Query 012307
Match_columns 466
No_of_seqs 313 out of 1888
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 06:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3krm_A Insulin-like growth fac 99.9 1.4E-25 4.7E-30 202.7 15.6 155 169-415 3-159 (163)
2 2jvz_A KH type-splicing, FAR u 99.9 1.2E-25 4E-30 203.2 15.1 161 169-414 2-162 (164)
3 2anr_A Neuro-oncological ventr 99.9 1.6E-25 5.6E-30 205.2 13.7 171 167-414 4-177 (178)
4 3krm_A Insulin-like growth fac 99.9 2.7E-25 9.3E-30 200.7 12.5 155 77-244 2-157 (163)
5 1j4w_A FUSE binding protein; s 99.9 4.5E-25 1.5E-29 201.5 14.0 170 168-410 2-174 (174)
6 2anr_A Neuro-oncological ventr 99.9 3.1E-25 1.1E-29 203.3 12.2 161 75-244 3-176 (178)
7 2jzx_A Poly(RC)-binding protei 99.9 7.3E-25 2.5E-29 197.3 12.8 156 167-412 3-159 (160)
8 1j4w_A FUSE binding protein; s 99.9 4.4E-25 1.5E-29 201.6 11.2 161 76-241 1-174 (174)
9 2jzx_A Poly(RC)-binding protei 99.9 4.2E-25 1.4E-29 198.9 9.4 156 76-243 3-159 (160)
10 2jvz_A KH type-splicing, FAR u 99.9 1.7E-23 5.7E-28 189.1 13.3 156 78-244 2-161 (164)
11 3n89_A Defective in GERM LINE 99.9 2.5E-22 8.6E-27 200.9 14.2 221 75-411 27-260 (376)
12 2qnd_A FMR1 protein; KH domain 99.8 4E-19 1.4E-23 156.7 12.3 135 168-413 3-143 (144)
13 2qnd_A FMR1 protein; KH domain 99.8 1.6E-18 5.4E-23 152.8 12.0 139 77-243 3-142 (144)
14 2e3u_A PH-DIM2P, hypothetical 99.7 3.1E-17 1.1E-21 153.8 10.5 154 167-413 32-192 (219)
15 1wvn_A Poly(RC)-binding protei 99.6 2.2E-16 7.6E-21 125.6 7.6 73 341-413 4-76 (82)
16 1tua_A Hypothetical protein AP 99.6 6.5E-16 2.2E-20 141.3 9.7 140 171-412 6-160 (191)
17 1zzk_A Heterogeneous nuclear r 99.6 8.2E-16 2.8E-20 122.3 9.0 72 342-413 6-77 (82)
18 2p2r_A Poly(RC)-binding protei 99.6 4E-16 1.4E-20 122.3 7.0 72 342-413 4-75 (76)
19 1x4n_A FAR upstream element bi 99.6 1.2E-15 4.2E-20 123.9 9.2 75 341-415 13-87 (92)
20 1j5k_A Heterogeneous nuclear r 99.6 5.2E-16 1.8E-20 125.4 6.3 73 341-413 12-84 (89)
21 2hh3_A KH-type splicing regula 99.6 1.1E-15 3.7E-20 127.3 6.9 72 344-415 12-83 (106)
22 2e3u_A PH-DIM2P, hypothetical 99.6 2.4E-15 8.2E-20 140.9 9.3 144 79-243 35-191 (219)
23 2axy_A Poly(RC)-binding protei 99.6 1.9E-15 6.4E-20 117.5 6.8 69 342-412 4-72 (73)
24 1dtj_A RNA-binding neurooncolo 99.6 2.6E-15 9E-20 117.6 7.4 70 343-412 3-75 (76)
25 2dgr_A Ring finger and KH doma 99.5 7.5E-15 2.6E-19 116.6 6.5 70 341-413 8-77 (83)
26 2hh2_A KH-type splicing regula 99.5 1.1E-14 3.8E-19 121.6 7.8 71 344-414 8-81 (107)
27 1ec6_A RNA-binding protein NOV 99.5 8.8E-15 3E-19 117.7 6.5 73 343-415 3-78 (87)
28 1x4m_A FAR upstream element bi 99.5 2.1E-14 7.3E-19 117.1 8.7 74 341-414 13-88 (94)
29 2opv_A KHSRP protein; KH domai 99.5 4.9E-14 1.7E-18 112.7 8.3 70 343-412 14-85 (85)
30 1we8_A Tudor and KH domain con 99.5 6.9E-14 2.4E-18 116.2 7.5 73 343-415 15-89 (104)
31 2axy_A Poly(RC)-binding protei 99.4 1.5E-13 5.2E-18 106.6 6.5 70 167-243 3-72 (73)
32 1tua_A Hypothetical protein AP 99.4 1.7E-13 5.9E-18 125.2 7.5 144 79-243 5-160 (191)
33 1dtj_A RNA-binding neurooncolo 99.4 3.8E-13 1.3E-17 105.2 7.9 73 169-243 3-75 (76)
34 1zzk_A Heterogeneous nuclear r 99.4 6.9E-13 2.4E-17 105.3 9.2 73 167-244 5-77 (82)
35 2cte_A Vigilin; K homology typ 99.4 2.3E-13 7.8E-18 110.9 6.5 73 341-415 15-87 (94)
36 1vig_A Vigilin; RNA-binding pr 99.4 2.4E-13 8E-18 104.9 6.0 67 342-410 4-70 (71)
37 1wvn_A Poly(RC)-binding protei 99.4 5.1E-13 1.7E-17 106.1 7.9 73 167-244 4-76 (82)
38 2p2r_A Poly(RC)-binding protei 99.4 4.7E-13 1.6E-17 104.7 6.9 72 167-243 3-74 (76)
39 2opv_A KHSRP protein; KH domai 99.4 1.3E-12 4.5E-17 104.4 9.2 75 166-243 11-85 (85)
40 2ctm_A Vigilin; K homology typ 99.4 1.2E-12 4.1E-17 106.7 8.4 75 340-415 14-88 (95)
41 2ctl_A Vigilin; K homology typ 99.4 9.1E-13 3.1E-17 107.9 7.7 74 342-415 16-90 (97)
42 1j5k_A Heterogeneous nuclear r 99.4 8.5E-13 2.9E-17 106.4 6.6 74 166-244 11-84 (89)
43 1ec6_A RNA-binding protein NOV 99.3 9.2E-13 3.1E-17 105.8 6.5 74 169-244 3-76 (87)
44 2dgr_A Ring finger and KH doma 99.3 4.6E-13 1.6E-17 106.3 4.6 70 72-147 4-73 (83)
45 1x4m_A FAR upstream element bi 99.3 9E-13 3.1E-17 107.4 6.0 76 166-244 12-87 (94)
46 2hh2_A KH-type splicing regula 99.3 2E-12 6.8E-17 107.9 7.8 73 170-244 8-80 (107)
47 1x4n_A FAR upstream element bi 99.3 1.9E-12 6.4E-17 105.1 7.4 73 167-244 13-85 (92)
48 2hh3_A KH-type splicing regula 99.3 3.5E-12 1.2E-16 106.0 7.4 72 168-244 10-81 (106)
49 2ctk_A Vigilin; K homology typ 99.3 2.7E-12 9.3E-17 106.4 6.0 70 343-414 17-86 (104)
50 1we8_A Tudor and KH domain con 99.3 6.7E-12 2.3E-16 104.1 7.8 75 167-244 13-87 (104)
51 1vig_A Vigilin; RNA-binding pr 99.2 1.3E-11 4.5E-16 95.0 5.9 68 167-241 3-70 (71)
52 2ctm_A Vigilin; K homology typ 99.2 2E-11 6.8E-16 99.5 6.4 74 167-246 15-88 (95)
53 2ctj_A Vigilin; K homology typ 99.2 3.2E-11 1.1E-15 98.1 7.6 75 339-415 13-88 (95)
54 2ctl_A Vigilin; K homology typ 99.2 3.3E-11 1.1E-15 98.5 7.4 74 167-244 15-88 (97)
55 3n89_A Defective in GERM LINE 99.2 5.3E-11 1.8E-15 119.1 9.9 75 166-240 27-103 (376)
56 2ctf_A Vigilin; K homology typ 99.2 4E-11 1.4E-15 98.9 6.6 68 343-415 27-95 (102)
57 2cte_A Vigilin; K homology typ 99.2 3.2E-11 1.1E-15 98.1 5.7 71 167-244 15-85 (94)
58 2ctf_A Vigilin; K homology typ 99.1 9.2E-11 3.1E-15 96.7 4.5 68 167-244 25-93 (102)
59 2ctk_A Vigilin; K homology typ 99.0 1.8E-10 6E-15 95.4 5.8 71 167-244 15-85 (104)
60 2cpq_A FragIle X mental retard 99.0 3.1E-10 1.1E-14 90.8 4.6 67 341-412 13-81 (91)
61 2ctj_A Vigilin; K homology typ 98.9 1E-09 3.5E-14 89.2 5.5 71 167-244 15-86 (95)
62 1k1g_A SF1-BO isoform; splicin 98.8 1E-08 3.4E-13 88.2 7.8 73 340-412 4-99 (131)
63 2yqr_A KIAA0907 protein; struc 98.7 4.7E-08 1.6E-12 82.4 8.8 74 341-414 10-101 (119)
64 2cpq_A FragIle X mental retard 98.6 2.1E-08 7.1E-13 80.2 3.1 67 167-243 13-81 (91)
65 1k1g_A SF1-BO isoform; splicin 98.4 9E-07 3.1E-11 75.9 8.3 78 167-244 5-100 (131)
66 2yqr_A KIAA0907 protein; struc 98.3 1.1E-06 3.8E-11 74.0 7.9 78 167-244 10-100 (119)
67 2bl5_A MGC83862 protein, quaki 98.3 9E-07 3.1E-11 76.4 6.0 72 343-414 2-103 (140)
68 2bl5_A MGC83862 protein, quaki 98.1 2.6E-06 8.8E-11 73.6 4.2 39 78-116 2-46 (140)
69 3v69_A Protein filia; RNA-bind 98.0 1.5E-05 5.2E-10 67.4 7.8 69 345-414 58-126 (140)
70 3u1k_A Polyribonucleotide nucl 97.9 1.1E-05 3.8E-10 86.4 7.0 61 344-410 568-629 (630)
71 2cxc_A NUSA; transcription ter 97.6 3.5E-05 1.2E-09 66.9 4.0 102 78-205 36-139 (144)
72 3v69_A Protein filia; RNA-bind 97.5 0.00021 7.3E-09 60.5 7.1 70 169-244 56-125 (140)
73 3u1k_A Polyribonucleotide nucl 97.5 6.9E-05 2.3E-09 80.3 4.7 64 167-241 565-629 (630)
74 4aid_A Polyribonucleotide nucl 97.3 0.00014 4.6E-09 78.9 4.9 65 344-414 571-636 (726)
75 2cxc_A NUSA; transcription ter 97.2 0.00013 4.6E-09 63.2 2.9 38 169-206 36-73 (144)
76 4aid_A Polyribonucleotide nucl 96.5 0.0011 3.6E-08 72.0 3.1 66 168-244 569-635 (726)
77 2asb_A Transcription elongatio 96.0 0.0045 1.5E-07 58.3 4.2 96 87-208 126-223 (251)
78 1k0r_A NUSA; two component arr 96.0 0.0048 1.6E-07 61.3 4.6 96 87-208 249-346 (366)
79 2asb_A Transcription elongatio 95.4 0.017 5.9E-07 54.3 5.5 39 344-382 185-223 (251)
80 1k0r_A NUSA; two component arr 94.7 0.026 8.9E-07 56.1 5.0 38 344-381 308-345 (366)
81 1hh2_P NUSA, N utilization sub 94.7 0.027 9.1E-07 55.7 4.9 95 87-207 245-341 (344)
82 3cdi_A Polynucleotide phosphor 94.1 0.0091 3.1E-07 64.9 0.0 63 344-412 561-624 (723)
83 1hh2_P NUSA, N utilization sub 92.6 0.11 3.6E-06 51.4 5.0 37 344-380 304-340 (344)
84 1e3p_A Guanosine pentaphosphat 92.5 0.0071 2.4E-07 66.1 -4.0 59 346-410 601-660 (757)
85 3cdi_A Polynucleotide phosphor 91.1 0.041 1.4E-06 59.9 0.0 64 168-242 559-623 (723)
86 1e3p_A Guanosine pentaphosphat 88.8 0.024 8.1E-07 62.0 -4.2 62 169-241 598-660 (757)
87 1wh9_A 40S ribosomal protein S 75.9 1 3.4E-05 35.7 1.5 28 79-106 36-63 (92)
88 2pt7_G HP1451, hypothetical pr 73.8 1.5 5E-05 38.1 2.2 29 79-107 34-62 (152)
89 1wh9_A 40S ribosomal protein S 58.7 3.3 0.00011 32.6 1.3 27 345-371 37-63 (92)
90 2pt7_G HP1451, hypothetical pr 48.3 7.6 0.00026 33.5 2.0 29 344-372 34-62 (152)
91 3u5c_D RP13, YS3, 40S ribosoma 45.9 6.6 0.00023 36.4 1.3 29 79-107 45-73 (240)
92 3j20_C 30S ribosomal protein S 45.7 6.8 0.00023 35.7 1.3 27 80-106 42-68 (210)
93 2xzm_C KH domain containing pr 45.1 8.5 0.00029 35.8 1.9 28 79-106 48-75 (243)
94 3iz6_B 40S ribosomal protein S 42.1 6.9 0.00023 36.1 0.7 29 79-107 45-73 (227)
95 2ba0_A Archeal exosome RNA bin 41.1 41 0.0014 30.8 5.9 57 346-408 139-195 (229)
96 3gku_A Probable RNA-binding pr 40.4 7.7 0.00026 35.7 0.8 33 79-111 93-125 (225)
97 3r8n_C 30S ribosomal protein S 39.0 6.9 0.00024 35.5 0.2 27 80-106 63-89 (206)
98 2zkq_c 40S ribosomal protein S 37.5 7.9 0.00027 36.0 0.4 29 79-107 45-73 (243)
99 3i1m_C 30S ribosomal protein S 36.1 8 0.00027 35.8 0.2 27 80-106 64-90 (233)
100 2vqe_C 30S ribosomal protein S 34.1 12 0.00041 34.7 1.0 27 80-106 64-90 (239)
101 2ba0_A Archeal exosome RNA bin 32.7 60 0.0021 29.7 5.6 57 171-238 138-194 (229)
102 3iev_A GTP-binding protein ERA 32.4 11 0.00038 36.1 0.5 36 78-113 240-284 (308)
103 3bbn_C Ribosomal protein S3; s 31.7 11 0.00038 34.5 0.3 28 80-107 72-99 (218)
104 2z0s_A Probable exosome comple 29.2 1.1E+02 0.0038 27.9 6.8 58 346-409 151-209 (235)
105 3u5c_D RP13, YS3, 40S ribosoma 29.1 20 0.00068 33.2 1.6 27 345-371 46-72 (240)
106 1go3_E DNA-directed RNA polyme 29.1 30 0.001 30.4 2.7 37 341-380 5-53 (187)
107 3iev_A GTP-binding protein ERA 28.9 22 0.00076 33.8 2.0 37 342-378 239-284 (308)
108 3j20_C 30S ribosomal protein S 25.6 22 0.00077 32.2 1.2 34 346-379 43-83 (210)
109 2xzm_C KH domain containing pr 25.4 24 0.00083 32.7 1.5 27 345-371 49-75 (243)
110 3dhx_A Methionine import ATP-b 24.4 1.1E+02 0.0037 24.1 5.0 51 189-240 36-88 (106)
111 2z0s_A Probable exosome comple 24.2 1.4E+02 0.0047 27.3 6.4 58 171-239 150-208 (235)
112 3iz6_B 40S ribosomal protein S 24.1 21 0.00071 32.8 0.7 27 345-371 46-72 (227)
113 3gku_A Probable RNA-binding pr 21.3 22 0.00076 32.6 0.3 67 170-243 93-159 (225)
114 2zkq_c 40S ribosomal protein S 20.4 22 0.00076 33.0 0.1 28 344-371 45-72 (243)
115 1wf3_A GTP-binding protein; GT 20.1 21 0.00073 34.0 -0.1 27 87-113 240-274 (301)
No 1
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=202.68 Aligned_cols=155 Identities=24% Similarity=0.402 Sum_probs=130.4
Q ss_pred eEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhccccC
Q 012307 169 CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248 (466)
Q Consensus 169 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~~~~ 248 (466)
.+++|+||...+|.||||+|++||+|+++|||+|+|... ..| +..+|+|+|+|+++++.+|+.+|++++.+.....
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~-~~~---~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~ 78 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP-ETP---DSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFG 78 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCC-SST---TCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSC
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCC-CCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhcccccc
Confidence 578999999999999999999999999999999999743 233 6889999999999999999999999887641100
Q ss_pred ccccccccccCCcccccccccccccCCCcccCCCCCCCCCCCCCccCCCcccCCCccccccccCCCcccCCCCCCCcccc
Q 012307 249 GVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIR 328 (466)
Q Consensus 249 ~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~ 328 (466)
| .
T Consensus 79 -------------------------------------------~----------------------------~------- 80 (163)
T 3krm_A 79 -------------------------------------------P----------------------------K------- 80 (163)
T ss_dssp -------------------------------------------S----------------------------S-------
T ss_pred -------------------------------------------c----------------------------c-------
Confidence 0 0
Q ss_pred cCCCCCCCCCcccceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCC-C-CCCceEEEEEcCHHHHHHHHHHH
Q 012307 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR-G-LPDEITVEIKGTSSQVQLAQQLI 406 (466)
Q Consensus 329 ~s~~~~~~~~~~~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~-~-~~~er~V~I~Gt~~~V~~A~~lI 406 (466)
.....+.+|.||.+++|+||||+|.+|++|++.|||+|+|.+.. . ..+++.|+|+|++++|+.|+.+|
T Consensus 81 ----------~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I 150 (163)
T 3krm_A 81 ----------EEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKI 150 (163)
T ss_dssp ----------CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHH
T ss_pred ----------cCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHH
Confidence 00124678999999999999999999999999999999997643 2 23456899999999999999999
Q ss_pred HHHHhcCcC
Q 012307 407 QEYMNNHKE 415 (466)
Q Consensus 407 ~~~i~~~~~ 415 (466)
+++|++.++
T Consensus 151 ~~~i~~~~~ 159 (163)
T 3krm_A 151 RDILAQVKQ 159 (163)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 999998655
No 2
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=203.25 Aligned_cols=161 Identities=23% Similarity=0.375 Sum_probs=130.5
Q ss_pred eEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhccccC
Q 012307 169 CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVDQ 248 (466)
Q Consensus 169 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~~~~ 248 (466)
++.+|+||..++|.||||+|++||+|+++|||+|++.++...+ ...+|.|+|+|++++|.+|+.+|.+++.+.....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~ 78 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG 78 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSS---SSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCC
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999997533222 5678999999999999999999999887542100
Q ss_pred ccccccccccCCcccccccccccccCCCcccCCCCCCCCCCCCCccCCCcccCCCccccccccCCCcccCCCCCCCcccc
Q 012307 249 GVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTIR 328 (466)
Q Consensus 249 ~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~ 328 (466)
+ . ++ ..|+..
T Consensus 79 ---------~-------------------------------~----------~~-------------~~~~~~------- 88 (164)
T 2jvz_A 79 ---------F-------------------------------G----------DR-------------NEYGSR------- 88 (164)
T ss_dssp ---------C-------------------------------S----------SC-------------SSCTTS-------
T ss_pred ---------C-------------------------------C----------Cc-------------cccCCC-------
Confidence 0 0 00 001100
Q ss_pred cCCCCCCCCCcccceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHH
Q 012307 329 SSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQE 408 (466)
Q Consensus 329 ~s~~~~~~~~~~~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~ 408 (466)
...+.+|.||.+++|+||||+|.+|++|+++|||+|+|.+..+...++.|+|+|++++|+.|+.+|++
T Consensus 89 ------------~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 156 (164)
T 2jvz_A 89 ------------IGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 156 (164)
T ss_dssp ------------CSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHH
T ss_pred ------------CCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHH
Confidence 01245688999999999999999999999999999999876555668999999999999999999999
Q ss_pred HHhcCc
Q 012307 409 YMNNHK 414 (466)
Q Consensus 409 ~i~~~~ 414 (466)
+|++.+
T Consensus 157 ~i~~~~ 162 (164)
T 2jvz_A 157 LLQSLR 162 (164)
T ss_dssp HHHHHH
T ss_pred HHhhhh
Confidence 998643
No 3
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.93 E-value=1.6e-25 Score=205.16 Aligned_cols=171 Identities=23% Similarity=0.330 Sum_probs=133.3
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCC-CCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhcc
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADE-APFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFL 245 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~-~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~ 245 (466)
..++++|+||..++|.||||+|++||+|+++|||+|+|....+ .| +..+|+|+|+|+.++|.+|+.+|.+++.+..
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP---GTTERVCLIQGTIEALNAVHGFIAEKIREMP 80 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCT---TSSEEEEEEEECHHHHHHHHHHHHHHHTCCC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCC---CCCCceEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 5688999999999999999999999999999999999975322 33 6789999999999999999999999887653
Q ss_pred ccCccccccccccCCcccccccccccccCCCcccCCCCCCCCCCCCCccCCCcccCCCccccccccCCCcccCCCCCCCc
Q 012307 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALS 325 (466)
Q Consensus 246 ~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~ 325 (466)
.... .+..+. .+.+..
T Consensus 81 ~~~~--------~~~~~~-----------------------------------------------------~~~~~~--- 96 (178)
T 2anr_A 81 QNVA--------KTEPVS-----------------------------------------------------ILQPQT--- 96 (178)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred Cccc--------cCCccc-----------------------------------------------------ccCCcc---
Confidence 2100 000000 000000
Q ss_pred ccccCCCCCCCCCcccceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCC--CCCceEEEEEcCHHHHHHHH
Q 012307 326 TIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRG--LPDEITVEIKGTSSQVQLAQ 403 (466)
Q Consensus 326 ~~~~s~~~~~~~~~~~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~--~~~er~V~I~Gt~~~V~~A~ 403 (466)
. .......+.+|.||.+++|+||||+|.+|++|++.|||+|+|.+... ..+++.|+|+|++++|+.|+
T Consensus 97 ~----------~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~ 166 (178)
T 2anr_A 97 T----------VNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAV 166 (178)
T ss_dssp -------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHH
T ss_pred C----------CCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHH
Confidence 0 00012357899999999999999999999999999999999976532 34689999999999999999
Q ss_pred HHHHHHHhcCc
Q 012307 404 QLIQEYMNNHK 414 (466)
Q Consensus 404 ~lI~~~i~~~~ 414 (466)
.+|.++|.++.
T Consensus 167 ~~I~~~i~e~p 177 (178)
T 2anr_A 167 ELIIQKIQEDP 177 (178)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHHhCC
Confidence 99999998753
No 4
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.92 E-value=2.7e-25 Score=200.74 Aligned_cols=155 Identities=26% Similarity=0.325 Sum_probs=124.9
Q ss_pred ceEEEEEecccccceeeecCChhHHHHHHHhCceEEEeCC-CCCCCCeEEEecCCCCCCCCCChhHHHHHHHHHHhcCCC
Q 012307 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDG-PVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLP 155 (466)
Q Consensus 77 ~~~~rllvp~~~vG~IIGk~G~~Ik~I~~etga~I~v~~~-~~~~~ervv~I~G~~e~~~~v~~A~~ai~~i~~~i~~l~ 155 (466)
.-+++|+||.+++|.||||+|++||+|+++|||+|+|.+. .+++.+|+|+|+|.++. +..|...|..++.......
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~---v~~A~~~I~~~~~e~~~~~ 78 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA---QFKAQGRIYGKLKEENFFG 78 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH---HHHHHHHHHHHHHHTTSSC
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH---HHHHHHHHHHHHhcccccc
Confidence 3489999999999999999999999999999999999876 56889999999998754 3444444444443321110
Q ss_pred CCCcccccCCCcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHH
Q 012307 156 ENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALE 235 (466)
Q Consensus 156 ~~~~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~ 235 (466)
.......+.+|+||..++|+||||+|++|++|+++|||+|.|.. +..|. ..+++.|+|+|++++|.+|+.
T Consensus 79 -------~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~-~~~~~--~~~~~~v~I~G~~~~v~~A~~ 148 (163)
T 3krm_A 79 -------PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR-DQTPD--ENDQVIVKIIGHFYASQMAQR 148 (163)
T ss_dssp -------SSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT-TCCCC--TTSEEEEEEEECHHHHHHHHH
T ss_pred -------cccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC-CCCCC--CCCceEEEEEeCHHHHHHHHH
Confidence 01124567899999999999999999999999999999999974 44442 344568999999999999999
Q ss_pred HHHHHhhhc
Q 012307 236 AVVGHLRKF 244 (466)
Q Consensus 236 ~I~~~l~~~ 244 (466)
+|.+++++.
T Consensus 149 ~I~~~i~~~ 157 (163)
T 3krm_A 149 KIRDILAQV 157 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 5
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.92 E-value=4.5e-25 Score=201.49 Aligned_cols=170 Identities=26% Similarity=0.377 Sum_probs=127.1
Q ss_pred ceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhcccc
Q 012307 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD 247 (466)
Q Consensus 168 ~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~~~ 247 (466)
..+.+|+||.+++|.||||+|++||+|+++|||+|+|.+.+ + ...+|+|+|+|+.++|.+|+.+|.+++++....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~--~---~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD--G---TTPERIAQITGPPDRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT--T---SCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC--C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhcccC
Confidence 46789999999999999999999999999999999997432 2 467899999999999999999999998875211
Q ss_pred CccccccccccCCcccccccccccccCCCcccCCCCCCCCCCCCCccCCCcccCCCccccccccCCCcccCCCCCCCccc
Q 012307 248 QGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTI 327 (466)
Q Consensus 248 ~~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~ 327 (466)
. ++. + + |..+ . +.+. ...|...
T Consensus 77 ~---------~~~--------------~--------~-------p~~~--~-~~~~-----------~~~~~~~------ 98 (174)
T 1j4w_A 77 N---------PGG--------------P--------G-------PGGR--G-RGRG-----------QGNWNMG------ 98 (174)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C---------CCC--------------C--------C-------CCCC--C-CCCC-----------CCccccC------
Confidence 0 000 0 0 0000 0 0000 0001000
Q ss_pred ccCCCCCCCCCcccceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCC---CCCCceEEEEEcCHHHHHHHHH
Q 012307 328 RSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR---GLPDEITVEIKGTSSQVQLAQQ 404 (466)
Q Consensus 328 ~~s~~~~~~~~~~~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~---~~~~er~V~I~Gt~~~V~~A~~ 404 (466)
.+ ....+.+|.||.+++|+||||+|.+|++|++.|||+|+|.+.. ..++++.|+|+|++++|+.|+.
T Consensus 99 ---------~~-~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~ 168 (174)
T 1j4w_A 99 ---------PP-GGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQ 168 (174)
T ss_dssp ---------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHH
T ss_pred ---------CC-CCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 00 1235788999999999999999999999999999999998753 2356899999999999999999
Q ss_pred HHHHHH
Q 012307 405 LIQEYM 410 (466)
Q Consensus 405 lI~~~i 410 (466)
||+++|
T Consensus 169 ~I~~~i 174 (174)
T 1j4w_A 169 LIEEKI 174 (174)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999875
No 6
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=3.1e-25 Score=203.28 Aligned_cols=161 Identities=25% Similarity=0.418 Sum_probs=126.7
Q ss_pred CCceEEEEEecccccceeeecCChhHHHHHHHhCceEEEeCC---CCCCCCeEEEecCCCCCCCCCChhHHHHHHHHHHh
Q 012307 75 PGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDG---PVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRV 151 (466)
Q Consensus 75 ~~~~~~rllvp~~~vG~IIGk~G~~Ik~I~~etga~I~v~~~---~~~~~ervv~I~G~~e~~~~v~~A~~ai~~i~~~i 151 (466)
+++++++|+||.+++|.||||+|++||+|+++|||+|+|.+. .+++.+|+|+|+|..++ +.+|++.|.+++
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~---v~~A~~~I~~~~--- 76 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEA---LNAVHGFIAEKI--- 76 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHH---HHHHHHHHHHHH---
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHH---HHHHHHHHHHHH---
Confidence 578999999999999999999999999999999999999864 46788999999998754 444554444443
Q ss_pred cCCCCCCccc----------ccCCCcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEE
Q 012307 152 SGLPENDVDA----------KASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIV 221 (466)
Q Consensus 152 ~~l~~~~~~~----------~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v 221 (466)
.+........ ........+.+|+||.+++|+||||+|++||+|+++|||+|+|.+....+ ...++.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---~~~~~~v 153 (178)
T 2anr_A 77 REMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI---NLQNRVV 153 (178)
T ss_dssp TCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEE
T ss_pred hccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---CCCceEE
Confidence 3222111000 00112457899999999999999999999999999999999998544333 5678999
Q ss_pred EEecCHHHHHHHHHHHHHHhhhc
Q 012307 222 EMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 222 ~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
+|+|+.++|.+|+.+|.++|++.
T Consensus 154 ~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 154 TVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSC
T ss_pred EEEcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 7
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.92 E-value=7.3e-25 Score=197.31 Aligned_cols=156 Identities=24% Similarity=0.397 Sum_probs=129.7
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhccc
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~~ 246 (466)
...+.+|+||...+|.||||+|++||+|+++|||+|+|... +..+|.|+|.|+.++|.+|+.+|.+++.+...
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-------~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~ 75 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEEDIS 75 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-------TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-------CCCceEEEEEeCHHHHHHHHHHHHHHHHhhcc
Confidence 46789999999999999999999999999999999999742 35689999999999999999999998876421
Q ss_pred cCccccccccccCCcccccccccccccCCCcccCCCCCCCCCCCCCccCCCcccCCCccccccccCCCcccCCCCCCCcc
Q 012307 247 DQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALST 326 (466)
Q Consensus 247 ~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~ 326 (466)
.. + + . . +.
T Consensus 76 ~~-----------------~-------------------------~---~----------------~----~~------- 83 (160)
T 2jzx_A 76 SS-----------------M-------------------------T---N----------------S----TA------- 83 (160)
T ss_dssp SC-----------------C-------------------------C---S----------------S----SC-------
T ss_pred cc-----------------C-------------------------C---C----------------C----cc-------
Confidence 10 0 0 0 0 00
Q ss_pred cccCCCCCCCCCcccceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecC-CCCCCceEEEEEcCHHHHHHHHHH
Q 012307 327 IRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES-RGLPDEITVEIKGTSSQVQLAQQL 405 (466)
Q Consensus 327 ~~~s~~~~~~~~~~~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~-~~~~~er~V~I~Gt~~~V~~A~~l 405 (466)
. ....++.+|.||.+++|+||||+|.+|++|++.|||+|+|.+. .+..+++.|+|+|++++|+.|+.+
T Consensus 84 -------~----~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~ 152 (160)
T 2jzx_A 84 -------A----SRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQ 152 (160)
T ss_dssp -------C----CCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHH
T ss_pred -------C----CCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHH
Confidence 0 0012578899999999999999999999999999999999753 234678999999999999999999
Q ss_pred HHHHHhc
Q 012307 406 IQEYMNN 412 (466)
Q Consensus 406 I~~~i~~ 412 (466)
|.++|.+
T Consensus 153 I~~~i~e 159 (160)
T 2jzx_A 153 ICVVMLE 159 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999875
No 8
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.92 E-value=4.4e-25 Score=201.55 Aligned_cols=161 Identities=24% Similarity=0.400 Sum_probs=126.6
Q ss_pred CceEEEEEecccccceeeecCChhHHHHHHHhCceEEEeCCCCCCCCeEEEecCCCCCCCCCChhHHHHHHHHHHhcCCC
Q 012307 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLP 155 (466)
Q Consensus 76 ~~~~~rllvp~~~vG~IIGk~G~~Ik~I~~etga~I~v~~~~~~~~ervv~I~G~~e~~~~v~~A~~ai~~i~~~i~~l~ 155 (466)
+..+++|+||.+++|.||||+|++||+|+++|||+|+|.+..++..+|+|+|+|..++ +.+|++.|.+++.....-.
T Consensus 1 g~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~---v~~A~~~I~~~~~~~~~~~ 77 (174)
T 1j4w_A 1 GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR---AQHAAEIITDLLRSVQAGN 77 (174)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHH---HHHHHHHHHHHHHHHC---
T ss_pred CCeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHH---HHHHHHHHHHHHHhcccCC
Confidence 4578999999999999999999999999999999999987666788999999999764 5677777777666542100
Q ss_pred CCC-----------cccc--cCCCcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEE
Q 012307 156 END-----------VDAK--ASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVE 222 (466)
Q Consensus 156 ~~~-----------~~~~--~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~ 222 (466)
... .++. .......+.+|+||.+++|+||||+|++||+|+++|||+|+|... .+.+.+..++.|+
T Consensus 78 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~~~~~~~~~v~ 155 (174)
T 1j4w_A 78 PGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRN--PPPNADPNMKLFT 155 (174)
T ss_dssp --------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECC--CTTTSCTTEEEEE
T ss_pred CCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCC--CCCCCCCCceEEE
Confidence 000 0000 001134688999999999999999999999999999999999743 2334467899999
Q ss_pred EecCHHHHHHHHHHHHHHh
Q 012307 223 MQGEAAKVLKALEAVVGHL 241 (466)
Q Consensus 223 I~G~~~~V~~A~~~I~~~l 241 (466)
|+|++++|.+|+.+|.++|
T Consensus 156 I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 156 IRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EECCHHHHHHHHHHHHHHC
T ss_pred EECCHHHHHHHHHHHHHhC
Confidence 9999999999999998864
No 9
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.91 E-value=4.2e-25 Score=198.88 Aligned_cols=156 Identities=30% Similarity=0.508 Sum_probs=127.2
Q ss_pred CceEEEEEecccccceeeecCChhHHHHHHHhCceEEEeCCCCCCCCeEEEecCCCCCCCCCChhHHHHHHHHHHh-cCC
Q 012307 76 GHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRV-SGL 154 (466)
Q Consensus 76 ~~~~~rllvp~~~vG~IIGk~G~~Ik~I~~etga~I~v~~~~~~~~ervv~I~G~~e~~~~v~~A~~ai~~i~~~i-~~l 154 (466)
..++++|+||.+++|.||||+|++||+|+++|||+|+|.+. ++++|+|+|+|..++ +..|+..|.+.+... ...
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~---v~~A~~~I~~~i~e~~~~~ 77 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA---IFKAFAMIIDKLEEDISSS 77 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHH---HHHHHHHHHHHHHHHHTSC
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHH---HHHHHHHHHHHHHhhcccc
Confidence 45799999999999999999999999999999999999976 678999999998654 556666666554432 111
Q ss_pred CCCCcccccCCCcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHH
Q 012307 155 PENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKAL 234 (466)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~ 234 (466)
.. ..........+.+|+||.+++|+||||+|++|++|+++|||+|+|.+ +..| +..++.|+|+|++++|.+|+
T Consensus 78 ~~---~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~---~~~~~~v~I~G~~~~v~~A~ 150 (160)
T 2jzx_A 78 MT---NSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLP---NSTERAITIAGIPQSIIECV 150 (160)
T ss_dssp CC---SSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCST---TCCEEEEEEEECHHHHHHHH
T ss_pred CC---CCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCC---CCCceEEEEEcCHHHHHHHH
Confidence 00 00011224588999999999999999999999999999999999973 3444 57899999999999999999
Q ss_pred HHHHHHhhh
Q 012307 235 EAVVGHLRK 243 (466)
Q Consensus 235 ~~I~~~l~~ 243 (466)
.+|.+++.+
T Consensus 151 ~~I~~~i~e 159 (160)
T 2jzx_A 151 KQICVVMLE 159 (160)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998865
No 10
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=189.07 Aligned_cols=156 Identities=21% Similarity=0.353 Sum_probs=121.6
Q ss_pred eEEEEEecccccceeeecCChhHHHHHHHhCceEEEeCCC--CCCCCeEEEecCCCCCCCCCChhHHHHHHHHHHhcCCC
Q 012307 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGP--VSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLP 155 (466)
Q Consensus 78 ~~~rllvp~~~vG~IIGk~G~~Ik~I~~etga~I~v~~~~--~~~~ervv~I~G~~e~~~~v~~A~~ai~~i~~~i~~l~ 155 (466)
++++|+||.+++|.||||+|++||+|+++|||+|+|.+.. ++..+|+|+|+|.+++ +..|+..|..++. +..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~---v~~A~~~I~~ii~---e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK---VQQACEMVMDILR---ERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHH---HHHHHHHHHHHTT---CSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHH---HHHHHHHHHHHHH---hcc
Confidence 5789999999999999999999999999999999997542 4677899999997654 4444444444333 221
Q ss_pred CCCccc-cc-CCCcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHH
Q 012307 156 ENDVDA-KA-SGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKA 233 (466)
Q Consensus 156 ~~~~~~-~~-~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A 233 (466)
...... .. ......+.+|+||..++|+||||+|++|++|+++|||+|.|.+.+ + ...++.|+|+|++++|.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~---~~~~~~v~I~G~~~~v~~A 150 (164)
T 2jvz_A 76 QGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHA 150 (164)
T ss_dssp SCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--T---TSSEEEEEEESCHHHHHHH
T ss_pred CCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--C---CCCcEEEEEEcCHHHHHHH
Confidence 111000 00 001134688999999999999999999999999999999997532 2 4568999999999999999
Q ss_pred HHHHHHHhhhc
Q 012307 234 LEAVVGHLRKF 244 (466)
Q Consensus 234 ~~~I~~~l~~~ 244 (466)
+.+|.+++++.
T Consensus 151 ~~~I~~~i~~~ 161 (164)
T 2jvz_A 151 ARIINDLLQSL 161 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999998764
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.88 E-value=2.5e-22 Score=200.88 Aligned_cols=221 Identities=13% Similarity=0.132 Sum_probs=156.7
Q ss_pred CCceEEEEEecccccceeeecCC--hhHHHHHHHhCceEEEeCCC-----CCCCCeEEEecCCCCCCCCCChhHHHHHHH
Q 012307 75 PGHCVFRMIVPVLKVGSIIGRKG--ELIKKTCEDTRARIKVLDGP-----VSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147 (466)
Q Consensus 75 ~~~~~~rllvp~~~vG~IIGk~G--~~Ik~I~~etga~I~v~~~~-----~~~~ervv~I~G~~e~~~~v~~A~~ai~~i 147 (466)
...+++++.||..+|+.||||+| ++|++|+++|||+|+|++.. +......|+|+|..++ |.+|+.+|..
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~en---VE~AR~~I~~- 102 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGD---VDRARMLMRR- 102 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHH---HHHHHHHHHH-
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHH---HHHHHHHHHh-
Confidence 46799999999999999999999 99999999999999998764 1134578999999976 3344444433
Q ss_pred HHHhcCCCCCCcccccCCCcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCH
Q 012307 148 FKRVSGLPENDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEA 227 (466)
Q Consensus 148 ~~~i~~l~~~~~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~ 227 (466)
+ ....+.+.+|...+.. ...+..|.+ ++..+++|.+.+.... .......|+|+|..
T Consensus 103 ------l------------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~---~~~~sd~V~IrG~~ 158 (376)
T 3n89_A 103 ------N------------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEK---NGIVTTYLRITARE 158 (376)
T ss_dssp ------S------------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--------CEEEEEEEEEG
T ss_pred ------c------------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccc---cCCCCCEEEEEcCh
Confidence 1 2345666666543332 122334554 5678999998643211 01236679999999
Q ss_pred HHHHHHHHHHHHHhhhccccCccccccccccCCcccccccccccccCCCcccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 012307 228 AKVLKALEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLE 307 (466)
Q Consensus 228 ~~V~~A~~~I~~~l~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~ 307 (466)
.+|.+|.+.+..+++...... +
T Consensus 159 ~nv~~akeA~~~Ll~~l~~~e---------~------------------------------------------------- 180 (376)
T 3n89_A 159 KNQHELIEAAKRLNEILFRES---------P------------------------------------------------- 180 (376)
T ss_dssp GGHHHHHHHHHHHHHHHCC-----------C-------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHhhh---------c-------------------------------------------------
Confidence 877777666666555421100 0
Q ss_pred ccccCCCcccCCCCCCCcccccCCCCCCCCCcccceEEEEEeccCcccceecccc--chHHHHHhHhCCeEEEecCCCC-
Q 012307 308 SRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISYAEDIIGVGG--TSIENIRRTSGAIITVQESRGL- 384 (466)
Q Consensus 308 ~~~~~~~~~~yg~~~~~~~~~~s~~~~~~~~~~~~~t~~i~IP~~~~G~IIGkgG--~~Ik~Ir~~SGA~I~I~~~~~~- 384 (466)
. ....++.+|.|+..++..||||+| ..|++|+++|||+|.+++..+.
T Consensus 181 -------------~-----------------~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~ 230 (376)
T 3n89_A 181 -------------A-----------------PENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRN 230 (376)
T ss_dssp -------------C-----------------CSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC------
T ss_pred -------------c-----------------cccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcc
Confidence 0 001267889999999999999999 4569999999999999754321
Q ss_pred ---CCceEEEEEcCHHHHHHHHHHHHHHHh
Q 012307 385 ---PDEITVEIKGTSSQVQLAQQLIQEYMN 411 (466)
Q Consensus 385 ---~~er~V~I~Gt~~~V~~A~~lI~~~i~ 411 (466)
.+...|+|+|+.++|.+|++.|+++|-
T Consensus 231 d~~~~~~~ItItGs~e~V~~Ark~I~~lLP 260 (376)
T 3n89_A 231 ETRGNIYEIKVVGNIDNVLKARRYIMDLLP 260 (376)
T ss_dssp ---CCEEEEEEESCHHHHHHHHHHHHHTSE
T ss_pred cccCCceEEEEEeCHHHHHHHHHHHHhhCC
Confidence 235789999999999999999999874
No 12
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.79 E-value=4e-19 Score=156.71 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=106.8
Q ss_pred ceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhcccc
Q 012307 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLVD 247 (466)
Q Consensus 168 ~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~~~ 247 (466)
.++.+|+||.+.+|.+||++|++|+.|++++|++|.... ...++.+...+.++.|.+|..++ . .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~--------~~~~~~i~~~~~p~~v~~~~~~l-~----~--- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLD--------EDTCTFHIYGEDQDAVKKARSFL-E----F--- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEE--------TTTTEEEEEESSHHHHHHHHHHH-C----E---
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccC--------CCchheeeccCCHHHHHHHHHhh-h----c---
Confidence 467899999999999999999999999999995444332 12345555556799998886543 1 0
Q ss_pred CccccccccccCCcccccccccccccCCCcccCCCCCCCCCCCCCccCCCcccCCCccccccccCCCcccCCCCCCCccc
Q 012307 248 QGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALSTI 327 (466)
Q Consensus 248 ~~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~ 327 (466)
T Consensus 67 -------------------------------------------------------------------------------- 66 (144)
T 2qnd_A 67 -------------------------------------------------------------------------------- 66 (144)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCcccceEEEEEeccCcccceeccccchHHHHHhHhCC-eEEEecCCCC---CCc--eEEEEEcCHHHHHH
Q 012307 328 RSSALGRASGPIVTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGA-IITVQESRGL---PDE--ITVEIKGTSSQVQL 401 (466)
Q Consensus 328 ~~s~~~~~~~~~~~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA-~I~I~~~~~~---~~e--r~V~I~Gt~~~V~~ 401 (466)
...+|.||.+++|++|||+|.+|+.|++.||| +|+|....+. .++ +.|+|+|++++|+.
T Consensus 67 ---------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~ 131 (144)
T 2qnd_A 67 ---------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIAN 131 (144)
T ss_dssp ---------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHH
T ss_pred ---------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHH
Confidence 02468899999999999999999999999997 9999764332 123 35899999999999
Q ss_pred HHHHHHHHHhcC
Q 012307 402 AQQLIQEYMNNH 413 (466)
Q Consensus 402 A~~lI~~~i~~~ 413 (466)
|+.||.+.|++-
T Consensus 132 Ak~li~~~l~~l 143 (144)
T 2qnd_A 132 ATVLLDYHLNYL 143 (144)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999999763
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.77 E-value=1.6e-18 Score=152.85 Aligned_cols=139 Identities=22% Similarity=0.226 Sum_probs=101.9
Q ss_pred ceEEEEEecccccceeeecCChhHHHHHHHhCceEEEeCCCCCCCCeEEEecCCCCCCCCCChhHHHHHHHHHHhcCCCC
Q 012307 77 HCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPE 156 (466)
Q Consensus 77 ~~~~rllvp~~~vG~IIGk~G~~Ik~I~~etga~I~v~~~~~~~~ervv~I~G~~e~~~~v~~A~~ai~~i~~~i~~l~~ 156 (466)
.++.+|+||.+.||.+||++|++|++|++++|+.|...+. .+++.+...+.++ ++.++...+ .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~---~~~~~i~~~~~p~----------~v~~~~~~l-~--- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE---DTCTFHIYGEDQD----------AVKKARSFL-E--- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET---TTTEEEEEESSHH----------HHHHHHHHH-C---
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC---CchheeeccCCHH----------HHHHHHHhh-h---
Confidence 4688999999999999999999999999999944433322 3445444444442 232222111 1
Q ss_pred CCcccccCCCcceEEEEEeccCcceeeecCCchhHHHHHHHhCC-eEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHH
Q 012307 157 NDVDAKASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGA-SVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALE 235 (466)
Q Consensus 157 ~~~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga-~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~ 235 (466)
....++.||..++|++|||+|.+|+.|++.||+ +|+|.+.++.........+.|+|+|+.++|.+|+.
T Consensus 66 -----------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~ 134 (144)
T 2qnd_A 66 -----------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATV 134 (144)
T ss_dssp -----------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHH
T ss_pred -----------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHH
Confidence 123889999999999999999999999999997 99998654321100112246899999999999999
Q ss_pred HHHHHhhh
Q 012307 236 AVVGHLRK 243 (466)
Q Consensus 236 ~I~~~l~~ 243 (466)
+|.++|..
T Consensus 135 li~~~l~~ 142 (144)
T 2qnd_A 135 LLDYHLNY 142 (144)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998875
No 14
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.70 E-value=3.1e-17 Score=153.77 Aligned_cols=154 Identities=24% Similarity=0.281 Sum_probs=111.9
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecC-----HHHHHHHHHHHHHHh
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE-----AAKVLKALEAVVGHL 241 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~-----~~~V~~A~~~I~~~l 241 (466)
.....++.||.+.+|.|||++|++|+.|+++||++|++. ..++.|+|.++ ++++.+|+++|..++
T Consensus 32 aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~----------~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 32 FKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITID----------SETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp -CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEEC----------TTTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEE----------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 345679999999999999999999999999999999995 23567888875 699999999999988
Q ss_pred hhccccCccccccccccCCcccccccccccccCCCcccCCCCCCCCCCCCCccCCCcccCCCccccccccCCCcccCCCC
Q 012307 242 RKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQD 321 (466)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 321 (466)
+.+..+.....+ . |..+.+ . +
T Consensus 102 rg~~~e~g~~ll-~----------------------------------------dd~~~e------~-i----------- 122 (219)
T 2e3u_A 102 RGFSPERAFRLL-N----------------------------------------EGEYLE------I-I----------- 122 (219)
T ss_dssp TTCCHHHHGGGG-S----------------------------------------TTCEEE------E-E-----------
T ss_pred ccCCccccceec-c----------------------------------------CCccce------e-E-----------
Confidence 654322110000 0 000000 0 0
Q ss_pred CCCcccccCCCCCCCCCcccce--EEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHH
Q 012307 322 PALSTIRSSALGRASGPIVTQI--TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQV 399 (466)
Q Consensus 322 ~~~~~~~~s~~~~~~~~~~~~~--t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V 399 (466)
. ...+ ...-..+...+|+||||+|.+|+.|++.|||+|.|++ +.|+|.|+.++|
T Consensus 123 ------~-----------i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~-------~~v~i~G~~~~i 178 (219)
T 2e3u_A 123 ------N-----------LTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG-------KTVAIIGNPIQI 178 (219)
T ss_dssp ------E-----------GGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET-------TEEEEEECHHHH
T ss_pred ------E-----------cccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC-------eEEEEEeCHHHH
Confidence 0 0000 0000112346899999999999999999999999953 579999999999
Q ss_pred HHHHHHHHHHHhcC
Q 012307 400 QLAQQLIQEYMNNH 413 (466)
Q Consensus 400 ~~A~~lI~~~i~~~ 413 (466)
+.|+.+|.++|...
T Consensus 179 ~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 179 EIAKTAIEKLARGS 192 (219)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999653
No 15
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.65 E-value=2.2e-16 Score=125.60 Aligned_cols=73 Identities=32% Similarity=0.451 Sum_probs=66.7
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 012307 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413 (466)
Q Consensus 341 ~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~ 413 (466)
.+++.+|.||.+++|+||||+|++|++|+++|||+|+|++..+...++.|+|+|++++|+.|+.||+++|.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999999999999999999988666678999999999999999999999999876
No 16
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.63 E-value=6.5e-16 Score=141.31 Aligned_cols=140 Identities=23% Similarity=0.285 Sum_probs=113.3
Q ss_pred EEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEe-----cCHHHHHHHHHHHHHHhhhcc
Q 012307 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQ-----GEAAKVLKALEAVVGHLRKFL 245 (466)
Q Consensus 171 ~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~-----G~~~~V~~A~~~I~~~l~~~~ 245 (466)
.+++||...+|.|||++|++++.|++.+|++|++. ..++.|+|. |++.++.+|.++|..+.+.|.
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id----------~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~ 75 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD----------TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFP 75 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE----------TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE----------cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999995 346788888 999999999999999888775
Q ss_pred ccCccccccccccCCcccccccccccccCCCcccCCCCCCCCCCCCCccCCCcccCCCccccccccCCCcccCCCCCCCc
Q 012307 246 VDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPSTRRESLFLEREPQLESRYRLSGISIYGQDPALS 325 (466)
Q Consensus 246 ~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~ 325 (466)
.+.....+ + |.+
T Consensus 76 ~e~A~~Ll-~----------------------------------------Dd~--------------------------- 87 (191)
T 1tua_A 76 PEKAFRLL-E----------------------------------------EDQ--------------------------- 87 (191)
T ss_dssp HHHHGGGG-S----------------------------------------TTE---------------------------
T ss_pred HHHhhhcc-c----------------------------------------Ccc---------------------------
Confidence 43211000 0 000
Q ss_pred ccccCCCCCCCCCcccceEEEEEe----------ccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcC
Q 012307 326 TIRSSALGRASGPIVTQITQTMQI----------PISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGT 395 (466)
Q Consensus 326 ~~~~s~~~~~~~~~~~~~t~~i~I----------P~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt 395 (466)
.-..+.| +....|+||||+|.+|+.|+..|||+|.|++ ..|.|.|+
T Consensus 88 -----------------~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~-------~~v~i~G~ 143 (191)
T 1tua_A 88 -----------------ILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE-------YEVAIIGD 143 (191)
T ss_dssp -----------------EEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS-------SEEEEEEE
T ss_pred -----------------eeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC-------CEEEEEeC
Confidence 0111222 2356899999999999999999999999953 48999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012307 396 SSQVQLAQQLIQEYMNN 412 (466)
Q Consensus 396 ~~~V~~A~~lI~~~i~~ 412 (466)
+++++.|+..|.++|..
T Consensus 144 ~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 144 YERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 99999999999999974
No 17
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.63 E-value=8.2e-16 Score=122.28 Aligned_cols=72 Identities=38% Similarity=0.517 Sum_probs=67.1
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 012307 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413 (466)
Q Consensus 342 ~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~ 413 (466)
.++.+|.||.+++|+||||+|.+|++|+++|||+|+|+++..++++|.|+|+|++++|+.|+.||++++.+.
T Consensus 6 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 478899999999999999999999999999999999987665678899999999999999999999999864
No 18
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.63 E-value=4e-16 Score=122.26 Aligned_cols=72 Identities=29% Similarity=0.433 Sum_probs=67.2
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 012307 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413 (466)
Q Consensus 342 ~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~ 413 (466)
.++.+|.||.+++|+||||+|.+|++|++.|||+|+|.++.+++.++.|+|+|++++|+.|+.||+++|.++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 468899999999999999999999999999999999988666678999999999999999999999999864
No 19
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.62 E-value=1.2e-15 Score=123.92 Aligned_cols=75 Identities=27% Similarity=0.430 Sum_probs=69.2
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcC
Q 012307 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415 (466)
Q Consensus 341 ~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~~ 415 (466)
..++.+|.||.+++|+||||+|.+|++|+++|||+|+|++..+...++.|+|+|++++|++|+.||+++|++...
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 357899999999999999999999999999999999998866566789999999999999999999999998654
No 20
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.61 E-value=5.2e-16 Score=125.40 Aligned_cols=73 Identities=37% Similarity=0.510 Sum_probs=67.7
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 012307 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413 (466)
Q Consensus 341 ~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~ 413 (466)
..++.+|.||.+++|+||||+|.+|++|+++|||+|+|++.....+++.|+|+|++++|++|+.+|+++|.+.
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999999999999987666678999999999999999999999999864
No 21
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=127.28 Aligned_cols=72 Identities=19% Similarity=0.363 Sum_probs=65.9
Q ss_pred EEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcC
Q 012307 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415 (466)
Q Consensus 344 t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~~ 415 (466)
+.+|.||.+++|+||||+|++||+|+++|||+|+|+++.+...+|+|+|+|++++|++|+.||++++.+...
T Consensus 12 ~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 12 GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhcccc
Confidence 578999999999999999999999999999999998766556789999999999999999999999987544
No 22
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.59 E-value=2.4e-15 Score=140.92 Aligned_cols=144 Identities=22% Similarity=0.240 Sum_probs=102.2
Q ss_pred EEEEEecccccceeeecCChhHHHHHHHhCceEEEeCCCCCCCCeEEEecCCCCC--CCCCChhHHHHHHHHHHhcCCCC
Q 012307 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEP--EAPVSPAMDAAVRVFKRVSGLPE 156 (466)
Q Consensus 79 ~~rllvp~~~vG~IIGk~G~~Ik~I~~etga~I~v~~~~~~~~ervv~I~G~~e~--~~~v~~A~~ai~~i~~~i~~l~~ 156 (466)
..+|.||.+.+|.|||++|++|+.|+++|||+|++... ++.|.|.+.... -+.+.+|.+.|..+.. +...
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~d~~~i~kA~~~I~~i~r---g~~~ 106 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETEDPLAVWKARDIVLAIGR---GFSP 106 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCCSHHHHHHHHHHHHHHHT---TCCH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCCCHHHHHHHHHHHHHHhc---cCCc
Confidence 56899999999999999999999999999999999633 567899886521 1224445554444331 1000
Q ss_pred CCcccccCCCcceEEEEEec-----------cCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEec
Q 012307 157 NDVDAKASGAAFCSVRLLVP-----------STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG 225 (466)
Q Consensus 157 ~~~~~~~~~~~~~~~~llVP-----------~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G 225 (466)
....... .+......+.++ ...+|+||||+|.+|+.|++.|||+|.|. ++.|.|.|
T Consensus 107 e~g~~ll-~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~------------~~~v~i~G 173 (219)
T 2e3u_A 107 ERAFRLL-NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY------------GKTVAIIG 173 (219)
T ss_dssp HHHGGGG-STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE------------TTEEEEEE
T ss_pred cccceec-cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC------------CeEEEEEe
Confidence 0000000 001111223232 23689999999999999999999999996 35699999
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 012307 226 EAAKVLKALEAVVGHLRK 243 (466)
Q Consensus 226 ~~~~V~~A~~~I~~~l~~ 243 (466)
+.++|+.|+.+|.++|..
T Consensus 174 ~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 174 NPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 999999999999999965
No 23
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.58 E-value=1.9e-15 Score=117.45 Aligned_cols=69 Identities=23% Similarity=0.332 Sum_probs=64.5
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 012307 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412 (466)
Q Consensus 342 ~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~ 412 (466)
.++.+|.||.+++|+||||+|.+|++|+++|||+|+|++. +..+|+|+|+|++++|+.|+.+|.++|.+
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999875 35799999999999999999999999986
No 24
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.58 E-value=2.6e-15 Score=117.58 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=63.4
Q ss_pred eEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCC---CCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 012307 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR---GLPDEITVEIKGTSSQVQLAQQLIQEYMNN 412 (466)
Q Consensus 343 ~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~---~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~ 412 (466)
.+.+|.||.+++|+||||+|.+|++|++.|||+|+|++.. ++..++.|+|+|++++|+.|+.+|+++|.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999998742 345689999999999999999999999875
No 25
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=7.5e-15 Score=116.61 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=63.2
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 012307 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 413 (466)
Q Consensus 341 ~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~ 413 (466)
.+++.+|.||.+++|+||||+|++||+|+++|||+|+|.... +++.|+|+|++++|++|+++|.+++...
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~---~~~~v~ItG~~e~v~~A~~~I~~~i~~r 77 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD---KEPVFAVTGMPENVDRAREEIEAHITLR 77 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS---SCCEEEEEECTTTHHHHHHHHHHHHHSC
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC---CCCeEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999999999999997532 4689999999999999999999987753
No 26
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=121.57 Aligned_cols=71 Identities=27% Similarity=0.434 Sum_probs=64.5
Q ss_pred EEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhcCc
Q 012307 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRG---LPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414 (466)
Q Consensus 344 t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~---~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~ 414 (466)
+.+|.||.+++|+||||+|++|++|+++|||+|+|.+... ...+++|+|+|++++|++|+.+|+++|.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 6789999999999999999999999999999999987532 3468999999999999999999999998754
No 27
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.53 E-value=8.8e-15 Score=117.65 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=65.9
Q ss_pred eEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCC---CCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcC
Q 012307 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR---GLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415 (466)
Q Consensus 343 ~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~---~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~~ 415 (466)
++.+|.||.+++|+||||+|.+|++|++.|||+|+|++.. ++..++.|+|+|++++|+.|+.+|+++|.+...
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 78 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQG 78 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccc
Confidence 5789999999999999999999999999999999998743 345689999999999999999999999987543
No 28
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.53 E-value=2.1e-14 Score=117.07 Aligned_cols=74 Identities=23% Similarity=0.404 Sum_probs=66.5
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCC--CCCceEEEEEcCHHHHHHHHHHHHHHHhcCc
Q 012307 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRG--LPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414 (466)
Q Consensus 341 ~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~--~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~ 414 (466)
.+++.+|.||.+++|+||||+|.+|++|+++|||+|+|.+... ...+|.|+|+|++++|+.|+.||+++|.+..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 3578899999999999999999999999999999999987533 3468999999999999999999999998743
No 29
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.49 E-value=4.9e-14 Score=112.74 Aligned_cols=70 Identities=21% Similarity=0.381 Sum_probs=63.4
Q ss_pred eEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCC--CCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 012307 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRG--LPDEITVEIKGTSSQVQLAQQLIQEYMNN 412 (466)
Q Consensus 343 ~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~--~~~er~V~I~Gt~~~V~~A~~lI~~~i~~ 412 (466)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.+... ...+|.|+|+|++++++.|+.+|++++.+
T Consensus 14 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999999987532 45789999999999999999999998863
No 30
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.47 E-value=6.9e-14 Score=116.20 Aligned_cols=73 Identities=30% Similarity=0.434 Sum_probs=65.7
Q ss_pred eEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCC--CCceEEEEEcCHHHHHHHHHHHHHHHhcCcC
Q 012307 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGL--PDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415 (466)
Q Consensus 343 ~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~--~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~~ 415 (466)
.+.+|.||.+++|+||||+|.+|++|+++|||+|+|++..+. ++++.|+|+|++++|+.|+.+|+++|.+...
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~~ 89 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEE 89 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhChH
Confidence 678999999999999999999999999999999999875432 3589999999999999999999999987543
No 31
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.43 E-value=1.5e-13 Score=106.59 Aligned_cols=70 Identities=27% Similarity=0.534 Sum_probs=64.2
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhh
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 243 (466)
.....+|+||.+.+|.||||+|++||+|+++|||+|+|.+. +..+|+|+|.|++++|.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999743 35699999999999999999999999875
No 32
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.42 E-value=1.7e-13 Score=125.23 Aligned_cols=144 Identities=18% Similarity=0.206 Sum_probs=101.5
Q ss_pred EEEEEecccccceeeecCChhHHHHHHHhCceEEEeCCCCCCCCeEEEecCCCCCC--CCCChhHHHHHHHHHHhcCCCC
Q 012307 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPE--APVSPAMDAAVRVFKRVSGLPE 156 (466)
Q Consensus 79 ~~rllvp~~~vG~IIGk~G~~Ik~I~~etga~I~v~~~~~~~~ervv~I~G~~e~~--~~v~~A~~ai~~i~~~i~~l~~ 156 (466)
.++++||.+.+|.|||++|++++.|++++|++|++.. .++.|+|.-..... ..+.+|.+.|..+.. ++..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r---gf~~ 76 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPPVNLMKAAEVVKAISL---GFPP 76 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCHHHHHHHHHHHHHHHH---TCCH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc---CCCH
Confidence 4699999999999999999999999999999999964 37788887332211 124455555543321 1110
Q ss_pred CCcccccCCCcceEEEEEec----------cCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecC
Q 012307 157 NDVDAKASGAAFCSVRLLVP----------STQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE 226 (466)
Q Consensus 157 ~~~~~~~~~~~~~~~~llVP----------~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~ 226 (466)
.+.-.... +......+.++ ....|+||||+|.+|+.|+..|||+|.|. ++.|.|.|+
T Consensus 77 e~A~~Ll~-Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~------------~~~v~i~G~ 143 (191)
T 1tua_A 77 EKAFRLLE-EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG------------EYEVAIIGD 143 (191)
T ss_dssp HHHGGGGS-TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC------------SSEEEEEEE
T ss_pred HHhhhccc-CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc------------CCEEEEEeC
Confidence 00000000 11122223343 24689999999999999999999999995 237999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 012307 227 AAKVLKALEAVVGHLRK 243 (466)
Q Consensus 227 ~~~V~~A~~~I~~~l~~ 243 (466)
.++++.|...|.+++..
T Consensus 144 ~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 144 YERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 99999999999998864
No 33
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.41 E-value=3.8e-13 Score=105.19 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=63.8
Q ss_pred eEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhh
Q 012307 169 CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243 (466)
Q Consensus 169 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 243 (466)
.+.+|+||.+++|.||||+|++|++|+++|||+|.|.+.++. +.+..+|.|+|.|++++|.+|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCC--STTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999854321 1267799999999999999999999998764
No 34
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.41 E-value=6.9e-13 Score=105.29 Aligned_cols=73 Identities=23% Similarity=0.455 Sum_probs=65.9
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
...+.+|+||.+++|.||||+|++|++|+++|||+|+|.. ..| +..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECC--TTS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcC--CCC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 5688999999999999999999999999999999999963 223 577899999999999999999999998864
No 35
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.41 E-value=2.3e-13 Score=110.90 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=65.5
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcC
Q 012307 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415 (466)
Q Consensus 341 ~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~~ 415 (466)
.+++.+|.||.+++|.|||++|.+|++|+++|||+|+|++..+ .++.|+|+|++++|+.|+.+|++++.+...
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~--~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD--PSNQIKITGTKEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS--SCCEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCC--CCCeEEEEECHHHHHHHHHHHHHHhhcccc
Confidence 5688999999999999999999999999999999999975332 457999999999999999999999987654
No 36
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.40 E-value=2.4e-13 Score=104.90 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=60.6
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 012307 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYM 410 (466)
Q Consensus 342 ~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i 410 (466)
..+.+|.||.+++|.|||++|.+|++|+++|||+|+|+++. ..++.|+|+|++++|+.|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g--~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS--EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC--SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC--CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999999999997643 36789999999999999999998764
No 37
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=5.1e-13 Score=106.06 Aligned_cols=73 Identities=25% Similarity=0.341 Sum_probs=64.8
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
...+.+|+||.+++|.||||+|++|++|+++|||+|+|... .+ +..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP--VE---GSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC--CT---TCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC--CC---CCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 56889999999999999999999999999999999999742 22 678999999999999999999999988764
No 38
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.39 E-value=4.7e-13 Score=104.69 Aligned_cols=72 Identities=26% Similarity=0.357 Sum_probs=65.2
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhh
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 243 (466)
...+.+|+||.+++|.||||+|++|++|+++|||+|.|.. ..+ +..+|.|+|.|++++|.+|+.+|.+++++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN--PVE---GSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC--CCT---TCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcC--CCC---CCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999999974 223 67899999999999999999999998875
No 39
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=104.37 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=65.6
Q ss_pred CcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhh
Q 012307 166 AAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243 (466)
Q Consensus 166 ~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 243 (466)
......+|.||.+++|.||||+|++||+|+++|||+|.|..+...+ ...+|.|+|+|+++++.+|+.+|.+++++
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 3567889999999999999999999999999999999998533222 56799999999999999999999988753
No 40
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.37 E-value=1.2e-12 Score=106.72 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=66.8
Q ss_pred ccceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcC
Q 012307 340 VTQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415 (466)
Q Consensus 340 ~~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~~ 415 (466)
..+++.+|.||.+++|.|||++|.+|++|+++|||+|+|+++. ..+++.|+|+|++++|+.|+.+|.+++.+..+
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999997543 23578999999999999999999999987655
No 41
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.37 E-value=9.1e-13 Score=107.89 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=65.6
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCC-CCCceEEEEEcCHHHHHHHHHHHHHHHhcCcC
Q 012307 342 QITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRG-LPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415 (466)
Q Consensus 342 ~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~-~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~~ 415 (466)
..+.+|.||.++++.|||++|.+|++|+++|||+|+|++... ...++.|+|+|+.++|+.|+.+|..++.+..+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999999999999976432 23578999999999999999999999887543
No 42
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.36 E-value=8.5e-13 Score=106.44 Aligned_cols=74 Identities=23% Similarity=0.451 Sum_probs=66.8
Q ss_pred CcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 166 AAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 166 ~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
....+.+|+||.+++|.||||+|++||+|+++|||+|+|.. ..| +..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~--~~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECS--CCS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecC--CCC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 36788999999999999999999999999999999999963 223 577999999999999999999999998875
No 43
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=9.2e-13 Score=105.79 Aligned_cols=74 Identities=22% Similarity=0.242 Sum_probs=65.4
Q ss_pred eEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 169 CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 169 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
.+.+|+||..++|.||||+|++|++|+++|||+|.|.+.++. +.+..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB--STTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999854321 12678999999999999999999999998874
No 44
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=4.6e-13 Score=106.26 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=59.7
Q ss_pred CCCCCceEEEEEecccccceeeecCChhHHHHHHHhCceEEEeCCCCCCCCeEEEecCCCCCCCCCChhHHHHHHH
Q 012307 72 PGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRV 147 (466)
Q Consensus 72 ~~~~~~~~~rllvp~~~vG~IIGk~G~~Ik~I~~etga~I~v~~~~~~~~ervv~I~G~~e~~~~v~~A~~ai~~i 147 (466)
|..++.++++|.||.+++|.||||+|++||+|+++|||+|+|+.. ..+|+|+|+|..++ +.+|.+.|..+
T Consensus 4 ~~~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~---~~~~~v~ItG~~e~---v~~A~~~I~~~ 73 (83)
T 2dgr_A 4 GSSGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR---DKEPVFAVTGMPEN---VDRAREEIEAH 73 (83)
T ss_dssp CCSCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS---SSCCEEEEEECTTT---HHHHHHHHHHH
T ss_pred CCCCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC---CCCCeEEEEcCHHH---HHHHHHHHHHH
Confidence 345688999999999999999999999999999999999999854 34789999999976 55666666664
No 45
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.34 E-value=9e-13 Score=107.38 Aligned_cols=76 Identities=25% Similarity=0.407 Sum_probs=66.8
Q ss_pred CcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 166 AAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 166 ~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
+...+.+|+||.+++|+||||+|++||+|+++|||+|.|..+.... ...+|+|+|+|++++|.+|+.+|.+++++.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999999999999997432211 357899999999999999999999998764
No 46
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=2e-12 Score=107.89 Aligned_cols=73 Identities=16% Similarity=0.296 Sum_probs=64.1
Q ss_pred EEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 170 ~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
+.+|+||.+++|+||||+|++||+|+++|||+|+|..+. .+ ..+..+|.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999997432 22 22467899999999999999999999988764
No 47
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.33 E-value=1.9e-12 Score=105.08 Aligned_cols=73 Identities=22% Similarity=0.255 Sum_probs=65.9
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
..++.+|+||.+++|.||||+|++|++|+++|||+|+|.... + +..+|.|+|+|++++|.+|+.+|.+++++.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--~---g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS--G---GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC--T---TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC--C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 568899999999999999999999999999999999997432 2 467899999999999999999999998864
No 48
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=3.5e-12 Score=105.97 Aligned_cols=72 Identities=24% Similarity=0.382 Sum_probs=63.6
Q ss_pred ceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 168 ~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
..+++|+||.++++.||||+|++||+|+++|+|+|+|.+++ + ...+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C---CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 35789999999999999999999999999999999997432 2 466899999999999999999999998864
No 49
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=2.7e-12 Score=106.37 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=63.2
Q ss_pred eEEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCc
Q 012307 343 ITQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414 (466)
Q Consensus 343 ~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~ 414 (466)
.+.+|.||.+++|.|||++|.+|++|+++|||+|+|+++.. +.+.|+|+|+.++|+.|+.+|.+++.+..
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--QSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--TCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC--CcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 67899999999999999999999999999999999976433 45699999999999999999999988744
No 50
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.27 E-value=6.7e-12 Score=104.14 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=65.5
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
...+.+|+||.+++|.||||+|++||+|+++|||+|.|....... ...++.|+|.|+.++|.+|+.+|.+++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT---LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC---CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 557899999999999999999999999999999999997432110 346899999999999999999999999764
No 51
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.21 E-value=1.3e-11 Score=95.02 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=60.7
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHh
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHL 241 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l 241 (466)
...+..|.||.+++|.|||++|++|++|+++|||+|.|+++ +..+|.|+|.|..++|.+|+.+|.+++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD-------SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC-------CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC-------CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999742 235789999999999999999998754
No 52
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=2e-11 Score=99.46 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=65.6
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhccc
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKFLV 246 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~~ 246 (466)
..++.+|.||.++++.|||++|++|++|+++|||+|+|+.+. ...++.|+|+|.+++|.+|+.+|..+++++..
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g------~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG------APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT------CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC------CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999997422 23478999999999999999999999887644
No 53
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=3.2e-11 Score=98.11 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=66.4
Q ss_pred cccceEEEEEeccCcccceeccccchHHHHHhHh-CCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcC
Q 012307 339 IVTQITQTMQIPISYAEDIIGVGGTSIENIRRTS-GAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415 (466)
Q Consensus 339 ~~~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~S-GA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~~ 415 (466)
+...++.+|.||.++++.|||++|.+|++|+++| ||+|+|+++ +...+.|+|.|+.++|++|+.+|++++.+...
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~--g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e~ 88 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE--GSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQT 88 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT--TTTCCEEEEESCHHHHHHHHHHHHHHHHHHSC
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC--CCCcceEEEEcCHHHHHHHHHHHHHHHhhhhh
Confidence 3466789999999999999999999999999999 999999653 34567999999999999999999999987553
No 54
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.18 E-value=3.3e-11 Score=98.54 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=64.9
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
...+..|.||..+++.|||++|++|++|+++|||+|.|++.. .+ ...++.|+|+|..+++.+|+.+|..++.+.
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g-~~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKD-DG---NQPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTT-TC---SSCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCC-CC---CCCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999997432 22 346789999999999999999999988764
No 55
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.18 E-value=5.3e-11 Score=119.14 Aligned_cols=75 Identities=11% Similarity=0.041 Sum_probs=62.2
Q ss_pred CcceEEEEEeccCcceeeecCCc--hhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHH
Q 012307 166 AAFCSVRLLVPSTQAINLIGKQG--SLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGH 240 (466)
Q Consensus 166 ~~~~~~~llVP~~~vg~IIGk~G--~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~ 240 (466)
...++.++.||..+++.||||+| ++|++|+++|||+|+|+..+............|+|+|..++|++|+.+|.++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 36799999999999999999999 9999999999999999743300011124567899999999999999999873
No 56
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.16 E-value=4e-11 Score=98.87 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=61.9
Q ss_pred eEEEEEeccCcccceeccccchHHHHHhH-hCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcC
Q 012307 343 ITQTMQIPISYAEDIIGVGGTSIENIRRT-SGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHKE 415 (466)
Q Consensus 343 ~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~-SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~~ 415 (466)
++.+|.||..+++.|||++|++|++|+++ ++++|.|++ +++.|+|+|++++|++|+.+|++++++..+
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999997 599999976 356999999999999999999999987654
No 57
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.15 E-value=3.2e-11 Score=98.10 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=63.5
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
...+.+|.||.+.+|.|||++|++||+|+++|||+|.|++. +..++.|+|+|+.++|.+|+.+|..++.+.
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~-------~~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP-------DDPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT-------TSSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC-------CCCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 56889999999999999999999999999999999999742 233579999999999999999999998764
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.05 E-value=9.2e-11 Score=96.71 Aligned_cols=68 Identities=21% Similarity=0.346 Sum_probs=60.8
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHH-hCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQEN-SGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~-sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
...+.+|.||..+++.|||++|++|++|+++ ++++|.|+. .++.|+|+|+++.|.+|+.+|..++++.
T Consensus 25 ~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 25 SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999997 489999862 3678999999999999999999988764
No 59
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.05 E-value=1.8e-10 Score=95.43 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=63.0
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
......|.||..+++.|||++|++|++|+++|||+|.|.+. +...+.|+|+|..++|.+|+.+|..++.+.
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~-------g~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP-------ELQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT-------TTTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 34789999999999999999999999999999999999742 224569999999999999999999998764
No 60
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.98 E-value=3.1e-10 Score=90.76 Aligned_cols=67 Identities=21% Similarity=0.316 Sum_probs=58.5
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHhHhCCe-EEEecCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Q 012307 341 TQITQTMQIPISYAEDIIGVGGTSIENIRRTSGAI-ITVQESRGLPDEITVEIKG-TSSQVQLAQQLIQEYMNN 412 (466)
Q Consensus 341 ~~~t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~-I~I~~~~~~~~er~V~I~G-t~~~V~~A~~lI~~~i~~ 412 (466)
..+..+|.||.+++|.|||++|.+|++|+++|||+ |.|.+ ++.+|+|.| +.+++++|+.+|...-+.
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 34678899999999999999999999999999998 99975 346999999 889999999999655443
No 61
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.92 E-value=1e-09 Score=89.20 Aligned_cols=71 Identities=24% Similarity=0.367 Sum_probs=63.8
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHh-CCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENS-GASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~s-ga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
..++..|.||..+++.|||++|.+|++|+++| ||+|.|+.. +...+.|+|.|..++|.+|+.+|..++.+.
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 66889999999999999999999999999999 999999632 345678999999999999999999998764
No 62
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.79 E-value=1e-08 Score=88.19 Aligned_cols=73 Identities=21% Similarity=0.397 Sum_probs=61.7
Q ss_pred ccceEEEEEeccC------cccceeccccchHHHHHhHhCCeEEEecCC----------------CCCCceEEEEEc-CH
Q 012307 340 VTQITQTMQIPIS------YAEDIIGVGGTSIENIRRTSGAIITVQESR----------------GLPDEITVEIKG-TS 396 (466)
Q Consensus 340 ~~~~t~~i~IP~~------~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~----------------~~~~er~V~I~G-t~ 396 (466)
...++.+|.||.+ ++|.|||.+|.+||+|+++|||+|.|.... +..++-.|.|++ +.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 4568899999988 899999999999999999999999996521 112367899999 57
Q ss_pred HHHHHHHHHHHHHHhc
Q 012307 397 SQVQLAQQLIQEYMNN 412 (466)
Q Consensus 397 ~~V~~A~~lI~~~i~~ 412 (466)
+.+++|+.+|+++|..
T Consensus 84 e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8999999999999976
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=4.7e-08 Score=82.39 Aligned_cols=74 Identities=12% Similarity=0.236 Sum_probs=59.3
Q ss_pred cceEEEEEeccC-------cccceeccccchHHHHHhHhCCeEEEecCC----------CCCCceEEEEEc-CHHHHHHH
Q 012307 341 TQITQTMQIPIS-------YAEDIIGVGGTSIENIRRTSGAIITVQESR----------GLPDEITVEIKG-TSSQVQLA 402 (466)
Q Consensus 341 ~~~t~~i~IP~~-------~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~----------~~~~er~V~I~G-t~~~V~~A 402 (466)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|.... +..++-.|.|.+ +.+++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 446778888865 679999999999999999999999996321 112455788876 58899999
Q ss_pred HHHHHHHHhcCc
Q 012307 403 QQLIQEYMNNHK 414 (466)
Q Consensus 403 ~~lI~~~i~~~~ 414 (466)
+.||+++|....
T Consensus 90 ~~~Ie~Ll~~v~ 101 (119)
T 2yqr_A 90 KKLCENLLQTVH 101 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhchH
Confidence 999999998643
No 64
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.58 E-value=2.1e-08 Score=80.16 Aligned_cols=67 Identities=22% Similarity=0.153 Sum_probs=58.3
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCe-EEEecCCCCCCCCCCCceEEEEec-CHHHHHHHHHHHHHHhhh
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGAS-VRVLSADEAPFYVTEDERIVEMQG-EAAKVLKALEAVVGHLRK 243 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~-I~i~~~~~~p~~~~~~er~v~I~G-~~~~V~~A~~~I~~~l~~ 243 (466)
..+...|.||.+.+|.|||++|.+|++|+++||++ |.+. .++..|+|.| +.+++.+|+.+|..+-+.
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~----------eddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD----------EDTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE----------TTTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE----------cCCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 56888999999999999999999999999999998 9995 1247899999 899999999999654433
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.37 E-value=9e-07 Score=75.94 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=61.9
Q ss_pred cceEEEEEeccC------cceeeecCCchhHHHHHHHhCCeEEEecCCCCC-----------CCCCCCceEEEEec-CHH
Q 012307 167 AFCSVRLLVPST------QAINLIGKQGSLIKSIQENSGASVRVLSADEAP-----------FYVTEDERIVEMQG-EAA 228 (466)
Q Consensus 167 ~~~~~~llVP~~------~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p-----------~~~~~~er~v~I~G-~~~ 228 (466)
...+.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+.... .....++-.|.|.+ ..+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457889999988 889999999999999999999999997532211 00123356788888 688
Q ss_pred HHHHHHHHHHHHhhhc
Q 012307 229 KVLKALEAVVGHLRKF 244 (466)
Q Consensus 229 ~V~~A~~~I~~~l~~~ 244 (466)
.+.+|+++|..+|.+.
T Consensus 85 ~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998764
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=1.1e-06 Score=73.97 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=58.9
Q ss_pred cceEEEEEeccC-------cceeeecCCchhHHHHHHHhCCeEEEecCCCC---C--CCCCCCceEEEEec-CHHHHHHH
Q 012307 167 AFCSVRLLVPST-------QAINLIGKQGSLIKSIQENSGASVRVLSADEA---P--FYVTEDERIVEMQG-EAAKVLKA 233 (466)
Q Consensus 167 ~~~~~~llVP~~-------~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~---p--~~~~~~er~v~I~G-~~~~V~~A 233 (466)
...+.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+... + .....++-.|.|.+ +.+++.+|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 457788888865 67999999999999999999999999743211 0 00012344566765 69999999
Q ss_pred HHHHHHHhhhc
Q 012307 234 LEAVVGHLRKF 244 (466)
Q Consensus 234 ~~~I~~~l~~~ 244 (466)
+.+|.++|.+.
T Consensus 90 ~~~Ie~Ll~~v 100 (119)
T 2yqr_A 90 KKLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhch
Confidence 99999998864
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.28 E-value=9e-07 Score=76.44 Aligned_cols=72 Identities=15% Similarity=0.354 Sum_probs=55.9
Q ss_pred eEEEEEeccC------cccceeccccchHHHHHhHhCCeEEEecCCC------------------CCCceEEEEEcC-H-
Q 012307 343 ITQTMQIPIS------YAEDIIGVGGTSIENIRRTSGAIITVQESRG------------------LPDEITVEIKGT-S- 396 (466)
Q Consensus 343 ~t~~i~IP~~------~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~------------------~~~er~V~I~Gt-~- 396 (466)
++.+|.||.+ ++|.|||.+|.++|+|+++|||+|.|..... ..++-.|.|++. +
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 4567788854 5999999999999999999999999975210 112348889984 3
Q ss_pred ----HHHHHHHHHHHHHHhcCc
Q 012307 397 ----SQVQLAQQLIQEYMNNHK 414 (466)
Q Consensus 397 ----~~V~~A~~lI~~~i~~~~ 414 (466)
..++.|+.+|+.+|....
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~ 103 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAA 103 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCS
T ss_pred hhHHHHHHHHHHHHHHHCCCCC
Confidence 279999999999997543
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.05 E-value=2.6e-06 Score=73.56 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=35.5
Q ss_pred eEEEEEecccc------cceeeecCChhHHHHHHHhCceEEEeCC
Q 012307 78 CVFRMIVPVLK------VGSIIGRKGELIKKTCEDTRARIKVLDG 116 (466)
Q Consensus 78 ~~~rllvp~~~------vG~IIGk~G~~Ik~I~~etga~I~v~~~ 116 (466)
+..||.||.+. +|.|||++|.++|+|+++|||+|.|...
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGk 46 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGK 46 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEEST
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecC
Confidence 56789999776 9999999999999999999999999854
No 69
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.00 E-value=1.5e-05 Score=67.45 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=61.3
Q ss_pred EEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCc
Q 012307 345 QTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNHK 414 (466)
Q Consensus 345 ~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~~i~~~~ 414 (466)
..+.|..+.++.|||++|+.|++|+..|.+.|+|+.-. .+++-.|+|-|++..-+.|+.+|+...+-++
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~-s~g~tEVtIfG~~~~Q~rak~MI~sLA~~hr 126 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG-PERRAEIWIFGPPPFRRDVDRMLTDLAHYCR 126 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC-TTSCEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC-CCCcEEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999998653 3578899999999999999999998877553
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.92 E-value=1.1e-05 Score=86.44 Aligned_cols=61 Identities=25% Similarity=0.458 Sum_probs=53.1
Q ss_pred EEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 012307 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGT-SSQVQLAQQLIQEYM 410 (466)
Q Consensus 344 t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt-~~~V~~A~~lI~~~i 410 (466)
...|.||.+++|.|||+||.+||.|+++|||+|.|.+ +-.|.|.|+ .+.+++|+.+|.+++
T Consensus 568 ~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 568 VETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred EEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 5679999999999999999999999999999999963 358999997 578999999997765
No 71
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.61 E-value=3.5e-05 Score=66.87 Aligned_cols=102 Identities=21% Similarity=0.187 Sum_probs=73.4
Q ss_pred eEEEEEecccccceeeecCChhHHHHHHHhCceEEEeCCCCCCCCeEEEecCCCCCCCCCChhHHHHHHHHHHhcCCCCC
Q 012307 78 CVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPEN 157 (466)
Q Consensus 78 ~~~rllvp~~~vG~IIGk~G~~Ik~I~~etga~I~v~~~~~~~~ervv~I~G~~e~~~~v~~A~~ai~~i~~~i~~l~~~ 157 (466)
-.+.++|+...+|..||++|++|+.|+++.|-+|.|-.-. ..+ ...|..++. +.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s-----------~d~---------~~fI~naLs------PA 89 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYS-----------SDL---------ERIVKNLFP------GV 89 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECC-----------SSH---------HHHHHHHST------TS
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcC-----------CCH---------HHHHHHhcC------Cc
Confidence 4678999999999999999999999999999999886441 111 012222111 11
Q ss_pred Ccccc--cCCCcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEe
Q 012307 158 DVDAK--ASGAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVL 205 (466)
Q Consensus 158 ~~~~~--~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~ 205 (466)
..... ...+......+.||..+.+..|||+|.+++-..+-||.+|.|.
T Consensus 90 ~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 90 KIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp CEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred eEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 10000 0002456788999999999999999999999999999888774
No 72
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.50 E-value=0.00021 Score=60.47 Aligned_cols=70 Identities=14% Similarity=0.050 Sum_probs=61.0
Q ss_pred eEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhhc
Q 012307 169 CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 169 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 244 (466)
....|.|....++.|+|++|+.|+.|+..|++.|++..-+ .+++--|+|.|++..-.+|+.+|.++..-+
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~------s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG------PERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC------TTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC------CCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 3477899999999999999999999999999999997432 245778999999999999999999887653
No 73
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.46 E-value=6.9e-05 Score=80.31 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=53.9
Q ss_pred cceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecC-HHHHHHHHHHHHHHh
Q 012307 167 AFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGE-AAKVLKALEAVVGHL 241 (466)
Q Consensus 167 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~-~~~V~~A~~~I~~~l 241 (466)
......|.||.+.++.|||++|++||.|+++|||+|.|. ++..|.|.+. .+.+.+|+++|..++
T Consensus 565 ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 565 GPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-----------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 346788999999999999999999999999999999994 1457888885 678999999987654
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.32 E-value=0.00014 Score=78.94 Aligned_cols=65 Identities=23% Similarity=0.481 Sum_probs=11.2
Q ss_pred EEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcCc
Q 012307 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGT-SSQVQLAQQLIQEYMNNHK 414 (466)
Q Consensus 344 t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt-~~~V~~A~~lI~~~i~~~~ 414 (466)
...|.||.++++.|||+||.+||.|.++||++|.|.+ +-.|.|.++ .+.+++|+.+|..++...+
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d------dG~v~I~~~~~~~~~~A~~~i~~i~~~~~ 636 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASDGAKIKAAIDWIKSITDEAE 636 (726)
T ss_dssp -------------------------------------------------CCSCHHHHHHHHHC---------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC------CceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 3568999999999999999999999999999999964 346788775 7789999999999887543
No 75
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.23 E-value=0.00013 Score=63.21 Aligned_cols=38 Identities=32% Similarity=0.477 Sum_probs=35.5
Q ss_pred eEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEec
Q 012307 169 CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLS 206 (466)
Q Consensus 169 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~ 206 (466)
....++|+...+|..||++|++|+.|+++.|-+|.+..
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 57889999999999999999999999999999999874
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.50 E-value=0.0011 Score=72.04 Aligned_cols=66 Identities=21% Similarity=0.362 Sum_probs=12.0
Q ss_pred ceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEec-CHHHHHHHHHHHHHHhhhc
Q 012307 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG-EAAKVLKALEAVVGHLRKF 244 (466)
Q Consensus 168 ~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G-~~~~V~~A~~~I~~~l~~~ 244 (466)
.....+.||.+.++.|||++|.+||+|+++||++|.|. + +..|.|.+ ..+++.+|+.+|..++.+.
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~--d---------dG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN--D---------DGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp CC------------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE--C---------CceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 45677889999999999999999999999999999984 1 34577776 5889999999998877643
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.02 E-value=0.0045 Score=58.30 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=65.5
Q ss_pred cccceeeecCChhHHHH-HHHhCceEEEeCCCCCCCCeEEEecCCCCCCCCCChhHHHHHHHHHHhcCCCCCCcccc-cC
Q 012307 87 LKVGSIIGRKGELIKKT-CEDTRARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAK-AS 164 (466)
Q Consensus 87 ~~vG~IIGk~G~~Ik~I-~~etga~I~v~~~~~~~~ervv~I~G~~e~~~~v~~A~~ai~~i~~~i~~l~~~~~~~~-~~ 164 (466)
+-+|..||++|.+|+.| ++-.|=+|.|-.-. .+. ...|..++. +...... ..
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s-------------~dp-------~~fi~nals------PA~V~~V~i~ 179 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD-------------DDP-------ARFVANALS------PAKVVSVSVI 179 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC-------------SSH-------HHHHHHHTT------TSCCSEEEEE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEec-------------CCH-------HHHHHhccC------CcceEEEEEE
Confidence 35999999999999999 56678888885431 110 122222211 1110000 00
Q ss_pred CCcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCC
Q 012307 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSAD 208 (466)
Q Consensus 165 ~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~ 208 (466)
........+.||..+.+.-|||+|.+++--.+-||.+|.|....
T Consensus 180 ~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 180 DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred cCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 01235788999999999999999999999999999999997543
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.01 E-value=0.0048 Score=61.31 Aligned_cols=96 Identities=18% Similarity=0.277 Sum_probs=67.0
Q ss_pred cccceeeecCChhHHHHHHHh-CceEEEeCCCCCCCCeEEEecCCCCCCCCCChhHHHHHHHHHHhcCCCCCCcccc-cC
Q 012307 87 LKVGSIIGRKGELIKKTCEDT-RARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAK-AS 164 (466)
Q Consensus 87 ~~vG~IIGk~G~~Ik~I~~et-ga~I~v~~~~~~~~ervv~I~G~~e~~~~v~~A~~ai~~i~~~i~~l~~~~~~~~-~~ 164 (466)
+-+|..||++|.+|+.|.++. |=+|.|-.-. .+. ...|..++. +...... ..
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s-------------~dp-------~~fi~nals------PA~V~~V~~~ 302 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD-------------DDP-------ARFVANALS------PAKVVSVSVI 302 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC-------------SSH-------HHHHHHHTT------TSCCSEEEEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcC-------------CCH-------HHHHHHhcC------CcceeEEEEE
Confidence 469999999999999999998 8888885431 110 112222211 1110000 00
Q ss_pred CCcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCC
Q 012307 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSAD 208 (466)
Q Consensus 165 ~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~ 208 (466)
........+.||..+.+..|||+|.+++-..+-||.+|.|....
T Consensus 303 ~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 303 DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 01246789999999999999999999999999999999997543
No 79
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.40 E-value=0.017 Score=54.33 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=35.3
Q ss_pred EEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCC
Q 012307 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESR 382 (466)
Q Consensus 344 t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~ 382 (466)
+..+.||.+..+.-|||+|.||+--.+.||.+|.|....
T Consensus 185 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 185 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 567899999999999999999999999999999996543
No 80
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.74 E-value=0.026 Score=56.05 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=35.0
Q ss_pred EEEEEeccCcccceeccccchHHHHHhHhCCeEEEecC
Q 012307 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQES 381 (466)
Q Consensus 344 t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~ 381 (466)
...+.||.+..+..|||+|.|++-..+.||.+|.|...
T Consensus 308 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 308 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred EEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 56789999999999999999999999999999999654
No 81
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.69 E-value=0.027 Score=55.75 Aligned_cols=95 Identities=21% Similarity=0.272 Sum_probs=65.2
Q ss_pred cccceeeecCChhHHHHHHHh-CceEEEeCCCCCCCCeEEEecCCCCCCCCCChhHHHHHHHHHHhcCCCCCCcccccC-
Q 012307 87 LKVGSIIGRKGELIKKTCEDT-RARIKVLDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKAS- 164 (466)
Q Consensus 87 ~~vG~IIGk~G~~Ik~I~~et-ga~I~v~~~~~~~~ervv~I~G~~e~~~~v~~A~~ai~~i~~~i~~l~~~~~~~~~~- 164 (466)
+-+|..||.+|.+|+.|.++. |=+|.|-.-. .+. ...|..++. +.......-
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s-------------~d~-------~~fi~nal~------Pa~v~~v~~~ 298 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWS-------------DDP-------KQLIANALA------PATVIEVEIL 298 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECC-------------SSH-------HHHHHHHTC------SSCCSEEEEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecC-------------CCH-------HHHHHHhcC------ccEEEEEEEE
Confidence 358999999999999999997 7788775331 110 012222111 100000000
Q ss_pred CCcceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecC
Q 012307 165 GAAFCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSA 207 (466)
Q Consensus 165 ~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~ 207 (466)
........+.||..+.+.-|||+|.+++--.+-||.+|.|.+.
T Consensus 299 d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 299 DKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp ETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred cCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 0134678999999999999999999999999999999999743
No 82
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.07 E-value=0.0091 Score=64.93 Aligned_cols=63 Identities=27% Similarity=0.453 Sum_probs=0.0
Q ss_pred EEEEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhc
Q 012307 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGT-SSQVQLAQQLIQEYMNN 412 (466)
Q Consensus 344 t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt-~~~V~~A~~lI~~~i~~ 412 (466)
...|.||.++++.|||++|.+|+.|.+++|+.|.|.+ +..|.|.+. .+.+++|+.+|..++..
T Consensus 561 ~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 561 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 4568999999999999999999999999999999964 346777765 45778888888777654
No 83
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=92.62 E-value=0.11 Score=51.42 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=34.3
Q ss_pred EEEEEeccCcccceeccccchHHHHHhHhCCeEEEec
Q 012307 344 TQTMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQE 380 (466)
Q Consensus 344 t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~ 380 (466)
+..+.||.+..+.-|||+|.||+--.+.||.+|.|..
T Consensus 304 ~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 304 AARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp EEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 5678999999999999999999999999999999953
No 84
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.49 E-value=0.0071 Score=66.06 Aligned_cols=59 Identities=25% Similarity=0.412 Sum_probs=19.8
Q ss_pred EEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 012307 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGT-SSQVQLAQQLIQEYM 410 (466)
Q Consensus 346 ~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt-~~~V~~A~~lI~~~i 410 (466)
.|.||.+++|.|||++|.+||.|++++|+.|.|.+ +..|.|+.. ....+.|+.+|..+.
T Consensus 601 ~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 601 TVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CC------------------CTTCCCCCSCC--------------CCCBSSHHHHCC---------
T ss_pred EEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999963 357888775 456777877777765
No 85
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.11 E-value=0.041 Score=59.86 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=0.0
Q ss_pred ceEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEec-CHHHHHHHHHHHHHHhh
Q 012307 168 FCSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG-EAAKVLKALEAVVGHLR 242 (466)
Q Consensus 168 ~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G-~~~~V~~A~~~I~~~l~ 242 (466)
.....+.||.+.++.+||++|.+|+.|.+++|+.|.+.. +..|.|.+ ..+.+.+|.++|..++.
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-----------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-----------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 455678899999999999999999999999999998841 34566655 45677778777766543
No 86
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=88.76 E-value=0.024 Score=61.96 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=20.6
Q ss_pred eEEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEec-CHHHHHHHHHHHHHHh
Q 012307 169 CSVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG-EAAKVLKALEAVVGHL 241 (466)
Q Consensus 169 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G-~~~~V~~A~~~I~~~l 241 (466)
....|.||.+..+.+||++|.+||.|++++|+.|.|.. +..|.|.. ......+|+.+|..+.
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-----------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-----------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 34567799999999999999999999999999998841 44566666 4566667766665543
No 87
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=75.87 E-value=1 Score=35.65 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=24.1
Q ss_pred EEEEEecccccceeeecCChhHHHHHHH
Q 012307 79 VFRMIVPVLKVGSIIGRKGELIKKTCED 106 (466)
Q Consensus 79 ~~rllvp~~~vG~IIGk~G~~Ik~I~~e 106 (466)
.+++.|....-|.|||++|..|++|+++
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4677888889999999999999988765
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=73.83 E-value=1.5 Score=38.08 Aligned_cols=29 Identities=21% Similarity=0.091 Sum_probs=24.3
Q ss_pred EEEEEecccccceeeecCChhHHHHHHHh
Q 012307 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDT 107 (466)
Q Consensus 79 ~~rllvp~~~vG~IIGk~G~~Ik~I~~et 107 (466)
++.+-+..+..|.||||.|.+++.||--+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 45566778899999999999999998554
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=58.71 E-value=3.3 Score=32.58 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=22.0
Q ss_pred EEEEeccCcccceeccccchHHHHHhH
Q 012307 345 QTMQIPISYAEDIIGVGGTSIENIRRT 371 (466)
Q Consensus 345 ~~i~IP~~~~G~IIGkgG~~Ik~Ir~~ 371 (466)
.++.|-...-|.|||++|..|++|+..
T Consensus 37 i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 37 TEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp EEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 456777778899999999999987653
No 90
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=48.25 E-value=7.6 Score=33.49 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=24.2
Q ss_pred EEEEEeccCcccceeccccchHHHHHhHh
Q 012307 344 TQTMQIPISYAEDIIGVGGTSIENIRRTS 372 (466)
Q Consensus 344 t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~S 372 (466)
+..+.|-.+-.|.+|||.|.+++.|+-.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 45677778889999999999999887655
No 91
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=45.93 E-value=6.6 Score=36.41 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=24.4
Q ss_pred EEEEEecccccceeeecCChhHHHHHHHh
Q 012307 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDT 107 (466)
Q Consensus 79 ~~rllvp~~~vG~IIGk~G~~Ik~I~~et 107 (466)
.+++.|....-|.|||++|..|++|+++-
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 36777888899999999999999887653
No 92
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.66 E-value=6.8 Score=35.66 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=22.9
Q ss_pred EEEEecccccceeeecCChhHHHHHHH
Q 012307 80 FRMIVPVLKVGSIIGRKGELIKKTCED 106 (466)
Q Consensus 80 ~rllvp~~~vG~IIGk~G~~Ik~I~~e 106 (466)
+++.|....-|.|||++|..|++|+++
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 567778888999999999999998754
No 93
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=45.09 E-value=8.5 Score=35.80 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.6
Q ss_pred EEEEEecccccceeeecCChhHHHHHHH
Q 012307 79 VFRMIVPVLKVGSIIGRKGELIKKTCED 106 (466)
Q Consensus 79 ~~rllvp~~~vG~IIGk~G~~Ik~I~~e 106 (466)
.+++.|....-|.|||++|..|++|+++
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 5677888899999999999999998875
No 94
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=42.08 E-value=6.9 Score=36.06 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=25.0
Q ss_pred EEEEEecccccceeeecCChhHHHHHHHh
Q 012307 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDT 107 (466)
Q Consensus 79 ~~rllvp~~~vG~IIGk~G~~Ik~I~~et 107 (466)
.+++.|....-|.|||++|..|++|+++-
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 56788888999999999999999987654
No 95
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=41.15 E-value=41 Score=30.78 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=44.8
Q ss_pred EEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHH
Q 012307 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQE 408 (466)
Q Consensus 346 ~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~Gt~~~V~~A~~lI~~ 408 (466)
-+.++..++.+++|+++..++.|.+.+++.|-|-. + -.|=|+++......+...|+.
T Consensus 139 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----N-G~IWi~~~~~~~~~~~~ai~~ 195 (229)
T 2ba0_A 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----N-GLIWVNGDRRKVSIAEEAIYL 195 (229)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----T-SEEEEESCHHHHHHHHHHHHH
T ss_pred EEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----C-cEEEEeCCchhHHHHHHHHHH
Confidence 35889999999999999999999999999999943 2 256688887766555555543
No 96
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=40.41 E-value=7.7 Score=35.72 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=26.2
Q ss_pred EEEEEecccccceeeecCChhHHHHHHHhCceE
Q 012307 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDTRARI 111 (466)
Q Consensus 79 ~~rllvp~~~vG~IIGk~G~~Ik~I~~etga~I 111 (466)
.+.|.|.....|.||||+|++++.||.-+..-+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 345556677899999999999999998776443
No 97
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=38.96 E-value=6.9 Score=35.53 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=22.4
Q ss_pred EEEEecccccceeeecCChhHHHHHHH
Q 012307 80 FRMIVPVLKVGSIIGRKGELIKKTCED 106 (466)
Q Consensus 80 ~rllvp~~~vG~IIGk~G~~Ik~I~~e 106 (466)
+++.|....-|.|||++|+.|++|+++
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456677788899999999999988754
No 98
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=37.53 E-value=7.9 Score=36.03 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=25.0
Q ss_pred EEEEEecccccceeeecCChhHHHHHHHh
Q 012307 79 VFRMIVPVLKVGSIIGRKGELIKKTCEDT 107 (466)
Q Consensus 79 ~~rllvp~~~vG~IIGk~G~~Ik~I~~et 107 (466)
.+++.|....-|.|||++|..|++|+++-
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 56778888899999999999999988763
No 99
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=36.05 E-value=8 Score=35.76 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=22.5
Q ss_pred EEEEecccccceeeecCChhHHHHHHH
Q 012307 80 FRMIVPVLKVGSIIGRKGELIKKTCED 106 (466)
Q Consensus 80 ~rllvp~~~vG~IIGk~G~~Ik~I~~e 106 (466)
+++.|....-|.|||++|..|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 566677788899999999999988754
No 100
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=34.14 E-value=12 Score=34.73 Aligned_cols=27 Identities=41% Similarity=0.557 Sum_probs=22.4
Q ss_pred EEEEecccccceeeecCChhHHHHHHH
Q 012307 80 FRMIVPVLKVGSIIGRKGELIKKTCED 106 (466)
Q Consensus 80 ~rllvp~~~vG~IIGk~G~~Ik~I~~e 106 (466)
+++.|....-|.|||++|..|++|+++
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 456667788899999999999998865
No 101
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=32.74 E-value=60 Score=29.66 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=41.9
Q ss_pred EEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHH
Q 012307 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVV 238 (466)
Q Consensus 171 ~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~ 238 (466)
.-+.++...+.+++|+++..++.|.+.+++.|.+- .+-+ |=|.+.......+...|.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG----------~NG~-IWi~~~~~~~~~~~~ai~ 194 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG----------QNGL-IWVNGDRRKVSIAEEAIY 194 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC----------TTSE-EEEESCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE----------CCcE-EEEeCCchhHHHHHHHHH
Confidence 34567788888999999999999999999999883 3344 448887765554444443
No 102
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=32.36 E-value=11 Score=36.06 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=26.5
Q ss_pred eEEEEEeccc-ccceeeecCChhHHHHHH--------HhCceEEE
Q 012307 78 CVFRMIVPVL-KVGSIIGRKGELIKKTCE--------DTRARIKV 113 (466)
Q Consensus 78 ~~~rllvp~~-~vG~IIGk~G~~Ik~I~~--------etga~I~v 113 (466)
+.-.++|..+ +.+.||||+|+.||+|.. -.+++|.+
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4555666654 688999999999998754 46676666
No 103
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=31.66 E-value=11 Score=34.50 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=22.8
Q ss_pred EEEEecccccceeeecCChhHHHHHHHh
Q 012307 80 FRMIVPVLKVGSIIGRKGELIKKTCEDT 107 (466)
Q Consensus 80 ~rllvp~~~vG~IIGk~G~~Ik~I~~et 107 (466)
+++.|....-|.|||++|..|++|+++-
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 4566677788999999999999988654
No 104
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=29.16 E-value=1.1e+02 Score=27.93 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=45.0
Q ss_pred EEEeccCcccceeccccchHHHHHhHhCCeEEEecCCCCCCceEEEEEc-CHHHHHHHHHHHHHH
Q 012307 346 TMQIPISYAEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKG-TSSQVQLAQQLIQEY 409 (466)
Q Consensus 346 ~i~IP~~~~G~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~V~I~G-t~~~V~~A~~lI~~~ 409 (466)
-+.++..++.+++|+++..+..|.+.+++.|-+-. +..|-|.+ +++.+..+...|+.+
T Consensus 151 vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~------NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 151 IVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR------NGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET------TTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC------CCEEEEecCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999989999999954 23567875 555666666666444
No 105
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=29.13 E-value=20 Score=33.20 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=22.0
Q ss_pred EEEEeccCcccceeccccchHHHHHhH
Q 012307 345 QTMQIPISYAEDIIGVGGTSIENIRRT 371 (466)
Q Consensus 345 ~~i~IP~~~~G~IIGkgG~~Ik~Ir~~ 371 (466)
.++.|-...-|.|||++|..|++|+..
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 456677788899999999999987654
No 106
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=29.10 E-value=30 Score=30.44 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=30.6
Q ss_pred cceEEEEEeccCcccceeccccchHHHH-HhHh--------CC---eEEEec
Q 012307 341 TQITQTMQIPISYAEDIIGVGGTSIENI-RRTS--------GA---IITVQE 380 (466)
Q Consensus 341 ~~~t~~i~IP~~~~G~IIGkgG~~Ik~I-r~~S--------GA---~I~I~~ 380 (466)
.++...|.||.++.|.+|| .+|++| ++++ |+ .+.|.+
T Consensus 5 ~~l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~ 53 (187)
T 1go3_E 5 LEIADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKD 53 (187)
T ss_dssp EEEEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEE
T ss_pred EEEEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEee
Confidence 3567889999999999999 589996 9989 98 566654
No 107
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=28.90 E-value=22 Score=33.84 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=27.6
Q ss_pred ceEEEEEeccCc-ccceeccccchHHHHH--------hHhCCeEEE
Q 012307 342 QITQTMQIPISY-AEDIIGVGGTSIENIR--------RTSGAIITV 378 (466)
Q Consensus 342 ~~t~~i~IP~~~-~G~IIGkgG~~Ik~Ir--------~~SGA~I~I 378 (466)
.+...+.|..+- .+-||||+|+.||+|. +..|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 456677777664 5889999999999664 456777666
No 108
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.58 E-value=22 Score=32.22 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=24.9
Q ss_pred EEEeccCcccceeccccchHHHHHh----HhC---CeEEEe
Q 012307 346 TMQIPISYAEDIIGVGGTSIENIRR----TSG---AIITVQ 379 (466)
Q Consensus 346 ~i~IP~~~~G~IIGkgG~~Ik~Ir~----~SG---A~I~I~ 379 (466)
++.|-...-|.|||++|..|++|+. .+| .+|.|.
T Consensus 43 ~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~ 83 (210)
T 3j20_C 43 KVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVE 83 (210)
T ss_dssp EEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEE
T ss_pred EEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEE
Confidence 4566667789999999999998754 455 455553
No 109
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=25.44 E-value=24 Score=32.71 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=22.5
Q ss_pred EEEEeccCcccceeccccchHHHHHhH
Q 012307 345 QTMQIPISYAEDIIGVGGTSIENIRRT 371 (466)
Q Consensus 345 ~~i~IP~~~~G~IIGkgG~~Ik~Ir~~ 371 (466)
.++.|-...-|.|||++|..|++|+..
T Consensus 49 i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 49 TEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp EEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEcCCCceEECCCchHHHHHHHH
Confidence 456777788899999999999988764
No 110
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=24.36 E-value=1.1e+02 Score=24.14 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=35.8
Q ss_pred hhHHHHHHHhCCeEEEecCCCCCCCC--CCCceEEEEecCHHHHHHHHHHHHHH
Q 012307 189 SLIKSIQENSGASVRVLSADEAPFYV--TEDERIVEMQGEAAKVLKALEAVVGH 240 (466)
Q Consensus 189 ~~Ik~I~~~sga~I~i~~~~~~p~~~--~~~er~v~I~G~~~~V~~A~~~I~~~ 240 (466)
-.|.+|.+++++.+.|...+ +.... .-..=++.+.|..+++.+|+..+.+.
T Consensus 36 PiIs~l~~~~~v~vnIL~g~-I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQ-MDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEE-EEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHCCCEEEEEEE-eEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 47899999999999998532 10000 11233678899999999999888653
No 111
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=24.16 E-value=1.4e+02 Score=27.28 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=42.2
Q ss_pred EEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEec-CHHHHHHHHHHHHH
Q 012307 171 VRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQG-EAAKVLKALEAVVG 239 (466)
Q Consensus 171 ~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G-~~~~V~~A~~~I~~ 239 (466)
.-+.++...+.+++|+++..+..|.++++++|.+- .+- .|-|.+ +.+.+..+...|..
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG----------~NG-~IWi~~~~~~~~~~~~~ai~~ 208 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA----------RNG-RIHLECPNEDLEAIAVMAIKI 208 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE----------TTT-EEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe----------CCC-EEEEecCCHHHHHHHHHHHHH
Confidence 44678888999999999999999999999999884 223 455765 55555555555543
No 112
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.09 E-value=21 Score=32.85 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=22.1
Q ss_pred EEEEeccCcccceeccccchHHHHHhH
Q 012307 345 QTMQIPISYAEDIIGVGGTSIENIRRT 371 (466)
Q Consensus 345 ~~i~IP~~~~G~IIGkgG~~Ik~Ir~~ 371 (466)
.++.|-...-|.|||++|..|++|+..
T Consensus 46 i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp ECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 456777788899999999999987653
No 113
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=21.26 E-value=22 Score=32.61 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=40.7
Q ss_pred EEEEEeccCcceeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHhhh
Q 012307 170 SVRLLVPSTQAINLIGKQGSLIKSIQENSGASVRVLSADEAPFYVTEDERIVEMQGEAAKVLKALEAVVGHLRK 243 (466)
Q Consensus 170 ~~~llVP~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 243 (466)
.+.+.+.....|.||||.|.+++.||.-+..-++-... ....-++-|.|-.+.-...+..+...+.+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~-------~~~rv~LDi~~YR~rR~e~L~~lA~~~A~ 159 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSS-------DYIRVKLDTENYRERRKETLETLAKNIAY 159 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCS-------SCCEEEEESTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCC-------CceEEEEecchHHHHHHHHHHHHHHHHHH
Confidence 45666677789999999999999999776643322100 01122345566566555555555544433
No 114
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.45 E-value=22 Score=32.98 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=22.7
Q ss_pred EEEEEeccCcccceeccccchHHHHHhH
Q 012307 344 TQTMQIPISYAEDIIGVGGTSIENIRRT 371 (466)
Q Consensus 344 t~~i~IP~~~~G~IIGkgG~~Ik~Ir~~ 371 (466)
..++.|-...-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 3456677788899999999999998764
No 115
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=20.13 E-value=21 Score=33.99 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=20.8
Q ss_pred cccceeeecCChhHHHHH--------HHhCceEEE
Q 012307 87 LKVGSIIGRKGELIKKTC--------EDTRARIKV 113 (466)
Q Consensus 87 ~~vG~IIGk~G~~Ik~I~--------~etga~I~v 113 (466)
++-+.|||++|+.||+|. +-.+++|.+
T Consensus 240 ~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 240 SQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 456899999999999775 446666665
Done!