++ AR++ D P SS DR+ + G +E
Sbjct: 342 GATTLEIPVPRDVVGFVIGKGGETIKRIQAESGARVQFNPAKDNPNSS-DRMATVQGSQE 400
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
V ++ + + A+ ++ + VP + +IGK G IK
Sbjct: 401 QIQKVEKIINEIISQVESRQRGGPPPRGPPANMPGINTLEMPVPGNKCGLIIGKGGETIK 460
Query: 193 SIQENSGASVRV 204
I SGA V +
Sbjct: 461 QIIAVSGAHVEL 472
>gi|390335393|ref|XP_003724136.1| PREDICTED: far upstream element-binding protein 3-like isoform 2
[Strongylocentrotus purpuratus]
Length = 696
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 32/178 (17%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPVSSP-DRIVLISGK--- 130
G+ M++P KVG +IG+ GE IK+ E R + + +GPV++ D+ + ISG
Sbjct: 201 GNMTVDMLIPATKVGLVIGKGGETIKQLQEQAGVRMVMIQEGPVATGMDKPLRISGDSQK 260
Query: 131 -EEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS-----VRLLVPSTQAINLI 184
EE + VS M+ A ND ++SG F S ++VP +I
Sbjct: 261 IEEAKRLVSEVMENA----------KNND---RSSGDNFYSRGGPHKDVIVPKHAVGMVI 307
Query: 185 GKQGSLIKSIQENSGASVRVLSAD-EAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
G+ G +IK IQE + A V+ D +AP ER+ + G A V A E++V L
Sbjct: 308 GRGGDMIKRIQEQTKARVQFKPGDRDAP------ERVALITGSAESVSMA-ESMVNDL 358
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 15/156 (9%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAM 141
++VP VG IIGR+G+ I ++ I++ S DR V ++G PEA M
Sbjct: 128 LLVPDKVVGLIIGRQGQQISSLQSESGCNIQIAPENGISGDRQVTLTGT--PEA----VM 181
Query: 142 DAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS 201
A + V+ +N+ + +V +L+P+T+ +IGK G IK +QE +G
Sbjct: 182 HAKSLILDIVNKASQNEAEGN------MTVDMLIPATKVGLVIGKGGETIKQLQEQAG-- 233
Query: 202 VRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
VR++ E P D + + + G++ K+ +A V
Sbjct: 234 VRMVMIQEGPVATGMD-KPLRISGDSQKIEEAKRLV 268
>gi|348537889|ref|XP_003456425.1| PREDICTED: RNA-binding protein Nova-1-like isoform 2 [Oreochromis
niloticus]
Length = 496
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 36/203 (17%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G ++++P GSIIG+ G+ I + ++T A IK+ P +R+ LI G
Sbjct: 28 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 87
Query: 130 KEEP-------------EAPVSPAMDAAVRVFK--------RVS--------GLPENDVD 160
E E P S V + + RV P+ D +
Sbjct: 88 TVEALNGVHDFIAEKVREMPQSTQKTEPVSILQPQTTVNPDRVKQTLPTACHTTPKEDAN 147
Query: 161 AKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERI 220
+ S A S +L+VP++ A +IGK G+ +K++ E SGA V++ + P + ER+
Sbjct: 148 PEKSRRA-NSAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERV 203
Query: 221 VEMQGEAAKVLKALEAVVGHLRK 243
V + GE + KA+E +V +++
Sbjct: 204 VTISGEPEQNRKAVEIIVQKIQE 226
>gi|296085941|emb|CBI31382.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
R +V GS+IG+ G I + ARI++ P DRI++ISG
Sbjct: 84 IRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTSDRIIMISGATNE--- 140
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+ AM+ + + K +S + D D VRL+VP++ +IGK GS IKS E
Sbjct: 141 IIKAME--LILAKLLSEMHTEDGD---EADPRSKVRLIVPNSSCGGIIGKGGSTIKSFIE 195
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
+S AS+++ D Y+ +R+V + G + ++A++ ++ L
Sbjct: 196 DSQASIKISPQDNN--YLGLTDRLVTLMGSLEEQMRAIDLILSKL 238
>gi|242002844|ref|XP_002436065.1| RNA-binding protein Nova-1, putative [Ixodes scapularis]
gi|215499401|gb|EEC08895.1| RNA-binding protein Nova-1, putative [Ixodes scapularis]
Length = 474
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 10/174 (5%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISG 129
G G F+++VP + G+IIG+ GE I ++ AR+K+ P +R+ LI+G
Sbjct: 45 GGNGTYHFKILVPAVAAGAIIGKGGETIALLQKEAGARVKMSKSNDFYPGTTERVCLITG 104
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGS 189
E + + ++ + D D K V++LVP++ A +IGK GS
Sbjct: 105 SVEGVLRIHEFIMEKIKEKPDPTAKIAIDFDHKQPAEREKQVKILVPNSTAGMIIGKGGS 164
Query: 190 LIKSIQENSGASVRV--LSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
IK I+E SGA V++ S D A ER + + GE KA ++ +
Sbjct: 165 YIKQIKEESGAYVQISQKSKDHA-----LAERCITVIGELENNKKACHMILAKI 213
>gi|443700302|gb|ELT99335.1| hypothetical protein CAPTEDRAFT_173082 [Capitella teleta]
Length = 552
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 23/182 (12%)
Query: 77 HCV---FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGK 130
HC +++VP + G+IIG+ GE I ++T A +K+ P +R+ L++G
Sbjct: 42 HCANISLKVLVPSIAAGAIIGKGGETITDIQKETGATVKMSKNNDFYPGTSERVCLVNGT 101
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE-----NDVDAKASGAAFCSVRLLVPSTQAINLIG 185
+ V + +R+ P+ + + KA+ +++LVP++ A +IG
Sbjct: 102 ------LDSVRKVIVFIMERIREKPDPNPKPCEGEMKANYERHKQMKILVPNSTAGMVIG 155
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
K G+ I+ I+++SGA V+V + ++ ER V + G+ + +A++ V L K +
Sbjct: 156 KGGAFIRQIKDDSGAYVQVSQKSKD---MSLPERCVTIAGDTEQNREAIDLV---LEKIM 209
Query: 246 VD 247
D
Sbjct: 210 ED 211
>gi|299116281|emb|CBN76089.1| poly(rc) binding protien (Partial) [Ectocarpus siliculosus]
Length = 334
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 27/143 (18%)
Query: 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS----SPDRIVLISGKEEP- 133
V R+++P K+G++IG+ G +IK E + A++ + D S DR+V +G
Sbjct: 102 VSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHGDSDDRMVTAAGTFNSV 161
Query: 134 ----------EAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINL 183
V P D V GL D D A+ S RLL+P+ +A L
Sbjct: 162 QLAFTHILSHAGAVGPDADP-------VMGLAGGDPDCVAN-----SFRLLIPNVKAGGL 209
Query: 184 IGKQGSLIKSIQENSGASVRVLS 206
IG+ G IK+I+E SGA + + S
Sbjct: 210 IGRGGCTIKAIREQSGARIEISS 232
>gi|268567874|ref|XP_002640100.1| Hypothetical protein CBG12588 [Caenorhabditis briggsae]
Length = 398
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
R++V G+IIG+ GE IK+ + A ++V D ++P+R+ ++ E+
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTVTADEK-------- 102
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + K V E++ + C VR+L+ + A LIG+ G+ IK ++E A
Sbjct: 103 --TVLNILKDVLPRLEDNFSERDP----CEVRVLIHQSHAGALIGRNGTKIKELREKCSA 156
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+++ + AP +R++ GE VL +E V+ L++ + P
Sbjct: 157 RLKIFTGC-AP---GSTDRVLITSGEQKNVLAIIEEVMKELKEIPIKGSATPYL 206
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQ 403
T + IP IIG GG I IR+ SGA IT++ S G P+ I + IKGT Q+ AQ
Sbjct: 319 TAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEPSNGQPERI-ITIKGTEQQIHSAQ 377
Query: 404 QLIQEYMNN 412
L+Q+ + N
Sbjct: 378 YLLQQCVRN 386
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV-SSPDRIVLISGKEE 132
C R+++ G++IGR G IK+ E AR+K+ G S DR+++ SG+++
Sbjct: 125 CEVRVLIHQSHAGALIGRNGTKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQK 180
>gi|358334721|dbj|GAA27863.2| RNA-binding protein Nova [Clonorchis sinensis]
Length = 759
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 11/185 (5%)
Query: 60 PDAAAVPEEK-KWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPV 118
PD +PE K + ++++P + G++IG+ GE I K +DT ++K+
Sbjct: 19 PDDVLLPETTPKRANCDDNVHLKVLIPSIAAGAVIGKYGEAIGKIQKDTNTKVKISKQDE 78
Query: 119 SSP---DRIVLISGKEEPEAPV-SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLL 174
P +R+ LI G E V + MD R+ ++ P + + + V++L
Sbjct: 79 FYPGTTERVCLIVGSMEGVMSVHNYIMD---RILEKPDPNPHATCEGRLNVERHKQVKIL 135
Query: 175 VPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
VP++ A +IGK GS I+ I+E +GA V++ S F + ER + + G+ + A+
Sbjct: 136 VPNSTAGMVIGKGGSYIQEIKEKTGAYVQI-SQKSREFNLL--ERCIIIAGDLDQTRAAV 192
Query: 235 EAVVG 239
+ ++
Sbjct: 193 QLILA 197
>gi|427792951|gb|JAA61927.1| Putative rna-binding protein nova1/pasilla, partial [Rhipicephalus
pulchellus]
Length = 448
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
F+++VP + G+IIG+ GE I ++ AR+K+ P +R+ LI+G E
Sbjct: 40 FKILVPAVAAGAIIGKGGETIALLQKEAGARVKMSKSNDFYPGTTERVCLITGSVEGVLR 99
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
+ + ++ + D D K V++LVP++ A +IGK GS IK I+E
Sbjct: 100 IHEFIMEKIKEKPDPTAKIAIDFDHKQPAEREKQVKILVPNSTAGMIIGKGGSYIKQIKE 159
Query: 197 NSGASVRV--LSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
SGA V++ S D A ER + + GE KA + ++ +
Sbjct: 160 ESGAYVQISQKSKDHAL-----AERCITVIGEMDNNKKACQLILAKI 201
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 162 KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+ASG ++LVP+ A +IGK G I +Q+ +GA V++ +++ FY ER+
Sbjct: 31 RASGNGTFHFKILVPAVAAGAIIGKGGETIALLQKEAGARVKMSKSND--FYPGTTERVC 88
Query: 222 EMQGEAAKVLKALEAVV 238
+ G VL+ E ++
Sbjct: 89 LITGSVEGVLRIHEFIM 105
>gi|170580792|ref|XP_001895410.1| KH domain containing protein [Brugia malayi]
gi|158597654|gb|EDP35742.1| KH domain containing protein [Brugia malayi]
Length = 439
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 83/162 (51%), Gaps = 6/162 (3%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAPV 137
++++P VG++IG+ GE ++ ++ R+++ P +RI L+ GK V
Sbjct: 37 KVLIPSAAVGALIGKGGETMRNLKSESGCRLQMSKNQEVYPGTNERICLVKGKIASVLKV 96
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
S + +R ++V +D+ ++L+VP+T A +IGK G+ IK I+E
Sbjct: 97 SDVILEKIR--EKVDNNTPSDIFDHKGMERKNEMKLVVPNTSAGMVIGKSGARIKEIREQ 154
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVL-KALEAVV 238
+GA+++V + ERI+ + E +VL AL+ V+
Sbjct: 155 TGANIQVYPKAGSQEAKVSQERIITIAAEQDEVLMDALQRVL 196
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEA 227
V++L+PS LIGK G +++++ SG +++ E Y +ERI ++G+
Sbjct: 33 MVQVKVLIPSAAVGALIGKGGETMRNLKSESGCRLQMSKNQEV--YPGTNERICLVKGKI 90
Query: 228 AKVLKALEAVVGHLRK 243
A VLK + ++ +R+
Sbjct: 91 ASVLKVSDVILEKIRE 106
>gi|390604812|gb|EIN14203.1| hypothetical protein PUNSTDRAFT_95868 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 330
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 143/349 (40%), Gaps = 57/349 (16%)
Query: 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE 131
P P R +V G IIG+ G+ + + T + V DR++ ISG
Sbjct: 22 PAGPDTLTLRALVSTKDAGVIIGKGGKNVADLRDQTGVKAGVSKVVPGVHDRVLTISGSV 81
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
+ A + V + V+ P + + A +S S+RLL+ +IG+ G+ I
Sbjct: 82 DRVAKA-----YGLIVAQLVASNPTSPISASSS--THTSLRLLISHNLMGTIIGRGGTRI 134
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVL 251
K+IQ+NSGA + V S D P ER+VE+ G ++A+E V + K L++
Sbjct: 135 KAIQDNSGARM-VASKDMLP---QSTERVVEVHGS----VEAIERAVDDIGKSLLEDWER 186
Query: 252 PLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
L ++ ER + S+RR S E+R
Sbjct: 187 GLGTVLFHPGAGDER-----------------------SGSSRRYS---------ENRGS 214
Query: 312 LSGISIYGQDPALSTIRSSALGRASGPIVTQI-TQTMQIPISYAEDIIGVGGTSIENIRR 370
G P + S + S P T + TQ + IP IIG GG+ I IRR
Sbjct: 215 YGGSRQSNGRPG--SPGSPSRQAPSSPQPTNLRTQNISIPSDMVGCIIGRGGSKITEIRR 272
Query: 371 TSGAIITVQESRGLPDEITVE----IKGTSSQVQLAQQLIQEYMNNHKE 415
SG+ I++ ++ P + T E I GT + A L+ + + KE
Sbjct: 273 LSGSKISIAKA---PHDETGERMFTIVGTPEANEKALFLLYNQLESEKE 318
>gi|402594254|gb|EJW88180.1| hypothetical protein WUBG_00913 [Wuchereria bancrofti]
Length = 407
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 83/162 (51%), Gaps = 6/162 (3%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAPV 137
++++P VG++IG+ GE ++ ++ R+++ P +RI L+ GK V
Sbjct: 5 KVLIPSAAVGALIGKGGETMRNLKSESGCRLQMSKNQEVYPGTNERICLVKGKIASVLKV 64
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
S + +R ++V +D+ ++L+VP+T A +IGK G+ IK I+E
Sbjct: 65 SDVILEKIR--EKVDNNTPSDIFDHKGMERKNEMKLVVPNTSAGMVIGKSGARIKEIREQ 122
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVL-KALEAVV 238
+GA+++V + ERI+ + E +VL AL+ V+
Sbjct: 123 TGANIQVYPKAGSQEAKVSQERIITIAAEQDEVLMDALQRVL 164
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEA 227
V++L+PS LIGK G +++++ SG +++ E Y +ERI ++G+
Sbjct: 1 MVQVKVLIPSAAVGALIGKGGETMRNLKSESGCRLQMSKNQEV--YPGTNERICLVKGKI 58
Query: 228 AKVLKALEAVVGHLRK 243
A VLK + ++ +R+
Sbjct: 59 ASVLKVSDVILEKIRE 74
>gi|406866225|gb|EKD19265.1| KH domain RNA binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 545
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 94/411 (22%), Positives = 156/411 (37%), Gaps = 73/411 (17%)
Query: 37 PTIGSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRK 96
P ++ +E T+ S LP A+ + GW R ++ + ++IG+
Sbjct: 88 PDASAQQSESTSTSAQDLP------ASGSHLQHDESGW---IHIRAVITSAEAATVIGKG 138
Query: 97 GELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPE 156
GE + + + A+ V D + +RI+ +SG +DAA + F +
Sbjct: 139 GENVSSIRKMSGAKCTVSDYQKGAVERILTVSG----------VVDAAAKAFGLIIRTLN 188
Query: 157 ND-VDAKASGAAFC-SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYV 214
N+ ++A +S + +RLL+P ++IGK G I+ IQE SGA L+A ++ +
Sbjct: 189 NEPLEAPSSAQSKTYPLRLLIPHILIGSIIGKGGVRIREIQEASGAR---LNASDSCLPL 245
Query: 215 TEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN-------ASISQERQ 267
+ + +V VL +AV H+ + V + + + AS S
Sbjct: 246 STERSLV--------VLGVADAV--HIATYYVGSTLFEQLSERFGGPAASAYASRSGGPA 295
Query: 268 VETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISI---------- 317
+ Q A P RR + P SG
Sbjct: 296 GVVPGGMQVVPYVPQPAGGNFGHPDHRRHQERPHQTPSQGYNQPYSGHGQPQPQQPGNPM 355
Query: 318 -YGQDPAL------------STIRSSALGRASGPIVTQ---------ITQTMQIPISYAE 355
YG P + G +GPI Q +TQ + IP
Sbjct: 356 HYGGSPVVQGGYGGTGPQQPHQAHMGGPGPHAGPIPPQGGPVVPGQPLTQQIFIPNDMVG 415
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
IIG GG I IR+ SG++I + E + +E V I GT+ Q+A ++
Sbjct: 416 AIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTAECNQMALYML 466
>gi|258574629|ref|XP_002541496.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901762|gb|EEP76163.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 491
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 152/380 (40%), Gaps = 58/380 (15%)
Query: 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEA 135
G R ++ + + IG+ GE + + + A+ V D + +RI+ +SG +
Sbjct: 130 GFIHIRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYTRGAVERILTVSGPQ---- 185
Query: 136 PVSPAMDAAVRVFKRVSGLPEND-VDAKASGAAFC-SVRLLVPSTQAINLIGKQGSLIKS 193
DA + F + N+ +DA ++ + +RLL+P ++IGK G I+
Sbjct: 186 ------DAVAKAFGLIIRTLNNEPLDAPSTAQSKTYPLRLLIPHILIGSIIGKSGVRIRE 239
Query: 194 IQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPL 253
IQE+SGA R+ ++D T ER + + G A V A V L + L ++ P
Sbjct: 240 IQEHSGA--RLNASDSCLPLST--ERSLVILGVADAVHIATYYVAATLVEQLTERFGGPA 295
Query: 254 FEKTYNAS------ISQERQVETWADKSS------------LHAATQSAISTEY------ 289
S I QV + + + H A+ST Y
Sbjct: 296 ASAYATRSGGPAGVIPGGMQVVPYVPQPAGGQYGHPDSFKRHHPQANRAMSTGYGMPYMQ 355
Query: 290 -----TPSTRRESLFLEREPQLESRYRLSG---ISIYG--QDPALSTIRSSALGR--ASG 337
+P ++ + P+ Y +G + YG Q P + +G A G
Sbjct: 356 GGPGPSPHAMQQPIHYNASPR--QGYTGAGPHQPAPYGAPQPPHSHGTPAQPMGAPVAGG 413
Query: 338 PIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSS 397
P+ QI IP IIG GG I IR SG++I + E + +E V I GT
Sbjct: 414 PLTQQIF----IPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQE 469
Query: 398 QVQLAQQLIQEYMNNHKESI 417
Q+A ++ + K++
Sbjct: 470 CNQMALYMLYSRLGESKQTF 489
>gi|313245372|emb|CBY40123.1| unnamed protein product [Oikopleura dioica]
Length = 412
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 145/351 (41%), Gaps = 64/351 (18%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCE--DTRARIKV--LDGPVSSPDRIVLISGKEEPEA 135
+M+VP VG+IIG+ G +++ + D+RAR+ V +GP S D++ I G PEA
Sbjct: 40 LKMLVPASVVGAIIGKGGSTVRQITQLKDSRARVDVHRREGPGS--DKVATIYG--APEA 95
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
AA+R+ + V E D + +++L + LIG+ G +K +Q
Sbjct: 96 ----CGAAAIRILEIVRK-EEKDNE--------LPLKVLAHNALIGRLIGRDGRNLKHVQ 142
Query: 196 ENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLF 254
+ +G + + S E +P+ + +R + + GE + +A + + LR+F D +
Sbjct: 143 DKTGTRIAISSMHELSPYNM---DRTISIHGEVKGISEAEQQITEKLRQFETDMAAMSQ- 198
Query: 255 EKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSG 314
+ Y SQ+ Q+ + A + Y +S+F SG
Sbjct: 199 QSLYPGLNSQQMQMFPGLQSPTAPPAYNVSYQGSYFFKNVSQSVF------------FSG 246
Query: 315 ISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA 374
S TQ T T+ IP IIG GT I NI R +GA
Sbjct: 247 NSSSNN--------------------TQETVTLLIPSGAVGAIIGSRGTHIRNISRIAGA 286
Query: 375 IITVQESRGLPDEITVEIKGT-----SSQVQLAQQLIQE-YMNNHKESITS 419
I + + + V I G +Q + +L QE + N + +T+
Sbjct: 287 SIRIHVNADRDAKARVTIVGVPESQWKAQFCIFDKLKQEGWFGNEEGRLTT 337
>gi|395839829|ref|XP_003792778.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Otolemur garnettii]
Length = 575
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 22/175 (12%)
Query: 52 SALPQSTGPDAA--AVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRA 109
S LP +GP A A P + +P + + +P VG+IIG+KG IK+ A
Sbjct: 377 SVLPPPSGPRGAPPAAPYHP-FAQYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGA 435
Query: 110 RIKVLDGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA 166
IK+ P PD R+V+I+G PEA A R+F ++ EN + K
Sbjct: 436 SIKI--APAEGPDVSERMVIITGP--PEA----QFKAQGRIFGKLK--EENFFNPKEEVK 485
Query: 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+R VPS+ A +IGK G + +Q + A V ++ D+ P E+E ++
Sbjct: 486 LEAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 534
>gi|426215782|ref|XP_004002148.1| PREDICTED: far upstream element-binding protein 1 isoform 3 [Ovis
aries]
Length = 665
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 128 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 187
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 188 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 239
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 240 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 294
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 204 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 260
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 261 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 316
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 317 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 365
>gi|350529339|ref|NP_001121330.2| KH-type splicing regulatory protein precursor [Xenopus laevis]
Length = 732
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +++ ++++ P+R+V ++G P+A V A
Sbjct: 158 VPDGMVGLIIGRGGEQINKIQQESGCKVQISPDSGGMPERVVSLTG--SPDA-VQNAKML 214
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ R G P + ++G +++P+ +A +IGK G IK +QE +G +
Sbjct: 215 LDDIVARGRGGPPSQFHDSSNGQNGSLQEIMIPAGKAGLIIGKGGETIKQLQERAGVKMI 274
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
++ + + RIV GE KV +A E V+ L++
Sbjct: 275 LIQDGSQNTNMDKPLRIV---GEPFKVQQACEMVMDLLKE 311
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG 129
VP VG +IGR G++IKK D RI+ + PD+I I G
Sbjct: 339 VPRHSVGVVIGRSGDMIKKIQNDAGVRIQFKQDDGTGPDKIAHIMG 384
>gi|332809276|ref|XP_003308215.1| PREDICTED: far upstream element-binding protein 1 [Pan troglodytes]
gi|397472596|ref|XP_003807826.1| PREDICTED: far upstream element-binding protein 1 isoform 2 [Pan
paniscus]
gi|426330098|ref|XP_004026061.1| PREDICTED: far upstream element-binding protein 1 isoform 2
[Gorilla gorilla gorilla]
gi|194390162|dbj|BAG61843.1| unnamed protein product [Homo sapiens]
Length = 665
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 128 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 187
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 188 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 239
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 240 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 294
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 204 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 260
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 261 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 316
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T ERI ++ G + A E + LR
Sbjct: 317 EMIKKIQNDAGVRIQFKPDDG-----TTPERIAQITGPPDRCQHAAEIITDLLR 365
>gi|58259741|ref|XP_567283.1| cytoplasm protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134116752|ref|XP_773048.1| hypothetical protein CNBJ3240 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255668|gb|EAL18401.1| hypothetical protein CNBJ3240 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229333|gb|AAW45766.1| cytoplasm protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 357
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 17/192 (8%)
Query: 43 NTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKK 102
+ E E S+ P A A P+ PG P R ++ IIGR G + +
Sbjct: 50 DVEMQNEGSPKTAPSSEPTAPAKPD----PG-PQQISMRSLIVTQDASIIIGRGGAHVNE 104
Query: 103 TCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAK 162
E + AR+ V + +P+RI+ +SG P+ A + +R++ P DV +
Sbjct: 105 IREKSSARVTVSESIPGNPERILNVSG------PLDAVAKAFGLIVRRINDEP-FDVPS- 156
Query: 163 ASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
G+ +++ ++P+++ ++IGK GS IK IQE SGA L+A EA ER++
Sbjct: 157 VPGSRAVTIKFIIPNSRMGSVIGKGGSKIKEIQEASGAR---LNASEA-MLPGSTERVLS 212
Query: 223 MQGEAAKVLKAL 234
+ G A V A+
Sbjct: 213 VSGVADAVHIAV 224
>gi|257205944|emb|CAX82623.1| putative KH-type splicing regulatory protein [Schistosoma
japonicum]
Length = 513
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IG+ GE I + DT+ ++++ +P+R V ++G + + A
Sbjct: 82 IPDRFVGLVIGKGGEQITQLQNDTQCKVQISQ--AGTPERTVTLTGTPQQ---IDHAKQM 136
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ +R S + ++ ++VP +A +IGK G IK++QE +G +
Sbjct: 137 IGDIIERAGKNGTPTTTTYNSTGSITTIEMMVPGLKAGLVIGKNGETIKNLQEENGVKMV 196
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
++ P T +++ + + GE ++V KA +AV+
Sbjct: 197 LIQQSNNP---TPEDKPLRISGEPSRVEKARQAVL 228
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSSPDRIVLISGKEEPEAP 136
M+VP LK G +IG+ GE IK E+ ++ ++ + P D+ + ISG+
Sbjct: 164 IEMMVPGLKAGLVIGKNGETIKNLQEENGVKMVLIQQSNNPTPE-DKPLRISGEPSRVEK 222
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A+ + R G D + + + VP+ +A +IGK G IK I
Sbjct: 223 ARQAVLVLINSRDRPGGSIHYGYDGQETS------QYAVPAEKAGLVIGKGGESIKEICR 276
Query: 197 NSGASVRV 204
SGA V +
Sbjct: 277 VSGAHVEI 284
>gi|451856005|gb|EMD69296.1| hypothetical protein COCSADRAFT_78008 [Cochliobolus sativus ND90Pr]
Length = 574
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 89 VGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVF 148
VG +IGR+GE +++ ++++ RI+ ++GP S P R I+G P A +S A R+
Sbjct: 219 VGLVIGRQGESLRRIEQESQTRIQFINGPESGPQRECRITGS--PSARIS-AKREINRII 275
Query: 149 KRVSGLPENDVDAKASGAAFC-------------SVRLLVPSTQAINLIGKQGSLIKSIQ 195
+ G P + A AA S +++VP +IG+ G I+ +Q
Sbjct: 276 EENGGNPARETGRNARPAAKTVGQQQPALREGEQSSQIMVPDRTVGLIIGRGGETIRDLQ 335
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
E SG V ++ +++ R V + G A A E ++
Sbjct: 336 ERSGCHVNIVGENKS----VNGLRPVNLIGSPAAAAHAKELIM 374
>gi|405976740|gb|EKC41236.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Crassostrea
gigas]
Length = 416
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 73 GWPGHCVFR-MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKE 131
GW C ++V VG+IIG++G+ I ++RAR+ + S D +V I G
Sbjct: 2 GWMRTCSREGILVGSEYVGAIIGKQGQTIHNITSESRARVDIHRRDGLSTDTLVTIKGSP 61
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
E + K + + E++ + G ++++ P++ +IGKQG++I
Sbjct: 62 E----------NCSKACKEIMKIVESEAQSLNKGEP--PLKIICPNSLCGRIIGKQGNVI 109
Query: 192 KSIQENSGASVRVLSA-DEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245
KS E +G + V SA D F+V +R++ + G KA V +RK
Sbjct: 110 KSFMEQTGTHIVVSSATDMNNFFV---DRVITITGSPENTSKAEALVSEKMRKCF 161
>gi|390466103|ref|XP_003733520.1| PREDICTED: far upstream element-binding protein 1 isoform 2
[Callithrix jacchus]
gi|395821884|ref|XP_003784260.1| PREDICTED: far upstream element-binding protein 1 isoform 2
[Otolemur garnettii]
gi|403257698|ref|XP_003921435.1| PREDICTED: far upstream element-binding protein 1 isoform 2
[Saimiri boliviensis boliviensis]
gi|410967580|ref|XP_003990296.1| PREDICTED: far upstream element-binding protein 1 isoform 3 [Felis
catus]
Length = 665
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 128 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 187
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 188 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 239
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 240 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 294
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 204 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 260
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 261 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 316
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 317 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 365
>gi|417403740|gb|JAA48667.1| Putative k-logy type rna binding protein [Desmodus rotundus]
Length = 667
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 13/179 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 128 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 187
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 188 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 239
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASI 262
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 240 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRI 293
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 204 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 260
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 261 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 316
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 317 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 365
>gi|356576359|ref|XP_003556300.1| PREDICTED: RNA-binding protein Nova-1-like [Glycine max]
Length = 337
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 15/166 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGK-EEPEA 135
R +V GS+IG+ G I + ARI++ P DRI+++SG E +
Sbjct: 38 IRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGAINEIQR 97
Query: 136 PVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
V + ++ + +ND + K VRL+VP+ +IGK G I+S
Sbjct: 98 AVELILS---KLLSELHSEDDNDAEPK------TKVRLVVPNGSCGGIIGKGGVTIRSFI 148
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
E+S A +++ D Y +++R+V + G + ++A+E +V L
Sbjct: 149 EDSQAGIKISPQDNN--YYGQNDRLVMLTGTFDEQMRAIELIVSKL 192
>gi|171847306|gb|AAI61696.1| LOC100158419 protein [Xenopus laevis]
Length = 674
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +++ ++++ P+R+V ++G P+A V A
Sbjct: 100 VPDGMVGLIIGRGGEQINKIQQESGCKVQISPDSGGMPERVVSLTG--SPDA-VQNAKML 156
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ R G P + ++G +++P+ +A +IGK G IK +QE +G +
Sbjct: 157 LDDIVARGRGGPPSQFHDSSNGQNGSLQEIMIPAGKAGLIIGKGGETIKQLQERAGVKMI 216
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
++ + + RIV GE KV +A E V+ L++
Sbjct: 217 LIQDGSQNTNMDKPLRIV---GEPFKVQQACEMVMDLLKE 253
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISG 129
VP VG +IGR G++IKK D RI+ + PD+I I G
Sbjct: 281 VPRHSVGVVIGRSGDMIKKIQNDAGVRIQFKQDDGTGPDKIAHIMG 326
>gi|405122865|gb|AFR97631.1| cytoplasmic protein [Cryptococcus neoformans var. grubii H99]
Length = 357
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 17/192 (8%)
Query: 43 NTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKK 102
+ E E S+ P A A P+ PG P R ++ IIGR G + +
Sbjct: 50 DVEMQNEGSPKTAPSSEPTAPAKPD----PG-PQQISMRSLIVTQDASIIIGRGGAHVNE 104
Query: 103 TCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAK 162
E + AR+ V + +P+RI+ +SG P+ A + +R++ P DV +
Sbjct: 105 IREKSSARVTVSESIPGNPERILNVSG------PLDAVAKAFGLIVRRINDEP-FDVPS- 156
Query: 163 ASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222
G+ +++ ++P+++ ++IGK GS IK IQE SGA L+A EA ER++
Sbjct: 157 VPGSRAVTIKFIIPNSRMGSVIGKGGSKIKEIQEASGAR---LNASEA-MLPGSTERVLS 212
Query: 223 MQGEAAKVLKAL 234
+ G A V A+
Sbjct: 213 VSGVADAVHIAV 224
>gi|126314788|ref|XP_001377551.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2,
partial [Monodelphis domestica]
Length = 504
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 19/150 (12%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPD---RIVLISGKE 131
P V + +P VG+IIG+KG IK+ RA IK+ P PD R+V+I+G
Sbjct: 325 PEQEVVYLFIPTQAVGAIIGKKGHHIKQLARFARASIKI--APAEGPDVGERMVIITGP- 381
Query: 132 EPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLI 191
PEA A R+F ++ EN + K +R VPS+ A +IGK G +
Sbjct: 382 -PEA----QFKAQGRIFGKLK--EENFFNPKEEVKLKAHIR--VPSSAAGRVIGKGGKTV 432
Query: 192 KSIQENSGASVRVLSADEAPFYVTEDERIV 221
+Q + A V ++ D+ P E+E ++
Sbjct: 433 NELQNLTSAEV-IVPRDQTP---DENEEVI 458
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 49 ESDSALPQSTGPDAAAVPEEKKWPGWPGHCV-----FRMIVPVLKVGSIIGRKGELIKKT 103
+ D PQ A++ E + PG G R++VP VG+IIG++G IK
Sbjct: 61 DEDGHAPQRFRRGASSSRERGRSPGGSGQAKPPDFPLRILVPTQFVGAIIGKEGLTIKNL 120
Query: 104 CEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKA 163
+ T++++ + +G E + + + + +R+ + + + D +
Sbjct: 121 TKQTQSKVDIHRKEN---------AGASEKPVTIHASPEGSSEACRRILEIMQKEAD-ET 170
Query: 164 SGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEM 223
+++L ++ LIGK+G +K I++++G + + + Y ER + +
Sbjct: 171 KAVEEVPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLTIY--NPERTITV 228
Query: 224 QG 225
+G
Sbjct: 229 KG 230
>gi|365766932|gb|EHN08421.1| Pbp2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 413
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 82/408 (20%), Positives = 167/408 (40%), Gaps = 47/408 (11%)
Query: 24 ATTESPTTESEAPPTI----GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCV 79
+ T +PTT +P T+ G + +E E++ D+ + + P
Sbjct: 9 SITTTPTTVLVSPNTLKRKKGEDTSEEQLEAEIKRVALKDADSHSDNDHDSPDNVPSDVH 68
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM+ V I+G KG I + +T ARI + + P+RIV + G + V+
Sbjct: 69 LRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCD---DVAK 125
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A VR G +N D + S+ LL+P +IGK+GS ++ I++ S
Sbjct: 126 AYGMIVRALLEEHGNEDNGEDIE------ISINLLIPHHLMGCIIGKRGSRLREIEDLSA 179
Query: 200 ASV------------RVLSADEAP-------FYVTEDERIVEMQGEAAKVLKALEAVVGH 240
A + R+L+ + P FY+++ +M+ V +++
Sbjct: 180 AKLFASPNQLLLSNDRILTINGVPDAIHIATFYISQTLLNFQMESPQKNVKRSIYYQPTQ 239
Query: 241 LRKFLVDQGV-LPLFEKTYNASISQERQVETWADKSSLHAATQSAIST-EYTPSTRRESL 298
L+D +F + + ++ + +K+ ++T +++T +YT ++
Sbjct: 240 FNSVLIDHSQPNTIFHQRNHQYHPSDKLLSYKPNKNLPISSTXLSMATPQYTTAS----- 294
Query: 299 FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
+ + + + +++ P +S + L ++ + Q + I + ++I
Sbjct: 295 -VANATAFQPNFVIPNVTVL-DGPVISPAPGNHL------LMNFVQQEIFIDEKFVGNVI 346
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
G G I +++ ++G I +Q+ E + I+GT Q A LI
Sbjct: 347 GKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLI 394
>gi|359319788|ref|XP_003639165.1| PREDICTED: far upstream element-binding protein 1-like [Canis lupus
familiaris]
Length = 663
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 106 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 165
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 166 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 217
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 218 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 272
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 182 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 238
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 239 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 294
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 295 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 343
>gi|281341834|gb|EFB17418.1| hypothetical protein PANDA_012445 [Ailuropoda melanoleuca]
Length = 320
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 147/336 (43%), Gaps = 41/336 (12%)
Query: 95 RKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGL 154
+KGE +KK E++ ARI + +G + P+RI+ ++G +A + F +
Sbjct: 1 QKGESVKKMREESGARINISEG--NCPERIITLAGP----------TNAIFKAFAMIIDK 48
Query: 155 PENDVDAKASGAAFCS-----VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADE 209
E D+ + + + S +RL+VP++Q +LIGK G IK I+E GA V+V + D
Sbjct: 49 LEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE-VGAQVQV-AGDM 106
Query: 210 APFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASI----SQE 265
P ER + + G +++ ++ + + + +P K ++ + Q+
Sbjct: 107 LP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQD 163
Query: 266 RQVETWADKSSLHAATQSAISTEYTPSTRRESLFLER-----EPQLESRYRL----SGIS 316
R T +D +S T S E+ ++ +P L ++L S
Sbjct: 164 R-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFP 222
Query: 317 IYGQDPALSTIRSSA---LGRASGPIVTQITQT--MQIPISYAEDIIGVGGTSIENIRRT 371
+ + S I SS+ G +G + T + + IP IIG G I IR+
Sbjct: 223 MTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQM 282
Query: 372 SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
SGA I + + V I G+++ + LAQ LI
Sbjct: 283 SGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 318
>gi|257206622|emb|CAX82939.1| KH-type splicing regulatory protein (FUSE binding protein 2)
[Schistosoma japonicum]
Length = 535
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IG+ GE I + DT+ ++++ +P+R V ++G + + A
Sbjct: 104 IPDRFVGLVIGKGGEQITQLQNDTQCKVQISQ--AGTPERTVTLTGTPQQ---IDHAKQM 158
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ +R S + ++ ++VP +A +IGK G IK++QE +G +
Sbjct: 159 IGDIIERAGKNGTPTTTTYNSTGSITTIEMMVPGLKAGLVIGKNGETIKNLQEENGVKMV 218
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
++ P T +++ + + GE ++V KA +AV+
Sbjct: 219 LIQQSNNP---TPEDKPLRISGEPSRVEKARQAVL 250
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
M+VP LK G +IG+ GE IK E+ ++ VL ++P D+ + ISG+
Sbjct: 186 IEMMVPGLKAGLVIGKNGETIKNLQEENGVKM-VLIQQSNNPTPEDKPLRISGEPSRVEK 244
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A+ + R G D + + + VP+ +A +IGK G IK I
Sbjct: 245 ARQAVLVLINSRDRPGGSIHYGYDGQETS------QYAVPAEKAGLVIGKGGESIKEICR 298
Query: 197 NSGASVRV 204
SGA V +
Sbjct: 299 VSGAHVEI 306
>gi|312079928|ref|XP_003142383.1| hypothetical protein LOAG_06799 [Loa loa]
Length = 440
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 83/162 (51%), Gaps = 6/162 (3%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAPV 137
++++P VG++IG+ GE ++ ++ R+++ P +RI L+ GK V
Sbjct: 37 KVLIPSAAVGALIGKGGETMRNLKSESGCRLQMSKNQEVYPGTNERICLVKGKIASVLKV 96
Query: 138 SPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQEN 197
S + +R ++V +D+ ++L+VP+T A +IGK G+ IK I+E
Sbjct: 97 SDVILEKIR--EKVDNNTPSDIFDHKGMERKNEMKLVVPNTSAGMVIGKSGARIKEIREQ 154
Query: 198 SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVL-KALEAVV 238
+GA+++V + ERI+ + E +VL AL+ V+
Sbjct: 155 TGANIQVYPKAGSQEAKVSQERIITIAAEQDEVLMDALQRVL 196
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
V++L+PS LIGK G +++++ SG +++ E Y +ERI ++G+ A V
Sbjct: 36 VKVLIPSAAVGALIGKGGETMRNLKSESGCRLQMSKNQEV--YPGTNERICLVKGKIASV 93
Query: 231 LKALEAVVGHLRK 243
LK + ++ +R+
Sbjct: 94 LKVSDVILEKIRE 106
>gi|426215780|ref|XP_004002147.1| PREDICTED: far upstream element-binding protein 1 isoform 2 [Ovis
aries]
Length = 655
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 219 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 273
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 296 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 344
>gi|281349073|gb|EFB24657.1| hypothetical protein PANDA_011323 [Ailuropoda melanoleuca]
Length = 568
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 19 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 78
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 79 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 130
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 131 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 185
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 95 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 151
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 152 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 207
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 208 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 256
>gi|395333911|gb|EJF66288.1| hypothetical protein DICSQDRAFT_159257 [Dichomitus squalens
LYAD-421 SS1]
Length = 405
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 140/349 (40%), Gaps = 69/349 (19%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R ++ IIG+ G + + E + AR+ V + +P+RI+ +SG P VS
Sbjct: 103 MRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERILNVSG---PLDAVSK 159
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A VR R++ P + S A +++ ++P+++ ++IGK G+ IK IQ+ SG
Sbjct: 160 AFGLIVR---RINDEPFDKPSVPGSRA--VTIKFMIPNSRMGSVIGKGGTKIKEIQDASG 214
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
A L+A E ER++ + G A + H+ + + ++ E+
Sbjct: 215 AR---LNASEG-MLPGSTERLLSVSGVADAI---------HIATYYIGNILIEANERM-- 259
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
SS H ST R + R P + S Y + G
Sbjct: 260 --------------PSSNH-------------STYRPTSQSRRPPYMGSSY------VPG 286
Query: 320 QDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ 379
PA + ++ A GP TQ + IP IIG GG I IR S + I +
Sbjct: 287 YAPAAAAAATAHNPYAGGPPSQLQTQQIYIPNDLVGCIIGKGGAKINEIRHMSASQIKIM 346
Query: 380 E-------SRGLP------DEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
E G P E V I G + +Q+A QL+ + K+
Sbjct: 347 EPGAVGVGMNGAPAPAGSEGERLVVITGQPANIQMAVQLLYSRLEQEKQ 395
>gi|83320094|ref|NP_001032742.1| far upstream element-binding protein 1 [Rattus norvegicus]
gi|123780056|sp|Q32PX7.1|FUBP1_RAT RecName: Full=Far upstream element-binding protein 1; Short=FBP;
Short=FUSE-binding protein 1
gi|79160170|gb|AAI07943.1| Far upstream element (FUSE) binding protein 1 [Rattus norvegicus]
Length = 639
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 22/213 (10%)
Query: 60 PDAAAVPEEKKWPGW---PGHCVFRMI------VPVLKVGSIIGRKGELIKKTCEDTRAR 110
PDA VP + G P H R + VP VG IIGR GE I + +++ +
Sbjct: 69 PDAKKVPPQNDSFGAQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCK 128
Query: 111 IKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
I++ P+R +++G E +D V + G D G
Sbjct: 129 IQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGD------GPGNAV 182
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++P+++A +IGK G IK +QE +G V+++ + P D + + + G+ KV
Sbjct: 183 QEIMIPASKAGLVIGKGGETIKQLQERAG--VKMVMIQDGPQNTGAD-KPLRITGDPYKV 239
Query: 231 LKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
+A E V+ +R DQG Y + I
Sbjct: 240 QQAKEMVLELIR----DQGGFREVRNEYGSRIG 268
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 178 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 234
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 235 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 290
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 291 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 339
>gi|380026051|ref|XP_003696775.1| PREDICTED: RNA-binding protein Nova-2-like isoform 2 [Apis florea]
Length = 522
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 13/173 (7%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISG 129
G G +++VP + G+IIG+ G+ I + +DT AR+K+ D + +R+ LI+G
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLP-ENDVD---AKASGAAFCSVRLLVPSTQAINLIG 185
E + MD + + L + VD K + V++LVP++ A +IG
Sbjct: 100 SLEA---IMAVMDFIMDKIREKPDLTLKTTVDFESGKTTAERDKQVKILVPNSTAGMIIG 156
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
K G+ IK I+E G+ V++ + V+ ER + + GE AL ++
Sbjct: 157 KAGNYIKQIKEECGSYVQI---SQKAKDVSLQERCITVIGEKENNRNALMMIL 206
>gi|380026049|ref|XP_003696774.1| PREDICTED: RNA-binding protein Nova-2-like isoform 1 [Apis florea]
Length = 514
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 13/173 (7%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISG 129
G G +++VP + G+IIG+ G+ I + +DT AR+K+ D + +R+ LI+G
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLP-ENDVD---AKASGAAFCSVRLLVPSTQAINLIG 185
E + MD + + L + VD K + V++LVP++ A +IG
Sbjct: 100 SLEA---IMAVMDFIMDKIREKPDLTLKTTVDFESGKTTAERDKQVKILVPNSTAGMIIG 156
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
K G+ IK I+E G+ V++ + V+ ER + + GE AL ++
Sbjct: 157 KAGNYIKQIKEECGSYVQI---SQKAKDVSLQERCITVIGEKENNRNALMMIL 206
>gi|260949329|ref|XP_002618961.1| hypothetical protein CLUG_00120 [Clavispora lusitaniae ATCC 42720]
gi|238846533|gb|EEQ35997.1| hypothetical protein CLUG_00120 [Clavispora lusitaniae ATCC 42720]
Length = 488
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 106/455 (23%), Positives = 178/455 (39%), Gaps = 102/455 (22%)
Query: 22 ETATTESPTTESEAPPTIGSENTEHTTES-DSALPQSTGP---DAAAVPEEKKWPGWPGH 77
E+ +E P ES+ E T HT E+ S+ P S+ DA+ V
Sbjct: 70 ESGQSEEPIPESQ---NHDGEQTSHTAEAIGSSKPISSHKKDDDASTVS----------- 115
Query: 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPV 137
RM PV + +++G+KGE I E RI V + + P+R++ + G E A
Sbjct: 116 --VRMYCPVKEAAAVVGKKGEKITHIREKANVRIYVSENLKNVPERVISVKGSAEDVA-- 171
Query: 138 SPAMDAAVRVFKRVS-GLPENDVDAKAS-GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
R F ++ + E D AS + +++LLVP +IGK GS + I+
Sbjct: 172 --------RAFGLITRAILEEPEDEPASITSKQYNLKLLVPHPMVGYIIGKSGSKFREIE 223
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL---RKFLVDQGV-- 250
ENS A ++ +A++A Y T +R++ + G + A+ + + R L +
Sbjct: 224 ENSAAKLK--AAEQALPYST--DRVLSVTGVGDAIHIAVYYICSVMLAHRDCLKKHKIIY 279
Query: 251 ---------LPLFEKTYNASISQER-----------QVETWADKSSLHAATQS------- 283
LP N SI+ ++ Q++ +L A S
Sbjct: 280 YNPSNFRPQLPAANPIMNMSIAPQQNAVPYMTGNPMQMQQMGPGPNLKDAHGSYSQVPKP 339
Query: 284 -AISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQ 342
+ PS R PQ + I Q A ++ G ++TQ
Sbjct: 340 YNFQMMFQPSAR---------PQFNGPSNMPNTQI--QIGAQNSFTDEHGNTIIGDVITQ 388
Query: 343 I-TQTMQIPISYAED----------IIGVGGTSIENIRRTSGAI-----------ITVQE 380
+ Q P ++ED +IG GG +I+ IR +SG I +
Sbjct: 389 MPVQISSSPDKFSEDVFVANSNIGSVIGKGGNNIKQIRESSGCTYVKIEPDQNQSILLGG 448
Query: 381 SRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
+GL + + + G+ + +Q A LI + ++ KE
Sbjct: 449 GKGLTNIRKLTLTGSYNSIQTAIYLINQRISADKE 483
>gi|119626763|gb|EAX06358.1| far upstream element (FUSE) binding protein 1, isoform CRA_c [Homo
sapiens]
Length = 656
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 219 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 273
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T ERI ++ G + A E + LR
Sbjct: 296 EMIKKIQNDAGVRIQFKPDDG-----TTPERIAQITGPPDRCQHAAEIITDLLR 344
>gi|71997385|ref|NP_001023001.1| Protein ZK418.9, isoform b [Caenorhabditis elegans]
gi|373218579|emb|CCD61630.1| Protein ZK418.9, isoform b [Caenorhabditis elegans]
Length = 510
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEEPEAPVSPA 140
+IVP L G IIG+ GE+IK+ +T +I+ D +S DRI +I G + +
Sbjct: 197 VIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGTRDQIYRATER 256
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ V + +G P++ A + VP+ + +IGK G IK I+ +GA
Sbjct: 257 ITEIVNRAIKNNGAPQDRGSAGTVLPGQSIFYMHVPAGKCGLVIGKGGENIKQIERETGA 316
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+ + A E EDE++ E++G ++ A V
Sbjct: 317 TCGLAPAAEQK---NEDEKVFEIKGSQLQIHHASHLV 350
>gi|440898065|gb|ELR49638.1| Far upstream element-binding protein 1 [Bos grunniens mutus]
Length = 675
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 138 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 197
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 198 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 249
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 250 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 304
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 214 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 270
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 271 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 326
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 327 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 375
>gi|328784994|ref|XP_003250531.1| PREDICTED: RNA-binding protein Nova-2-like [Apis mellifera]
Length = 514
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 13/173 (7%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISG 129
G G +++VP + G+IIG+ G+ I + +DT AR+K+ D + +R+ LI+G
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLP-ENDVD---AKASGAAFCSVRLLVPSTQAINLIG 185
E + MD + + L + VD K + V++LVP++ A +IG
Sbjct: 100 SLEA---IMAVMDFIMDKIREKPDLTLKTTVDFESGKTTAERDKQVKILVPNSTAGMIIG 156
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
K G+ IK I+E G+ V++ + V+ ER + + GE AL ++
Sbjct: 157 KAGNYIKQIKEECGSYVQI---SQKAKDVSLQERCITVIGEKENNRNALMMIL 206
>gi|156372967|ref|XP_001629306.1| predicted protein [Nematostella vectensis]
gi|156216303|gb|EDO37243.1| predicted protein [Nematostella vectensis]
Length = 419
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 23/159 (14%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R+++ G IIG+ G I++ + A + V D +S +R++ I+ AP
Sbjct: 55 LRILIQSKDAGGIIGKGGTNIRRLRTEYNAVVNVPD--TNSNERVLTIT------APRQS 106
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A+D V ++ + +++LV +Q ++IG+ G IK I+E SG
Sbjct: 107 ALDILAEVVPKIGEVQYGH-----------EIQMLVQRSQVGSIIGRAGYKIKEIREGSG 155
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
A+V+V AD P ER+V M G A ++K +E V+
Sbjct: 156 ANVKVF-ADCLP---NSTERVVTMSGSAETIVKCVENVL 190
>gi|426227471|ref|XP_004007841.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
isoform 1 [Ovis aries]
Length = 580
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P ++GP +A P ++ + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 384 PPTSGPPSAMTPPYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI- 442
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P +PD R+V+I+G PEA A R++ ++ EN V K +
Sbjct: 443 -APAEAPDAKVRMVIITGP--PEA----QFKAQGRIYGKIK--EENFVSPKEEVKLEAHI 493
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE 226
R VPS A +IGK G + +Q S A V V+ D+ P D+ +V++ G
Sbjct: 494 R--VPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPD--ENDQVVVKITGH 543
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL--DGPVSSPDRIVLISGKEE 132
P R++VP VG+IIG++G I+ + T+++I V + ++ I ++S E
Sbjct: 193 PCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPE- 251
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
AA + + D+ +++L + LIGK+G +K
Sbjct: 252 -------GTSAACKSILEIMHKEAQDIKFTEE----IPLKILAHNNFVGRLIGKEGRNLK 300
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
I++++ + + E Y ER + ++G KA E ++ +R+
Sbjct: 301 KIEQDTDTKITISPLQELTLY--NPERTITVKGNVETCAKAEEEIMKKIRE 349
>gi|410033139|ref|XP_003949493.1| PREDICTED: far upstream element-binding protein 1 [Pan troglodytes]
gi|426330100|ref|XP_004026062.1| PREDICTED: far upstream element-binding protein 1 isoform 3
[Gorilla gorilla gorilla]
Length = 655
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 219 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 273
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T ERI ++ G + A E + LR
Sbjct: 296 EMIKKIQNDAGVRIQFKPDDG-----TTPERIAQITGPPDRCQHAAEIITDLLR 344
>gi|395536741|ref|XP_003770370.1| PREDICTED: far upstream element-binding protein 1 [Sarcophilus
harrisii]
Length = 621
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 84 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 143
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 144 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 195
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 196 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 250
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 160 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 216
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 217 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 272
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 273 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 321
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IGR GE+IKK D RI+ ++PDRI I+G P A +
Sbjct: 259 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITG---PPDRCQHAAEI 315
Query: 144 AVRVFKRVSGLPENDVDAKASG-------------AAFCSVRLLVPSTQAINLIGKQGSL 190
+ + V G +VP+ + +IGK G
Sbjct: 316 ITDLLRSVQAGNPGGPGPGGRGRGRGQGSWSMGPPGGLQEFNFIVPTGKTGLIIGKGGET 375
Query: 191 IKSIQENSGASVRV 204
IKSI + SGA + +
Sbjct: 376 IKSISQQSGARIEL 389
>gi|410967578|ref|XP_003990295.1| PREDICTED: far upstream element-binding protein 1 isoform 2 [Felis
catus]
Length = 655
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 219 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 273
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 296 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 344
>gi|401626761|gb|EJS44683.1| pbp2p [Saccharomyces arboricola H-6]
Length = 416
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 161/411 (39%), Gaps = 47/411 (11%)
Query: 21 PETATTESPTTESEAPPTIGSENTEHTTES--DSALPQSTGPDAAAVP--EEKKWPGWPG 76
P TAT T +P + + E T+E ++ + + D P E P
Sbjct: 9 PLTATPAVAATVLVSPNALKRKKVEDTSEEQLEAEIKRVALDDTEDHPDNEHDSTDHVPS 68
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAP 136
H RM+ V I+G KG I K +T ARI V + P+RIV + G +
Sbjct: 69 HVHLRMLCLVKHASLIVGHKGATISKIKSETSARINVSNNIRGVPERIVYVRGTCD---D 125
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
V+ A VR + + D + ++ LL+P +IGK+GS ++ I++
Sbjct: 126 VAKAYSMIVRALLEEHENEDQEEDIEV------TINLLIPHHLMGCIIGKRGSRLREIED 179
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPL--- 253
S A L A ++ D RI+ + G + H+ F + Q +L
Sbjct: 180 LSAAK---LFASPNQLLLSND-RILTISGVPDAI---------HIATFYIGQTLLNFQME 226
Query: 254 --FEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRR-----------ESLFL 300
+K + Q Q + S A + +Y P+ ++ S FL
Sbjct: 227 SPQKKLKRSIFYQPTQFNSVLIDHSQPNAILHQRNHQYHPNDKQLSGRPNRKFSVSSTFL 286
Query: 301 EREPQLESRYRLSGISIYGQDPALSTIR---SSAL--GRASGPIVTQITQTMQIPISYAE 355
P + ++ + + + + +R S + G ++ + + Q + I ++
Sbjct: 287 NMAPPQYTTASVANATAFQPNFVIPNVRILDGSVVNSGISNHLSMNLVQQEIFIDENFVG 346
Query: 356 DIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
++IG G I +++ ++G I +Q+ E + I+GT Q A LI
Sbjct: 347 NVIGKDGKHINSVKESTGCSIIIQDPVECASERRLSIRGTFMASQAAIMLI 397
>gi|338725292|ref|XP_001496721.3| PREDICTED: far upstream element-binding protein 1 [Equus caballus]
Length = 644
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 106 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 165
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 166 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 217
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 218 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 272
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 182 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 238
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 239 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 294
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 295 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 343
>gi|417403610|gb|JAA48604.1| Putative k-logy type rna binding protein [Desmodus rotundus]
Length = 647
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 219 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 273
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 296 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 344
>gi|383863655|ref|XP_003707295.1| PREDICTED: RNA-binding protein Nova-2-like isoform 2 [Megachile
rotundata]
Length = 535
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 13/169 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISGKEEPEAP 136
+++VP + G+IIG+ G+ I + +DT A++K+ D + +R+ LI+G E
Sbjct: 68 LKVLVPGVAAGAIIGKGGDTIAQLQKDTGAKVKISKSHDFYPGTTERVCLITGSLEA--- 124
Query: 137 VSPAMDAAVRVFKRVSGLP-ENDVDA---KASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
+ MD + + L + VD+ K + V++LVP++ A +IGK G+ IK
Sbjct: 125 IMAVMDFIMDKIREKPDLTLKTTVDSESGKTTAERDKQVKILVPNSTAGMIIGKAGNYIK 184
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
I+E SG+ V++ + V+ ER + + GE AL ++ +
Sbjct: 185 QIKEESGSYVQI---SQKAKDVSLQERCITVIGEKENNRNALMMILAKV 230
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++LVP A +IGK G I +Q+++GA V++ + + FY ER+ + G +
Sbjct: 68 LKVLVPGVAAGAIIGKGGDTIAQLQKDTGAKVKISKSHD--FYPGTTERVCLITGSLEAI 125
Query: 231 LKALEAVVGHLRK 243
+ ++ ++ +R+
Sbjct: 126 MAVMDFIMDKIRE 138
>gi|426227473|ref|XP_004007842.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
isoform 2 [Ovis aries]
Length = 441
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P ++GP +A P ++ + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 245 PPTSGPPSAMTPPYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI- 303
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P +PD R+V+I+G PEA A R++ ++ EN V K +
Sbjct: 304 -APAEAPDAKVRMVIITGP--PEA----QFKAQGRIYGKIK--EENFVSPKEEVKLEAHI 354
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE 226
R VPS A +IGK G + +Q S A V V+ D+ P D+ +V++ G
Sbjct: 355 R--VPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPD--ENDQVVVKITGH 404
>gi|341893250|gb|EGT49185.1| hypothetical protein CAEBREN_32371 [Caenorhabditis brenneri]
Length = 430
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 84/174 (48%), Gaps = 7/174 (4%)
Query: 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEP 133
H ++++P VG+IIG+ GE ++ D R+++ + P +RI L+ G+
Sbjct: 42 HLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLVKGRLNN 101
Query: 134 EAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKS 193
V ++ +R ++ + ND + + +++++P+T A +IGK G+ IK
Sbjct: 102 IMAVIESIQDKIR--EKCADQAGNDAFDHKNTSRGSEIKIVMPNTSAGMVIGKSGANIKD 159
Query: 194 IQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD 247
I+E+ ++V + T ER+V + E ++ L L+A L K D
Sbjct: 160 IREHFSCQIQVYPKAGSVEAKTSLERVVTVAHEESQAL--LQAASRVLEKVASD 211
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ 224
G S+++L+PS +IGK G +++++ ++ + RV + + Y ERI ++
Sbjct: 39 GGDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDN--NCRVQMSKNSETYPGTSERICLVK 96
Query: 225 GEAAKVLKALEAVVGHLRKFLVDQGVLPLFE 255
G ++ +E++ +R+ DQ F+
Sbjct: 97 GRLNNIMAVIESIQDKIREKCADQAGNDAFD 127
>gi|340714094|ref|XP_003395567.1| PREDICTED: RNA-binding protein Nova-2-like [Bombus terrestris]
gi|350427987|ref|XP_003494948.1| PREDICTED: RNA-binding protein Nova-2-like [Bombus impatiens]
Length = 514
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 13/173 (7%)
Query: 73 GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV---LDGPVSSPDRIVLISG 129
G G +++VP + G+IIG+ G+ I + +DT AR+K+ D + +R+ LI+G
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 130 KEEPEAPVSPAMDAAVRVFKRVSGLP-ENDVD---AKASGAAFCSVRLLVPSTQAINLIG 185
E + MD + + L + VD K + V++LVP++ A +IG
Sbjct: 100 SLEA---IMAVMDFIMDKIREKPDLTLKTTVDFESGKTTAERDKQVKILVPNSTAGMIIG 156
Query: 186 KQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
K G+ IK I+E G+ V++ + V+ ER + + GE AL ++
Sbjct: 157 KAGNYIKQIKEECGSYVQI---SQKAKDVSLQERCITVIGEKENNRNALMMIL 206
>gi|226477992|emb|CAX72689.1| KH-type splicing regulatory protein (FUSE binding protein 2)
[Schistosoma japonicum]
Length = 535
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IG+ GE I + DT+ ++++ +P+R V ++G + + A
Sbjct: 104 IPDRFVGLVIGKGGEQITQLQNDTQCKVQISQ--AGTPERTVTLTGTPQQ---IDHAKQM 158
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ +R S + ++ ++VP +A +IGK G IK++QE +G +
Sbjct: 159 IGDIIERAGKNGTPTTTTYNSTGSITTIEMMVPGLKAGLVIGKNGETIKNLQEENGVKMV 218
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
++ P T +++ + + GE ++V KA +AV+
Sbjct: 219 LIQQSNNP---TPEDKPLRISGEPSRVEKARQAVL 250
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
M+VP LK G +IG+ GE IK E+ ++ VL ++P D+ + ISG+
Sbjct: 186 IEMMVPGLKAGLVIGKNGETIKNLQEENGVKM-VLIQQSNNPTPEDKPLRISGEPSRVEK 244
Query: 137 VSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A+ + R G D + + + VP+ +A +IGK G IK I
Sbjct: 245 ARQAVLVLINSRDRPGGSIHYGYDGQETS------QYAVPAEKAGLVIGKGGESIKEICR 298
Query: 197 NSGASVRV 204
SGA V +
Sbjct: 299 VSGAHVEI 306
>gi|146336943|gb|ABQ23585.1| putative KH-domain containing protein [Medicago truncatula]
Length = 334
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 81 RMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAPV 137
R +V GS+IG+ G I + ARI++ P DRI+++SG V
Sbjct: 39 RFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAINE---V 95
Query: 138 SPAMDAAV-RVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQE 196
A++ + ++ + +NDV+ K VRL+VP+ +IGK G+ I+S E
Sbjct: 96 LRAVELILSKLLSELHSEDDNDVEPK------TKVRLIVPNGSCGGIIGKGGATIRSFIE 149
Query: 197 NSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
S A +++ D + Y +++RIV + G + ++ ++ +V L
Sbjct: 150 ESQAGIKISPQDNS--YYGQNDRIVTVTGTLDEQMRGIDLIVSKL 192
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
VR LV ++ A ++IGK GS I Q SGA +++ +E F+ +RI+ + G +V
Sbjct: 38 VRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNE--FFPGTTDRIIMVSGAINEV 95
Query: 231 LKALEAVVGHL 241
L+A+E ++ L
Sbjct: 96 LRAVELILSKL 106
>gi|395839831|ref|XP_003792779.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 4 [Otolemur garnettii]
Length = 574
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 52 SALPQSTGPDAAAVPEEKKWP-GWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRAR 110
S LP +GP A P P +P + + +P VG+IIG+KG IK+ A
Sbjct: 377 SVLPPPSGPRGAP-PAAPYHPFAYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGAS 435
Query: 111 IKVLDGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAA 167
IK+ P PD R+V+I+G PEA A R+F ++ EN + K
Sbjct: 436 IKI--APAEGPDVSERMVIITGP--PEA----QFKAQGRIFGKLK--EENFFNPKEEVKL 485
Query: 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+R VPS+ A +IGK G + +Q + A V ++ D+ P E+E ++
Sbjct: 486 EAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 533
>gi|67971394|dbj|BAE02039.1| unnamed protein product [Macaca fascicularis]
Length = 316
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 20/170 (11%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P ++GP +A P ++ V + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 121 PPTSGPPSAMTPPYPQFEQSETETV-HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI- 178
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P +PD R+V+I+G PEA A R++ ++ EN V K +
Sbjct: 179 -APAEAPDAKVRMVIITGP--PEA----QFKAQGRIYGKIKE--ENFVSPKEEVKLEAHI 229
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
R VPS A +IGK G + +Q S A V V+ D+ P E++++V
Sbjct: 230 R--VPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTP---DENDQVV 273
>gi|256078999|ref|XP_002575779.1| far upstream (fuse) binding protein [Schistosoma mansoni]
gi|360043990|emb|CCD81536.1| putative far upstream (fuse) binding protein [Schistosoma mansoni]
Length = 334
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IG+ GE I + DT+ ++++ +P+R V ++G + + A
Sbjct: 105 IPDRYVGLVIGKGGEQITQLQNDTQCKVQISQ--AGTPERTVTLTGTPQQ---IDHAKQM 159
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ +R A S + ++ ++VP +A +IGK G IK++QE +G +
Sbjct: 160 IGDIIERAGKNGTPTTPAYNSTGSITTIEMMVPGLKAGLVIGKNGETIKNLQEENGVKMV 219
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
++ P T +++ + + GE A+V KA +AV+
Sbjct: 220 LIQQSNNP---TPEDKPLRISGEPARVEKARQAVL 251
>gi|426199945|gb|EKV49869.1| hypothetical protein AGABI2DRAFT_63586 [Agaricus bisporus var.
bisporus H97]
Length = 365
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 138/347 (39%), Gaps = 72/347 (20%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R ++ IIG+ G + + E + AR+ V + +P+RI+ +SG P VS
Sbjct: 66 MRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERILNVSG---PLDAVSK 122
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A VR R++ P DV + G+ +++ ++P+++ ++IGK GS IK IQ+ SG
Sbjct: 123 AFGLIVR---RINDEPF-DVPS-VPGSRAVTIKFMIPNSRMGSVIGKGGSKIKEIQDASG 177
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
A L+A E ER++ + G V A+ ++ L++
Sbjct: 178 AK---LNASEG-MLPGSTERVLSVAG----VADAIHIATYYIGTILIE------------ 217
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
+QER T + ST R S R Q + G S +
Sbjct: 218 ---AQERMPST-------------------SNSTYRPSSQPRRPTQGGGSSYVPGYSHH- 254
Query: 320 QDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ 379
+ G P TQ + IP IIG GG+ I IR S + I +
Sbjct: 255 ----------APYGPPHNPPQQLQTQQIYIPNDLVGCIIGKGGSKINEIRHMSASQIKIM 304
Query: 380 E-------SRGLP----DEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
E G P E V I G + +Q+A QL+ + K+
Sbjct: 305 EPGATGLGPNGAPGGSEGERLVVITGQPANIQMAVQLLYHRLEQEKQ 351
>gi|409082121|gb|EKM82479.1| hypothetical protein AGABI1DRAFT_33710 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 365
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 138/347 (39%), Gaps = 72/347 (20%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
R ++ IIG+ G + + E + AR+ V + +P+RI+ +SG P VS
Sbjct: 66 MRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERILNVSG---PLDAVSK 122
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A VR R++ P DV + G+ +++ ++P+++ ++IGK GS IK IQ+ SG
Sbjct: 123 AFGLIVR---RINDEPF-DVPS-VPGSRAVTIKFMIPNSRMGSVIGKGGSKIKEIQDASG 177
Query: 200 ASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYN 259
A L+A E ER++ + G V A+ ++ L++
Sbjct: 178 AK---LNASEG-MLPGSTERVLSVAG----VADAIHIATYYIGTILIE------------ 217
Query: 260 ASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYG 319
+QER T + ST R S R Q + G S +
Sbjct: 218 ---AQERMPST-------------------SNSTYRPSSQPRRPTQGGGSSYVPGYSHH- 254
Query: 320 QDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQ 379
+ G P TQ + IP IIG GG+ I IR S + I +
Sbjct: 255 ----------APYGPPHNPPQQLQTQQIYIPNDLVGCIIGKGGSKINEIRHMSASQIKIM 304
Query: 380 E-------SRGLP----DEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415
E G P E V I G + +Q+A QL+ + K+
Sbjct: 305 EPGATGLGPNGAPGGSEGERLVVITGQPANIQMAVQLLYHRLEQEKQ 351
>gi|300796214|ref|NP_001179217.1| insulin-like growth factor 2 mRNA-binding protein 3 [Bos taurus]
gi|296488613|tpg|DAA30726.1| TPA: insulin-like growth factor 2 mRNA binding protein 3 [Bos
taurus]
Length = 580
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 55 PQSTGPDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL 114
P ++GP +A P ++ + +P L VG+IIG++G+ IK+ A IK+
Sbjct: 384 PPTSGPPSAITPPYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI- 442
Query: 115 DGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSV 171
P +PD R+V+I+G PEA A R++ ++ EN V K +
Sbjct: 443 -APAEAPDAKVRMVIITGP--PEA----QFKAQGRIYGKIK--EENFVSPKEEVKLEAHI 493
Query: 172 RLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE 226
R VPS A +IGK G + +Q S A V V+ D+ P D+ +V++ G
Sbjct: 494 R--VPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPD--ENDQVVVKITGH 543
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL--DGPVSSPDRIVLISGKEE 132
P R++VP VG+IIG++G I+ + T+++I V + ++ I ++S E
Sbjct: 193 PCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPE- 251
Query: 133 PEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIK 192
AA + + D+ +++L + LIGK+G +K
Sbjct: 252 -------GTSAACKSILEIMHKEAQDIKFTEE----IPLKILAHNNFVGRLIGKEGRNLK 300
Query: 193 SIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243
I++++ + + E Y ER + ++G KA E ++ +R+
Sbjct: 301 KIEQDTDTKITISPLQELTLY--NPERTITVKGNVETCAKAEEEIMKKIRE 349
>gi|84662730|ref|NP_476513.2| far upstream element-binding protein 1 [Mus musculus]
gi|74144333|dbj|BAE36030.1| unnamed protein product [Mus musculus]
Length = 642
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 22/213 (10%)
Query: 60 PDAAAVPEEKKWPGW---PGHCVFRMI------VPVLKVGSIIGRKGELIKKTCEDTRAR 110
PDA VP + G P H R + VP VG IIGR GE I + +++ +
Sbjct: 69 PDAKKVPPQNDSFGAQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCK 128
Query: 111 IKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCS 170
I++ P+R +++G E +D V + G D G
Sbjct: 129 IQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGD------GPGNAV 182
Query: 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKV 230
+++P+++A +IGK G IK +QE +G V+++ + P D + + + G+ KV
Sbjct: 183 QEIMIPASKAGLVIGKGGETIKQLQERAG--VKMVMIQDGPQNTGAD-KPLRITGDPYKV 239
Query: 231 LKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
+A E V+ +R DQG Y + I
Sbjct: 240 QQAKEMVLELIR----DQGGFREVRNEYGSRIG 268
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 178 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 234
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 235 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 290
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 291 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 339
>gi|449508372|ref|XP_002188229.2| PREDICTED: far upstream element-binding protein 1 [Taeniopygia
guttata]
Length = 592
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 54 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 113
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 114 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 165
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 166 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 220
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 130 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 186
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 187 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 242
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 243 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 291
>gi|301773894|ref|XP_002922363.1| PREDICTED: far upstream element-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 646
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 106 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 165
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 166 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 217
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 218 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 272
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 182 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 238
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 239 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 294
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 295 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 343
>gi|256078993|ref|XP_002575776.1| far upstream (fuse) binding protein [Schistosoma mansoni]
gi|360043993|emb|CCD81539.1| putative far upstream (fuse) binding protein [Schistosoma mansoni]
Length = 356
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
+P VG +IG+ GE I + DT+ ++++ +P+R V ++G + + A
Sbjct: 105 IPDRYVGLVIGKGGEQITQLQNDTQCKVQISQ--AGTPERTVTLTGTPQQ---IDHAKQM 159
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
+ +R A S + ++ ++VP +A +IGK G IK++QE +G +
Sbjct: 160 IGDIIERAGKNGTPTTPAYNSTGSITTIEMMVPGLKAGLVIGKNGETIKNLQEENGVKMV 219
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238
++ P T +++ + + GE A+V KA +AV+
Sbjct: 220 LIQQSNNP---TPEDKPLRISGEPARVEKARQAVL 251
>gi|417403606|gb|JAA48602.1| Putative k-logy type rna binding protein [Desmodus rotundus]
Length = 646
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 219 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 273
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 296 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 344
>gi|17402900|ref|NP_003893.2| far upstream element-binding protein 1 [Homo sapiens]
gi|332809274|ref|XP_513511.3| PREDICTED: far upstream element-binding protein 1 isoform 2 [Pan
troglodytes]
gi|397472594|ref|XP_003807825.1| PREDICTED: far upstream element-binding protein 1 isoform 1 [Pan
paniscus]
gi|426330096|ref|XP_004026060.1| PREDICTED: far upstream element-binding protein 1 isoform 1
[Gorilla gorilla gorilla]
gi|116241370|sp|Q96AE4.3|FUBP1_HUMAN RecName: Full=Far upstream element-binding protein 1; Short=FBP;
Short=FUSE-binding protein 1; AltName: Full=DNA helicase
V; Short=hDH V
gi|17158056|gb|AAA17976.2|AAA17976 FUSE binding protein [Homo sapiens]
gi|119626761|gb|EAX06356.1| far upstream element (FUSE) binding protein 1, isoform CRA_a [Homo
sapiens]
gi|380817628|gb|AFE80688.1| far upstream element-binding protein 1 [Macaca mulatta]
gi|410225756|gb|JAA10097.1| far upstream element (FUSE) binding protein 1 [Pan troglodytes]
gi|410258414|gb|JAA17174.1| far upstream element (FUSE) binding protein 1 [Pan troglodytes]
gi|410301636|gb|JAA29418.1| far upstream element (FUSE) binding protein 1 [Pan troglodytes]
gi|410331317|gb|JAA34605.1| far upstream element (FUSE) binding protein 1 [Pan troglodytes]
Length = 644
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 219 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 273
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T ERI ++ G + A E + LR
Sbjct: 296 EMIKKIQNDAGVRIQFKPDDG-----TTPERIAQITGPPDRCQHAAEIITDLLR 344
>gi|358056167|dbj|GAA97907.1| hypothetical protein E5Q_04587 [Mixia osmundae IAM 14324]
Length = 531
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 99/218 (45%), Gaps = 38/218 (17%)
Query: 47 TTESDS--ALPQSTGPDAAAVPEEKKWPGWPGHC-----VFRMIVPVLKVGSIIGRKGEL 99
TTE DS P+ P A + + P PG + R +V + G +IGR+G
Sbjct: 107 TTEKDSPAVQPKEDAPPQAPIRSQAASP--PGQAEAPTLIMRALVSSREAGIVIGRQG-- 162
Query: 100 IKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRV-------- 151
K D R + +V G VS L+ G E V+ + R F +
Sbjct: 163 --KNVADIREKAQVKAG-VSK-----LVPGVSERVLTVTGQISGVARAFGLICQTIMDNS 214
Query: 152 SGLPENDVDAKASG--AAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADE 209
SG+P ND + +G + ++RLL+ S Q +IGK G+ IKSIQ+ SG R+ ++ E
Sbjct: 215 SGIP-NDSPSTYTGLSGSTLTLRLLISSAQMGGVIGKAGTKIKSIQQTSG--TRMAASKE 271
Query: 210 APFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD 247
ER+VE+ G +V KA V + K LV+
Sbjct: 272 --LLPQSTERLVEISGRPEQVEKA----VAEIAKALVE 303
>gi|311259162|ref|XP_003127965.1| PREDICTED: far upstream element-binding protein 1 [Sus scrofa]
gi|426215778|ref|XP_004002146.1| PREDICTED: far upstream element-binding protein 1 isoform 1 [Ovis
aries]
Length = 644
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 219 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 273
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 296 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 344
>gi|390466101|ref|XP_002751042.2| PREDICTED: far upstream element-binding protein 1 isoform 1
[Callithrix jacchus]
gi|395821882|ref|XP_003784259.1| PREDICTED: far upstream element-binding protein 1 isoform 1
[Otolemur garnettii]
gi|403257696|ref|XP_003921434.1| PREDICTED: far upstream element-binding protein 1 isoform 1
[Saimiri boliviensis boliviensis]
gi|410967576|ref|XP_003990294.1| PREDICTED: far upstream element-binding protein 1 isoform 1 [Felis
catus]
Length = 644
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 167 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 218
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 219 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 273
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 239
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 240 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 295
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 296 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 344
>gi|398365639|ref|NP_009792.3| Pbp2p [Saccharomyces cerevisiae S288c]
gi|586350|sp|P38151.1|PBP2_YEAST RecName: Full=PAB1-binding protein 2
gi|536633|emb|CAA85196.1| unnamed protein product [Saccharomyces cerevisiae]
gi|151946618|gb|EDN64840.1| pbp1p binding protein [Saccharomyces cerevisiae YJM789]
gi|190408618|gb|EDV11883.1| PAB1-binding protein 2 [Saccharomyces cerevisiae RM11-1a]
gi|207347516|gb|EDZ73659.1| YBR233Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272922|gb|EEU07890.1| Pbp2p [Saccharomyces cerevisiae JAY291]
gi|285810563|tpg|DAA07348.1| TPA: Pbp2p [Saccharomyces cerevisiae S288c]
gi|323310022|gb|EGA63217.1| Pbp2p [Saccharomyces cerevisiae FostersO]
gi|323334658|gb|EGA76032.1| Pbp2p [Saccharomyces cerevisiae AWRI796]
gi|323338741|gb|EGA79957.1| Pbp2p [Saccharomyces cerevisiae Vin13]
gi|323349811|gb|EGA84026.1| Pbp2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323356159|gb|EGA87964.1| Pbp2p [Saccharomyces cerevisiae VL3]
gi|392301080|gb|EIW12169.1| Pbp2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 413
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 82/408 (20%), Positives = 167/408 (40%), Gaps = 47/408 (11%)
Query: 24 ATTESPTTESEAPPTI----GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCV 79
+ T +PTT +P T+ G + +E E++ D+ + + P
Sbjct: 9 SITTTPTTVLVSPNTLKRKKGEDTSEEQLEAEIKRVALKDADSHSDNDHDSPDNVPSDVH 68
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM+ V I+G KG I + +T ARI + + P+RIV + G + V+
Sbjct: 69 LRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCD---DVAK 125
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A VR G +N D + S+ LL+P +IGK+GS ++ I++ S
Sbjct: 126 AYGMIVRALLEEHGNEDNGEDIE------ISINLLIPHHLMGCIIGKRGSRLREIEDLSA 179
Query: 200 ASV------------RVLSADEAP-------FYVTEDERIVEMQGEAAKVLKALEAVVGH 240
A + R+L+ + P FY+++ +M+ V +++
Sbjct: 180 AKLFASPNQLLLSNDRILTINGVPDAIHIATFYISQTLLNFQMESPQKNVKRSIYYQPTQ 239
Query: 241 LRKFLVDQGV-LPLFEKTYNASISQERQVETWADKSSLHAATQSAIST-EYTPSTRRESL 298
L+D +F + + ++ + +K+ ++T +++T +YT ++
Sbjct: 240 FNSVLIDHSQPNTIFHQRNHQYHPSDKLLSYKPNKNLPISSTLLSMATPQYTTAS----- 294
Query: 299 FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
+ + + + +++ P +S + L ++ + Q + I + ++I
Sbjct: 295 -VANATAFQPNFVIPNVTVL-DGPVISPAPGNHL------LMNFVQQEIFIDEKFVGNVI 346
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
G G I +++ ++G I +Q+ E + I+GT Q A LI
Sbjct: 347 GKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLI 394
>gi|344278782|ref|XP_003411171.1| PREDICTED: far upstream element-binding protein 1 [Loxodonta
africana]
Length = 642
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 105 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 164
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 165 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 216
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 217 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 271
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 181 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 237
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 238 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 293
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 294 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 342
>gi|194382840|dbj|BAG64590.1| unnamed protein product [Homo sapiens]
Length = 629
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 106 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 165
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 166 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 217
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 218 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 272
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 182 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 238
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 239 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 294
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T ERI ++ G + A E + LR
Sbjct: 295 EMIKKIQNDAGVRIQFKPDDG-----TTPERIAQITGPPDRCQHAAEIITDLLR 343
>gi|116003917|ref|NP_001070314.1| far upstream element-binding protein 1 [Bos taurus]
gi|115305288|gb|AAI23717.1| Far upstream element (FUSE) binding protein 1 [Bos taurus]
Length = 643
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 106 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 165
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 166 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 217
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 218 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 272
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 182 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 238
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 239 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 294
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 295 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 343
>gi|383422519|gb|AFH34473.1| far upstream element-binding protein 1 [Macaca mulatta]
Length = 643
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 106 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 165
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 166 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 217
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 218 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 272
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 182 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 238
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 239 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 294
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T ERI ++ G + A E + LR
Sbjct: 295 EMIKKIQNDAGVRIQFKPDDG-----TTPERIAQITGPPDRCQHAAEIITDLLR 343
>gi|341896366|gb|EGT52301.1| hypothetical protein CAEBREN_06932 [Caenorhabditis brenneri]
Length = 538
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 18/166 (10%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEEPEAPVSPA 140
+IVP L G IIG+ GE+IK+ ++T +I+ D +S DRI +I G E + A
Sbjct: 233 VIVPRLSAGMIIGKGGEMIKRLAQETGTKIQFKPDSDPNSEDRIAVIVGSRE---QIYRA 289
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + + + N V+ + L VP+++ +IGK G IK I+ ++GA
Sbjct: 290 TERITEIVNK--AIKNNGVNPNGQQIFY----LHVPASKCGLVIGKGGENIKQIERDTGA 343
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246
+ + E +DE++ E++G ++ A HL K V
Sbjct: 344 TCGLAGPAEQK---NDDEKVFEIKGTQFQIHHA-----AHLVKIKV 381
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 142/342 (41%), Gaps = 41/342 (11%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG +IG+ G I+ + + R++ +D S D I + + P+ V+ A
Sbjct: 60 VPEKMVGLVIGKGGTEIRLIQQTSACRVQ-MDADDQSNDGIRNCTIEGTPDQ-VAIAKQM 117
Query: 144 AVRVFKRVSGL-PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASV 202
+V R G+ P D + + +L+PS + +IGK G I+++QE SG +
Sbjct: 118 ITQVINRNQGIVPTESTDDE------VTEDILIPSDKIGLVIGKGGETIRTVQEQSG--L 169
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASI 262
R + + T + + M G V A +A+V ++ + QG + + +K+ ++
Sbjct: 170 RTCNVVQDSTSATGQPKPLRMSGTPTAVETA-KALVTNIMNNI--QGNISMLQKSLHSDA 226
Query: 263 SQER-----------QVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYR 311
R + + A ++ ++ P + +P E R
Sbjct: 227 YPARGEVIVPRLSAGMIIGKGGEMIKRLAQETGTKIQFKPDS---------DPNSEDRIA 277
Query: 312 L---SGISIYGQDPALSTIRSSAL-GRASGPIVTQITQTMQIPISYAEDIIGVGGTSIEN 367
+ S IY ++ I + A+ P QI + +P S +IG GG +I+
Sbjct: 278 VIVGSREQIYRATERITEIVNKAIKNNGVNPNGQQIF-YLHVPASKCGLVIGKGGENIKQ 336
Query: 368 IRRTSGAIITVQ--ESRGLPDEITVEIKGTSSQVQLAQQLIQ 407
I R +GA + + DE EIKGT Q+ A L++
Sbjct: 337 IERDTGATCGLAGPAEQKNDDEKVFEIKGTQFQIHHAAHLVK 378
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 6/178 (3%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRAR-IKVLDGPVSSPDRIVLISGKEEPEAPVSPA 140
+++P K+G +IG+ GE I+ E + R V+ S+ + + P A V A
Sbjct: 142 ILIPSDKIGLVIGKGGETIRTVQEQSGLRTCNVVQDSTSATGQPKPLRMSGTPTA-VETA 200
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ + G + S A ++VP A +IGK G +IK + + +G
Sbjct: 201 KALVTNIMNNIQGNISMLQKSLHSDAYPARGEVIVPRLSAGMIIGKGGEMIKRLAQETGT 260
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTY 258
++ D P ++RI + G ++ +A E + + K + + GV P ++ +
Sbjct: 261 KIQ-FKPDSDP---NSEDRIAVIVGSREQIYRATERITEIVNKAIKNNGVNPNGQQIF 314
>gi|449275835|gb|EMC84592.1| Far upstream element-binding protein 1, partial [Columba livia]
Length = 611
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 68 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 127
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 128 IVEKGRPTPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 179
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 180 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 234
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 144 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 200
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 201 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 256
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 257 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 305
>gi|291398647|ref|XP_002715950.1| PREDICTED: far upstream element-binding protein [Oryctolagus
cuniculus]
Length = 643
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 106 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 165
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 166 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 217
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 218 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 272
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 182 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 238
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 239 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 294
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 295 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 343
>gi|71997383|ref|NP_001023000.1| Protein ZK418.9, isoform a [Caenorhabditis elegans]
gi|373218578|emb|CCD61629.1| Protein ZK418.9, isoform a [Caenorhabditis elegans]
Length = 557
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Query: 82 MIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL-DGPVSSPDRIVLISGKEEPEAPVSPA 140
+IVP L G IIG+ GE+IK+ +T +I+ D +S DRI +I G + +
Sbjct: 244 VIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGTRDQIYRATER 303
Query: 141 MDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA 200
+ V + +G P++ A + VP+ + +IGK G IK I+ +GA
Sbjct: 304 ITEIVNRAIKNNGAPQDRGSAGTVLPGQSIFYMHVPAGKCGLVIGKGGENIKQIERETGA 363
Query: 201 SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAV 237
+ + A E EDE++ E++G ++ A V
Sbjct: 364 TCGLAPAAEQK---NEDEKVFEIKGSQLQIHHASHLV 397
>gi|449449385|ref|XP_004142445.1| PREDICTED: RNA-binding protein Nova-2-like [Cucumis sativus]
gi|449527683|ref|XP_004170839.1| PREDICTED: RNA-binding protein Nova-2-like [Cucumis sativus]
Length = 326
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 15/166 (9%)
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSP---DRIVLISGKEEPEAP 136
R +V GS+IG+ G I + ARI++ P DRI+++SG
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINE--- 93
Query: 137 VSPAMDAAV-RVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQ 195
+ AM+ + ++ + +DV+ + VRL+VP + +IGK GS IKS
Sbjct: 94 ILKAMELVLAKLLSELHAEEGDDVEPR------TKVRLIVPHSSCGAIIGKGGSTIKSFI 147
Query: 196 ENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241
E+S A +++ D Y+ +R+V + G + ++A + +V L
Sbjct: 148 EDSQAGIKISPQDNN--YMASTDRLVTLSGTIEEQMRATDLIVSKL 191
>gi|74198585|dbj|BAE39771.1| unnamed protein product [Mus musculus]
Length = 654
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 103 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 162
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 163 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 214
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 215 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 269
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 179 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 235
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 236 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 291
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 292 EMIKKIQNDAGVGIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 340
>gi|395839833|ref|XP_003792780.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 5 [Otolemur garnettii]
Length = 441
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 22/175 (12%)
Query: 52 SALPQSTGPDAA--AVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRA 109
S LP +GP A A P + +P + + +P VG+IIG+KG IK+ A
Sbjct: 243 SVLPPPSGPRGAPPAAPYHP-FAQYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGA 301
Query: 110 RIKVLDGPVSSPD---RIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGA 166
IK+ P PD R+V+I+G PEA A R+F ++ EN + K
Sbjct: 302 SIKI--APAEGPDVSERMVIITGP--PEA----QFKAQGRIFGKLK--EENFFNPKEEVK 351
Query: 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221
+R VPS+ A +IGK G + +Q + A V ++ D+ P E+E ++
Sbjct: 352 LEAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 400
>gi|37078458|sp|Q91WJ8.1|FUBP1_MOUSE RecName: Full=Far upstream element-binding protein 1; Short=FBP;
Short=FUSE-binding protein 1
gi|15928578|gb|AAH14763.1| Fubp1 protein [Mus musculus]
gi|148679986|gb|EDL11933.1| far upstream element (FUSE) binding protein 1, isoform CRA_b [Mus
musculus]
Length = 651
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 103 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 162
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 163 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 214
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ + + DQG Y + I
Sbjct: 215 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVL----ELIRDQGGFREVRNEYGSRIG 269
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 179 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 235
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 236 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 291
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 292 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 340
>gi|354468080|ref|XP_003496495.1| PREDICTED: far upstream element-binding protein 1-like [Cricetulus
griseus]
Length = 649
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I + +++ +I++ P+R +++G E +D
Sbjct: 113 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 172
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVR 203
V + G D G +++P+++A +IGK G IK +QE +G V+
Sbjct: 173 IVEKGRPAPGFHHGD------GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAG--VK 224
Query: 204 VLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASIS 263
++ + P D + + + G+ KV +A E V+ +R DQG Y + I
Sbjct: 225 MVMIQDGPQNTGAD-KPLRITGDPYKVQQAKEMVLELIR----DQGGFREVRNEYGSRIG 279
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVL---DGPVSS-PDRIVLISGK 130
PG+ V +++P K G +IG+ GE IK+ E RA +K++ DGP ++ D+ + I+G
Sbjct: 189 PGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGADKPLRITG- 245
Query: 131 EEPEAPVSPAMDAAVRVFKRVSGLPE--NDVDAKASGAAFCSVRLLVPSTQAINLIGKQG 188
+P V A + + + + G E N+ ++ G + + +P +IG+ G
Sbjct: 246 -DPYK-VQQAKEMVLELIRDQGGFREVRNEYGSRIGGNE--GIDVPIPRFAVGIVIGRNG 301
Query: 189 SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLR 242
+IK IQ ++G ++ D T +RI ++ G + A E + LR
Sbjct: 302 EMIKKIQNDAGVRIQFKPDDG-----TTPDRIAQITGPPDRCQHAAEIITDLLR 350
>gi|291415509|ref|XP_002723994.1| PREDICTED: KH-type splicing regulatory protein, partial
[Oryctolagus cuniculus]
Length = 349
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 84 VPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDA 143
VP VG IIGR GE I K +D+ ++++ P+R V ++G E +D
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 127
Query: 144 AVRVFKRVSGLPENDVDAKASGAAFCSVR-LLVPSTQAINLIGKQGSLIKSIQENSGASV 202
+ R G P A+G +V+ +++P+ +A +IGK G IK +QE +G +
Sbjct: 128 ---IVSRGRGGPPGQFHDSANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM 184
Query: 203 RVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQG 249
++ V + RI+ G+ KV +A E V+ LR+ DQG
Sbjct: 185 ILIQDGSQNTNVDKPLRII---GDPYKVQQACEMVMDILRER--DQG 226
>gi|290878251|emb|CBK39310.1| Pbp2p [Saccharomyces cerevisiae EC1118]
Length = 413
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 84/408 (20%), Positives = 170/408 (41%), Gaps = 47/408 (11%)
Query: 24 ATTESPTTESEAPPTIGSENTEHTTES--DSALPQSTGPDA-AAVPEEKKWP-GWPGHCV 79
+ T +PTT +P T+ + E T+E ++ + + DA + + P P
Sbjct: 9 SITTTPTTVLVSPNTLKRKKGEDTSEEQLEAEIKRVALKDADSHFDNDHDSPDNVPSDVH 68
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM+ V I+G KG I + +T ARI + + P+RIV + G + V+
Sbjct: 69 LRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCD---DVAK 125
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A VR G +N D + S+ LL+P +IGK+GS ++ I++ S
Sbjct: 126 AYGMIVRALLEEHGNEDNGEDIE------ISINLLIPHHLMGCIIGKRGSRLREIEDLSA 179
Query: 200 ASV------------RVLSADEAP-------FYVTEDERIVEMQGEAAKVLKALEAVVGH 240
A + R+L+ + P FY+++ +M+ V +++
Sbjct: 180 AKLFASPNQLLLSNDRILTINGVPDAIHIATFYISQTLLNFQMESPQKNVKRSIYYQPTQ 239
Query: 241 LRKFLVDQGV-LPLFEKTYNASISQERQVETWADKSSLHAATQSAIST-EYTPSTRRESL 298
L+D +F + + ++ + +K+ ++T +++T +YT ++
Sbjct: 240 FNSVLIDHSQPNTIFHQRNHQYHPSDKLLSYKPNKNLPISSTLLSMATPQYTTAS----- 294
Query: 299 FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
+ + + + +++ P +S + L ++ + Q + I + ++I
Sbjct: 295 -VANATAFQPNFVIPNVTVL-DGPVISPAPGNHL------LMNFVQQEIFIDEKFVGNVI 346
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
G G I +++ ++G I +Q+ E + I+GT Q A LI
Sbjct: 347 GKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLI 394
>gi|321258532|ref|XP_003193987.1| telomere length regulating RNA binding protein; Pbp2p [Cryptococcus
gattii WM276]
gi|317460457|gb|ADV22200.1| Telomere length regulating RNA binding protein, putative; Pbp2p
[Cryptococcus gattii WM276]
Length = 357
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 25/179 (13%)
Query: 60 PDAAAVPEEKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVS 119
P A A P+ PG P R ++ IIGR G + + E + AR+ V +
Sbjct: 67 PTAPAKPD----PG-PQQISMRSLIVTQDASIIIGRGGAHVNEIREKSSARVTVSESIPG 121
Query: 120 SPDRIVLISGKEEPEAPVSPAMDAAVRVF----KRVSGLPENDVDAKASGAAFCSVRLLV 175
+P+RI+ +SG +DA + F +R++ P DV + G+ +++ ++
Sbjct: 122 NPERILNVSGP----------LDAVAKAFGLIVRRINDEPF-DVPS-VPGSRAVTIKFII 169
Query: 176 PSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234
P+++ ++IGK GS IK IQE SGA L+A EA ER++ + G A V A+
Sbjct: 170 PNSRMGSVIGKGGSKIKEIQEASGAR---LNASEA-MLPGSTERVLSVSGVADAVHIAV 224
>gi|349576607|dbj|GAA21778.1| K7_Pbp2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 413
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 82/408 (20%), Positives = 167/408 (40%), Gaps = 47/408 (11%)
Query: 24 ATTESPTTESEAPPTI----GSENTEHTTESDSALPQSTGPDAAAVPEEKKWPGWPGHCV 79
+ T +PTT +P T+ G + +E E++ D+ + + P
Sbjct: 9 SITTTPTTVLISPNTLKRKKGEDTSEEQLEAEIKRVALKDADSHSDNDHDSPDNVPSDVH 68
Query: 80 FRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSP 139
RM+ V I+G KG I + +T ARI + + P+RIV + G + V+
Sbjct: 69 LRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCD---DVAK 125
Query: 140 AMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSG 199
A VR G +N D + S+ LL+P +IGK+GS ++ I++ S
Sbjct: 126 AYGMIVRALLEEHGNEDNGEDIE------ISINLLIPHHLMGCIIGKRGSRLREIEDLSA 179
Query: 200 ASV------------RVLSADEAP-------FYVTEDERIVEMQGEAAKVLKALEAVVGH 240
A + R+L+ + P FY+++ +M+ V +++
Sbjct: 180 AKLFASPNQLLLSNDRILTINGVPDAIHIATFYISQTLLNFQMESPQKNVKRSIYYQPTQ 239
Query: 241 LRKFLVDQGV-LPLFEKTYNASISQERQVETWADKSSLHAATQSAIST-EYTPSTRRESL 298
L+D +F + + ++ + +K+ ++T +++T +YT ++
Sbjct: 240 FNSVLIDHSQPNTIFHQRNHQYHPSDKLLSYKPNKNLPISSTLLSMATPQYTTAS----- 294
Query: 299 FLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDII 358
+ + + + +++ P +S + L ++ + Q + I + ++I
Sbjct: 295 -VANATAFQPNFVIPNVTVL-DGPVISPAPGNHL------LMNFVQQEIFIDEKFVGNVI 346
Query: 359 GVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLI 406
G G I +++ ++G I +Q+ E + I+GT Q A LI
Sbjct: 347 GKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLI 394
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,254,307,868
Number of Sequences: 23463169
Number of extensions: 306728647
Number of successful extensions: 1237517
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 1552
Number of HSP's that attempted gapping in prelim test: 1218495
Number of HSP's gapped (non-prelim): 15115
length of query: 466
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 320
effective length of database: 8,933,572,693
effective search space: 2858743261760
effective search space used: 2858743261760
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 79 (35.0 bits)